BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate
reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
         (954 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254282207|ref|ZP_04957175.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
 gi|219678410|gb|EED34759.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
          Length = 961

 Score = 1027 bits (2654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/956 (58%), Positives = 711/956 (74%), Gaps = 10/956 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++        + P  +         ++VIKRNG V +F+ SK+S AI KAF+AVEG  A
Sbjct: 12  PTRSNPIPTT-SNPGASPLAATAPGQLRVIKRNGTVVAFEDSKVSVAITKAFLAVEGGTA 70

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + +  LTEQ V    +   S   +HIEDIQDQVE +LM++G HKI R+YV+YR
Sbjct: 71  AASSRIHETVAKLTEQVVATFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYR 130

Query: 123 EERSDVRAAQSHSKSD-APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           E R+  RAA++    +    A ++ ++  DG+    + +R+  IV EAC GL DVS   +
Sbjct: 131 EARAQERAAKAALSPESQQAAERINVVQADGSRSPLDIERVRTIVAEACEGLADVSEAAI 190

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           + E  +N+YDG++  ++ TAL+ ++RTLIE+EPNY+   AR LL+ LR E L +     +
Sbjct: 191 IDEALRNLYDGVAAEEVSTALVITARTLIEQEPNYSYAAARLLLDNLRAEGL-SFMGVAE 249

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            AT  +M   YP     +I+ G++  LL   + DFDL  L + L  ERD  F YLGLQ L
Sbjct: 250 LATQQDMTIHYPAALKAFIKRGIELELLAPDLQDFDLEELGSALLPERDLQFSYLGLQTL 309

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H + +R E+PQ FFMRVAMGLA +E  K  RA+EFY LLSSF +M STPTLFN+
Sbjct: 310 YDRYFIHSDNTRFELPQIFFMRVAMGLAAREEAKNARAIEFYRLLSSFDYMSSTPTLFNA 369

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKS
Sbjct: 370 GTLRPQLSSCYLTTVPDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKS 429

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QG++PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 430 QGIVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNT 489

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV  +  WTLFSP++V DLHDLYGK FE  Y+ YE  A  GE+K+ + + 
Sbjct: 490 ANWIPDLFMKRVFDDGDWTLFSPNDVPDLHDLYGKAFEERYQQYEAMAASGELKLHKTLK 549

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A +LWRKML M+FETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCN
Sbjct: 550 AQSLWRKMLGMIFETGHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSADEIAVCN 609

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL  H  N   + DKL STIRTA+R+LDNVIDIN +++ +A++SN  HR IG+G+M
Sbjct: 610 LGSVNLPQHIENGVLNLDKLRSTIRTAIRMLDNVIDINYYSVPQAEQSNFRHRPIGMGVM 669

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ L + Y S +AV  AD+SME IS++AI AS ELA+ERG+YSS++GSLW QG+F
Sbjct: 670 GFQDALYKLDVAYGSDQAVSFADQSMEAISYYAIEASSELAEERGSYSSYEGSLWSQGIF 729

Query: 722 PIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P DS+ LL + R    + +NR   + W  LK +V   GMRNSN MAIAPTATIANI GVS
Sbjct: 730 PHDSLDLLIQHRGEDYIQVNRDQSMDWAPLKAKVAANGMRNSNVMAIAPTATIANITGVS 789

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWD+ M++DLKY+DGS+  I+RIPD
Sbjct: 790 QSIEPTYQNLYVKSNLSGEFTVVNPYLVKDLKARGLWDKVMVNDLKYYDGSVQAIDRIPD 849

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK  +ATAFE++P WL++SASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKT
Sbjct: 850 DLKAKYATAFEVEPRWLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWFNGLKT 909

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           TYYLRS +AT  EKST++   GKLNAV     +++     +P +C+  D +CE CQ
Sbjct: 910 TYYLRSLAATGTEKSTVE--SGKLNAVSSG--SATPQPAPVPQACSLDDPDCEACQ 961


>gi|300022336|ref|YP_003754947.1| ribonucleoside-diphosphate reductase, subunit alpha [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524157|gb|ADJ22626.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 956

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/944 (63%), Positives = 721/944 (76%), Gaps = 6/944 (0%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
             S   P        QVI+RNG VT FD SKIS A+ KAF+AVEG  A+ S RV + +  
Sbjct: 15  SSSTGIPKATVDPVFQVIRRNGSVTPFDASKISVALTKAFLAVEGGRAAASRRVHETVDG 74

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT Q V  L +        HIE+IQDQVE +LM+  HHK+ R YVLYREER   RAA   
Sbjct: 75  LTSQIVVALTRRGVQERTFHIEEIQDQVELALMRGEHHKVARAYVLYREERKRERAA--E 132

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + +  P  P + +   DG+L   ++ RL  ++EE+C+GL DVS++ +LSET +N+YDG++
Sbjct: 133 TAAPIPTMPSISVKSKDGSLAPLDAARLRKLIEESCAGLADVSAEAILSETQRNLYDGIT 192

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +L  A + ++RTLIE EPNY  VTAR L++KLRRE L+ V  +  +A   EM   YPE
Sbjct: 193 RDELADAPVLAARTLIETEPNYTFVTARLLMDKLRREALSFVAGRTDEARQSEMGERYPE 252

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  +I +G+ A LL   +  FDL  L   LK ERD  F+YLGLQ LYDRYFL  +G R 
Sbjct: 253 YFRAFIAKGIVADLLDPELARFDLDRLGGALKPERDGIFQYLGLQTLYDRYFLQTHGIRF 312

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAFFMRVAMGLAL+E ++E +A+EFY+L+S+F FMCSTPTLFN+GT  PQLSSCFLT
Sbjct: 313 ELPQAFFMRVAMGLALREIDREAKAIEFYDLISTFDFMCSTPTLFNAGTPRPQLSSCFLT 372

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPDDL GIF ++++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDT
Sbjct: 373 TVPDDLDGIFKSIKDNALLAKYSGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDT 432

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           A+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKN GDDRRRTHDMNTA+WIPDLFM+RV 
Sbjct: 433 AIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNAGDDRRRTHDMNTAHWIPDLFMQRVA 492

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  WTLFSPDE  DLHDLYG  F   YE YE +A+R E+KV R++ AV LWR+MLTMLF
Sbjct: 493 EDGQWTLFSPDETPDLHDLYGTAFAERYEAYEEKAERMEMKVARRVRAVDLWRRMLTMLF 552

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPWITFKDPCN+RSPQQH G+VHSSNLC EITLN+S++E AVCNLGSINL+AH  N+
Sbjct: 553 ETGHPWITFKDPCNLRSPQQHCGIVHSSNLCAEITLNTSNDEVAVCNLGSINLVAHVTND 612

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D+DKL  T++TA+R+LDNVIDIN +TI +A++SN  HR +G+GLMGFQ AL  L I Y
Sbjct: 613 GVDFDKLERTVKTAMRMLDNVIDINFYTIPEARRSNLRHRPVGMGLMGFQDALQALRINY 672

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EAV  AD SME ISFHAISASV+LA ERG Y SF GSLW QG+ PIDSI LL   R 
Sbjct: 673 GSEEAVAFADTSMEAISFHAISASVDLAAERGRYPSFDGSLWSQGILPIDSIELLKSARG 732

Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            +L ++ +S L WD L+ RV+T GMRNSN MAIAPTATI+NICGV+QSI+P+++NLYVKS
Sbjct: 733 TDLRLDTSSTLDWDGLRDRVRTTGMRNSNTMAIAPTATISNICGVAQSIEPAFRNLYVKS 792

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           NMSGDFTVVN FLV +LK R LWDE MISDLKY DGS+G I+RIP+DLK ++ATAFEID 
Sbjct: 793 NMSGDFTVVNPFLVRDLKARGLWDEVMISDLKYFDGSLGAIDRIPEDLKALYATAFEIDA 852

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+++A+RRQKWIDQ QSLNLY+  P+G+KLD +YR AW  GLKTTYYLRS+SAT VEK
Sbjct: 853 HWLVDAAARRQKWIDQGQSLNLYIAAPNGRKLDALYRLAWERGLKTTYYLRSQSATHVEK 912

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGI---PSSCTSDTECEVCQ 954
           STLKG DGKLNAV  +  +S+  ++      +    D  CE CQ
Sbjct: 913 STLKGTDGKLNAVSSSVHHSAPENIEAMAGKACLIDDPTCEACQ 956


>gi|254239526|ref|ZP_04932848.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
 gi|126192904|gb|EAZ56967.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
          Length = 963

 Score = 1022 bits (2641), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/960 (58%), Positives = 703/960 (73%), Gaps = 17/960 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QASAPQAADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D ++ LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE 
Sbjct: 68  SSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  R     +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAAERKNAGAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L       + AT
Sbjct: 188 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E ++E R +EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARTIEFYNLLSSFDYMSSTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + A  
Sbjct: 487 IPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL+ H  + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PID
Sbjct: 667 DALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPID 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S   L E R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DLK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPV-------TDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           LR+ +ATS EKST+    GKLNAV           P +      +P +C+ D  +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSAGGNDGLQATPAAEPKPAPVPQACSIDNPDCEACQ 963


>gi|75677069|ref|YP_319490.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           winogradskyi Nb-255]
 gi|74421939|gb|ABA06138.1| ribonucleotide reductase large subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 969

 Score = 1021 bits (2640), Expect = 0.0,   Method: Composition-based stats.
 Identities = 605/969 (62%), Positives = 741/969 (76%), Gaps = 15/969 (1%)

Query: 1   MHPSKDVNKGDEDAFPSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           M  + +         PSL  A   P      QVI+RNG V+ FD +KI+ A+ KAF+AVE
Sbjct: 1   MSAATETVPAARIVRPSLSAAATAPSSEPACQVIRRNGSVSPFDSAKIAVALTKAFLAVE 60

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G  A+ S RV DI+  LT+Q V  L + + +    HIEDIQDQVE +LM+S HHK+ R Y
Sbjct: 61  GNSAAASRRVHDIVTGLTDQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAY 120

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
           VLYREER+  RA    SKS    A      L++   DG+LI+ ++ RL  +VEEAC+GL 
Sbjct: 121 VLYREERARERAKAQESKSKKGGAAAAKAALRMKSADGSLIALDTPRLTAVVEEACAGLG 180

Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234
           DVS+  +L+ET++N+YDG+S  +L  A I ++RTL+E +P+YAKV+AR LL+K+RRE L+
Sbjct: 181 DVSASAILTETHRNLYDGISVDELAQAPILAARTLVETDPDYAKVSARLLLDKMRREALS 240

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
            V  + ++AT  EM   Y +YF  Y+  G+   LL   +  FDL  LA  LK ERD  F+
Sbjct: 241 FVAGRLEQATQAEMAERYADYFLSYVRAGIDHELLDPEIGRFDLDRLAAALKPERDLRFD 300

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
           YLGLQ LYDRYFLH+   R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM S
Sbjct: 301 YLGLQTLYDRYFLHVRSVRFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMAS 360

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TPTLFN+GT  PQLSSCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI
Sbjct: 361 TPTLFNAGTLRPQLSSCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHI 420

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            GTNG+SQGV+PFLKVANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRR
Sbjct: 421 KGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRR 480

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           RTHDMNTANW+PDLFM+RV ++  WTLFSPDE  DLHDL GK F   Y  YE +A RGE+
Sbjct: 481 RTHDMNTANWVPDLFMQRVEEDGMWTLFSPDETPDLHDLTGKAFAGRYAYYEEKAARGEL 540

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +V +++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+
Sbjct: 541 RVTKQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSN 600

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E AVCNLGS+NL+ H  + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN  HR
Sbjct: 601 TEVAVCNLGSVNLVNHIKDGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHR 660

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ AL++L +PYAS EAV  ADESME I++HAIS SVELA ERG Y S++GS
Sbjct: 661 PVGLGIMGFQDALNILRLPYASDEAVSFADESMEAIAYHAISGSVELAAERGRYPSYQGS 720

Query: 715 LWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LW +GV P+DS+ L+ E R  E+ ++R+SRL WD L++RV TIGMRNSNCMAIAPTATI+
Sbjct: 721 LWSKGVLPLDSLELVDEARGAEVDIDRSSRLDWDSLRQRVMTIGMRNSNCMAIAPTATIS 780

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NICGVSQSI+P+YQNLYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G 
Sbjct: 781 NICGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGE 840

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+R+PDDLK ++ATAFEID  WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW
Sbjct: 841 IDRVPDDLKALYATAFEIDSAWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAW 900

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSLGIPSSCT 945
             GLKTTYYLRSRSAT VEKSTLKG DGKLNAV  +   +         + S G  S   
Sbjct: 901 KRGLKTTYYLRSRSATHVEKSTLKGTDGKLNAVAASVSVAPLNGHAAVASASEGWKSCRV 960

Query: 946 SDTECEVCQ 954
            D  CE CQ
Sbjct: 961 DDPTCEACQ 969


>gi|254483512|ref|ZP_05096739.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
 gi|214036233|gb|EEB76913.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
          Length = 958

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/953 (58%), Positives = 699/953 (73%), Gaps = 11/953 (1%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
             +  D +  P+           ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+ S
Sbjct: 13  GTSPVDRETAPAAGGIAATAPGQLRVIKRNGTVVPFEESKISVAITKAFLAVEGGTAAAS 72

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            R+ + +  LT+Q      +   S   +HIED+QDQVE SLM++G HKI R+YV+YREE+
Sbjct: 73  SRIHETVAKLTDQVAATFQRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREEQ 132

Query: 126 SDVRAAQSHSKSD-APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           S  RAA++    +    A  + ++  DG+ ++ +  RL  +V EAC  L+DV    +L E
Sbjct: 133 SRKRAAKASLSQETQDAANGINVIQPDGSRVALDLDRLHTVVSEACFELEDVVESAILDE 192

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
             KN+YDG++  +L T+L+ ++RT+IE++PNY+ V AR L + LR E L +       AT
Sbjct: 193 ALKNLYDGVTAEELATSLVITARTMIEQDPNYSYVAARLLCDNLRAEAL-SFLGVATNAT 251

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             +M  LY +    YI  G++  LL  ++  +DL  L   L  ERD  F YLGLQ LYDR
Sbjct: 252 QADMGQLYAKALPAYIARGIELELLSPNLAGYDLQRLGEALLPERDLQFTYLGLQTLYDR 311

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H + +R E+PQ FFMRVAMGLA +E  +  RA+EFY LLSSF +M STPTLFN+GT 
Sbjct: 312 YFIHSDETRFELPQVFFMRVAMGLAAEEANRNDRAIEFYELLSSFDYMSSTPTLFNAGTL 371

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQG+
Sbjct: 372 RPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGI 431

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+DVEEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 432 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDVEEFVELRKNTGDDRRRTHDMNTANW 491

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV     WTLFSP +V DLHDLYG  FE  Y +YE  A  GEIK+F+ + A  
Sbjct: 492 IPDLFMKRVFNGEDWTLFSPSDVPDLHDLYGVAFEQRYAHYEAMAAAGEIKLFKTVKAEN 551

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 552 LWRKMLGMLFETGHPWMTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 611

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL  H   N  + +KL +T+RTAVR+LDNVIDIN +++ +AK SN  HR +GLGLMGFQ
Sbjct: 612 VNLPQHIDENGLNLEKLRNTVRTAVRMLDNVIDINYYSVPQAKNSNLMHRPVGLGLMGFQ 671

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+  H+ Y S +AV  AD SME IS++AI AS ELA ERGAYSS++GSLW QGVFPID
Sbjct: 672 DALYKQHLAYGSEQAVSFADHSMEAISYYAIEASSELAAERGAYSSYEGSLWSQGVFPID 731

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S+  L + R    + +++T  + W  L+ +V+  GMRNSN MAIAPTATIANI GVSQSI
Sbjct: 732 SLQRLIDERGADYIQVDQTESMDWQALRSQVQQNGMRNSNVMAIAPTATIANITGVSQSI 791

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTVVN +LV +LK+R LWD  M++DLKY+DGS+  I+RIP D+K
Sbjct: 792 EPTYQNLYVKSNLSGEFTVVNPYLVRDLKERGLWDGVMVNDLKYYDGSVQAIDRIPADIK 851

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            I++TAFE++P WL+++ASRRQKWIDQAQSLNLY++  +GKKLD  YR AW  GLKTTYY
Sbjct: 852 GIYSTAFEVEPRWLVDAASRRQKWIDQAQSLNLYINNANGKKLDITYRMAWYSGLKTTYY 911

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           LRS +AT  EKST+    G LNAV     N +     +P +C+  D +CE CQ
Sbjct: 912 LRSLAATGTEKSTID--TGTLNAVS----NEAAGPAPVPQACSLDDPDCEACQ 958


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040179|gb|ACT56975.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 1018 bits (2631), Expect = 0.0,   Method: Composition-based stats.
 Identities = 954/954 (100%), Positives = 954/954 (100%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK
Sbjct: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
           GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL
Sbjct: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI
Sbjct: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP
Sbjct: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI
Sbjct: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN
Sbjct: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK
Sbjct: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN
Sbjct: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI
Sbjct: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC
Sbjct: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL
Sbjct: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV
Sbjct: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ
Sbjct: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD
Sbjct: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT
Sbjct: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ
Sbjct: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954


>gi|92119122|ref|YP_578851.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           hamburgensis X14]
 gi|91802016|gb|ABE64391.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
          Length = 966

 Score = 1017 bits (2630), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/967 (60%), Positives = 739/967 (76%), Gaps = 14/967 (1%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M  + +  + +  + P+ A   P      QVI+RNG V+ FD SKI+ A+ KAF+AVEG 
Sbjct: 1   MSLATEAARAERPSLPAAAA-MPSSEPAYQVIRRNGSVSPFDSSKIAVALTKAFLAVEGN 59

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A+ S RV DI+  LT+Q V  L + + +    HIEDIQDQ E +LM+S HHK+ R YVL
Sbjct: 60  SAAASRRVHDIVTELTDQIVASLTRRSDAGRTFHIEDIQDQAELALMRSAHHKVARAYVL 119

Query: 121 YREERSDVRAAQSHSKSDAPIA----PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV 176
           YREER+  RA    S +    A    P L++   DG++   +++RL  +VEEAC+GL+ V
Sbjct: 120 YREERARERAKAQESNAKKSNAAAATPALRMKSVDGSMAPLDTRRLAAVVEEACAGLEGV 179

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
           S++ +L+ET++N+YDG+S  +L  A I ++RTL+E +P+YAK +AR LL+KLRRE L+ +
Sbjct: 180 SAEAILTETHRNLYDGISADELALAPILAARTLVETDPDYAKASARLLLDKLRREALSLI 239

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
             +P++AT  EM   Y EYF  Y++ G++  LL   +  FDL  LA  LK ERD  F+YL
Sbjct: 240 AGRPEQATQAEMTGRYAEYFLGYVQTGIENELLDPEIGRFDLDRLAAALKPERDLQFDYL 299

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G Q LYDRYFLH+ G+R E+PQAFFMRVA GLAL+E ++E +A+ FYNLLSSF FM STP
Sbjct: 300 GFQTLYDRYFLHVRGTRFELPQAFFMRVACGLALREIDREDKAIAFYNLLSSFDFMASTP 359

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFN+GT+  QLSSCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI G
Sbjct: 360 TLFNAGTQRAQLSSCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKG 419

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKVANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRT
Sbjct: 420 TNGESQGVVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 479

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANW+PDLFM+RV ++  WTLFSP+E  DLHDL GK F   Y +YE +A RGE++V
Sbjct: 480 HDMNTANWVPDLFMQRVEEDGVWTLFSPNETPDLHDLTGKAFAERYAHYEGKAARGEMRV 539

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E
Sbjct: 540 TKQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTE 599

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            AVCNLGS+NL+ H  + + D+  LA T++TA+R+LDNV+++N +TI +A+ SN  HR +
Sbjct: 600 VAVCNLGSVNLVNHLHDGKLDHAHLARTVKTAMRMLDNVLNVNFYTIPEARTSNLRHRPV 659

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLGLMGFQ AL++L +PYA  EAV  ADESME IS+ AIS SV+LA ERG Y S++GSLW
Sbjct: 660 GLGLMGFQDALNILRLPYACDEAVSFADESMEAISYWAISGSVDLAAERGRYPSYQGSLW 719

Query: 717 DQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            +G+ P+DS+ L+ E R   + ++R+SRL W+ L++RV T+GMRNSNCMAIAPTATI+NI
Sbjct: 720 SKGILPLDSLALVDEARGAPIDLDRSSRLDWEALRQRVMTVGMRNSNCMAIAPTATISNI 779

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           CGVSQSI+P+YQNLYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DG +  I+
Sbjct: 780 CGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGGLSRID 839

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           R+PDDLK ++ATAFEID  WLI++A+RRQKWIDQAQSLNLY+ +PSGKKLD +YR AW  
Sbjct: 840 RVPDDLKALYATAFEIDSAWLIDAAARRQKWIDQAQSLNLYIADPSGKKLDALYRHAWKR 899

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSLGIPSSCTSD 947
           GLKTTYYLRSRSAT VEKSTLK  DGKLNAV  +   +           S G  +    D
Sbjct: 900 GLKTTYYLRSRSATHVEKSTLKVTDGKLNAVSASVSTAPLNGHAASVAESDGWKACRIDD 959

Query: 948 TECEVCQ 954
             CE CQ
Sbjct: 960 PTCEACQ 966


>gi|85714831|ref|ZP_01045817.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
 gi|85698317|gb|EAQ36188.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
          Length = 956

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/951 (62%), Positives = 732/951 (76%), Gaps = 13/951 (1%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S A   P      QVI+RNG V+ FD +KI+ A+ KAF+AVEG  A+ S RV DI+  LT
Sbjct: 6   SAAAAMPPSEPAYQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVAELT 65

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA----Q 132
            Q V  L + + +    HIEDIQDQVE +LM+S HHK+ R YVLYREER+  RA     +
Sbjct: 66  GQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKSQESK 125

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +   +       L++   DG+LI+ ++KRL  +V EAC+GL DVS+  +L+ET++N+YDG
Sbjct: 126 AKKGNTTAAKTVLRMKSADGSLIALDTKRLATVVVEACAGLGDVSASAILAETHRNLYDG 185

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +L  A I ++RTL+E +P+YAK +AR LL+KLRRE L+ V  + ++AT  EM   Y
Sbjct: 186 ISVDELALAPILAARTLVETDPDYAKASARLLLDKLRREALSFVSGRSEQATQAEMAERY 245

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +YF  Y+  G+   LL   +  FDL  LA  LK ERD  F+YLGLQ LYDRYFLH+ G 
Sbjct: 246 ADYFRAYVRTGIDNELLDLEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHVRGV 305

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT  PQLSSCF
Sbjct: 306 RFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLSSCF 365

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAN
Sbjct: 366 LTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVAN 425

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+R
Sbjct: 426 DTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMRR 485

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  WTLFSPDE  DLHDL GK F   Y  YE +A RGE++V +++ AV LWR+MLTM
Sbjct: 486 VEEDGMWTLFSPDETPDLHDLTGKAFTERYACYEEKAARGELRVTKQVRAVDLWRRMLTM 545

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL++H  
Sbjct: 546 LFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVSHIK 605

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++L +
Sbjct: 606 DGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGVMGFQDALNILRL 665

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS  AV  ADESME I+++AIS SVELA ERG Y S++GSLW +G+ P+DS+ L+ E 
Sbjct: 666 PYASNGAVSFADESMEAIAYYAISGSVELAAERGRYPSYQGSLWSKGILPLDSLTLVDEA 725

Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++R+SRL WD L++ V TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQNLYV
Sbjct: 726 RGAAVDIDRSSRLDWDSLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYV 785

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEI
Sbjct: 786 KSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATAFEI 845

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW  GLKTTYYLRSRSAT V
Sbjct: 846 DSSWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSATHV 905

Query: 912 EKSTLKGVDGKLNAVPV--------TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           EKSTLKG DGKLNAV              +++ S G  S    D  CE CQ
Sbjct: 906 EKSTLKGTDGKLNAVAASVSAAPLNGHATAASASEGWKSCRIEDPTCEACQ 956


>gi|325272775|ref|ZP_08139119.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
 gi|324102082|gb|EGB99584.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
          Length = 959

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/956 (58%), Positives = 705/956 (73%), Gaps = 13/956 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QAKVPQAADSQQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +++S +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAKERATRANSDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +    + AT
Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+E+GV+  LL  ++  +DL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYVEKGVEFELLDPALKGYDLERLGKAIDHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHINDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+D
Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLD 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L E R    + +N    L W  +++RVK  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIEARGQKYIDVNLEESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV       P  +     +P +C   + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|313497536|gb|ADR58902.1| NrdA [Pseudomonas putida BIRD-1]
          Length = 959

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/956 (58%), Positives = 707/956 (73%), Gaps = 13/956 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+ P LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QAQVPQAADSNPDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ + A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHIVDGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D
Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L E R    + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV       P  +     +P +C   + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|167035229|ref|YP_001670460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida GB-1]
 gi|166861717|gb|ABZ00125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida GB-1]
          Length = 959

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/956 (57%), Positives = 704/956 (73%), Gaps = 13/956 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QAKVPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HI Y S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D
Sbjct: 667 DALYLQHIAYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIEARGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV       P  +     +P +C   + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|148546453|ref|YP_001266555.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida F1]
 gi|148510511|gb|ABQ77371.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida F1]
          Length = 959

 Score = 1012 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/956 (58%), Positives = 706/956 (73%), Gaps = 13/956 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QAQVPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D
Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L E R    + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV       P  +     +P +C   + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|15596353|ref|NP_249847.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAO1]
 gi|107100606|ref|ZP_01364524.1| hypothetical protein PaerPA_01001631 [Pseudomonas aeruginosa PACS2]
 gi|116049088|ref|YP_792110.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892880|ref|YP_002441749.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa LESB58]
 gi|254234290|ref|ZP_04927613.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|296390474|ref|ZP_06879949.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAb1]
 gi|313106127|ref|ZP_07792382.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
 gi|9947078|gb|AAG04545.1|AE004545_8 NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa PAO1]
 gi|115584309|gb|ABJ10324.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166221|gb|EAZ51732.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|218773108|emb|CAW28920.1| NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa LESB58]
 gi|310878884|gb|EFQ37478.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
          Length = 963

 Score = 1012 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/960 (58%), Positives = 704/960 (73%), Gaps = 17/960 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QASAPQAADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D ++ LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE 
Sbjct: 68  SSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  R     +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAAERKNAGAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L       + AT
Sbjct: 188 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + A  
Sbjct: 487 IPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL+ H  + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PID
Sbjct: 667 DALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPID 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S   L E R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DLK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------SSTHSLGIPSSCTSD-TECEVCQ 954
           LR+ +ATS EKST+    GKLNAV     +       +      +P +C+ D  +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963


>gi|104780528|ref|YP_607026.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           entomophila L48]
 gi|95109515|emb|CAK14216.1| ribonucleoside diphosphate reductase, alpha subunit [Pseudomonas
           entomophila L48]
          Length = 958

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/948 (58%), Positives = 705/948 (74%), Gaps = 13/948 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           ++   L    P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ S R+ D +
Sbjct: 18  ESNQDLTATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 74

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++R+  RA +
Sbjct: 75  ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 134

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +++ +     P ++I + DG+L   +  RL  I+ EAC GL +V  +++  ET KN+YDG
Sbjct: 135 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGELIQRETLKNLYDG 194

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      ATHHEM  LY
Sbjct: 195 VALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSATHHEMADLY 253

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +    Y+E+GV+  LL  ++  +DL  +   + +ERD  F YLGLQ LYDRYF+H +G 
Sbjct: 254 AKALPAYVEKGVEFELLDPALKGYDLERMGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 313

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT  PQLSSC+
Sbjct: 314 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 373

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 374 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 433

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 434 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 493

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  LWRKML+M
Sbjct: 494 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 553

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL  H  
Sbjct: 554 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 613

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ AL+L HI
Sbjct: 614 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 673

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS  +L E 
Sbjct: 674 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 733

Query: 733 RD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R    + ++ T  L W  +++RVK  G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY
Sbjct: 734 RGQKYIDVDLTESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 792

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK ++ATAFE
Sbjct: 793 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 852

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 853 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 912

Query: 911 VEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954
            EKST+    GKLNAV       P  +     +P +C   + +CE CQ
Sbjct: 913 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 958


>gi|254516738|ref|ZP_05128797.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
           proteobacterium NOR5-3]
 gi|219675161|gb|EED31528.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma
           proteobacterium NOR5-3]
          Length = 967

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 562/957 (58%), Positives = 707/957 (73%), Gaps = 13/957 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           + + +V  G   +   ++   P +   ++VIKRNG V  F+ SKIS AI KAF+AVEG  
Sbjct: 20  NTAANVASGVSASKAEVSATAPGQ---LRVIKRNGTVVPFEASKISVAITKAFLAVEGGT 76

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ + +  LTE       +   S   +HIED+QDQVE SLM++G HKI R+YV+Y
Sbjct: 77  AAASSRIHETVAKLTEMVTATFKRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIY 136

Query: 122 REERSDVRAAQSH-SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           RE+++  RAA+   S      A ++ ++  DG+    + +RL +IV EAC+GL+DVS   
Sbjct: 137 REQQAVKRAARQSLSAETQQAADRINVVQLDGSKAPLDLERLHIIVSEACAGLEDVSESR 196

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L E  +N+YDG+S  +L T+L+ ++RTLIE+EPNY   +AR L + LR E L T     
Sbjct: 197 ILDEALRNLYDGVSMQELSTSLVITARTLIEQEPNYTYASARLLCDNLRTEAL-TFLGVA 255

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           + AT  +M   YP+    YI+ GV+  LL  ++ D+DL  L   +  ERD  F YLGLQ 
Sbjct: 256 ESATQGDMDRYYPQALSAYIKRGVELELLDPTLADYDLEQLGAAILPERDLQFTYLGLQT 315

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H +  RIE+PQ FFMRVAMGLA++E  +E RA+EFY LLSSF +M STPTLFN
Sbjct: 316 LYDRYFIHSDEVRIELPQIFFMRVAMGLAVEEEHREARAIEFYRLLSSFDYMSSTPTLFN 375

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGK
Sbjct: 376 AGTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGK 435

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMN
Sbjct: 436 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMN 495

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV  +  WTLFSP++V DLHDLYGK FE  Y  YE  A  GEIK  + +
Sbjct: 496 TANWIPDLFMKRVFDDGDWTLFSPNDVPDLHDLYGKAFEERYNTYEAMAANGEIKNHKTV 555

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVC
Sbjct: 556 KAQNLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVC 615

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL  H   N  + +KL  T+RTAVR+LDNVIDIN ++++ A+ SN  HR +GLGL
Sbjct: 616 NLGSINLPQHIDENGLNLEKLEQTVRTAVRMLDNVIDINYYSVDTARNSNFRHRPVGLGL 675

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+  HI Y S  AVE AD SME IS++AI AS  LA ERGAYSS++GSLW QG+
Sbjct: 676 MGFQDALYKQHIAYGSDAAVEFADRSMEAISYYAIDASSSLAAERGAYSSYEGSLWSQGI 735

Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDS+  L + R    + ++ T+ L W+ L+  VK  GMRNSN MAIAPTATIANI GV
Sbjct: 736 LPIDSLSKLVDERGSDYIKVDSTTTLDWESLRTSVKARGMRNSNVMAIAPTATIANITGV 795

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTVVN +LVN+LK R LWD  M++DLKY+DGS+ +IERIP
Sbjct: 796 SQSIEPTYQNLYVKSNLSGEFTVVNPYLVNDLKARGLWDSVMVNDLKYYDGSVQSIERIP 855

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I++ AFE++P W++E ASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLK
Sbjct: 856 ADLRAIYSNAFEVEPKWIVECASRRQKWIDQAQSLNLYINNASGKKLDITYRMAWYSGLK 915

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           TTYYLRS +AT  EKST+    G+LNAV  +   +      +P +C+  D +CE CQ
Sbjct: 916 TTYYLRSLAATGTEKSTI--ATGQLNAVSSS---AEPQPAPVPQACSLDDPDCEACQ 967


>gi|26987914|ref|NP_743339.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida KT2440]
 gi|24982623|gb|AAN66803.1|AE016309_5 ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440]
          Length = 959

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/956 (58%), Positives = 706/956 (73%), Gaps = 13/956 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QAQVPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+ +G++  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ + A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHIVDGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D
Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L E R    + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV       P  +     +P +C   + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959


>gi|152988045|ref|YP_001349578.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PA7]
 gi|150963203|gb|ABR85228.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Pseudomonas aeruginosa PA7]
          Length = 963

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/960 (58%), Positives = 704/960 (73%), Gaps = 17/960 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QANAPQAADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D ++ LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE 
Sbjct: 68  SSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  R     +   A   P ++I   DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAAERKNAGATSDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L       + AT
Sbjct: 188 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    YIE+G +  L+   + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP +V DLHDLYGK FE  YE YE  A  G++K+ + + A  
Sbjct: 487 IPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL+ H  + + D  KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  A+  AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PID
Sbjct: 667 DALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPID 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S   L E R    + ++ +  L W  L++RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DLK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------SSTHSLGIPSSCTSD-TECEVCQ 954
           LR+ +ATS EKST+    GKLNAV     +       +      +P +C+ D  +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963


>gi|53804298|ref|YP_114078.1| ribonucleotide-diphosphate reductase subunit alpha [Methylococcus
           capsulatus str. Bath]
 gi|53758059|gb|AAU92350.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylococcus
           capsulatus str. Bath]
          Length = 969

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/968 (58%), Positives = 707/968 (73%), Gaps = 28/968 (2%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P    +       P            V+VI+RNG VT FD +KIS AI KAF+AVEG  A
Sbjct: 14  PLDATSAELRSLSPGE----------VRVIRRNGKVTGFDAAKISVAITKAFLAVEGGNA 63

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + ++ LT+  V  LL+       +HIEDIQDQVE +LM++GH K+ R YVLYR
Sbjct: 64  AASRRIHESVEELTDLVVRALLRRLPGGGTIHIEDIQDQVELALMRAGHQKVARAYVLYR 123

Query: 123 EERSDVRAAQS-HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           EER+ +RA +    K+       +++ ++DGT    ++ RL  +VEEAC GL DV    +
Sbjct: 124 EERARLRAEKQNEGKAQGGAEDVVQVTLEDGTRKPLDTARLRHVVEEACRGLSDVEPAWI 183

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           + ET +N++DG+ E ++   L+ ++RT IE+E NY+ V AR LL+ LRRE L+ +     
Sbjct: 184 IEETRRNLFDGVPEKEVAPTLVMTARTRIEQESNYSYVAARLLLDALRREALSFLGHGAV 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            AT  EM   Y EYF  Y++ GV+  LL   +  FDL  L   LK ERD  F YLGLQ L
Sbjct: 244 SATQDEMSERYGEYFKDYVKRGVELELLSPELARFDLQRLGEALKPERDLQFNYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H    R E+PQAFFMRVAMGLA++E ++E+RA+EFY+LLSSF FM STPTLFN+
Sbjct: 304 YDRYFIHSGDIRFELPQAFFMRVAMGLAIQEVDREERAIEFYDLLSSFDFMSSTPTLFNA 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI GTNGKS
Sbjct: 364 GTLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLFMKRV +   WTLFSP++  DLHDL G+ FE  Y+ YE +ADRGEIK+++++ 
Sbjct: 484 ANWVPDLFMKRVAEEREWTLFSPNDTPDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLP 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AV LWRKML+MLFETGHPW+ FKDPCN+R   QH GVVHSSNLCTEITL+++  E AVCN
Sbjct: 544 AVQLWRKMLSMLFETGHPWLAFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCN 603

Query: 602 LGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+NL AH   +   D +KL  TI T +R+LDNVIDIN +++ +A++SN  HR +GLG+
Sbjct: 604 LGSVNLAAHITPDGALDTEKLQRTIATGMRMLDNVIDINYYSVPQARRSNLRHRPVGLGI 663

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+ L +PYAS EAV  AD SME +S++AI AS +LA ERG YSSF GSLW +G+
Sbjct: 664 MGFQDALYKLRLPYASQEAVAFADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWSRGI 723

Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PIDSI LL E R   L M+R+  L W+ L++RV+T+GMRNSN MAIAPTATI+NICGVS
Sbjct: 724 LPIDSIALLEEGRGGYLQMDRSQTLDWNALRERVRTVGMRNSNTMAIAPTATISNICGVS 783

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNL+VKSN+SG+FTVVN +LV +LK   LWD  MI+DLKY+DGS+  IERIP+
Sbjct: 784 QSIEPTYQNLFVKSNLSGEFTVVNPYLVRDLKTLGLWDAVMINDLKYYDGSVQKIERIPE 843

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
            LK+++ATAFEID  WLIE+ SRRQKW+DQAQSLNLYL EPSGKKLD +Y+ AW+ GLKT
Sbjct: 844 TLKQLYATAFEIDARWLIEAGSRRQKWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKT 903

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------------SSTHSLGIPSSCTS 946
           TYYLRS  AT VEKST    DGKLNAV     +             + T      +    
Sbjct: 904 TYYLRSLGATHVEKST--AFDGKLNAVKTDPIDDAIPGLRPLETVYADTRPAEPKACLID 961

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 962 DPTCEACQ 969


>gi|170720378|ref|YP_001748066.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida W619]
 gi|169758381|gb|ACA71697.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida W619]
          Length = 959

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/956 (58%), Positives = 704/956 (73%), Gaps = 13/956 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           + +     D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QALAPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR++
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++++ +     P ++I + DG+L   +  RL  I+ EAC GL +V   ++  E
Sbjct: 128 RAKERATRANTDAAVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  +      AT
Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    YI +GV+  LL+ ++ DFDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYIAKGVEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IKVF+ I A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+D
Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLD 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L E R    + +N    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPN----SSTHSLGIPSSCTSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV     +    ++  +    +    + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPAQAAGPAPVPKACAIDEPDCEACQ 959


>gi|110635037|ref|YP_675245.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           sp. BNC1]
 gi|110286021|gb|ABG64080.1| ribonucleoside-diphosphate reductase, alpha subunit [Chelativorans
           sp. BNC1]
          Length = 954

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 603/954 (63%), Positives = 736/954 (77%), Gaps = 5/954 (0%)

Query: 4   SKDVNKGDEDAFPSLAYPFP---EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +      +  A   +  P P   E     +VI+RNG VT FDPSKI+ A+ KAF+AVEG 
Sbjct: 3   ATATQLSNGSAAGPVFTPAPVEREAESAYRVIRRNGSVTPFDPSKIAIALTKAFLAVEGS 62

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A+ S RV +++++LTEQ V  L + N++    HIE+IQDQVE +LM+ GHHK+ R YVL
Sbjct: 63  VAAGSRRVHEVVEDLTEQVVGALTRRNEAGRTFHIEEIQDQVELALMRDGHHKVARAYVL 122

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           Y       R   +   ++    P L++M++DG+    +  RL  +VEEAC GL+ VS++ 
Sbjct: 123 Y--REERARERAATKTAENAAQPILQVMLEDGSKTPLDIARLTAVVEEACQGLEAVSAEA 180

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +LSE  +N+YDG++  +L  A I ++RTL+E EPNY++V+AR LL+KLRRE LT V  +P
Sbjct: 181 ILSEAQRNLYDGITLDELSLAPILAARTLVETEPNYSQVSARLLLDKLRREALTFVEGRP 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
            +AT  EM   YP YF  +I  G++A ++   +  FDL  L   LK ERD  F+YLG Q 
Sbjct: 241 TQATQAEMVERYPAYFEGFIAAGIQAEMIDPELGRFDLKRLGAALKPERDLRFQYLGFQT 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH +G R E+PQAFFMRVAMGLAL+E ++E RA+EFY+L+S+F FMCSTPTLFN
Sbjct: 301 LYDRYFLHEDGVRYELPQAFFMRVAMGLALREIDREARAIEFYDLISTFDFMCSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSCFLTTV DDL GIF A+++NA+LAKYSGGLGNDWTPVRGLGA I GTNGK
Sbjct: 361 AGTLRPQLSSCFLTTVSDDLDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGARIKGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQG++PFLKVANDTA+AVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMN
Sbjct: 421 SQGIVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHVDIEEFLDLRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANW+PDLFM+RV  +  WTLFSPDE  DLHDLYG  F+ AYE YE +A RGEI+VFR++
Sbjct: 481 TANWVPDLFMERVEADGEWTLFSPDETPDLHDLYGPAFKAAYEEYEARAARGEIRVFRQV 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            AV LWR+MLTMLFETGHPWITFKDPCN+RSPQ+H GVVHSSNLCTEITLN+S +E AVC
Sbjct: 541 RAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQRHAGVVHSSNLCTEITLNTSKDEVAVC 600

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL AH +    D +KLA T+ TA+R+LDNVIDIN +TI +A++SN  HR +GLGL
Sbjct: 601 NLGSINLAAHVSEKGLDMEKLARTVATAMRMLDNVIDINFYTIPEARRSNLRHRPVGLGL 660

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL  L +PYAS  AVE AD SME I++HAISASVELA+ERGAY+SF+GSLW +GV
Sbjct: 661 MGFQDALQTLRLPYASEGAVEFADRSMEAIAYHAISASVELAKERGAYASFEGSLWSKGV 720

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
            PIDS+  +AE R    M+R + L W+ L+ RV   GMRNSN MAIAPTATI+NICGVSQ
Sbjct: 721 LPIDSLSFVAESRGVDGMDRGTTLDWESLRARVVEHGMRNSNTMAIAPTATISNICGVSQ 780

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNL+VKSNMSGDFTVVN+ LV++LK R LWDE M+SDLKY+DG +G I+R+PDD
Sbjct: 781 SIEPAYQNLFVKSNMSGDFTVVNAALVHDLKARGLWDEVMVSDLKYYDGLLGQIDRVPDD 840

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK ++ATAFEIDP WLIE+ASRRQKWIDQAQSLNLY+  PSGKKLD +YR AW  GLKTT
Sbjct: 841 LKALYATAFEIDPAWLIEAASRRQKWIDQAQSLNLYIANPSGKKLDELYRLAWRKGLKTT 900

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRSRSAT VEKSTLK  DGKLNAV V    ++    G+ +    D +CE CQ
Sbjct: 901 YYLRSRSATHVEKSTLKRADGKLNAVAVMPQPAAFELEGVKACAIDDPDCEACQ 954


>gi|330811234|ref|YP_004355696.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379342|gb|AEA70692.1| Ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 963

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/960 (57%), Positives = 703/960 (73%), Gaps = 17/960 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+ P L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QGTAPLAADSNPDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA +S + +     P ++I   DG+L   +  RL  IV EAC GL++V   ++  E
Sbjct: 128 RAKERATRSPADAPVQAHPSIRIARADGSLAPLDMGRLNTIVTEACEGLEEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L +  +  + AT
Sbjct: 188 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGL-SFLEVAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+ +G++  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMVDLYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IK+F+ + A  
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKD 546

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS
Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           INL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +AK SN  HR +GLG+MGFQ
Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQ 666

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+D
Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLD 726

Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           S  +L   R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQSI
Sbjct: 727 SQQILIAQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +LK
Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
           +++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYY
Sbjct: 846 ELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDP--------NSSTHSLGIPSSCTSDTECEVCQ 954
           LR+ +ATS EKST+    GKLNAV               +  +    +    + +CE CQ
Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963


>gi|209885873|ref|YP_002289729.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874069|gb|ACI93865.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha
           carboxidovorans OM5]
          Length = 969

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 608/953 (63%), Positives = 737/953 (77%), Gaps = 13/953 (1%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
             P    P P +   +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG  A+ S RV +I++
Sbjct: 18  LSPESLAPSP-REPAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEIVE 76

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT++ VT L +        HIED+QDQVE +LM+S HHK+ R YVLYREER+  RAA  
Sbjct: 77  GLTQEVVTNLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAAGK 136

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
            +++     P L++ + +GT    + KRLE+I+ EA  GL  V    VL+E  +N+YDG+
Sbjct: 137 SAEAAVSNEPALQMTLANGTRAPLDIKRLELIIREAGEGLDGVDPAPVLAEARRNLYDGI 196

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S+ +L  A I ++RTL+E EPNYA V+AR LL+KLR EVLT +YK P  A+  +M   Y 
Sbjct: 197 SQDELALAPIMAARTLVEHEPNYAYVSARLLLDKLRSEVLTYLYKTPTSASQADMATRYA 256

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           EYF  Y++ G++A LL   +  FDL  LA+ LK ERD  F++LGLQ LYDRYFLH+ GSR
Sbjct: 257 EYFPVYVKAGIEAELLDPELGRFDLDRLASALKPERDLQFQFLGLQTLYDRYFLHVGGSR 316

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +E+PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQLSSCFL
Sbjct: 317 LELPQAFFMRVAMGLAVREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFL 376

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           TTV DDL GIF A+++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAND
Sbjct: 377 TTVADDLDGIFKAVKDNALLAKYSGGLGNDWTNVRGLGAHIKGTNGESQGVVPFLKVAND 436

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV
Sbjct: 437 TAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRV 496

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  WTLFSPDE  DLHDLYG  F+ AYE YE +A RGEI VF+++ A  LWR+MLTML
Sbjct: 497 EEDGTWTLFSPDETPDLHDLYGPAFKAAYEGYEAKAARGEIHVFKEMRATDLWRRMLTML 556

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           FETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINLL H   
Sbjct: 557 FETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTR 616

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              ++DKL  TI TAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ ALH+  IP
Sbjct: 617 EGLNHDKLKRTIATAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHIQRIP 676

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
             S  AV  ADESME IS+HAISASV+LA ERG Y SF+GSLW QG+ PIDS+ +LA+ R
Sbjct: 677 ITSDAAVAFADESMEIISYHAISASVDLAGERGRYPSFEGSLWSQGMLPIDSVSILAKAR 736

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           +   ++ ++ L W  L++RVKT GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKS
Sbjct: 737 NGAPLDTSATLDWSGLRERVKTDGMRNSNVMAIAPTATISNICGVTQSIEPAYQNLYVKS 796

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           NMSGDFTVVN FLV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++AT FEID 
Sbjct: 797 NMSGDFTVVNEFLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATVFEIDT 856

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WLI++A+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW +GLKTTYYLRSRSAT VEK
Sbjct: 857 SWLIQAAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEK 916

Query: 914 STLKGVDGKLNAVPVTDPNS------------STHSLGIPSSCTSDTECEVCQ 954
           STLKG DGKLNAV  + P++            +    G+ +    + +CE CQ
Sbjct: 917 STLKGTDGKLNAVSASIPSAQQHAPIVVPNDTAPDLTGVKACSIDNPDCEACQ 969


>gi|146308171|ref|YP_001188636.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina ymp]
 gi|145576372|gb|ABP85904.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           mendocina ymp]
          Length = 968

 Score = 1004 bits (2596), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/966 (57%), Positives = 709/966 (73%), Gaps = 24/966 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           + V     D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QAVAPQGADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE 
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +++ R A + S+   P  P ++I   DG+L   +  RL+ I+ EAC GL +V   ++  E
Sbjct: 128 QANKRKASAGSEIAQP-HPSIRITAADGSLQPLDMGRLQTIIREACEGLAEVDGALIERE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E L T     Q AT
Sbjct: 187 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEAL-TFLGITQSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+++GV+  LL   + ++DL  L   L +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMVDLYAKALPAYVDKGVEFELLDPKLKEYDLEKLGKALNHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           YF+H +G R E+PQ FFMRVAMGLA++E   +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 306 YFIHKDGIRFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGT 365

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYSAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTAN
Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTAN 485

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV ++  WTLFSP EV DLHDL GK FE  YE YE   + G+IK+++ I A 
Sbjct: 486 WIPDLFMKRVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL+ H  + + D +KL  T++TAVR+LDNVIDIN +++ +A+ SN  HR +GLGLMGF
Sbjct: 606 SVNLVNHIVDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HI Y S  A+E AD SME IS++AI AS +LA+ERGAYS+F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIAYGSDAAIEFADRSMEAISYYAIQASCDLAEERGAYSTFEGSLWSKGILPL 725

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R    + ++ +  L W  L++RVK  G+RNSN MAIAPTATI+NI GVSQS
Sbjct: 726 DSQQILIEARGQKYIDVDLSESLDWAPLRERVKK-GIRNSNIMAIAPTATISNIIGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DL
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------------SSTHSLGIPSSCTSDT 948
           YLR+ +ATS EKST+    GKLNAV                   +   +    +    + 
Sbjct: 905 YLRALAATSTEKSTIN--TGKLNAVSAGGDEGFSAKAQAPAQQAAPAPAPVPKACAIDEP 962

Query: 949 ECEVCQ 954
           +CE CQ
Sbjct: 963 DCEACQ 968


>gi|77460467|ref|YP_349974.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens Pf0-1]
 gi|77384470|gb|ABA75983.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 964

 Score = 1004 bits (2596), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/961 (57%), Positives = 700/961 (72%), Gaps = 18/961 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QGTLPQAADSNSDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDA 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           RS  RA ++ +++     P ++I   DG+L   +  RL  IV EAC GL +V   ++  E
Sbjct: 128 RSKERATRTTAEAPVQAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLAEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L       + AT
Sbjct: 188 TLKNLYDGVALNDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVAESAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+ +G++  LL+  +  FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPVLASFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGVRFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE      G+IK+F+ I A 
Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKIKLFKTIQAK 546

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 547 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 606

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D  KL  TI  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 607 SINLPNHIVDGKLDTAKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGF 666

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERG+Y +F+GSLW +GV P+
Sbjct: 667 QDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGVLPL 726

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R    + ++ T  L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 727 DSQQILIEARGQKYIDVDLTESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 785

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 786 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQEL 845

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 846 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 905

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDP--------NSSTHSLGIPSSCTSDTECEVC 953
           YLR+ +ATS EKST+    GKLNAV               +  +    +    + +CE C
Sbjct: 906 YLRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEAC 963

Query: 954 Q 954
           Q
Sbjct: 964 Q 964


>gi|119504229|ref|ZP_01626309.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459737|gb|EAW40832.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 964

 Score = 1003 bits (2594), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/955 (59%), Positives = 716/955 (74%), Gaps = 10/955 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +  V      +   L    P +   ++VIKRNG VTSF+ SKIS AI KAF+AVEG  A+
Sbjct: 16  TAPVTGTGNTSSGRLQATAPGQ---LRVIKRNGTVTSFEDSKISVAITKAFLAVEGGTAA 72

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  LTEQ +T   +   S   +HIEDIQDQVE +LM++G HKI R+YV+YRE
Sbjct: 73  ASSRIHETVAKLTEQVITTFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYRE 132

Query: 124 ERSDVRAAQSHSKSD-APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           ER+  RAA++    +    A  + ++M DG+    N +R+  IV EAC+ L DVS   ++
Sbjct: 133 ERARDRAAKAALSPESQAAASGINVVMPDGSREPLNIERVRTIVSEACADLVDVSESAII 192

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+YDG++  ++ T+L+ ++RT+IE++PNY+ V AR LL+ LR E L  +    + 
Sbjct: 193 DEALRNLYDGVTADEVSTSLVITARTMIEQDPNYSYVAARLLLDNLRAESLNYL-GVAKS 251

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  +M  LY E    +I +GV   LL   +++FD+  L   L  ERD  F YLGLQ LY
Sbjct: 252 ATQSDMAQLYSEALSAFIHQGVTLELLSPELLEFDIAALGQALLPERDLQFSYLGLQTLY 311

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYF+H +  RIE+PQ FFMRVAMGL+++E +   RA+EFY LLSSF +M STPTLFNSG
Sbjct: 312 DRYFIHADEVRIELPQVFFMRVAMGLSIREDDPNTRAIEFYQLLSSFDYMSSTPTLFNSG 371

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ
Sbjct: 372 TLRSQLSSCYLTTVPDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQ 431

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 432 GIVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 491

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFMKRV ++  WTLFSP++V DLHDLYG+ FE  Y  YE  A  GEI+V + + A
Sbjct: 492 NWIPDLFMKRVFEDGDWTLFSPNDVPDLHDLYGRAFEDRYAQYEAMAASGEIRVHKTLKA 551

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
            A+WRKML M+FETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNL
Sbjct: 552 QAVWRKMLGMIFETGHPWVTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEIAVCNL 611

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL  H  + + +  KL +T+RTA+R+LDNVIDIN +++ +A++SN  HR IGLG+MG
Sbjct: 612 GSVNLPQHIEDGKLNLKKLRATVRTAIRMLDNVIDINYYSVPQAEQSNMRHRPIGLGIMG 671

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+ + + YAS  AV  AD+SME +S+ AI AS ELA ERGAYSS++GSLW QGVFP
Sbjct: 672 FQDALYKIDVSYASKGAVSFADQSMEAVSYFAIEASSELAAERGAYSSYEGSLWSQGVFP 731

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS+ +L E R    + +NR     W ELK RV   GMRNSNCMAIAPTATIANI GVSQ
Sbjct: 732 LDSLDILVEQRGANYIEVNRDMTFDWPELKGRVAKHGMRNSNCMAIAPTATIANITGVSQ 791

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTVVN +LV +LK RDLWD+ M++DLKY DGS+ +I+RIPDD
Sbjct: 792 SIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARDLWDKVMVNDLKYFDGSVQSIDRIPDD 851

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK  ++TAFEI+P WL++SASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKTT
Sbjct: 852 LKAKYSTAFEIEPRWLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWYSGLKTT 911

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           YYLRS +AT  EKST++   GKLNAV      S+     +P +C+  D +CE CQ
Sbjct: 912 YYLRSLAATGTEKSTVE--SGKLNAVASGAAESTPQPAPVPQACSLDDPDCEACQ 964


>gi|220935778|ref|YP_002514677.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997088|gb|ACL73690.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 971

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 583/956 (60%), Positives = 722/956 (75%), Gaps = 8/956 (0%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           + +V+   +     LA   P +     VI+RNG VT+FD SKI  AI KAF+AVEG  A+
Sbjct: 19  APEVSPESQVTAAELAATAPGQH---HVIRRNGKVTAFDASKIKVAITKAFLAVEGGNAA 75

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            S R+ DI+  L EQ    L +    +   VHIEDIQDQVE +LM+ GHHKI R YVLYR
Sbjct: 76  ASRRIHDIVAELAEQVCENLFRRAGGSAVTVHIEDIQDQVELALMRGGHHKIARAYVLYR 135

Query: 123 EERSDVRAAQSHSKSDAPIAP--KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           E+++  RAA++ ++  A  A    + +   DGT    ++ RL  +VEEAC+GL+ V  ++
Sbjct: 136 EQQAQKRAAEAATRKPARQAEAAVIHVTRPDGTRAPLDTARLVKVVEEACAGLEAVDGQL 195

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L+E  +N++DG++E D+ TAL+ S+R LIEKEPNY++VTAR L++ LRRE L+ +   P
Sbjct: 196 ILNEAQRNLFDGVAEKDVGTALVMSARVLIEKEPNYSQVTARLLMDTLRREALSFIAGLP 255

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           Q AT  EM   YPEYF  Y++   +  LL   +  +DL  L   LK ERD  F YLGLQ 
Sbjct: 256 QAATQAEMTQRYPEYFKAYVKRAAELELLDSELTRYDLDRLGAALKPERDLQFTYLGLQT 315

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM STPTLFN
Sbjct: 316 LYDRYFIHSGGVRFELPQAFFMRVAMGLAIHEIDREGRAIEFYNLLSSFDFMSSTPTLFN 375

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT  PQLSSC+LTTVPDDL GIFGA+++NA+L+K++GGLGNDWT VRG+GAHI GTNGK
Sbjct: 376 SGTLRPQLSSCYLTTVPDDLDGIFGAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGK 435

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+DVEEF++LRKNTGDDRRRTHDMN
Sbjct: 436 SQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHVDVEEFIELRKNTGDDRRRTHDMN 495

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           +ANWIPDLFMKRV +   WTLFSP+E  DLHDL G+ FE  Y  YE +A RGEIKVF+K+
Sbjct: 496 SANWIPDLFMKRVAEEGEWTLFSPNETPDLHDLVGEAFEQRYAEYEAKAARGEIKVFKKL 555

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            AV LWRKML MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVC
Sbjct: 556 KAVDLWRKMLAMLFETGHPWMTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVC 615

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL AH   N  + +KL  T+ TA+R+LDNVID N +++ +A++SN  HR +GLG+
Sbjct: 616 NLGSVNLAAHVDENGLNLEKLERTVSTAMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGI 675

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+   IPYAS +AVE AD SME +S++AI AS +LA+ERG Y SF GSLW QGV
Sbjct: 676 MGFQDALYQQRIPYASEDAVEFADRSMEAVSYYAIKASTDLAEERGRYQSFDGSLWSQGV 735

Query: 721 FPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            PIDSI LLA+ R   L  + +    WD L+ RVKT+GMRNSN MAIAPTATI+NICGVS
Sbjct: 736 LPIDSIELLAKSRGQYLQQDTSMTFDWDSLRDRVKTVGMRNSNTMAIAPTATISNICGVS 795

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNL+VKSN+SG+FTV+N  LVN+LK R LWDE M++DLKY+DGS+  I+R+P 
Sbjct: 796 QSIEPTYQNLFVKSNLSGEFTVINPNLVNDLKARKLWDEVMVNDLKYYDGSVQPIDRVPA 855

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+++ATAFE+D  WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKT
Sbjct: 856 DLKQLYATAFELDARWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKT 915

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           TYYLRS  AT VEKST+           V   +++  +   P  C+  D ECE CQ
Sbjct: 916 TYYLRSMGATHVEKSTVADASRANKLNAVKGADAAAPATEAPKMCSILDPECEACQ 971


>gi|70731822|ref|YP_261564.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens Pf-5]
 gi|68346121|gb|AAY93727.1| ribonucleoside-diphosphate reductase, alpha chain [Pseudomonas
           fluorescens Pf-5]
          Length = 963

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/961 (57%), Positives = 701/961 (72%), Gaps = 17/961 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S+       D+   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SQANAPQAADSTQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA +S S+      P ++I   DG+    +  RL  IV EAC GL++V   ++  
Sbjct: 127 SRAKERATRSTSEEPVQAHPSIRITRTDGSFAPLDMGRLNTIVSEACEGLEEVDGDLIQR 186

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L    +  + A
Sbjct: 187 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLEVAESA 245

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+ +G++  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 246 THHEMAELYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 305

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 306 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGT 365

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 485

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE   +  +IK+F+ + A 
Sbjct: 486 WIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKTVQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D  KL  T+ TAVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HI Y S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIAYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEARGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDP--------NSSTHSLGIPSSCTSDTECEVC 953
           YLR+ +ATS EKST+    GKLNAV               +  +    +    + +CE C
Sbjct: 905 YLRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEAC 962

Query: 954 Q 954
           Q
Sbjct: 963 Q 963


>gi|192291020|ref|YP_001991625.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris TIE-1]
 gi|192284769|gb|ACF01150.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
          Length = 974

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/958 (61%), Positives = 720/958 (75%), Gaps = 17/958 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
               +            QVI+R+G V+ FD SKI+ A+ KAF+AVEG  A+ S RV D +
Sbjct: 18  PLASADVVAGAAHETSYQVIRRSGEVSPFDASKIAVALTKAFLAVEGSNAAASRRVHDTV 77

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LT+Q V  L +        HIEDIQDQ E +LM+S HHK+ R YV+YREER+  RA +
Sbjct: 78  AELTDQIVANLTRRVGPGRTFHIEDIQDQAELALMRSEHHKVARAYVIYREERTRERA-K 136

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           + +    P+AP L+    DGTL   + +RL  I+ EAC+GL  VS   VL+ET +N+YDG
Sbjct: 137 AAAAQVKPVAPALRTKSADGTLHLIDMQRLAAIIAEACAGLDGVSVDAVLAETQRNLYDG 196

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S+ +L  A I ++R  +E EP+YAKV+AR LL+KLRRE L+ V  +P +AT  +M   Y
Sbjct: 197 ISDDELALAPILAARIFVETEPDYAKVSARLLLDKLRREALSFVEGRPHQATQAQMAERY 256

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            +YF  Y++ G+   L+   +  FD+  LA  +K ERD  F+YLGLQ LYDRYFLH++G+
Sbjct: 257 ADYFSAYVKAGIAHELIDPEIGRFDVSKLAAAIKPERDLQFDYLGLQTLYDRYFLHVHGT 316

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVA G+AL+E ++E +A+EFY+LLSSF FM STPTLFN+GT  PQLSSCF
Sbjct: 317 RFELPQAFFMRVACGIALREVDREAKAIEFYDLLSSFDFMASTPTLFNAGTLRPQLSSCF 376

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQG++PFLKVAN
Sbjct: 377 LTTVPDDLDGIFKSIKDNALLSKYAGGLGNDWTHVRGLGAHIKGTNGESQGIVPFLKVAN 436

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+R
Sbjct: 437 DTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQR 496

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V QN  WTLFSPDE  DLHDL G+ F   Y  YE +A RGE++V ++I AV LWR+MLTM
Sbjct: 497 VEQNGPWTLFSPDETPDLHDLTGRAFAERYAFYEARAARGELRVTKQIRAVDLWRRMLTM 556

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S  E AVCNLGS+NL+ H  
Sbjct: 557 LFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSEREVAVCNLGSVNLVNHVV 616

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D  +L  T+ TA+R+LDNVID+N +TI +A+ SN  HR +GLGLMGFQ AL++L +
Sbjct: 617 DGRLDCARLERTVTTAMRMLDNVIDVNFYTIPEARASNLRHRPVGLGLMGFQDALNILRL 676

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS EAV  ADESME I++ +ISASV+LA ERG Y+S+ GSLW QG+ P+DSI LL E 
Sbjct: 677 PYASDEAVAFADESMEAIAYWSISASVDLAAERGRYASYDGSLWSQGILPLDSIDLLDEA 736

Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++R SRL W+ L+KRV   GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYV
Sbjct: 737 RGAAIEVDRGSRLDWEALRKRVTATGMRNSNVMAIAPTATISNICGVSQSIEPAYQNLYV 796

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEI
Sbjct: 797 KSNMSGDFTVVNTHLVRDLKGRGLWDEVMISDLKYFDGSLGQIDRVPDDLKALYATAFEI 856

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  WLIE+A+RRQKWIDQAQSLNLYL  PSGK LD +YR AW  GLKTTYYLRSRSAT V
Sbjct: 857 DATWLIEAAARRQKWIDQAQSLNLYLANPSGKTLDALYRLAWRRGLKTTYYLRSRSATHV 916

Query: 912 EKSTLKGVDGKLNAVPV--------------TDPNSSTHSLGIPSSC-TSDTECEVCQ 954
           EKSTL+G DGKLNAV                   N    + G   +C   D  CE CQ
Sbjct: 917 EKSTLRGTDGKLNAVSAIILPTASAEPSRSNGAGNGHAATEGWGKACAIDDPGCEACQ 974


>gi|289208616|ref|YP_003460682.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Thioalkalivibrio sp. K90mix]
 gi|288944247|gb|ADC71946.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 964

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/964 (58%), Positives = 716/964 (74%), Gaps = 10/964 (1%)

Query: 1   MHPSKDVNKGDEDAF-PSLAYPFPEKIK----GVQVIKRNGGVTSFDPSKISRAIMKAFM 55
           M+      +  E    P  A P  E +       QVI+RNG VT FD SKI  A+ KAF+
Sbjct: 1   MYSDTQTAEAQEGIQYPPQAEPSAEVLATSPGQHQVIRRNGKVTGFDASKIEVAVTKAFL 60

Query: 56  AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL-IVHIEDIQDQVECSLMQSGHHKI 114
           AVEG  A+ S R+ ++ K +  Q V  L +   +    VHIEDIQDQVE +LM+ GHHK+
Sbjct: 61  AVEGGNAAASRRIHEVSKEVAGQVVDSLFRRAGTQGMTVHIEDIQDQVELALMRGGHHKV 120

Query: 115 TREYVLYREERSDVRAAQ--SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
            R YV+YRE+++  RAA+    S  +   A  L +   DGT    +  RL+ +V EAC G
Sbjct: 121 ARAYVIYREQQAQKRAAEAAEQSPEEQEAAAALNVTRADGTQAPLDEARLQAVVAEACDG 180

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           ++ V  + +L+E  +N++DG++E D+ TAL+ ++R +IEKEPNY++VTAR L++ LRRE 
Sbjct: 181 IEHVDGEKILTEARRNLFDGVAEKDVATALVMAARVMIEKEPNYSEVTARLLMDALRREA 240

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
           L+ V+ +P++AT  ++   Y EYF  YI       L+   +  +DL  L   +K ERD  
Sbjct: 241 LSFVHGRPEEATQAQLAERYAEYFGAYIRRAADLELVDSELTRYDLDKLGAAIKPERDLQ 300

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F YLGLQ LYDRYF+H +G+R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM
Sbjct: 301 FTYLGLQTLYDRYFIHSDGTRFELPQAFFMRVAMGLAINEIDREARAIEFYNLLSSFDFM 360

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            STPTLFNSGT  PQLSSC+LT+VPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GA
Sbjct: 361 SSTPTLFNSGTLRPQLSSCYLTSVPDDLDGIYSAIRDNALLSKFAGGLGNDWTRVRGMGA 420

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           HI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF++LRKNTGDD
Sbjct: 421 HIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFIELRKNTGDD 480

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           RRRTHDMN+ANWIPDLFMKRV ++  WTLFSP+E  DLHDL G +FE  Y  YE +A RG
Sbjct: 481 RRRTHDMNSANWIPDLFMKRVAEDGDWTLFSPNETPDLHDLVGTDFEKRYCEYEEKAARG 540

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E++V + + AV LWRKML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+
Sbjct: 541 ELRVHKTMKAVDLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHTGVVHSSNLCTEITLNT 600

Query: 593 SSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           S +E AVCNLGSINL AH     + D DKL  T+ TA+R+LDNVID N +++ +A++SN 
Sbjct: 601 SDDEIAVCNLGSINLAAHINEAGELDQDKLEQTVNTAMRMLDNVIDYNYYSVPQARRSNL 660

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +GLG+MGFQ AL+ L +PYAS  AVE AD SME +S++AI AS +LA+ERG Y SF
Sbjct: 661 RHRPVGLGIMGFQDALYKLRMPYASEAAVEFADTSMEAVSYYAIKASTDLAEERGRYESF 720

Query: 712 KGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            GSLW QG+ PIDS+  LAE R   L M+ T RL WD+L+KRVK +GMRNSN MAIAPTA
Sbjct: 721 PGSLWSQGILPIDSVEKLAETRGDYLQMDTTQRLEWDKLRKRVKKVGMRNSNTMAIAPTA 780

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK R+LWDE M++DLKY+DGS
Sbjct: 781 TISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVRDLKDRELWDEVMVNDLKYYDGS 840

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           +  ++R+PDDLK ++ATAFE+D  WL+E+ASRRQKWIDQAQSLNLY+ EPSG KLD +Y+
Sbjct: 841 VQPLDRVPDDLKALYATAFELDTRWLVEAASRRQKWIDQAQSLNLYMAEPSGPKLDALYK 900

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW+ GLKTTYYLRS  AT VEKST+           V+    ++      +    D +C
Sbjct: 901 LAWVRGLKTTYYLRSMGATHVEKSTVADSSRANKLNAVSGGQQASEPEAPKACSILDPDC 960

Query: 951 EVCQ 954
           E CQ
Sbjct: 961 EACQ 964


>gi|312962585|ref|ZP_07777075.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
 gi|311283165|gb|EFQ61756.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
          Length = 963

 Score = 1002 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/960 (57%), Positives = 698/960 (72%), Gaps = 17/960 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QGSVPQAADSNMDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA  + +       P ++I + DG+    +  RL  I+ EAC GL++V   ++  E
Sbjct: 128 RAKERAVHAPAAEAVQAHPSIRITLADGSFAPLDLGRLNTIITEACEGLEEVDGDLIQRE 187

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         AT
Sbjct: 188 TLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 246

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    YI +G++  LL+  +  FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 247 HHEMADLYAKALPAYIAKGIEFELLNPVLATFDLEKLGKAINHERDQQFTYLGLQTLYDR 306

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  KE RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 307 YFIHKDGIRFELPQVFFMRVAMGLAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTL 366

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 486

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE  A   G+IK+F+ I A 
Sbjct: 487 IPDLFMKRVFDDGQWTLFSPSEVPDLHDLTGKAFEERYEYYEALAQYPGKIKLFKTIQAK 546

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 547 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 606

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGF
Sbjct: 607 SINLPNHIVNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGF 666

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 667 QDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 726

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 727 DSQQILIEQRGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 785

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 786 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQEL 845

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 846 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 905

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECEVCQ 954
           YLR+ +ATS EKST+    GKLNAV   +    +        +    +    + +CE CQ
Sbjct: 906 YLRALAATSTEKSTIN--TGKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963


>gi|224825452|ref|ZP_03698557.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella
           nitroferrum 2002]
 gi|224602373|gb|EEG08551.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella
           nitroferrum 2002]
          Length = 949

 Score = 1002 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/953 (58%), Positives = 690/953 (72%), Gaps = 17/953 (1%)

Query: 9   KGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           +G   A    A          + I+RNG V  F+P KIS A+ KAF+A+ G   + S  +
Sbjct: 7   EGQTAAELGRAAAPQADFSQYKTIRRNGAVVPFEPVKISIAMTKAFLAIMGHQGATSASI 66

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           +D +  LTE  V+ L++       +HIEDIQDQVE SLM++G H + R YVLYREERS  
Sbjct: 67  RDKVAQLTEMVVSALMRRKPEGGAIHIEDIQDQVELSLMRAGEHDVARAYVLYREERSRE 126

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           RAA+  + +       + ++  +G  +  +  +L   +E AC GL +     +L+ET KN
Sbjct: 127 RAARGEALTQI----TINVVRKNGAKLPLDIAKLRATIESACVGLAETDVDAILTETLKN 182

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+SE ++  + I ++R +IE++P Y  VTAR LL  +R E+L       +  +  EM
Sbjct: 183 IYDGVSEEEVNKSAILAARAMIEQDPAYDYVTARLLLNNIRLEILG------EAVSQEEM 236

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y  YF + I++G+ A LL E + ++DL  L   L   RD  F YLGLQ LYDRYFLH
Sbjct: 237 GECYVSYFPQAIKKGIAAELLDERLGEYDLKKLGAALDASRDLQFGYLGLQTLYDRYFLH 296

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +NG+RIEMPQAF+MRVAMGLAL E E+E RA+EFYN+LSSF FM STPTLFNSGTR  QL
Sbjct: 297 VNGTRIEMPQAFYMRVAMGLALNEVEREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQL 356

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+LTT+ DDL GI+  ++ENA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFL
Sbjct: 357 SSCYLTTIADDLDGIYEGIKENALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFL 416

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDL
Sbjct: 417 KVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDL 476

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV   A WTL SP E  DLHDL G  FE  Y+ YE  A RGEIKV ++I A++LWRK
Sbjct: 477 FMKRVMDGAEWTLLSPSECPDLHDLVGAAFEKRYQEYEAMAARGEIKVSKRIPALSLWRK 536

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           MLTMLFETGHPWITFKDPCNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL 
Sbjct: 537 MLTMLFETGHPWITFKDPCNIRSPQGHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLA 596

Query: 609 AHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            H   +   D  KL  TIR A+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  L
Sbjct: 597 RHMQADGTLDGAKLQRTIRIAMRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCL 656

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           H+  IPYAS EAVE ADESME +++HA  AS ELAQERG Y S+KGSLWD+GV P DSI 
Sbjct: 657 HMKRIPYASQEAVEFADESMELVAYHAYWASSELAQERGRYPSYKGSLWDRGVLPHDSIN 716

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LLA  R   L ++RT RL W++L++R+K  GMRNSNC+AIAPTATIANI GVS SI+P+Y
Sbjct: 717 LLAAERGGYLDVDRTERLDWNKLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTY 776

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNL+VKSN+SG+FTV N  LV +LK+  LWDE M+SDLKY DGS+G I+RIP +LK I+A
Sbjct: 777 QNLFVKSNLSGEFTVTNEHLVRDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYA 836

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+DP WL+++ASRRQKWIDQAQSLNLY+   SGKKLD +Y+ AW+ GLKTTYYLR+ 
Sbjct: 837 TAFEMDPKWLVDAASRRQKWIDQAQSLNLYMAGASGKKLDELYKYAWVRGLKTTYYLRTL 896

Query: 907 SATSVEKST-----LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +ATS EKST     L  V     AV       +T +         + +CE CQ
Sbjct: 897 AATSAEKSTGRGGELNAVSATTPAVSAAPEVDNTPATDAKFCSIDNPDCEACQ 949


>gi|90425008|ref|YP_533378.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB18]
 gi|90107022|gb|ABD89059.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           BisB18]
          Length = 960

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/947 (62%), Positives = 732/947 (77%), Gaps = 9/947 (0%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS+         G ++I+RNG VT FDP+KI+ A+ KAF+AVEG  A+ S R+ D++  L
Sbjct: 15  PSVVEHVTAANPGYRLIRRNGTVTRFDPTKITLALTKAFLAVEGSSAASSRRIHDVVGGL 74

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           T+Q V+ L +         IED+QDQVE +LM+  +HK+ R YVLYRE+R+  R   + +
Sbjct: 75  TQQIVSSLTRRADLGHTFLIEDVQDQVELALMRGEYHKVARAYVLYREDRAKQRIESAQN 134

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
               P +P L++   DG ++  ++ RL  +VEEAC+GL DV +  VLSET +N+YDG+S 
Sbjct: 135 AQLEPASP-LRVTATDGIVVPLDAVRLAAVVEEACAGLDDVRASQVLSETRRNLYDGISL 193

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +L  A I ++RTLIE EPNYAKV+AR LL+KLRRE L+ V  +P++ATH EM   Y +Y
Sbjct: 194 DELALAPILAARTLIETEPNYAKVSARLLLDKLRREALSFVAGRPEQATHAEMAGRYGDY 253

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  YI  G+ + LL   +  FDLV L+  LK ERD  F+YLGLQ LYDRYFLH++G+R E
Sbjct: 254 FKAYIATGIASELLDRELGRFDLVRLSAALKPERDLQFDYLGLQTLYDRYFLHVDGTRFE 313

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQAFFMRVA GLAL+E ++E +A+EFY LLSSF FM STPTLFN+GT  PQLSSCFLTT
Sbjct: 314 LPQAFFMRVACGLALREIDREDKAIEFYELLSSFDFMASTPTLFNAGTLRPQLSSCFLTT 373

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDTA
Sbjct: 374 VPDDLDGIFKSIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTA 433

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AVNQGGKRKGAVCAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFM RV Q
Sbjct: 434 IAVNQGGKRKGAVCAYLETWHIDIEQFLDLRKNTGDDRRRTHDMNTANWVPDLFMTRVEQ 493

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           + GWTLFSPDE  DLHDL G+ F   YE YE +A+RGE++VF+++ A  LWRKMLTMLFE
Sbjct: 494 DGGWTLFSPDETPDLHDLTGQAFVERYEQYEAKAERGEMRVFKRLRAADLWRKMLTMLFE 553

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S+ E AVCNLGSINL+ H  N  
Sbjct: 554 TGHPWITFKDPCNLRSPQSHAGVVHSSNLCTEITLNTSTTEVAVCNLGSINLVNHLVNGA 613

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+ +LA ++ T +R+LDNV+D+N +TI +A+ SN  HR +GLG+MGFQ AL++L +PYA
Sbjct: 614 IDHARLARSVGTGMRMLDNVLDVNFYTIPEARSSNLKHRPVGLGIMGFQDALNILRLPYA 673

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734
           S +AV  ADESME +S+ AISASV+LA ERG Y SF+GSLW +GV P+DSI  +   R  
Sbjct: 674 SEQAVAFADESMESVSYWAISASVDLAAERGRYPSFEGSLWSKGVLPLDSIARVDAARAL 733

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + ++R+ RL WD L+ RVK +GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN
Sbjct: 734 PVEVDRSFRLDWDGLRARVKAVGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLYVKSN 793

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           MSGDFTVVN++LVN+LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEID  
Sbjct: 794 MSGDFTVVNTYLVNDLKARGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDSA 853

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           WLIE+A+RRQKWIDQ+QSLNLYL  P+GKKLD +YR AW  GLKTTYYLRSRSAT VEKS
Sbjct: 854 WLIEAAARRQKWIDQSQSLNLYLANPNGKKLDALYRLAWRRGLKTTYYLRSRSATHVEKS 913

Query: 915 TLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECEVCQ 954
           TLKG DGKLNAV       +         ++   +    D  CEVCQ
Sbjct: 914 TLKGTDGKLNAVSAGLAMDTPRAVAVACGAVAGQACAIDDPTCEVCQ 960


>gi|261855610|ref|YP_003262893.1| ribonucleotide-diphosphate reductase subunit alpha
           [Halothiobacillus neapolitanus c2]
 gi|261836079|gb|ACX95846.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halothiobacillus neapolitanus c2]
          Length = 957

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/952 (58%), Positives = 699/952 (73%), Gaps = 9/952 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
                    A  S           ++VI+RNG VT+FD SKI  A+ KAF+AVEG GA+ 
Sbjct: 13  PTTAHSAPSAAHSTIDTAATTPGQLRVIRRNGKVTAFDDSKIKVAMTKAFLAVEGSGAAV 72

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S+RV D++  L++Q  + L +       VHIEDIQDQVE +LM+ GHHK+ R YVLYRE 
Sbjct: 73  SMRVHDLVNALSDQISSALKRRAPGGGTVHIEDIQDQVELALMREGHHKVARAYVLYREH 132

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           ++  RAA++  ++   I   L +   DGT    +  RL  ++ EACS L DV    VL E
Sbjct: 133 QAQKRAAEAPDQATPEI--VLNVTHADGTRSPLDHVRLNALIGEACSNLTDVDPNAVLQE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T +N++DG+ E ++ TAL+ S+RTLIEK+PNY+ V AR LL+ +R E L    +     T
Sbjct: 191 TLRNLFDGVPEKEVNTALVMSARTLIEKDPNYSFVAARLLLDGIRSEALRFTKQPVTVCT 250

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             E+  L+ +YF  YI  G++  LL  ++  +D+  L + +   RD  F YLGLQ LYDR
Sbjct: 251 QSELSGLFADYFQSYINTGIEHELLDPTLRQYDIKRLTDAIDTSRDLQFSYLGLQTLYDR 310

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH  G R E+PQAFFMRVAMGLA+ E ++E  A+EFY LLSSF FM STPTLFNSGT 
Sbjct: 311 YFLHEGGVRFELPQAFFMRVAMGLAINEIDRETHAIEFYKLLSSFDFMSSTPTLFNSGTL 370

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GIF A+++NA+L+K++GGLGNDW+ VR L +HI GTNGKSQGV
Sbjct: 371 RPQLSSCYLTTVPDDLDGIFAAIKDNALLSKFAGGLGNDWSRVRALSSHIKGTNGKSQGV 430

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW
Sbjct: 431 VPFLKVANDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANW 490

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PDLFMKRV +   WTLFSP +  DLHDL G  FE AY  YE + DRGE+K FR+I A  
Sbjct: 491 VPDLFMKRVMEEGEWTLFSPADCPDLHDLTGLAFEKAYTAYEARVDRGEMKNFRRIKATN 550

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML+MLFETGHPWITFKDPCN+R   QH GVVHSSNLCTEITL+++ +E AVCNLGS
Sbjct: 551 LWRKMLSMLFETGHPWITFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDQEIAVCNLGS 610

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL  H   N  D +KLA TI+TA+R+LDNVI+ N +++ +A+ SN  HR +GLG+MGFQ
Sbjct: 611 VNLAQHVTENGLDQEKLARTIKTAMRMLDNVIEYNYYSVPQARNSNLRHRPVGLGIMGFQ 670

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            ALH+  IPY+S +A+E AD SME +S++AISAS +LA ERG Y SF+GSLW +G+ PID
Sbjct: 671 DALHIQKIPYSSEQAIEFADRSMETVSYYAISASSDLAAERGRYQSFEGSLWSRGILPID 730

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           SI LLAE R   L MNR + L W+ ++ ++K  GMRNSN MAIAPTATI+NICGV+QSI+
Sbjct: 731 SIDLLAEARGKYLVMNRDTTLDWEAVRAKIKVQGMRNSNTMAIAPTATISNICGVAQSIE 790

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P+++NL+VKSN+SG+FTV+N +LV +LK  DLWDE M++DLKY DGS+  I+RIPD LK 
Sbjct: 791 PTFENLFVKSNLSGEFTVINPYLVRDLKALDLWDEVMVNDLKYFDGSVQQIDRIPDSLKA 850

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++ATAFE++P WLIE+ SRRQKWIDQAQSLNLYL +PSG KLD +Y+ AWL+GLKTTYYL
Sbjct: 851 LYATAFEVEPRWLIEAGSRRQKWIDQAQSLNLYLADPSGPKLDQMYKNAWLVGLKTTYYL 910

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954
           R+ S T VEK+T+  +DGKL  V          +  +P +C   D  CE CQ
Sbjct: 911 RASSKTRVEKTTMTKLDGKLRGVSAD-----PIAEALPKACAIDDPGCEACQ 957


>gi|88705572|ref|ZP_01103282.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
 gi|88700085|gb|EAQ97194.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
          Length = 969

 Score = 1000 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/945 (58%), Positives = 695/945 (73%), Gaps = 11/945 (1%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
            +   ++   P +   ++VIKRNG V  F+ SKIS AI KAF+AVEG  A+ S R+ + +
Sbjct: 33  ASAAEVSATAPGQ---LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAAASSRIHETV 89

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LTE       +   S   +HIED+QDQVE SLM++G HKI R+YV+YRE+++  RAA+
Sbjct: 90  AKLTEMVTATFKRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREQQASKRAAR 149

Query: 133 SH-SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
              S      A ++ ++  DG+    + +RL +IV EAC+GL DVS   +L E  +N+YD
Sbjct: 150 QSLSAETQEAADRINVVQLDGSKAPLDLERLHIIVSEACAGLDDVSETRILDEALRNLYD 209

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+S  +L T+L+ ++RTLIE+EPNY   +AR L + LR E L +       AT  +M  L
Sbjct: 210 GVSMQELSTSLVITARTLIEQEPNYTYASARLLCDNLRTEAL-SFLGVADSATQGDMDRL 268

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           Y +    YI  GV+  LL  ++ ++DL  +   +  ERD  F YLGLQ LYDRYF+H + 
Sbjct: 269 YAKALPAYIARGVELELLDPTLAEYDLERMGKAILPERDLQFTYLGLQTLYDRYFIHSDE 328

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            R E+PQ FFMRVAMGLA++ET++E RA+EFY LLSSF +M STPTLFN+GT  PQLSSC
Sbjct: 329 VRFELPQIFFMRVAMGLAVEETDREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSC 388

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV 
Sbjct: 389 YLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVV 448

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMK
Sbjct: 449 NDTAVAVNQGGKRKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMK 508

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  +  WTLFSP++V DLHDLYGK FE  Y  YE  A  GE+K  + + A  LWRKML 
Sbjct: 509 RVFDDGDWTLFSPNDVPDLHDLYGKAFEERYCAYEAMAATGELKYSKTVKAQNLWRKMLG 568

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL  H 
Sbjct: 569 MLFETGHPWMTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHV 628

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             N  + +KLA T+RTAVR+LDNVIDIN ++++ A+ SN  HR +GLGLMGFQ AL+  H
Sbjct: 629 DENGLNLEKLAETVRTAVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQH 688

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S +AV  AD SME IS++AI AS +LA+ERGAY S++GSLW QG+ PIDS+G L E
Sbjct: 689 IAYGSEDAVTFADRSMEAISYYAIDASSKLAEERGAYESYEGSLWSQGILPIDSLGKLVE 748

Query: 732 VRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            R    + ++ +  + W  L++ VK  GMRNSN MAIAPTATIANI GVSQSI+P+YQNL
Sbjct: 749 ERGSDYIKVDDSMTMDWTSLREAVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNL 808

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YVKSN+SG+FTVVN +LVN+LK R LWD  M++DLKY+DGS+  IERIP DL+ I++ AF
Sbjct: 809 YVKSNLSGEFTVVNPYLVNDLKVRGLWDSVMVNDLKYYDGSVQAIERIPADLRAIYSNAF 868

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           E++P W++E ASRRQKWIDQAQSLNLY++  SGKKLD  YR AW  GLKTTYYLRS +AT
Sbjct: 869 EVEPRWIVECASRRQKWIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAAT 928

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             EKST+    G+LNAV      +             D +CE CQ
Sbjct: 929 GTEKSTID--TGQLNAVSSESAPAPAPVPMA--CSLDDPDCEACQ 969


>gi|330504345|ref|YP_004381214.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
 gi|328918631|gb|AEB59462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
          Length = 968

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/966 (57%), Positives = 707/966 (73%), Gaps = 24/966 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           + V     ++   LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QAVTPQAAESSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YRE 
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           ++  R A + S+   P  P ++I    G +   +  RL+ I+ EAC GL +V   ++  E
Sbjct: 128 QASKRKASAGSEIAQP-HPSIRITNAAGEVQPLDMGRLQTIIREACEGLAEVDGSLIERE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E L+ +      AT
Sbjct: 187 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEALSFLSIAAS-AT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+E+GV+  LL   +  FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVEKGVEFELLDAKLKTFDLEKLGAAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           YF+H +G R E+PQ FFMRVAMGLA++E   +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 306 YFIHKDGIRFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGT 365

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTAN
Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTAN 485

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV ++  WTLFSP EV DLHDL GK FE  YE YE   + G+IK+++ I A 
Sbjct: 486 WIPDLFMKRVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL+ H  + + D +KL  T++TAVR+LDNVIDIN +++++A+ SN  HR +GLGLMGF
Sbjct: 606 SVNLVNHIVDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVDQARNSNLKHRPVGLGLMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HI Y S  A+E AD+SME IS++AI AS +LA ERG+YS+F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIAYGSDAAIEFADKSMEAISYYAIQASCDLADERGSYSTFEGSLWSKGILPL 725

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  LL E R    + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GVSQS
Sbjct: 726 DSQQLLIEARGQKYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIIGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY+DGS+  IERIP DL
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------------SSTHSLGIPSSCTSDT 948
           YLR+ +ATS EKST+    GKLNAV                   +   +    +    + 
Sbjct: 905 YLRALAATSTEKSTIN--TGKLNAVSAGGDEGFSAKAQAPAQQAAPAPAPVPKACAIDEP 962

Query: 949 ECEVCQ 954
           +CE CQ
Sbjct: 963 DCEACQ 968


>gi|229592128|ref|YP_002874247.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens SBW25]
 gi|229363994|emb|CAY51541.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           fluorescens SBW25]
          Length = 964

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/961 (57%), Positives = 700/961 (72%), Gaps = 18/961 (1%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +       D+   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 11  QGSVPQAADSNLDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDA-PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
           R+  RA ++ ++  A    P ++I + DGT    +  RL  I+ EAC GL++V   ++  
Sbjct: 128 RAKERAVRTPAEEAAVQAHPSIRITLADGTFAPLDLGRLNTIITEACEGLEEVDGDLIQR 187

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 188 ETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 246

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    YI +G++  LL+  +  FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 247 THHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYD 306

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  KE RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 307 RYFIHKDGIRFELPQVFFMRVAMGLAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGT 366

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 367 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 426

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 427 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 486

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK FE  YE YE      G+IK+F+ I A
Sbjct: 487 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFEERYEYYEALSQYPGKIKLFKTIQA 546

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 547 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 606

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D  KL  T+ TAVR+LDNVIDIN +++ +A+ SN  HR +GLG+MG
Sbjct: 607 GSINLPNHIVNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMG 666

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 667 FQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 726

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 727 LDSQQILIEQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 785

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY+DGS+  IERIP +
Sbjct: 786 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQE 845

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 846 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 905

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECEVC 953
           YYLR+ +ATS EKST+    GKLNAV   +    +        +    +    + +CE C
Sbjct: 906 YYLRALAATSTEKSTIN--TGKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEAC 963

Query: 954 Q 954
           Q
Sbjct: 964 Q 964


>gi|192361574|ref|YP_001982049.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio
           japonicus Ueda107]
 gi|190687739|gb|ACE85417.1| ribonucleoside reductase, large chain [Cellvibrio japonicus
           Ueda107]
          Length = 978

 Score =  997 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 564/976 (57%), Positives = 718/976 (73%), Gaps = 31/976 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +   +  D      L+   P +   ++VIKRNG V  FD SKI+ A+ KAF+AVEG  A+
Sbjct: 9   TSTSSHADLSNNNGLSATAPGQ---LRVIKRNGTVVPFDASKIAIAMTKAFLAVEGGTAA 65

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S RV++ + NLT+Q      +   S   +HIE+IQDQVE  LM++G  K+ R+YVLYRE
Sbjct: 66  ASTRVRETVDNLTKQITATFKRRMPSGGTIHIEEIQDQVELILMRAGEQKVARDYVLYRE 125

Query: 124 ERSDVRAAQSHSK--SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           E + +R AQ         P  P + +   DGT    +  R+  IV EAC+GL  V  K +
Sbjct: 126 EHARLRRAQKEVNKTEADPDYPAMSVTQADGTRAPLDIARMRTIVSEACAGLAGVEEKAI 185

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L E  +N+YDG++E D+ T+L+ ++RTL+EKEPNY   TAR LL+KLR E L  +   P 
Sbjct: 186 LDEAMRNLYDGVAEKDVNTSLVITARTLVEKEPNYTYATARLLLDKLRAEALGFLGVAPS 245

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            AT  +M+  Y      YI++GV+  L+   +++FDL  L   L  +RD  F YLGLQ L
Sbjct: 246 -ATQSDMELYYARALPVYIQKGVELELISPELLNFDLDKLGKALIADRDLQFTYLGLQTL 304

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H + +RIE+PQ FFMRVAMGLAL+E ++E+RA+EFY LLSSF +M STPTLFNS
Sbjct: 305 YDRYFIHSDSTRIELPQIFFMRVAMGLALQEDKREERAIEFYRLLSSFDYMSSTPTLFNS 364

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGKS
Sbjct: 365 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRGLGAYIKGTNGKS 424

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNT
Sbjct: 425 QGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHMDVEEFLELRKNTGDDRRRTHDMNT 484

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLFMKRV ++  WTLFSP++V DLHDLYGK FE  YE+YE+ A +G++++F+ + 
Sbjct: 485 ANWVPDLFMKRVFEDQEWTLFSPNDVPDLHDLYGKAFEERYEHYEQLAAQGKVRLFKTVR 544

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVC 600
           A+ LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+ + +E AVC
Sbjct: 545 ALDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTKAGDEIAVC 604

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL  H  N + D  KL  T+ TA+R+LDNVIDIN + ++ +K+SN  HR IGLG+
Sbjct: 605 NLGSVNLAQHIVNGKLDLAKLEKTVSTAIRMLDNVIDINYYAVDTSKQSNLRHRPIGLGI 664

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+   I Y+S  AV+ AD SME +S++AI AS +LAQERG YS+F+GSLW +GV
Sbjct: 665 MGFQDALYEQRIAYSSQAAVDFADTSMEAVSYYAIKASCQLAQERGKYSTFEGSLWSKGV 724

Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDSI +LA+ R    + ++R+    WD L+  VKT GMRNSN MAIAPTATI+NI GV
Sbjct: 725 LPIDSIDILAQNRGENYIKVDRSKTFDWDSLRTEVKTKGMRNSNVMAIAPTATISNITGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD  M++DLKY++GS+  I+RIP
Sbjct: 785 TQSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVQKIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           +D+K I+ATAFE++P W++ESASRRQKWIDQAQSLNLY+   +GKKLD  YR AW  GLK
Sbjct: 845 EDMKAIYATAFEVEPKWIVESASRRQKWIDQAQSLNLYIAGANGKKLDITYRMAWYSGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVT-------------------DPNSSTHSLG 939
           TTYYLR+ +AT+ EKST+    G LNAV  T                   +  S   +  
Sbjct: 905 TTYYLRALAATTTEKSTIN--TGALNAVSATGNSGLSAAPAAAKPVVADIEEASFAEAAP 962

Query: 940 IPSSCTSD-TECEVCQ 954
           +P +C+ D  +CE CQ
Sbjct: 963 VPKACSIDNPDCEACQ 978


>gi|146282011|ref|YP_001172164.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri A1501]
 gi|145570216|gb|ABP79322.1| ribonucleoside reductase, large chain [Pseudomonas stutzeri A1501]
          Length = 961

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/968 (57%), Positives = 704/968 (72%), Gaps = 21/968 (2%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M              P LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG 
Sbjct: 1   MQNQSTRENPLSADAPDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGG 57

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+
Sbjct: 58  NAAASSRIHDTVARLTEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVI 117

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YRE ++  R + S S   A   P +++   DG+    +  RL+ I+ EAC GL +V   +
Sbjct: 118 YREAQAVKRKSASGSSDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGAL 177

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L       
Sbjct: 178 IERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALG-FLGVA 236

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           + ATHHEM  LY +    YIE+GV+  LL   +  +DL  L   L +ERD  F YLGLQ 
Sbjct: 237 ESATHHEMADLYAKALPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQT 296

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H +  R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN
Sbjct: 297 LYDRYFIHKDNVRFELPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFN 356

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGK
Sbjct: 357 AGTLRPQLSSCYLTTVPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGK 416

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 417 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 476

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV  +  WTLFSP +V DLHDL G+ FE  YE YE     G+IK+F+ +
Sbjct: 477 TANWIPDLFMKRVFDDGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTL 536

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 537 PAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 596

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL+ H  + + D  KL  T+RTAVR+LDNVIDIN +++ +A+ +N  HR +GLG+
Sbjct: 597 NLGSINLVNHIVDGKLDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGI 656

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L HI Y S  A++ AD+SME IS+ AI AS +LA ERGAYSSF+GSLW +G+
Sbjct: 657 MGFQDALYLQHIAYGSDAAIDFADKSMEAISYFAIQASCDLADERGAYSSFEGSLWSKGI 716

Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            P+DS  +L E R    + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GV
Sbjct: 717 LPLDSQQILIEARGQKYIDVDLSESLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGV 775

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTV+N +LV++LK R LWD  M++DLKY+DGS+  IERIP
Sbjct: 776 SQSIEPTYQNLYVKSNLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIP 835

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLK
Sbjct: 836 QDLKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 895

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD-----------PNSSTHSLGIPSSCTSD 947
           TTYYLR+ +ATS EKST+    GKLNAV                 +      +P +C+ D
Sbjct: 896 TTYYLRALAATSTEKSTIN--TGKLNAVSSGGSEAANSASAAPAAAEPKPAPVPLACSID 953

Query: 948 -TECEVCQ 954
             +CE CQ
Sbjct: 954 NPDCEACQ 961


>gi|327480259|gb|AEA83569.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri DSM 4166]
          Length = 960

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/967 (57%), Positives = 704/967 (72%), Gaps = 20/967 (2%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M              P LA   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG 
Sbjct: 1   MQNQSTRENPLSADAPDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGG 57

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+
Sbjct: 58  NAAASSRIHDTVARLTEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVI 117

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YRE ++  R + S S   A   P +++   DG+    +  RL+ I+ EAC GL +V   +
Sbjct: 118 YREAQAVKRKSASGSSDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGAL 177

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L       
Sbjct: 178 IERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALG-FLGVA 236

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           + ATHHEM  LY +    YIE+GV+  LL   +  +DL  L   L +ERD  F YLGLQ 
Sbjct: 237 ESATHHEMADLYAKALPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQT 296

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H +  R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN
Sbjct: 297 LYDRYFIHKDNVRFELPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFN 356

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGK
Sbjct: 357 AGTLRPQLSSCYLTTVPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGK 416

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 417 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 476

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV  +  WTLFSP +V DLHDL G+ FE  YE YE     G+IK+F+ +
Sbjct: 477 TANWIPDLFMKRVFDDGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTL 536

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 537 PAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 596

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL+ H  + + D  KL  T+RTAVR+LDNVIDIN +++ +A+ +N  HR +GLG+
Sbjct: 597 NLGSINLVNHIKDGKLDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGI 656

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L HI Y S  A++ AD+SME IS++AI AS +LA ERGAYSSF+GSLW +G+
Sbjct: 657 MGFQDALYLQHIAYGSDAAIDFADKSMEAISYYAIQASCDLADERGAYSSFEGSLWSKGI 716

Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            P+DS  +L E R    + ++ +  L W  +++RVK  G+RNSN MAIAPTATI+NI GV
Sbjct: 717 LPLDSQQILIEARGQKYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIVGV 775

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTV+N +LV++LK R LWD  M++DLKY+DGS+  IERIP
Sbjct: 776 SQSIEPTYQNLYVKSNLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIP 835

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK ++ATAFE++  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLK
Sbjct: 836 QDLKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 895

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP-----------SSCTSD 947
           TTYYLR+ +ATS EKST+    GKLNAV      ++  +   P           +    +
Sbjct: 896 TTYYLRALAATSTEKSTIN--TGKLNAVSSGGSEAANSASAAPAAEPKPAPVPLACSIDN 953

Query: 948 TECEVCQ 954
            +CE CQ
Sbjct: 954 PDCEACQ 960


>gi|34497742|ref|NP_901957.1| ribonucleotide-diphosphate reductase subunit alpha [Chromobacterium
           violaceum ATCC 12472]
 gi|34103598|gb|AAQ59959.1| ribonucleoside-diphosphate reductase system [Chromobacterium
           violaceum ATCC 12472]
          Length = 972

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/954 (57%), Positives = 692/954 (72%), Gaps = 20/954 (2%)

Query: 9   KGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
           +G   A    A          + I+RNG V  F+P KIS A+ KAF+AV G   + S  +
Sbjct: 31  EGQTAAELGRAAAPQADFSLYKTIRRNGAVVPFEPVKISIAMTKAFLAVMGNQGATSASI 90

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
           +D +  LTEQ V  L++       +HIEDIQDQVE SLM+ G H + R YVLYRE+RS  
Sbjct: 91  RDKVAQLTEQVVNALMRRKPEGGAIHIEDIQDQVELSLMRFGEHDVARAYVLYREQRSQE 150

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           RAA+  + +      ++ ++  DG  +  +  RL   +E A   L  +    +L+ET KN
Sbjct: 151 RAARGEALTSV----QINVLRKDGRKLPLDVPRLRASIEAASKNLAGIDVDAILAETLKN 206

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG+ E ++  + I ++R++IE++P Y  VTAR L+  +R E+L       +  +  EM
Sbjct: 207 IYDGVPEEEVGKSAILAARSMIEQDPAYDYVTARLLMGNIRLEILG------EAVSQDEM 260

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y  YF  YI++G+ A LL E + ++DL  L   L  ERD  F YLGLQ LYDRYFLH
Sbjct: 261 GKQYAPYFADYIKKGIAAELLDEKLAEYDLKKLGAALDAERDLQFGYLGLQTLYDRYFLH 320

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           ++G+RIEMPQAF+MRVAMGLAL E  +E RA+EFY +LSSF FM STPTLFNSGTR  QL
Sbjct: 321 VDGTRIEMPQAFYMRVAMGLALNEVNREDRAIEFYKVLSSFDFMSSTPTLFNSGTRRSQL 380

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC+LTT+ DDL GI+  ++ENA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFL
Sbjct: 381 SSCYLTTIADDLDGIYEGIKENALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFL 440

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV NDTAVAVNQGGKRKGAVCAYLETWH D+EEFL+LRKNTGDDRRRTHDMNTANWIPDL
Sbjct: 441 KVVNDTAVAVNQGGKRKGAVCAYLETWHADIEEFLELRKNTGDDRRRTHDMNTANWIPDL 500

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV +   W+LFSP E  DLHDLYG+ FE AY  YE +  RGE+KV+++I A++LWRK
Sbjct: 501 FMKRVMEGGDWSLFSPSETPDLHDLYGQAFEKAYTAYEARGARGELKVYKRIPALSLWRK 560

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607
           MLTMLFETGHPW+TFKDPCNIRSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL 
Sbjct: 561 MLTMLFETGHPWVTFKDPCNIRSPQQHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLS 620

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +   D DKL  TIRTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  L
Sbjct: 621 AHLKEDGSLDADKLQRTIRTALRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCL 680

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           H+  +PY S  AVE ADESME +++ A  AS ELA+ERG Y S+ GSLWD+GV P DSI 
Sbjct: 681 HIKRVPYGSNAAVEFADESMEMVAYFAYLASTELAEERGRYPSYSGSLWDRGVLPHDSIN 740

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LLA  R   L ++RT R+ W++L++R+K  GMRNSNC+AIAPTATIANI GVS SI+P+Y
Sbjct: 741 LLAAERGGYLEVDRTERMDWNKLRERIKQHGMRNSNCLAIAPTATIANIIGVSASIEPTY 800

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNL+VKSN+SG+FTV N +LV +LK   LWDE M++DLKY DGS+G I+R+P +LK I+A
Sbjct: 801 QNLFVKSNLSGEFTVTNEYLVRDLKAAGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYA 860

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+DP WL+E+ASRRQKWIDQAQSLNLY+   SGKKLD +Y+ AWL GLKTTYYLR+ 
Sbjct: 861 TAFEVDPKWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDELYKHAWLRGLKTTYYLRTL 920

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS------THSLGIPSSCTSDTECEVCQ 954
           +ATS EKST +G  G+LNAV      +       T +         + +CE CQ
Sbjct: 921 AATSAEKSTGRG--GELNAVSSQAQTAPAAAVDNTPATDAKFCSIDNPDCESCQ 972


>gi|254428366|ref|ZP_05042073.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Alcanivorax sp. DG881]
 gi|196194535|gb|EDX89494.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Alcanivorax sp. DG881]
          Length = 962

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 565/959 (58%), Positives = 715/959 (74%), Gaps = 18/959 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+ D N  D+    SLA   P +   ++VIKRNG V S+D  KI+ AI KAF+AVEG  A
Sbjct: 15  PASDSNDQDQ----SLASTAPGQ---LRVIKRNGKVVSYDDDKITVAISKAFLAVEGGTA 67

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YVLYR
Sbjct: 68  AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127

Query: 123 EERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           E+++  RAA+  S   AP     + + M+DG+    +  RLE ++  ACSGL+DV++  +
Sbjct: 128 EQQASKRAAEHSSDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADKI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET KN+YDG+S  D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L       +
Sbjct: 188 ITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEAL-QFLNVAE 246

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +A+H EM  LY E    YI +G++  LL   + ++DL  L   L   RD  F YLGLQ L
Sbjct: 247 RASHDEMNALYGEALKAYIGKGIELELLSPQLAEYDLDKLGAALDGNRDLQFSYLGLQTL 306

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H N +RIE+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+
Sbjct: 307 YDRYFIHHNDTRIELPQCFFMRVAMGLAVEEDNREARAIEFYNLLSSFDYMSSTPTLFNA 366

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+S
Sbjct: 367 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGRS 426

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN+
Sbjct: 427 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNS 486

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV     WTLFSP++  DLHDLYG+ FE AY  YE +   GE+K+F+++ 
Sbjct: 487 ANWIPDLFMKRVINEEDWTLFSPNDAPDLHDLYGEAFEKAYLEYEAKTRSGELKLFKRLP 546

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVCN
Sbjct: 547 AINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVCN 606

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL  H   N  D +KL  TI TAVR+LDNVIDIN +++ +A++SN  HR +GLG+M
Sbjct: 607 LGSVNLAQHVDENGLDIEKLQGTINTAVRMLDNVIDINYYSVPQAERSNMKHRPVGLGIM 666

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+   I YAS +AV  AD SME +S++AI AS +LA+ERGAY +F GSLW QGV 
Sbjct: 667 GFQDALYKQGISYASSDAVTFADNSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGVL 726

Query: 722 PIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDSI +L   R      ++R+  L WD ++   K  GMRNSN MAIAPTATIANI GVS
Sbjct: 727 PIDSIEILVNQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGVS 785

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV+ LK+R LWD  M++DLKY+DGS   IERIP 
Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVSALKERGLWDNVMVNDLKYYDGSAQPIERIPA 845

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+   TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD  Y+ AWL+GLKT
Sbjct: 846 DLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLKT 905

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCT-SDTECEVCQ 954
           TYYLR+  AT  EKST+   DGKLN V       +     +  +P +C+  D +CE CQ
Sbjct: 906 TYYLRAIGATQTEKSTIN--DGKLNRVSSKVEEPAAEFGQAADVPQACSLDDPDCEACQ 962


>gi|88812073|ref|ZP_01127325.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790577|gb|EAR21692.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
          Length = 955

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/954 (58%), Positives = 710/954 (74%), Gaps = 14/954 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           P   +      + P+ ++  PE   + + VI+R+G V+ FDP KI+ A+ KA++AVEG  
Sbjct: 14  PEVTMPAQSAVSLPAESFEHPESRARDLHVIRRDGQVSGFDPGKITVAMTKAYLAVEGAN 73

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           AS S R+++ ++ L  Q V  L +   +   VHIEDIQDQVE +LM++G H++ R YVLY
Sbjct: 74  ASGSQRIRETVERLVGQVVEALTRRQPAGGRVHIEDIQDQVELALMRAGEHRVARAYVLY 133

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           REER+  R  Q+     A  A +L++   DG  +  +  RL  IVEE+C  +  V  + +
Sbjct: 134 REERARARQDQAEPV--AAQAERLRVTRADGGQVPLDEARLRRIVEESCQRIAGVEPEAI 191

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET++N+YDG+ E++L TAL+  +RTLIE+EP Y+ V A  LL+ LRRE L+ +     
Sbjct: 192 VAETHRNLYDGIPEAELGTALVMCARTLIEREPGYSYVAAGLLLDTLRREALSFLGGVEA 251

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            AT  EM   YP+YF  Y+  GV+  LL   +++FDL  LA  L+  RD  F YLGLQ L
Sbjct: 252 GATFEEMAKRYPDYFIAYVRRGVELELLDPRLLEFDLERLARVLEPARDRQFGYLGLQTL 311

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH +G+  E+PQAFFMRVAMGLAL E ++E+RA EFY LL+SF FM STPTLFN+
Sbjct: 312 YDRYFLHYDGTHFELPQAFFMRVAMGLALNEIDREERAAEFYRLLASFDFMSSTPTLFNA 371

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GTR PQLSSC+L+T+PDDL GI+ A+++NA+L+K++GGLGNDWTPVR LGAHI GTNG+S
Sbjct: 372 GTRRPQLSSCYLSTIPDDLDGIYSAIRDNALLSKFAGGLGNDWTPVRALGAHIKGTNGRS 431

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKVANDTAVAVNQGG+R+GAVCAYLE WH+D+EEFL+LRKNTGD+RRRTHDMNT
Sbjct: 432 QGVVPFLKVANDTAVAVNQGGRRRGAVCAYLEIWHLDIEEFLELRKNTGDERRRTHDMNT 491

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLFM+RV   A WTLFSPDE  DLHDLYG  FE  Y  YE QA+RGE++ ++++S
Sbjct: 492 ANWVPDLFMRRVIDEADWTLFSPDETPDLHDLYGAAFEAHYREYEAQAERGELRNYKRVS 551

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AVALWR+ML+MLFETGHPWITFKD CN RSPQQH GVVHSSNLCTEITLN+S +E AVCN
Sbjct: 552 AVALWRRMLSMLFETGHPWITFKDACNARSPQQHTGVVHSSNLCTEITLNTSDDEIAVCN 611

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NL AH      D  +L  T+RTA+R+LDNVIDIN +++ +A+++N  HR +GLG+M
Sbjct: 612 LGSVNLAAHVGAEGIDAARLERTVRTAMRMLDNVIDINWYSVPQARRANMRHRPVGLGVM 671

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ L +PYAS EAV+ AD SME IS++AI AS ELAQERGAY+SF GSLW +G+ 
Sbjct: 672 GFQDALYRLGLPYASREAVDFADRSMETISYYAIQASSELAQERGAYASFAGSLWSRGIL 731

Query: 722 PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PIDSI LLAE R   L M+ ++ L WD L++R++  GMRNSNC+AIAPTATIANI GVS 
Sbjct: 732 PIDSIRLLAEQRGEPLTMDTSTTLDWDALRERIRRTGMRNSNCLAIAPTATIANIVGVSP 791

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+Y+NLYVKSN+SG+FTVVN  LV  LK R LWD  +++DLKY DGS+  IER+P+ 
Sbjct: 792 SIEPTYRNLYVKSNLSGEFTVVNPHLVEALKARGLWDAVLVNDLKYFDGSVQAIERVPEP 851

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K ++ TAFEIDP WL+E+ASRRQKW+DQ+QSLNLY+ E SG KLD +YR AW  GLKTT
Sbjct: 852 IKALYTTAFEIDPNWLVEAASRRQKWLDQSQSLNLYMAEASGPKLDALYRNAWRRGLKTT 911

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRS  AT VEKST+   DG LN V       +            D ECE CQ
Sbjct: 912 YYLRSLGATHVEKSTV--ADGALNRVAAAPAAPACAV--------DDPECEACQ 955


>gi|254784924|ref|YP_003072352.1| ribonucleotide-diphosphate reductase subunit alpha [Teredinibacter
           turnerae T7901]
 gi|237686086|gb|ACR13350.1| ribonucleoside-diphosphate reductase alpha subunit, class I
           [Teredinibacter turnerae T7901]
          Length = 961

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 563/958 (58%), Positives = 716/958 (74%), Gaps = 12/958 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+  V + +  +  S+A   P +   ++VIKRNG +  +   KI+ A+ KAF+AVEG  A
Sbjct: 10  PTSPVPQANPHSNSSIANAAPGQ---LRVIKRNGTLVPYTDDKIAVAMTKAFLAVEGGTA 66

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + + NLT+Q      +   S   +HIE+IQDQVE +LM++G HK+ R+YVLYR
Sbjct: 67  AASSRIHETVANLTQQISATFKRRMPSGGTIHIEEIQDQVELTLMRTGEHKVARDYVLYR 126

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
            ER+ +RA +          P++ ++  DG+L   +  RL  +V EAC+GL+DV  + +L
Sbjct: 127 AERAKLRAEKEKLSQANVDFPEINVLQPDGSLQPLDVMRLHTVVSEACAGLKDVDGEAIL 186

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            E  +N+Y+G+S  DL T+L+ S+RTL+EKEPNY   TAR L++KLR E L        +
Sbjct: 187 KEAMRNLYEGVSAEDLNTSLVISARTLVEKEPNYTYATARLLMDKLRAEAL-AFLDVATQ 245

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
           AT  EM+  YP     YI  G++  LL  ++ DFDL  L   L  ERD  F YLGLQ LY
Sbjct: 246 ATSAEMEMFYPNALPAYISRGIELELLDPALADFDLQLLGAALIPERDQQFTYLGLQTLY 305

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH +G+R E+PQ FFMRVAMGLA++E +K  RA+EFY LLSSF +M STPTLFN+G
Sbjct: 306 DRYFLHSDGTRFELPQIFFMRVAMGLAMREDDKNGRAIEFYRLLSSFDYMSSTPTLFNAG 365

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T  PQLSSC+LT+VPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ
Sbjct: 366 TLRPQLSSCYLTSVPDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQ 425

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKVANDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 426 GVVPFLKVANDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTA 485

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NW+PDLFMKRV ++  WTLF+P  V DLHDL+G  FE  YE+YER+A  G IK F+K+ A
Sbjct: 486 NWVPDLFMKRVFEDKEWTLFTPSTVPDLHDLFGLAFEERYEHYEREAAAGNIKPFKKVRA 545

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCN 601
           V LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ + E   VCN
Sbjct: 546 VDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTKANEEIAVCN 605

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGSINL  H  + + D +KL  ++ TAVR+LDNVIDIN ++++ A+ SN  HR +GLG+M
Sbjct: 606 LGSINLAQHVVDGKLDQEKLQRSVDTAVRMLDNVIDINYYSVDTARNSNLRHRPVGLGIM 665

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ + IPY+S  AVE AD SME +S++AISAS  LA ERG+YS+F+GSLW QGV 
Sbjct: 666 GFQDALYKMRIPYSSAAAVEFADRSMEAVSYYAISASSALASERGSYSTFEGSLWSQGVL 725

Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           PIDSI LLA+ R E  +  ++T+ L WD L+  VKT GMRNSN MAIAPTATIANI GVS
Sbjct: 726 PIDSIQLLAKNRGEQFIEQDQTTTLDWDTLRNTVKTQGMRNSNVMAIAPTATIANITGVS 785

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD  M++DLKY++GS+  I+RIPD
Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVFKIDRIPD 845

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK ++ATAFE++P W++++ASRRQKWIDQAQSLNLY+   +GKKLD  YR AW  GLKT
Sbjct: 846 DLKLLYATAFEVEPRWIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYRMAWYRGLKT 905

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS--STHSLGIPSSCT-SDTECEVCQ 954
           TYYLR+ +AT+ EKST+    G LNAV    P +  S     +P +C+  D +CE CQ
Sbjct: 906 TYYLRALAATTTEKSTID--TGSLNAVSSGAPAANISAGPADVPKACSLDDPDCEACQ 961


>gi|90022103|ref|YP_527930.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharophagus
           degradans 2-40]
 gi|89951703|gb|ABD81718.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Saccharophagus degradans 2-40]
          Length = 969

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/965 (57%), Positives = 712/965 (73%), Gaps = 18/965 (1%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P       +  +  ++    P +   ++VIKRNG V  +   KIS A+ KAF+AVEG  
Sbjct: 11  KPQGSPIADNASSSSTINATAPGQ---LRVIKRNGTVVPYTDDKISVAMTKAFLAVEGGT 67

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+ + ++ LT Q      +   S   +HIE+IQDQVE +LM++G HK+ R+YV+Y
Sbjct: 68  AAASRRIHETVEGLTAQISATFKRRMPSGGTIHIEEIQDQVELTLMRAGEHKVARDYVIY 127

Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           R +R++ R  A +    +    P++ ++  +G     +  R++ +V EAC+GL+DV +  
Sbjct: 128 RAKRAEQRTPAVNVEDVNFSDFPEINVVDHNGDRHPLDIDRIKTVVAEACAGLKDVDADA 187

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L E  +++YDG+S +DL TAL+ S+RTL+EKEPNY   T+R L++KLR E L +     
Sbjct: 188 ILKEAMRSLYDGVSLTDLNTALVISARTLVEKEPNYTYATSRLLMDKLRAEAL-SFLGIA 246

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++AT  EM+ LY +    YIE+G++  L+   +  +DL  L N L  ERD  F YLGLQ 
Sbjct: 247 EEATQAEMETLYAKTLPAYIEKGIELDLISPDLASYDLNMLGNALIAERDLQFTYLGLQT 306

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH N  RIE+PQ FFMRVAMGLA  E  K +RAVEFY LLSSF +M STPTLFN
Sbjct: 307 LYDRYFLHSNDVRIELPQIFFMRVAMGLAANEENKNERAVEFYRLLSSFDYMSSTPTLFN 366

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGK
Sbjct: 367 AGTLRPQLSSCYLTTVPDDLHGIYGAMQDNAMLSKWAGGLGNDWTPVRGLGAYIKGTNGK 426

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 427 SQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 486

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANW+PDLFMKRV +   WTLFSP++V DLHDL+G+ FE  YE YERQA  G+I+V +K+
Sbjct: 487 TANWVPDLFMKRVFEEKEWTLFSPNDVPDLHDLFGRAFEDRYEEYERQAAAGKIRVHKKV 546

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-V 599
            A+ LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ + E   V
Sbjct: 547 RALDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTKANEEIAV 606

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL  H  + + D +KLA T++TAVR+LDNVIDIN + +E A+ SN  HR +GLG
Sbjct: 607 CNLGSINLAQHIVDGKLDEEKLAQTVKTAVRMLDNVIDINYYAVESARTSNMRHRPVGLG 666

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           LMGFQ AL+ ++I Y+S +AV  AD SME IS+HAI AS ELA+ERG+YS+F GSLW +G
Sbjct: 667 LMGFQDALYKMNISYSSDDAVTFADRSMEAISYHAIKASSELAKERGSYSTFDGSLWSKG 726

Query: 720 VFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           + P+DS+ LL E R E  + ++++S   WD L++ VKT GMRNSN MAIAPTATIANI G
Sbjct: 727 ILPLDSLDLLIENRGEKFIKVDKSSTHDWDTLRETVKTQGMRNSNVMAIAPTATIANITG 786

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           VSQSI+P+YQNLYVKSN+SG+FTVVN +LV++LK+R LWD  M++DLKY++GS+  I+RI
Sbjct: 787 VSQSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKERGLWDSVMVNDLKYYEGSLQKIDRI 846

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P+DLK +++TAFE++P W++E+ASRRQKWIDQAQSLNLY+   +GKKLD  YR AW  GL
Sbjct: 847 PEDLKALYSTAFEVEPRWIVEAASRRQKWIDQAQSLNLYIAGANGKKLDITYRMAWYSGL 906

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAV--------PVTDPNSSTHSLGIPSSCTSDTE 949
           KTTYYLR+ SAT+ EKST+    G LNAV                  +    +    D +
Sbjct: 907 KTTYYLRALSATTTEKSTV--TSGTLNAVSSGGGASQSAAAAAEPAPAAVPLACSLDDPD 964

Query: 950 CEVCQ 954
           CE CQ
Sbjct: 965 CEACQ 969


>gi|28868877|ref|NP_791496.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852116|gb|AAO55191.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016766|gb|EGH96822.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 970

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/969 (57%), Positives = 695/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S         A   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQAQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAGRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  TI  AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|298487944|ref|ZP_07005983.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157495|gb|EFH98576.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330986741|gb|EGH84844.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 970

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/969 (56%), Positives = 694/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S             L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|330949819|gb|EGH50079.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae Cit 7]
          Length = 970

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/968 (56%), Positives = 694/968 (71%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P                    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|221213240|ref|ZP_03586215.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD1]
 gi|221166692|gb|EED99163.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD1]
          Length = 995

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/994 (55%), Positives = 691/994 (69%), Gaps = 56/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAEQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   + +       + ++ D+G     +   L  ++  AC GL   V+  
Sbjct: 131 REKRHLERQHAGEETAAVRETTGGINVV-DNGVTRPLDMNALRALIVSACEGLGAAVNPD 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    +M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 245 -EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSS 961

Query: 930 ---DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
              D  +          CT         ECE CQ
Sbjct: 962 GALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 995


>gi|167586059|ref|ZP_02378447.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ubonensis Bu]
          Length = 990

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/989 (55%), Positives = 688/989 (69%), Gaps = 51/989 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R            A  + ++ D+G     +   L  ++  AC GL   V+   
Sbjct: 131 REKRHLERQHAGEEAPAVESAGGINVV-DNGVTRPLDLNALRALIVSACDGLGAAVNPDP 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 190 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    EM   Y EYF ++++ GV A LL + ++ FDL  L + L   RD  F YLGLQ 
Sbjct: 244 EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGDALDANRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++GSRIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHVDGSRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 364 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 484 TANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 544 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 603

Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 604 NLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVPKARNSNLKHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 664 VGMGIMGFQDCLHLLRTPYASQAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 723

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +  L W EL+ R+   GMRNSNC+AIAPTATI+N
Sbjct: 724 WDRGILPQDTLKLLTEARGGYVEVDTSESLDWSELRSRIAAHGMRNSNCVAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 784 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 844 DRVPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-----------------------VTDP 931
            GLKTTYYLR+ +AT VEKST+    G LNAVP                           
Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGAGGAQGAAGGFGATGGDASAAGT 961

Query: 932 NSSTHSLGIPSSCTSDT------ECEVCQ 954
            ++         C          ECE CQ
Sbjct: 962 VNAAPVEAEGPVCMMRPGDPGFDECEACQ 990


>gi|330880141|gb|EGH14290.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330966560|gb|EGH66820.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 970

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/969 (57%), Positives = 695/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S         A   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQAQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  TI  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|289628679|ref|ZP_06461633.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330866024|gb|EGH00733.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 970

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/969 (56%), Positives = 693/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S             L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|320323422|gb|EFW79510.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327619|gb|EFW83631.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330876274|gb|EGH10423.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 970

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/969 (56%), Positives = 694/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S             L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|213969510|ref|ZP_03397646.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|301385966|ref|ZP_07234384.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058709|ref|ZP_07250250.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato K40]
 gi|302134400|ref|ZP_07260390.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925606|gb|EEB59165.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
          Length = 970

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/969 (57%), Positives = 695/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S         A   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQAQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAGRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGRAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  TI  AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|257485934|ref|ZP_05639975.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331010342|gb|EGH90398.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 970

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/969 (56%), Positives = 694/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S             L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRTPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|189349323|ref|YP_001944951.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           multivorans ATCC 17616]
 gi|189333345|dbj|BAG42415.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
           multivorans ATCC 17616]
          Length = 997

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/994 (55%), Positives = 691/994 (69%), Gaps = 56/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 19  RPLGGAEQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 72

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 73  GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 132

Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   + +       + ++ D+G     +   L  ++  AC GL   V+  
Sbjct: 133 REKRHLERQHAGEETAAVRETTGGINVV-DNGVTRPLDMNALRALIVSACDGLGAAVNPD 191

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 192 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 246

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    +M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 247 -EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQ 305

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 306 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLF 365

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 366 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 425

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 426 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 485

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+K
Sbjct: 486 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKK 545

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 546 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 605

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 606 CNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 665

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 666 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 725

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+
Sbjct: 726 LWDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATIS 785

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 786 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 845

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 846 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 905

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 906 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSS 963

Query: 930 ---DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
              D  +          CT         ECE CQ
Sbjct: 964 GALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 997


>gi|161525958|ref|YP_001580970.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           multivorans ATCC 17616]
 gi|221202416|ref|ZP_03575448.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2M]
 gi|221208124|ref|ZP_03581129.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|160343387|gb|ABX16473.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221172027|gb|EEE04469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|221177693|gb|EEE10108.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           multivorans CGD2M]
          Length = 995

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/994 (55%), Positives = 691/994 (69%), Gaps = 56/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAEQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   + +       + ++ D+G     +   L  ++  AC GL   V+  
Sbjct: 131 REKRHLERQHAGEETAAVRETTGGINVV-DNGVTRPLDMNALRALIVSACDGLGAAVNPD 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++    +M   Y EYF ++++ GV+A LL + ++ FDL  L   L   RD  F YLGLQ
Sbjct: 245 -EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSS 961

Query: 930 ---DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
              D  +          CT         ECE CQ
Sbjct: 962 GALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 995


>gi|110833572|ref|YP_692431.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax
           borkumensis SK2]
 gi|110646683|emb|CAL16159.1| ribonucleoside reductase [Alcanivorax borkumensis SK2]
          Length = 962

 Score =  992 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/957 (57%), Positives = 707/957 (73%), Gaps = 14/957 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+ D N  D+      A   P +   ++VIKRNG V  +D  KI+ AI KAF+AVEG  A
Sbjct: 15  PASDSNDQDQSI----ASTAPGQ---LRVIKRNGKVVGYDDDKITVAISKAFLAVEGGTA 67

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S R+ + +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YVLYR
Sbjct: 68  AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127

Query: 123 EERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           E+R+  RAA+  S        +  + + M+DG+    +  RLE ++  ACSGL+DV++  
Sbjct: 128 EQRASKRAAEQKSTDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADK 187

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+S  D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L    +  
Sbjct: 188 IITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEAL-QFLRVA 246

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++A+H EM  LY +    YI +G++  LL   + ++DL  L   L   RD  F YLGLQ 
Sbjct: 247 ERASHDEMNALYSDALKAYISKGIELELLSPQLAEYDLDALGAALDGNRDLQFSYLGLQT 306

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H N +RIE+PQ FFMRVAMGLA +E  +E RA+EFYNLLSSF +M STPTLFN
Sbjct: 307 LYDRYFIHHNDTRIELPQCFFMRVAMGLAAEEDNREARAIEFYNLLSSFDYMSSTPTLFN 366

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+
Sbjct: 367 AGTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGR 426

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 427 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 486

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           +ANWIPDLFMKRV     WTLFSP++  DLHDLYG+ FE AY  YE +   GE+K+F+++
Sbjct: 487 SANWIPDLFMKRVINEEDWTLFSPNDTPDLHDLYGEAFEKAYTEYEAKTRSGELKLFKRL 546

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVC
Sbjct: 547 PAINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVC 606

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL  H   N  + +KL STI TAVR+LDNVIDIN +++ +AK+SN  HR +GLG+
Sbjct: 607 NLGSVNLAQHVDENGLNIEKLQSTINTAVRMLDNVIDINYYSVPQAKRSNMKHRPVGLGI 666

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+   I YAS +AV  AD SME +S++AI AS +LA+ERGAY +F GSLW QG+
Sbjct: 667 MGFQDALYKQGISYASSDAVTFADTSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGI 726

Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDSI +L + R      ++R+  L WD ++   K  GMRNSN MAIAPTATIANI GV
Sbjct: 727 LPIDSIDILVKQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGV 785

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTVVN +LV  LK+R LWD  M++DLKY+DGS   IERIP
Sbjct: 786 SQSIEPTYQNLYVKSNLSGEFTVVNPYLVKALKERGLWDNVMVNDLKYYDGSAQPIERIP 845

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK+   TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD  Y+ AWL+GLK
Sbjct: 846 ADLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLK 905

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           TTYYLR+  AT  EKST+        +     P     +  +P +C+ D  +CE CQ
Sbjct: 906 TTYYLRAIGATQTEKSTISDGKLNQVSSGPETPAEFNQAADVPKACSIDEPDCEACQ 962


>gi|289648391|ref|ZP_06479734.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 970

 Score =  992 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/969 (56%), Positives = 693/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S             L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTIN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|330960619|gb|EGH60879.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 970

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/968 (56%), Positives = 697/968 (72%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++ ++      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAGRA-TEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L       + AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVAESAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + DFDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLADFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +A+ SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R    ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P                    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|302184854|ref|ZP_07261527.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae 642]
          Length = 970

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/968 (56%), Positives = 695/968 (71%), Gaps = 23/968 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMAELYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DS  +L E R    ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +L
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTY
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTS 946
           YLR+ +ATS EKST+    GKLNAV          ++  P                    
Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962

Query: 947 DTECEVCQ 954
           + +CE CQ
Sbjct: 963 EPDCEACQ 970


>gi|66046946|ref|YP_236787.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257653|gb|AAY38749.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 970

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/977 (56%), Positives = 698/977 (71%), Gaps = 33/977 (3%)

Query: 3   PSKDVNKGDEDAFPS-------LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFM 55
            +    +      P        L+   P +   ++VIKRNG V  +   KI+ AI KAF+
Sbjct: 2   QTDTTRENSPTGAPQPSQTQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFL 58

Query: 56  AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKIT 115
           AVEG  A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ 
Sbjct: 59  AVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVA 118

Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD 175
           R+YV+YR+ R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +
Sbjct: 119 RDYVIYRDSRAKERAVRTPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAE 177

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           V + ++ +ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  
Sbjct: 178 VDADLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG- 236

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
                  ATHHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F Y
Sbjct: 237 FLGVADSATHHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTY 296

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M ST
Sbjct: 297 LGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSST 356

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I 
Sbjct: 357 PTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIK 416

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRR
Sbjct: 417 GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRR 476

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEI 534
           THDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE+YE      G+I
Sbjct: 477 THDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEHYEALTEYPGKI 536

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ 
Sbjct: 537 KLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNK 596

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +E AVCNLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR
Sbjct: 597 DEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHR 656

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GS
Sbjct: 657 PVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGS 716

Query: 715 LWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           LW +G+ P+DS  +L E R    ++++    L W  ++ RV+  G+RNSN MAIAPTATI
Sbjct: 717 LWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATI 775

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           ANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+ 
Sbjct: 776 ANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQ 835

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR A
Sbjct: 836 QIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMA 895

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------- 942
           W  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P           
Sbjct: 896 WYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPA 953

Query: 943 -----SCTSDTECEVCQ 954
                    + +CE CQ
Sbjct: 954 PVPKACAIDEPDCEACQ 970


>gi|186477387|ref|YP_001858857.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           phymatum STM815]
 gi|184193846|gb|ACC71811.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           phymatum STM815]
          Length = 997

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/999 (55%), Positives = 702/999 (70%), Gaps = 65/999 (6%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P + + +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 18  RPVEGLAQGADALAPQTGY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 71

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM++G H + R YVLY
Sbjct: 72  GAASARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRTGEHNVARAYVLY 131

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R+  R      + DAP+A  L +  D+G     +   L  ++E AC+ L D V+++ 
Sbjct: 132 REKRTQER----GHEVDAPVASGLNVT-DNGVTRPLDMAALRGLIESACANLGDAVNAEP 186

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VT+R LL  +RRE+L       
Sbjct: 187 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREIL------E 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ T  EM   Y EYF  +I+ GV A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 241 EEVTQAEMAGRYAEYFPLFIKRGVNAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQT 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHI+G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 301 LYDRYFLHIDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 361 SGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 421 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 481 TANWIPDLFMKRVLEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 541 PAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 600

Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 601 NLGSVNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRP 660

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LH+L  PYAS EAVE AD SME + ++A  AS ELA+ERG YS+++GSL
Sbjct: 661 VGMGIMGFQDCLHVLRTPYASQEAVEFADRSMEAVCYYAYWASTELAEERGRYSTYRGSL 720

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LLA+ R   + ++ +  + W  L+ R+ T GMRNSNC+AIAPTATI+N
Sbjct: 721 WDRGILPQDTLKLLADARGGYVEVDSSESMDWASLRSRIATHGMRNSNCVAIAPTATISN 780

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I
Sbjct: 781 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLSRI 840

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P DL+ I+ATAFE+D  WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 841 DRVPADLRAIYATAFEVDATWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 900

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD------------------------ 930
            GLKTTYYLR+ +AT VEKST+    G LNAVP  D                        
Sbjct: 901 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSGDGGAGSFGVGGGAASSGTKGGFQAS 958

Query: 931 ---------PNSSTHSLGIPSSCTSDT------ECEVCQ 954
                    P            C          ECE CQ
Sbjct: 959 AASAAATSVPAVEAAPEADGPVCMMRPGDPGFEECEACQ 997


>gi|194290771|ref|YP_002006678.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224606|emb|CAQ70617.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 979

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 562/978 (57%), Positives = 700/978 (71%), Gaps = 35/978 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGV---QVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +     G     P+               ++I+RNG V +F+PSKI+ A+ KAF+AV G 
Sbjct: 10  TGGAAAGVASQAPTTQQTPSAATSNYPDHKIIRRNGAVVAFEPSKIAVAMTKAFLAVNGG 69

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++I++ LT+  V  L++   S   +HIED+QDQVE SLM+SG H++ R YVL
Sbjct: 70  QGAASARVREIVEQLTDNVVRALVRSRPSGGAIHIEDVQDQVELSLMRSGEHEVARAYVL 129

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDD-GTLISFNSKRLEMIVEEACSGLQD-VSS 178
           YRE+R   RA+ S           + I + D G     +   L  +++ ACSGL D VS+
Sbjct: 130 YREKRKAERASASAQAVARVQEAGISINVTDAGVTKPLDIVALHALIDNACSGLGDAVSA 189

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + +L ET KN+Y+G+  + +  + I ++RTLIEK+P+Y++VTAR LL  +R+E+L T   
Sbjct: 190 EPILKETLKNLYEGVPMTQVYDSAILAARTLIEKDPDYSQVTARILLHTIRKEILGT--- 246

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              + T  EM   Y EYF ++I  G+ A LL E +  FDL  L   L   RDF F YLGL
Sbjct: 247 ---EVTQAEMATRYAEYFPKFIARGIAAELLDEKLATFDLARLGAALDAGRDFQFNYLGL 303

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTL
Sbjct: 304 QTLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDREARAIEFYQLLSSFDFMSSTPTL 363

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT+  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364 FNSGTQRSQLSSCYLTTVSDDLEGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTN 423

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV +NA WTLFSP    DLHD  GK FE AY  YE +A  GE+K+F+
Sbjct: 484 MNTANWIPDLFMKRVMENAEWTLFSPSTCPDLHDKVGKAFEKAYLGYEAKAANGELKLFK 543

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           K+ A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E A
Sbjct: 544 KVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 603

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH A         D+ KL  TIRTA+R+LDNVIDIN + +EKA+ SN  H
Sbjct: 604 VCNLGSVNLVAHLAKQADGSYALDHAKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRH 663

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LH+L  PY+S  AV+ AD SME + ++A  AS ELA+ERG Y ++ G
Sbjct: 664 RPVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYQASTELAEERGRYETYTG 723

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P DS+ LLAE R   L ++ +S + W  L+ R+K  GMRNSNC+AIAPTATI
Sbjct: 724 SLWDRGILPQDSLKLLAEERGGYLDVDMSSSMDWTSLRARIKQHGMRNSNCIAIAPTATI 783

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DGS+ 
Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLS 843

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ A
Sbjct: 844 RIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLA 903

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS----------THSLGIPS 942
           WL GLKTTYYLR+ +AT VEKST+    G LNAV     + S                 +
Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTVSR--GSLNAVSSGSDSGSALDAAAASAPAMPEAEGA 961

Query: 943 SCTSDT------ECEVCQ 954
            CT         ECE CQ
Sbjct: 962 VCTMRPGDPGFEECEACQ 979


>gi|71734708|ref|YP_275880.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555261|gb|AAZ34472.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 970

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/969 (56%), Positives = 693/969 (71%), Gaps = 26/969 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S             L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC  L +V + ++ +
Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACESLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G++K+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    + ++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 962 DEPDCEACQ 970


>gi|299134881|ref|ZP_07028073.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
           1NLS2]
 gi|298590691|gb|EFI50894.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp.
           1NLS2]
          Length = 967

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 609/953 (63%), Positives = 737/953 (77%), Gaps = 16/953 (1%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           +   PS + P       +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG  A+ S RV + 
Sbjct: 21  DSLAPSPSEPA------MQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEA 74

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           ++ LT++ V  L +        HIED+QDQVE +LM+S HHK+ R YVLYREER+  RAA
Sbjct: 75  VEQLTQEVVGTLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAA 134

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
              S + +   P L++ + +G  +  + KR E+I+ EAC GL  V    VL+E  +N+YD
Sbjct: 135 DRASTTVSSNEPTLQMTLANGARVPLDLKRFELIIREACEGLDAVDPAPVLAEARRNLYD 194

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+S+ +L  A I ++RTL+E+EPNYA V+AR LL+KLR EVL+ V+  P  A+  +M   
Sbjct: 195 GISQDELALASIMAARTLVEQEPNYAYVSARLLLDKLRSEVLSFVHGTPTSASQSDMATR 254

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           Y EYF  YI+ G++A LL   +   DL  LA+ LK ERD  F++LGLQ LYDRYFLH++G
Sbjct: 255 YAEYFPAYIKTGIEAELLDPELGRHDLARLASALKPERDMLFQFLGLQTLYDRYFLHVHG 314

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +RIE+PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT  PQLSSC
Sbjct: 315 ARIELPQAFFMRVAMGLAMREIDREGRAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSC 374

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FLTTV DDL GIF A+++NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLKVA
Sbjct: 375 FLTTVADDLDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVA 434

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+
Sbjct: 435 NDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQ 494

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV Q+  WTLFSPDE  +LHDLYG  F+ AYE YE +A RGE++VF+++ A  LWR+MLT
Sbjct: 495 RVEQDGEWTLFSPDETPELHDLYGPRFKAAYEAYEAKAARGEMRVFKQVRATDLWRRMLT 554

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGSINLL H 
Sbjct: 555 MLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHT 614

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D +KL  TI TAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGFQ ALH+  
Sbjct: 615 TREGLDQNKLKRTITTAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHVQR 674

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IP AS  AV  AD SME IS+HAISAS +LA ERG Y SF GSLW QG+ PIDS+ +L++
Sbjct: 675 IPIASEAAVAFADASMEIISYHAISASADLAVERGRYPSFDGSLWSQGILPIDSVAVLSK 734

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            RD  A+N +  L W  L++RV+  GMRNSN MAIAPTATI+NICGV+QSI+PSYQNL+V
Sbjct: 735 SRDGTALNASMTLDWTGLRERVRKDGMRNSNVMAIAPTATISNICGVAQSIEPSYQNLFV 794

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSNMSGDFTVVN  LV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE+
Sbjct: 795 KSNMSGDFTVVNEHLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEV 854

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D  WLIESA+RRQKWIDQAQSLNLY+  PSGKKLD +YR AW +GLKTTYYLRSRSAT V
Sbjct: 855 DTSWLIESAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHV 914

Query: 912 EKSTLKGVDGKLNAVPVTD---------PNSSTHSLGIPSSCTSD-TECEVCQ 954
           EKSTLKG DGKLNAV  +          PN++   L    +C+ D  +CE CQ
Sbjct: 915 EKSTLKGTDGKLNAVSASGMLAHAPIIVPNATAPDLDGVKACSIDNPDCEACQ 967


>gi|329893651|ref|ZP_08269785.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC3088]
 gi|328923578|gb|EGG30890.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC3088]
          Length = 922

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/926 (60%), Positives = 694/926 (74%), Gaps = 8/926 (0%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKRNG V  FD SKIS AI KAF+AVEG  A+ S R+ + +  LT Q +    +   S  
Sbjct: 2   IKRNGQVVPFDNSKISVAITKAFLAVEGGTAAASSRIHETVAKLTTQVMGTFERRMPSGG 61

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMMD 150
            +HIEDIQDQVE +LM++G HKI R+YV+YREE++  RA +    ++A   A  + ++  
Sbjct: 62  TIHIEDIQDQVELALMRAGEHKIARDYVIYREEQARKRAQKRALSAEAERAAGAISVLQP 121

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           DG+    + +RL+ +V EAC+ L DVS+  +L E  +N+YDG++  ++ T+L+ ++RTLI
Sbjct: 122 DGSRAPLDIERLQTVVSEACADLADVSASKILEEALRNLYDGVTLDEVTTSLVITARTLI 181

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E+EPNY    AR L + LR E L       Q+AT  EM   YP+    YI +G++  LL 
Sbjct: 182 EQEPNYTYAAARLLCDDLRSEAL-EFLGVTQRATQQEMALYYPQALQAYIAKGIQLELLS 240

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
             + DFD+  L   ++ ERD  F YLGLQ LYDRYF+H N +R E+PQ FFMR+AMGLA+
Sbjct: 241 PELADFDIARLGAAIQPERDLQFTYLGLQTLYDRYFIHSNETRFELPQVFFMRIAMGLAV 300

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +E +K  RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+GA+++N
Sbjct: 301 REDDKNARAIEFYQLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIRDN 360

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCA
Sbjct: 361 ALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 420

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH+D+EEFL+LRKNTGDDRRRTHDMN+ANWIPDLFMKRV +   WTLFSP++  DL
Sbjct: 421 YLETWHLDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVFEGGEWTLFSPNDTPDL 480

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           HD YG +FE  YE YE Q   GE+K+F+++ A  LWRKML MLFETGHPWITFKDPCN+R
Sbjct: 481 HDSYGADFEAKYEAYEAQTRSGELKLFKRVKAENLWRKMLGMLFETGHPWITFKDPCNLR 540

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQ HVGVVHSSNLCTEITLN+S EE AVCNLGS+NL  H   N  + +KL  T+ TAVR
Sbjct: 541 SPQSHVGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLPQHIDENGLNLEKLQKTVTTAVR 600

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVIDIN +++ +A++SN  HR +GLGLMGFQ AL+  HI Y+SPEAVE AD SME I
Sbjct: 601 MLDNVIDINYYSVPQAERSNFRHRPVGLGLMGFQDALYKQHIAYSSPEAVEFADRSMEAI 660

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDE 748
           S++AI AS  LA+ERG YSSF+GSLW QG+ PIDS+  LAE R    L ++RT  L WD 
Sbjct: 661 SYYAIQASSALAEERGTYSSFEGSLWSQGILPIDSLERLAESRGDQYLQIDRTQTLDWDT 720

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++RV+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +LVN
Sbjct: 721 LRERVRAKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 780

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +LK R+LWD+ M++DLKY+DGS   I+RIP DLK I++TAFE++P W++E+ASRRQKWID
Sbjct: 781 DLKARNLWDKVMVNDLKYYDGSAQAIDRIPADLKAIYSTAFEVEPRWIVEAASRRQKWID 840

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QAQSLNLY++  SGKKLD  YR AWL GLKTTYYLRS +AT  EKST+    G LNAV  
Sbjct: 841 QAQSLNLYINNASGKKLDVTYRMAWLSGLKTTYYLRSLAATGTEKSTVD--KGTLNAVAA 898

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                             D +CE CQ
Sbjct: 899 AAAPQPAPVPKA--CSLDDPDCEACQ 922


>gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate reductase subunit alpha
           [Janthinobacterium sp. Marseille]
 gi|151279943|gb|ABR88353.1| ribonucleoside-diphosphate reductase alpha chain [Janthinobacterium
           sp. Marseille]
          Length = 963

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/960 (57%), Positives = 691/960 (71%), Gaps = 16/960 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++  N       PS +      +   ++I+RNG V  F+PSKIS A+ KAF+AV G   
Sbjct: 12  PTEIGNIASLAVAPSTSNTQTVGLGEHRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQG 71

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+SG H + R YVLYR
Sbjct: 72  AASARVRELVEQLTSNVVNALVRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 131

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
            +R + RA Q  +K  A    +L +  +DG     +  ++  ++  AC GL+  V ++ +
Sbjct: 132 AKRMEERAQQQAAKPVAETH-QLHVT-EDGQRRPLDMNQVRDLINAACIGLEKHVDAEAI 189

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+YDG+   +L  + I ++R L+EK+P Y+ VTAR L+  +R+EV         
Sbjct: 190 LHETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKEVFG------L 243

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +    +    Y EYF ++I++G++A LL   +  FDL  L + L  ERD  F YLGLQ L
Sbjct: 244 EVAQADAPAQYLEYFPKFIKKGIEAELLDAKLGQFDLKKLGDALVPERDLQFGYLGLQTL 303

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI  +RIEMPQAF+MRVAMGLAL E  +E+RA+EFYNLLSSF FM STPTLFNS
Sbjct: 304 YDRYFLHIRDTRIEMPQAFYMRVAMGLALNEINREERAIEFYNLLSSFDFMSSTPTLFNS 363

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT+  QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+S
Sbjct: 364 GTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRS 423

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT
Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNT 483

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP +  DLHD  GK FE AY  YE +A RGE+K+F+KI 
Sbjct: 484 ANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEAAYTGYEAKAARGELKLFKKIQ 543

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 544 ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 603

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+N+ AH  + Q D+ KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR +GLG+M
Sbjct: 604 LGSVNMPAHMKDGQLDHVKLQKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIM 663

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ  LH++ IPYAS EAV+ AD SME + ++A  AS ELA+ERG YSS++GSLWD+G+ 
Sbjct: 664 GFQDCLHMMRIPYASDEAVQFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGIL 723

Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           P DS+ LL E R   L  + T  L W  L++R+K  GMRNSNC+AIAPTATI+NI GVS 
Sbjct: 724 PQDSLKLLQEERGGYLEADLTETLDWTPLRERIKQFGMRNSNCVAIAPTATISNIIGVSA 783

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P+YQNLYVKSN+SG+FT +N +LV +LK R LWDE MISDLKY DGS+  I+RIP D
Sbjct: 784 CIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQD 843

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           L+ I++TAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTT
Sbjct: 844 LRDIYSTAFEVEPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 903

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
           YYLR+  AT  EKST K               +   +     +C          ECE CQ
Sbjct: 904 YYLRTMGATHTEKSTSKTGALNAVDSGAPSSAAQAAAETDGPACMLRPGDAGFEECEACQ 963


>gi|330980157|gb|EGH78343.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 971

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/969 (56%), Positives = 694/969 (71%), Gaps = 24/969 (2%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           HHEM  LY +    Y+    +K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 246 HHEMADLYAKALPAYVTPAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 305

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 306 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 365

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 485

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A
Sbjct: 486 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 545

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 546 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 605

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 606 GSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 665

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P
Sbjct: 666 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 725

Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +DS  +L E R    ++++    L W  ++ RV+  G+RNSN MAIAPTATIANI GVSQ
Sbjct: 726 LDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 784

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+  IERIP +
Sbjct: 785 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 844

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTT
Sbjct: 845 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 904

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945
           YYLR+ +ATS EKST+    GKLNAV          ++  P                   
Sbjct: 905 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 962

Query: 946 SDTECEVCQ 954
            + +CE CQ
Sbjct: 963 DEPDCEACQ 971


>gi|83719828|ref|YP_441700.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis E264]
 gi|257137869|ref|ZP_05586131.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis E264]
 gi|83653653|gb|ABC37716.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           thailandensis E264]
          Length = 995

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/994 (55%), Positives = 702/994 (70%), Gaps = 56/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALASQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  ++P    + +  D+G + + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+++K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN--------------------- 932
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGATGGD 961

Query: 933 ------SSTHSLGIPSSCTSDT------ECEVCQ 954
                 ++         CT         ECE CQ
Sbjct: 962 APSGAMNAAPIEADGPVCTMRPGDPGFEECEACQ 995


>gi|82703583|ref|YP_413149.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosospira
           multiformis ATCC 25196]
 gi|82411648|gb|ABB75757.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
           25196]
          Length = 956

 Score =  987 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/960 (56%), Positives = 701/960 (73%), Gaps = 20/960 (2%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P   +   +  + PS   P   +    ++I+RNG V  F+P+KIS A+ KAF+AVEG   
Sbjct: 9   PRPAMAGYEFSSNPSGHDP---RYSQYKIIRRNGSVAGFEPNKISIAMTKAFLAVEGSQG 65

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV++++  LTE  V  L++   S    HIEDIQDQVE +LM+SG H + R YVLYR
Sbjct: 66  AASARVREVVARLTEDVVNALMRRQPSGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 125

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIV 181
           E+R+  RA Q  + +       L ++ +DG  +  ++ RL  ++   C GL + V   ++
Sbjct: 126 EDRARKRAQQKEAGAAEAAGSVLNVL-EDGRRVPLDTARLLALIGSCCEGLGEGVDPALI 184

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L  T K++YDG+   ++  ++I S+R L+EKEP Y+ VTAR LL  LR EVL       +
Sbjct: 185 LKATLKDLYDGVPMEEVRKSVILSARALLEKEPAYSYVTARLLLHSLRFEVLG------E 238

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +    EM   Y EYF  +I+ G++A LL E +  FDL  LA  L  ERD  F YLGLQ L
Sbjct: 239 EIVQREMAGRYMEYFPAFIKRGIEAELLDERLAQFDLPRLAQALHAERDLKFGYLGLQTL 298

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI   RIE+PQAFFMRVAMGLAL E ++E RA+EFY++LS+F FM STPTLFNS
Sbjct: 299 YDRYFLHIQERRIELPQAFFMRVAMGLALNEIDREARAIEFYHVLSNFDFMSSTPTLFNS 358

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GTR  QLSSC+LTTVPDDL GI+  ++ENA+LAKY+GGLGNDWT VR +G+HI GTNGKS
Sbjct: 359 GTRRSQLSSCYLTTVPDDLDGIYEGIKENALLAKYAGGLGNDWTRVRAMGSHIKGTNGKS 418

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV +DTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 419 QGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNT 478

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A W+PDLFMKRV +   WTLFSP +V DLH+ YGK FE AY  YE +  RGE+ +++ I 
Sbjct: 479 ATWVPDLFMKRVMEGGEWTLFSPSDVPDLHEKYGKAFEQAYLAYEDKVARGELDLYKTIP 538

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           AV LWRKML+MLFETGHPWITFKD CNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCN
Sbjct: 539 AVQLWRKMLSMLFETGHPWITFKDACNIRSPQNHIGVVHSSNLCTEITLNTNDQEIAVCN 598

Query: 602 LGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           LGSINL AH  +    D DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG+
Sbjct: 599 LGSINLAAHIDDGGKLDADKLKRTVSLAMRMLDNVIDINFYAVAKARNSNLRHRPVGLGI 658

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ  LH + IPYAS EAVE AD +ME +++HA  AS ELA+ERG Y+S++GSLWD+G+
Sbjct: 659 MGFQDCLHRMRIPYASDEAVEFADRTMEAMAYHAYWASTELAEERGRYASYRGSLWDRGI 718

Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            P D++ LL E R   +  +R+S L W+ L++R++  GMRNSNC+AIAPTATI+NI GVS
Sbjct: 719 LPQDTLDLLQEERGGYIEADRSSTLDWEALRERIRNHGMRNSNCLAIAPTATISNIVGVS 778

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI+P+++NLYVKSN+SG+FT+ N +LV++LK+  LWDE MISD+KY DG++G I+R+P 
Sbjct: 779 ASIEPTFKNLYVKSNLSGEFTIANQYLVSDLKKLGLWDEVMISDIKYFDGALGKIDRVPT 838

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +L+K++ATAFE++P WLIE+A+RRQKWIDQ+QSLN+Y+   SGKKLD  Y+ AW+ GLKT
Sbjct: 839 ELRKLYATAFEVEPQWLIEAAARRQKWIDQSQSLNIYIASVSGKKLDETYKLAWVRGLKT 898

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS-----SCTSDTECEVCQ 954
           TYYLRS  ATS EKST++   G LNAVP      +  +  +P+         D ECE CQ
Sbjct: 899 TYYLRSLGATSAEKSTVQA--GSLNAVPAEGSLPAMGAAAVPATDVSFCSVDDPECESCQ 956


>gi|239813963|ref|YP_002942873.1| ribonucleotide-diphosphate reductase subunit alpha [Variovorax
           paradoxus S110]
 gi|239800540|gb|ACS17607.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus S110]
          Length = 971

 Score =  987 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 538/972 (55%), Positives = 701/972 (72%), Gaps = 35/972 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           PS    +  +    +   P  + +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   
Sbjct: 15  PSTPTQQQRD----TAGSPAGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQG 70

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++ +  LT+  +  +++        HIED+QDQVE  LM+ GHH+I R YVLYR
Sbjct: 71  AASASVRETVDALTQGVIRAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYR 130

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E R+  R+     + +AP  P L ++ D+G  ++ +  +L+ ++E AC  L D +++  +
Sbjct: 131 ERRTQERS--KQVEQEAPATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + +E++       +
Sbjct: 188 VAETMRNLYDGVPLDEVYKASILAARTLIEKDPDYTFATARLLLHTIFKEIIG------R 241

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +    E    Y +YF ++I++GV+  LL E ++ +DL  L   LK ERD  F+YLGLQ L
Sbjct: 242 EVMPAERATAYADYFPQFIKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH+  SRIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+
Sbjct: 302 YDRYFLHVRKSRIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNA 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+S
Sbjct: 362 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGES 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  R I 
Sbjct: 482 ANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQ 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCN
Sbjct: 542 ASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCN 601

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NLL H  + + D +KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLM
Sbjct: 602 LGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLM 661

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ L IPYAS EAV+ ADESME I +HA  AS ELA+ERG YSS+KGSLWD+G+ 
Sbjct: 662 GFQDALYELRIPYASQEAVQFADESMEAICYHAYWASTELARERGKYSSYKGSLWDKGIL 721

Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID++ LL + R   + ++R++ L W+ L++++K  GMRNSNC+AIAPTATI+NI GV  
Sbjct: 722 PIDTLDLLEKARGGYVEVDRSATLDWEALRQKIKADGMRNSNCVAIAPTATISNIIGVDA 781

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D
Sbjct: 782 SIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQD 841

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K ++ATAFE++  WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTT
Sbjct: 842 VKALYATAFEVETTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 901

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST------------------HSLGIPS 942
           YYLR++SAT  EKST++   G+LNAV      SS                    +  I  
Sbjct: 902 YYLRTQSATHAEKSTVQ--SGRLNAVSSGSDASSGMSALEAAAAAAKAQMSAMPATDIAF 959

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 960 CGVDDPTCEACQ 971


>gi|124268398|ref|YP_001022402.1| ribonucleotide-diphosphate reductase subunit alpha [Methylibium
           petroleiphilum PM1]
 gi|124261173|gb|ABM96167.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
           PM1]
          Length = 971

 Score =  987 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/959 (56%), Positives = 698/959 (72%), Gaps = 32/959 (3%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S A P      G Q+I+RNG V +F+P+KI+ A+MKAF+AV G   + S  V++++  LT
Sbjct: 24  SRAAPGSSAYAGYQIIRRNGAVVAFEPNKIAVALMKAFLAVHGTQGAASASVREMVDGLT 83

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  V  LL+        HIED+QD VE  LM+ GHH+I R YVLYRE R+  RA Q  + 
Sbjct: 84  ESVVRALLRSRPGGGTFHIEDVQDAVELGLMRGGHHEIARAYVLYRERRAQERAKQGAAP 143

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSE 195
               +A  L ++   G  +  ++ RL+ +VE AC+ L  +V +  +L+ET +N+YDG+  
Sbjct: 144 VTPAVA--LHVIDR-GQRVPLDTGRLQALVESACANLGSEVQAAPILAETQRNLYDGVPI 200

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            ++  A I ++RTLIEK+P Y + TAR LL  +RRE+L        +  H EMQ  Y +Y
Sbjct: 201 DEVYKAAILAARTLIEKDPAYTRATARLLLHTIRREILG------GEVLHEEMQQRYADY 254

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  +I++GV+A LL E +M +DL  L   LK +RD  F+YLGLQ LYDRYFLH+  +RIE
Sbjct: 255 FPGFIKQGVEAELLDERLMQYDLRRLGEALKADRDLQFDYLGLQTLYDRYFLHVRKARIE 314

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSGTR  QLSSC+LTT
Sbjct: 315 LPQAFFMRVAMGLALNEVDREARAIEFYEVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTT 374

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL GI+ A++ENA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTA
Sbjct: 375 VADDLDGIYEAIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTA 434

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +
Sbjct: 435 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVIE 494

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              WTLFSP    DLHD +G  FE AY  YE++ADRGE+K+++++ A  LWRKML+MLFE
Sbjct: 495 GGDWTLFSPSTCPDLHDKFGIAFEQAYTAYEQKADRGELKLYKRVPAKDLWRKMLSMLFE 554

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL  H  +  
Sbjct: 555 TGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNGSEIAVCNLGSVNLAQHLMHGA 614

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              + D+ KL  T+ TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ +L+ L 
Sbjct: 615 EGLEIDHAKLRKTVSTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDSLYQLR 674

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I YAS +AVE AD SME + +HA  AS ELA+ERG YSS+KGSLWD+G+ PIDS+ LLAE
Sbjct: 675 IAYASQQAVEYADRSMEAVCYHAYWASTELAEERGRYSSYKGSLWDRGILPIDSLDLLAE 734

Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++R++ L WD L+ R++  GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL 
Sbjct: 735 QRGGYVDVDRSTSLDWDALRARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNLS 794

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P++LK ++ATAFE
Sbjct: 795 VKSNLSGEFTVINEYLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAFE 854

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTYYLR+  AT 
Sbjct: 855 VEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTVGATH 914

Query: 911 VEKSTLKGVDGKLNAVPVTD---------------PNSSTHSLGIPSSCTSDTECEVCQ 954
            EKST+K   G LNAV                     SS  +  +      D  CE CQ
Sbjct: 915 AEKSTVKA--GHLNAVSSGSGGVDAVAAAAQAQFDAASSVPATDMKFCAIDDPTCEACQ 971


>gi|171463020|ref|YP_001797133.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192558|gb|ACB43519.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 990

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/958 (57%), Positives = 694/958 (72%), Gaps = 33/958 (3%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
               ++   ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V
Sbjct: 42  TQATQLSDYKIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVV 101

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             LL+   +    HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAAQ     +  
Sbjct: 102 RALLRSRPNGGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVSQEVQ 161

Query: 141 IAPK-----LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLS 194
            A +     +K+  D+G     +   L  ++E AC GL   + +  +++ET KN+YDG+ 
Sbjct: 162 TANQAGESGIKVT-DNGVEKWLDMAALRTVMEAACEGLGTHIDASPIVTETIKNLYDGVP 220

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            + +  + I +SRTLIEK+P Y++VTAR L+  + +E+L       ++    +MQ  Y  
Sbjct: 221 MAQVYDSAILASRTLIEKDPAYSQVTARILMHVIHKEILG------KEVLQGDMQAEYST 274

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF +YI EG+ A LL   M +FDL  LA  L   RD  F YLGLQ LYDRYFLHI   RI
Sbjct: 275 YFAKYINEGISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRI 334

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           EMPQAFFMRVAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T  PQLSSC+LT
Sbjct: 335 EMPQAFFMRVAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLT 394

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDT
Sbjct: 395 TVEDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDT 454

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+T+NWIPDLFMKRV 
Sbjct: 455 AVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMSTSNWIPDLFMKRVM 514

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +N  WTLFSP    DLH  +GK FE AY  YE++ADRGE+K FR+I A  LWRKML MLF
Sbjct: 515 ENGEWTLFSPSNTPDLHGKFGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLF 574

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612
           ETGHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL AH    
Sbjct: 575 ETGHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNTNEDEIAVCNLGSVNLTAHMTTD 634

Query: 613 ---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  D++KL  T+RTA+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH+
Sbjct: 635 ANGKMILDHEKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHM 694

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             IPYAS EAV+ AD SME + ++A  AS ELA+ERG YS++KGSLWD+G+ P DS+ LL
Sbjct: 695 QRIPYASDEAVKFADSSMEAVCYYAYQASNELAEERGVYSTYKGSLWDRGILPQDSVALL 754

Query: 730 AEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           A  R   L ++ +S + W+ L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QN
Sbjct: 755 AAERGGYLEVDSSSTMDWNGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQN 814

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+VKSN+SG+FTVVN +LV +LK R LWDE MI+DLKY DG++  I+RIP DL+ ++ATA
Sbjct: 815 LFVKSNLSGEFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATA 874

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +A
Sbjct: 875 FEVDPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAA 934

Query: 909 TSVEKSTLKGVDGKLNAVPVT------DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
           T VEKST+    G+LNAV         D  ++         CT         ECE CQ
Sbjct: 935 THVEKSTV--ASGQLNAVSSGGGVNGTDAAAAGGVEADGPVCTMRPGDAGFEECEACQ 990


>gi|256822963|ref|YP_003146926.1| ribonucleoside-diphosphate reductase subunit alpha [Kangiella
           koreensis DSM 16069]
 gi|256796502|gb|ACV27158.1| ribonucleoside-diphosphate reductase, alpha subunit [Kangiella
           koreensis DSM 16069]
          Length = 957

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 567/956 (59%), Positives = 720/956 (75%), Gaps = 12/956 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
            S      +  + P +    P     ++VI+RNG VT +D SKI  A+ KAF+AVEG  A
Sbjct: 10  QSAAKTPTNTPSRPEIEATKPG---EIRVIRRNGKVTPYDDSKIEVAMTKAFLAVEGGAA 66

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV + ++ LT+Q      +      I+HIED+QDQVE +LM++G  K+ R YVLYR
Sbjct: 67  AASSRVHETVRQLTKQITDAFKRRMPGGGIIHIEDVQDQVELALMRNGEQKVARSYVLYR 126

Query: 123 EERSDVRAAQSHSKSDAPI-APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           EERS  RAA+  +K DA +   ++ + ++DG+    + +RL  +V EAC  L DV    +
Sbjct: 127 EERSRERAARDTAKLDALVGDNQVMVTVEDGSKRPLDVERLHTVVVEACKDLSDVEPDQI 186

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L +T +N+YDG++  D   AL+ ++RT+IEKEPNY  VTAR LL+ +R E L  +    +
Sbjct: 187 LKDTMRNLYDGVAIKDAYQALVMTARTMIEKEPNYTYVTARLLLDSIRSEALREL-GVAK 245

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +AT  EM  +YPE F  Y+  GV+  LL   ++ FDL  +AN +K ERD  F YLG+Q L
Sbjct: 246 RATQSEMNAIYPEAFKAYLSVGVENELLSPELLSFDLDKIANAIKPERDMLFTYLGIQTL 305

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           +DRYF+H +  RIE+PQ F+MRVAMGLA+ E ++E RA+EFY++LS+FH+M STPTLFNS
Sbjct: 306 FDRYFIHKDEVRIELPQVFWMRVAMGLAVNEDDREARAIEFYDVLSTFHYMSSTPTLFNS 365

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT  PQLSSC+LT VPDDL GI+GA+++NA+L+K++GGLGNDWTPVRGLGA+I GTNGKS
Sbjct: 366 GTLRPQLSSCYLTNVPDDLDGIYGAIKDNALLSKFAGGLGNDWTPVRGLGAYIKGTNGKS 425

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMN+
Sbjct: 426 QGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNS 485

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLF+KRV+ +  WTLFSP+EV DLHDLYGKEFE  YE YE  A  G+IK  + I 
Sbjct: 486 ANWVPDLFLKRVSSDGDWTLFSPNEVPDLHDLYGKEFEERYEYYEEMAKYGKIKTAKTIP 545

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVC 600
           A  LWRKML+MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+ + EE AVC
Sbjct: 546 ANVLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTKAGEEIAVC 605

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL  H  + + D ++L  T+ TAVR+LDNVIDIN + ++ A+KSN  HR +GLGL
Sbjct: 606 NLGSVNLPKHMKDGKLDTEQLEKTVSTAVRMLDNVIDINFYPVDTARKSNMRHRPVGLGL 665

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ AL+L +IPY S  AV+ AD +ME IS++AI AS +LA+ERG+Y SF GSLW QG+
Sbjct: 666 MGFQDALYLQNIPYTSEAAVDFADNAMEAISYYAIQASTDLAEERGSYESFAGSLWSQGI 725

Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDSI  L E R    + ++ +S + WD L++RVKTIGMRNSN MAIAPTATI+NI GV
Sbjct: 726 LPIDSIEKLIEERGAEFIEVDTSSTMDWDTLRERVKTIGMRNSNVMAIAPTATISNISGV 785

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           SQSI+P+YQNLYVKSN+SG+FTVVN ++V ELK R LWD  M++DLKY++GS+ +I+RIP
Sbjct: 786 SQSIEPTYQNLYVKSNLSGEFTVVNPYMVKELKARKLWDSVMVNDLKYYEGSLQHIDRIP 845

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            ++K++ ATAFE++P WL+E+ASRRQKWIDQAQSLNLY+ EPSGKKLD +YR AW  GLK
Sbjct: 846 SEIKELFATAFEVEPKWLVEAASRRQKWIDQAQSLNLYMSEPSGKKLDMVYRMAWFRGLK 905

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           TTYYLRS  ATS EKST+   DGKLNAV      ++  S    +    + +CE CQ
Sbjct: 906 TTYYLRSLGATSTEKSTI--SDGKLNAVSSGP--AAVGSAAPKACAIDEPDCEACQ 957


>gi|92112800|ref|YP_572728.1| ribonucleotide-diphosphate reductase subunit alpha
           [Chromohalobacter salexigens DSM 3043]
 gi|91795890|gb|ABE58029.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
           DSM 3043]
          Length = 976

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/980 (56%), Positives = 685/980 (69%), Gaps = 41/980 (4%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           D    P  A       + ++VIKR G V +FD SKIS AI KAF+A EG  A+ S R+++
Sbjct: 2   DTSISPGKASVDITAPQRLRVIKRGGEVAAFDGSKISVAITKAFIATEGDNAAASSRIRE 61

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +   T+  V   L+       +HIEDIQDQVE +LM++G  K+ R YVLYREE +  R 
Sbjct: 62  FVSEATQSIVDTFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARAR- 120

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
            Q      A   P L +   DGT+   +  R+E +V +AC GL +V  + ++  + KN+Y
Sbjct: 121 -QPQGADIAKPHPSLNVTQADGTVRPLDLGRVETLVADACEGLANVEPQKIVDASLKNLY 179

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG+    + TAL+ ++RTL+EKEPNY   TAR L + LRRE L +      +AT+ EM  
Sbjct: 180 DGVPIDGVATALMMTARTLVEKEPNYTYATARLLQDNLRREAL-SFLGIADEATYQEMAT 238

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           LY   F  YI++G++   L E + +FDL  L   L + RD  F YLGLQ LYDRYFLH +
Sbjct: 239 LYAPAFKAYIDKGIEFEQLDERLREFDLDRLGAALDHTRDNQFTYLGLQTLYDRYFLHHD 298

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             R E+PQ  FMRVAMGLAL E + E RA+EFY LLSSF +M STPTLFN+GT+  QLSS
Sbjct: 299 DVRYELPQVMFMRVAMGLALNEDDPEARAIEFYELLSSFDYMASTPTLFNAGTQRSQLSS 358

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTVPD L GI+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV
Sbjct: 359 CYLTTVPDQLDGIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKV 418

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM
Sbjct: 419 VNDTAVAVNQGGKRKGAVCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFM 478

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  +  WTLFSP    DLHDLYG  FE  Y  YE     G++K+F+++ A  LWRKML
Sbjct: 479 KRVFDDEEWTLFSPSTCPDLHDLYGAAFEKRYAEYEEMTRNGQLKLFKRVKAKDLWRKML 538

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           +MLFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S++E AVCNLGS+NL  H
Sbjct: 539 SMLFETGHPWITFKDPCNLRSPQNHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAQH 598

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             + Q D DKL  T++TAVR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L
Sbjct: 599 IVDGQLDGDKLKKTVKTAVRMLDNVIDINYYAVPQARNSNFKHRPVGLGLMGFQDALYQL 658

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            I YAS +AV  AD SME IS+HAI AS +LA ERG Y SF+GSLW +GV PIDSI  LA
Sbjct: 659 GIAYASDDAVTFADTSMELISYHAIEASSDLATERGRYQSFEGSLWSKGVLPIDSIAKLA 718

Query: 731 EVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E R    + ++ ++   W  L+ +V   GMRNSN MAIAPTATI+NICGV+QSI+P+YQN
Sbjct: 719 EERGADYIEVDTSTTQDWARLRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQN 778

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+VKSN+SG+FTVVN+++VN+LK R LWDE MI+DLKY+DGS+  I+RIPDDLK  +A+A
Sbjct: 779 LFVKSNLSGEFTVVNAYMVNDLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASA 838

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FE++P WL+E+A+RRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+  A
Sbjct: 839 FEVEPKWLVEAAARRQKWIDQAQSLNLYIAGVSGKKLDVTYRMAWFRGLKTTYYLRALGA 898

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPN---------------------------------SST 935
           TSVEKST+    GKLNAV  T  +                                  S 
Sbjct: 899 TSVEKSTVDR--GKLNAVGNTGGSASPQPAAAPSPSPSPAASDAGGEARGIDDFLTGKSG 956

Query: 936 HSLGIPSSCTSDT-ECEVCQ 954
                PS+   D   CE CQ
Sbjct: 957 SGSRAPSAGDIDELGCEACQ 976


>gi|254492424|ref|ZP_05105596.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Methylophaga thiooxidans DMS010]
 gi|224462316|gb|EEF78593.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Methylophaga thiooxydans DMS010]
          Length = 976

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/975 (56%), Positives = 702/975 (72%), Gaps = 33/975 (3%)

Query: 13  DAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
            + P+     P     G  VI+RNG VT FD  KI+ AI KAF+AVEG  A  S R+ D 
Sbjct: 2   ASEPAQTTHTPSSAESGYSVIRRNGKVTDFDSGKIAVAITKAFLAVEGDSAQNSRRIHDT 61

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +K LT Q    LL+       VHIEDIQDQVE +LM+ G +K+ R YV+YRE++S+ RA 
Sbjct: 62  VKKLTGQITDNLLRRLDDGGTVHIEDIQDQVELALMREGEYKVARSYVVYREKQSEKRAE 121

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           +            L + + DGT    +  RL  ++ EAC GL +V  + +L +T +N++D
Sbjct: 122 EEKKHPQPANETTLHVTLADGTRQPLDIDRLHNLITEACEGLAEVDREAILRDTQRNLFD 181

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+ ESD+E AL+  +RT IEK+P Y+ + AR L++ +RRE L+ V+K P++A  +EM  +
Sbjct: 182 GVKESDVEKALVMGARTFIEKDPAYSTLAARLLMDGIRREALSFVFKMPKQAAQNEMVDI 241

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           YP+YF  YI   ++  L+   +  FDL  L   LK E DF F YLGLQ LYDRYF+H +G
Sbjct: 242 YPDYFKSYIHTAIEKELVDSELGLFDLDRLGKALKPELDFDFTYLGLQTLYDRYFIHYDG 301

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +R E+PQAF+MRVAMGLA+ E  +E+RA+EFYNLLSSF FM STPTLFNSGT  PQLSSC
Sbjct: 302 TRFELPQAFYMRVAMGLAINELNREERAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSC 361

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNGKSQGV+PFLKVA
Sbjct: 362 YLTTVPDDLSGIYNAMRDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVA 421

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVCAYLETWHID+EEFLD+RKNTGDDRRRTHDMNTANWIPD+FMK
Sbjct: 422 NDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLDMRKNTGDDRRRTHDMNTANWIPDMFMK 481

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV +   WTLFSP+EV DLHDL G  FE AY  YE +A RGEI+ F+++ A  LWRKML 
Sbjct: 482 RVAEEGQWTLFSPEEVDDLHDLTGLAFEKAYTEYEEKAARGEIRNFKQLPATDLWRKMLG 541

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+N++ H 
Sbjct: 542 MLFETGHPWVTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNMVKHI 601

Query: 612 ANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N   D  KL  T+RTA+R+LDNVI+ N +++ +A+ SN  HR +GLG+MGFQ AL+ L
Sbjct: 602 DENGKLDTQKLQKTVRTAMRMLDNVIEYNYYSVPQARNSNLLHRPVGLGIMGFQDALYKL 661

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY+S E V+ ADESME +S++AI AS +LA ERG Y S++GSLW +G+ PIDSI LL 
Sbjct: 662 RLPYSSEETVKFADESMEAVSYYAIEASSDLAAERGKYQSYEGSLWSKGILPIDSIKLLQ 721

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           E R   L  + +  + WD L+ ++K  GMRNSN MAIAPTATI+NICGVSQSI+P+YQN+
Sbjct: 722 EARGEYLQQDDSQTMDWDALRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNI 781

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           +VKSN+SG+FTV+N ++V +LK RDLWDE MI+DLKY DGS+ +I+RIPD+LK ++ TAF
Sbjct: 782 FVKSNLSGEFTVINPYMVEDLKARDLWDEVMINDLKYFDGSLQSIDRIPDELKALYTTAF 841

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           E+D  WLIE+ASRRQKWIDQAQSLNLY+ EPSGKK+D +Y+ AW+ GLKTTYYLRS  AT
Sbjct: 842 EMDARWLIEAASRRQKWIDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGAT 901

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSL-----------------------------GI 940
             EK++           P      ++                                  
Sbjct: 902 GAEKTSSAPTPPPSAQKPTGPTPVASAPTASPVASSAAASAPLASAAADPEEFLGEGMEA 961

Query: 941 PSSCTS-DTECEVCQ 954
           P +C+  + +CE CQ
Sbjct: 962 PQACSILEPDCEACQ 976


>gi|91787005|ref|YP_547957.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas sp.
           JS666]
 gi|91696230|gb|ABE43059.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
          Length = 969

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/972 (55%), Positives = 699/972 (71%), Gaps = 34/972 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +     G+  +  S A   P  +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   +
Sbjct: 11  TSGGLAGNPVSNDSSAPTNP--LAHYQIIRRNGSVVPFEPNKIAVAMMKAFLAVHGTQGA 68

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S  V++ +  LT+  +  L++        HIED+QDQVE  LM+ GHH+I R YVLYRE
Sbjct: 69  ASASVRETVDGLTQAVIRALMRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRE 128

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVL 182
           +RS  RA Q    + AP AP L +  D G  ++ + + L+ ++E +C+ L  DV    ++
Sbjct: 129 KRSQERARQPQ--TPAPEAPMLHVT-DGGQRVALDVRNLQALIEASCANLGADVKPDPIV 185

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L+  +RREVL       ++
Sbjct: 186 AETMRNLYDGVPIDEVYKASILAARTLIEKDPDYTYATARLLMHTIRREVLG------EE 239

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
            +  EM   Y EYF ++I +GV+  LL E +  FDL  L   LK ERD  F+YLGLQ L+
Sbjct: 240 VSQEEMHSRYAEYFPKFIAKGVQNELLDEKLQQFDLARLGAALKPERDLKFDYLGLQTLF 299

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH+   RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+G
Sbjct: 300 DRYFLHVRKQRIELPQAFFMRVAMGLSLGEIDREARAIEFYEILSSFDFMSSTPTLFNAG 359

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSC+LTTV DDL GI+ A++ENA+L+K++GGLGNDWTPVR LGAHI GTNG+SQ
Sbjct: 360 TLRSQLSSCYLTTVADDLGGIYDAIKENALLSKFAGGLGNDWTPVRALGAHIKGTNGESQ 419

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 420 GVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 479

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFM+RV +   WTLFSP +  DLHD +GKEFE  Y  YE +A+RGEIK  RK+ A
Sbjct: 480 NWIPDLFMRRVMEKGTWTLFSPSDTPDLHDKFGKEFEKIYTAYEARAERGEIKPARKLQA 539

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             +WRKML+MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNL
Sbjct: 540 TDMWRKMLSMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNL 599

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL+ H  +   D+DKL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MG
Sbjct: 600 GSVNLVQHLKDGAIDHDKLKKTITTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGIMG 659

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ  L+ L +PYAS EAVE AD+SME + +HA  AS ELA+ERG Y+S+KGSLWD+G+ P
Sbjct: 660 FQDCLYELRVPYASQEAVEFADKSMEAVCYHAYWASTELAKERGKYASYKGSLWDKGILP 719

Query: 723 IDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           +D++ +LAE R   + ++R++ L WD L++++   GMRNSNC+AIAPTATI+NI GV   
Sbjct: 720 LDTLDMLAEERGGYVEVDRSATLDWDALRQKIAQDGMRNSNCVAIAPTATISNIIGVDAC 779

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  ++R+P ++
Sbjct: 780 IEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVVDLKHFDGSLRPVDRVPQEI 839

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K ++ATAFE++  W++E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTY
Sbjct: 840 KALYATAFEVETSWIVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTY 899

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIPS 942
           YLR+  AT  EKST+K   GK+N+V      S                   ++ +  I  
Sbjct: 900 YLRTMGATHAEKSTVKA--GKMNSVSSGPEASGSGKSALEVAAAAAQAQMNASPATDIKF 957

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 958 CAIDDPGCEACQ 969


>gi|167895963|ref|ZP_02483365.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 7894]
          Length = 995

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/994 (56%), Positives = 701/994 (70%), Gaps = 56/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A     ++A  A  + +  D+G   + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGETEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN--------------------- 932
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGAAGGD 961

Query: 933 ------SSTHSLGIPSSCTSDT------ECEVCQ 954
                 ++         CT         ECE CQ
Sbjct: 962 APSGAMNAAPVEADGPVCTMRPGDPGFEECEACQ 995


>gi|134294682|ref|YP_001118417.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           vietnamiensis G4]
 gi|134137839|gb|ABO53582.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           vietnamiensis G4]
          Length = 996

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/995 (55%), Positives = 692/995 (69%), Gaps = 57/995 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSS 178
           RE+R   R       + A       + ++ D+G     +   L  ++  AC GL   V++
Sbjct: 131 REKRHLERQHAGEEAAAAGAESNTGINVV-DNGVTRPLDMNALRALIVSACDGLGTAVNA 189

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 190 DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             ++    +M   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 246 --EEVVQADMSARYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 304 QTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV + + WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+
Sbjct: 484 MNTANWIPDLFMKRVMEGSDWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 543

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI
Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWSTLRSRIAAHGMRNSNCVAIAPTATI 783

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT----------------------- 929
           WL GLKTTYYLR+ +AT VEKST+    G LNAVP +                       
Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSSGGAQGAAGGFGAAGGDVS 961

Query: 930 ----DPNSSTHSLGIPSSCTSDT------ECEVCQ 954
               +  +          CT         ECE CQ
Sbjct: 962 SGGLNAAALAPVEADGPVCTMRPGDPGFDECEACQ 996


>gi|107021672|ref|YP_619999.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia AU 1054]
 gi|116688618|ref|YP_834241.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia HI2424]
 gi|170731917|ref|YP_001763864.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia MC0-3]
 gi|105891861|gb|ABF75026.1| Ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            cenocepacia AU 1054]
 gi|116646707|gb|ABK07348.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            cenocepacia HI2424]
 gi|169815159|gb|ACA89742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            cenocepacia MC0-3]
          Length = 1001

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/1000 (55%), Positives = 688/1000 (68%), Gaps = 62/1000 (6%)

Query: 2    HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
             P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17   RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62   ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71   GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122  REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178
            RE+R   R       + A       + ++ D+G     +   L  ++  AC GL   V+ 
Sbjct: 131  REKRHLERQHAGEEAAAAGGESATGINVV-DNGVTRPLDQNALRALIVSACDGLGAAVNP 189

Query: 179  KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
              +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 190  DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245

Query: 239  KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 246  --EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303

Query: 299  QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 304  QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363

Query: 359  FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364  FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423

Query: 419  GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424  GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479  MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            MNTANWIPDLFMKRV +   WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+
Sbjct: 484  MNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 543

Query: 539  KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 544  KIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603

Query: 599  VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 604  VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
            R +G+G+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 664  RPVGMGIMGFQDCLHLLRTPYASQEAVEFADRSMEAVCYYAYHASTELAEERGRYSSYRG 723

Query: 714  SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            SLWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI
Sbjct: 724  SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTALRARIATHGMRNSNCVAIAPTATI 783

Query: 773  ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 784  SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843

Query: 833  NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
             I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 844  RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903

Query: 893  WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928
            WL GLKTTYYLR+ +AT VEKST+    G LNAVP                         
Sbjct: 904  WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSSSGGAQGAAGGFGAAG 961

Query: 929  --------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                        +          CT         ECE CQ
Sbjct: 962  GAASSGAVNAAAALAPVEADGPVCTMRPGDPGFDECEACQ 1001


>gi|331006662|ref|ZP_08329943.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC1989]
 gi|330419530|gb|EGG93915.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [gamma proteobacterium IMCC1989]
          Length = 963

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/958 (58%), Positives = 705/958 (73%), Gaps = 9/958 (0%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P+                        ++VIKRNG V  +   KI+ A+ KAF+AVEG  A
Sbjct: 9   PTNTSPLEKSSTGSYQTSVTATAPGKLRVIKRNGTVMPYAEDKIAIAVTKAFLAVEGGTA 68

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV + +K  T+Q      +   S   VHIEDIQDQVE +LM++G HK+ R+YVLYR
Sbjct: 69  AASSRVHETVKLFTQQISDTFNRRMPSGGTVHIEDIQDQVELTLMRNGEHKVARDYVLYR 128

Query: 123 EERSDVRAAQSHSKSDAPIA--PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
            ER+ VRA+ + + S   ++  PKL + +++G     +  R+  IV EAC GL DVS   
Sbjct: 129 AERARVRASATPAVSAEALSKYPKLNVTLENGDTAPLDMARIHTIVTEACEGLSDVSVDA 188

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L E  +N+YDG++ SD+ T+L+ ++RTL+EKEPNY+  TAR L +KLR E L       
Sbjct: 189 ILDEAMRNLYDGVALSDINTSLVITARTLVEKEPNYSYATARLLQDKLRAEALG-FLGIA 247

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ATHHEM   Y +    YIE+G++  LL  S+ +FD+  L   L + RD  F YLGLQ 
Sbjct: 248 EQATHHEMAHYYAQALPAYIEKGIELELLAPSLRNFDIPALGKALDHTRDSQFTYLGLQT 307

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H N  RIE+PQ FFMRVAMGLA++E +  +RA+EFY LLSSF +M STPTLFN
Sbjct: 308 LYDRYFIHSNDVRIELPQIFFMRVAMGLAVEEDKPTERAIEFYRLLSSFDYMSSTPTLFN 367

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGK
Sbjct: 368 AGTLRPQLSSCYLTTVPDDLHGIYGAMQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGK 427

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 428 SQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 487

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANW+PDLFMKRV     WTLF+P E  DLHDL G  FE  YE YER ADRGEIK F++I
Sbjct: 488 TANWVPDLFMKRVFDKKEWTLFTPSEAPDLHDLCGTAFETRYEEYERMADRGEIKHFKRI 547

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAV 599
            A +LWRKML MLFETGHPWITFKD CN+RSPQQHVGV+HSSNLCTEITLN+S+ +E AV
Sbjct: 548 PAESLWRKMLGMLFETGHPWITFKDSCNLRSPQQHVGVIHSSNLCTEITLNTSAGDEIAV 607

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGS+NL  H  N + +  KL +T+ TAVR+LDNVIDIN + +E A+ SN  HR IGLG
Sbjct: 608 CNLGSVNLAQHIENGELNTTKLEATVNTAVRMLDNVIDINYYAVEAARTSNMRHRPIGLG 667

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           LMGFQ AL+     Y+S +AVE AD SME IS+ AI+AS  LA ERG Y +F+GSLW +G
Sbjct: 668 LMGFQDALYKQGFAYSSDQAVEFADRSMEAISYFAINASSNLAAERGQYPTFEGSLWSKG 727

Query: 720 VFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
             PIDSI  L + R    + M+R+  L W  L+ +V+  GMRNSN MAIAPTATIANI G
Sbjct: 728 ELPIDSIETLVKQRGEKYIEMDRSQTLDWSSLRSKVQKQGMRNSNVMAIAPTATIANITG 787

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           VSQSI+P+YQNLYVKSN+SG+FTVVN +L+++LK+RDLWD  M++DLKY++GS+  +ERI
Sbjct: 788 VSQSIEPTYQNLYVKSNLSGEFTVVNPYLIHDLKKRDLWDAVMVNDLKYYEGSVQKVERI 847

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P DLK ++ATAFE++P W++ +ASRRQKW+DQAQSLNLY+   +GKKLD  YR AW  GL
Sbjct: 848 PADLKALYATAFEVEPRWIVSAASRRQKWLDQAQSLNLYIAGANGKKLDVTYRMAWYSGL 907

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           KTTYYLR+ SAT+ EKST+ G  G LNAV     +++  +  +P +C+ D  +CE CQ
Sbjct: 908 KTTYYLRALSATTTEKSTVSG--GTLNAVSSNAESAAPVAAAVPKACSIDEPDCEACQ 963


>gi|145588392|ref|YP_001154989.1| ribonucleotide-diphosphate reductase subunit alpha
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046798|gb|ABP33425.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 993

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/957 (57%), Positives = 694/957 (72%), Gaps = 32/957 (3%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
             ++   ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++ ++ LT   V  
Sbjct: 44  ATQLSDYKIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRA 103

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           LL+   +    HIEDIQDQVE +LM+SG H + R YVLYRE+R+  RAAQ     ++  A
Sbjct: 104 LLRSRPNGGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVAQESQSA 163

Query: 143 PK-----LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSES 196
            +     +K+  D+G     +   L  ++E AC GL   + +  +++ET KN+YDG+  +
Sbjct: 164 GQATESGIKVT-DNGVEKWLDMAALRTVIEAACEGLGNHIDATPIITETIKNLYDGVPMA 222

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            +  + I +SRTLIEK+P +++VTAR L+  +R+E+L       ++    +MQ  Y  YF
Sbjct: 223 QVYDSAILASRTLIEKDPAFSQVTARILMHVIRKEILG------KEVLQGDMQSEYGTYF 276

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
            +YI EG+ A LL   M +FDL  LA  L   RD  F YLGLQ LYDRYFLHI   RIEM
Sbjct: 277 AKYINEGISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEM 336

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQAFFMRVAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T  PQLSSC+LTTV
Sbjct: 337 PQAFFMRVAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTV 396

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAV
Sbjct: 397 EDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAV 456

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV +N
Sbjct: 457 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEN 516

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP    DLHD YGK FE AY  YE++ADRGE+K FR+I A  LWRKML MLFET
Sbjct: 517 GDWTLFSPSNTPDLHDKYGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFET 576

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN++  E AVCNLGS+NL AH   +  
Sbjct: 577 GHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNTNETEIAVCNLGSVNLTAHMTTDAN 636

Query: 617 -----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D++KL  T+RTA+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ  LH+  
Sbjct: 637 GKLVLDHEKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQR 696

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IPYAS EAV+ AD SME + ++A  AS ELA+ERG YS++ GSLWD+G+ P DS+ LLA+
Sbjct: 697 IPYASEEAVKFADSSMEAVCYYAYQASNELAEERGVYSTYTGSLWDRGILPQDSVALLAQ 756

Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   L ++ +S + W  L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNL+
Sbjct: 757 ERGGYLEVDNSSTMDWSGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLF 816

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FTVVN +LV +LK R LWDE MI+DLKY DG++  I+RIP DL+ ++ATAFE
Sbjct: 817 VKSNLSGEFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFE 876

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           ++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT 
Sbjct: 877 VEPSWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDDTYKLAWLRGLKTTYYLRTMAATH 936

Query: 911 VEKSTLK-------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
           VEKST+           G +N    T  +++         CT         ECE CQ
Sbjct: 937 VEKSTVASGQLNSVSSGGGVNGTDATAASAAGGVEADGPVCTMRPGDAGFEECEACQ 993


>gi|171318521|ref|ZP_02907673.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            ambifaria MEX-5]
 gi|171096307|gb|EDT41213.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
            ambifaria MEX-5]
          Length = 1001

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/1000 (55%), Positives = 692/1000 (69%), Gaps = 62/1000 (6%)

Query: 2    HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
             P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17   RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62   ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71   GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122  REERSDVRA--AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178
            RE+R   R    +  + +    +  + ++ D+G     +   L  ++  AC+GL   V+ 
Sbjct: 131  REKRHLERQHAGEEAAAAGGEASAGINVV-DNGVTRPLDMNALRELIVSACAGLGAAVNP 189

Query: 179  KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
            + +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 190  EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245

Query: 239  KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 246  --EEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303

Query: 299  QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 304  QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363

Query: 359  FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364  FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423

Query: 419  GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424  GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479  MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            MNTANWIPDLFMKRV + A WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+
Sbjct: 484  MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 543

Query: 539  KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 544  KIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603

Query: 599  VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 604  VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
            R +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 664  RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYHASTELAEERGRYSSYRG 723

Query: 714  SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            SLWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI
Sbjct: 724  SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTALRARIAAHGMRNSNCVAIAPTATI 783

Query: 773  ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 784  SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843

Query: 833  NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
             I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 844  RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903

Query: 893  WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP------------------------- 927
            WL GLKTTYYLR+ +AT VEKST+    G LNAVP                         
Sbjct: 904  WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSGSGGAQGAAGGFGAAG 961

Query: 928  -------VTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                   V    +          CT         ECE CQ
Sbjct: 962  GGASSGAVNAAPALAPVEADGPVCTMRPGDPGFDECEACQ 1001


>gi|206561766|ref|YP_002232531.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
            cenocepacia J2315]
 gi|198037808|emb|CAR53752.1| putative ribonucleoside reductase [Burkholderia cenocepacia J2315]
          Length = 1003

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/1000 (55%), Positives = 687/1000 (68%), Gaps = 62/1000 (6%)

Query: 2    HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
             P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 19   RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 72

Query: 62   ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
             + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 73   GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 132

Query: 122  REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178
            RE+R   R       + A       + ++ D+G     +   L  ++  AC GL   V+ 
Sbjct: 133  REKRHLERQHAGEEAAAAGGESTTGINVV-DNGVTRPLDLNALRALIVSACDGLGAAVNP 191

Query: 179  KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
              +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 192  DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 247

Query: 239  KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 248  --EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 305

Query: 299  QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            Q LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 306  QTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 365

Query: 359  FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 366  FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 425

Query: 419  GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 426  GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 485

Query: 479  MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            MNTANWIPDLFMKRV + A WTLFSP    DLHD +G +FE AY  YE +  RGEIK+F+
Sbjct: 486  MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 545

Query: 539  KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 546  KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 605

Query: 599  VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 606  VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 665

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
            R +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 666  RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 725

Query: 714  SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            SLWD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI
Sbjct: 726  SLWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATI 785

Query: 773  ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 786  SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 845

Query: 833  NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
             I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 846  RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 905

Query: 893  WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928
            WL GLKTTYYLR+ +AT VEKST+    G LNAVP                         
Sbjct: 906  WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSGSGGAQGAAGGFGAAG 963

Query: 929  --------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                        +          CT         ECE CQ
Sbjct: 964  GDASSGAINAAPALAPVEADGPVCTMRPGDPGFDECEACQ 1003


>gi|121606274|ref|YP_983603.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas
           naphthalenivorans CJ2]
 gi|120595243|gb|ABM38682.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 967

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/968 (55%), Positives = 700/968 (72%), Gaps = 32/968 (3%)

Query: 8   NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67
           + G   +    A P    +   Q+I+RNG V +F+PSKI+ A+MKAF+AV G   + S  
Sbjct: 11  SSGVPASNSIHATPASGALANYQIIRRNGSVVAFEPSKIAVAMMKAFLAVHGTQGAASAS 70

Query: 68  VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
           V++ +  LT+  V  L++   S    HIED+QDQVE  LM+ GHH+I R YVLYRE+ + 
Sbjct: 71  VRETVDTLTQAVVRALMRSRPSGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYREKHNQ 130

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETY 186
            RA Q   ++  P  P+L +M D G  ++ + + L+ ++E +C+ L  DV    ++SET 
Sbjct: 131 ERARQ--LQAQTPALPQLHVM-DGGKRVALDLRNLQALIEASCANLGTDVKPDPIVSETM 187

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  +R+EVL       ++ +H 
Sbjct: 188 RNLYDGVPIEEVYKASILAARTLIEKDPDYTYATARLLLHTIRKEVLD------EEISHE 241

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
            M   Y  YF  +I +G+K  LL E +  FDL  L   LK ERD  F+YLGLQ L+DRYF
Sbjct: 242 AMAVRYVTYFPEFIAKGIKNELLDEKLQQFDLARLGAALKPERDLQFDYLGLQTLFDRYF 301

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           LHI   RIE+PQAFFMRVAMGL+L ET++E RA+EFY +LSSF FM STPTLFN+GT   
Sbjct: 302 LHIRKQRIELPQAFFMRVAMGLSLNETDREARAIEFYEILSSFDFMSSTPTLFNAGTLRS 361

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSC+LTTV DDL GI+ A++ENA+L+K++GGLGNDWTPVR +GAHI GTNG+SQGV+P
Sbjct: 362 QLSSCYLTTVADDLGGIYDAIKENALLSKFAGGLGNDWTPVRAMGAHIKGTNGESQGVVP 421

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIP
Sbjct: 422 FLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIP 481

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFM+RV +   WTLFSP +  DLHD +G++FE AY  YE +A+RGE+K  RK+ A  +W
Sbjct: 482 DLFMRRVMEKGSWTLFSPSDTPDLHDKFGQDFEKAYVAYEARAERGELKPSRKLQATDMW 541

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           RKML+MLFETGHPWITFKD CNIRSPQQH GVVHSSNLCTEITLN+S+ ETAVCNLGSIN
Sbjct: 542 RKMLSMLFETGHPWITFKDACNIRSPQQHAGVVHSSNLCTEITLNTSATETAVCNLGSIN 601

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           L+ H  +   D+DKL  TI TA+R+LDNVIDIN + +EKA+ SN  HR +GLGLMGFQ  
Sbjct: 602 LVQHLKDGALDHDKLKKTITTAMRMLDNVIDINYYAVEKARHSNMRHRPVGLGLMGFQDC 661

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+ L +PYAS  AVE AD SME I +HA  AS ELA+ERG Y S+KGSLWDQG+ P+D++
Sbjct: 662 LYELRVPYASQAAVEFADTSMEAICYHAYWASTELARERGQYESYKGSLWDQGILPLDTL 721

Query: 727 GLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            +LA+ R   + ++R++ L WD L++++ T GMRNSNC+AIAPTATI+NI GV   I+P 
Sbjct: 722 DMLAKERGGYVEVDRSATLDWDALRQKIATDGMRNSNCVAIAPTATISNIIGVDACIEPC 781

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P+D+K ++
Sbjct: 782 FGNLSVKSNLSGEFTVINHYLVRDLKKLGLWDDVMVVDLKHFDGSLRPIDRVPNDIKALY 841

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFEI+  WL+E+ SRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR+
Sbjct: 842 ATAFEIETSWLVEAGSRRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRT 901

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIPSSCTS 946
           +SAT  EKST++   GK+N+V      +                   +T +  I      
Sbjct: 902 QSATHAEKSTVQA--GKMNSVSSAPAAAMLGMSAIDKAAAAAQAQMSATPATDIKFCAID 959

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 960 DPGCEACQ 967


>gi|149927166|ref|ZP_01915423.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
 gi|149824105|gb|EDM83326.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
          Length = 969

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/969 (55%), Positives = 696/969 (71%), Gaps = 41/969 (4%)

Query: 14  AFPSLAYPF-PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           + P+ A P         ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S R+++++
Sbjct: 14  SKPAGAAPVVDSAYSNYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARIRELV 73

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + +T   V  L++   S  I HIEDIQDQVE +LM+SG  ++ R YVLYRE R+  RAA+
Sbjct: 74  EQMTGSVVNALVRRQPSGGIFHIEDIQDQVELALMRSGEAEVARAYVLYRERRAQERAAK 133

Query: 133 SHSKSDAPIAPKLKIMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
              +++      +     DG      + + L+ ++E A  GL ++    +  ET KN+YD
Sbjct: 134 QVEQAEQHALNVM-----DGDIKRPLDVEALKALIESAAVGLNEIDVAHLQKETLKNLYD 188

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+   ++  + I +SR +IE EP+Y  VT+R LL  +RRE++       ++    EM  +
Sbjct: 189 GVKIDEVFKSAILASRAMIENEPSYTLVTSRLLLHTIRREIIG------REIAQDEMAQV 242

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           YPEYF ++I++G+ A LL   +  FD+  L   LKYERD  F+YLGLQ LYDRYFLH+ G
Sbjct: 243 YPEYFPQFIKKGIAAGLLDNRLAQFDMKKLGAALKYERDLQFDYLGLQTLYDRYFLHVEG 302

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +RIEMPQAF+MRVAMGLAL E ++E RA+EFY +LS+F FM STPTLFNSGT   QLSSC
Sbjct: 303 TRIEMPQAFYMRVAMGLALNEVDREARAIEFYEVLSTFDFMSSTPTLFNSGTIRSQLSSC 362

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTT+ DDL  I+  ++ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV 
Sbjct: 363 YLTTIGDDLDDIYEGIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVV 422

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMK
Sbjct: 423 NDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMK 482

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV +   WTLFSP +  DLHDLYGK FE AY  YE +A RG++K+F+ + A  LWRK+L+
Sbjct: 483 RVMEGGNWTLFSPSDCPDLHDLYGKAFEKAYVGYEEKAARGDLKLFKTVEAAKLWRKILS 542

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL  H 
Sbjct: 543 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNENEIAVCNLGSVNLTRHL 602

Query: 612 ANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                     D++KL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G+MGFQ A
Sbjct: 603 KPADNGELVLDHEKLQKTVGVAMRMLDNVIDINYYAVAKARNSNLRHRPVGMGMMGFQDA 662

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           LH++  PYAS +AVE ADESME I ++A  AS ELA ERGAYS+FKGSLWD+G+ P+DS+
Sbjct: 663 LHMMRKPYASRDAVEFADESMEAICYYAYEASTELAAERGAYSTFKGSLWDKGIMPLDSL 722

Query: 727 GLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
            LL E R   + ++ +SR+ WD L+ R+K  GMRNSNC+AIAPTATI+NI GV+ SI+P+
Sbjct: 723 KLLEEERGGYVEVDTSSRMDWDALRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPT 782

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +QNLYVKSN+SG+FT+VN  LV +LK+  +WDE MISDLKY DGS+  I+RIP+DLK+++
Sbjct: 783 FQNLYVKSNLSGEFTIVNEHLVRDLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLY 842

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           ATAFE+DP WL+E+A+RRQKWIDQ QSLN+Y+   SGK+LD  Y+ AW+ GLKTTYYLR+
Sbjct: 843 ATAFEMDPRWLVEAAARRQKWIDQGQSLNIYMAGVSGKRLDDTYKLAWIRGLKTTYYLRT 902

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSS--------------THSLGIPSSCTSDT--- 948
             AT  EKSTL G  G+LN+V      S+                       CT      
Sbjct: 903 IGATHAEKSTLAG--GELNSVNAEGGASAAFTSAPATGLVPNLPEQEIEGKVCTMRPGDA 960

Query: 949 ---ECEVCQ 954
              ECE CQ
Sbjct: 961 GFDECEACQ 969


>gi|312795098|ref|YP_004028020.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
            rhizoxinica HKI 454]
 gi|312166873|emb|CBW73876.1| Ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1)
            [Burkholderia rhizoxinica HKI 454]
          Length = 1046

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/1002 (55%), Positives = 701/1002 (69%), Gaps = 58/1002 (5%)

Query: 1    MHPSKDVNKGDEDAFPSL----------AYPFPEK-IKGVQVIKRNGGVTSFDPSKISRA 49
            M  +++V      A   L              P+  +   +VI+RNG V SF+PSKI+ A
Sbjct: 55   MQTTENVTSQQPSAAAGLPHGGGAAHGARALAPQATLADYKVIRRNGSVVSFEPSKIAIA 114

Query: 50   IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
            + KAF+AV G   + S RV++ ++ LT+  V  L++   +    HIEDIQDQVE +LM++
Sbjct: 115  VTKAFLAVNGGQGAASARVRESVETLTQAVVRALVRSRPNGGTFHIEDIQDQVELALMRA 174

Query: 110  GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
            G H + R YVLYRE+R+  RA   H  +  P    L +  D+G +   +   L  ++  A
Sbjct: 175  GEHNVARAYVLYREKRAAERA---HEVAQQPAQGGLNV-NDNGIVRPLDLAALRNVITAA 230

Query: 170  CSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
            C GL + VS++ +++ET KN+YDG+  S +  + I ++RT+IEKEP Y++VTAR LL  +
Sbjct: 231  CDGLGEAVSAEPIVAETVKNLYDGVPLSQVYDSAILAARTMIEKEPAYSQVTARLLLHTI 290

Query: 229  RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
            RRE+L       ++    EM   Y EYF ++++ GV+A LL E ++ FDL  L + L   
Sbjct: 291  RREILG------EEVLQSEMGARYAEYFPQFLKRGVEAELLDEKLLQFDLKKLGDALDAS 344

Query: 289  RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            RD  F YLGLQ LYDRYFLH++G RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LS+
Sbjct: 345  RDLKFGYLGLQTLYDRYFLHVDGQRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLST 404

Query: 349  FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F FM STPTLFNSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR
Sbjct: 405  FDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLEGIYEALKENALLSKFAGGLGNDWTRVR 464

Query: 409  GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKN
Sbjct: 465  ALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKN 524

Query: 469  TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            TGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +
Sbjct: 525  TGDDRRRTHDMNTANWIPDLFMKRVIEGGDWTLFSPSSCPDLHDKFGAEFEQAYVAYEEK 584

Query: 529  ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            A RGE+K+F+KI A  LWRKML MLFETGHPWITFKDPC +RSPQQHVGVVHSSNLCTEI
Sbjct: 585  AARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCXVRSPQQHVGVVHSSNLCTEI 644

Query: 589  TLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            TLN+S  E AVCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + +
Sbjct: 645  TLNTSDNEIAVCNLGSVNLVAHMKQGADXGYVLDHDKLKRTISVAMRMLDNVIDINYYAV 704

Query: 644  EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
             KA+ SN  HR +G+G+MGFQ  LHLL  PYAS +AVE AD SME I ++A  AS ELA 
Sbjct: 705  AKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQQAVEFADRSMEAICYYAYWASTELAS 764

Query: 704  ERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERG YSS++GSLWD+G+ P D++ LLA+ R   + ++ +  + W  L++R+ T GMRNSN
Sbjct: 765  ERGRYSSYRGSLWDRGILPQDTLKLLADSRGGYVEVDSSETMDWAALRERIATHGMRNSN 824

Query: 763  CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            C+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++
Sbjct: 825  CVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVA 884

Query: 823  DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            DLKY DGS+  I+RIP DL++ +ATAFE+DP WL+E+A+RRQKWIDQAQSLN+Y+   SG
Sbjct: 885  DLKYFDGSLARIDRIPADLRETYATAFEVDPKWLVEAAARRQKWIDQAQSLNIYMAGASG 944

Query: 883  KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST------------------------LKG 918
            KKLD IY+ AWL GLKTTYYLR+ +AT VEKST                        + G
Sbjct: 945  KKLDEIYKLAWLRGLKTTYYLRTIAATHVEKSTVAHGALNAVPSSDGGVGAMHGAGGVSG 1004

Query: 919  VDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                 NA      ++ +        C          ECE CQ
Sbjct: 1005 SATARNAGVHAAADAGSQDEIAGPVCMLRPGDAGFDECEACQ 1046


>gi|307731038|ref|YP_003908262.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
           sp. CCGE1003]
 gi|307585573|gb|ADN58971.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1003]
          Length = 1000

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/933 (59%), Positives = 693/933 (74%), Gaps = 25/933 (2%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
            +    +G++   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   
Sbjct: 18  QTFGQAQGNQALAPQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQG 71

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLYR
Sbjct: 72  AASARVRELVEQLTQNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYR 131

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E+R+  RA   H +  A   P L +  D+G     +   L  I+E AC+ L D VS++ +
Sbjct: 132 EKRTQARA---HDEQAAGSTPGLSVT-DNGVTRPLDMAALRGIIESACANLGDAVSAEPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       +
Sbjct: 188 VAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EE 241

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           + T  EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ L
Sbjct: 242 EVTQAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNS
Sbjct: 302 YDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNS 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS
Sbjct: 362 GTRRSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKS 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI 
Sbjct: 482 ANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIP 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCN
Sbjct: 542 AAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCN 601

Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +
Sbjct: 602 LGSVNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPV 661

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELA+ERG YSS++GSLW
Sbjct: 662 GMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAEERGRYSSYRGSLW 721

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+G+ P DS+ LLAE R   + ++ +  + W EL++R+ T GMRNSNC+AIAPTATI+NI
Sbjct: 722 DRGILPQDSVKLLAEARGGYVEVDSSESMDWSELRQRIATYGMRNSNCIAIAPTATISNI 781

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+
Sbjct: 782 IGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRID 841

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ 
Sbjct: 842 RIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVR 901

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           GLKTTYYLR+ +AT VEKST+    G LNAV  
Sbjct: 902 GLKTTYYLRTMAATHVEKSTV--AHGALNAVSS 932


>gi|53720600|ref|YP_109586.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei K96243]
 gi|53726101|ref|YP_104056.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei ATCC 23344]
 gi|67643594|ref|ZP_00442339.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Burkholderia mallei GB8 horse 4]
 gi|76810342|ref|YP_334882.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 1710b]
 gi|121601276|ref|YP_991781.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei SAVP1]
 gi|124384186|ref|YP_001027274.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei NCTC 10229]
 gi|126439753|ref|YP_001060485.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 668]
 gi|126448585|ref|YP_001082789.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           mallei NCTC 10247]
 gi|126454560|ref|YP_001067749.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 1106a]
 gi|134280283|ref|ZP_01766994.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 305]
 gi|166998594|ref|ZP_02264452.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei PRL-20]
 gi|167825889|ref|ZP_02457360.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 9]
 gi|217420768|ref|ZP_03452273.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|226196789|ref|ZP_03792368.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813880|ref|YP_002898331.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Burkholderia pseudomallei MSHR346]
 gi|242315545|ref|ZP_04814561.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106b]
 gi|254178878|ref|ZP_04885532.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 10399]
 gi|254180585|ref|ZP_04887183.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1655]
 gi|254190978|ref|ZP_04897484.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199123|ref|ZP_04905538.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei S13]
 gi|254202775|ref|ZP_04909138.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei FMH]
 gi|254208117|ref|ZP_04914467.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei JHU]
 gi|254257988|ref|ZP_04949042.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299328|ref|ZP_04966778.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 406e]
 gi|52211014|emb|CAH37002.1| putative ribonucleoside reductase [Burkholderia pseudomallei
           K96243]
 gi|52429524|gb|AAU50117.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 23344]
 gi|76579795|gb|ABA49270.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710b]
 gi|121230086|gb|ABM52604.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei SAVP1]
 gi|124292206|gb|ABN01475.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei NCTC 10229]
 gi|126219246|gb|ABN82752.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 668]
 gi|126228202|gb|ABN91742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106a]
 gi|126241455|gb|ABO04548.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei NCTC 10247]
 gi|134248290|gb|EBA48373.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 305]
 gi|147747022|gb|EDK54099.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei FMH]
 gi|147752011|gb|EDK59078.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei JHU]
 gi|157809187|gb|EDO86357.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 406e]
 gi|157938652|gb|EDO94322.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160694792|gb|EDP84800.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei ATCC 10399]
 gi|169656953|gb|EDS88350.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei S13]
 gi|184211124|gb|EDU08167.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1655]
 gi|217396180|gb|EEC36197.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|225931049|gb|EEH27057.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505593|gb|ACQ97911.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Burkholderia pseudomallei MSHR346]
 gi|238524966|gb|EEP88396.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Burkholderia mallei GB8 horse 4]
 gi|242138784|gb|EES25186.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1106b]
 gi|243065277|gb|EES47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           mallei PRL-20]
 gi|254216677|gb|EET06061.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           pseudomallei 1710a]
          Length = 995

 Score =  982 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/994 (56%), Positives = 701/994 (70%), Gaps = 56/994 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A     ++A  A  + +  D+G   + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN--------------------- 932
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +                        
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGAAGGD 961

Query: 933 ------SSTHSLGIPSSCTSDT------ECEVCQ 954
                 ++         CT         ECE CQ
Sbjct: 962 APSGAMNAAPVEADGPVCTMRPGDPGFEECEACQ 995


>gi|319791702|ref|YP_004153342.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus EPS]
 gi|315594165|gb|ADU35231.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax
           paradoxus EPS]
          Length = 971

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 540/972 (55%), Positives = 701/972 (72%), Gaps = 35/972 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           PS  V +  +    +   P  + +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   
Sbjct: 15  PSTPVQQQRD----TAGSPTGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQG 70

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++ +  LT+  +  +++        HIED+QDQVE  LM+ GHH+I R YVLYR
Sbjct: 71  AASASVRETVDVLTQGVIRAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYR 130

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E R+  R+     + +AP  P L ++ D+G  ++ +  +L+ ++E AC  L D +++  +
Sbjct: 131 ERRTQERS--KQVEQEAPATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + +E++        
Sbjct: 188 VAETMRNLYDGVPLDEVYKASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPVD 247

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +AT       Y +YF ++I++GV+  LL E ++ +DL  L   LK ERD  F+YLGLQ L
Sbjct: 248 RAT------AYADYFPQFIKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH+  +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+
Sbjct: 302 YDRYFLHVRKTRIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNA 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+S
Sbjct: 362 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGES 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  R I 
Sbjct: 482 ANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQ 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCN
Sbjct: 542 ASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCN 601

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+NLL H  + + D +KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLM
Sbjct: 602 LGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLM 661

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ AL+ L IPYAS EAV+ ADESME I +HA  AS ELA+ERG YSS+KGSLWD+G+ 
Sbjct: 662 GFQDALYELRIPYASQEAVQFADESMEAICYHAYWASTELAKERGKYSSYKGSLWDKGIL 721

Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           PID++ LL + R   + ++R++ L WD L+ ++K  GMRNSNC+AIAPTATI+NI GV  
Sbjct: 722 PIDTLDLLEQARGGYVEVDRSATLDWDALRAKIKADGMRNSNCVAIAPTATISNIIGVDA 781

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI+P + NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D
Sbjct: 782 SIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQD 841

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           +K ++ATAFE++  WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTT
Sbjct: 842 VKALYATAFEVETTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 901

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST------------------HSLGIPS 942
           YYLR++SAT  EKST++   G+LNAV   +   S                    +  I  
Sbjct: 902 YYLRTQSATHAEKSTVQ--SGRLNAVSSGNDAPSGMSALEAAAAAAKAQMSAMPATDIAF 959

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 960 CGVDDPTCEACQ 971


>gi|332530700|ref|ZP_08406631.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
           gracilis ATCC 19624]
 gi|332039868|gb|EGI76263.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella
           gracilis ATCC 19624]
          Length = 988

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/985 (53%), Positives = 685/985 (69%), Gaps = 45/985 (4%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +              A      +   Q+I+RNG V  F+PSKI+ A+MKAF+AV G   +
Sbjct: 15  ATTTLPQGASMTHGAALGANSALAHYQIIRRNGAVVPFEPSKIAVALMKAFLAVHGAQGA 74

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S  V++ +  LT+  V  L +        HIED+QDQVE  LM+ GHH++ R YVLYR 
Sbjct: 75  ASASVRETVDGLTQAVVRALTRSRPGGGTFHIEDVQDQVELGLMRGGHHEVARAYVLYRA 134

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVL 182
           +R++ R    H+   AP  P L +  D+G  ++ +  RL+ ++E AC+ L  DV +  ++
Sbjct: 135 KRAEER--AQHAAQAAPQTPVLHVT-DNGQRVALDLNRLQRLIESACANLSADVKADPIV 191

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L   + +EVL       + 
Sbjct: 192 AETLRNLYDGVPLEEVYKAAILAARTLIEKDPDYTYATARLLFHTIAKEVLG------RD 245

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
               EM+  Y +YF  +I++GV A LL+  ++ +DL  L   LK ERD  F+YLGLQ LY
Sbjct: 246 VQPSEMKQAYADYFPGFIKKGVDAELLNPELLQYDLKRLGAALKSERDQQFDYLGLQTLY 305

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           DRYFLH+  +RIE+PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSG
Sbjct: 306 DRYFLHVKKTRIELPQAFFMRVAMGLALNEIDREARAIEFYEVLSSFDFMSSTPTLFNSG 365

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           T   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQ
Sbjct: 366 TLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQ 425

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA
Sbjct: 426 GVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 485

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           NWIPDLFM+RV +   WTLFSP +  DLHDL+G  FE AY  YE +A RGE+K  + + A
Sbjct: 486 NWIPDLFMRRVMEKGEWTLFSPSDAPDLHDLFGSAFEKAYVAYEAKAKRGELKPSKTVPA 545

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
           + LWRKML+MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNL
Sbjct: 546 IDLWRKMLSMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNL 605

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL  H  + + D++KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+M 
Sbjct: 606 GSVNLKQHITDGKLDHEKLKKTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMA 665

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           FQ AL+ + IPYAS  AV+ ADESME I ++A  AS ELA+ERG YSS++GSLW +G+ P
Sbjct: 666 FQDALYEMRIPYASDAAVQFADESMEAICYYAYWASTELARERGVYSSYQGSLWSKGILP 725

Query: 723 IDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D++ LLA  R   + ++R++ L W+ L+K++   GMRNSNC+AIAPTATI+NI GV  S
Sbjct: 726 PDTLELLARERGGYVEVDRSATLDWELLRKKIAADGMRNSNCVAIAPTATISNIIGVDAS 785

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P + NL VKSN+SG+FT++N +LV +LK+  LWDE M+ DLK+ DGS+  I+R+P D+
Sbjct: 786 IEPCFGNLSVKSNLSGEFTIINGYLVKDLKRLGLWDEVMVMDLKHFDGSLLPIDRVPQDI 845

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K ++ATAFE++P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW  GLKTTY
Sbjct: 846 KALYATAFEVEPSWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTY 905

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS------------------------ 937
           YLR+ SAT  EKST+    G+LNAV      +   +                        
Sbjct: 906 YLRTTSATQAEKSTV--AAGRLNAVSSGSSETGAAAMAPVTSKPASAKKVSALEAAAAAA 963

Query: 938 --------LGIPSSCTSDTECEVCQ 954
                     I      D  CE CQ
Sbjct: 964 QTQMAVAATDIKFCAIDDPGCEACQ 988


>gi|120609558|ref|YP_969236.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
           citrulli AAC00-1]
 gi|120588022|gb|ABM31462.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           citrulli AAC00-1]
          Length = 983

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/988 (54%), Positives = 682/988 (69%), Gaps = 43/988 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPE--KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           + PS      D+        P      +   Q+I+RNG V  F+P KI+ A+MKAF+AV 
Sbjct: 5   LSPSSATTAPDQTPTAQGTEPAAGGHPLSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVH 64

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G   + S  V++ +  LT+  V  L++        HIED+QD VE SLM+ GHH++ R Y
Sbjct: 65  GTQGAASASVRETVDTLTQSVVRALMRSRPGGGTFHIEDVQDNVELSLMRGGHHEVARAY 124

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVS 177
           VLYRE R+  RA Q H +   P  P L ++ D+G  +  +  RL  +++ AC+ L  DV 
Sbjct: 125 VLYRERRTQERAHQQHDRQPVPSTPVLHVI-DNGQRVPLDEARLRGLIDSACANLGADVH 183

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
           +  +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL    
Sbjct: 184 AAPIVAETLRNLYDGVPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQ-- 241

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
                    +M   Y  YF ++I++GV   LL   ++ +DLV L   L   RD  F+YLG
Sbjct: 242 ----DVVPADMGPAYAAYFPQFIQKGVDNELLDPRLLQYDLVRLGAALDAGRDQQFDYLG 297

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           LQ LYDRYFLH+  +RIE+PQ FFMRVAMGLAL E ++E RA+EFY +LSSF FM STPT
Sbjct: 298 LQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDREARAIEFYEVLSSFDFMSSTPT 357

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GT
Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH
Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  
Sbjct: 478 DMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFGADFEKAYVAYEEKAARGEIKPS 537

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R + A  LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ET
Sbjct: 538 RTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDAET 597

Query: 598 AVCNLGSINLLAHFANNQF----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           AVCNLGS+NL+ H  +       D+ KL  TI TA+R+LDNVIDIN + +EKA+ SN  H
Sbjct: 598 AVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRMLDNVIDINYYAVEKARNSNMRH 657

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLGLM FQ +L+ L IPYAS  AVE AD SME I ++A  AS ELAQERG YSS+ G
Sbjct: 658 RPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAICYYAYWASTELAQERGKYSSYPG 717

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ PID++ LL + R   + ++R + L WD L++++   GMRNSNC+AIAPTATI
Sbjct: 718 SLWDRGILPIDTLDLLEKARGGYVEVDRAATLDWDALRQKIARDGMRNSNCVAIAPTATI 777

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GV  SI+PS+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+  GS+ 
Sbjct: 778 SNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRDLKRLGLWDDVMVMDLKHFKGSLH 837

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+R+P D+K +++TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ A
Sbjct: 838 PIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDETYKLA 897

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--------------- 937
           W+ GLKTTYYLR++SAT VE ST+     +LNAV     ++   +               
Sbjct: 898 WVRGLKTTYYLRTQSATHVEMSTVNTR--QLNAVSSGSDSAMQAAGTGAARPSALDAAAA 955

Query: 938 -----------LGIPSSCTSDTECEVCQ 954
                        +      D  CE CQ
Sbjct: 956 AAQSQAAALPATDVKFCAIDDPTCEACQ 983


>gi|309783063|ref|ZP_07677782.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
           5_7_47FAA]
 gi|308918171|gb|EFP63849.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 994

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 563/993 (56%), Positives = 694/993 (69%), Gaps = 52/993 (5%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +PS+   + G     P  A      +   ++I+RNG V SF+PSKI+ A+ KAF+AV G 
Sbjct: 14  NPSQFAQSAGGTAVAPGTASGV--NLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++++   T+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 72  QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           YRE R+  RA    +    P    L +  D G     +   L  ++  AC GL + V  +
Sbjct: 132 YRERRAQERAQAGET-QQQPAFIGLNVT-DGGISRPLDMAALRNVIVSACEGLGEAVDPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  + +  + I +SRTLIEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++IE G+ A LL + +  FDL  L   L   RDF F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIERGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHIN +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 304 TLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D++KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQPDGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ ALH+L +PYAS  AV+ AD SME + ++A  AS ELA+ERG YSS+KGS
Sbjct: 664 PVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLAE R   L  + +S + WD L+ R+K  GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW
Sbjct: 844 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH----------------- 936
           L GLKTTYYLR+  AT VEKST+    G LNAV                           
Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDVGGVSAAGASGVTSAAPTSALD 961

Query: 937 ---------SLGIPSSCTSDT------ECEVCQ 954
                         + CT         ECE CQ
Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994


>gi|241664220|ref|YP_002982580.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           pickettii 12D]
 gi|240866247|gb|ACS63908.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
          Length = 994

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 563/993 (56%), Positives = 694/993 (69%), Gaps = 52/993 (5%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +PS+   + G     P  A      +   ++I+RNG V SF+PSKI+ A+ KAF+AV G 
Sbjct: 14  NPSQFAQSAGGTAVAPGTASGV--NLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++++   T+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 72  QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           YRE R+  RA    +    P    L +  D G     +   L  ++  AC GL D V  +
Sbjct: 132 YRERRAQERAQAGET-QQQPAFIGLNVT-DGGISRPLDMVALRNVIVSACEGLGDAVDPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  + +  + I +SRTLIEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL + +  FDL  L   L   RDF F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHIN +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 304 TLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D++KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ ALH+L +PYAS  AV+ AD SME + ++A  AS ELA+ERG YSS+KGS
Sbjct: 664 PVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLAE R   L  + +S + WD L+ R+K  GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW
Sbjct: 844 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH----------------- 936
           L GLKTTYYLR+  AT VEKST+    G LNAV                           
Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDVGGVSAAGASGVTSAAPTSALD 961

Query: 937 ---------SLGIPSSCTSDT------ECEVCQ 954
                         + CT         ECE CQ
Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994


>gi|113869189|ref|YP_727678.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha H16]
 gi|113527965|emb|CAJ94310.1| Ribonucleoside-diphosphate reductase alpha subunit [Ralstonia
           eutropha H16]
          Length = 977

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/977 (56%), Positives = 700/977 (71%), Gaps = 36/977 (3%)

Query: 6   DVNKGDEDAFPSLAYPFPEKI----KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
                     P+                ++I+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 9   TTGGAAAGIAPTAQQTPANAANTNYPDHKIIRRNGAVVAFEPSKIAVAMTKAFLAVNGGQ 68

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++I++ LT+  V  L++   +   +HIED+QD VE +LM+SG H++ R YVLY
Sbjct: 69  GAASARVREIVEQLTDNVVRALVRSRPNGGAIHIEDVQDHVELALMRSGEHEVARAYVLY 128

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R D RA  +           + + + DG      +   L  +++ ACSGL + VS++
Sbjct: 129 REKRKDERAQANAQAVARVQEGGISVNVTDGGVTHVLDIAALHDLIDNACSGLGNAVSAE 188

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+YDG+  + +  + I ++RTLIEK+P+Y++VTAR LL  +R+E+L T    
Sbjct: 189 PILKETLKNLYDGVPMTQVYDSAILAARTLIEKDPDYSQVTARILLHTIRKEILGT---- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
             + T  EM   Y EYF ++I  G++A LL E +  FDL  L   L   RDF F YLGLQ
Sbjct: 245 --EVTQAEMSTRYAEYFPKFIARGIEAELLDEQLATFDLARLGAALDAGRDFQFNYLGLQ 302

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 303 TLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDREARAIEFYQLLSSFDFMSSTPTLF 362

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 363 NSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 422

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 423 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 482

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GKEFE AY  YE +A  GE+K+F+K
Sbjct: 483 NTANWIPDLFMKRVMEGGEWTLFSPATCPDLHDKVGKEFEKAYLGYEAKAASGELKLFKK 542

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 543 LPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAV 602

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D+ KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 603 CNLGSVNLVAHMAKQADGTYALDHAKLQKTVRTAMRMLDNVIDINYYAVDKARNSNLRHR 662

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ  LH+L  PY+S  AV+ AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 663 PVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYHASTELAEERGRYSSYEGS 722

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLAE R   L ++ ++ + WD L+ R+K  GMRNSNC+AIAPTATI+
Sbjct: 723 LWDRGILPQDSLKLLAEERGGYLDVDMSATMDWDALRARIKQHGMRNSNCIAIAPTATIS 782

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DGS+  
Sbjct: 783 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSR 842

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW
Sbjct: 843 IDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 902

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS----------THSLGIPSS 943
           + GLKTTYYLR+ +AT VEKST+    G LNAV     + S                 + 
Sbjct: 903 VRGLKTTYYLRTMAATHVEKSTVSR--GSLNAVSSGSDSGSALDAAAASAPAMPEAEGAV 960

Query: 944 CTSDT------ECEVCQ 954
           CT         ECE CQ
Sbjct: 961 CTMRPGDPGFEECEACQ 977


>gi|171057073|ref|YP_001789422.1| ribonucleotide-diphosphate reductase subunit alpha [Leptothrix
           cholodnii SP-6]
 gi|170774518|gb|ACB32657.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptothrix
           cholodnii SP-6]
          Length = 958

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/945 (57%), Positives = 685/945 (72%), Gaps = 18/945 (1%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
           A        G Q+I+RNG V +F+P KI+ A+MKAF+AV G   + S  V++ +  LTE 
Sbjct: 23  AAANASAYVGYQIIRRNGAVVAFEPHKITVALMKAFLAVHGTHGAASASVRETVDGLTEA 82

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V  L++   S    HIEDIQDQVE  LM+ GHH + R YVLYRE R+  RA+Q    + 
Sbjct: 83  VVRALMRSRPSGGSFHIEDIQDQVELGLMRGGHHDVARAYVLYRERRTQERASQGR--AP 140

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESD 197
               P + +    G  +  +  RL  ++E AC+ L  +     VL+ET +N+YDG+S  +
Sbjct: 141 VAAEPAVMVTDR-GQRVPLDMARLAGLIEAACADLGPEAIGAPVLAETRRNLYDGVSIDE 199

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  A I ++RTLIEK+P+Y++VTAR L+  +RR+VL       ++ T  EM   Y +YF 
Sbjct: 200 VYKASILAARTLIEKDPSYSRVTARLLMHTIRRDVLG------EEVTQAEMAARYADYFP 253

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            +I++GV A LL E M  FDL  L   LK ERD  F+YLGLQ LYDRYFLHI   RIEMP
Sbjct: 254 AFIKKGVDAELLDERMAQFDLARLGAALKAERDLNFDYLGLQTLYDRYFLHIRKQRIEMP 313

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           QAFFMRVAMGLAL E ++E RA+EFY +LS+F FM STPTLFN+GTR  QLSSC+LTTVP
Sbjct: 314 QAFFMRVAMGLALNEIDREARAIEFYEVLSAFDFMSSTPTLFNAGTRRSQLSSCYLTTVP 373

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL GI+ A+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVA
Sbjct: 374 DDLEGIYDAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVA 433

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +  
Sbjct: 434 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGG 493

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLFSP    DLHDL+G  FE AY  YE +ADRGEI  F+++ AV LWRK+L+MLFETG
Sbjct: 494 DWTLFSPANCPDLHDLFGTAFEAAYTAYEARADRGEITFFKRVRAVDLWRKILSMLFETG 553

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           HPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL  H  + + D
Sbjct: 554 HPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNAGEIAVCNLGSVNLAQHVKDGEVD 613

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
             KL  T+ TA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ AL+ L +PYAS 
Sbjct: 614 QAKLCRTVTTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRVPYASN 673

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DEL 736
           EAVE AD SME + +HA  AS ELA ERG Y++++GSLWD+G+ PIDSI LLAE R   L
Sbjct: 674 EAVEFADRSMEAVCYHAYWASTELAAERGRYATYRGSLWDRGILPIDSIALLAEQRGGYL 733

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++  + L WD L+ R+   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+S
Sbjct: 734 DVDTRTTLDWDALRARIAQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLS 793

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTVVN +LV +LK   LWD+ M+ DLK+ DGS+  I+R+P++LK+++ATAFE++  WL
Sbjct: 794 GEFTVVNEYLVRDLKALGLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWL 853

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST+
Sbjct: 854 VEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMGATHAEKSTV 913

Query: 917 KG-------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           K             +A      +S+  +  +      D  CE CQ
Sbjct: 914 KAGSMNAVSNGAHGSASEPAAVSSNEPATDVKFCAIDDPSCEACQ 958


>gi|170699975|ref|ZP_02891002.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria IOP40-10]
 gi|170135123|gb|EDT03424.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria IOP40-10]
          Length = 999

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/997 (55%), Positives = 686/997 (68%), Gaps = 58/997 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   R       +    A     ++D+G     +   L  ++  AC+GL   V+ + 
Sbjct: 131 REKRHLERQHAGEEAAAGGEASAGINVVDNGVTRPLDMNALRELIVSACAGLGAAVNPEP 190

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 191 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGLQ 
Sbjct: 245 EEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 305 LYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 365 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI
Sbjct: 485 TANWIPDLFMKRVMEGTDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 544

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604

Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 605 NLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRP 664

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GSL
Sbjct: 665 VGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 724

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+N
Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATISN 784

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL
Sbjct: 845 DRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 904

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV-------------------------- 928
            GLKTTYYLR+ +AT VEKST+    G LNAVP                           
Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGGSSSGGAQGAAGGFGAAGGDA 962

Query: 929 -----TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                    +          CT         ECE CQ
Sbjct: 963 SSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999


>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large subunit [Herbaspirillum seropedicae
           SmR1]
 gi|300072506|gb|ADJ61905.1| ribonucleoside reductase (large chain) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score =  980 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/980 (56%), Positives = 695/980 (70%), Gaps = 47/980 (4%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
            A           +   ++I+RNG V  F+PSKIS A+ KAF+AV G   + S RV++++
Sbjct: 24  SAESQAVASQTAGLGEYRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMV 83

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           + LT   V+ L++   +    HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q
Sbjct: 84  EQLTTNVVSALVRRQPTGGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERAQQ 143

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYD 191
             +     +AP+L +  +DG     +   +  ++  AC GL++ V  + +L+ET KN+YD
Sbjct: 144 GAATKTEVVAPQLHVT-EDGQSRPLDINEVRSLIAAACVGLEEHVDGEAILAETVKNLYD 202

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G+   +L  + I ++R L+EK+P Y++VT+R L+  +R+EV        ++    +    
Sbjct: 203 GVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTIRKEVFG------KEVAQADAPAE 256

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           Y EYF +Y+++G++A LL   +  FDL  LA  LK ERD  F Y+GLQ LYDRYFLHI G
Sbjct: 257 YLEYFPQYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFGYIGLQTLYDRYFLHIGG 316

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +RIEMPQAF+MRVAMGLAL E ++E RA+EFY+LLSSF FM STPTLFNSGT+  QLSSC
Sbjct: 317 TRIEMPQAFYMRVAMGLALNEIDRETRAIEFYDLLSSFDFMSSTPTLFNSGTQRSQLSSC 376

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +LTTV DDL GI+ A++ENA+LAK++GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV 
Sbjct: 377 YLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVV 436

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMK
Sbjct: 437 NDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMK 496

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV +   WTLFSP +  DLHD +G+ FE AY  YE +A RGE+K+F+K+ A  LWRKML+
Sbjct: 497 RVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELKLFKKVQANDLWRKMLS 556

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL AH 
Sbjct: 557 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLPAHL 616

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            N + D+ KL  TIRTA+R+LDNVIDIN + ++KA+ SN  HR +G+G+MGFQ  LH+  
Sbjct: 617 VNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKR 676

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PYAS +AVE AD SME + ++A  AS ELA+ERG Y+S++GSLWD+G+ P DS+ LLA+
Sbjct: 677 VPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQ 736

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   L  + T  L W  L+ R+   GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLY
Sbjct: 737 ERGGYLETDSTETLDWAALRARIAEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLY 796

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSN+SG+FT +N +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE
Sbjct: 797 VKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFE 856

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DP WL+E+ASRRQKWIDQAQSLN+Y+   SGK+LD  Y+ AWL GLKTTYYLR+  AT 
Sbjct: 857 VDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATH 916

Query: 911 VEKSTLKGVDGKLNAVPVTD------------------------------PNSSTHSLGI 940
            EKST +   G LNAV V                                PN        
Sbjct: 917 TEKSTSRA--GALNAVAVDGGAGAMASASGTAVPAAPIASAATASAAYVMPNPGAAIEAD 974

Query: 941 PSSCTSDT------ECEVCQ 954
              CT         ECE CQ
Sbjct: 975 GPVCTMRPGDAGFEECEACQ 994


>gi|209521090|ref|ZP_03269820.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp.
            H160]
 gi|209498473|gb|EDZ98598.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp.
            H160]
          Length = 1003

 Score =  980 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/1000 (56%), Positives = 696/1000 (69%), Gaps = 68/1000 (6%)

Query: 6    DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              ++G +   P  +Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21   GQSQGAQGLAPQASY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66   IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
             RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75   ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126  SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
            +  RA   H  ++A   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135  NQARAHDEH--AEAASTPGLNVT-DNGITRPLDMAALRSIIESACANLGDAVSAEPIVAE 191

Query: 185  TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
            T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 192  TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 245

Query: 245  HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              EM   Y EYF ++I+ G+ A LL + +  FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 246  QAEMGERYAEYFPQFIKRGIGAGLLDDKLQQFDLKRLGAALDANRDLQFGYLGLQTLYDR 305

Query: 305  YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT 
Sbjct: 306  YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNILSSFDFMSSTPTLFNSGTH 365

Query: 365  HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
              QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 366  RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 425

Query: 425  IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
            +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 426  VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 485

Query: 485  IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
            IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K+ A  
Sbjct: 486  IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKLPAAQ 545

Query: 545  LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
            LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 546  LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 605

Query: 605  INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +GLG
Sbjct: 606  VNLVAHLKEQADGTLALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLG 665

Query: 660  LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            +MGFQ  LH+L  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GSLWD+G
Sbjct: 666  IMGFQDCLHMLRTPYASQEAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRG 725

Query: 720  VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            + P DS+ LLAE R   + ++ +  + W  L+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 726  ILPQDSVALLAEARGGYVEVDSSESMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGV 785

Query: 779  SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            S  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 786  SACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 845

Query: 839  DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
             DL+ I+ATAFE+DP+WL+ESASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLK
Sbjct: 846  ADLRAIYATAFEVDPVWLVESASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLK 905

Query: 899  TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--------------------------- 931
            TTYYLR+ +AT VEKST+    G LNAV                                
Sbjct: 906  TTYYLRTMAATHVEKSTV--AHGALNAVSSGHDGSGGAGGAAGGFGVGGGAAGGLGGGFQ 963

Query: 932  -----------NSSTHSLGIPSSCTSDT------ECEVCQ 954
                                   C          ECE CQ
Sbjct: 964  AAAAAAPTAAVAVEAAPEADGPVCMMRPGDPGFDECEACQ 1003


>gi|326315614|ref|YP_004233286.1| ribonucleoside-diphosphate reductase subunit alpha [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372450|gb|ADX44719.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 983

 Score =  980 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/988 (54%), Positives = 681/988 (68%), Gaps = 43/988 (4%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPE--KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           + PS      D+        P      +   Q+I+RNG V  F+P KI+ A+MKAF+AV 
Sbjct: 5   LSPSSATTAPDQTPTAQGTEPAAGGHPLSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVH 64

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G   + S  V++ +  LT+  V  L++        HIED+QD VE SLM+ GHH++ R Y
Sbjct: 65  GTQGAASASVRETVDTLTQSVVRALMRSRPGGGTFHIEDVQDNVELSLMRGGHHEVARAY 124

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVS 177
           VLYRE R+  RA Q H +   P  P L ++ D+G  +  +  RL  +++ AC+ L QDV 
Sbjct: 125 VLYRERRTQERAHQQHDRQPVPSTPVLHVI-DNGQRVPLDEARLRGLIDSACANLGQDVH 183

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
           +  +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL    
Sbjct: 184 AAPIVAETLRNLYDGVPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQ-- 241

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
                    +M   Y  YF ++I++GV   LL   ++ +DL  L   L   RD  F+YLG
Sbjct: 242 ----DVVPADMGPAYAAYFPQFIQKGVDNELLDPRLLQYDLARLGAALDAGRDQQFDYLG 297

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           LQ LYDRYFLH+  +RIE+PQ FFMRVAMGLAL E ++E RA+EFY +LSSF FM STPT
Sbjct: 298 LQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDREARAIEFYEVLSSFDFMSSTPT 357

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GT
Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH
Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK  
Sbjct: 478 DMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFGADFEKAYVAYEEKAARGEIKPS 537

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R + A  LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ET
Sbjct: 538 RTLQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDAET 597

Query: 598 AVCNLGSINLLAHFANNQF----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           AVCNLGS+NL+ H  +       D+ KL  TI TA+R+LDNVIDIN + +EKA+ SN  H
Sbjct: 598 AVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRMLDNVIDINYYAVEKARNSNMRH 657

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLGLM FQ +L+ L IPYAS  AVE AD SME I ++A  AS ELAQERG YSS+ G
Sbjct: 658 RPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAICYYAYWASTELAQERGKYSSYPG 717

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ PID++ LL + R   + ++R + L WD L++++   GMRNSNC+AIAPTATI
Sbjct: 718 SLWDRGILPIDTLDLLEKARGGYVEVDRATSLDWDALRQKIARDGMRNSNCVAIAPTATI 777

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GV  SI+PS+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+  GS+ 
Sbjct: 778 SNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRDLKRLGLWDDVMVMDLKHFKGSLH 837

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+R+P D+K +++TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ A
Sbjct: 838 PIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDETYKLA 897

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--------------- 937
           W+ GLKTTYYLR++SAT VE ST+     +LNAV      +   +               
Sbjct: 898 WVRGLKTTYYLRTQSATHVEMSTVNTR--QLNAVSSGSDGAMQAAGSGTARPGALDAAAA 955

Query: 938 -----------LGIPSSCTSDTECEVCQ 954
                        +      D  CE CQ
Sbjct: 956 AAQSQAAALPATDVKFCAIDDPTCEACQ 983


>gi|330815477|ref|YP_004359182.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           gladioli BSR3]
 gi|327367870|gb|AEA59226.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           gladioli BSR3]
          Length = 993

 Score =  980 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/992 (55%), Positives = 691/992 (69%), Gaps = 54/992 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P    ++G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGTASQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   RA           +  L +    G     + K L  +V  AC GL   V+   
Sbjct: 131 REKRHLERAHSDAPVETPDGSSGLTVTDK-GVSRPLDMKALHGLVAAACEGLGSAVNPDP 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 190 IVAETVKNLYDGVPLSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++    EMQ  Y EYF ++++ GV+A LL + ++ FDLV L   L   RD  F YLGLQ 
Sbjct: 244 EEVAQGEMQARYAEYFPQFLKRGVEAELLDDKLLQFDLVRLGEALDASRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+ G+RIEMPQAF+MRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHVEGTRIEMPQAFYMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 364 SGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGE+K+F+KI
Sbjct: 484 TANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYLGYEEKVARGELKLFKKI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 544 PAAQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDSEIAVC 603

Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH A         D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 604 NLGSVNLVAHLAKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  P++S  AVE AD SME + ++A  AS ELA+ERG YSS+ GSL
Sbjct: 664 VGLGIMGFQDCLHLLRTPFSSDTAVEFADRSMEAVCYYAYWASTELAEERGRYSSYTGSL 723

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI+N
Sbjct: 724 WDRGILPQDTLKLLEEARGGYVEVDMSESLDWTSLRGRISVHGMRNSNCIAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNL+VKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 784 IIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+++   SGKKLD IY+ AW+
Sbjct: 844 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIFMAGASGKKLDEIYKLAWV 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN---------------------- 932
            GLKTTYYLR+ +AT VEKST+    G LNAVP +                         
Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSSGGMGGGSAGGAQGAGSFGAAGGAAP 961

Query: 933 ----SSTHSLGIPSSCTSDT------ECEVCQ 954
               S+         CT         ECE CQ
Sbjct: 962 TGALSAAPIEADGPVCTMRPGDPGFEECEACQ 993


>gi|323527396|ref|YP_004229549.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
           sp. CCGE1001]
 gi|323384398|gb|ADX56489.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1001]
          Length = 1006

 Score =  980 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/928 (59%), Positives = 689/928 (74%), Gaps = 25/928 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H +  A   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 TQAR---GHDEQAAASTPGLSVT-DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIATYGMRNSNCIAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           TTYYLR+ +AT VEKST+    G LNAV
Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNAV 930


>gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate reductase subunit alpha [Herminiimonas
           arsenicoxydans]
 gi|133739836|emb|CAL62887.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Herminiimonas arsenicoxydans]
          Length = 966

 Score =  980 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/964 (57%), Positives = 690/964 (71%), Gaps = 21/964 (2%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++  N        S        +   ++++RNG V  F+PSKIS A+ KAF+AV G   
Sbjct: 12  PTEISNIAPLAVAASTPSVNSAALGDYRILRRNGAVVGFEPSKISIAVTKAFLAVNGGQG 71

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT   V  L++   +    HIEDIQDQVE +LM+SG H + R YVLYR
Sbjct: 72  AASARVRELVEQLTTNVVNALMRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 131

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
            +R + RA Q  +K       +L +  ++G     +  ++  ++  AC GL+  V +  +
Sbjct: 132 FKRMEERAQQQAAKPVVETEHQLHVT-ENGQRRPLDMNQVRDLITAACIGLEKHVDADAI 190

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+YDG+   +L  + I ++R L+EK+P Y+ VTAR L+  +R+EV        +
Sbjct: 191 LRETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKEVFG------R 244

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +         Y  YF  +I++G+ A LL   + +FDL  LA+ LK ERD  F YLGLQ L
Sbjct: 245 EVAQANAPAEYLVYFAEFIKKGIAAELLDAKLGEFDLKKLADALKPERDLQFGYLGLQTL 304

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI   RIEMPQAF+MRVAMGLAL E  +E+RA+EFYNLLSSF FM STPTLFNS
Sbjct: 305 YDRYFLHIADQRIEMPQAFYMRVAMGLALNEANREERAIEFYNLLSSFDFMSSTPTLFNS 364

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT+  QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+S
Sbjct: 365 GTQRSQLSSCYLTTVADDLGGIYDAIKENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRS 424

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT
Sbjct: 425 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNT 484

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP +  DLHD  GK FE AY  YE +A RGE+K+F+KI 
Sbjct: 485 ANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEEAYTGYEAKAARGELKLFKKIQ 544

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 545 ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCN 604

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           LGS+N+ AH  + + D+ KL  TIRTA+R+LDNVIDIN + + KA+ SN  HR +G+G+M
Sbjct: 605 LGSVNMPAHMKDGKLDHVKLQKTIRTAMRMLDNVIDINYYAVNKARDSNLRHRPVGMGIM 664

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           GFQ  LH++ IPYAS +AV+ AD SME + ++A  AS ELA+ERG YSS+KGSLWD+G+ 
Sbjct: 665 GFQDCLHMMRIPYASNDAVQFADNSMEAVCYYAYYASTELAEERGRYSSYKGSLWDRGIL 724

Query: 722 PIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           P DS+ LLA+ R    L  + +    W  L+ R+K  GMRNSNC+AIAPTATI+NI GVS
Sbjct: 725 PQDSLKLLADERGAKYLEADYSETFDWTPLRARIKEFGMRNSNCVAIAPTATISNIIGVS 784

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P+YQNLYVKSN+SG+FT +N +LV +LK R LWDE MISDLKY DGS+  I+RIP 
Sbjct: 785 ACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQ 844

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKT
Sbjct: 845 DLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKT 904

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSCTSDT------EC 950
           TYYLR+  AT  EKST K   G LNAV         + + +     +C          EC
Sbjct: 905 TYYLRTMGATHTEKSTSK--TGALNAVDSGGGSSTAAQSAAETDGPACILRPGDAGFEEC 962

Query: 951 EVCQ 954
           E CQ
Sbjct: 963 EACQ 966


>gi|187930115|ref|YP_001900602.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           pickettii 12J]
 gi|187727005|gb|ACD28170.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12J]
          Length = 994

 Score =  980 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/993 (56%), Positives = 696/993 (70%), Gaps = 52/993 (5%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           +PS+   + G     P  A      +   ++I+RNG V SF+PSKI+ A+ KAF+AV G 
Sbjct: 14  NPSQFAQSAGGTAVAPGTASGV--NLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
             + S RV++++   T+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVL
Sbjct: 72  QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           YRE R+  RA    +    P    L +  D G     +   L  ++  AC GL + V  +
Sbjct: 132 YRERRAQERAQAGET-QQQPAFIGLNVT-DGGITRPLDMAALRNVIVSACEGLGEAVDPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +L ET KN+Y+G+  + +  + I +SRTLIEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y +YF ++I+ G+ A LL + +  FDL  L   L   RDF F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF
Sbjct: 304 TLYDRYFLHISETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AV
Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D++KL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G+MGFQ ALH+L +PYAS  AV+ AD SME + ++A  AS ELA+ERG YSS+KGS
Sbjct: 664 PVGMGIMGFQDALHVLRVPYASDAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P DS+ LLAE R   L  + +S + WD L+ R+K  GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  
Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ ++ATAFE++P+WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW
Sbjct: 844 IDRIPQDLRDLYATAFEVEPLWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP---------------------- 931
           L GLKTTYYLR+  AT VEKST+    G LNAV                           
Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDIGGVSAAGASGVTSAAPASALD 961

Query: 932 ----NSSTHSLGIPSSCTSDT------ECEVCQ 954
                +        + CT         ECE CQ
Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994


>gi|293603287|ref|ZP_06685716.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818322|gb|EFF77374.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 976

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 531/982 (54%), Positives = 685/982 (69%), Gaps = 37/982 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
            +   +     A P      P      +     +I+RNG V  F+PSKI+ A+ KAF+AV
Sbjct: 2   QTTIASVTRPSAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAV 61

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            G   + S RV+++++NLT Q V  L+++  +    HIEDIQDQVE +LM+SG H + R 
Sbjct: 62  NGGQGAASARVRELVENLTSQAVNALVRNRPNGGTFHIEDIQDQVELALMRSGEHDVARA 121

Query: 118 YVLYREERSDVRA-----AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
           YVLYRE+R+  RA           + AP    L +    G     +   L   +  A  G
Sbjct: 122 YVLYREKRTQERAAAAAAEGQEKSAAAPAEHVLNVTDA-GVRRPLDLAELRATIVAAGEG 180

Query: 173 LQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
           L + + S+ +L ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+E
Sbjct: 181 LAEFIDSEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKE 240

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
           VL       ++ +   M   Y EYF  +I  G++  LL   + ++DL  L   L  +RD 
Sbjct: 241 VLG------EEVSQDGMVARYAEYFPTFIARGIEGGLLSPELANYDLTRLGKALNAKRDL 294

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF F
Sbjct: 295 QFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALREADRETRAIEFYEILSSFDF 354

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           M STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L 
Sbjct: 355 MSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALR 414

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD
Sbjct: 415 SHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGD 474

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +RRRTHDMNTANWIPDLFMKRV +   WTLFSP +  DLHD YG+ FE AY  YE++   
Sbjct: 475 ERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGRAFEEAYIGYEKRVAS 534

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE+K+++K+ A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN
Sbjct: 535 GELKLYKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 594

Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           ++  E AVCNLGS+NL+AH         + D DK+  T+  A+R+LDNVIDIN + +EKA
Sbjct: 595 TNESEIAVCNLGSVNLVAHMKPAAGGGFELDLDKIKRTVSIAMRMLDNVIDINYYAVEKA 654

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + SN  HR +G+G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS  LA+ERG
Sbjct: 655 RNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYFASSLLAEERG 714

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            Y S++GSLW +G+ P D++ +L + R   + ++ +S L WD L+ R+K  GMRNSNC+A
Sbjct: 715 RYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVDESSTLDWDTLRARIKQHGMRNSNCVA 774

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLK
Sbjct: 775 IAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLK 834

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
           Y DGS+  I+R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKL
Sbjct: 835 YFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKL 894

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-------GKLNAVPVTDPNSSTHSL 938
           D  Y+ AW  GLKTTYYLR+  ATS EKST +G +       G+  A  V          
Sbjct: 895 DDTYKLAWTRGLKTTYYLRTLGATSAEKSTGRGGELNAVTAGGQSTAAAVGAAPVLPEPE 954

Query: 939 GIPSSCTSDT------ECEVCQ 954
            + + CT         ECE CQ
Sbjct: 955 VLGAVCTMRPGDPGFEECEACQ 976


>gi|311103858|ref|YP_003976711.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans A8]
 gi|310758547|gb|ADP13996.1| ribonucleoside-diphosphate reductase, alpha subunit [Achromobacter
           xylosoxidans A8]
          Length = 976

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/984 (54%), Positives = 692/984 (70%), Gaps = 41/984 (4%)

Query: 3   PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
            +   +     A P      P      +     +I+RNG V  F+P+KI+ A+ KAF+AV
Sbjct: 2   QTTIASVTRPTAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPNKIAIAMTKAFLAV 61

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            G   + S RV+++++NLT Q V  L+++  +    HIEDIQDQVE +LM+SG H + R 
Sbjct: 62  NGGQGAASARVRELVENLTGQAVNALVRNRPNGGTFHIEDIQDQVELALMRSGEHDVARA 121

Query: 118 YVLYREERSDVRAAQS-----HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
           YVLYRE+R+  RAA +       K+ AP    L +    G     +   L   +E A  G
Sbjct: 122 YVLYREKRTQERAAAAAAADTQEKAAAPQEHVLNVTDA-GVRRPLDLAELRATIEAAGEG 180

Query: 173 LQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
           L + + ++ +L ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+E
Sbjct: 181 LAEFIDTEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKE 240

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
           VL       ++ +   M   Y EYF  +I  G++  LL   +  +DL  L + L  +RD 
Sbjct: 241 VLG------EEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLASYDLTKLGHALNAKRDL 294

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF F
Sbjct: 295 QFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALREADRETRAIEFYEILSSFDF 354

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           M STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L 
Sbjct: 355 MSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALR 414

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD
Sbjct: 415 SHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGD 474

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +RRRTHDMNTANWIPDLFMKRV +   WTLFSP +  DLHD YG+ FE AY  YE +   
Sbjct: 475 ERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGRAFEEAYVGYEARVAS 534

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE+K+F+K+ A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN
Sbjct: 535 GELKLFKKMPALNLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 594

Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           ++  E AVCNLGS+NL+AH         + D+DK+  T+  A+R+LDNVIDIN + ++KA
Sbjct: 595 TNESEIAVCNLGSVNLVAHMKPAAGGGFELDHDKIKRTVSIAMRMLDNVIDINYYAVDKA 654

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + SN  HR +G+G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS  LA+ERG
Sbjct: 655 RNSNARHRPVGMGIMGFQDCLQMMRVPYASQSAVEFADRSMEAVCYHAYWASSLLAEERG 714

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            Y S++GSLW +G+ P D++ +L + R   + ++ +S L WD L+ R+K  GMRNSNC+A
Sbjct: 715 RYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVDESSTLDWDTLRARIKKHGMRNSNCIA 774

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLK
Sbjct: 775 IAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLK 834

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
           Y DGS+  I+R+P +L+ ++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKL
Sbjct: 835 YFDGSLSRIDRVPSELRDLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKL 894

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---------TH 936
           D  Y+ AW  GLKTTYYLR+  ATS EKST +G  G+LNAV     ++S           
Sbjct: 895 DDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGGQSTSAAVAAAPVLPE 952

Query: 937 SLGIPSSCTSDT------ECEVCQ 954
              + + CT         ECE CQ
Sbjct: 953 PEVLGAVCTMRPGDPGFEECEACQ 976


>gi|167618619|ref|ZP_02387250.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis Bt4]
          Length = 953

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/934 (58%), Positives = 692/934 (74%), Gaps = 23/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALASQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  ++P    + +  D+G + + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+++K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|78065155|ref|YP_367924.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           sp. 383]
 gi|77965900|gb|ABB07280.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
          Length = 998

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/997 (55%), Positives = 688/997 (69%), Gaps = 59/997 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178
           RE+R   R       + A       + ++ D+G     +   L  +V  AC GL   V+ 
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASTGINVV-DNGVTRPLDLNALRALVVSACDGLGAAVNP 189

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VT+R LL  +RRE+L     
Sbjct: 190 DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREILG---- 245

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 246 --EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+
Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFK 543

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 544 KIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDSEIA 603

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 604 VCNLGSVNLVAHLVKQADGSFALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKH 663

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LHLL  PYAS  AV  AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVAFADRSMEAVCYYAYHASTELAEERGRYSSYRG 723

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI
Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTSLRSRIATHGMRNSNCVAIAPTATI 783

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP------------------------- 927
           WL GLKTTYYLR+ +AT VEKST+    G LNAVP                         
Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSSGGAQGAAGGFGAAGGAAS 961

Query: 928 ----VTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
               V    +          CT         ECE CQ
Sbjct: 962 SSGAVDAAPALAPVEADGPVCTMRPGDPGFDECEACQ 998


>gi|167580511|ref|ZP_02373385.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis TXDOH]
          Length = 950

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/934 (58%), Positives = 692/934 (74%), Gaps = 23/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALASQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  ++P    + +  D+G + + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+++K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  P+AS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPFASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|332526549|ref|ZP_08402661.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
 gi|332110817|gb|EGJ10994.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
          Length = 950

 Score =  978 bits (2529), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/935 (58%), Positives = 688/935 (73%), Gaps = 17/935 (1%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           + G Q+I+RNG V +F+P+KI+ A+MKAF+AV G   + S  V++ +  LTE  V  L++
Sbjct: 27  VSGYQIIRRNGSVVAFEPNKIAVALMKAFLAVHGAQGAASASVRETVDQLTEGVVRALVR 86

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                   HIED+QD VE  LM+ GHH++ R YVLYRE R+  R+ Q+ +   A     L
Sbjct: 87  SRPGGGTFHIEDVQDHVELGLMRGGHHEVARAYVLYRERRAQERSRQAAAPQPAAPE--L 144

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
            ++ D G  +  +   L  +VE+AC+GL +DV ++ +L+ET +N+YDG+   ++  A I 
Sbjct: 145 HVV-DGGQRLPLDLDALRSLVEQACAGLGEDVRAEPILAETRRNLYDGVPLDEVYKAAIL 203

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +SRTLIEK+P Y + TAR LL  +RRE+L              M   Y EYF  Y+ +GV
Sbjct: 204 ASRTLIEKDPAYTRATARLLLHTIRREILGA------DVRPEAMAARYAEYFPAYVRQGV 257

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +A LL E +  FDL  L   LK ERD  F+YLGLQ LYDRYFLH++G RIE+PQAFFMRV
Sbjct: 258 QAELLDEELQRFDLARLGAALKPERDLQFDYLGLQTLYDRYFLHVDGRRIELPQAFFMRV 317

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E ++E RA+EFY++LSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+
Sbjct: 318 AMGLALNEIDREARAIEFYDVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 377

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL+ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 378 EALKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 437

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLFSP
Sbjct: 438 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSP 497

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               DLHD +G  FE AY  YER+ADRGEI+ F+++ A  LWRKMLTMLFETGHPWITFK
Sbjct: 498 SSCPDLHDKFGAAFEQAYVAYERKADRGEIRPFKRLPARDLWRKMLTMLFETGHPWITFK 557

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           D CN+RSPQQHVGVVHSSNLCTEITLN+S+ E AVCNLGSINL  H A    D  KL  T
Sbjct: 558 DACNLRSPQQHVGVVHSSNLCTEITLNTSAGEIAVCNLGSINLAQHVAGGGIDQAKLKRT 617

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TA+R+LDNVIDIN + ++KA+ +N  HR +GLGLMGFQ  L+ L +PYAS  AVE AD
Sbjct: 618 VSTAMRMLDNVIDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASDAAVEFAD 677

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSR 743
            SME + +HA  AS ELA+ERG YSS++GSLWD+GV P D++ LLA  R   + ++R+  
Sbjct: 678 RSMEALCYHAYWASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAERGGHVEVDRSET 737

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L W  L+ R+   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTVVN
Sbjct: 738 LDWAALRARIAVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVN 797

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LV +LK+  LWD+ M+ DLK+ DGS+  ++R+PD+LK+++ATAFE+D  WL+E+A+RR
Sbjct: 798 EYLVRDLKRLGLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLVEAAARR 857

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLN+Y+   SGKKLD IY+ AW  GLKTTYYLR+ SAT  EKST+    G +
Sbjct: 858 QKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKTTYYLRTMSATHAEKSTV--APGAM 915

Query: 924 NAVP----VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           NAVP    +    ++  +  +      + +CE CQ
Sbjct: 916 NAVPRHGGLEAAAAAEPASDVRFCSIDNPDCEACQ 950


>gi|74317994|ref|YP_315734.1| ribonucleotide-diphosphate reductase subunit alpha [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057489|gb|AAZ97929.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 974

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/968 (56%), Positives = 707/968 (73%), Gaps = 30/968 (3%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
             V      +  + A     +    ++I+RNG V  F P+KI+ A+ KAF+AV+G  A+ 
Sbjct: 19  SAVPVAIPPSDAADAPAIDARYADYKIIRRNGAVVGFAPNKIAVAVTKAFIAVQGGQAAA 78

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R++++++ +T Q    LL+ N +    HIED+QDQVE +LM+SG H++ R YVLYRE+
Sbjct: 79  SARIRELVEAITSQVTAALLRRNPAGGTFHIEDVQDQVELALMRSGEHEVARAYVLYREK 138

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLS 183
           R+  RAAQ  +        +L ++ +DG     ++ RL  ++ +ACS L + V ++ ++ 
Sbjct: 139 RAQERAAQKAAGVPEV---QLHVI-EDGVRKPLDTARLAGLLADACSDLGESVKAEPIMH 194

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
              +++YDG+  +++E AL+ ++R++IE++P Y+ VTAR LL  +R EVL       +  
Sbjct: 195 TVLRDLYDGVPMAEVEKALVLAARSMIEQDPAYSLVTARLLLNSIRHEVLG------EAV 248

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           T  +M   Y EYF  +I++G+ A LL E +  FDL  LA  L   RD+ F YLGLQ LYD
Sbjct: 249 TQAQMSERYAEYFPAFIKKGIAAELLDEKLGQFDLARLARVLDAGRDYQFGYLGLQTLYD 308

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYFLHI  +RIE+PQAFFMRVAMGLA+ E ++E RA+EFY +LSSF FM STPTLFNSGT
Sbjct: 309 RYFLHIEENRIELPQAFFMRVAMGLAINEIDRESRAIEFYQVLSSFDFMSSTPTLFNSGT 368

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           RH QLSSC+LTTV DDL GI+ A++ENAML KY+GGLGNDWTPVR +GA I GTNGKSQG
Sbjct: 369 RHSQLSSCYLTTVTDDLDGIYQAIKENAMLQKYAGGLGNDWTPVRAMGARIKGTNGKSQG 428

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTAN
Sbjct: 429 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAN 488

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFM+RV +   WTLFSP++V DLHDLYG++F  AY  YER+ADRGE+K++++I A+
Sbjct: 489 WIPDLFMQRVMEGGDWTLFSPNDVPDLHDLYGRKFAEAYTEYERKADRGELKLYKRIPAL 548

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLG
Sbjct: 549 QLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDHEVAVCNLG 608

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL+ H  + + D DKL +TI TA+R+LDNV+D+N + + KA+ SN  HR +GLG+MGF
Sbjct: 609 SVNLVNHLKDGKLDLDKLKNTIHTAMRMLDNVVDVNYYAVGKARNSNLKHRPVGLGIMGF 668

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL  L + YAS +AVE AD SME ++++A  AS ELAQERG YSS++GSLW +G+ P 
Sbjct: 669 QDALQELRVAYASNDAVEFADRSMEAVAYYAYWASTELAQERGRYSSYEGSLWSKGILPH 728

Query: 724 DSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           DS  LL E R   L ++ ++ L WD L++R+   GMRNSNC+AIAPTATIANI GVS SI
Sbjct: 729 DSNRLLLEERGGYLEVDSSATLDWDSLRQRIAQYGMRNSNCLAIAPTATIANIVGVSASI 788

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNLYVKSN+SG+FTV N +LV +LK+  +WDE M++D+KY DGS+  I+RIP +L+
Sbjct: 789 EPTYQNLYVKSNLSGEFTVANKYLVADLKKLGMWDEVMVADIKYFDGSLARIDRIPAELR 848

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLKTTYY
Sbjct: 849 ALYATAFEMEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDIYKLAWLRGLKTTYY 908

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPV----------TDPNSSTHSLGIPSSCTSDT---- 948
           LR+  ATS EKST KG  G+LNAV                +          CT       
Sbjct: 909 LRTLGATSAEKSTGKG--GELNAVSAHVGGGMSAMDAAAANLPVPEIEGKVCTMRPGDPG 966

Query: 949 --ECEVCQ 954
             ECE CQ
Sbjct: 967 FEECEACQ 974


>gi|172059583|ref|YP_001807235.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ambifaria MC40-6]
 gi|171992100|gb|ACB63019.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria MC40-6]
          Length = 999

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/998 (55%), Positives = 689/998 (69%), Gaps = 60/998 (6%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRA--AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178
           RE+R   R    +  + +    +  + ++ D+G     +   L  ++  AC+GL   V+ 
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASAGINVV-DNGVTRPLDMNALRELIVSACAGLGAAVNP 189

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 190 EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 246 --EEVLQAEMATRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+
Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFK 543

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH           D DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDQDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI
Sbjct: 724 SLWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATI 783

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928
           WL GLKTTYYLR+ +AT VEKST+    G LNAVP                         
Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGSSSGGAQGAAGGFGAAGGD 961

Query: 929 ------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                     +          CT         ECE CQ
Sbjct: 962 ASSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999


>gi|187925408|ref|YP_001897050.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           phytofirmans PsJN]
 gi|187716602|gb|ACD17826.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           phytofirmans PsJN]
          Length = 1001

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/929 (59%), Positives = 687/929 (73%), Gaps = 25/929 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H        P L +  D+G     +   L  I+E ACS L D VS+  +++E
Sbjct: 135 TQAR---GHDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILK------EEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHDL+G +FE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDLFGADFEKAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLA+ R   + ++ +  + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLADARGGYVEVDSSESMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           TTYYLR+ +AT VEKST+    G LNAV 
Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNAVS 931


>gi|115350551|ref|YP_772390.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           ambifaria AMMD]
 gi|115280539|gb|ABI86056.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           ambifaria AMMD]
          Length = 999

 Score =  978 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/998 (55%), Positives = 690/998 (69%), Gaps = 60/998 (6%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRA--AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178
           RE+R   R    +  + +    +  + ++ D+G     +   L  ++  +C+GL   V+ 
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASAGINVV-DNGVTRPLDMNALRELIVSSCAGLGAAVNP 189

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 190 EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             ++    EM   Y EYF ++++ GV A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 246 --EEVLQAEMTTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+
Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFK 543

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P D++ LL E R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTATI
Sbjct: 724 SLWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATI 783

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928
           WL GLKTTYYLR+ +AT VEKST+    G LNAVP                         
Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGSSSGGAQGAAGGFGAAGGD 961

Query: 929 ------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954
                     +          CT         ECE CQ
Sbjct: 962 ASSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999


>gi|330974388|gb|EGH74454.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 953

 Score =  978 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/956 (57%), Positives = 692/956 (72%), Gaps = 18/956 (1%)

Query: 3   PSKDVNKGDEDAFPS-------LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFM 55
            +    +      P        L+   P +   ++VIKRNG V  +   KI+ AI KAF+
Sbjct: 2   QTDTTRENSPTGAPQPSQTQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFL 58

Query: 56  AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKIT 115
           AVEG  A+ S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ 
Sbjct: 59  AVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVA 118

Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD 175
           R+YV+YR+ R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +
Sbjct: 119 RDYVIYRDSRAKERAVRTPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAE 177

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           V + ++ +ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L  
Sbjct: 178 VDADLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG- 236

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
                  ATHHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F Y
Sbjct: 237 FLGVADSATHHEMADLYAKALPAYVAAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTY 296

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           LGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M ST
Sbjct: 297 LGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSST 356

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I 
Sbjct: 357 PTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIK 416

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRR
Sbjct: 417 GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRR 476

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEI 534
           THDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+I
Sbjct: 477 THDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKI 536

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ 
Sbjct: 537 KLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNK 596

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +E AVCNLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR
Sbjct: 597 DEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHR 656

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GS
Sbjct: 657 PVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGS 716

Query: 715 LWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           LW +G+ P+DS  +L E R    ++++    L W  ++ RV+  G+RNSN MAIAPTATI
Sbjct: 717 LWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATI 775

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           ANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+DLKY+DGS+ 
Sbjct: 776 ANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQ 835

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR A
Sbjct: 836 QIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMA 895

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           W  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P    +  
Sbjct: 896 WYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAP 949


>gi|300690380|ref|YP_003751375.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum PSI07]
 gi|299077440|emb|CBJ50066.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum PSI07]
          Length = 987

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/986 (55%), Positives = 687/986 (69%), Gaps = 44/986 (4%)

Query: 5   KDVNKGDEDAFPSLAYPFPEK--IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
                    + P+              ++I+RNG V  F+PSKI+ A+ KAF+AV G   
Sbjct: 10  SGTANPAAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVLYR
Sbjct: 70  AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E R+  RA    ++   P    L +  D G     +   L  ++  AC+GL + V  + +
Sbjct: 130 ERRAQERAQAGETQQP-PAFIGLNVT-DGGITRPLDMAALRNLIVSACAGLGEAVDPEPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++VTAR LL  +RRE+L       +
Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQVTARILLHTIRREILG------E 241

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           + T  EM   Y +YF ++I+ G+ A LL E +  FDL  L   L   RD  F YLGLQ L
Sbjct: 242 EVTQAEMAARYADYFPQFIKRGINAGLLDEKLAQFDLAKLGAALDASRDLQFNYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           +DRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFNS
Sbjct: 302 FDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDRESRAIEFYQLLSSFDFMSSTPTLFNS 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS
Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +N  WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K+ 
Sbjct: 482 ANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGKAFETAYLGYEEKVARGEIKLFKKMP 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601

Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL+AH           D+DKL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 602 LGSVNLVAHLVTQADGSVALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPV 661

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGFQ ALH+L IPYAS  AV+ AD SME + ++A  AS ELA+ERG YS++KGSLW
Sbjct: 662 GLGIMGFQDALHVLRIPYASDAAVQFADNSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+G+ P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+NI
Sbjct: 722 DRGILPQDSLKLLAQERGGYLEADLSSSMDWDSLRARIQQYGMRNSNCVAIAPTATISNI 781

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+
Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL 
Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD---------------------GKLNAVPVTDPNSS 934
           GLKTTYYLR+  AT VEKST+                            +A+      + 
Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSRGTLNAVSSGSDVGSVSAAGASPVAPASALDAVAATAP 961

Query: 935 THSLGIPSSCTSDT------ECEVCQ 954
                  + CT         ECE CQ
Sbjct: 962 AMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|238026166|ref|YP_002910397.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           glumae BGR1]
 gi|237875360|gb|ACR27693.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia
           glumae BGR1]
          Length = 999

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/998 (55%), Positives = 695/998 (69%), Gaps = 60/998 (6%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P    ++G     P   +         +VI+RNG V +F+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGTASQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           RE+R   RA           A  + +    G     +   L  ++  AC GL   V+   
Sbjct: 131 REKRHLERAHSDAPADAPAGAAGINVTDA-GVTRPLDMGALRGLIASACEGLGSAVNPDP 189

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       
Sbjct: 190 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ +  EMQ  Y EYF ++++ GV+A LL + ++ FDLV L   L   RD  F YLGLQ 
Sbjct: 244 EEVSQGEMQARYAEYFPQFLKRGVEAELLDDKLLQFDLVRLGEALDAGRDLQFGYLGLQT 303

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFY++LSSF FM STPTLFN
Sbjct: 304 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYHVLSSFDFMSSTPTLFN 363

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK
Sbjct: 364 SGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 483

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGE+K+F+KI
Sbjct: 484 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYLGYEEKVARGELKLFKKI 543

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVC
Sbjct: 544 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDSEIAVC 603

Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 604 NLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 663

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LHLL  P++S  AVE AD SME + ++A  AS EL++ERG YSS++GSL
Sbjct: 664 VGLGIMGFQDCLHLLRTPFSSDAAVEFADRSMEAVCYYAYWASTELSEERGRYSSYRGSL 723

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +S L W  L++R+   GMRNSNC+AIAPTATI+N
Sbjct: 724 WDRGILPQDTLKLLEEARGGYVEVDMSSSLDWTSLRERISLHGMRNSNCIAIAPTATISN 783

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNL+VKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  I
Sbjct: 784 IIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+++   SGKKLD IY+ AW+
Sbjct: 844 DRIPSDLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIFMAGASGKKLDEIYKLAWV 903

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG--------------- 939
            GLKTTYYLR+ +AT VEKST+    G LNAVP  D  +   + G               
Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSGDGGAGGGAAGGAHGAAGGFGAAGGA 961

Query: 940 -----------------IPSSCTSDT------ECEVCQ 954
                                C          ECE CQ
Sbjct: 962 GSGVLNAAPAAEAEIAVDGPVCMMRPGDPGFEECEACQ 999


>gi|254253305|ref|ZP_04946623.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
 gi|124895914|gb|EAY69794.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
          Length = 997

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/996 (55%), Positives = 691/996 (69%), Gaps = 58/996 (5%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P      G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAEHGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++ ++ LT   V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVREQVEQLTRNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178
           RE+R   R       + A       + ++ D+G     +   L  ++  AC GL   V+ 
Sbjct: 131 REKRHLERQHAGEEAAAAGGEASSGINVV-DNGVTRPLDLNALRALIVSACDGLGAAVNP 189

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L     
Sbjct: 190 EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             ++    EM   Y EYF +++  GV+A LL + ++ FDL  L   L   RD  F YLGL
Sbjct: 246 --EEVVQSEMSTRYAEYFPQFLRRGVEAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL
Sbjct: 304 QTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTL 363

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN
Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD
Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+
Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEEKVARGEIKLFK 543

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           KI A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E A
Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  H
Sbjct: 604 VCNLGSVNLVAHLVKQPDGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++G
Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723

Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           SLWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+ T GMRNSNC+AIAPTATI
Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDMSETLDWAALRARIATHGMRNSNCVAIAPTATI 783

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + 
Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
            I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ A
Sbjct: 844 RIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLA 903

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--------------- 937
           WL G KTTYYLR+ +AT VEKST+    G LNAVP    +SS  +               
Sbjct: 904 WLRGKKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGGSSSGGAQGAAGGFGAAGGEAS 961

Query: 938 -------------LGIPSSCTSDT------ECEVCQ 954
                              CT         ECE CQ
Sbjct: 962 SGALNAAPALAPVEADGPVCTMRPGDPGFDECEACQ 997


>gi|73542625|ref|YP_297145.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha JMP134]
 gi|72120038|gb|AAZ62301.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
          Length = 979

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/952 (58%), Positives = 695/952 (73%), Gaps = 32/952 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +  ++I+RNG V +F+PSKI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++ 
Sbjct: 36  QDYKIIRRNGAVVAFEPSKINVAMTKAFLAVNGGQGAASARVREIVEQLTQNVVRALVRS 95

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             S   +HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA+ S           ++
Sbjct: 96  RPSGGAIHIEDVQDHVELALMRSGEHEVARSYVLYREKRAQERASASAQAVARVQESGIQ 155

Query: 147 IMMDD-GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
             + D G     +   L  +++ AC+GL + VS++ +L ET KN+Y+G+  + +  + I 
Sbjct: 156 FNVTDAGVTKPLDIVALHDLLDTACAGLGKAVSAEPILKETLKNLYEGVPMTQVYDSAIL 215

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++RTLIEK+P+Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G+
Sbjct: 216 AARTLIEKDPDYSQVTARILLHTIRKEILGA------EVTQAEMTTRYAEYFPKFIARGI 269

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
            A LL E +  FDL  L   L   RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRV
Sbjct: 270 AAELLDEKLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRV 329

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+
Sbjct: 330 AMGLALNEADREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 389

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 390 EALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 449

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP
Sbjct: 450 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSP 509

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               DLHD  GK FE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITFK
Sbjct: 510 STCPDLHDKVGKAFEQAYLGYEAKAASGELKLFKKVPAMQLWRKMLGMLFETGHPWITFK 569

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYD 619
           DPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+ 
Sbjct: 570 DPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLTKQADGSYVLDHA 629

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TIRTA+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  LH+L  PYAS  A
Sbjct: 630 KLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAA 689

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738
           V+ AD SME + ++A  AS ELA+ERG Y ++ GSLWD+G+ P DS+ LLAE R   L +
Sbjct: 690 VKFADTSMEAVCYYAYQASTELAEERGRYETYAGSLWDRGILPQDSLKLLAEERGGYLEV 749

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           + +S + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG+
Sbjct: 750 DHSSSMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGE 809

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FTVVN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+E
Sbjct: 810 FTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVE 869

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST+  
Sbjct: 870 AASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVSR 929

Query: 919 VDGKLNAVPVTDP----------NSSTHSLGIPSSCTSDT------ECEVCQ 954
             G LNAV               ++        + CT         ECE CQ
Sbjct: 930 --GSLNAVSSGSDGGSAMDAAAASAPAMPEAEGAVCTMRPGDPGFEECEACQ 979


>gi|83649536|ref|YP_437971.1| ribonucleotide-diphosphate reductase subunit alpha [Hahella
           chejuensis KCTC 2396]
 gi|83637579|gb|ABC33546.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC
           2396]
          Length = 953

 Score =  977 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/932 (57%), Positives = 679/932 (72%), Gaps = 6/932 (0%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
               +QVIKR G    FD  KI+ A+ KAF+AVEG+ AS S RV+D ++ L +  V RL 
Sbjct: 26  HNALLQVIKRTGQAAPFDDRKIAMAVTKAFLAVEGQSASGSPRVRDSVEKLVKDIVARLR 85

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + +     VHIE+IQD VE  LM+ G HK+ R YVLYREE +  RA  + S+      P 
Sbjct: 86  RRSPEGGSVHIEEIQDLVELGLMRGGFHKVARAYVLYREEHARQRAP-APSEQSGETHPD 144

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   DG+    N  RL  ++ +AC+ L  VS + VL    KN+Y+G+   D+  AL+ 
Sbjct: 145 INVKFADGSEAPLNMGRLRTVISDACADLDGVSEEKVLQGALKNLYNGVKHKDVNAALVM 204

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++R LIE+EPNY+ V AR LL+ LR E L+ +      AT  EM  LYP  F   +E  V
Sbjct: 205 AARPLIEEEPNYSYVCARLLLDGLREESLSYLNIAAS-ATEGEMAELYPTAFRAIVERCV 263

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +  LL   ++ FDL  L   LK ERD    YLGLQ LYDRYF+H   +R+E+PQAFFMRV
Sbjct: 264 EHELLSPELLKFDLERLGAALKPERDRQLTYLGLQTLYDRYFIHWRETRLELPQAFFMRV 323

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGL+++E +   RA+EFY+LLSSF +MCSTPTLFN+GT  PQLSSC+LTTVPDDL GI+
Sbjct: 324 AMGLSVQEDDPNARAIEFYDLLSSFDYMCSTPTLFNAGTNRPQLSSCYLTTVPDDLEGIY 383

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
           GA+++NA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 384 GAIKDNALLSKWAGGLGNDWTPVRSLGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 443

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMN+ANWIPDLFMKRV ++  WTLFSP
Sbjct: 444 KGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNSANWIPDLFMKRVFEDKEWTLFSP 503

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +  DLHDLYG  FE  Y +YE   + G I +F+K+ A  LWRKML+MLFETGHPW+TFK
Sbjct: 504 SDAPDLHDLYGSAFEARYTHYESLVESGAITLFKKVPAQNLWRKMLSMLFETGHPWVTFK 563

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+ H  N + D+D+L +T
Sbjct: 564 DPCNLRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLVNHIRNGEIDHDRLRNT 623

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TAVR+LDNVIDIN + + +A+ +N  HR +G+GLMGFQ AL+ L +PY+S EAV  AD
Sbjct: 624 VYTAVRMLDNVIDINYYAVPQARNANLRHRPVGMGLMGFQDALYKLGLPYSSVEAVRFAD 683

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTS 742
           +SME IS+ AI+AS  LA+ERG Y +++GSLWDQGV PIDS+  L + R      ++R  
Sbjct: 684 QSMELISYFAITASSNLAKERGRYETYEGSLWDQGVLPIDSLDRLEQERGAEFCTLDRGH 743

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            L W  +++ VK  GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTV+
Sbjct: 744 SLDWAPVRELVKKQGMRNSNVMAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVI 803

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV ELK RDLWD  M++DLKY DGS+  I+RIP+D+K++  TAFEIDP WL+E+ASR
Sbjct: 804 NPWLVQELKARDLWDSVMVNDLKYFDGSVAQIDRIPEDVKQLFLTAFEIDPRWLVEAASR 863

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWIDQ QSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  AT +EK  +     +
Sbjct: 864 RQKWIDQGQSLNLYMAEPSGKKLDNLYKLAWSRGLKTTYYLRSLGATQMEK--ISSGASQ 921

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +       ++             D +CE CQ
Sbjct: 922 SDNAKPDVDDTENQEPQPKFCSILDPDCEACQ 953


>gi|170695323|ref|ZP_02886469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           graminis C4D1M]
 gi|170139723|gb|EDT07905.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           graminis C4D1M]
          Length = 1001

 Score =  977 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/918 (59%), Positives = 685/918 (74%), Gaps = 23/918 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H +  A   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 TQAR---GHDEQVAGSTPGLTVT-DNGVSRPLDMAALRGIIESACANLGDAVSAEPIVAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K+ A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKVPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLA+ R   + ++ +  + W EL++R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLADARGGYVEVDSSESMDWTELRQRIATYGMRNSNCIAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTL 916
           TTYYLR+ +AT VEKST+
Sbjct: 905 TTYYLRTMAATHVEKSTV 922


>gi|222112112|ref|YP_002554376.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax
           ebreus TPSY]
 gi|221731556|gb|ACM34376.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           ebreus TPSY]
          Length = 974

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 539/968 (55%), Positives = 686/968 (70%), Gaps = 38/968 (3%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           A PS        +   Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++++ 
Sbjct: 18  ATPSATPTGAHPLMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT+  V  L++   +    HIED+QDQVE  LM+  HH++ R YVLYRE R+  RA + 
Sbjct: 78  QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192
                 P  P L +  D G  +  +  RL+ +VE AC+GL  DV +  +++ET +N+YDG
Sbjct: 138 EQL--LPQMPALYV-QDQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   ++  A I ++RTLIEK+P Y   TAR LL  + REVL       +      M   Y
Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPANMALAY 248

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E F ++I +GV   LL   +M+FDL  L + LK ERD  F+YLGLQ LYDRYFLH+  +
Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQ+FFMRVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+
Sbjct: 309 RIELPQSFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N
Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +   WTLFSP +V DLHDLYG+ FE AY  YE +A+ GE+ +F+++ AV LWRKML+M
Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  
Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +   D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ L I
Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS  AVE AD SME + ++A  AS +LAQERG YSS++GSLW QG+ P+DS+ LL + 
Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728

Query: 733 R-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL V
Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTV+N +LV +LKQ  LWD+ M+ DLK+  GS+  I+R+P  +K ++ATAFE+
Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT V
Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908

Query: 912 EKSTLKGVDGKLNAVPVTDPNSST-------------------------HSLGIPSSCTS 946
           E ST+     +LNAV     ++                            +  +      
Sbjct: 909 EMSTVNTR--QLNAVASGASDTGEGTMAPSSALNAAVAAAQAQAQAAAIPATDVKFCAID 966

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 967 DPGCEACQ 974


>gi|296160507|ref|ZP_06843323.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. Ch1-1]
 gi|295889256|gb|EFG69058.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. Ch1-1]
          Length = 1001

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/918 (59%), Positives = 681/918 (74%), Gaps = 23/918 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H        P L +  D+G     +   L  I+E ACS L D VS+  +++E
Sbjct: 135 TQAR---GHDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LS+F FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEKAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV+ AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTL 916
           TTYYLR+ +AT VEKST+
Sbjct: 905 TTYYLRTMAATHVEKSTV 922


>gi|317402621|gb|EFV83181.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans C54]
          Length = 976

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/984 (53%), Positives = 684/984 (69%), Gaps = 41/984 (4%)

Query: 3   PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
            +   +     A P      P      +     +I+RNG V  F+P KI+ A+ KAF+AV
Sbjct: 2   QTTIASVTRPSAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPGKIAIAMTKAFLAV 61

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            G   + S RV+++++ LT Q V  L+++       HIEDIQDQVE +LM+SG H + R 
Sbjct: 62  NGGQGAASARVRELVEQLTTQAVNALVRNRPGGGTFHIEDIQDQVELALMRSGQHDVARA 121

Query: 118 YVLYREERSDVRA-----AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
           YVLYRE+R+  RA              P    L +    G     +   L   +  A  G
Sbjct: 122 YVLYREKRTQERAAAAAAEGQQKVDAVPQENVLHVTDA-GVRRPLDIAELRATIVAAGEG 180

Query: 173 LQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
           L + + S+ +L ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+E
Sbjct: 181 LAEFIDSEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKE 240

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
           VL       ++ +   M   Y EYF  +I  G++  LL   +  +DL  L   L  +RD 
Sbjct: 241 VLG------EEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLASYDLTKLGKALNAKRDL 294

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+ET++E RA+EFY +LSSF F
Sbjct: 295 QFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRETDREARAIEFYEILSSFDF 354

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           M STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L 
Sbjct: 355 MSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALR 414

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD
Sbjct: 415 SHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGD 474

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +RRRTHDMNTANWIPDLFMKRV +   WTLFSP +  DLHD YGK FE AY  YE +   
Sbjct: 475 ERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGKAFEEAYVGYEARVAS 534

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           G++K+F+K+ A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN
Sbjct: 535 GDLKLFKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 594

Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           ++  E AVCNLGS+NL+AH         + D++K+  T+  A+R+LDNVIDIN + ++KA
Sbjct: 595 TNESEIAVCNLGSVNLVAHMKPAAGGGFELDHEKIKRTVSIAMRMLDNVIDINYYAVDKA 654

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + SN  HR +G+G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS  LA+ERG
Sbjct: 655 RNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSLLAEERG 714

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            Y S++GSLW +G+ P D++ +L + R   + ++ +S L WD L+ R+K  GMRNSNC+A
Sbjct: 715 RYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVDESSTLDWDALRARIKQHGMRNSNCIA 774

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAPTATI+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLK
Sbjct: 775 IAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLK 834

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
           Y DGS+  I+R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKL
Sbjct: 835 YFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKL 894

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---------TH 936
           D  Y+ AW  GLKTTYYLR+  ATS EKST +G  G+LNAV     +++           
Sbjct: 895 DDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGGTSAAAPVSAAPVLPE 952

Query: 937 SLGIPSSCTSDT------ECEVCQ 954
              + + CT         ECE CQ
Sbjct: 953 PEVLGAVCTMRPGDPGFEECEACQ 976


>gi|121595924|ref|YP_987820.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp.
           JS42]
 gi|120608004|gb|ABM43744.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp.
           JS42]
          Length = 972

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 539/966 (55%), Positives = 686/966 (71%), Gaps = 36/966 (3%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           A PS        +   Q+I+RNG V  F+P KI+ A+MKAF+AV G   + S  V++++ 
Sbjct: 18  ATPSATPTGAHPLMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT+  V  L++   +    HIED+QDQVE  LM+  HH++ R YVLYRE R+  RA + 
Sbjct: 78  QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192
                 P  P L +  D G  +  +  RL+ +VE AC+GL  DV +  +++ET +N+YDG
Sbjct: 138 EQL--LPQMPALYV-QDQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   ++  A I ++RTLIEK+P Y   TAR LL  + REVL       +     +M   Y
Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPADMALAY 248

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E F ++I +GV   LL   +M+FDL  L + LK ERD  F+YLGLQ LYDRYFLH+  +
Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQ FFMRVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT   QLSSC+
Sbjct: 309 RIELPQTFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N
Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +   WTLFSP +V DLHDLYG+ FE AY  YE +A+ GE+ +F+++ AV LWRKML+M
Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  
Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +   D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ L I
Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           PYAS  AVE AD SME + ++A  AS +LAQERG YSS++GSLW QG+ P+DS+ LL + 
Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728

Query: 733 R-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+ NL V
Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KSN+SG+FTV+N +LV +LKQ  LWD+ M+ DLK+  GS+  I+R+P  +K ++ATAFE+
Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT V
Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908

Query: 912 EKSTLKGVDGKLNAVPVTDPNSST-----------------------HSLGIPSSCTSDT 948
           E ST+     +LNAV     ++                          +  +      D 
Sbjct: 909 EMSTVNTR--QLNAVASGASDTGEGTMAPSSALNAAVAAAQAQAAAIPATDVKFCAIDDP 966

Query: 949 ECEVCQ 954
            CE CQ
Sbjct: 967 GCEACQ 972


>gi|315122311|ref|YP_004062800.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495713|gb|ADR52312.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 934

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 712/936 (76%), Positives = 811/936 (86%), Gaps = 3/936 (0%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
            YPFPEK+KG++VI+RNG  T FDPSKIS AIMKAF+AVEGK AS S RV++I+  LTE+
Sbjct: 2   TYPFPEKVKGIKVIRRNGKTTPFDPSKISWAIMKAFIAVEGKSASSSSRVRNIVNVLTEE 61

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
           TV +LL    S LI+HIE IQDQVE SLM++ HHK+ REYVLYREERS +R A++HSKSD
Sbjct: 62  TVLKLLHEYSSNLIIHIEAIQDQVEASLMRNDHHKVAREYVLYREERSGIRTAKAHSKSD 121

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
               P LKI MDD T +  +SKRL+MI+EE+C+GLQDVS +++LSET KNMYDG+SE +L
Sbjct: 122 ---TPHLKIRMDDDTFVPLDSKRLKMIIEESCAGLQDVSLELILSETIKNMYDGMSEVEL 178

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           E AL+F+SR LIE+EPNYAKVT R LL+KLRREVLT +YK P+KATH EM  LY  YF +
Sbjct: 179 ELALVFASRALIEREPNYAKVTTRLLLDKLRREVLTAIYKTPKKATHQEMSNLYKNYFLQ 238

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           YIEEG+KA LL ESM +FDL YLAN LK +RD  FEYLGLQ LYDRYFLH++GSR EMPQ
Sbjct: 239 YIEEGIKAHLLAESMKEFDLSYLANALKPDRDLMFEYLGLQTLYDRYFLHVDGSRFEMPQ 298

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           AFFMRVAMG+ALKE EKEKRAVEFYNL+SSFHFMCSTPTLFN+GTRHPQLSSCFLTTVPD
Sbjct: 299 AFFMRVAMGIALKEPEKEKRAVEFYNLISSFHFMCSTPTLFNAGTRHPQLSSCFLTTVPD 358

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  IF A+++NA+LAKYSGGLGNDWT VRGLG+HI GTNGKSQGVIPFLKVANDTAVAV
Sbjct: 359 DLGDIFEAIKDNALLAKYSGGLGNDWTSVRGLGSHIQGTNGKSQGVIPFLKVANDTAVAV 418

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +N  
Sbjct: 419 NQGGKRKGAVCAYLETWHIDIEEFLNLRKNTGDDRRRTHDMNTANWVPDLFMKRVEKNEQ 478

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLFSPDEV DLH LYG +FE AY NYE++A+RGEIK+FRKI+AV+LWRKMLTM+FETGH
Sbjct: 479 WTLFSPDEVGDLHHLYGHDFEKAYSNYEKKAERGEIKLFRKIAAVSLWRKMLTMVFETGH 538

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           PWITFKDPCNIRSPQQHVG V  SNLCTEITLN S +E AVCNLGSINL AH   N  DY
Sbjct: 539 PWITFKDPCNIRSPQQHVGNVLCSNLCTEITLNISKDEVAVCNLGSINLAAHLTENGLDY 598

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           DKLA+TI TAVR+LDNVID+N + I+KA+ SN  HR IGLGLMGFQSALH L IPY S E
Sbjct: 599 DKLANTIHTAVRMLDNVIDVNRYAIKKAENSNRKHRPIGLGLMGFQSALHALRIPYESVE 658

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           AV+ AD+SMEFISFHAISAS  LA+ERG YS+FKGSLW +G+ PIDS+ LL EVRD+  +
Sbjct: 659 AVDFADQSMEFISFHAISASTNLAEERGPYSTFKGSLWSKGILPIDSLQLLEEVRDKCEI 718

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +++SRL WD L++RVK++GMRNSNCMAIAPTATI+NICGVSQSI+PSYQNL+VKSNMSGD
Sbjct: 719 DKSSRLGWDVLRERVKSVGMRNSNCMAIAPTATISNICGVSQSIEPSYQNLFVKSNMSGD 778

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FT+VNS LVN+LK R LWDE MISDLK++DGSIGNIERIP+DLKK+HATAFEIDP+WLI+
Sbjct: 779 FTIVNSCLVNDLKARGLWDEVMISDLKHYDGSIGNIERIPEDLKKLHATAFEIDPIWLIK 838

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +ASRRQKWIDQAQSLNLYL +PSGKKLDFIYRQ+WLMGLKTTYYLRSRSAT VEKSTLK 
Sbjct: 839 AASRRQKWIDQAQSLNLYLSDPSGKKLDFIYRQSWLMGLKTTYYLRSRSATHVEKSTLKE 898

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           VDGKLN+VP+ D NSS       SSC S  ECEVCQ
Sbjct: 899 VDGKLNSVPIMDHNSSELLSTPQSSCDSGVECEVCQ 934


>gi|299065647|emb|CBJ36819.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum CMR15]
          Length = 987

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/988 (55%), Positives = 685/988 (69%), Gaps = 48/988 (4%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKI--KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
                    + P+              ++I+RNG V  F+PSKI+ A+ KAF+AV G   
Sbjct: 10  SGTANPTAFSQPAEGTAVASGAGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVLYR
Sbjct: 70  AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E RS  RA    +    P    L +  D G     +   L  ++  AC+ L + V  + +
Sbjct: 130 ERRSQERAQAGET-QQQPAFIGLNVT-DGGITRPLDMAALRNLIVSACADLGESVDPEPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L       +
Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           + T  EM   Y +YF ++I+ G+ A LL + +  FDL  L   L   RD  F YLGLQ L
Sbjct: 242 EVTQAEMAGRYADYFPQFIKRGINAGLLDDKLAQFDLAKLGAALDASRDLQFNYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RAVEFY LLSSF FM STPTLFNS
Sbjct: 302 YDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDREARAVEFYQLLSSFDFMSSTPTLFNS 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS
Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP    DLHD  G+ FE AY  YE +  RGEIK+F+K+ 
Sbjct: 482 ANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGRAFEAAYLGYEEKVARGEIKLFKKMP 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601

Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL+AH           D+DKL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 602 LGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPV 661

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGFQ +LH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGSLW
Sbjct: 662 GLGIMGFQDSLHVLRIPYATDAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+GV P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+NI
Sbjct: 722 DRGVLPQDSLKLLAQERGGYLEADLSSTMDWDGLRARIQQHGMRNSNCVAIAPTATISNI 781

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+
Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL 
Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932
           GLKTTYYLR+  AT VEKST+    G LNAV                             
Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDVGSVAAAGAAPVASASALDSVAAT 959

Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954
           +        + CT         ECE CQ
Sbjct: 960 APAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|94312019|ref|YP_585229.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           metallidurans CH34]
 gi|93355871|gb|ABF09960.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           metallidurans CH34]
          Length = 979

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/953 (58%), Positives = 694/953 (72%), Gaps = 34/953 (3%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +  ++I+RNG V SF+P+KI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++ 
Sbjct: 36  QDYKLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRS 95

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP--K 144
             +    HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA  +             
Sbjct: 96  RPNGGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERAQANAQAVARVQEAGVS 155

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
             +  D+G     +   L  +++ ACSGL + VS++ +L ET KN+YDG+  + +  + I
Sbjct: 156 FNVT-DNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAI 214

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++RTLIEK+P Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G
Sbjct: 215 LAARTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARG 268

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           ++A LL E +  +DL  L   L   RDF F YLGLQ LYDRYFLH++  RIEMPQAFFMR
Sbjct: 269 IEAELLDEKLATYDLARLGAALDASRDFQFNYLGLQTLYDRYFLHVDEVRIEMPQAFFMR 328

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGLAL+E ++E RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI
Sbjct: 329 VAMGLALEEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGI 388

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGK
Sbjct: 389 YEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGK 448

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFS
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P    DLHD  GK FE AY  YE +A  GE+K+F+K+ A+ LWRKML MLFETGHPWITF
Sbjct: 509 PASCPDLHDKVGKAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITF 568

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DY 618
           KDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+
Sbjct: 569 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDH 628

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL  TIRTA+R+LDNVIDIN + +EKA+ SN  HR +G+G+MGFQ  LH+L  PYAS  
Sbjct: 629 AKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDA 688

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELA 737
           AV+ AD SME + ++A  AS ELA+ERG YS+++GSLWD+G+ P DS+ LLAE R   L 
Sbjct: 689 AVKFADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLD 748

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++ +S + WD L+ R+K  GMRNSNC+AIAPTATI+NI GVS  I+P++QNLYVKSN+SG
Sbjct: 749 VDLSSTMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 808

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTVVN +LV +LK+R LWDE M++DLKY DGS+  I+RIP DL+ I+ATAFE++P WL+
Sbjct: 809 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLV 868

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ +AT VEKST++
Sbjct: 869 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVQ 928

Query: 918 GVDGKLNAVPVTDPNSST----------HSLGIPSSCTSDT------ECEVCQ 954
              G LNAV       S                 + CT         ECE CQ
Sbjct: 929 R--GSLNAVSSGADGQSGIDAAASAAPAMPEAEGAVCTMRPGDPGFEECEACQ 979


>gi|17547524|ref|NP_520926.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           solanacearum GMI1000]
 gi|17429828|emb|CAD16512.1| putative ribonucleoside reductase 1 (large chain) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 987

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/988 (55%), Positives = 688/988 (69%), Gaps = 48/988 (4%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKI--KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
                    + P+              ++I+RNG V  F+PSKI+ A+ KAF+AV G   
Sbjct: 10  SGTANPTAFSQPAEGTAVASGAGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVLYR
Sbjct: 70  AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E RS  RA    +    P    L +  D G     +   L  ++  AC+GL + V  + +
Sbjct: 130 ERRSQERAQAGET-QQQPAFIGLNVT-DGGITRPLDMAALRNLIVSACAGLGESVDPEPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L       +
Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           + T  EM   Y +YF ++I+ G+ A LL +++  FDL  L   L   RD  F YLGLQ L
Sbjct: 242 EVTQAEMAGRYADYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFNS
Sbjct: 302 YDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLFNS 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS
Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +   WTLFSP    DLHD  GK FE AY  YE +  RGEIK+F+K+ 
Sbjct: 482 ANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEAAYLGYEDKVARGEIKLFKKMP 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 542 ALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601

Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL+AH           D+DKL  T+RTA+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 602 LGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPV 661

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGFQ ALH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGSLW
Sbjct: 662 GLGIMGFQDALHVLRIPYATDAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+GV P DS+ LLA+ R   L  + +S + WD L++R++  GMRNSNC+AIAPTATI+NI
Sbjct: 722 DRGVLPQDSLKLLAQERGGYLEADLSSTMDWDGLRERIQQHGMRNSNCVAIAPTATISNI 781

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+
Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL 
Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932
           GLKTTYYLR+  AT VEKST+    G LNAV                             
Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDAGSVAAAGAAPVAPASALDTVAAT 959

Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954
           +        + CT         ECE CQ
Sbjct: 960 APAMPDAEGAVCTMRPGDPGFEECEACQ 987


>gi|255019899|ref|ZP_05291974.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970679|gb|EET28166.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 945

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/960 (58%), Positives = 701/960 (73%), Gaps = 40/960 (4%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
           +  S A      +   +VI+RNG V  FD SKI  A+ KAF+AV+G   + S RV+D++ 
Sbjct: 7   SAQSEALEVRADLGRYRVIRRNGSVVPFDASKIQVAMTKAFLAVDGGTGAASARVRDLVG 66

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT Q V  L +       +HIEDIQDQVE +LM++G H++ R YVLYREER+  RA + 
Sbjct: 67  RLTAQVVETLERRQPGGGTLHIEDIQDQVELALMRAGEHEVARAYVLYREERARERAQKR 126

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
            +      AP L++   DG+    + +RL  ++ EACSGL + VS   +L  T +N+YDG
Sbjct: 127 EASP--ASAPILRVRHADGSEQPLDLERLRQVIGEACSGLGEAVSVDAILQATQRNLYDG 184

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +SE +L  A I + R LIE++P YA  TAR LL+++RREVL       + ATH EM   Y
Sbjct: 185 ISEEELFQAPILACRVLIEQDPAYAHATARLLLDRVRREVLG------EPATHAEMAQRY 238

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           PEYF  Y+  G++  LL   +  FDL  +A  L+ ERD  F+YLGLQILYDRYFLH+   
Sbjct: 239 PEYFKDYLRTGIQHELLDPRLAQFDLDRIAAALRPERDLDFQYLGLQILYDRYFLHVRER 298

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQAF+MRVAMGLAL+E ++E++A+ FY +LS F F+ STPTLFN+GT  PQLSSCF
Sbjct: 299 RIELPQAFWMRVAMGLALEEIDREEQAIAFYEVLSRFEFVSSTPTLFNAGTLRPQLSSCF 358

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL GI+ A+++NA+L+KYSGGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N
Sbjct: 359 LTTVADDLDGIYEAIKDNALLSKYSGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 418

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+R
Sbjct: 419 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMER 478

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  WTLFSP+EV+DLHDL G+ F+  YE+YER AD GEI +F+++ A+ LWRKMLTM
Sbjct: 479 VEANGQWTLFSPNEVADLHDLTGQAFKERYEHYERLADAGEITLFKRLPALQLWRKMLTM 538

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+AH  
Sbjct: 539 LFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVAHLR 598

Query: 613 NNQF-----------------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
                                D DKLA T+R A+R+LDNVID+N + + KA+ SN  HR 
Sbjct: 599 AGLPGQGLRTEASADELLALVDTDKLARTVRVAMRMLDNVIDMNYYAVAKARNSNLRHRP 658

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLGLMGF  AL  L IPYAS  AVE AD S E IS+HAI AS +LA+ERG+Y SF GSL
Sbjct: 659 VGLGLMGFSDALLALRIPYASQAAVEFADISQELISYHAIDASADLARERGSYRSFPGSL 718

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           W QG+ P+DSI LLA  R   + ++R+ RL W+ L+ +V   GMRNSNC+AIAPTATI+N
Sbjct: 719 WSQGILPLDSIELLARSRVAGVDVDRSQRLDWESLRTKV-KGGMRNSNCLAIAPTATISN 777

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVSQ I+P YQNLYVKSN+SG+FTVVN++LV +LK  DLWDE M++DLKY DGS+  I
Sbjct: 778 IVGVSQGIEPIYQNLYVKSNLSGEFTVVNAYLVRDLKAADLWDEVMVNDLKYFDGSVVPI 837

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP+ LK ++A AFEIDP WL+E+A+RRQKW+DQ+QSLNLY  +PSGKK+D  YR AW 
Sbjct: 838 DRIPEALKPLYANAFEIDPQWLVEAAARRQKWLDQSQSLNLYFGQPSGKKIDETYRLAWR 897

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            GLKTTYYLRS  AT+ EKST+    G LNAVP            + +    D  CE CQ
Sbjct: 898 RGLKTTYYLRSLGATAAEKSTV--SKGVLNAVPGQ----------VKACAIEDPGCEACQ 945


>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 1306

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 533/928 (57%), Positives = 680/928 (73%), Gaps = 13/928 (1%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P             Q+I+RNG V  F+P+KI+ A+MKAF+AV G   + S  V++ +  L
Sbjct: 37  PGSESTVTNAFAQYQIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRETVDGL 96

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           T+Q +  L++        HIED+QDQVE  LM+ GHH+I R YVLYRE R+  RA     
Sbjct: 97  TQQVIRALVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERA--KQV 154

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLS 194
            ++AP AP + ++ D+G  +  +  +L+  +E ACSGL  DV +  +L+ET +N+YDG+ 
Sbjct: 155 ATEAPAAPVIHVI-DNGQRVPLDLAQLQFRIETACSGLGADVKAAPILAETMRNLYDGVP 213

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             ++  A I ++RTLIEK+P+Y   TAR L   + REVL       +     +MQ  Y +
Sbjct: 214 LDEVYKAAILAARTLIEKDPDYTYATARLLFHTISREVLG------RDVAQADMQEAYAD 267

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  +I+ G+ A LL E +  FDL  L + LK  RD  F+YLGLQ LYDRYFLH   +RI
Sbjct: 268 YFPGFIKRGIAAELLDEKLQQFDLKRLGSALKAGRDLQFDYLGLQTLYDRYFLHEGKTRI 327

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+LT
Sbjct: 328 ELPQAFFMRVAMGLSLNEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLT 387

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDT
Sbjct: 388 TVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDT 447

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV 
Sbjct: 448 AVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVM 507

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +   WTLFSP  V DLHDL+G EFE AY  YE +A RGEIK  R + A  LWRKMLTMLF
Sbjct: 508 EKGTWTLFSPSNVPDLHDLFGAEFEKAYVAYEEKAARGEIKPSRTVQASDLWRKMLTMLF 567

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NLL H  + 
Sbjct: 568 ETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDG 627

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D++KL  TI TA+R+LDNVIDIN + ++KA+ SN  HR +GLGLM FQ +L+ L IPY
Sbjct: 628 ALDHNKLKRTISTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGLMAFQDSLYELRIPY 687

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           AS  AVE AD+SME IS++A  AS +LA+ERG Y S+KGSLWD+GV P D++ +LA  R 
Sbjct: 688 ASDAAVEFADQSMEAISYYAYWASTDLARERGKYHSYKGSLWDKGVLPPDTLDMLANARG 747

Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             + ++R+S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+P + NL VKS
Sbjct: 748 GYVEVDRSSTLDWNALRNKIAADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKS 807

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           N+SG+FTV+NS+LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K+++ATAFE++ 
Sbjct: 808 NLSGEFTVINSYLVRDLKRLGLWDDVMVMDLKHFDGSLSPIDRVPQEIKQLYATAFEVET 867

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+ SAT  EK
Sbjct: 868 RWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMSATHAEK 927

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           ST+    G+LNAV   +    +  +   
Sbjct: 928 STV--TAGRLNAVSSGNDAQGSTKMSSA 953


>gi|291615086|ref|YP_003525243.1| ribonucleoside-diphosphate reductase, subunit alpha [Sideroxydans
           lithotrophicus ES-1]
 gi|291585198|gb|ADE12856.1| ribonucleoside-diphosphate reductase, alpha subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 946

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/941 (57%), Positives = 682/941 (72%), Gaps = 24/941 (2%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   +VI+RNG V SF+PSKIS A+ KAF+AV G   + S RV+++++ LT   V+ L++
Sbjct: 18  LDQYKVIRRNGSVVSFEPSKISIAVTKAFIAVNGGQGAASARVRELVEQLTANVVSALIR 77

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                  +HIEDIQDQVE SLM+SG H + R YVLYRE+R+  R+        AP     
Sbjct: 78  RQPHGGTLHIEDIQDQVELSLMRSGEHDVARSYVLYREQRTRERSKGKKEIDAAPALN-- 135

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
             + D       +  +L   ++ AC GL   V +  +L  T K++YDG++  ++    I 
Sbjct: 136 --IKDGDVTRPLDVVQLSAQIQSACVGLGGAVDADKILKLTLKDLYDGVAVEEVRKCAIL 193

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S+RTLIE++P Y+ VTAR LL  +  E+L        + +  +M   Y EYF ++I+ G+
Sbjct: 194 SARTLIEQDPAYSFVTARLLLNNICCEILG------GQVSQADMAERYAEYFPKFIKRGI 247

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           +A LL+E +  FDL  LA  L   RD  F YLGLQ LYDRYFLH++G RIE+PQAFFMRV
Sbjct: 248 EAELLNEELGHFDLDRLAGALDSSRDLQFNYLGLQTLYDRYFLHVDGQRIELPQAFFMRV 307

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGL+L E  +E+RA+EFY LLSSF FM STPTLFNSGTR  QLSSC+LTTV DDL GI+
Sbjct: 308 AMGLSLNEINREERAIEFYRLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIY 367

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR
Sbjct: 368 EALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 427

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV +   WTLFSP
Sbjct: 428 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFSP 487

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               DLHD +G EFE AY  YE +   GE+K+F+K+ A +LWRKMLTMLFETGHPWITFK
Sbjct: 488 STCPDLHDKFGAEFEKAYTAYEAKVASGELKLFKKVPAQSLWRKMLTMLFETGHPWITFK 547

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA------HFANNQFDY 618
           DPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL A      H    Q D+
Sbjct: 548 DPCNIRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLAAHLFPKGHAKAGQIDH 607

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           DKL  T+ TA+R+LDNVIDIN + + KA+ SN  HR +GLG+MGFQ  LH L IPY+S  
Sbjct: 608 DKLKRTVSTAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHDLRIPYSSDA 667

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELA 737
           A+E AD SME + ++A  AS +LA ERG Y+S++GSLWD+G+ P DS+ LL E R   + 
Sbjct: 668 AIEFADRSMEAVCYYAYWASTDLAAERGRYASYRGSLWDKGILPQDSLNLLLEQRGGYVE 727

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++ +S L WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQN++VKSN+SG
Sbjct: 728 VDMSSNLDWDALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIEPTYQNIFVKSNLSG 787

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTV+N  LVN+LK   LWDE MI+DLKY DGS+  I+RIP +L++++ATAFE++P WLI
Sbjct: 788 EFTVINDHLVNDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRELYATAFEVEPKWLI 847

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E+ASRRQKWIDQAQSLN+Y+   SG+KLD  Y+ AWL GLKTTYYLR+  ATS EKST +
Sbjct: 848 EAASRRQKWIDQAQSLNIYMSGVSGRKLDETYKLAWLRGLKTTYYLRALGATSAEKSTSR 907

Query: 918 GVDGKLNAVPV----TDPNSSTHSLGIPSSCTSDTECEVCQ 954
              G LNAV       + ++S            + ECE CQ
Sbjct: 908 A--GSLNAVSSGGGAGEMSASPVVEEAKFCSIDNPECEACQ 946


>gi|91785258|ref|YP_560464.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           xenovorans LB400]
 gi|91689212|gb|ABE32412.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
           LB400]
          Length = 1001

 Score =  975 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/918 (59%), Positives = 679/918 (73%), Gaps = 23/918 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQAQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  R    H        P L +  D+G     +   L  I+E ACS L D VS+  +++E
Sbjct: 135 TQAR---GHDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LS+F FM STPTLFNSGTR
Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTR 364

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQ 544

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604

Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  T+  A+R+LDNVIDIN + + KA+ SN  HR +G+G
Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LHLL  PYAS EAV  AD SME + ++A  AS ELAQERG YSS++GSLWD+G
Sbjct: 665 IMGFQDCLHLLRTPYASEEAVRFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724

Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W EL+ R+   GMRNSNC+AIAPTATI+NI GV
Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIAQYGMRNSNCVAIAPTATISNIIGV 784

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AW+ GLK
Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904

Query: 899 TTYYLRSRSATSVEKSTL 916
           TTYYLR+ +AT VEKST+
Sbjct: 905 TTYYLRTMAATHVEKSTV 922


>gi|307546479|ref|YP_003898958.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
 gi|307218503|emb|CBV43773.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
          Length = 968

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/965 (55%), Positives = 681/965 (70%), Gaps = 32/965 (3%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS++   P   + ++VIKR G V  FD  KI+ A+ KAF+AVEG  A+ S RV+D ++  
Sbjct: 10  PSVSVTAP---QTLRVIKRTGDVVPFDSGKIAVALSKAFIAVEGDNAATSSRVRDFVQRA 66

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           +E      L+       +HIEDIQDQVE +LM++G  K+ R YVLYREE +  RA     
Sbjct: 67  SENIEQAFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARARAESGAD 126

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
            +     P L +   DG+    +  R+E +V +AC  L +V    ++ ++ KN+YDG++ 
Sbjct: 127 ITK--PHPTLNVTAPDGSTRPLDLGRVETLVFDACENLANVEPGKIVEDSLKNLYDGVTV 184

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             +  AL+ ++RTL+EK+PNY  VTAR L + LRRE L +     ++AT+ EM   Y   
Sbjct: 185 DGVSQALMMTARTLVEKDPNYTYVTARLLQDNLRREAL-SFLGIAEEATYQEMADYYKPA 243

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  YI +G++   L   + +FDL  L + L + RD  F YLGLQ LYDRYF+H +  R E
Sbjct: 244 FQAYIAKGIEFEQLDPRLAEFDLERLGDALDHTRDAQFTYLGLQTLYDRYFIHRDEVRYE 303

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ  FMRVAMGLAL E ++E RA+EFY LLSSF +M STPTLFNSGT   QLSSC+LTT
Sbjct: 304 LPQVMFMRVAMGLALNEDDREARAIEFYELLSSFDYMASTPTLFNSGTVRSQLSSCYLTT 363

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPDDL  I+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTA
Sbjct: 364 VPDDLDNIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTA 423

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV  
Sbjct: 424 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFD 483

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  WTLFSP    DLHDLYG  FE  Y+ YE     G++K+F+++ A  LWR+ML+MLFE
Sbjct: 484 DGEWTLFSPATCPDLHDLYGAAFEKRYQEYEEMTRNGQLKLFKRVRAKDLWRRMLSMLFE 543

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL  H  + Q
Sbjct: 544 TGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSINLAQHVTDGQ 603

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD DKL  T++TAVR+LDNVIDIN + + +A++SN  HR +GLG+MGFQ AL+   I YA
Sbjct: 604 FDGDKLKKTVKTAVRMLDNVIDINYYAVPQAERSNFKHRPVGLGIMGFQDALYAQDIAYA 663

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734
           S EAV  AD SME +S+HAI AS +LA ERG Y S++GSLW QG+ PIDSI  L + R  
Sbjct: 664 SDEAVAFADTSMELVSYHAIEASSDLAAERGHYESYEGSLWSQGILPIDSIEKLKQERGE 723

Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             + ++ ++   WD +++++   GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKS
Sbjct: 724 KYIEVDTSTTQDWDRIREKIAVQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLFVKS 783

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           N+SG+FTVVN+++VN+LK+R LWDE MI+DLKY+DGS+  I+R+P+DLK  +ATAFE +P
Sbjct: 784 NLSGEFTVVNAYMVNDLKERGLWDEVMINDLKYYDGSVQAIDRVPEDLKAKYATAFETEP 843

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+E+A+RRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+  ATSVEK
Sbjct: 844 KWLVEAAARRQKWIDQAQSLNLYIQGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEK 903

Query: 914 STLKG-----------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDT-E 949
           ST+                            +   V       S      PS+   D   
Sbjct: 904 STVDRGNLNAVSNASPSTAPAPAPEATPQAQEPRGVDDFLKGKSGSGSRAPSAGEIDELG 963

Query: 950 CEVCQ 954
           CE CQ
Sbjct: 964 CEACQ 968


>gi|119478321|ref|ZP_01618352.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448661|gb|EAW29906.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 962

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/941 (58%), Positives = 696/941 (73%), Gaps = 8/941 (0%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
            L    P +   V+VIKRNG V S+D SKI+ AI KAF+AVEG  A+ S R+ + ++ L+
Sbjct: 27  ELQATAPGQ---VRVIKRNGTVVSYDDSKIAVAITKAFLAVEGGSAAASSRIHETVEKLS 83

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q      +   S   +HIEDIQDQVE +LM+SG HK+ R+YVLYREER      +  + 
Sbjct: 84  LQVSAIFKRRMPSGGTIHIEDIQDQVELALMRSGEHKVARDYVLYREERRLQ-REEKKAS 142

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P +++ + DG+ +  +  R+E++V EAC GL DV +++++ E  KN+YDG+  +
Sbjct: 143 EPTKAHPTIRVTLSDGSQVPLDLGRMEVVVSEACDGLADVKAQVIIDEALKNLYDGVPIA 202

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T+L+ +SRTL+EKEPNY+ VTAR LL+ LR E L         AT  EM  LY +  
Sbjct: 203 DVNTSLVITSRTLVEKEPNYSYVTARLLLDNLRAEALP-FLGIANSATQSEMASLYAKAL 261

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             YI +G++  LL  +++D+DL  L   L   RD  F YLGLQ LYDRYF+H N  RIE+
Sbjct: 262 PAYINKGIELELLAPNLLDYDLDKLGQALDANRDQLFNYLGLQTLYDRYFIHSNDIRIEL 321

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRVAMGLA +E  +E RA+EFY LLSSF +M STPTLFN+GT  PQLSSC+LTTV
Sbjct: 322 PQIFFMRVAMGLAYREENREDRAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTV 381

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTAV
Sbjct: 382 PDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAV 441

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLFMKRV  +
Sbjct: 442 AVNQGGKRKGAVCAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDD 501

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP++V DLHDLYG+ FE  Y  YE Q   G++K+F+ + A  LWRKML MLFET
Sbjct: 502 GEWTLFSPNDVPDLHDLYGEAFETRYTEYEAQCKSGDMKLFKTVRAQELWRKMLGMLFET 561

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGS+NL  H + N  
Sbjct: 562 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSVNLAQHVSENGL 621

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D  KL  TI TAVR+LDNVIDIN +++ +A+ SN  HR +GLGLMGFQ AL+  H+ Y S
Sbjct: 622 DLSKLEKTITTAVRMLDNVIDINYYSVGQAETSNMRHRPVGLGLMGFQDALYNQHMAYGS 681

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734
            +AVE AD SME IS+ AI AS  LA+ERG+YS+F+GSLW QG+ PIDS+  L   R   
Sbjct: 682 DQAVEFADRSMEAISYFAIQASSALAEERGSYSTFEGSLWSQGILPIDSVKTLIAERGND 741

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + ++++  L W  L+ RV+  GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN
Sbjct: 742 YIDVDQSQTLDWSSLRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSN 801

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTVVN  LV +LK R LWD  M++DLKY++GS+ NI+R+P ++K+++ATAFE++P 
Sbjct: 802 LSGEFTVVNPHLVKDLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEPR 861

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +AT  EKS
Sbjct: 862 WIVDAASRRQKWIDQAQSLNLYISGASGKKLDITYRMAWYKGLKTTYYLRALAATGTEKS 921

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           T+        +     P ++     +P +C+  D +CE CQ
Sbjct: 922 TIDTGSLNAVSSKTEAPVAAAGPAPVPEACSLDDPDCEACQ 962


>gi|167574514|ref|ZP_02367388.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           oklahomensis C6786]
          Length = 944

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/943 (58%), Positives = 691/943 (73%), Gaps = 23/943 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  +   A  + +  D+G     +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAADVETSAAGGINVT-DNGVTRPLDMSALHALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            ++SET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVSETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPVLRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRVPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +  +S   
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSGGA 944


>gi|167721299|ref|ZP_02404535.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei DM98]
          Length = 942

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/940 (58%), Positives = 693/940 (73%), Gaps = 23/940 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A     ++A  A  + +  D+G   + +   L  ++  AC GL + VS +
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGNAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +   S
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTS 941


>gi|325528899|gb|EGD05935.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           sp. TJI49]
          Length = 963

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/937 (58%), Positives = 678/937 (72%), Gaps = 25/937 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G     P   +         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLGGAAQGAPALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV++++  LT   V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVDQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVRA---AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VS 177
           RE+R   R     ++           + ++ D+G     +   L  +V  AC GL   V+
Sbjct: 131 REKRHLERQHAGEEAAVAGGEAAGGVINVV-DNGVTRPLDLNALRALVVSACDGLGAAVN 189

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
              +++ET KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L    
Sbjct: 190 PDPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG--- 246

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
              ++    EM   Y EYF ++++ GV A LL + ++ FDL  L + L   RD  F YLG
Sbjct: 247 ---EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGDALDASRDLQFGYLG 303

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           LQ LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPT
Sbjct: 304 LQTLYDRYFLHVGGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPT 363

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFNSGT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GT
Sbjct: 364 LFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGT 423

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTH
Sbjct: 424 NGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTH 483

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F
Sbjct: 484 DMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGAEFEAAYTAYEEKVARGEIKLF 543

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           +KI A  LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E 
Sbjct: 544 KKIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTEI 603

Query: 598 AVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           AVCNLGS+NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  
Sbjct: 604 AVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLK 663

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           HR +G+G+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++
Sbjct: 664 HRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYR 723

Query: 713 GSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           GSLWD+G+ P D++ LLAE R   + ++ +  L W  L+ R+   GMRNSNC+AIAPTAT
Sbjct: 724 GSLWDRGILPQDTLKLLAEARGGYVEVDSSESLDWTALRARIAAHGMRNSNCVAIAPTAT 783

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +
Sbjct: 784 ISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGML 843

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
             I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ 
Sbjct: 844 SRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKL 903

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           AWL GLKTTYYLR+ +AT VEKST+    G LNAVP 
Sbjct: 904 AWLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPT 938


>gi|83746811|ref|ZP_00943859.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
           solanacearum UW551]
 gi|207744362|ref|YP_002260754.1| ribonucleoside reductase 1 (large chain) (partial sequence n
           terminus) protein [Ralstonia solanacearum IPO1609]
 gi|83726580|gb|EAP73710.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia
           solanacearum UW551]
 gi|206595767|emb|CAQ62694.1| ribonucleoside reductase 1 (large chain) (partial sequence n
           terminus) protein [Ralstonia solanacearum IPO1609]
          Length = 987

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/988 (55%), Positives = 688/988 (69%), Gaps = 48/988 (4%)

Query: 5   KDVNKGDEDAFPSLAYPFPEK--IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
                    + P+              ++I+RNG V  F+PSKI+ A+ KAF+AV G   
Sbjct: 10  SGTANPTAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVLYR
Sbjct: 70  AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E RS  RA    ++   P    L +  D G     +   L  ++  AC+GL D V  + +
Sbjct: 130 ERRSQERAQAGETQQP-PAFIGLNVT-DGGITRPLDMVALRNLIVSACAGLGDAVDPEPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L       +
Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           + T  EM   Y +YF ++I+ G+ A LL +++  FDL  L   L   RD  F YLGLQ L
Sbjct: 242 EVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY+LLSSF FM STPTLFNS
Sbjct: 302 YDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYHLLSSFDFMSSTPTLFNS 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS
Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +N  WTLFSP    DLHD  G+ FE AY  YE +  RGEI +F+K+ 
Sbjct: 482 ANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGRAFEQAYLGYEEKVARGEITLFKKMP 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601

Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL+AH           D+DKL  T+R A+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 602 LGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMRMLDNVIDINYYAVKKARDSNLRHRPV 661

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGFQ ALH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGSLW
Sbjct: 662 GLGVMGFQDALHVLRIPYANEAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+G+ P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+NI
Sbjct: 722 DRGILPQDSLKLLAQERGGYLEADLSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATISNI 781

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+
Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL 
Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932
           GLKTTYYLR+  AT VEKST+    G LNAV                             
Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDAGSVSAAGAAPVAPASALDAVAAT 959

Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954
           +        + CT         ECE CQ
Sbjct: 960 APAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|167920555|ref|ZP_02507646.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei BCC215]
          Length = 952

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/934 (58%), Positives = 691/934 (73%), Gaps = 23/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A     ++A  A  + +  D+G   + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + +HA  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYHAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|167904348|ref|ZP_02491553.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei NCTC 13177]
          Length = 956

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/936 (58%), Positives = 692/936 (73%), Gaps = 23/936 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A     ++A  A  + +  D+G   + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRTLDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTS 937


>gi|167912608|ref|ZP_02499699.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 112]
          Length = 953

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/934 (58%), Positives = 691/934 (73%), Gaps = 23/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A     ++A  A  + +  D+G   + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|167740268|ref|ZP_02413042.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 14]
 gi|167817488|ref|ZP_02449168.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei 91]
 gi|167847375|ref|ZP_02472883.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           pseudomallei B7210]
          Length = 954

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/934 (58%), Positives = 691/934 (73%), Gaps = 23/934 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A     ++A  A  + +  D+G   + +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L GLKTTYYLR+ +AT VEKST+    G LNAVP
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935


>gi|89902116|ref|YP_524587.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodoferax
           ferrireducens T118]
 gi|89346853|gb|ABD71056.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
           T118]
          Length = 981

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/984 (54%), Positives = 690/984 (70%), Gaps = 43/984 (4%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++  +         +       +   Q+I+RNG V  F+P+KI+ A+MKAF+AV G   
Sbjct: 9   PARHSDVPAVHRMDGIDDTAAHSLSQYQIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQG 68

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++ +  LT+  +  L++   +    HIED+QDQVE  LM+ GHH++ R YVLYR
Sbjct: 69  AASASVRESVDGLTQGVIHALMRSRPAGGTFHIEDVQDQVELGLMRGGHHEVARAYVLYR 128

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
           E+R+  RA Q    + A  AP L ++   G ++  +  RL+ I+E AC+GL  D+  + +
Sbjct: 129 EKRTQERAQQ--LIATAATAPLLHVVDKGGRIV-LDLARLKGIIESACAGLGADIKPEPI 185

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L+ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L   +  EVL       +
Sbjct: 186 LAETMRNLYDGVPMEEVYKASILAARTLIEKDPDYTYATARLLFHTIANEVLG------R 239

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                +M   Y +YF ++I++G+   LL E +  FDL  L   LK ERD  F+YLGLQ L
Sbjct: 240 DVVQADMAQAYVDYFPQFIKKGIDHELLDERLQQFDLQRLGAALKAERDLKFDYLGLQTL 299

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLH+  +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFNS
Sbjct: 300 YDRYFLHVGKARIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNS 359

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LGAHI GTNG+S
Sbjct: 360 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGAHIKGTNGES 419

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 420 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 479

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANW+PDLFM+RV +   WTLFSP+ V DLHD +G +FE AY  YE +A RGEI+  R + 
Sbjct: 480 ANWVPDLFMRRVMEKGQWTLFSPNNVPDLHDKFGADFEKAYVAYEEKAARGEIRPARTVQ 539

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWRKMLTMLFETGHPWITFKD CNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCN
Sbjct: 540 AADLWRKMLTMLFETGHPWITFKDACNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCN 599

Query: 602 LGSINLLAHFANNQF---------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
           LGS+NLL H  N            D+ KL  TI TA+R+LDNVIDIN + ++KA+ +N  
Sbjct: 600 LGSVNLLQHLKNAPAGSADGAKVLDHAKLQKTITTAMRMLDNVIDINFYAVKKARDANMR 659

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           HR +GLG+M FQ +L+ L IPYAS  AV  AD SME I ++A  AS ELA+ERG Y+S+K
Sbjct: 660 HRPVGLGVMAFQDSLYELRIPYASDAAVAFADTSMEAICYYAYWASTELARERGQYTSYK 719

Query: 713 GSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           GSLWDQG+ PID++ +LA  R   + ++R+S L W+ L+K++   GMRNSNC AIAPTAT
Sbjct: 720 GSLWDQGILPIDTLDMLARERGGYVEVDRSSTLDWEALRKKIAKDGMRNSNCTAIAPTAT 779

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+NI GV  SI+P + NL VKSN+SG+FT++NS+LV +LK+  LWD+ M+ DLK+ DGS+
Sbjct: 780 ISNIIGVDASIEPCFGNLSVKSNLSGEFTIINSYLVQDLKRLGLWDDVMVMDLKHFDGSL 839

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
             I+R+P D+K ++ATAFEI+  WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ 
Sbjct: 840 NPIDRVPADVKALYATAFEIETRWLVEAAARRQKWIDQAQSLNIYMGGASGKKLDDTYKL 899

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN------------------- 932
           AW+ GLKTTYYLR+ SAT  EKST+    G++NAV     +                   
Sbjct: 900 AWIRGLKTTYYLRTMSATHAEKSTV--TAGRMNAVSSGSESAHGGASMSALDAAAATARM 957

Query: 933 --SSTHSLGIPSSCTSDTECEVCQ 954
             +S  +  I      D  CE CQ
Sbjct: 958 QMASGPATDIKFCGVDDPTCESCQ 981


>gi|332286775|ref|YP_004418686.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
           sp. T7-7]
 gi|330430728|gb|AEC22062.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas
           sp. T7-7]
          Length = 973

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/977 (55%), Positives = 695/977 (71%), Gaps = 35/977 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKI-KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           P            P+ A    +K      +I+RNG V  F+P KI+ A+ KAF+AV G  
Sbjct: 7   PESGTAALRHPTTPAPAENSSDKPWNNFHIIRRNGVVVGFEPGKIAIAMTKAFLAVNGGQ 66

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT Q V  L+++  S    HIE+IQDQVE +LM+SG H + R YVLY
Sbjct: 67  GAASARVRELVETLTAQVVNALVRNRPSGGTFHIEEIQDQVELTLMRSGEHDVARAYVLY 126

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKI 180
           RE+RS  RA QS     A     + +  D+G     +  RL   + EA   L  ++ ++ 
Sbjct: 127 REKRSQERA-QSTPAPAATDQTIIHVT-DNGVQCPLDLARLRATITEAGLNLPHNIDAEA 184

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L ET KN+YDG+   ++  + I S+R ++E +P+Y++VTAR LL  +R+EVL       
Sbjct: 185 ILKETVKNIYDGIPVDEVFKSAILSARAMVENDPSYSQVTARLLLHTIRKEVLG------ 238

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ +  +M   Y EYF ++++ G++  LL E +  FDL  LA  LK ERD  F YLGLQ 
Sbjct: 239 EEVSQSDMATRYAEYFPQFLKAGIEGGLLDEKLAQFDLPKLAAALKAERDLQFNYLGLQT 298

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+ G RIE+PQ FFMRVAMGLAL E  +E+RA+EFY +LSSF FM STPTLFN
Sbjct: 299 LYDRYFLHLRGRRIELPQVFFMRVAMGLALNEINREERAIEFYEILSSFDFMSSTPTLFN 358

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+
Sbjct: 359 SGTLHSQLSSCYLTTVSDDLAGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGE 418

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGD+RRRTHDMN
Sbjct: 419 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDERRRTHDMN 478

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +N  WTLFSP +  DLHD YGK+FE AY  YE +  RGE+ +F+K+
Sbjct: 479 TANWIPDLFMKRVMENGEWTLFSPSDAPDLHDKYGKDFEEAYLGYEDKVARGELPLFKKV 538

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVC
Sbjct: 539 PANMLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVC 598

Query: 601 NLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL AH           D++KL  TI  A+R+LDNVIDIN + + KA+ SN  HR 
Sbjct: 599 NLGSVNLAAHLKQDANGQYVLDHEKLERTIGIAMRMLDNVIDINYYAVPKARNSNVRHRP 658

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G+MGFQ  LH++ +P+AS +AVE +D SME   ++A  AS +LA ERG Y+SFKGSL
Sbjct: 659 VGMGVMGFQDCLHMMRVPFASDDAVEFSDRSMEAACYYAYWASSKLAAERGHYASFKGSL 718

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           WD+G+ P D++ LL E R   + ++ +S L WD L+  +K  GMRNSNC+AIAPTATI+N
Sbjct: 719 WDRGILPQDTLALLREERGGYVEVDDSSTLDWDSLRAHIKQHGMRNSNCVAIAPTATISN 778

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P+Y+NLYVKSN+SG+FTVVN +LV +LK+R LWDE M+SDLKY DGS+  I
Sbjct: 779 IIGVSPCIEPNYRNLYVKSNLSGEFTVVNDYLVRDLKERKLWDEVMVSDLKYFDGSLARI 838

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +RIP DL+K++ATAFE+DP W++E A+RR KWIDQAQSLN+++   SGKKLD IY+ AW+
Sbjct: 839 DRIPADLRKLYATAFEVDPTWVVECAARRSKWIDQAQSLNIFMAGVSGKKLDDIYKLAWV 898

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-----------THSLGIPSS 943
            GLKTTYYLRS  AT+ EKST +G  G+LNAV     +               +  + + 
Sbjct: 899 RGLKTTYYLRSIGATNAEKSTGRG--GELNAVASGSTSPVAAAAAPAVAALPEAEVLGAV 956

Query: 944 CTSDT------ECEVCQ 954
           CT         ECE CQ
Sbjct: 957 CTMRPGDEGFEECEACQ 973


>gi|300703001|ref|YP_003744603.1| ribonucleoside-diphosphate reductase subunit alpha [Ralstonia
           solanacearum CFBP2957]
 gi|299070664|emb|CBJ41959.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           solanacearum CFBP2957]
          Length = 987

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/962 (56%), Positives = 683/962 (70%), Gaps = 42/962 (4%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
              ++I+RNG V  F+PSKI+ A+ KAF+AV G   + S RV+++++ LT+  V  LL+ 
Sbjct: 34  ADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRS 93

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +    HIED+QDQVE +LM+SG H + R YVLYRE RS  RA    +    P    L 
Sbjct: 94  RPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERAQAGET-QQQPAFIGLN 152

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +  D G     +   L  ++  AC+GL D V  + +L ET KN+Y+G+  S +  + I +
Sbjct: 153 VT-DGGITRPLDMAALRNLIVSACAGLGDTVDPEPILKETVKNLYEGVPMSQVYDSAILA 211

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +RTLIEK+P Y++ TAR LL  +RRE+L       ++ T  EM   Y +YF ++I+ G+ 
Sbjct: 212 ARTLIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGIN 265

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           A LL +++  FDL  L   L   RD  F YLGLQ LYDRYFLHI+  RIEMPQAFFMRVA
Sbjct: 266 AGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVA 325

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           MGL+L E ++E RA+EFY LLSSF FM STPTLFNSGT   QLSSC+LTTV DDL GI+ 
Sbjct: 326 MGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYE 385

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRK
Sbjct: 386 ALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRK 445

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N  WTLFSP 
Sbjct: 446 GAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPS 505

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
              DLHD  G+ FE AY  YE +  RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKD
Sbjct: 506 TCPDLHDKVGRAFEQAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKD 565

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDK 620
           PCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH           D+DK
Sbjct: 566 PCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDK 625

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  T+RTA+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ ALH+L IPYA+  AV
Sbjct: 626 LKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANDAAV 685

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739
           + AD SME + ++A  AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R   L  +
Sbjct: 686 QFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLETD 745

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +S + WD L+ R++  GMRNSNC+AIAPTATI+NI GVS  I+P+YQNLYVKSN+SG+F
Sbjct: 746 LSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEF 805

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           TVVN +LV +LK R LWDE M++DLKY DGS+  I+RIP DL+ ++ATAFE++P WL+E+
Sbjct: 806 TVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEA 865

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG- 918
           ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+  AT VEKST+   
Sbjct: 866 ASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925

Query: 919 --------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEV 952
                                    +A+      +        + CT         ECE 
Sbjct: 926 TLNAVSSGSDVGSVSAAGAAPVAPASALDAVAATAPAMPEAEGAVCTMRPGDPGFEECEA 985

Query: 953 CQ 954
           CQ
Sbjct: 986 CQ 987


>gi|167564162|ref|ZP_02357078.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           oklahomensis EO147]
          Length = 953

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/935 (58%), Positives = 688/935 (73%), Gaps = 23/935 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  +   A  + +  D+G     +   L  ++  AC GL D VS +
Sbjct: 131 REKRHLERVHAGEAADVETSAAGGINVT-DNGVTRPLDMSALHALIVSACEGLGDAVSPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            ++SET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVSETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV + A WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603

Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH A         D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS  AVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPVLRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRVPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           L GLKTTYYLR+ +AT VEKST+    G LNAVP 
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPT 936


>gi|295677727|ref|YP_003606251.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1002]
 gi|295437570|gb|ADG16740.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia
           sp. CCGE1002]
          Length = 1003

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/928 (60%), Positives = 691/928 (74%), Gaps = 24/928 (2%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
              +G +   P   Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G   + S
Sbjct: 21  GQTQGAQSLAPQANY------ADYKVIRRNGTVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74

Query: 66  IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            RV+++++ LT+  V  LL+   +    HIEDIQDQVE +LM+ G H + R YVLYRE+R
Sbjct: 75  ARVRELVEQLTQNVVRSLLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184
           +  RA   H  +DA   P L +  D+G     +   L  I+E AC+ L D VS++ +++E
Sbjct: 135 NQARAHDDH--ADAASTPGLNVT-DNGITRPLDMAALRGIIESACANLGDAVSAEPIVAE 191

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG+  S +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L       ++ T
Sbjct: 192 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
             EM   Y EYF ++I+ GV+A LL + ++ FDL  L   L   RD  F YLGLQ LYDR
Sbjct: 246 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YFLH +  RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR
Sbjct: 306 YFLHHDNVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV
Sbjct: 366 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+KI A  
Sbjct: 486 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQ 545

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS
Sbjct: 546 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 605

Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+AH           D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG
Sbjct: 606 VNLVAHLKEQADGTVALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLG 665

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ  LH+L  PYASPEAVE AD SME + ++A  AS ELA+ERG YSS++GSLWD+G
Sbjct: 666 IMGFQDCLHVLRTPYASPEAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRG 725

Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           + P DS+ LLAE R   + ++ +  + W  L+ R+ T GMRNSNC+AIAPTATI+NI GV
Sbjct: 726 ILPQDSVALLAEARGGYVEVDSSESMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGV 785

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++  I+RIP
Sbjct: 786 SACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 845

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DL+ I+ATAFE+DP+WL+ESASRRQKWIDQAQSLN+Y+   SGKKLD IY+ AWL GLK
Sbjct: 846 ADLRAIYATAFEVDPVWLVESASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLK 905

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           TTYYLR+ +AT VEKST+    G LNAV
Sbjct: 906 TTYYLRTMAATHVEKSTV--AHGALNAV 931


>gi|207721466|ref|YP_002251906.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
           solanacearum MolK2]
 gi|206586626|emb|CAQ17212.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia
           solanacearum MolK2]
          Length = 987

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/988 (55%), Positives = 687/988 (69%), Gaps = 48/988 (4%)

Query: 5   KDVNKGDEDAFPSLAYPFPEK--IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
                    + P+              ++I+RNG V  F+PSKI+ A+ KAF+AV G   
Sbjct: 10  SGTANPTAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S RV+++++ LT+  V  LL+   +    HIED+QDQVE +LM+SG H + R YVLYR
Sbjct: 70  AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181
           E RS  RA    ++   P    L +  D G     +   L  ++  AC+GL D V  + +
Sbjct: 130 ERRSQERAQAGETQQP-PAFIGLNVT-DGGITRPLDMVALRNLIVSACAGLGDAVDPEPI 187

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           L ET KN+Y+G+  S +  + I ++RTLIEK+P Y++ TAR LL  +RRE+L       +
Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           + T  EM   Y +YF ++I+ G+ A LL +++  FDL  L   L   RD  F YLGLQ L
Sbjct: 242 EVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTL 301

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYFLHI+  RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFNS
Sbjct: 302 YDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLFNS 361

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           GT   QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS
Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT
Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKRV +N  WTLFSP    DLHD  G+ FE AY  YE +  RGEI +F+K+ 
Sbjct: 482 ANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGRAFEQAYLGYEEKVARGEITLFKKMP 541

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCN
Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601

Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           LGS+NL+AH           D+DKL  T+R A+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 602 LGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMRMLDNVIDINYYAVKKARDSNLRHRPV 661

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGFQ ALH+L IPYA+  AV+ AD SME + ++A  AS ELA+ERG YS++KGSLW
Sbjct: 662 GLGVMGFQDALHVLRIPYANEAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+G+ P DS+ LLA+ R   L  + +S + WD L+ R++  GMRNSNC+AIAPTATI+NI
Sbjct: 722 DRGILPQDSLKLLAQERGGYLEADLSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATISNI 781

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+
Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL 
Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932
           GLKTTYYLR+  AT VEKST+    G LNAV                             
Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDAGSVSAAGAAPVAPASALDAVAAT 959

Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954
           +        + CT         ECE CQ
Sbjct: 960 APAMPEAEGAVCTMRPGDPGFEECEACQ 987


>gi|163854888|ref|YP_001629186.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           petrii DSM 12804]
 gi|163258616|emb|CAP40915.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           petrii]
          Length = 974

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/982 (54%), Positives = 693/982 (70%), Gaps = 39/982 (3%)

Query: 3   PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
            +   +     A P      P      +     VI+RNG V  F+PSKI+ A+ KAF+AV
Sbjct: 2   QTTIASVTRPSAVPPSQTDVPADANGGQWASYNVIRRNGSVVGFEPSKIAIAMTKAFLAV 61

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            G   + S RV+++++ L  Q V  L+++  +    HIEDIQDQVE +LM+SG H + R 
Sbjct: 62  NGGQGAASARVRELVETLASQAVNALVRNRPAGGTFHIEDIQDQVELALMRSGEHDVARA 121

Query: 118 YVLYREERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL 173
           YVLYRE+R+  RAA       +         L ++ D+G     +   L   +E A  GL
Sbjct: 122 YVLYREKRAQERAAAAEVLEKTAPAVAQESHLNVV-DNGVRRPLDLAALRATIEAAGEGL 180

Query: 174 QD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
            + + ++ +L ET KN+YDG+   ++  + I S+R L+EK+P Y++VTAR LL  +R+EV
Sbjct: 181 SEFIDTEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEV 240

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
           L       ++ +   M   Y EYF  +I+ G++  LL   + ++DL  +   L   RD  
Sbjct: 241 LG------EEVSQAGMATRYAEYFPTFIQRGIEGGLLDAKLAEYDLARVGAALDARRDLQ 294

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E+++E RA+EFY +LSSF FM
Sbjct: 295 FGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRESDREARAIEFYEILSSFDFM 354

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +
Sbjct: 355 SSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRS 414

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+
Sbjct: 415 HIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDE 474

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           RRRTHDMNTANWIPDLFMKRV +N  WTLFSP +  DLHD YGK FE AY  YE +   G
Sbjct: 475 RRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYLGYEAKVASG 534

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E+K+F+K+ A++LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+
Sbjct: 535 ELKLFKKMPAISLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNT 594

Query: 593 SSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           +  E AVCNLGS+NL+AH         + D+DKL  T+  A+R+LDNVIDIN + ++KAK
Sbjct: 595 NDSEIAVCNLGSVNLVAHMKPAAAGGFELDHDKLKRTVGIAMRMLDNVIDINYYAVKKAK 654

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            SN  HR +G+G+MGFQ  L ++ +PYAS  AVE AD SME + +HA  AS ELAQERG 
Sbjct: 655 DSNERHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSELAQERGR 714

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           Y S++GSLW +G+ P D++ +L + R   + ++ +S L W+ L+ R+K  GMRNSNC+AI
Sbjct: 715 YPSYEGSLWSRGILPQDTLAMLRDERGGHVEVDESSTLDWNALRARIKEHGMRNSNCIAI 774

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTATI+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY
Sbjct: 775 APTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKY 834

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            DGS+  I+R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD
Sbjct: 835 FDGSLSRIDRVPSELRELYATAFEVEPRWLVECASRRQKWIDQAQSLNIYMAGASGKKLD 894

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSL 938
             Y+ AW  GLKTTYYLR+  ATS EKST +G  G+LNAV      ++            
Sbjct: 895 DTYKLAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGQAATAVTAAAPNLPEPE 952

Query: 939 GIPSSCTSDT------ECEVCQ 954
            + + CT         ECE CQ
Sbjct: 953 VLGAVCTMRPGDPGFEECEACQ 974


>gi|221065169|ref|ZP_03541274.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
           testosteroni KF-1]
 gi|220710192|gb|EED65560.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas
           testosteroni KF-1]
          Length = 969

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/968 (54%), Positives = 684/968 (70%), Gaps = 32/968 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
             A P+ A          Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D 
Sbjct: 9   PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  LT+  V  L++        HIED+QDQVE  LM++GH  + R YVLYRE R+  RA 
Sbjct: 69  VNELTDGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128

Query: 132 QSHSKSDAP---IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187
           Q      A      P L +  D+G  +  N +RLE ++  +C  L  D+ S  +++ET +
Sbjct: 129 QKKVAEVAAAAATKPVLHVT-DNGQRVPLNQERLEALIVASCGNLNADIQSAPIVAETLR 187

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  +++  A I ++RTLIEK+P+Y  VTAR LL  + REV+       +     E
Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQPAE 241

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           MQ  Y +YF  ++++GV   LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFL
Sbjct: 242 MQAAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H+  +RIE+PQ+FFMRVAMGLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   Q
Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF
Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP +  DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWR
Sbjct: 482 LFMKRVMEAGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL
Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           + H  + + D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL
Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + +   YAS  AVE ADE+ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ 
Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL + R   + ++R+++L WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+
Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAKDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++A
Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ 
Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901

Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           SAT++EKST++                                   +   +  I      
Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 962 DPGCEACQ 969


>gi|299533978|ref|ZP_07047330.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
           testosteroni S44]
 gi|298717887|gb|EFI58892.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas
           testosteroni S44]
          Length = 969

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 531/968 (54%), Positives = 686/968 (70%), Gaps = 32/968 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
             A P+ A          Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D 
Sbjct: 9   PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  LTE  V  L++        HIED+QDQVE  LM++GH  + R YVLYRE R+  RA 
Sbjct: 69  VNELTEGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128

Query: 132 QSHSKSDAPIA---PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187
           Q  +   A  A   P L +  D+G  +  + +RLE ++  +C  L  D+ S  +++ET +
Sbjct: 129 QKKAAEVAAAAAAKPVLHVT-DNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLR 187

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  +++  A I ++RTLIEK+P+Y  VTAR LL  + REV+       +     E
Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQPAE 241

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           MQ  Y +YF  ++++GV   LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFL
Sbjct: 242 MQTAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H+  +RIE+PQ+FFMRVAMGLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   Q
Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF
Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP +  DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWR
Sbjct: 482 LFMKRVMEKGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL
Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           + H  + + D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL
Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + +   YAS  AVE ADE+ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ 
Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL + R   + ++R+++L WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+
Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++A
Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ 
Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901

Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           SAT++EKST++                                   +   +  I      
Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 962 DPGCEACQ 969


>gi|264680214|ref|YP_003280124.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
           CNB-2]
 gi|262210730|gb|ACY34828.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni
           CNB-2]
          Length = 969

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 531/968 (54%), Positives = 686/968 (70%), Gaps = 32/968 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
             A P+ A          Q+I+R+G V +F P KI+ A+ KAF+AV G   + S  V+D 
Sbjct: 9   PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  LTE  V  L++        HIED+QDQVE  LM++GH  + R YVLYRE R+  RA 
Sbjct: 69  VNELTEGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128

Query: 132 QSHSKSDAPIA---PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187
           Q  +   A  A   P L +  D+G  +  + +RLE ++  +C  L  D+ S  +++ET +
Sbjct: 129 QKKAAEVAAAAAAKPVLHVT-DNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLR 187

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N+YDG+  +++  A I ++RTLIEK+P+Y  VTAR LL  + REV+       +     E
Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQPAE 241

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           MQ  Y +YF  ++++GV   LL+  ++++DL  LA  LK ERD  F+YLGLQ LYDRYFL
Sbjct: 242 MQAAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H+  +RIE+PQ+FFMRVAMGLAL E ++  RA+EFY LLSSF FM STPTLFNSGT   Q
Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF
Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD
Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV +   WTLFSP +  DLHDLYG+ FE AY  YE + D GE+K+F+++ AV LWR
Sbjct: 482 LFMKRVMEAGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETAVCNLGS+NL
Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           + H  + + D+DKL  T+ TA+R+LDNVIDIN + ++KAK SN  HR +G+GLMGFQ AL
Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + +   YAS  AVE ADE+ME I ++A  AS EL++ERG YS+FKGSLWDQG+ P D++ 
Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LL + R   + ++R+++L WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+PS+
Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P ++K ++A
Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKL   Y  AWL GLKTTYYLR+ 
Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901

Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           SAT++EKST++                                   +   +  I      
Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961

Query: 947 DTECEVCQ 954
           D  CE CQ
Sbjct: 962 DPGCEACQ 969


>gi|167837967|ref|ZP_02464826.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia
           thailandensis MSMB43]
          Length = 956

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/936 (58%), Positives = 690/936 (73%), Gaps = 23/936 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P     +G         Y         +VI+RNG V SF+PSKI+ A+ KAF+AV G  
Sbjct: 17  RPLAGGAQGAPALALQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT+  V  L++   +    HIEDIQDQVE +LM+ G H + R YVLY
Sbjct: 71  GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130

Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179
           RE+R   R  A   +  ++  A  + +  D+G   + +   L  ++  AC GL D V+ +
Sbjct: 131 REKRHLERVHAGEAAAVESSAAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVNPE 189

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
            +++ET KN+YDG+  + +  + I ++RT+IEK+P Y++VTAR LL  +RRE+L      
Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARVLLHTIRREILG----- 244

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
            ++ T  EM   Y EYF ++++ GV+A LL + ++ FDL  L + L   RD  F YLGLQ
Sbjct: 245 -EEVTQAEMATRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF
Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           NSGTR  QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG
Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM
Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           NTANWIPDLFMKRV +   WTLFSP    DLHD +G EFE AY  YE +  RGEIK+F+K
Sbjct: 484 NTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AV
Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAV 603

Query: 600 CNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           CNLGS+NL+AH           D +KL  T+  A+R+LDNVIDIN + + KA+ SN  HR
Sbjct: 604 CNLGSVNLVAHLAKQADGTYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGFQ  LHLL  PYAS EAVE AD SME + ++A  AS ELA+ERG YSS++GS
Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASGEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723

Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           LWD+G+ P D++ LL E R   + ++ ++ L W  L+ R+ + GMRNSNC+AIAPTATI+
Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG +  
Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD +Y+ AW
Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 903

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           L GLKTTYYLR+ +AT VEKST+    G LNAVP +
Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTS 937


>gi|54294661|ref|YP_127076.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Lens]
 gi|53754493|emb|CAH15977.1| hypothetical protein lpl1738 [Legionella pneumophila str. Lens]
          Length = 942

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/928 (60%), Positives = 692/928 (74%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 27  LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K        L I 
Sbjct: 87  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K  +AT  EM  +YP YF  YIE+G+   +
Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 265 LDPKMTDFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + I AV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTIPAVKLWRRMLSMLFETGHPWLTFKDPCN 564

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH  N + D  KL  TI TA
Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 625 IRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R   L  +R+ +L W+
Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIP++LK  +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKSRYATSFEIDPMWLVEAASRRQKWI 864

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922

Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           + D          P +C+  D +CE CQ
Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942


>gi|294339030|emb|CAZ87377.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
           diphosphate reductase, alpha subunit) (Ribonucleotide
           reductase large subunit) [Thiomonas sp. 3As]
          Length = 974

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/955 (57%), Positives = 686/955 (71%), Gaps = 31/955 (3%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
                   ++I+RNG V  F+PSKI+ A+ KAF+AV+G   + S  +++ +  LTE  V 
Sbjct: 29  ALGDFSDYKIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVR 88

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            LL+   S    HIEDIQDQVE SLM++G H++ R YVLYRE R+  RA Q  +      
Sbjct: 89  ALLRSRPSGGTFHIEDIQDQVELSLMRTGQHEVARAYVLYRERRTQERAKQKAAAEQQES 148

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLET 200
           AP L ++ D G     +   L  ++E AC  L  DV +  +++ET +N+YDG+   ++  
Sbjct: 149 APVLHVL-DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYK 207

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           A I +SRTLIE++P+Y+KVTAR LL  +RRE L       +     +M   Y EYF R I
Sbjct: 208 AAILASRTLIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCI 261

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--------LHINGS 312
           +EGV+  LL E +  FDL  L   LK ERD  F+YLGLQ LYDRYF        ++ +G 
Sbjct: 262 KEGVELELLDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGR 321

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR  QLSSC+
Sbjct: 322 RIELPQAFFMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCY 381

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV N
Sbjct: 382 LTTVADDLDGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVN 441

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR
Sbjct: 442 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 501

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +   WTLFSP +V DLHD +GK+FE AY  YE++A  GEIK+F+ + AV LWRKML+M
Sbjct: 502 VMEGGDWTLFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSM 561

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH  
Sbjct: 562 LFETGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLK 621

Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +        D  KL  TI+TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  L
Sbjct: 622 DAADGAKVIDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCL 681

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + L IPY S +AVE AD SME + + A  AS ELA+ERG YSS+ GSLWDQGV P+DS+ 
Sbjct: 682 YQLRIPYGSQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGVLPMDSLK 741

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LLAE R   +  + +S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV   I+P++
Sbjct: 742 LLAEQRGGYVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTF 801

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY DGS   I+RIP DLK +++
Sbjct: 802 QNLYVKSNLSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYS 861

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE D  W+IE+A+RRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+ 
Sbjct: 862 TAFETDTQWIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTI 921

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL-------GIPSSCTSDTECEVCQ 954
            AT  EKST+K   G+LNAVP +   S++ S         I      + ECE CQ
Sbjct: 922 GATHAEKSTVKA--GQLNAVPQSPSESASASAQAVVQSGDIRYCAIDNPECEACQ 974


>gi|52842001|ref|YP_095800.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|296107365|ref|YP_003619065.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|52629112|gb|AAU27853.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|295649266|gb|ADG25113.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610474|emb|CBX00046.1| hypothetical protein LPW_18011 [Legionella pneumophila 130b]
          Length = 942

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/928 (60%), Positives = 694/928 (74%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 27  LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K        L I 
Sbjct: 87  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K  +AT  EM  +YP YF  YIE+G+   +
Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + ISAV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH  N + D  KL  TI TA
Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R   L  +R+ +L W+
Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 805 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 864

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922

Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           + D          P +C+  D +CE CQ
Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942


>gi|300784784|ref|YP_003765075.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
 gi|299794298|gb|ADJ44673.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
          Length = 972

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 570/975 (58%), Positives = 707/975 (72%), Gaps = 37/975 (3%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
                      +    ++VI+R+G V+ FD  KIS A+ KAF+AVEG  A+ S RV  ++
Sbjct: 2   SVETGQRPSAADTPTAIRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVV 61

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             LT+Q  T LL+H      +HIE IQD VE +LM+  HHK+ R YVLYR+ER+  R A 
Sbjct: 62  AELTQQVETTLLRHAGPETALHIEQIQDIVELALMRGEHHKVARAYVLYRDERAKAREAV 121

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
             + ++A     L +   DG L   +  R+  +V EA +GL+DV+++ VL+E  +N+YDG
Sbjct: 122 KPATTEA----TLNVKGTDGVLRPLDWARVSHVVGEAVAGLEDVTAEPVLAEAKRNLYDG 177

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S  +L  A I ++R L+E+EPNY+ V+AR LL+KLR E L+ +   P+ A+  EM   Y
Sbjct: 178 ISADELALAQIMAARVLVEQEPNYSYVSARLLLDKLRGEALSYLAGTPRLASQDEMAAEY 237

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           P YF  Y+   ++  L+   +  FDL  +   ++ ERD  F +LGLQ LYDRYF H +G+
Sbjct: 238 PAYFRAYLRRAIELELVDAELQRFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHDGT 297

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           R E+PQAFFMRVAMGLA++E ++E RA+EFY LLSSFHFM STPTLFNSGT  PQLSSCF
Sbjct: 298 RFELPQAFFMRVAMGLAIREGDREARAIEFYELLSSFHFMASTPTLFNSGTTRPQLSSCF 357

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL  IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+AN
Sbjct: 358 LTTVDDDLDSIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIAN 417

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++R
Sbjct: 418 DTAVAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRR 477

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +A WTLFSP+E  DLHDLYG EF   Y  YE  ADRGEIKVFR+  AV LWR+MLTM
Sbjct: 478 VEADAQWTLFSPNETPDLHDLYGNEFATRYREYEAAADRGEIKVFRRARAVDLWRRMLTM 537

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++SEE AVCNLGS+NLL H  
Sbjct: 538 LFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNSEEVAVCNLGSVNLLKHVT 597

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L  T+RTAVR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ AL  + +
Sbjct: 598 PEGLDTKRLEKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFEIGV 657

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+AS EAV+ AD SME +S++AISAS +LA+ERG Y SF+GSLW +G+ PIDS+ LL + 
Sbjct: 658 PFASEEAVKFADVSMEHLSYYAISASTDLAEERGQYQSFEGSLWSKGILPIDSLQLLIDA 717

Query: 733 R--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R  D L ++ +S L W  L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNL+
Sbjct: 718 RQGDGLDVDTSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLF 777

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKSNMSGDFTVVN  LV  LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE
Sbjct: 778 VKSNMSGDFTVVNPHLVRSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFE 837

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           I+  W++++ S RQKWIDQAQSLNLY+  PSG+KLD +YR AW  GLKTTYYLR++SAT 
Sbjct: 838 IESKWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKTTYYLRAQSATH 897

Query: 911 VEKSTLKGVDGKLNAVP-------------------------------VTDPNSSTHSLG 939
           VEKSTL+G DGKLNAV                                  +P+    +  
Sbjct: 898 VEKSTLRGTDGKLNAVSATPAPAAPAAAAPAPAPTPTPAPAPAPSPSPKPEPDVDFVATE 957

Query: 940 IPSSCTSDTECEVCQ 954
             +    D +CE CQ
Sbjct: 958 GAACRIDDPDCEACQ 972


>gi|187479452|ref|YP_787477.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           avium 197N]
 gi|115424039|emb|CAJ50592.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella avium
           197N]
          Length = 970

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 538/971 (55%), Positives = 699/971 (71%), Gaps = 29/971 (2%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           ++      E      +     +     +I+RNG V  F+P KI+ A+ KAF+AV G   +
Sbjct: 9   TRSTAVPPESNEGQASISHAGQWASYNLIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGA 68

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S RV++++  LTEQ V  L+++  S    HIED+QDQVE SLM+SG H + R YVLYRE
Sbjct: 69  ASARVRELVGQLTEQVVNALVRNRPSGGTFHIEDVQDQVELSLMRSGQHDVARAYVLYRE 128

Query: 124 ERSDVRAAQS--HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
            R+  RAA +    K+  P  P L +  D+G     +  +L   +E A  GL + + ++ 
Sbjct: 129 RRAQERAAAAEVQDKAAVPAEPTLNV-NDNGVRRPLDMAQLRATIEAAGVGLTEFIDTET 187

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L ET KN+YDG+   ++  + I ++R L+EK+P Y++VTAR LL  +R+EVL       
Sbjct: 188 ILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG------ 241

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++ +   M   Y  YF  +I+ G++A LL   + +FDL  +A  L   RD  F YLGLQ 
Sbjct: 242 EEVSQASMAERYATYFPTFIQRGIEAGLLDAKLAEFDLERIARALNANRDLQFGYLGLQT 301

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E+++E RA+EFY +LSSF FM STPTLFN
Sbjct: 302 LYDRYFLHVRGTRIELPQVFFMRVAMGLALRESDREARAIEFYEILSSFDFMSSTPTLFN 361

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+
Sbjct: 362 SGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGE 421

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMN
Sbjct: 422 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMN 481

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRV +N  WTLFSP +  DLHD YG+ FE AY  YE +A  GE+K+F+K+
Sbjct: 482 TANWIPDLFMKRVVENGDWTLFSPSDCPDLHDKYGRAFEQAYLGYEAKAASGELKLFKKM 541

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A++LWRKML+MLFETGHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN++  E AVC
Sbjct: 542 PAISLWRKMLSMLFETGHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNTNESEIAVC 601

Query: 601 NLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           NLGS+NL+AH         + D+DK+  T+  A+R+LDNVIDIN + +EKA+ SN  HR 
Sbjct: 602 NLGSVNLVAHMKPSANGGYELDHDKIKHTVGIAMRMLDNVIDINYYAVEKARNSNLRHRP 661

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGFQ  LH++ +PYAS  A+E AD SME + + A  AS  LA+ERG Y S++GSL
Sbjct: 662 VGLGIMGFQDCLHMMRVPYASQAAIEFADRSMEAVCYQAYWASSTLAEERGRYPSYEGSL 721

Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           W +G+ P DSI +L + R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTATI+N
Sbjct: 722 WSRGILPQDSIAMLRDERGGNVDVDESSSLDWDTLRARIKAHGMRNSNCVAIAPTATISN 781

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS+  I
Sbjct: 782 IIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRI 841

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           +R+P +L++++ATAFE++P WL+E A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW 
Sbjct: 842 DRVPTELRELYATAFEVEPSWLVECAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQ 901

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-----THSLGIPSSCTSDT- 948
            GLKTTYYLR+  ATS EKST +G  G+LNAV   + ++S          + ++CT    
Sbjct: 902 RGLKTTYYLRTMGATSAEKSTGRG--GELNAVSAGNHSASAAPVLPEPEVVGAACTMRPG 959

Query: 949 -----ECEVCQ 954
                ECE CQ
Sbjct: 960 DPGFEECEACQ 970


>gi|54297687|ref|YP_124056.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Paris]
 gi|53751472|emb|CAH12890.1| hypothetical protein lpp1738 [Legionella pneumophila str. Paris]
          Length = 942

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/928 (60%), Positives = 694/928 (74%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 27  LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K        L I 
Sbjct: 87  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 145

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K  +AT  EM  +YP YF  YIE+G+   +
Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 264

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + ISAV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGS+NL AH  N + D  KL  TI TA
Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSVNLPAHIKNGKLDEQKLKRTISTA 624

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R   L  +R+ +L W+
Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIP++LK+ +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRRQKWI 864

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922

Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           + D          P +C+  D +CE CQ
Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942


>gi|148359318|ref|YP_001250525.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Corby]
 gi|148281091|gb|ABQ55179.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila str. Corby]
          Length = 917

 Score =  967 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/928 (60%), Positives = 694/928 (74%), Gaps = 14/928 (1%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++ IKRNG V  +D +KI  AI KAF+A EG  A  S R+   I+ LT Q      +   
Sbjct: 2   LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +HIE+IQDQVE +LM+SGH+K+ R YVLYREER   R ++S  K        L I 
Sbjct: 62  SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 120

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           M +G +   +  R+  IV+E+C  L +V ++ V+ +  +N+Y+     D+  ALI S+R 
Sbjct: 121 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 180

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+EKEPNY  V+AR LL+ LR E LT +  K  +AT  EM  +YP YF  YIE+G+   +
Sbjct: 181 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 239

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   M DFDL  L+  L  ERD  F YL LQ LYDRYF+H  G R E+PQAFFMRVAMGL
Sbjct: 240 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 299

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E  KE++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTVPD L GI+ A++
Sbjct: 300 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 359

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV
Sbjct: 360 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 419

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++  WTLFSPDEV 
Sbjct: 420 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 479

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD YGK FE  Y  YE +A +G I+  + ISAV LWR+ML+MLFETGHPW+TFKDPCN
Sbjct: 480 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 539

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH  N + D  KL  TI TA
Sbjct: 540 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 599

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +++ +A+ SN  HR IGLG+MGFQ AL+ L + YAS EA+E AD SME
Sbjct: 600 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 659

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747
            IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R   L  +R+ +L W+
Sbjct: 660 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 719

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV
Sbjct: 720 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 779

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK  +LWDE M++DLKY +GS+  I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI
Sbjct: 780 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 839

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLN+Y+ +PSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST+   DG LNAV 
Sbjct: 840 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 897

Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           + D          P +C+  D +CE CQ
Sbjct: 898 LIDTE--------PKACSITDPDCEACQ 917


>gi|253997286|ref|YP_003049350.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
           mobilis JLW8]
 gi|253983965|gb|ACT48823.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
           mobilis JLW8]
          Length = 938

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/947 (59%), Positives = 698/947 (73%), Gaps = 22/947 (2%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
             S        +  +QVI+RNG   +F+  KIS AI KAF+AVEG  ++ S RV+D + +
Sbjct: 7   SSSTDSVQATMLPMLQVIRRNGAAVTFNLDKISIAITKAFLAVEGNHSAASQRVRDQVTS 66

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           L++     L++   +   +HIEDIQDQVE +LM++G+H + R YVLYRE+R+  RAA+  
Sbjct: 67  LSQIVNHALIRRLPTGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKA 126

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGL 193
           + S+   A  + I   DG L+  N K+L  +V EAC  L  +V   +V+ +  +++YDG+
Sbjct: 127 TTSEPSHALNVNI---DGKLVPLNIKQLNEMVAEACLNLGNEVDVNLVVEQAVRDLYDGI 183

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             +++  ALI S+R+LIE EP Y  VTAR  L+ +R EVL       ++ +H EM   Y 
Sbjct: 184 PFTEVYKALILSARSLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAEMDAHYA 237

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           EYF RYI+ G+ A LL   +  FDL  LAN L  ERDF F YLG+Q LYDRYFLHI   R
Sbjct: 238 EYFPRYIKIGIDADLLDPRLAQFDLDKLANALVKERDFQFGYLGIQTLYDRYFLHIEERR 297

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           IE+PQ FFMRVAMGLA+ E ++E RA+EFYN+LS+F FM STPTLFN+GT H QLSSC+L
Sbjct: 298 IELPQIFFMRVAMGLAINEIDREARAIEFYNVLSTFDFMSSTPTLFNAGTLHSQLSSCYL 357

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           TTV DDL GI+  ++ENA+L KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV ND
Sbjct: 358 TTVSDDLDGIYQGIKENALLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVND 417

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAVNQGGKRKGAVC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RV
Sbjct: 418 TAVAVNQGGKRKGAVCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRV 477

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           T+   WTLFSP +V DLHD YGK FE AY  YER+AD GEIK+F+++ A+ +WRKML+ML
Sbjct: 478 TEQGEWTLFSPSDVPDLHDKYGKAFEKAYVEYERRADTGEIKLFKRVPAIQMWRKMLSML 537

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NLL H   
Sbjct: 538 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLLQHLKE 597

Query: 614 NQF----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  D DKL +TI+  +R+LDNV+DIN + + KA+ SN  HR +G+G+MGFQ+ LH 
Sbjct: 598 VNGNLELDNDKLQATIKVGMRMLDNVVDINFYPVGKARNSNTRHRPVGMGIMGFQNCLHA 657

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + IPYAS +AVE AD +ME + ++A  AS  LA+ERG YSSFKGSLWDQG+ P+D++ LL
Sbjct: 658 MRIPYASMDAVEFADRAMEMVCYNAYWASTVLAEERGPYSSFKGSLWDQGILPLDTLNLL 717

Query: 730 AEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
              R   + ++R+  L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQN
Sbjct: 718 EAERGGNVEVDRSKTLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQN 777

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSN+SG+FT+VN  LVN+LK R LWD  M+SDLKY DGS+  IER+P DLK+++ATA
Sbjct: 778 LYVKSNLSGEFTIVNEQLVNDLKARGLWDTVMVSDLKYFDGSLAPIERVPADLKQLYATA 837

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           F++DP WLIE+A+RRQKWIDQAQSLNLY   PSGKKL+  Y  AW  GLKTTYYLRS  A
Sbjct: 838 FDVDPSWLIEAAARRQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSLGA 897

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           T+ EKST  G  G+LNAV       +T     P  C+ D  +CE CQ
Sbjct: 898 TAAEKST--GSGGELNAVSA----HTTAPEPAPKMCSIDNPDCESCQ 938


>gi|241764093|ref|ZP_04762130.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           delafieldii 2AN]
 gi|241366557|gb|EER61045.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax
           delafieldii 2AN]
          Length = 975

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 540/984 (54%), Positives = 693/984 (70%), Gaps = 39/984 (3%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
           M  + +       A  +LA   PE    +   Q+I+RNG V  F+P KI+ A+MKAF+AV
Sbjct: 1   MQAALNTPPSHTAASQALAPNAPEASHVLNHYQIIRRNGAVVPFEPQKIAVAMMKAFLAV 60

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
            G   + S  V++++  LT      L++        HIED+QDQVE  LM+SGHH+I R 
Sbjct: 61  HGTQGAASASVREVVDTLTHNVTRALMRSRPGGGTFHIEDVQDQVELGLMRSGHHEIARA 120

Query: 118 YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DV 176
           YVLY       +    H++   P AP+L ++ D G  +  +  RL+ ++E AC+GL  DV
Sbjct: 121 YVLY--RERRTQERTRHNEEQLPQAPQLHVL-DGGERVVLDQGRLQSLIESACTGLGADV 177

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
           S++ +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL   
Sbjct: 178 SAQPIVAETMRNLYDGVPMEEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLG-- 235

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
               ++    +M   Y +YF ++I++GV+  LL E ++ +DL  L   LK ERD  F+YL
Sbjct: 236 ----REVAPADMAQSYVDYFPQFIKKGVENDLLDERLLQYDLQRLGAALKAERDLQFDYL 291

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH+  +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STP
Sbjct: 292 GLQTLYDRYFLHVKKNRIELPQAFFMRVAMGLSLNEIDREARAIEFYEILSSFDFMSSTP 351

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI G
Sbjct: 352 TLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKG 411

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRT
Sbjct: 412 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRT 471

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G +FE AY  YE +A RGEIK 
Sbjct: 472 HDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGTDFEKAYVAYEEKAARGEIKP 531

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R + A  LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  E
Sbjct: 532 ARTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTE 591

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           TAVCNLGS+NLL H  N Q D+DKL  TI  A+R+LDNVIDIN + ++KA+ SN  HR +
Sbjct: 592 TAVCNLGSVNLLQHLKNGQIDHDKLKKTITVAMRMLDNVIDINYYAVKKARDSNLRHRPV 651

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+M FQ +L+ L IPYAS EAVE AD+SME I ++A  AS ELA+ERG YSS+KGSLW
Sbjct: 652 GLGVMAFQDSLYELRIPYASQEAVEFADQSMEAICYYAYWASTELARERGRYSSYKGSLW 711

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           D+G+ P+D++ +LA+ R   + ++R++ L WD L+K++   GMRNSNC+AIAPTATI+NI
Sbjct: 712 DRGILPLDTLDMLAQARGGYVEVDRSATLDWDALRKKIAQDGMRNSNCVAIAPTATISNI 771

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GV  SI+PS+ NL VKSN+SG+FTV+N  LV +LK+  LWD+ MI DLK+  GS+  I+
Sbjct: 772 IGVDASIEPSFGNLSVKSNLSGEFTVINGGLVRDLKRLGLWDDVMIMDLKHFKGSLHPID 831

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           R+P D+K +++TAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ 
Sbjct: 832 RVPQDIKALYSTAFEVEPRWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVR 891

Query: 896 GLKTTYYLRSRSATSVEKSTLKG------VDGKLNAVPVTDPNSSTHSL----------- 938
           GLKTTYYLR++SAT VE ST+          G  N         S               
Sbjct: 892 GLKTTYYLRTQSATHVEMSTVNTRQLNAVSSGHDNGGSHASAAQSAPPSTMEAAIAAAAL 951

Query: 939 --------GIPSSCTSDTECEVCQ 954
                    I      D  CE CQ
Sbjct: 952 QAAELPATDIKFCAIDDPTCEACQ 975


>gi|296135013|ref|YP_003642255.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas
           intermedia K12]
 gi|295795135|gb|ADG29925.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas
           intermedia K12]
          Length = 978

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/959 (57%), Positives = 685/959 (71%), Gaps = 35/959 (3%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
                   ++I+RNG V  F+PSKI+ A+ KAF+AV+G   + S  +++ +  LTE  V 
Sbjct: 29  ALGDFSDYKIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVR 88

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            LL+   S    HIEDIQDQVE SLM++G H++TR YVLYRE R+  RA Q  +      
Sbjct: 89  ALLRSRPSGGTFHIEDIQDQVELSLMRTGQHEVTRAYVLYRERRTQERAKQKAAAEQQES 148

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLET 200
           AP L ++ D G     +   L  ++E AC  L  DV +  +++ET +N+YDG+   ++  
Sbjct: 149 APVLHVL-DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYK 207

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           A I +SRTLIE++P+Y+KVTAR LL  +RRE L       +     +M   Y EYF R I
Sbjct: 208 ASILASRTLIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCI 261

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--------LHINGS 312
           +EGV+  LL E +  FDL  L   LK ERD  F+YLGLQ LYDRYF        ++ +G 
Sbjct: 262 KEGVELELLDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGR 321

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR  QLSSC+
Sbjct: 322 RIELPQAFFMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCY 381

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTV DDL GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV N
Sbjct: 382 LTTVADDLDGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVN 441

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR
Sbjct: 442 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 501

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V +   WTLFSP +V DLHD +GK+FE AY  YE++A  GEIK+F+ + AV LWRKML+M
Sbjct: 502 VMEGGEWTLFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSM 561

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH  
Sbjct: 562 LFETGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLK 621

Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +        D  KL  TI+TA+R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  L
Sbjct: 622 DAADGAKVIDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCL 681

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + L IPY S +AVE AD SME + + A  AS ELA+ERG YSS+ GSLWDQG+ P+DS+ 
Sbjct: 682 YQLRIPYGSQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGILPMDSLK 741

Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           LLAE R   +  + +S L W+ L+ ++   GMRNSNC+AIAPTATI+NI GV   I+P++
Sbjct: 742 LLAEQRGGYVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTF 801

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNLYVKSN+SG+FTV+N +LV +LK R LWD  M++DLKY DGS   I+RIP DLK ++A
Sbjct: 802 QNLYVKSNLSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYA 861

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE D  W+IE+A+RRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL GLKTTYYLR+ 
Sbjct: 862 TAFETDTQWIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTI 921

Query: 907 SATSVEKSTLKGVDGKLNAVPVTD-----------PNSSTHSLGIPSSCTSDTECEVCQ 954
            AT  EKST+K   G+LNAVP +              +   S  I      + ECE CQ
Sbjct: 922 GATHAEKSTVKA--GQLNAVPQSPSESVSALASASAQAVVQSGDIRYCAIDNPECEACQ 978


>gi|121608467|ref|YP_996274.1| ribonucleotide-diphosphate reductase subunit alpha
           [Verminephrobacter eiseniae EF01-2]
 gi|121553107|gb|ABM57256.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 968

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/974 (54%), Positives = 683/974 (70%), Gaps = 38/974 (3%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           H      +    A P  A      ++  Q+++RNG V  F P KI+ A+MKAF+AV G  
Sbjct: 12  HTLPADVQAKPAAAPDHA------LEHYQIMRRNGAVVPFQPQKIALAMMKAFLAVHGTQ 65

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S  V++++  LT+     L++        HIED+QDQVE  LM+ GHH+I R YVLY
Sbjct: 66  GAASASVREVVDGLTQTVTRALMRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARSYVLY 125

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
           RE R+  R+ Q       P A  L ++   G  ++ +  RL+ ++E AC GL  DV +  
Sbjct: 126 RERRTQERSRQG--SPQQPAAALLHVLDA-GVRVALDPARLQALIESACVGLGPDVKADP 182

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +++ET +N+YDG+   ++  A I ++RTLIEK+P+Y+  TAR LL  + REVL +     
Sbjct: 183 IVAETMRNLYDGVPMDEVCKAAILAARTLIEKDPDYSYATARLLLHTIVREVLGSDVP-- 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
                 +M   Y +YF R+I++GV   LL E ++ +DL  L   ++ ERD  F+YLGLQ 
Sbjct: 241 ----QAQMALAYGDYFPRFIKKGVDNGLLDERLLQYDLQRLGAAIRAERDLKFDYLGLQT 296

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+  +RIE+PQ FFMRVAMGLAL E E+E RA+EFY +LSSF FM STPTLFN
Sbjct: 297 LYDRYFLHVRKTRIELPQVFFMRVAMGLALNEVEREARAIEFYEVLSSFDFMSSTPTLFN 356

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG++I GTNG+
Sbjct: 357 SGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSYIAGTNGE 416

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 417 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMN 476

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFM RV +   WTLFSP  V DLH+L+G +FE AY  YE QA RG I   R +
Sbjct: 477 TANWIPDLFMHRVMEKGHWTLFSPSSVPDLHELFGADFEKAYVAYEEQAARGAIGPARTV 536

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S  ETAVC
Sbjct: 537 QATDLWRKMLTMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSDSETAVC 596

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NLL H  + Q D+DKL  TI  A+R+LDNVIDIN + + KA+ SN  HR +GLG+
Sbjct: 597 NLGSVNLLQHLKDGQIDHDKLRQTITVAMRMLDNVIDINYYAVRKARDSNLRHRPVGLGV 656

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M FQ  L+ L IPYAS  AVE AD+SME I ++A  AS ELA+ERG Y S++GSLW++G 
Sbjct: 657 MAFQDCLYELRIPYASQAAVEFADQSMEAICYYAYWASTELAKERGKYLSYEGSLWERGQ 716

Query: 721 FPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            P+D++ LLA+ R   L ++R+SRL WD L++++   GMRNSNC+AIAPTATI+NI GV 
Sbjct: 717 LPLDTLDLLAQARGDYLQVDRSSRLDWDALRQKIAQDGMRNSNCVAIAPTATISNIVGVD 776

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI+PS+ NL VKSN+SG+FTV+N+ LV +LK+  LWDE MI DLK+  GS+  I+R+P 
Sbjct: 777 ASIEPSFGNLSVKSNLSGEFTVINAGLVRDLKRLGLWDEVMIMDLKHFKGSLHPIDRVPQ 836

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           D+K +++TAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+   SG+KLD  Y+ AW+ GLKT
Sbjct: 837 DIKALYSTAFEVDPQWLVEAASRRQKWIDQAQSLNIYMAGASGRKLDETYKLAWVRGLKT 896

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPV-------------------TDPNSSTHSLGI 940
           TYYLR++SAT VE ST+    G+LNAV                             +  I
Sbjct: 897 TYYLRTQSATHVEMSTVN--TGQLNAVSSGPHGDAFGAAATSTPMSTAAAQAGDRPATDI 954

Query: 941 PSSCTSDTECEVCQ 954
                 +  CE CQ
Sbjct: 955 AFCALDNPTCEACQ 968


>gi|33598410|ref|NP_886053.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           parapertussis 12822]
 gi|33603350|ref|NP_890910.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           bronchiseptica RB50]
 gi|33574539|emb|CAE39186.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           parapertussis]
 gi|33577474|emb|CAE34739.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica RB50]
          Length = 975

 Score =  962 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 544/979 (55%), Positives = 700/979 (71%), Gaps = 39/979 (3%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P+       E +      P   +     +I+RNG V  F+PSKI+ A+ KAF+AV G  
Sbjct: 10  RPTAVPPAQSETS----TDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQ 65

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT Q V+ L+++  +    HIED+QDQVE +LM+SG H + R YVLY
Sbjct: 66  GAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLY 125

Query: 122 REERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176
           RE R+  RAA       S   A   P L ++ D+G     +   L   +E A  GL Q  
Sbjct: 126 RERRAQERAAAAEVLEKSSPAAAQEPTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYT 184

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
            ++ +L ET KN+YDG+   ++  + I ++R L+EK+P Y++VTAR LL  +R+EVL   
Sbjct: 185 DTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG-- 242

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
               ++ +  +M   Y EYF  +I+ G++  LL   + ++DL  +A  L   RD  F YL
Sbjct: 243 ----EEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYL 298

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STP
Sbjct: 299 GLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTP 358

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI G
Sbjct: 359 TLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKG 418

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRT
Sbjct: 419 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRT 478

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANWIPDLFMKRV +N  WTLFSP +  DLHD YGK FE AY  YE +   GE+K+
Sbjct: 479 HDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKL 538

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           F+K+ AV+LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E
Sbjct: 539 FKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATE 598

Query: 597 TAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            AVCNLGS+NL+AH         + D+DKL  TI  A+R+LDNVIDIN + ++KA+ SN 
Sbjct: 599 IAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNE 658

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G+MGFQ  LH++ +PYAS +A++ AD SME + +HA  AS ELAQERG Y S+
Sbjct: 659 RHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSY 718

Query: 712 KGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +GSLW +G+ P D++ +L E R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTA
Sbjct: 719 EGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTA 778

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TI+NI GVS  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS
Sbjct: 779 TISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGS 838

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           +  I+R+P +L+K++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+
Sbjct: 839 LSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYK 898

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--------- 941
            AW  GLKTTYYLR+  ATS EKST +G  G+LNAV   D  + +     P         
Sbjct: 899 LAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVG 956

Query: 942 SSCTSDT------ECEVCQ 954
           + CT         ECE CQ
Sbjct: 957 AVCTMRPGDPGFEECEACQ 975


>gi|160896948|ref|YP_001562530.1| ribonucleotide-diphosphate reductase subunit alpha [Delftia
           acidovorans SPH-1]
 gi|160362532|gb|ABX34145.1| ribonucleoside-diphosphate reductase, alpha subunit [Delftia
           acidovorans SPH-1]
          Length = 973

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/967 (55%), Positives = 688/967 (71%), Gaps = 32/967 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           + A PS A+    +  G Q+I+R+G V  F P KI+ A+ KAF+AV G   + S  V++ 
Sbjct: 15  DAANPSSAHHLSVQ-DGYQIIRRSGDVVPFTPQKIAVALTKAFLAVRGAQGAASASVRET 73

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  LT+  V  LL+        HIED+QDQVE  LM+ GHH + R YVLYR+ R+  RA 
Sbjct: 74  VDELTQAVVRALLRSRPGGGTFHIEDVQDQVELGLMRGGHHDVARAYVLYRDRRNQERAE 133

Query: 132 QSHSKSDAPIAP-----KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSET 185
           Q  +   A  A       L +  D+G  +  +  RL  ++E +C  L  D+ +  +++ET
Sbjct: 134 QKKAAEAAAAAAAAPAPVLHVT-DNGQRVPLDQARLLALIEASCRNLNADIQAAPIVAET 192

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
            +N+YDG+   ++  A I ++RTLIEK+P+Y  VTAR LL  + REV+       +    
Sbjct: 193 LRNLYDGVPIEEVFKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQP 246

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            ++Q  Y EYF  +I +GV   LL+  ++++DL  LA  +K ERD  F+YLGLQ LYDRY
Sbjct: 247 ADIQAAYAEYFPGFIRKGVDNELLNPELLNYDLPRLAAAIKAERDEQFDYLGLQTLYDRY 306

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           FLH+  +RIE+PQ+FFMRVAMGLAL+E ++  RA+EFY LLSSF FM STPTLFNSGT  
Sbjct: 307 FLHVRKTRIELPQSFFMRVAMGLALQEEDRNARAIEFYELLSSFDFMSSTPTLFNSGTLR 366

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+
Sbjct: 367 SQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVV 426

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWI
Sbjct: 427 PFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWI 486

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PDLFMKRV +   WTLFSP +V DLHDL+G  FE AY  YE +AD GE+K+F++I A+ L
Sbjct: 487 PDLFMKRVMEKGHWTLFSPSDVGDLHDLFGAAFEHAYTAYETKADNGELKLFKRIPAMDL 546

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           WRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+
Sbjct: 547 WRKMLSMLFETGHPWVTFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSV 606

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL  H  +   D+ KL  TI TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ 
Sbjct: 607 NLARHIVDGAIDHGKLRKTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQD 666

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
           AL+ + I YAS  AVE AD+SME I ++A  AS ELA+ERG YSS+KGSLWDQG+ P+D+
Sbjct: 667 ALYEMRIAYASDAAVEFADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDT 726

Query: 726 IGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           + LL + R   + ++R+SRL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+P
Sbjct: 727 LNLLEKARGGYVEVDRSSRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 786

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
           S+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+ DGS+  I+R+P D+K +
Sbjct: 787 SFGNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKSL 846

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +ATAFE++P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR
Sbjct: 847 YATAFEVEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLR 906

Query: 905 SRSATSVEKSTLKG-----------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           + SAT++EKST++                                +   +  I      D
Sbjct: 907 TTSATNIEKSTVQSRVLNAVPSAAAAQPAAVNTSSALEAAAAAARAQAPATDIKFCAIDD 966

Query: 948 TECEVCQ 954
             CE CQ
Sbjct: 967 PGCEACQ 973


>gi|119713587|gb|ABL97638.1| ribonucleotide-diphosphate reductase alpha subunit [uncultured
           marine bacterium EB0_39H12]
          Length = 955

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/954 (56%), Positives = 707/954 (74%), Gaps = 7/954 (0%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
            K+ NK                   ++VIKRNG V S+D  KI+ AI KAF+AVEG  A+
Sbjct: 6   QKEENKQKTTQIEQEQPKPAIAPGQMRVIKRNGSVVSYDAEKIAIAITKAFLAVEGGAAA 65

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  L     T   +   S   +HIE+IQDQVE  LM+SG  K+ R YVLYRE
Sbjct: 66  ASTRIHNEVNQLANSVTTTFTRRMPSGGTLHIEEIQDQVELELMRSGEQKVARTYVLYRE 125

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
           ER  +R      +        +++ +++G   + + K LE++V EAC GL+  +++ ++ 
Sbjct: 126 ERKQLR---QKEEPQKEEKEGIRVTLENGDEDTQDIKHLEIMVTEACEGLEGTNAQQIID 182

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           E  KN+YDG++E D  T+L+ +SRTL+E+EPNY  VTAR LL+ +R E L T  +  ++A
Sbjct: 183 EANKNLYDGVTEEDARTSLVMTSRTLVEQEPNYTYVTARILLDNIRTEAL-TYLELQKQA 241

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           T  EM+ LYP+    ++ +GV+  +L+  +++ D+  L   +   RD  F YLGLQ LYD
Sbjct: 242 TQQEMKVLYPQALRSFLAKGVENEILNPELLEMDIEKLGKAIDSSRDMDFTYLGLQTLYD 301

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H    R E+PQ FFMRV+MGLAL+E ++E++A+EFYNLLSSF +M STPTLFNSGT
Sbjct: 302 RYFIHDTEIRYELPQVFFMRVSMGLALREEKREEKAIEFYNLLSSFDYMSSTPTLFNSGT 361

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +H QLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLG+ I GTNGKSQG
Sbjct: 362 KHSQLSSCYLTTVPDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRGLGSQIKGTNGKSQG 421

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 422 VVPFLKVVNDTAVAVNQGGKRKGAVCSYLETWHVDIEEFVELRKNTGDDRRRTHDMNTAN 481

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+PDLF+KRV+++  WTLF+P +  DLHDLYG EFE  YE YE Q   GEI+ F+++ A 
Sbjct: 482 WVPDLFLKRVSEDKKWTLFTPSDTPDLHDLYGLEFEKRYEEYETQTKTGEIEFFKEVEAK 541

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW+KML+M+FETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLG
Sbjct: 542 DLWKKMLSMVFETGHPWITFKDVCNLRSPQQHTGVVHSSNLCTEITLNTSQDEIAVCNLG 601

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL  H  + + D +KL  TI TA+R+LDNVIDIN + ++ A+ SN  HR IGLG+MGF
Sbjct: 602 SVNLTHHIKDGKMDEEKLEKTINTAIRMLDNVIDINFYAVKAAETSNMKHRPIGLGIMGF 661

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
             AL++L  PYAS EAV+ AD+SME +S++AI AS +LA+ERGAY S++GSLW QG+ PI
Sbjct: 662 HDALYMLETPYASQEAVDFADKSMEMVSYYAIKASSDLAKERGAYQSYEGSLWSQGILPI 721

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
           DSI LL E R    L M+ +S + WD L++ V+  G+RNSN MAIAPTATIANI GVSQS
Sbjct: 722 DSIKLLKESRGEDYLEMDESSSMDWDGLREIVRNQGIRNSNVMAIAPTATIANITGVSQS 781

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+YQNLYVKSN+SG+FTV N  +V  LK+  LWD  MI+DLKY+DGS+  I RIP+++
Sbjct: 782 IEPTYQNLYVKSNLSGEFTVTNIPMVENLKRLGLWDSVMINDLKYYDGSVKGISRIPEEV 841

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901
           K+++ATAF+I+P WLI++ASRRQKWIDQ+QSLNLY+DEP+GKKLD +YR AWL GLKTTY
Sbjct: 842 KELYATAFDIEPRWLIDAASRRQKWIDQSQSLNLYIDEPNGKKLDIMYRMAWLRGLKTTY 901

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           YLRSRSAT+ EKST+   +    +          ++   PS+C+  D +C+ CQ
Sbjct: 902 YLRSRSATTAEKSTISTGELNAVSATAQPEVQPQNNTTAPSACSILDPDCDACQ 955


>gi|325983071|ref|YP_004295473.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           sp. AL212]
 gi|325532590|gb|ADZ27311.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           sp. AL212]
          Length = 954

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/946 (57%), Positives = 695/946 (73%), Gaps = 19/946 (2%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P+    F +     +VI+RNG V +F+P KIS A+ KAF+AV+G   + S+RV++++ N
Sbjct: 22  MPTQNSRFSQH----RVIRRNGAVVTFEPGKISVALTKAFIAVDGGQGAASVRVREVVVN 77

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT+  V  LL+    +   HIEDIQDQVE +LM+SG H + R YVLYREER+  RA    
Sbjct: 78  LTQDVVNALLRRQPDSGTFHIEDIQDQVELALMRSGEHDVARAYVLYREERTRERARLKQ 137

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGL 193
             +    A  L +M D+G  +  +  +L  ++E +C+GL + V   ++L  T K++YDG+
Sbjct: 138 KSTAETAAEVLYVM-DNGQRVPLDVAKLSALIETSCAGLGNAVDPALILKATLKDLYDGV 196

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
              ++  +LI S+R LIEK+P Y+ VTAR LL+ +R EVL        + +   M+  Y 
Sbjct: 197 PIDEVRKSLILSARVLIEKDPAYSYVTARLLLDNVRYEVLGA------EVSQQAMKSHYQ 250

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           EYF  +I+ G++A LL + +  FDL  L+  L  +RD  F+YLGLQ LYDRYFLHI   R
Sbjct: 251 EYFPAFIKRGIEADLLDQRLAQFDLARLSEALDADRDLQFDYLGLQTLYDRYFLHIKEQR 310

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           IE+PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSGT   QLSSC+L
Sbjct: 311 IELPQAFFMRVAMGLALNEIDREARAIEFYQVLSSFDFMSSTPTLFNSGTCRSQLSSCYL 370

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           TTVPDDL GI+ +++ENA+LAKY+GGLGNDWT VR +GA I GTNGKSQGV+PFLKV +D
Sbjct: 371 TTVPDDLDGIYESIKENALLAKYAGGLGNDWTAVRAMGARIKGTNGKSQGVVPFLKVVSD 430

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAVNQGGKRKGAVCAYLE WH+D+EEFL+LRKNTGDDRRRTHDMNTA WIPDLFMKRV
Sbjct: 431 TAVAVNQGGKRKGAVCAYLECWHLDIEEFLELRKNTGDDRRRTHDMNTATWIPDLFMKRV 490

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   WTLFSP +V DLH+ +G++FE AY  YE + +RGE+++++KI AV LWRKML+ML
Sbjct: 491 MEGGDWTLFSPSDVPDLHEKFGQQFEQAYLGYEARIERGELELYKKIPAVQLWRKMLSML 550

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           FETGHPWITFKDPCN+RSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL+AH  +
Sbjct: 551 FETGHPWITFKDPCNVRSPQNHIGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLVAHLKD 610

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              D DKL  TI   +R+LDNVIDIN + + KA+ +N  HR +GLG+MGFQ  LH L IP
Sbjct: 611 GALDLDKLKRTIHVVMRMLDNVIDINFYAVAKARNANLKHRPVGLGIMGFQDCLHQLGIP 670

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y SP AVE AD SME +++ A  AS ELAQERG YS++KGSLWD+G+ P D++ +L + R
Sbjct: 671 YGSPAAVEFADRSMEAVAYQAYWASTELAQERGCYSTYKGSLWDRGILPHDTLTVLQQER 730

Query: 734 -DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
              +  + ++ L WD L++R+K  GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVK
Sbjct: 731 GGYVEADLSATLDWDALRQRIKLHGMRNSNCLAIAPTATISNIVGVSASIEPTYQNLYVK 790

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           SN+SG+FT+ N  LVN+LK+ +LWDE MISDLKY DG+I  I+RIPD+++ ++ATAFE+D
Sbjct: 791 SNLSGEFTITNRSLVNDLKKLNLWDEVMISDLKYFDGAISKIDRIPDNIRTLYATAFEMD 850

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           P+WLIE+ +RRQKWIDQ+QSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLRS  AT+ E
Sbjct: 851 PLWLIEAGARRQKWIDQSQSLNIYMGGVSGKKLDETYKLAWLRGLKTTYYLRSMGATAAE 910

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSL----GIPSSCTSDTECEVCQ 954
           KST++   G LNAVP                I      D  CE CQ
Sbjct: 911 KSTVRA--GSLNAVPADGGIVKAAVEVSTVEIKYCAIDDESCESCQ 954


>gi|270156778|ref|ZP_06185435.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|289164773|ref|YP_003454911.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           longbeachae NSW150]
 gi|269988803|gb|EEZ95057.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|288857946|emb|CBJ11806.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Legionella longbeachae NSW150]
          Length = 941

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 562/939 (59%), Positives = 693/939 (73%), Gaps = 16/939 (1%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
            L    P     ++ IKRNG V ++D +KI  AI KAF+A EG  AS S R+   I+ LT
Sbjct: 18  ELTANAPGL---LKTIKRNGKVVNYDDTKIKIAITKAFIADEGGTASTSDRIHQQIEELT 74

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q      +   S   VHIEDIQDQVE +LM+SGH+K+ R YVLYREE    R   +  K
Sbjct: 75  RQITQVFKRRLPSGGAVHIEDIQDQVELALMRSGHYKVARAYVLYREEHRKARE--NELK 132

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
             A     L I M DG L   +++R++ IV EAC  L+ V ++ V+ +  +N+Y+    +
Sbjct: 133 KQASDQKLLLITMPDGELKPLDTERMDTIVHEACRNLEHVDAEPVIKDALRNLYNEAKFA 192

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+  ALI ++RTL+EKEPNY  V+AR LL+ LR E L  +      AT  EM  LYP YF
Sbjct: 193 DVHKALIMAARTLVEKEPNYTYVSARLLLDCLRIEALHKL-GIEADATFDEMSQLYPAYF 251

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             Y+  G+K  +L E M DFDL  L   L  ERD  F YL LQ LYDRYF+H  G R E+
Sbjct: 252 KIYVAHGIKQGMLDEKMADFDLEKLGKALLPERDMKFTYLSLQTLYDRYFIHDQGIRYEL 311

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQAFFMRVAMGLA++E +K ++A+EFY LLSSF +M STPTLFNSGT  PQLSSC+LTTV
Sbjct: 312 PQAFFMRVAMGLAIREKDKNEKAIEFYQLLSSFDYMSSTPTLFNSGTIRPQLSSCYLTTV 371

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD L GI+ A+++NA+L+KY+GGLGNDWTPVR +G+HI GTNGKSQGV+PFL VA+ TAV
Sbjct: 372 PDHLDGIYSAIKDNALLSKYAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLNVADATAV 431

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA WIPDLFM RV ++
Sbjct: 432 AVNQGGKRKGAVCAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMMRVRED 491

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           A WTLFSPDEV +LHD +GK FE  Y  YE +A +G +K  + +SAV LWRKML+MLFET
Sbjct: 492 ADWTLFSPDEVPELHDQFGKAFEALYNKYEEKAHQGLMKNVKTVSAVKLWRKMLSMLFET 551

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGSINL AH  N + 
Sbjct: 552 GHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKL 611

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KL  TI+TAVR+LDNVIDIN +++ +A+ SN  HR +GLGLMGFQ AL+ L I YAS
Sbjct: 612 DIEKLKQTIKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYELKIDYAS 671

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DE 735
            EAVE AD SME IS++AI AS +LA+ERG+YSS++GSLW +G+ PIDSI LL + R   
Sbjct: 672 EEAVEFADSSMELISYYAIEASCDLAKERGSYSSYEGSLWSKGILPIDSINLLQQARNKY 731

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           L  +R+ RL W+ L+ +V+T GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+
Sbjct: 732 LEQDRSQRLDWESLRIKVRTQGMRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNL 791

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+FTV+N +LV +LK  +LWDE M++DLKY +GS+  I RIP DLKK +AT+FEIDP+W
Sbjct: 792 SGEFTVINPYLVADLKALELWDEVMVNDLKYFNGSVQPISRIPADLKKRYATSFEIDPIW 851

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           L+++ASRRQKWIDQAQSLN+Y+ EPSGKKLD +Y  AW+ GLKTTYYLRS  A++ EKST
Sbjct: 852 LVDAASRRQKWIDQAQSLNIYMAEPSGKKLDQLYMHAWIRGLKTTYYLRSMGASNAEKST 911

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +   D  LNAV +        +    +    D +CE CQ
Sbjct: 912 V--TDSALNAVKI-------MTEAPKACSILDPDCEACQ 941


>gi|319764327|ref|YP_004128264.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|330826375|ref|YP_004389678.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus
           denitrificans K601]
 gi|317118888|gb|ADV01377.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|329311747|gb|AEB86162.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans K601]
          Length = 970

 Score =  960 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/973 (55%), Positives = 682/973 (70%), Gaps = 34/973 (3%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +    +      P+            Q+I+RNG V  F+P KI+ A+MKAF+AV G   +
Sbjct: 10  TAPSTQPHAADAPATDASG-GVFSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGA 68

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S  V++++  LT+  V  L++   S    HIED+QDQVE  LM+  HH++ R YVLYRE
Sbjct: 69  ASASVREVVDELTQAVVRALMRSRPSGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRE 128

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVL 182
            R+  RA +       P  P L ++   G  I  +  RL+ ++E AC+ L  DV +  + 
Sbjct: 129 RRAQERAQKKEQL--LPQMPALYVLDK-GQRIELDILRLQALIESACANLGSDVQAAPIA 185

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           +ET +N+YDG+   ++  A I ++RTLIEK+P Y   TAR LL  + REVL         
Sbjct: 186 AETLRNLYDGVPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLGQ------D 239

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
                M   Y   F ++I +GV   LL   ++DFDL  L   LK  RD  F+YLGLQ LY
Sbjct: 240 VAPAGMAAAYAANFPQFIRKGVDNELLDPRLLDFDLQRLGQALKAGRDLQFDYLGLQTLY 299

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK----RAVEFYNLLSSFHFMCSTPTL 358
           DRYFLH+  +RIE+PQAFFMRVAMGLAL+E + +     RA+EFY LLSSF FM STPTL
Sbjct: 300 DRYFLHVKKTRIELPQAFFMRVAMGLALREGDPKTTGSARAIEFYELLSSFDFMSSTPTL 359

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT   QLSSC+LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTN
Sbjct: 360 FNSGTLRSQLSSCYLTTVPDELGGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTN 419

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G+SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+DVEEFL+LRKNTGDDRRRTHD
Sbjct: 420 GESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDVEEFLELRKNTGDDRRRTHD 479

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           MNTANWIPDLFMKRV     WTLFSP +V DLHDLYG+ FE AY  YE + D GE+++F+
Sbjct: 480 MNTANWIPDLFMKRVMDKGQWTLFSPSDVPDLHDLYGQAFERAYTAYEAKVDSGELQLFK 539

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ AV LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ETA
Sbjct: 540 RVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETA 599

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGS+NL  H  +   D+DKL  T+ TA+R+LDNVIDIN + ++KA+ SN  HR +GL
Sbjct: 600 VCNLGSVNLARHLKDGAIDHDKLRKTVSTAMRMLDNVIDINYYAVDKARDSNLRHRPVGL 659

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           GLMGFQ AL+ L IPY+S  AV  ADESME I ++A  AS ELA+ERG YSS++GSLW +
Sbjct: 660 GLMGFQDALYELRIPYSSDAAVTFADESMEAICYYAYWASTELARERGTYSSYEGSLWSK 719

Query: 719 GVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           G+ P+DS+ LLA+ R   + ++RT+RL WD L+ ++   GMRNSNC+AIAPTATI+NI G
Sbjct: 720 GILPLDSLELLAKERGGYVEVDRTTRLDWDALRSKITQDGMRNSNCIAIAPTATISNIVG 779

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           V  SI+PS+ NL VKSN+SG+FTV+N +LV +LK+  LWD+ M+ DLK+  GS+  I+R+
Sbjct: 780 VDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKKLGLWDDVMLMDLKHFKGSLHAIDRV 839

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P ++K ++ATAFE+ P WL+E+A+RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GL
Sbjct: 840 PQNVKALYATAFEVAPAWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGL 899

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS----------------THSLGIP 941
           KTTYYLR++SAT VE ST+     +LNAV     + S                  +  + 
Sbjct: 900 KTTYYLRTQSATHVEMSTVNTR--QLNAVSAGTDSQSGALNAAAAAAQTQAGALPATDVK 957

Query: 942 SSCTSDTECEVCQ 954
                D  CE CQ
Sbjct: 958 FCAIDDPSCEACQ 970


>gi|302877616|ref|YP_003846180.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella
           capsiferriformans ES-2]
 gi|302580405|gb|ADL54416.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella
           capsiferriformans ES-2]
          Length = 944

 Score =  960 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/958 (57%), Positives = 686/958 (71%), Gaps = 30/958 (3%)

Query: 11  DEDAFPSLAYPFPEKIKG------VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           +  + P+         +        +V++RNG V  F+P+KIS A+ KAF+AV G  A+ 
Sbjct: 3   NAASAPTSLSSAAGDKEANSSFDLYKVVRRNGSVVVFEPAKISVALTKAFIAVSGGPAAA 62

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S RV++++  LT+  V  L++       +HIEDIQDQVE  LM+SG H + R YVLYREE
Sbjct: 63  SARVRELVDQLTQGVVIALMRRQPHGGTLHIEDIQDQVELGLMRSGEHDVARAYVLYREE 122

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLS 183
            S  RA           A  + +   DG +   +  RL ++V+ AC GL +V  +++VL 
Sbjct: 123 HSRSRAQ----TQVQQPAHVINVTGKDGVVQPLDLARLSVLVQSACEGLGEVVDAELVLQ 178

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
              K+MYDG+   ++   LI S+R++IEKEP Y  VTAR LL  +  EVL       +  
Sbjct: 179 VALKDMYDGVPLHEVHKCLILSARSMIEKEPAYNFVTARLLLNNICSEVLG------EDV 232

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
              +M   Y +YF ++I+ G+ A LL E +  FDL  LA +L   RD  F YLGLQ LYD
Sbjct: 233 APADMATRYADYFPKFIKRGIAAELLDEKLAGFDLPRLAAELDASRDLQFGYLGLQTLYD 292

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYFLHI G+RIE PQ FFMRVAMGLAL E ++E RA+EFY LLS F FMCSTPTLFNSG+
Sbjct: 293 RYFLHIGGTRIEAPQVFFMRVAMGLALNEIDREARAIEFYRLLSGFDFMCSTPTLFNSGS 352

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           R  QLSSC+L+TV D+L GI+ A+++NA+LAK++GGLGNDWTPVR LGAHI GTNG+SQG
Sbjct: 353 RRSQLSSCYLSTVEDNLEGIYDAIKDNALLAKFAGGLGNDWTPVRALGAHIKGTNGESQG 412

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT+N
Sbjct: 413 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTSN 472

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV +   WTLFSP +V DLHDL+G +FEIAY  YE +A  G+IK+++ + A 
Sbjct: 473 WIPDLFMKRVMEGGNWTLFSPSDVKDLHDLFGIDFEIAYTAYEEKAAAGQIKLYKTVQAA 532

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           +LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++++E AVCNLG
Sbjct: 533 SLWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNADEIAVCNLG 592

Query: 604 SINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           S+NL AH            D+ KL  TI TA+R+LDNVIDIN + + KA+ SN  HR +G
Sbjct: 593 SVNLPAHLYPEGHDLAGQIDHAKLRRTINTAMRMLDNVIDINYYAVAKARNSNLKHRPVG 652

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+MGFQ  LH L +PY+S EAVE AD SME + ++A  AS ELA+ERG Y+S+KGSLWD
Sbjct: 653 MGIMGFQDCLHQLRLPYSSMEAVEFADRSMEAVCYYAYWASTELAEERGRYASYKGSLWD 712

Query: 718 QGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            G+ P D++ LL E R   + ++ +  + WD L+ R+   GMRNSNC+AIAPTATI+NI 
Sbjct: 713 CGILPQDTLDLLREERGGYVEVDTSVSMDWDALRARIGQYGMRNSNCVAIAPTATISNII 772

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  I+P+YQNL+VKSN+SG+FTV+N  LV ELK+  LWDE MISDLKY DGS+  I+R
Sbjct: 773 GVSACIEPTYQNLFVKSNLSGEFTVINDHLVAELKRLGLWDEVMISDLKYFDGSLAKIDR 832

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IP +L+ ++ATAFE++P WLIE+ASRRQKWIDQAQSLN+Y+   SG+KLD  Y+ AW+ G
Sbjct: 833 IPAELRSLYATAFEVEPSWLIEAASRRQKWIDQAQSLNIYMAGVSGRKLDDTYKLAWVRG 892

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           LKTTYYLR+  ATS EKST  G  G LNAV V D      +         + ECE CQ
Sbjct: 893 LKTTYYLRTLGATSAEKST--GRAGALNAVSVGD----APAETTQFCSIDNPECEACQ 944


>gi|33593915|ref|NP_881559.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis Tohama I]
 gi|33563989|emb|CAE43254.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           pertussis Tohama I]
 gi|332383334|gb|AEE68181.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis CS]
          Length = 975

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/979 (55%), Positives = 699/979 (71%), Gaps = 39/979 (3%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P+       E +      P   +     +I+RNG V  F+PSKI+ A+ KAF+AV G  
Sbjct: 10  RPTAVPPAQSETS----TDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQ 65

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+++++ LT Q V+ L+++  +    HIED+QDQVE +LM+SG H + R YVLY
Sbjct: 66  GAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLY 125

Query: 122 REERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176
           RE R+  RAA       S   A   P L ++ D+G     +   L   +E A  GL Q  
Sbjct: 126 RERRAQERAAAAEVLEKSSPAAAQEPTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYT 184

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
            ++ +L ET KN+YDG+   ++  + I ++R L+EK+P Y++VTAR LL  +R+EVL   
Sbjct: 185 DTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG-- 242

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
               ++ +  +M   Y EYF  +I+ G++  LL   + ++DL  +A  L   RD  F YL
Sbjct: 243 ----EEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYL 298

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STP
Sbjct: 299 GLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTP 358

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI G
Sbjct: 359 TLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKG 418

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRT
Sbjct: 419 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRT 478

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANWIPDLFMKRV +N  WTLFSP +  DLHD YGK FE AY  YE +   GE+K+
Sbjct: 479 HDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKL 538

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           F+K+ AV+LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E
Sbjct: 539 FKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATE 598

Query: 597 TAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            AVCNLGS+NL+AH   N       ++DKL  TI  A+R+LDNVIDIN + ++KA+ SN 
Sbjct: 599 IAVCNLGSVNLVAHMKPNANGGYELNHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNE 658

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G+MGFQ  LH++ +PYAS +A++ AD SME + +HA  AS ELAQERG Y S+
Sbjct: 659 RHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSY 718

Query: 712 KGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +GSLW +G+ P D++ +L E R   + ++ +S L WD L+ R+K  GMRNSNC+AIAPTA
Sbjct: 719 EGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTA 778

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           TI+NI G S  I+P++QNLYVKSN+SG+FTVVN +LV +LK+  LWDE M++DLKY DGS
Sbjct: 779 TISNIIGASACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGS 838

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           +  I+R+P +L+K++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+
Sbjct: 839 LSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYK 898

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--------- 941
            AW  GLKTTYYLR+  ATS EKST +G  G+LNAV   D  + +     P         
Sbjct: 899 LAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVG 956

Query: 942 SSCTSDT------ECEVCQ 954
           + CT         ECE CQ
Sbjct: 957 AVCTMRPGDPGFEECEACQ 975


>gi|329902474|ref|ZP_08273119.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548766|gb|EGF33403.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 969

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/947 (58%), Positives = 688/947 (72%), Gaps = 26/947 (2%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +   ++++RNG V +F+PSKIS A+ KAF+AV G   + S RV+++++ LT   V  L
Sbjct: 33  AALADYRILRRNGAVVAFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTATVVAAL 92

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           ++   +    HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q  ++  A    
Sbjct: 93  VRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERALQQAARPAAASV- 151

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202
           +L +  +DG     + +++  +++ AC GL+  V +  + +ET KN+YDG+   +L  + 
Sbjct: 152 QLHVT-EDGQRRLLDMQQVHKLIDAACIGLEKHVDANAIFAETVKNLYDGVPVEELHKSA 210

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I ++R L+EK+P Y  VTAR L+  +R+EV        ++    + Q  Y EYF ++I  
Sbjct: 211 ILAARALMEKDPAYTTVTARILMHVIRKEVFG------KEVAQADAQAHYLEYFPQFIHN 264

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+ A LL   +  FDL  LA  L  +RD  F Y+GLQ LYDRYFLHI   RIEMPQAF+M
Sbjct: 265 GIAAELLDAKLAGFDLDRLAKALVPDRDLQFGYIGLQTLYDRYFLHIRDIRIEMPQAFYM 324

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLAL E ++E+RA+EFYNLLSSF FM STPTLFNSGT   QLSSC+LTTV DDL G
Sbjct: 325 RVAMGLALNEAKREERAIEFYNLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLEG 384

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ A+++NA+LAKY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGG
Sbjct: 385 IYDAIKDNALLAKYAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGG 444

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV +   W LF
Sbjct: 445 KRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGSWMLF 504

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP EV DLHD  G+ FE AY  YE  A RGE+++F+K+ A+ LWRKML+MLFETGHPWIT
Sbjct: 505 SPSEVPDLHDKVGRAFEAAYTGYEAAAARGELRMFKKVEALDLWRKMLSMLFETGHPWIT 564

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL AH  + Q D+ KL 
Sbjct: 565 FKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHMKDGQLDHVKLQ 624

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TIR A+R+LDNVIDIN + ++KA+ SN  HR +GLG+MGFQ  LH++ +PYAS EAV  
Sbjct: 625 KTIRIAMRMLDNVIDINYYAVQKARDSNMRHRPVGLGIMGFQDCLHIMRVPYASAEAVSF 684

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRT 741
           AD+SME + ++A +AS ELA+ERGAYSS+KGSLWD+G+ P DS+ LL E R   L  + +
Sbjct: 685 ADKSMEAVCYYAYTASTELAEERGAYSSYKGSLWDRGILPQDSLKLLMEERGGYLETDLS 744

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             + W  L+ R+K  GMRNSNC+AIAPTATI+NI GV+  I+P+YQNLYVKSN+SG+FT 
Sbjct: 745 EAMDWTPLRARIKQFGMRNSNCVAIAPTATISNIIGVAACIEPTYQNLYVKSNLSGEFTE 804

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +N +LV +LK RDLWDE MISDLKY DGS+  I+R+P +L+ I+ATAFEI+P WL+E+AS
Sbjct: 805 INEYLVRDLKARDLWDEVMISDLKYFDGSLARIDRVPQELRAIYATAFEIEPSWLVEAAS 864

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           RRQKWIDQAQSLN+Y+   SGKKLD  Y+ AWL GLKTTYYLR+  AT  EKST K   G
Sbjct: 865 RRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSK--TG 922

Query: 922 KLNAVPVTDPNSSTHSLG--------IPSSCTSDT------ECEVCQ 954
            LNAV     +S                 SC          ECE CQ
Sbjct: 923 SLNAVSADGVSSGVALSAYTTAGADVDGPSCVLRPGDDGFEECEACQ 969


>gi|297538243|ref|YP_003674012.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera
           sp. 301]
 gi|297257590|gb|ADI29435.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera
           sp. 301]
          Length = 938

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/937 (59%), Positives = 692/937 (73%), Gaps = 18/937 (1%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  +QVI+RNG    F   KIS AI KAF+AVEG  +  S RV+D +  L++     L+
Sbjct: 13  SLPTLQVIRRNGAAVQFTLDKISIAITKAFLAVEGNQSGASQRVRDQVATLSQLVNNALM 72

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   +   +HIEDIQDQVE +LM++G+H + R YVLYRE+R+  RAA+  S     ++  
Sbjct: 73  RRLPAGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKASHPTTELSHT 132

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203
           L +   DG LI  + K+L  +V EAC  L DV +  IV+ +  +++YDG+  +++  ALI
Sbjct: 133 LNV-NIDGKLIPLDIKQLNEMVGEACLNLGDVVNPSIVVEQAVRDLYDGIPFTEVYKALI 191

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            S+R+LIE EP Y  VTAR  L+ +R EVL       ++ +H +M   Y EYF RYI+ G
Sbjct: 192 LSARSLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAQMDEHYAEYFPRYIKMG 245

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           + A LL   +  FDL  LA  L  +RDF F YLG+Q LYDRYFLHI   RIE+PQ FFMR
Sbjct: 246 INAELLDSRLAQFDLTKLAAALNKDRDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMR 305

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGLA+ E ++E RA+EFYN+LSSF FM STPTLFN+GT H QLSSC+LTTV DDL GI
Sbjct: 306 VAMGLAINEIDRESRAIEFYNVLSSFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGI 365

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           +  ++ENAML KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV NDTAVAVNQGGK
Sbjct: 366 YQGIKENAMLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGK 425

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RVT+   WTLFS
Sbjct: 426 RKGAVCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEAGDWTLFS 485

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P +V DLHD YGK FE AY  YER+A+ GEIK+F+KI A+ +WRKML+MLFETGHPWITF
Sbjct: 486 PSDVPDLHDKYGKAFETAYVEYERRAENGEIKLFKKIPALQMWRKMLSMLFETGHPWITF 545

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----DYD 619
           KDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NLL H A        D D
Sbjct: 546 KDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLLQHLAEVNGKLVLDND 605

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL +TI+  +R+LDNV+DIN + + KA+ +N  HR +G+G+MGFQ+ LH + IPYAS EA
Sbjct: 606 KLQATIKIGMRMLDNVVDINFYPVGKARNANTRHRPVGMGIMGFQNCLHAMRIPYASMEA 665

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738
           VE AD +ME + ++A  AS  LA+ER AYSSFKGSLWDQG+ P+D++ LL   R   + +
Sbjct: 666 VEFADRAMEMVCYNAYYASTVLAEERAAYSSFKGSLWDQGILPLDTLDLLLNERGGNVEV 725

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +R+  L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+
Sbjct: 726 DRSKTLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGE 785

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           FT+VN  LV +LK R LWD  M+SDLKY DGS+  I+R+P DLK+++ATAF++DP WLIE
Sbjct: 786 FTIVNEQLVIDLKARGLWDAVMVSDLKYFDGSLQKIDRVPADLKQLYATAFDVDPTWLIE 845

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +A+RRQKWIDQAQSLNLY   PSGKKL+  Y  AW  GLKTTYYLRS  AT+ EKST  G
Sbjct: 846 AAARRQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSMGATAAEKST--G 903

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
             G+LNAV      +    L  P  C+ D  ECE CQ
Sbjct: 904 SGGELNAVSAGLEEAPKEYL--PKVCSIDNPECESCQ 938


>gi|114332418|ref|YP_748640.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
           eutropha C91]
 gi|114309432|gb|ABI60675.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas
           eutropha C91]
          Length = 957

 Score =  955 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/959 (56%), Positives = 691/959 (72%), Gaps = 16/959 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           PS                P   +     +VI+RNG V +F+P KIS A+ KAF+AV G  
Sbjct: 8   PSSSSILQKNFLGEMTDSPATRQDYSQYKVIRRNGAVVAFEPGKISIAMTKAFIAVRGGQ 67

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           ++ S  +++I+  LT + V  L +        HIEDIQDQVE +LM+SG H + R YVLY
Sbjct: 68  SAASSSMREIVAQLTGEVVHALTRRRPGGGTFHIEDIQDQVELALMRSGDHDVARAYVLY 127

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKI 180
           REER+  RA Q      +  A  L I+ ++G  I  +  RL   +E AC  L +V ++ +
Sbjct: 128 REERARERARQQKEPPTSTQAAVLHIV-ENGQRIPLDPSRLTARIESACQHLGNVVNAGL 186

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++    +++YDG+   ++  + I S+R LIEKEP Y+ VTAR LL+ +R EVL       
Sbjct: 187 IVKAMLRDLYDGVPAEEVRKSAILSARALIEKEPAYSFVTARLLLDNIRHEVLG------ 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           +  +H  MQ  Y +YF  +I +G++A LL E +  FDL  L+  L  +RD  F YLGLQ 
Sbjct: 241 EDVSHEAMQSRYADYFPGFIRQGMEAGLLDERLGQFDLARLSETLIADRDLQFGYLGLQT 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHI+  RIE+PQAFFMRVAMGLAL E ++E RA+EFY+LLS+F FM STPTLFN
Sbjct: 301 LYDRYFLHISERRIELPQAFFMRVAMGLALNEIDREARAIEFYHLLSTFDFMSSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+L+TVPD L GI+ A++ENA+L+K++GGLGNDWTPVR +GA I GTNGK
Sbjct: 361 SGTRRSQLSSCYLSTVPDSLDGIYEAIKENALLSKFAGGLGNDWTPVRAMGARIKGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV +DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 421 SQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TA W+PDLFMKR+ ++  WTLFSP +  DLH+ YGK FE AY  YE QA +G + + ++I
Sbjct: 481 TAVWVPDLFMKRMLEDQEWTLFSPSDTPDLHEKYGKAFEEAYIAYEEQATQGRLALHKRI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKMLTMLFETGHPWITFKDPCNIRSPQ HVGVVHSSNLCTEITLN++ +E AVC
Sbjct: 541 PARQLWRKMLTMLFETGHPWITFKDPCNIRSPQNHVGVVHSSNLCTEITLNTNEKEIAVC 600

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL AH  + + D  KL  T+ TA+R+LDNVIDIN + + KA+ +N  HR +GLG+
Sbjct: 601 NLGSINLPAHIVDGKLDLTKLKQTVATAMRMLDNVIDINFYAVAKARNANLRHRPVGLGI 660

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ  LH L I YAS EAVE AD SME +++H   AS ELA+ERG Y+++ GSLW++G+
Sbjct: 661 MGFQDCLHKLGISYASREAVEFADSSMEAVAYHTYWASTELAEERGTYATYHGSLWERGI 720

Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            P DS+ LL E R   + ++ +S L W  L++R+K  GMRNSNC+AIAPTATI+NI GVS
Sbjct: 721 LPQDSLALLQEERGGHVEVDTSSTLDWTPLRERIKQYGMRNSNCLAIAPTATISNIIGVS 780

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI+P+YQNLYVKSN+SG+FTVVN  LVN+LK++DLWDE MI+DLK++DG+   I+RIP+
Sbjct: 781 ASIEPTYQNLYVKSNLSGEFTVVNQSLVNDLKKQDLWDEVMIADLKHYDGAASKIDRIPE 840

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +L+ ++ATAFEIDP WL+E+A+RRQKWIDQAQSLNLY+   SGKK+D +YR AWL GLKT
Sbjct: 841 NLRALYATAFEIDPRWLVEAAARRQKWIDQAQSLNLYMSGASGKKMDDLYRLAWLRGLKT 900

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVT----DPNSSTHSLGIPSSCTSDTECEVCQ 954
           TYYLR+  AT+ EKST+    G LNAVP        +S             D ECE CQ
Sbjct: 901 TYYLRAMGATTAEKSTVH--TGTLNAVPAQQNGHTDSSGQIHSATKQCAIDDPECEACQ 957


>gi|288941564|ref|YP_003443804.1| ribonucleoside-diphosphate reductase subunit alpha [Allochromatium
           vinosum DSM 180]
 gi|288896936|gb|ADC62772.1| ribonucleoside-diphosphate reductase, alpha subunit [Allochromatium
           vinosum DSM 180]
          Length = 985

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/975 (58%), Positives = 707/975 (72%), Gaps = 23/975 (2%)

Query: 2   HPSKDV---NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           HP++         +   P  A         VQVI+RNG +T FDPSKI  A+ KAF+AVE
Sbjct: 12  HPAQARHADPSASQTTTPDSAESTGHIPGRVQVIRRNGQITHFDPSKIMVAMTKAFLAVE 71

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
           G  A  S R+ D +  LTEQ V  L +       VHIEDIQDQVE +LM++G H+I R+Y
Sbjct: 72  GDSAGASSRIHDRVAELTEQVVGALTRRLSGGGTVHIEDIQDQVELALMRAGEHRIARDY 131

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS 177
           VLYRE R+  RAA+S +++ A   P  + + + DG+    +   +  ++EE+C  L  V 
Sbjct: 132 VLYREARARERAARSAAETAAIREPHPINVTLADGSTRPLDVAHMARLLEESCRDLDAVD 191

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237
              +LS+T +N++DG+ E+D+  AL+ S+RTLIE+EP Y++  AR LL+ LRRE L  + 
Sbjct: 192 PNAILSDTLRNLFDGVREADVRQALVMSARTLIEREPQYSQAAARLLLDILRREALGFLD 251

Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
                 T  +M   Y +YF  YI+       L   +  +DL  L   LK ERD  F YLG
Sbjct: 252 LAVGVETQADMAERYGDYFAAYIKRAADLEHLDGQLARYDLKRLGAALKPERDLQFTYLG 311

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           LQ LYDRYF+H  +G R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FMCSTP
Sbjct: 312 LQTLYDRYFIHTADGIRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMCSTP 371

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSG+  PQLSSCFLTTVPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI G
Sbjct: 372 TLFNSGSPRPQLSSCFLTTVPDDLDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKG 431

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNGKSQGVIPFLKVANDTA+AVNQGG+R+GAVCAYLETWHID+EEFLDLRKNTGDDRRRT
Sbjct: 432 TNGKSQGVIPFLKVANDTAIAVNQGGRRRGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 491

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANW+PDLFMKRV ++  WTLFSPDE  DLHDL G+ FE AY  YE +A RGE+K+
Sbjct: 492 HDMNTANWVPDLFMKRVAEDGHWTLFSPDETPDLHDLTGQAFEQAYVAYEERAARGELKI 551

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +++ AV LWRKML MLFETGHPWI FKDPCN+R   QHVGVVHSSNLCTEITL+++  E
Sbjct: 552 SKRLKAVDLWRKMLAMLFETGHPWIAFKDPCNLRYTNQHVGVVHSSNLCTEITLHTNDLE 611

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            AVCNLGSINL AH  +   D  +L  T+RTA+R+LDNVID N + + +A+ SN  HR +
Sbjct: 612 AAVCNLGSINLAAHITDKGLDTQRLRRTVRTAMRMLDNVIDYNFYNVPQARASNLRHRPV 671

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLGLMGFQ AL+ L IPYAS EAV  AD+S E++S++AI AS +LA ERG Y SF+GSLW
Sbjct: 672 GLGLMGFQDALYRLRIPYASQEAVAFADQSTEYLSYYAIEASADLAAERGRYPSFEGSLW 731

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            QGV PIDSIGL+ + R   L M+ +  L WD L++R++T+GMRNSNC+AIAPTATI+NI
Sbjct: 732 SQGVLPIDSIGLMEQGRGGYLQMDTSHTLDWDRLRERIQTVGMRNSNCLAIAPTATISNI 791

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVSQSI+P+YQNL+VKSN+SG+FTVVN +LV +LK+R LWD  M++DLKY+DGS+  I+
Sbjct: 792 VGVSQSIEPTYQNLFVKSNLSGEFTVVNPYLVADLKERGLWDAVMVNDLKYYDGSLLPID 851

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIPD+LK+++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ 
Sbjct: 852 RIPDELKELYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMQEPSGKKLDNLYKLAWVR 911

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS------------- 942
           GLKTTYYLRS  AT VEKST+    G+ N +     N        PS             
Sbjct: 912 GLKTTYYLRSMGATHVEKSTM-ADTGRANRLSAVGGNYLGRQTAKPSDTTDDTPAAATAT 970

Query: 943 ---SCTSDTECEVCQ 954
                  D +CE CQ
Sbjct: 971 PSACSILDPDCEACQ 985


>gi|158341283|ref|YP_001522353.1| ribonucleotide-diphosphate reductase subunit alpha [Acaryochloris
           marina MBIC11017]
 gi|158311524|gb|ABW33135.1| ribonucleotide-diphosphate reductase, alpha subunit [Acaryochloris
           marina MBIC11017]
          Length = 960

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/960 (56%), Positives = 684/960 (71%), Gaps = 33/960 (3%)

Query: 14  AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
             P             +VI+RNG V  F+  KI+ A+ KAF+AV+G  +  S RV++++ 
Sbjct: 15  LPPIQGGSVEGLDAEYKVIRRNGSVVGFEADKIAIAMTKAFLAVKGVQSGVSARVRELVA 74

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            LT   VT L +   +    HIEDIQDQVE +LM+SG H + R YVLYRE+RS  R  Q 
Sbjct: 75  TLTTNVVTALKRRQPTGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRSQKRTQQH 134

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
             ++          +MD G  +  + +R   +V+ AC  L D VS K +  E  KN+YDG
Sbjct: 135 GIEAAPIY------LMDGGDRVLLDLERFNDLVDSACINLGDTVSGKAIADEALKNIYDG 188

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
            S  +L  + I ++R+ IEK+P+Y+KVTAR LL ++R+EVL        + T  EMQ  Y
Sbjct: 189 ASVVELHKSAILAARSHIEKDPDYSKVTARLLLHRIRQEVLGA------EVTQAEMQARY 242

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            EYF  +I++G+   LL E +  F+L  L + L  ERD  F YLGLQ LYDRYFLH    
Sbjct: 243 AEYFPHFIQQGIATGLLDEKLAQFNLQKLGSVLVAERDLQFGYLGLQTLYDRYFLHTEDR 302

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           RIE+PQAFFMRVAMGLAL E ++E+RA EFY++LS F FM STPTLFNSGT   QLSSC+
Sbjct: 303 RIELPQAFFMRVAMGLALNEIDREERAAEFYDILSKFDFMSSTPTLFNSGTVRSQLSSCY 362

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           LTTVPD L GI+ A+++NA+L+KY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV N
Sbjct: 363 LTTVPDALDGIYSAIKDNALLSKYAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVN 422

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD+NTANWIPDLFMKR
Sbjct: 423 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDINTANWIPDLFMKR 482

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  WTLFSPD V DLHD  GKEFE AY  YE+QA +GE+K F+ + A  LWRKML+M
Sbjct: 483 VMEDGDWTLFSPDIVPDLHDKVGKEFETAYLAYEQQAAKGELKPFKTVPANTLWRKMLSM 542

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           LFETGHPWITFKDPCN+RSPQQH+G+VHSSNLCTE+TLN++  E AVCNLGS+NL+ H  
Sbjct: 543 LFETGHPWITFKDPCNVRSPQQHIGMVHSSNLCTEVTLNTNENEIAVCNLGSVNLVNHMV 602

Query: 613 ----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 Q D  KL  TI  A+R+LDNVID+N + +  A+ SN  HR +GLG+MGFQ  LH
Sbjct: 603 EKNGQMQLDQAKLQHTITIAMRMLDNVIDLNYYAVSTARNSNLKHRPVGLGIMGFQDCLH 662

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +PYAS +AV+ AD +ME + ++A  AS ELAQERG YS++KGSLWD+G+ P D++ L
Sbjct: 663 QLRLPYASQDAVDFADRAMEAVCYYAYWASTELAQERGRYSTYKGSLWDRGILPQDTLAL 722

Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           L EVR     ++ +S + WD L+ R+   GMRNSNC+AIAPTATIANI GVS  I+P+YQ
Sbjct: 723 LKEVRGGFVEVDESSTMDWDLLRDRIAQHGMRNSNCVAIAPTATIANIIGVSACIEPTYQ 782

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NLYVKSN+SG+FTVVN +LV +LK R+LWDE MI+DLKY DGS+  I+RIP +L++++AT
Sbjct: 783 NLYVKSNLSGEFTVVNEYLVRDLKVRELWDEVMIADLKYFDGSLAKIDRIPPELRQLYAT 842

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           AFE++P W++E+A+RR KWIDQAQSLN+Y+   SGKKLD IY+ AW  GLKTTYYLRS  
Sbjct: 843 AFEVEPNWIVEAAARRSKWIDQAQSLNIYMAGASGKKLDQIYKLAWQRGLKTTYYLRSLG 902

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSDT------ECEVCQ 954
           AT VEKST       LNAV     ++       ++ S  +   C+         +CE CQ
Sbjct: 903 ATHVEKST--APASSLNAVSNNGSSNGIGNILTTSKSENLGQVCSLSPGDANFDDCEACQ 960


>gi|30250347|ref|NP_842417.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas
           europaea ATCC 19718]
 gi|30181142|emb|CAD86335.1| Ribonucleotide reductase large subunit [Nitrosomonas europaea ATCC
           19718]
          Length = 955

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/955 (55%), Positives = 688/955 (72%), Gaps = 10/955 (1%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           PS    +           P   +     ++I+RNG V +F+P KIS A+ KAF+AV G  
Sbjct: 8   PSSSPVQQKNFLEEMTDLPATRQNYSQYKIIRRNGAVVAFEPGKISIALTKAFIAVRGGQ 67

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           ++ S  +++I+  LT + V  L +        HIEDIQDQVE +LM+SG H I R YVLY
Sbjct: 68  SAASSSMREIVAQLTGEVVHALTRRRPEGGTFHIEDIQDQVELALMRSGDHDIARAYVLY 127

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180
           REER+  RA Q  ++  +     L ++ ++G  I  +  +L   +E AC  L + V + +
Sbjct: 128 REERARERARQQSAQPASGQVAVLHVV-ENGQKIPLDPAQLMARIESACQNLGNTVDAAL 186

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++    K++YDG+   ++  + I S+R LIEKEP Y+ VTAR LL+ +R EVL       
Sbjct: 187 IVKSMLKDLYDGVPAEEVRKSAILSARALIEKEPAYSFVTARLLLDNIRYEVLG------ 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           ++  H  MQ  Y EYF  ++ +G++A LL E +  FDL  L+  L  +RD  F YLGLQ 
Sbjct: 241 EEVAHEAMQSRYAEYFPEFVRKGIEAGLLDERLGQFDLARLSEALAADRDLQFGYLGLQT 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH++  RIE+PQ FFMRVAMGLAL E ++E RA+EFY+LLS F FM STPTLFN
Sbjct: 301 LYDRYFLHVSERRIELPQIFFMRVAMGLALNEIDREARAIEFYHLLSKFDFMSSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTR  QLSSC+L+TVPD L GI+ A++ENA+L+K++GGLGNDWTPVR +GA I GTNGK
Sbjct: 361 SGTRRSQLSSCYLSTVPDSLDGIYEAIKENALLSKFAGGLGNDWTPVRAMGARIKGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV +DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 421 SQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TA W+PDLFMKR+ ++  WTLFSP +  DLHD +G+ FE AY  YE QA +G + +F++I
Sbjct: 481 TAVWVPDLFMKRMQEDQEWTLFSPSDTPDLHDKFGRAFEEAYIAYEEQAAQGRLTLFKRI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LWRKMLTMLFETGHPWITFKDPCNIRSPQ HVGVVHSSNLCTEITLN+S +E AVC
Sbjct: 541 PARQLWRKMLTMLFETGHPWITFKDPCNIRSPQNHVGVVHSSNLCTEITLNTSEKEIAVC 600

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NLLAH  + + D  +L  T+ TA+R+LDNVIDIN + + KA+ +N  HR +GLG+
Sbjct: 601 NLGSVNLLAHIVDGKLDQARLKQTVTTAMRMLDNVIDINFYAVAKARNANFRHRPVGLGI 660

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQ  LH L I YASPEAVE AD SME +++H   AS ELA+ERG Y++++GSLWD+G+
Sbjct: 661 MGFQDCLHKLGISYASPEAVEFADRSMEAVAYHTYWASTELAEERGTYATYRGSLWDRGI 720

Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            P D++ LL E R   + ++ +S   WD L+ R++  GMRNSNC+AIAPTATI+NI GVS
Sbjct: 721 LPQDTLELLREERGGHVEIDTSSTQDWDALRDRIRQYGMRNSNCLAIAPTATISNIIGVS 780

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SI+P+YQNLYVKSN+SG+FTVVN +LVN+LK++DLWDE MI+DLK++DG++  I+R+P+
Sbjct: 781 ASIEPTYQNLYVKSNLSGEFTVVNQWLVNDLKKQDLWDEVMIADLKHYDGAVSKIDRVPE 840

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +L+ ++ATAFE+DP WL+E+ASRRQKWIDQAQSLNLY+   SGKK+D +YR AWL GLKT
Sbjct: 841 NLRNLYATAFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKMDELYRLAWLRGLKT 900

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           TYYLR+  AT+ EKST+                 +            + ECE CQ
Sbjct: 901 TYYLRALGATTAEKSTVHTGTLNAVPAQHEAHAGNLAHSAPQQCAIDNPECEACQ 955


>gi|120556761|ref|YP_961112.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
           aquaeolei VT8]
 gi|120326610|gb|ABM20925.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinobacter
           aquaeolei VT8]
          Length = 949

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/941 (56%), Positives = 688/941 (73%), Gaps = 31/941 (3%)

Query: 18  LAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
              P P    + +QVIKRNG + SF+P+KIS A+ KAF+AVEG  A+ S R+ D +  +T
Sbjct: 36  AEPPAPATDTQSLQVIKRNGTLVSFNPAKISVAVTKAFLAVEGDQAAGSARINDAVHRVT 95

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           EQ V  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYREE +  RA      
Sbjct: 96  EQVVQAISRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARQRA----VD 151

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L +   DG++   +   ++  VE+A +GL  ++   ++ +  +N+YDG+ E+
Sbjct: 152 EPVEAHPHLTVKKADGSIAPLDLGLMKQQVEQASTGLDGINGDSLVEDALRNLYDGIEET 211

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           ++ +ALI ++R  IE+EP+Y+ VTAR LLE+LR E      +         +  +YP+  
Sbjct: 212 EVLSALIMTARGRIEREPDYSAVTARLLLEQLRLET----AEALDLPRSLPLAEIYPQAL 267

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             +I  G++  LL E++  FDL  L N LK ERD  F +LGLQ LYDRYFLH N +R+E+
Sbjct: 268 SAFIHAGIRYELLDEALAAFDLERLGNALKPERDLQFGFLGLQTLYDRYFLHWNKARLEL 327

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRVAMGLAL+E +   RA+EFY LLSSF +M STPTLFNSGTRH QLSSC+LTTV
Sbjct: 328 PQVFFMRVAMGLALREDDPNARAIEFYELLSSFDYMASTPTLFNSGTRHSQLSSCYLTTV 387

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL GI+GA+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAV
Sbjct: 388 GDDLEGIYGAIRDNALLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAV 447

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ ++
Sbjct: 448 AVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRED 507

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP +V DLHDLYG  F   Y++YE  A++G+IK+F+KI A  LWRKMLT+LFET
Sbjct: 508 REWTLFSPSDVPDLHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFET 567

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH  + + 
Sbjct: 568 GHPWITFKDPCNLRSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIKDGEL 627

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D  +L  T+ TAVR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L +PY+S
Sbjct: 628 DVTRLERTVNTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSS 687

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--D 734
           PEAVE AD +ME +S+ A+ AS  LA ERGAY +++GSLW QG+ P+DS+GLL + R   
Sbjct: 688 PEAVEFADVAMEQLSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDG 747

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +L++N  SRL W  +++ +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN
Sbjct: 748 DLSLNTNSRLDWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSN 807

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTVVN  LV +LK   LWD  M++DLKY DGS+  I+RIP +LK  +ATAFEIDP 
Sbjct: 808 LSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPR 867

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  AT  EK+
Sbjct: 868 WLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT 927

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                              +  S   P  C+ D  +CE CQ
Sbjct: 928 -------------------APVSAPQPQVCSIDNPDCEACQ 949


>gi|302525966|ref|ZP_07278308.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
 gi|302434861|gb|EFL06677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
          Length = 967

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/911 (62%), Positives = 693/911 (76%), Gaps = 9/911 (0%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           PS A   P     V+VI+R+G V+ FD  KIS A+ KAF+AVEG  A+ S RV  ++  L
Sbjct: 31  PSAAEGAPSA---VRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVVAEL 87

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           TEQ    LL+H      +HIE IQDQVE +LM+ GHHK+ R YVLYR+ER    A    +
Sbjct: 88  TEQVEAALLRHTGPETALHIEQIQDQVELALMRGGHHKVARAYVLYRDER----AKAREA 143

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
            + A     L +   DGTL   +  R+  +V EA +GL+DVS++ VL+E  +N+YDG++ 
Sbjct: 144 AAPAHAEVALSVKGADGTLRPLDWARVSHVVGEAVAGLEDVSAEPVLAEAKRNLYDGITA 203

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +L  A I ++R L+E+EPNY+ V+AR LL+KLR E L+ +   P++A+  EM   Y  Y
Sbjct: 204 DELALAQIMAARVLVEQEPNYSFVSARLLLDKLRGEALSYLAGAPRQASQDEMTSEYAPY 263

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
           F  Y+   V+  L+   +  FDL  +   ++ ERD  F +LGLQ LYDRYF H NG R E
Sbjct: 264 FRAYLRRAVELELVDAELTTFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHNGVRFE 323

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQAFFMRVAMGLA++E  +E RA+EFY LLS+FHFM STPTLFNSGT   QLSSCFLTT
Sbjct: 324 LPQAFFMRVAMGLAIREDNREARAIEFYELLSTFHFMASTPTLFNSGTNRAQLSSCFLTT 383

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL  IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+ANDTA
Sbjct: 384 VDDDLDSIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTA 443

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV  
Sbjct: 444 VAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEA 503

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           NA WTLFSP+E  DLHDLYG  F   Y  YE  A RGEIKVFRK+ AV LWR+MLTMLFE
Sbjct: 504 NAEWTLFSPNETPDLHDLYGNAFAQRYREYEAAAARGEIKVFRKVRAVELWRRMLTMLFE 563

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NLL H     
Sbjct: 564 TGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTPEG 623

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D ++L  T+RTAVR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ AL  L +P+A
Sbjct: 624 LDTERLEKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFELGVPFA 683

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-- 733
           S EAV+ AD SME +S++AISAS +LA+ERG Y +F+GSLW +G+ PIDS+ LL + R  
Sbjct: 684 SEEAVKFADVSMEHLSYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQG 743

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D L ++ ++ L W  L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNLYVKS
Sbjct: 744 DGLDVDTSTTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLYVKS 803

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           NMSGDFTVVN  LV  LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI+ 
Sbjct: 804 NMSGDFTVVNPHLVKSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 863

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            W++++ S RQKWIDQAQSLNLY+  PSG+KLD +YR AW  GLKTTYYLR++SAT VEK
Sbjct: 864 KWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRAQSATHVEK 923

Query: 914 STLKGVDGKLN 924
           STL+G DGKLN
Sbjct: 924 STLRGTDGKLN 934


>gi|226227155|ref|YP_002761261.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090346|dbj|BAH38791.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 957

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 565/929 (60%), Positives = 715/929 (76%), Gaps = 4/929 (0%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVI+RN  ++ FDPSKI+ A+ KAF+AVEG  A+ S RV+DI++      V  L +H  +
Sbjct: 29  QVIRRNRTLSPFDPSKIAVAMTKAFVAVEGSSAATSARVRDIVERRCVSVVEALTRHADA 88

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA-PKLKIM 148
              +HIE+IQDQVE +LM+ GHHK+ R YVLYREER+ +R      ++   +A   ++  
Sbjct: 89  QRALHIEEIQDQVELALMRGGHHKVARAYVLYREERARLRRESGAEETTPGVATSTVRFR 148

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G L + +   L +++++AC GL  VS+  VL ET +N+YDG++  +L  A I ++RT
Sbjct: 149 TATGELRTIDQGHLGLVIDDACDGLDGVSAVSVLDETLRNIYDGITADELSLAPILAART 208

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E EPNYA V+AR LLE+LR EVL+ ++ +  +A   +M   Y +YF  ++  G+   L
Sbjct: 209 LVETEPNYAYVSARLLLERLRAEVLSGIHGQEVEARPADMTRHYVDYFPLFVARGIDTGL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +  FDL  LA+ L+ ERD AF YLGLQ LYDRY LH +G R+E+PQ FFMRVAMGL
Sbjct: 269 LDPELARFDLHRLASALRPERDLAFRYLGLQTLYDRYLLHNDGVRLELPQTFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           AL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT   QLSSCFLTTVPDDL GIF +++
Sbjct: 329 ALREVDREARAIEFYELLSSFDFMCSTPTLFNSGTPRAQLSSCFLTTVPDDLDGIFKSVK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+LAKYSGGLGNDW+ VRGLG++I GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAV
Sbjct: 389 DNALLAKYSGGLGNDWSRVRGLGSYIRGTNGRSQGVVPFLKVANDTAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV ++  WTLFSPDEV 
Sbjct: 449 CAYLETWHIDIEDFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVEEDGDWTLFSPDEVP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDLYG+ F   Y  +E +A+RGE+ V +++ AV LWR+MLTMLFETGHPWITFKDPCN
Sbjct: 509 DLHDLYGRAFAERYVQHEIRAERGEVTVHKRVKAVDLWRRMLTMLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GV+HSSNLCTEITLN+S  E AVCNLGS+NL  H +    D  +LA+T+RTA
Sbjct: 569 LRSPQQHTGVIHSSNLCTEITLNTSDSEVAVCNLGSVNLANHISGGGIDRARLANTVRTA 628

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN +TI +A++SN  HR +GLG+MGFQ ALH+L +PYAS  A+  ADESME
Sbjct: 629 VRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALHMLRVPYASEAAIRFADESME 688

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747
           F+S+ AI+AS +LA ERG+Y SF GSLW +G+ PIDS+ LL   R   L  +R+SRL W 
Sbjct: 689 FLSYEAIAASSDLAVERGSYGSFNGSLWQRGILPIDSLALLDASREGRLECDRSSRLDWS 748

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++RV+T G+RNSN +AIAPTATI+NICGVSQSI+PSY+NL+VKSNMSG+FT VN +LV
Sbjct: 749 SLRERVQTQGIRNSNLLAIAPTATISNICGVSQSIEPSYRNLFVKSNMSGEFTEVNEYLV 808

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +LK R LWDE M+ DLKY DGS+G I+R+P+DLK+++ TAFE+D  WLIE+A+RRQKWI
Sbjct: 809 QDLKSRGLWDEVMVGDLKYFDGSLGPIDRVPEDLKQLYMTAFEVDCAWLIEAAARRQKWI 868

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQAQSLNLY+  P+G++LD +YR AW  GLKTTYYLRS++AT VEKSTL   DGKLNAV 
Sbjct: 869 DQAQSLNLYVARPNGRQLDTLYRLAWRRGLKTTYYLRSQAATHVEKSTLTRTDGKLNAVA 928

Query: 928 VTDPNSSTHSLGI--PSSCTSDTECEVCQ 954
           V    + +    +  P+    + +CE CQ
Sbjct: 929 VAAAQTVSAIEAVTAPACSIDNPDCEACQ 957


>gi|311696540|gb|ADP99413.1| ribonucleotide-diphosphate reductase subunit alpha [marine
           bacterium HP15]
          Length = 921

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/947 (56%), Positives = 688/947 (72%), Gaps = 33/947 (3%)

Query: 14  AFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           +  +LA P P      + +QVIKRNG +  FDPSKIS A+ KAF+AVEG  A+ S R+ D
Sbjct: 2   SASALAEPRPTSHTDTESLQVIKRNGTLVGFDPSKISIAVTKAFLAVEGDTAAGSARIND 61

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +  +T+Q +  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYREE +  RA
Sbjct: 62  AVHRVTDQVIQAIGRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERA 121

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
             +         P L +    G +   +   +++ VE+A +GL+ +    ++ +   N+Y
Sbjct: 122 RHAPV----EAHPHLTVKKTSGEIAPLDLGLMKLQVEQAATGLEGIDGDSLVDDALTNLY 177

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG++E D+ +ALI ++R+ IE+EP+Y+ VTAR LLE+    +               +  
Sbjct: 178 DGIAEEDVLSALIMTARSRIEREPDYSAVTARLLLEQ----LRLENAAALGLPISLPLAE 233

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           +YP+    ++E G++  LL E++  FDL  L   L+ ERD  F +LGLQ LYDRYFLH N
Sbjct: 234 IYPQALSAFVEAGIRYELLDEALAAFDLERLGAALQPERDLQFGFLGLQTLYDRYFLHWN 293

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
            +R+E+PQ FFMRVAMGLAL+E +   RA+EFYNLLSSF +M STPTLFNSGTRH QLSS
Sbjct: 294 KARLELPQVFFMRVAMGLALREDDPNARAIEFYNLLSSFDYMASTPTLFNSGTRHSQLSS 353

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+LTTV DDL  I+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV
Sbjct: 354 CYLTTVGDDLEDIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKV 413

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL +
Sbjct: 414 VNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLI 473

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +R+ ++  WTLFSP +  DLHDLYG  F   YE+YE  A++G+IK+F+KI A  LWRKML
Sbjct: 474 ERMREDRDWTLFSPSDAPDLHDLYGNAFRERYEHYEALAEQGKIKLFKKIPAKQLWRKML 533

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T+LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH
Sbjct: 534 TVLFETGHPWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSVNLTAH 593

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            AN + D  +L  T+ TAVR+LDNVIDIN + + +A+ SN  HR +GLG+MGFQ AL+ L
Sbjct: 594 IANGELDVQRLEQTVNTAVRMLDNVIDINYYAVPQARNSNLKHRPVGLGIMGFQDALYQL 653

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY+SPEAVE AD +ME +S+ AI AS  LA ERGAY S++GSLW QG+ PIDSI LL 
Sbjct: 654 GLPYSSPEAVEFADVAMEQLSYFAIRASATLAGERGAYESYEGSLWQQGILPIDSINLLK 713

Query: 731 EVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           E R   +L++N  +RL W  +++ + T GMRNSN MAIAPTATI+NI GVSQSI+P+YQN
Sbjct: 714 ENRREGDLSVNTNARLDWSPVRELIATNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQN 773

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+VKSN+SG+FTVVN  LV +LK   LWD  M++DLKY DGS+  I+RIP++LK  +ATA
Sbjct: 774 LFVKSNLSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATA 833

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEID  WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW  GLKTTYYLRS  A
Sbjct: 834 FEIDARWLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGA 893

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           T  EK+                   +  +   P  C+  D +CE CQ
Sbjct: 894 TGAEKT-------------------APVAAPQPQVCSIDDPDCEACQ 921


>gi|253998798|ref|YP_003050861.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
           sp. SIP3-4]
 gi|253985477|gb|ACT50334.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
           sp. SIP3-4]
          Length = 937

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/940 (59%), Positives = 697/940 (74%), Gaps = 24/940 (2%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  +QVI+R+G    F   KIS A+ KAF+AV G+ ++ S  ++  ++ LT+  V  L
Sbjct: 13  AALPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISSHMRTEVQALTDTVVAAL 72

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           ++   +   +HIEDIQDQVE +LM+SG H + R YVLYRE+        +   +    AP
Sbjct: 73  VRRKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREK------RAAERAAQQAPAP 126

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202
            L ++  DG  +  + + L  +V EAC  L D V   +++ +  +++YDG+   ++  AL
Sbjct: 127 TLHVLQ-DGKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAIRDLYDGMPFDEVRRAL 185

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I S+R+LIE+EP Y  VTAR  L+ +R EVL       +  +H  M   Y EYF +YI+ 
Sbjct: 186 ILSARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKT 239

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+ A LL E +  FDL  LA+ L  +RD  F YLGLQ LYDRYFLHI   RIE+PQ FFM
Sbjct: 240 GIAAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFM 299

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL G
Sbjct: 300 RVAMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDG 359

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGG
Sbjct: 360 IYQAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGG 419

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV  NA WTLF
Sbjct: 420 KRKGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLF 479

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWIT
Sbjct: 480 SPSDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWIT 539

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDY 618
           FKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH          D 
Sbjct: 540 FKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQ 599

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KLA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS  
Sbjct: 600 AKLAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASSA 659

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737
           AVE AD +ME + ++A  AS  LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R   + 
Sbjct: 660 AVEFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVE 719

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++R+S L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG
Sbjct: 720 VDRSSTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSG 779

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTVVN  LV +LK R LWDE MI+D+KY+DGS+  IER+P DLK+++ATAFE+DP+WL+
Sbjct: 780 EFTVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLV 839

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E+A+RRQKWIDQAQSLNLY   PSGKKL+ +Y  AWL GLKTTYYLRS  ATS EKST  
Sbjct: 840 EAAARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKST-- 897

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS---SCTSDTECEVCQ 954
           G  G+LNAV    P S+      P        D  CE CQ
Sbjct: 898 GQGGELNAVSSGLPVSAASPSAEPEPKQCLIDDPGCEACQ 937


>gi|313200885|ref|YP_004039543.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus
           sp. MP688]
 gi|312440201|gb|ADQ84307.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus
           sp. MP688]
          Length = 937

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/940 (59%), Positives = 697/940 (74%), Gaps = 24/940 (2%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +  +QVI+R+G    F   KIS A+ KAF+AV G+ ++ S  ++  ++ LT+  V  L
Sbjct: 13  AALPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISTHMRTEVQALTDTVVAAL 72

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           ++   +   +HIEDIQDQVE +LM+SG H + R YVLYRE+        +   +    AP
Sbjct: 73  VRRKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREK------RAAERAAQQAPAP 126

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202
            L ++  DG  +  + + L  +V EAC  L D V   +++ +  +++YDG+   ++  AL
Sbjct: 127 TLHVLQ-DGKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAMRDLYDGMPFDEVRRAL 185

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I S+R+LIE+EP Y  VTAR  L+ +R EVL       +  +H  M   Y EYF +YI+ 
Sbjct: 186 ILSARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKA 239

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+ A LL E +  FDL  LA+ L  +RD  F YLGLQ LYDRYFLHI   RIE+PQ FFM
Sbjct: 240 GIAAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFM 299

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVAMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL G
Sbjct: 300 RVAMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDG 359

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGG
Sbjct: 360 IYQAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGG 419

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV  NA WTLF
Sbjct: 420 KRKGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLF 479

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWIT
Sbjct: 480 SPSDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWIT 539

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDY 618
           FKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGS+NL+AH          D 
Sbjct: 540 FKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQ 599

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KLA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS  
Sbjct: 600 TKLAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASAA 659

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737
           AVE AD +ME + ++A  AS  LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R   + 
Sbjct: 660 AVEFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVE 719

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           ++R+  L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG
Sbjct: 720 VDRSRTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSG 779

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FTVVN  LV +LK R LWDE MI+D+KY+DGS+  IER+P DLK+++ATAFE+DP+WL+
Sbjct: 780 EFTVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLV 839

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E+A+RRQKWIDQAQSLNLY   PSGKKL+ +Y  AWL GLKTTYYLRS  ATS EKST  
Sbjct: 840 EAAARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKST-- 897

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS---SCTSDTECEVCQ 954
           G  G+LNAV    P  +  +   P        D +CE CQ
Sbjct: 898 GQGGELNAVSSALPAVAAATNAEPEPKQCLIDDPDCEACQ 937


>gi|114321251|ref|YP_742934.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227645|gb|ABI57444.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 928

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 540/927 (58%), Positives = 688/927 (74%), Gaps = 18/927 (1%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVI+RNG +T+FDP KI  A+ KAF+AVEG+ ++ + R+Q +   LT Q V  L +   +
Sbjct: 18  QVIRRNGALTAFDPDKIQLAMKKAFLAVEGERSADAARIQQVTAELTAQVVQALTRR-PT 76

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           A  +HIEDIQDQVE +LM++G HK+ R YVLYREE +  R  ++  +      P+L +  
Sbjct: 77  ATPIHIEDIQDQVELALMRAGEHKVARAYVLYREEHARKRRQEATDEP-----PRLHMTR 131

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG  +  +   L  ++  AC  L D   + V  E ++N+YDG++E ++  ALI S+R+L
Sbjct: 132 TDGEQVPLDESLLRRVLHHACHELADTDPERVAREAWRNLYDGVTEQEVHKALILSARSL 191

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           IE+EP Y  V AR L  +L  E L  +      A   +    Y +YF RYI  GV+  LL
Sbjct: 192 IEQEPAYGHVAARLLQHQLNGEALRFLDFPYDGAPGADPG--YTDYFARYIRRGVELELL 249

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            E ++ FDL  LA  L  ERD  F YLGLQ LYDRY  H +G+R E+PQAFFMRVAMGL 
Sbjct: 250 DEQLLTFDLERLAEALMPERDLQFNYLGLQTLYDRYLQHWDGTRFELPQAFFMRVAMGLT 309

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L+E E+E+RA+EFY LLSSF FM STPTLFNSGTR PQLSSC+LT+VPDDL GI+GA+++
Sbjct: 310 LQEVEREERAIEFYRLLSSFDFMSSTPTLFNSGTRRPQLSSCYLTSVPDDLGGIYGAIRD 369

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NA+L+K++GGLGNDWT VR +GAHI GTNG+SQGV+PFLKVA+DTAVAVNQGGKRKGAVC
Sbjct: 370 NALLSKFAGGLGNDWTRVRAMGAHIKGTNGRSQGVVPFLKVASDTAVAVNQGGKRKGAVC 429

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTA+W+PDLFM+R   +A WTLFSPD+ + 
Sbjct: 430 AYLETWHLDVEEFLELRKNTGDDRRRTHDMNTAHWVPDLFMQRAEADADWTLFSPDDAAH 489

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LH+LYG+ F+ AYE+ E +A RGEI+ ++ +SA  LWR+ML MLFETGHPWITFKDPCN+
Sbjct: 490 LHELYGQAFKAAYEDLEARAARGEIRNYKVVSAKQLWRRMLGMLFETGHPWITFKDPCNL 549

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGS+NL AH   +  D+++L +T+RTA+
Sbjct: 550 RSPQQHAGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLAAHTTPDGLDHERLRNTVRTAM 609

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVIDIN +++ +A+++N  HR +GLG+MGFQ AL+   +PYAS EAV  AD S E 
Sbjct: 610 RMLDNVIDINYYSVPQARRANLRHRPVGLGVMGFQDALYAQDLPYASDEAVAFADRSQEA 669

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDE 748
           IS++AI AS +LA+ERGAY SF+GSLW +G  P+DSI  + E R  +  M+ +S L W  
Sbjct: 670 ISYYAIEASADLARERGAYPSFEGSLWQRGELPLDSIQRVVEARDGDCTMDTSSSLDWAA 729

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++V+T GMRNSNC+AIAPTATIANI GVSQ I+P+++NLYVKSN+SG+FTVVN  LV 
Sbjct: 730 LREKVRT-GMRNSNCLAIAPTATIANIVGVSQGIEPAFKNLYVKSNLSGEFTVVNPALVR 788

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            LK   LWD  M++DLKY+DGS+  I R+P++LK+  ATAFE+D  WL+++ SRRQKW+D
Sbjct: 789 ALKAYGLWDAVMVNDLKYYDGSVQPIGRVPEELKQRFATAFELDSEWLVQAGSRRQKWLD 848

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG-KLNAVP 927
           Q+QSLNLY+ EPSG KLD +YRQAW +GLKTTYYLRS  AT VEKST+      +LNAV 
Sbjct: 849 QSQSLNLYMAEPSGPKLDALYRQAWRLGLKTTYYLRSTGATQVEKSTMDPARANRLNAVS 908

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                      G  S    D ECE CQ
Sbjct: 909 AA-------PGGGQSCSVDDPECEACQ 928


>gi|149375673|ref|ZP_01893442.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
 gi|149360075|gb|EDM48530.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
          Length = 921

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 525/939 (55%), Positives = 671/939 (71%), Gaps = 30/939 (3%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
                     +QVIKRNG +  FD SKIS A+ KAF+AVEG  A+ S R+ D ++ +T Q
Sbjct: 10  GQSASTSTASLQVIKRNGALVGFDASKISVAVTKAFLAVEGDEAAGSARIHDSVERVTHQ 69

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            +  + +  K+   VHIEDIQDQVE +LM++   K+ R YVLYRE  +  RA    S + 
Sbjct: 70  VMQAISRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREAHAQERA----SLAP 125

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
               P L +   +G     +   +++ VE A   L+ +  + ++    +N+YDG++E ++
Sbjct: 126 VEAHPTLTVKKANGEAAPLDLGLMKVQVERASQELEGIDGESLVEGALRNLYDGIAEEEV 185

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            +ALI ++R  IE+EP+Y+ VTAR LLE+LR E  T +           +  +YP+    
Sbjct: 186 LSALIMTARGRIEQEPDYSAVTARLLLEQLRLETATALKLPLSLP----LAEIYPQALST 241

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           +IE+G+   LL E+M  FDL  L   LK ERD+ F +LGLQ LYDRYFL+  G R+E+PQ
Sbjct: 242 FIEQGIHYELLDEAMAAFDLERLGAALKPERDYQFGFLGLQTLYDRYFLNWKGDRLELPQ 301

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            FFMRV+MGLAL+E +   RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV D
Sbjct: 302 VFFMRVSMGLALQEDDPNARAIEFYDLLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVQD 361

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL GI+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG SQGV+PFLKV NDTAVAV
Sbjct: 362 DLEGIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGSSQGVVPFLKVVNDTAVAV 421

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+  +  
Sbjct: 422 NQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRSDQD 481

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLFSP++  DLHDLYG  F   Y+ YE  A RGEI +F+ +SA  LWRKMLT+LFETGH
Sbjct: 482 WTLFSPNDTPDLHDLYGNAFRERYQEYEAMAARGEITLFKTVSAKQLWRKMLTVLFETGH 541

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           PWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL AH  N + D 
Sbjct: 542 PWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSINLAAHVHNGELDV 601

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L  T+ TAVR+LDNV+DIN + + +A+ SN  HR +GLGLMGFQ AL+ L++PY S E
Sbjct: 602 QRLERTVNTAVRMLDNVVDINYYAVPQARNSNFKHRPVGLGLMGFQDALYRLNLPYTSAE 661

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DEL 736
           AVE AD +ME IS+ AI AS  LA ERGAY +++GSLW +G+ PIDSI LL   R   +L
Sbjct: 662 AVEFADVAMEQISYFAIRASAVLAGERGAYETYEGSLWHEGILPIDSINLLKANRREGDL 721

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
           ++N  + L W  +++ +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+S
Sbjct: 722 SLNTDTLLDWTPVRELIARNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLS 781

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTVVN  LV +LK   LWD  M++DLKY DGS+  I+RIP  LK  +ATAFEID  WL
Sbjct: 782 GEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAALKARYATAFEIDARWL 841

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ +W  GLKTTYYLRS  AT  EK+  
Sbjct: 842 VEAAARRQKWLDQAQSLNLYMAEPSGKKLDELYQLSWERGLKTTYYLRSLGATGAEKT-- 899

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                            +  +   P  C+ D  +CE CQ
Sbjct: 900 -----------------APVAAPQPQVCSIDEPDCEACQ 921


>gi|160872690|ref|ZP_02062822.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
 gi|159121489|gb|EDP46827.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
          Length = 946

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 538/928 (57%), Positives = 674/928 (72%), Gaps = 20/928 (2%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  +DPSKI  AI KAF+AVEG  A+ S R+ + +  LT+Q  T L Q + 
Sbjct: 37  LQVIKRNGKLVDYDPSKIRVAITKAFLAVEGGQAALSTRIHERVSQLTQQITTILQQRHP 96

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + IE IQDQVE +LM+   H++ R YVLYREER  +RA             +L+I 
Sbjct: 97  QGGTLSIETIQDQVELALMRVEAHQVARAYVLYREERRKMRAETKP-----HSEIQLQIT 151

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + DG+    +  +L +++ E C+ L+DV  + +L ET +N+YDG+  +D++ ALI S+R+
Sbjct: 152 LTDGSQRPLDLIQLSLLITETCNDLKDVKHERILQETLRNLYDGMPAADIDKALIISARS 211

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L+E +P Y   TARFLL  L  E L  +         H    +Y  YF  YI+ G++  L
Sbjct: 212 LVEHDPQYTYATARFLLRTLYAEALHFLELP---LHTHRHSGIYSHYFQHYIKRGIQLEL 268

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L   +  FDL  L+  L  ERD  F YLGLQ LYDRYFLH +  R E+PQAFFMRVAMGL
Sbjct: 269 LDPQLHTFDLEQLSQALLPERDQQFTYLGLQTLYDRYFLHADHIRFELPQAFFMRVAMGL 328

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           A  E+ K  RA+EFY+LLSSF +M STPTLFNSGT  PQLSSCFLTTV DDL  I+ A++
Sbjct: 329 AQHESNKNDRAIEFYHLLSSFDYMASTPTLFNSGTLRPQLSSCFLTTVTDDLDHIYSAIK 388

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NA+L+K++GGLGNDWTPVR +GA I GTNGKS GV+PFL VAN +AVAVNQGGKRKGAV
Sbjct: 389 DNALLSKFAGGLGNDWTPVRAMGARIKGTNGKSLGVVPFLNVANASAVAVNQGGKRKGAV 448

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR+ +   WTLFSPDE  
Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFSPDETP 508

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHD +G  FE  Y+ YE +A RGEIK F+ I A  LWRKML++LFETGHPWITFKDPCN
Sbjct: 509 DLHDAFGSAFEEKYQAYEAKALRGEIKNFKTIPAATLWRKMLSLLFETGHPWITFKDPCN 568

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRT 627
           +RSPQQHVG +HSSNLCTEITLN+S +E AVCNLGSINL  H   + + +  KL  TIRT
Sbjct: 569 LRSPQQHVGTIHSSNLCTEITLNTSIDEIAVCNLGSINLPQHLTESGEIEKTKLRQTIRT 628

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+R+LDNVIDIN +T+ +A++SN  HR IGLGLMGFQ AL+ L +PYAS  A+  AD++M
Sbjct: 629 AIRMLDNVIDINYYTVPQARRSNLKHRPIGLGLMGFQDALYQLRLPYASDAAITFADQTM 688

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPW 746
           E IS++AI AS +LA ERGAY SF GSLW QGV P+DSI  L + R E    +RT+RL W
Sbjct: 689 ELISYYAIEASSDLAHERGAYESFPGSLWSQGVLPLDSIARLQKARGEFLDQDRTARLDW 748

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L+K+V   GMR+SNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSNMSG+FT++N +L
Sbjct: 749 DTLRKKVM-HGMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFTMINPYL 807

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           +N+LK   LWD  M++DLKY+DGS+  IERIPD LK+++ATAFEI   WL+E+ SRRQKW
Sbjct: 808 INDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAGSRRQKW 867

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQ+QSLNLY+   SGKKLD +Y+Q WL GLKT+YYLR+  AT  EK+TL          
Sbjct: 868 IDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTSYYLRTMGATHTEKATL---------A 918

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                +   +++  P+    D +CE CQ
Sbjct: 919 KSHLNSVHMNTVATPACSIVDPDCESCQ 946


>gi|212212092|ref|YP_002303028.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii CbuG_Q212]
 gi|212010502|gb|ACJ17883.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           CbuG_Q212]
          Length = 941

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/929 (59%), Positives = 687/929 (73%), Gaps = 18/929 (1%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +  
Sbjct: 29  QLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRW 88

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S  +VHIE IQD+VE +LM +G HK  R YVLY     + R  Q   +  +     + I
Sbjct: 89  PSGGVVHIETIQDKVELALMYAGLHKAARAYVLY----REERRKQREEQKASEAENTIHI 144

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++R
Sbjct: 145 TLDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTAR 204

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TL+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++  
Sbjct: 205 TLVENEPNYTYVTARLLLHDLYREVLNGLN-LPQDLMHEDIAHYYPEAFKNFIRHGIETE 263

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
            LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMG
Sbjct: 264 HLHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMG 323

Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           LA  E   + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GA
Sbjct: 324 LAQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGA 383

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKG
Sbjct: 384 LKDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKG 443

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDE
Sbjct: 444 AVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDE 503

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD 
Sbjct: 504 VPDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDA 562

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CNIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +
Sbjct: 563 CNIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTK 622

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+S
Sbjct: 623 TAIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQS 682

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLP 745
           ME IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R      N    L 
Sbjct: 683 METISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLD 742

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +
Sbjct: 743 WNALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPY 802

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQK
Sbjct: 803 LVRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQK 862

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNA
Sbjct: 863 WIDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA 920

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V   +  +        +    D +CE CQ
Sbjct: 921 VTGQNNPN--------ACAIDDPDCEACQ 941



 Score = 37.9 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 83/211 (39%), Gaps = 17/211 (8%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSE 195
           +A    +L+++  DG ++ +++ R+ + +++A   ++  ++     + E    + D ++ 
Sbjct: 23  EAIQPGQLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQIT- 81

Query: 196 SDLETAL--------IFSSRTLIEKEPNYAKV--TARFLLEKLRREVLTTVYKKPQKATH 245
            DL            I + +  +E    YA +   AR  +            +K  +A +
Sbjct: 82  -DLFHKRWPSGGVVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAEN 140

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                L  +     +++   AR++H +  D + V     L+  ++  F+ + L+ +Y   
Sbjct: 141 TIHITL-DDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGL 199

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +         P   +  V   L L +  +E
Sbjct: 200 VMTARTLVENEPNYTY--VTARLLLHDLYRE 228


>gi|29654844|ref|NP_820536.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii RSA 493]
 gi|161831609|ref|YP_001597388.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii RSA 331]
 gi|29542112|gb|AAO91050.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           RSA 493]
 gi|161763476|gb|ABX79118.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 331]
          Length = 941

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/929 (59%), Positives = 686/929 (73%), Gaps = 18/929 (1%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +  
Sbjct: 29  QLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRW 88

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S   VHIE IQD+VE +LM +G HK  R YVLY     + R  Q   +  +     + I
Sbjct: 89  PSGGAVHIETIQDKVELALMYAGLHKAARAYVLY----REERRKQREEQKASEAENTIHI 144

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++R
Sbjct: 145 TLDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTAR 204

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TL+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++  
Sbjct: 205 TLVENEPNYTYVTARLLLHDLYREVLNGLN-LPQDLMHEDIAHYYPEAFKNFIRHGIETE 263

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
            LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMG
Sbjct: 264 HLHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMG 323

Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           LA  E   + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GA
Sbjct: 324 LAQSEGEARNQRAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGA 383

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKG
Sbjct: 384 LKDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKG 443

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDE
Sbjct: 444 AVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDE 503

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD 
Sbjct: 504 VPDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDA 562

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CNIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +
Sbjct: 563 CNIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTK 622

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+S
Sbjct: 623 TAIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQS 682

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLP 745
           ME IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R      N    L 
Sbjct: 683 METISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLD 742

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +
Sbjct: 743 WNALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPY 802

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQK
Sbjct: 803 LVRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQK 862

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNA
Sbjct: 863 WIDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA 920

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V   +  +        +    D +CE CQ
Sbjct: 921 VTGQNNPN--------ACAIDDPDCEACQ 941



 Score = 37.9 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 83/211 (39%), Gaps = 17/211 (8%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSE 195
           +A    +L+++  DG ++ +++ R+ + +++A   ++  ++     + E    + D ++ 
Sbjct: 23  EAIQPGQLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQIT- 81

Query: 196 SDLETAL--------IFSSRTLIEKEPNYAKV--TARFLLEKLRREVLTTVYKKPQKATH 245
            DL            I + +  +E    YA +   AR  +            +K  +A +
Sbjct: 82  -DLFHKRWPSGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAEN 140

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                L  +     +++   AR++H +  D + V     L+  ++  F+ + L+ +Y   
Sbjct: 141 TIHITL-DDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGL 199

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +         P   +  V   L L +  +E
Sbjct: 200 VMTARTLVENEPNYTY--VTARLLLHDLYRE 228


>gi|153208311|ref|ZP_01946690.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154706203|ref|YP_001423854.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii Dugway 5J108-111]
 gi|165919213|ref|ZP_02219299.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 334]
 gi|212219267|ref|YP_002306054.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella
           burnetii CbuK_Q154]
 gi|120576095|gb|EAX32719.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355489|gb|ABS76951.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           Dugway 5J108-111]
 gi|165917074|gb|EDR35678.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella
           burnetii RSA 334]
 gi|212013529|gb|ACJ20909.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii
           CbuK_Q154]
          Length = 941

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/929 (59%), Positives = 686/929 (73%), Gaps = 18/929 (1%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++V+KR+G V  +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+  LT+Q      +  
Sbjct: 29  QLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRW 88

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S   VHIE IQD+VE +LM +G HK  R YVLY     + R  Q   +  +     + I
Sbjct: 89  PSGGAVHIETIQDKVELALMYAGLHKAARAYVLY----REERRKQREEQKASEAENTIHI 144

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            +DDG  I  +   L  +V  ACS L+ V +  +L ET  N++DG++  D+   L+ ++R
Sbjct: 145 TLDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTAR 204

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           TL+E EPNY  VTAR LL  L REVL  +   PQ   H ++   YPE F  +I  G++  
Sbjct: 205 TLVENEPNYTYVTARLLLHDLYREVLNGLN-LPQDLMHEDIAHYYPEAFKNFIRHGIETE 263

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
            LH ++  FDL YLA  LK ERD  F YL LQ LYDRY +H    RIE+PQ FFMRVAMG
Sbjct: 264 HLHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMG 323

Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           LA  E   + +RAVEFYN+LSSF FM STPTLFNSGT  PQLSSCFLTTVPD L GI+GA
Sbjct: 324 LAQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGA 383

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKG
Sbjct: 384 LKDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKG 443

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSPDE
Sbjct: 444 AVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDE 503

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V DLHD +G+ FEIAY  YE +A RGEI+  + ISA++LWRK+L+MLFETGHPW+TFKD 
Sbjct: 504 VPDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDA 562

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           CNIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H  + + D +KLA T +
Sbjct: 563 CNIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTK 622

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TA+R+LDNVIDIN +++ +A+ SN  HR IGLGLMGFQ AL+L +IPYAS  AV+ AD+S
Sbjct: 623 TAIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQS 682

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLP 745
           ME IS++AI AS+ELA+ERG Y +F  SLW QG+ PIDSI LL + R      N    L 
Sbjct: 683 METISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLD 742

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L+K+V   GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N +
Sbjct: 743 WNALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPY 802

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV ELK R LWD  M+ DLKY++GS+  I+RIP +LKK++ATAFE++P WL+E+ASRRQK
Sbjct: 803 LVRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQK 862

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS  AT  EK+T+   D  LNA
Sbjct: 863 WIDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA 920

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V   +  +        +    D +CE CQ
Sbjct: 921 VTGQNNPN--------ACAIDDPDCEACQ 941



 Score = 37.9 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 83/211 (39%), Gaps = 17/211 (8%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSE 195
           +A    +L+++  DG ++ +++ R+ + +++A   ++  ++     + E    + D ++ 
Sbjct: 23  EAIQPGQLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQIT- 81

Query: 196 SDLETAL--------IFSSRTLIEKEPNYAKV--TARFLLEKLRREVLTTVYKKPQKATH 245
            DL            I + +  +E    YA +   AR  +            +K  +A +
Sbjct: 82  -DLFHKRWPSGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAEN 140

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
                L  +     +++   AR++H +  D + V     L+  ++  F+ + L+ +Y   
Sbjct: 141 TIHITL-DDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGL 199

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
            +         P   +  V   L L +  +E
Sbjct: 200 VMTARTLVENEPNYTY--VTARLLLHDLYRE 228


>gi|198284353|ref|YP_002220674.1| ribonucleoside-diphosphate reductase subunit alpha
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665782|ref|YP_002427015.1| ribonucleotide-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248874|gb|ACH84467.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517995|gb|ACK78581.1| ribonucleotide-diphosphate reductase, alpha subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 948

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/972 (56%), Positives = 689/972 (70%), Gaps = 45/972 (4%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P+     G+    PS A          +VI+RN  + +FD SKI  A+ KAF+AVEG  
Sbjct: 3   KPTTQAVIGNPAYDPSEASH-------YKVIRRNNAMVNFDASKIHIAVTKAFLAVEGGS 55

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
            + S RV+D++  LTEQ +  L +        HIEDIQDQVE +LM++G H++ R YVLY
Sbjct: 56  GAASARVRDLVSRLTEQVIEALKRRQPGGGTFHIEDIQDQVELALMRAGEHEVARAYVLY 115

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180
             E       Q  +       P +++   +G+  + +  RL  +++EACSGL   VS   
Sbjct: 116 -REERARERRQQAAAETPADVPVIRVSYPNGSQRALDMVRLRAVIDEACSGLGTAVSIDA 174

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L  T KN+YDG+SE +L  A I +SR LIE++P YA  +AR LL+++R EVL       
Sbjct: 175 ILGNTVKNLYDGISEDELFQAPILASRVLIERDPAYAYASARLLLDRVRWEVLG------ 228

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           + AT  EM   YP+YF  Y++ G++  L+   +  +DL  +   L+ ERD  F+YLG+QI
Sbjct: 229 EAATQAEMTARYPQYFRDYLQTGIQNELIDPRLGQYDLERITAALRPERDLDFQYLGMQI 288

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLH+   RIE+PQAF+MRVAMGLA+ E ++E  A+ FY +LSSF F+ STPTLFN
Sbjct: 289 LYDRYFLHVRERRIELPQAFWMRVAMGLAMNEVDRETHAIAFYEVLSSFDFVSSTPTLFN 348

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT  PQLSSCFLTTV DDL  I+ A++ENAML+K+SGGLGNDWTPVR LG+ I GTNGK
Sbjct: 349 AGTLRPQLSSCFLTTVGDDLDDIYEAIKENAMLSKFSGGLGNDWTPVRALGSFIKGTNGK 408

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN
Sbjct: 409 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 468

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFM+RV  NA WTLFSP+E  DLHDL G  F   YE+YER AD G I++F++I
Sbjct: 469 TANWIPDLFMERVENNAMWTLFSPNETPDLHDLTGSAFRERYEHYERMADAGGIELFKRI 528

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A+ LWRKMLTMLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVC
Sbjct: 529 PAIHLWRKMLTMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNAKEIAVC 588

Query: 601 NLGSINLLAHFANN-----------------QFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           NLGS+NL++H                       D +KL  TIR A+R+LDNVID+N + +
Sbjct: 589 NLGSVNLVSHLRAVADAGALREDSTPEELLAMMDGEKLHHTIRVAMRMLDNVIDMNYYAV 648

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            KA+ SN  HR +GLGLMGF  AL  + IPYAS  A+  AD S E IS+HAI AS +LA+
Sbjct: 649 AKARNSNLRHRPVGLGLMGFSDALLQMRIPYASAAALAFADISQEVISYHAIDASADLAR 708

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ERG+Y SF GSLW QG+ PIDSI LLA  R+  + ++R+  L W  L+ +V+  GMRNSN
Sbjct: 709 ERGSYQSFPGSLWSQGILPIDSIDLLAAGREHGVDVDRSQHLDWATLRSKVRG-GMRNSN 767

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           C+AIAPTATI+NI GVSQ I+P YQNLYVKSN+SG+FTVVNS+LV++LK+ +LWDE M++
Sbjct: 768 CLAIAPTATISNIVGVSQGIEPIYQNLYVKSNLSGEFTVVNSYLVHDLKRLELWDEVMVN 827

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           DLKY DGS+  ++RIP  +K ++A AFE DP WL+E+A+RRQKW+DQAQSLNLY  +PSG
Sbjct: 828 DLKYFDGSVMPVDRIPASIKPLYANAFETDPEWLVEAAARRQKWLDQAQSLNLYFGQPSG 887

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           KK+D IYR AW  GLKTTYYLRS  AT+ EKST++   G LNAV    P +         
Sbjct: 888 KKIDEIYRLAWKRGLKTTYYLRSLGATAAEKSTVQ--TGTLNAVVSGQPKA--------- 936

Query: 943 SCTSDTECEVCQ 954
               D  CE CQ
Sbjct: 937 CAIDDPTCEACQ 948


>gi|169634185|ref|YP_001707921.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii SDF]
 gi|169152977|emb|CAP02025.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           baumannii]
          Length = 943

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/961 (55%), Positives = 687/961 (71%), Gaps = 42/961 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P +I   QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LT
Sbjct: 2   SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R   + + 
Sbjct: 59  EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARKDTNSNH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L++   +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ES
Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKES 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L ++L    L  +      A +           
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NAL 225

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++GV+  LL   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 226 EAFLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S
Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
            EAV+ ADESME IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E 
Sbjct: 645 DEAVKFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N  LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P 
Sbjct: 765 LSGEFTVINPCLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKGVDGKLNAVPVTDPNSSTH--------------------SLGIPSSCTSD-TECEVC 953
           T+    G LNAV      ++                      +  +P +C+ D  +CE C
Sbjct: 885 TIN--TGALNAVKPATVEAAPAVAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEAC 942

Query: 954 Q 954
           Q
Sbjct: 943 Q 943


>gi|169797063|ref|YP_001714856.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AYE]
 gi|184157024|ref|YP_001845363.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii ACICU]
 gi|213156531|ref|YP_002318192.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           baumannii AB0057]
 gi|215484524|ref|YP_002326759.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AB307-0294]
 gi|239501300|ref|ZP_04660610.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB900]
 gi|260555645|ref|ZP_05827865.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301345631|ref|ZP_07226372.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB056]
 gi|301512782|ref|ZP_07238019.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB058]
 gi|301596293|ref|ZP_07241301.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB059]
 gi|332852153|ref|ZP_08433980.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013150]
 gi|332867552|ref|ZP_08437705.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013113]
 gi|332872598|ref|ZP_08440566.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6014059]
 gi|169149990|emb|CAM87884.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AYE]
 gi|183208618|gb|ACC56016.1| Ribonucleotide reductase, alpha subunit [Acinetobacter baumannii
           ACICU]
 gi|193076531|gb|ABO11187.2| ribonucleoside diphosphate reductase alpha subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055691|gb|ACJ40593.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           baumannii AB0057]
 gi|213986949|gb|ACJ57248.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii AB307-0294]
 gi|260410556|gb|EEX03854.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|322506923|gb|ADX02377.1| nrdA [Acinetobacter baumannii 1656-2]
 gi|323516790|gb|ADX91171.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332729525|gb|EGJ60864.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013150]
 gi|332733969|gb|EGJ65114.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6013113]
 gi|332739127|gb|EGJ69986.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           baumannii 6014059]
          Length = 944

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/962 (55%), Positives = 688/962 (71%), Gaps = 43/962 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P +I   QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LT
Sbjct: 2   SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R   + + 
Sbjct: 59  EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARKDTNSNH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L++   +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ES
Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKES 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L ++L    L  +      A +           
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NAL 225

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++GV+  LL   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 226 EAFLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S
Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
            EAV  ADESME IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E 
Sbjct: 645 DEAVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P 
Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSD-TECEV 952
           T+    G LNAV                        + +  T +  +P +C+ D  +CE 
Sbjct: 885 TIN--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEA 942

Query: 953 CQ 954
           CQ
Sbjct: 943 CQ 944


>gi|260551038|ref|ZP_05825243.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
 gi|260405986|gb|EEW99473.1| ribonucleotide reductase [Acinetobacter sp. RUH2624]
          Length = 944

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/962 (55%), Positives = 686/962 (71%), Gaps = 43/962 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P +I   QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LT
Sbjct: 2   SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R   + + 
Sbjct: 59  EMVLNTFKRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQQTNSNH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L++   +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ES
Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALKATVNRAAEGLEGIEVEAIIDETVKNLYNGVKES 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L ++L    L  +      A +           
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NAL 225

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++GV+  LL   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 226 EAFLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVRGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S
Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
            EAV  ADESME IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E 
Sbjct: 645 DEAVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P 
Sbjct: 765 LSGEFTVINPYLVRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSD-TECEV 952
           T+    G LNAV                        + +  T +  +P +C+ D  +CE 
Sbjct: 885 TIN--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEA 942

Query: 953 CQ 954
           CQ
Sbjct: 943 CQ 944


>gi|126664353|ref|ZP_01735337.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
 gi|126630679|gb|EBA01293.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
          Length = 929

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/929 (55%), Positives = 665/929 (71%), Gaps = 29/929 (3%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG + +F PSKI  A+ KAF+AVEG  A+ S R+ D +  +T+Q V  + +  K
Sbjct: 27  LQVIKRNGNLVNFTPSKIGVAVTKAFLAVEGDQAAGSARINDAVHRVTDQVVQAISRRLK 86

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   VHIEDIQDQVE +LM++   K+ R YVLYREE +  RA            P L + 
Sbjct: 87  AGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERA----LHEPVEAHPTLTVK 142

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G  +  +   ++  V+ A  GL  + ++ ++ E+ +N+Y+G+ E+++ +ALI ++R 
Sbjct: 143 QAGGRTVPLDLGLMKQQVDNAAFGLDGIDAESLVEESIRNLYNGIDEAEVLSALIMTARG 202

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EP+Y+ VTAR LLE+    +        +  T   +  +YP+    +I  G++  L
Sbjct: 203 RIEREPDYSAVTARLLLEQ----LRLESVTALKLDTSLSLADVYPQALSTFINAGIRYEL 258

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           L E+M  FD+  L   LK ERD  F +LGLQ LYDRYFLH    R+E+PQ FFMRVAMGL
Sbjct: 259 LDEAMAAFDMERLGAALKPERDLQFGFLGLQTLYDRYFLHWKEDRLELPQVFFMRVAMGL 318

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L+E +   RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL  I+G+++
Sbjct: 319 SLREDDPNSRAIEFYDLLSSFDYMSSTPTLFNSGTRHSQLSSCYLTTVDDDLEAIYGSIR 378

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR +GA I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 379 DNAMLSKWAGGLGNDWTPVRAMGARIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAV 438

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ Q+  WTLFSP++  
Sbjct: 439 CAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRQDRDWTLFSPNDAP 498

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDLYG  F   Y++YE  A  G+I++F+ I A  LWRKMLT+LFETGHPWITFKDPCN
Sbjct: 499 DLHDLYGNAFRERYQHYEALAAEGKIELFKTIPAKQLWRKMLTVLFETGHPWITFKDPCN 558

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH  N + D  +L  T+ TA
Sbjct: 559 LRSPQQHKGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHINNGELDVKRLERTVDTA 618

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVIDIN + + +A+ SN  HR +GLGLMGFQ AL+ L + Y SP+AVE AD +ME
Sbjct: 619 VRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYALRLSYTSPQAVEFADVAME 678

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPW 746
            +S+ AI AS  LA ERGAY S++GSLW Q + PIDSI  L   R   +L++N  SRL W
Sbjct: 679 QLSYFAIRASARLAAERGAYESYEGSLWSQKILPIDSIERLKAARLEGDLSVNTDSRLDW 738

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             ++  +   GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN  L
Sbjct: 739 APVRDLIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSL 798

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK   LWD  M++DLKY+DGS+  IERIP +LK  +ATAFEID  WL+E+ASRRQKW
Sbjct: 799 VRDLKAEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDARWLVEAASRRQKW 858

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           +DQ QSLNLY+ +PSGKKLD +Y+ AW  GLKTTYYLRS  AT                 
Sbjct: 859 LDQGQSLNLYMAQPSGKKLDELYQLAWERGLKTTYYLRSLGATGA--------------- 903

Query: 927 PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
              +  ++T +   P  C+ D  +CE CQ
Sbjct: 904 ---NEQAATVAAPQPQVCSIDEPDCEACQ 929


>gi|262369329|ref|ZP_06062657.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           johnsonii SH046]
 gi|262315397|gb|EEY96436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           johnsonii SH046]
          Length = 943

 Score =  920 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/959 (55%), Positives = 690/959 (71%), Gaps = 38/959 (3%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S++   P +I   QVIKR G V SFD  KIS AI KAF+AVEG+ ++ S R+ D I  LT
Sbjct: 2   SVSNSTPGQI---QVIKRTGDVASFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G  K+ R YV+YR++R+D R     + 
Sbjct: 59  EMVLNTFSRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYRDQRADARKQAGENH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L+I   +G L   + ++LE  V +A  GL+ ++ + ++ ET KN+Y+G+  S
Sbjct: 119 -----HPTLQITDANGQLQPLDMRKLEATVTKAAEGLEGINVQAIIDETIKNLYNGVKAS 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L ++L    LT +      A    ++       
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVATGLTFLGLSEDTAEGDALET------ 227

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++G++  LL   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H +G R E+
Sbjct: 228 --FLKKGIELDLLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGL+L E  +E+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLSLNEANREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 DDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           A WTLF+P E  DLHDL G EF   Y +YE  A    + + +KI A  LWRKML+MLFET
Sbjct: 466 AEWTLFTPSETPDLHDLMGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLVQHVQGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S
Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMQLAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
             AV+ ADESME IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E 
Sbjct: 645 DAAVDFADESMEVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P 
Sbjct: 765 LSGEFTVINPYLVRALKDRGLWDSVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVEPR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKG------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           T+                    V  ++    V +      +  +P +C+ D  +CE CQ
Sbjct: 885 TINTGALNAVKPATVTAAPVAAVAQEVKPEVVAEDEGFGQAAPVPMACSIDNPDCEACQ 943


>gi|256377254|ref|YP_003100914.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema
           mirum DSM 43827]
 gi|255921557|gb|ACU37068.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema
           mirum DSM 43827]
          Length = 950

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 570/958 (59%), Positives = 706/958 (73%), Gaps = 26/958 (2%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            P+   P       V+V++R+G V++FD +K+S A+ KAF+AVEG GA  S R+  +++ 
Sbjct: 1   MPTTTTPAAVAKAPVRVVRRDGAVSAFDATKVSVAMTKAFLAVEGDGAVASSRLHPLVEE 60

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT Q    LL+H +  + +H+E IQDQVE  LM+ GHH + R YVLYREER+ VR     
Sbjct: 61  LTGQVEAALLKHVRPDVALHVEQIQDQVELVLMRGGHHAVARAYVLYREERAKVR----- 115

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           + + +  AP +++   DG +   +  R+  +V EAC+GL DVS+  VL+ET +N+YDG++
Sbjct: 116 AATASAPAPTIRVTHPDGQVTPLDWDRVAAVVAEACAGLTDVSADTVLAETRRNLYDGIT 175

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +L TA I ++RTL+E EP+Y+  +AR LL+KLRRE L+ V  +P +AT  +M   Y +
Sbjct: 176 VDELATAQIMAARTLVETEPDYSFASARLLLDKLRREALSHVAGEPVEATGEQMS--YVD 233

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           YF  Y+E GV    L   +  FDL  LA  ++ ERD AF++LG+Q LYDRYFLH +G R 
Sbjct: 234 YFPAYVELGVSVDRLDPELRTFDLPRLAAAIRPERDLAFDFLGMQTLYDRYFLHDDGVRY 293

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQAFFMRVAMGLAL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT  PQLSSCFLT
Sbjct: 294 ELPQAFFMRVAMGLALREDDREARAIEFYGLLSSFDFMCSTPTLFNSGTTRPQLSSCFLT 353

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV DDL  IF   + NA+LAKYSGGLGNDWTPVRG+GAHI GTNG+SQGV+PFLK+ANDT
Sbjct: 354 TVDDDLDAIFRGYRNNALLAKYSGGLGNDWTPVRGMGAHIKGTNGQSQGVVPFLKIANDT 413

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AVAVNQGGKRKGA CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV 
Sbjct: 414 AVAVNQGGKRKGAACAYLETWHVDVEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVE 473

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +A WTLFSPDE  DLH+LYG  F   Y  YE  ADRGEI+V R++ AV LWR+MLT+LF
Sbjct: 474 ADAEWTLFSPDETPDLHELYGTAFAQRYRAYEEAADRGEIRVHRRVRAVDLWRRMLTVLF 533

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL  H    
Sbjct: 534 ETGHPWITFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLANHVTPT 593

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D D+LA T RTAVR+LDNVIDIN +TI +A++SN  HR +GLGLMGF  +L +  IPY
Sbjct: 594 GLDRDRLARTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFADSLFVQRIPY 653

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           AS EAVE AD SME ISFHA+ AS +LA ERG+Y SF+GSLW +GV PIDSI LLA+ R 
Sbjct: 654 ASSEAVEFADLSMELISFHALDASADLAAERGSYESFEGSLWSRGVLPIDSIALLADARG 713

Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             L M+ +S L W  ++ + +  GMRNSN MAIAPTATI+NICGV QSI+P Y+NL+VK+
Sbjct: 714 GALDMDTSSTLDWSSVRDKARR-GMRNSNVMAIAPTATISNICGVGQSIEPLYRNLFVKA 772

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           NMSGDFTV+N  LV +LK R LWD AM+SDLKY DG++  ++R+P +LK ++ATAFE+  
Sbjct: 773 NMSGDFTVLNRHLVADLKARGLWDAAMVSDLKYFDGALTAVDRVPAELKALYATAFELSS 832

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            WL+E+ASRRQKWIDQAQSLNLYL  PSG+ LD +YR AW  GLKTTYYLRS SAT VEK
Sbjct: 833 DWLVEAASRRQKWIDQAQSLNLYLAAPSGRALDELYRLAWRKGLKTTYYLRSASATHVEK 892

Query: 914 STLKGVDGKLNAVPVTDPNSSTH-----------------SLGIPSSCTSDTECEVCQ 954
           STL+G DGKL  V +    +                         +   +D +CE CQ
Sbjct: 893 STLRGTDGKLTGVTLPPAAAPAARPAASSPSPAPVPELVLPAEGAACSITDPDCEACQ 950


>gi|262373380|ref|ZP_06066659.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           junii SH205]
 gi|262313405|gb|EEY94490.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           junii SH205]
          Length = 944

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/951 (55%), Positives = 682/951 (71%), Gaps = 40/951 (4%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +  
Sbjct: 10  QLQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRISQLTEMVMNTFKRRL 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R     +       P L+I
Sbjct: 70  PSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQQTGANH-----HPTLQI 124

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
              +G L   +   L   +E A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++R
Sbjct: 125 TDHNGQLQPLDLDALTATIETASEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATR 184

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T IE+EPNY  VTAR L  +L    L  +      + +  ++         ++++G++  
Sbjct: 185 TRIEQEPNYTYVTARLLCNELVGTGLEFLGLSTDTSENDALEP--------FLKKGIELD 236

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +++FDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MG
Sbjct: 237 LLSPDLLNFDLAKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMG 296

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA+
Sbjct: 297 LALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAM 356

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E 
Sbjct: 417 VCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G EF   Y +YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD C
Sbjct: 477 PDLHDLTGAEFAERYTHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVC 535

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D +KLA TI+T
Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKT 595

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESM
Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESM 655

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ L+A+ R E    ++RT RL 
Sbjct: 656 EVISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLD 715

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +
Sbjct: 716 WDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++  W++++ASRRQK
Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVETRWIVDAASRRQK 835

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNA
Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893

Query: 926 VPVTDPNSS---------------------THSLGIPSSCTSD-TECEVCQ 954
           V      +                      T +  +P +C+ D  +CE CQ
Sbjct: 894 VKPASVEAPVVAAQAVEEKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944


>gi|294649453|ref|ZP_06726878.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824658|gb|EFF83436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 944

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/951 (55%), Positives = 680/951 (71%), Gaps = 40/951 (4%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +  
Sbjct: 10  QLQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRL 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R     +       P L+I
Sbjct: 70  PSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQQTGANH-----HPTLQI 124

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
               G L   +   L   +E A +GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++R
Sbjct: 125 TDAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATR 184

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T IE+EPNY  VTAR L  +L    L  +              L  +    ++++G++  
Sbjct: 185 TRIEQEPNYTYVTARLLCNELVSTGLEFLGLPTD--------TLEGDALETFLKKGIELD 236

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MG
Sbjct: 237 LLSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMG 296

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA+
Sbjct: 297 LALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAM 356

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E 
Sbjct: 417 VCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G EF   Y +YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD C
Sbjct: 477 PDLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVC 535

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+T
Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKT 595

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESM
Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESM 655

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E IS++AI  S +LA ERGAYS+F+GSLWDQG+ PIDS+ ++A+ R E    ++RT RL 
Sbjct: 656 EVISYYAIQTSSDLALERGAYSTFEGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLD 715

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +
Sbjct: 716 WDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQK
Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQK 835

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNA
Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893

Query: 926 VPVTDPNSS---------------------THSLGIPSSCTSD-TECEVCQ 954
           V      +                      T +  +P +C+ D  +CE CQ
Sbjct: 894 VKPASVEAPVVAAQAVEDKKPEAQVEEEGFTTAAPVPMACSIDNPDCEACQ 944


>gi|226953557|ref|ZP_03824021.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ATCC 27244]
 gi|226835694|gb|EEH68077.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ATCC 27244]
          Length = 944

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 533/951 (56%), Positives = 680/951 (71%), Gaps = 40/951 (4%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QVIKR G + +F+  KIS AI KAF+AVEG+  + S R+ D I  LTE  +    +  
Sbjct: 10  QLQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRL 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R     +       P L+I
Sbjct: 70  PSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQQTGANH-----HPTLQI 124

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
               G L   +   L   +E A +GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++R
Sbjct: 125 TDAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATR 184

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T IE+EPNY  VTAR L  +L    L  +              L  +    ++++G++  
Sbjct: 185 TRIEQEPNYTYVTARLLCNELVSTGLEFLGLPTD--------TLEGDALETFLKKGIELD 236

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MG
Sbjct: 237 LLSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMG 296

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LAL E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA+
Sbjct: 297 LALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAM 356

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E 
Sbjct: 417 VCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G EF   Y +YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD C
Sbjct: 477 PDLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVC 535

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D +KLA TI+T
Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKT 595

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S  AV+ ADESM
Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESM 655

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL 
Sbjct: 656 EVISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLD 715

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +
Sbjct: 716 WDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  W++++ASRRQK
Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQK 835

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNA
Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893

Query: 926 VPVTDPNSS---------------------THSLGIPSSCTSD-TECEVCQ 954
           V      +                      T +  +P +C+ D  +CE CQ
Sbjct: 894 VKPASVEAPVVAAQAVEDKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944


>gi|255318311|ref|ZP_05359546.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
           radioresistens SK82]
 gi|262379055|ref|ZP_06072211.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           radioresistens SH164]
 gi|255304623|gb|EET83805.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter
           radioresistens SK82]
 gi|262298512|gb|EEY86425.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           radioresistens SH164]
          Length = 942

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 527/958 (55%), Positives = 680/958 (70%), Gaps = 37/958 (3%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S     P +   +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S RV D I  LT
Sbjct: 2   SAITSTPGQ---LQVIKRTGEVAAFDAEKISVAIGKAFLAVEGQQSADSSRVHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R       
Sbjct: 59  EMVMNTFKRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRNQARQQTGAHH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L+I    G L   +  +L+  +E+A  GL+ +  + ++ ET KN+Y+G+  S
Sbjct: 119 -----HPTLQITDSKGQLQPLDMSKLQTTLEKASEGLEGIDVQAIIDETVKNLYNGVKAS 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L ++L    L  +                 E  
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVATGLAFLGLSEDTPES--------EAL 225

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++G++  LL   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 226 EAFLKKGIELELLDAELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGLA++E ++E RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLAVQEDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 SDDLYNIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G  F   Y  YE  A    + + +KI A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGSAFAERYAYYESVAKEQNM-LHKKIRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H    + 
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ L + Y S
Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
             AVE ADESME IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R + 
Sbjct: 645 DAAVEFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDR 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL W+ L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWNTLRTKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIPD+LK I ATAFE++P 
Sbjct: 765 LSGEFTVINPYLVRALKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKG-----------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           T+                      +     V + +    +  +P +C+ D  +CE CQ
Sbjct: 885 TINTGALNAVKATAAAPVAAAPVVETKPETVAEEDGFAQAAPVPMACSIDNPDCEACQ 942


>gi|262376781|ref|ZP_06070009.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           lwoffii SH145]
 gi|262308491|gb|EEY89626.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter
           lwoffii SH145]
          Length = 945

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 527/950 (55%), Positives = 676/950 (71%), Gaps = 37/950 (3%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QVIKR G V +FD  KIS AI KAF+AVEG+ ++ S R+ D I+ LTE  +    +  
Sbjct: 10  QLQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRIEQLTEMVLNTFKRRL 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+RS+ R             P L+I
Sbjct: 70  PSGGTIHIEEIQDQVELALMRTGEQKVARSYVIYREQRSEARKQLGAHH-----HPTLQI 124

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
              +G L   +   L   V +A  GL+ +  + ++ ET KN+Y+G+ ESD+ T ++ ++R
Sbjct: 125 TDAEGKLKPLDLSALTAHVTKAAEGLEGIDVQAIVDETVKNLYNGVKESDISTTMMMATR 184

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T IE+EPNY  VTAR L + L    L  +           ++         Y+++G++  
Sbjct: 185 TRIEQEPNYTYVTARLLRDDLVATGLKFLGLPVDTVEGDALET--------YLKKGIELE 236

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +++FDL  LA  ++ ER   F YLGLQ L+DRYF+H +G R E+PQ FFMRV+MG
Sbjct: 237 LLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSMG 296

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           L+L E  +E RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA+
Sbjct: 297 LSLNEENREDRAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGAM 356

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E 
Sbjct: 417 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G EF   Y +YE  A    + + +KI A  LWRKML+MLFETGHPWITFKD C
Sbjct: 477 PDLHDLTGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVC 535

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGSINL+ H      D +KLA T++T
Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSINLVQHVQGGVLDREKLARTVKT 595

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN + + +A+ SN  HR +G+G+MGFQ AL+ +++ Y S  AVE ADESM
Sbjct: 596 AVRMLDNVIDINYYAVPQARNSNLKHRPVGMGIMGFQDALYEMNVAYGSDAAVEFADESM 655

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E    ++RT RL 
Sbjct: 656 EVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRLD 715

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +
Sbjct: 716 WDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++  W++++ASRRQK
Sbjct: 776 LVRALKERGLWDAVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVETRWIVDAASRRQK 835

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG------- 918
           WIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+         
Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVK 895

Query: 919 -------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
                        V          +      +  +P +C+ D  +CE CQ
Sbjct: 896 PATVAAPVVAAAPVVEAQKPEAPAEEEGFAQAAPVPMACSIDNPDCEACQ 945


>gi|226940722|ref|YP_002795796.1| NrdA [Laribacter hongkongensis HLHK9]
 gi|226715649|gb|ACO74787.1| NrdA [Laribacter hongkongensis HLHK9]
          Length = 917

 Score =  915 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 538/925 (58%), Positives = 673/925 (72%), Gaps = 21/925 (2%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           I+R G V  F+  KI+ A+ KAF+AV+G+ A +S R++D +  LT+  V  L        
Sbjct: 12  IRRTGDVVPFNADKIALAMRKAFIAVQGESAGQSSRLRDEVARLTQDVVNALTGRRPEGS 71

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            + IEDIQDQVE +LM+SG H++ R YVLYRE R+       H+       P L +   D
Sbjct: 72  AIAIEDIQDQVELALMRSGEHEVARAYVLYREARAAE-RRARHAALGIDQLPALHVTRPD 130

Query: 152 GTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           G+    + +RL   +E AC GL+ D     +L++T KN+YDG++E+++E ALI S+R  I
Sbjct: 131 GSRAPLDIERLGRQLEAACHGLEADTRPAALLADTLKNLYDGVTEAEVERALILSARQWI 190

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E++P Y KVTAR LL+ +RREV               +   Y E F + I+ G++A LL 
Sbjct: 191 ERDPAYDKVTARLLLDTIRREVAGG------------VAATYAEVFQQGIQRGMQADLLD 238

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
             + DFDL  LA  L  ERD  F YLGLQ LYDRYFLH++G RIEMPQ FFMRVAMGLAL
Sbjct: 239 PRLADFDLPRLAAALDGERDRQFGYLGLQTLYDRYFLHVDGRRIEMPQTFFMRVAMGLAL 298

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            E +   +A+EFY+LLS F FM STPTLFN+GTRH QLSSC+LTT+ D L GIF A++EN
Sbjct: 299 NEADPTTQAMEFYDLLSRFDFMSSTPTLFNAGTRHSQLSSCYLTTIADSLDGIFDAIKEN 358

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAVCA
Sbjct: 359 AQLSKFAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 418

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +NA WTLFSP +V DL
Sbjct: 419 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMQRVMENAEWTLFSPADVPDL 478

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           HDL G+ F   Y  YE  A    ++  + + AV LWRKMLTMLFETGHPW+T+KD CN+R
Sbjct: 479 HDLTGRAFARRYAEYEAMARADTLRNAKTLRAVDLWRKMLTMLFETGHPWLTWKDACNLR 538

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQQHVG VHSSNLCTEITLN+S +E AVCNLGS+NL  H      D +KLA T+R A+R
Sbjct: 539 SPQQHVGRVHSSNLCTEITLNTSDDEIAVCNLGSVNLANHLKEGALDQEKLARTVRVAMR 598

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + +EKA+ +N  HR +GLG+MGFQ  LHLL +PY S  AV  ADESME I
Sbjct: 599 MLDNVIDLNFYPVEKARTANLRHRPVGLGVMGFQDCLHLLRLPYGSQAAVGFADESMELI 658

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDEL 749
           ++HA  AS ELA+ RG Y SF+GSLW QG+ P DS+ LLA  R   L ++R+SRL W  +
Sbjct: 659 AYHAYLASTELAEMRGCYPSFEGSLWSQGILPQDSVELLAAERQGYLEVDRSSRLDWTPV 718

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++R+   GMRNSNC+AIAPTATIANI GVS SI+P+Y+NL+VKSN+SG+FTVVN FLV +
Sbjct: 719 RERIARFGMRNSNCLAIAPTATIANIIGVSASIEPTYKNLFVKSNLSGEFTVVNEFLVQD 778

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK+  LWD  M++DLKY DG +  IERIP D+K ++ATAF++DP WL+E+ASRRQKWIDQ
Sbjct: 779 LKRLGLWDAVMLADLKYFDGDLAPIERIPQDIKTLYATAFDVDPGWLVEAASRRQKWIDQ 838

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           AQSLNLY+   SGKKLD +Y+ AW+ GLKTTYYLR+ +ATS EKST +G  G+LNAVP+ 
Sbjct: 839 AQSLNLYMAGASGKKLDTLYKLAWVRGLKTTYYLRTLAATSAEKSTGRG--GELNAVPIE 896

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
               +            + +CE CQ
Sbjct: 897 GGMVAEP----KFCSIDNPDCEACQ 917


>gi|325001022|ref|ZP_08122134.1| ribonucleoside-diphosphate reductase alpha chain [Pseudonocardia
           sp. P1]
          Length = 927

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/936 (58%), Positives = 678/936 (72%), Gaps = 18/936 (1%)

Query: 7   VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66
                  A P+   P       ++VI+R+G  TSFD SKIS A+ KAF+AVEG   + S 
Sbjct: 2   TASTAPPASPNGIAPAA-----LRVIRRDGSETSFDASKISVAMTKAFLAVEGGAGASSS 56

Query: 67  RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126
           R+  +++ LT Q V  L +H     +V +E IQDQVE +LM+  HHK+ R YVLYRE+++
Sbjct: 57  RLHPLVQELTGQVVAALHRH--PTPVVQVEQIQDQVELALMRGEHHKVARSYVLYREQQA 114

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
             RA+   +   +     + +   DGT    +  R+E ++ EA  G+ DV +  VL+E  
Sbjct: 115 QARASGPDAGGASA---TIHVTGPDGTRAPLDRDRVETVLAEALDGIDDVEAAPVLAELD 171

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +YDG++  +L  AL+ ++RTL+E+EP+Y+ V +R L+++LR E ++ +    +     
Sbjct: 172 RTVYDGITADELSQALVMAARTLVEREPDYSLVASRLLMDRLRAEAVSHLSGTRETPDQA 231

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
            M   Y  Y   Y+   +   L+   +  FDL  +   L  ERD    +LGLQ LYDRYF
Sbjct: 232 TMARDYASYTKDYLRHAIAIGLVDAELATFDLDRVTAALHPERDLQIGFLGLQTLYDRYF 291

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           LH +G+R E+PQAFF+RVAMGLA++E ++E RA+EFY LLSSF FM STPTLFNSGT  P
Sbjct: 292 LHEHGTRFELPQAFFLRVAMGLAVREVDREARAIEFYELLSSFDFMASTPTLFNSGTTRP 351

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           QLSSCFLTTV DDL  IFG  + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG SQGV+P
Sbjct: 352 QLSSCFLTTVDDDLDSIFGGYRNNALLAKYSGGLGNDWTPVRGLGAHIRGTNGVSQGVVP 411

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           FLK+A DTAVAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+P
Sbjct: 412 FLKIAGDTAVAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVP 471

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D F++RV  +  WTLFSPDEV DLHDLYG EF   Y  YE  A+RGE++V R + AV LW
Sbjct: 472 DEFLRRVEADTTWTLFSPDEVPDLHDLYGLEFAERYRAYEAAAERGELRVHRTVRAVDLW 531

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVC 600
           R+MLTMLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+         E AVC
Sbjct: 532 RRMLTMLFETGHPWVTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTRAGHDDDRGEVAVC 591

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGS+NL AH   +  D DKL  T+ TAVR+LDNV+DIN +TI +A++SN  HR +GLG+
Sbjct: 592 NLGSVNLAAHVTRDGLDADKLRRTVTTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGM 651

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGF  AL L  I   S  AV  AD S E +S+HAI+AS +LA ERG Y+SF+GSLW +GV
Sbjct: 652 MGFSDALFLQRIAPGSEAAVGFADVSAEVLSYHAIAASSDLAAERGRYASFEGSLWSRGV 711

Query: 721 FPIDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            PIDS+ LLA+ R   EL ++R+S L W  L++ V+T GMRNSN +AIAPTATI+NICGV
Sbjct: 712 LPIDSLDLLADARGEGELEIDRSSTLDWASLRETVRTQGMRNSNVLAIAPTATISNICGV 771

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            QSI+P + NLYVKSNMSGDFTVVN  LV +LK+R LWDE M+SDLKY DGS+  I+R+P
Sbjct: 772 GQSIEPIHLNLYVKSNMSGDFTVVNPHLVRDLKERGLWDEVMVSDLKYFDGSLAEIDRVP 831

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
            DLK+++ATAFEI+P WL+E+ASRRQKW+DQAQSLNLYL  PSG+KLD +YR AW  GLK
Sbjct: 832 GDLKELYATAFEIEPRWLVEAASRRQKWLDQAQSLNLYLAGPSGRKLDELYRLAWRSGLK 891

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           TTYYLR+R+ATSVEKSTLKG DG+L  VP      +
Sbjct: 892 TTYYLRTRAATSVEKSTLKGTDGRLTGVPTGTSGPA 927


>gi|50083945|ref|YP_045455.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. ADP1]
 gi|49529921|emb|CAG67633.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           sp. ADP1]
          Length = 941

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 540/948 (56%), Positives = 689/948 (72%), Gaps = 37/948 (3%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QVIKRNG V +FD  KIS AI KAF+AVEG+ ++ S R+ D I  LTE  +    +  
Sbjct: 10  QLQVIKRNGEVATFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFNRRL 69

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
            S   +HIE+IQDQVE +LM++G HKI R YV+YRE+RS+ R     +       P L+I
Sbjct: 70  PSGGTIHIEEIQDQVELALMRTGEHKIARSYVIYREQRSNARQQSGANH-----HPTLQI 124

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
               G L   +   L+  VE+A  GL+ +  + ++ ET KN+Y+G+  SD+ T ++ ++R
Sbjct: 125 TDAQGQLQPLDLDALKATVEKAAEGLEGIEIQAIVEETVKNLYNGVKVSDIATTMMMATR 184

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           T IE EPNY  VTAR L  +L  + L  +      A +  ++         ++++GV+  
Sbjct: 185 TRIEHEPNYTYVTARLLRNELVAKGLEFLGLSEDTAENDALET--------FLKKGVELE 236

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
           LL   +++FDL  LA  ++ ER   F YLGLQ LYDRYF+H +G R E+PQ FFMRV+MG
Sbjct: 237 LLDPELLNFDLATLAAAIQPERSNQFTYLGLQTLYDRYFIHSDGVRYELPQLFFMRVSMG 296

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           LA+ E  +E+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ DDLY I+GA+
Sbjct: 297 LAINEDNREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYNIYGAI 356

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA
Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
           VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  WTLF+P EV
Sbjct: 417 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWLPDLFMQRVFEDGEWTLFTPSEV 476

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DLHDL G+EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGHPWITFKD C
Sbjct: 477 PDLHDLTGEEFAQRYAYYESIAKEQNL-LHKKVRAQDLWRKMLSMLFETGHPWITFKDVC 535

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H      D DKLA TI+T
Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSINLVQHVQGGVLDRDKLARTIKT 595

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ +++ Y S EAV  ADESM
Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNMAYGSDEAVNFADESM 655

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745
           E IS++AI  S +LA ERG YS+FKGSLWDQG+ PIDS+ ++A+ R E    ++RT RL 
Sbjct: 656 EVISYYAIQTSSDLAIERGVYSTFKGSLWDQGILPIDSLDIVAKSRPERMFEVDRTQRLD 715

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N +
Sbjct: 716 WDTLRNKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W++++ASRRQK
Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQK 835

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+    G LNA
Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893

Query: 926 VP------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           V                   VT  +  T +  +P +C+ D  +CE CQ
Sbjct: 894 VKPTTVAAPVAAVAQETKPEVTAEDGFTTAAPVPMACSIDNPDCEACQ 941


>gi|94986919|ref|YP_594852.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731168|emb|CAJ54530.1| Ribonucleotide reductase large subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 916

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/931 (58%), Positives = 677/931 (72%), Gaps = 24/931 (2%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  +QVI+RNG + SF   KI+ A+ KAF+AV+G+ +  S  ++D++ +LTE  ++ L 
Sbjct: 9   SLAAMQVIRRNGDIVSFKSEKIAAALTKAFIAVKGEQSPLSSSLRDVVTHLTETVISALT 68

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   +HIEDIQDQVE +LMQSG H + R YVLYRE+R+ +R           +   
Sbjct: 69  HRFPDGGSIHIEDIQDQVERALMQSGEHDVARAYVLYREKRAAMRNTSEKKAVLHLVDK- 127

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
                  G     +   L  I   AC  L  VSS  + + T K++YDG+S +D+ ++LI 
Sbjct: 128 -------GEKKVLDHTWLMNICHVACKNLTSVSSISIFNNTLKSLYDGMSLADVYSSLIL 180

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S+RT+IE EP Y KVTAR L   L  EVL    +       H+++     YF ++IE G+
Sbjct: 181 SARTMIEYEPEYNKVTARLLRLSLAYEVLDQSTELMDL---HQLKIATISYFPKFIELGI 237

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
            A LL   +  F+  YLA  L  ERD  F Y+G+Q LYDRYFLHI   RIE+PQ FFMRV
Sbjct: 238 NAGLLDPRLSTFNYSYLAQALVPERDELFGYIGIQTLYDRYFLHIKKRRIELPQLFFMRV 297

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E +KE +A+EFYNLLS+F FM STPTLFNSGT  PQLSSCFLTT+ DDL  IF
Sbjct: 298 AMGLALNEKKKEDKAIEFYNLLSNFDFMSSTPTLFNSGTIRPQLSSCFLTTINDDLENIF 357

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            +++ENA+L KY+GG+GNDWTPVR LG+ I GTNG+SQGVIPF+KVANDTA+AVNQGGKR
Sbjct: 358 QSIKENALLQKYAGGIGNDWTPVRALGSPIKGTNGQSQGVIPFMKVANDTALAVNQGGKR 417

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV +N+ WTLFSP
Sbjct: 418 KGAVCAYLETWHLDIEDFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVLENSDWTLFSP 477

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           ++V +LH+ +G EFE  Y +YE +   GEI +F+K+SAV LWRKMLTMLFETGHPWITFK
Sbjct: 478 NDVPELHEKFGLEFEKFYTHYEAKTLTGEITLFKKVSAVQLWRKMLTMLFETGHPWITFK 537

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           D CN+RSPQQH+GV+HSSNLCTEITLN+S EE AVCNLGSINL +H  N + D +KL+ T
Sbjct: 538 DACNLRSPQQHIGVIHSSNLCTEITLNTSKEEIAVCNLGSINLSSHLINGEVDQNKLSQT 597

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I TA+R+LDNVIDIN +   KA  +N  HR IG+G+MGF   L+ L IPYAS +AVE AD
Sbjct: 598 IATALRMLDNVIDINYYNSPKASYANLQHRPIGIGIMGFADCLYKLGIPYASHQAVEFAD 657

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSR 743
            SME + ++   AS ELA+ERGAYS+F GSLWD+ + P+DS+ LL + R     ++R+SR
Sbjct: 658 RSMEIVCYYTYWASTELAKERGAYSTFPGSLWDRKILPLDSLDLLLKERGGFLEVDRSSR 717

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD LK R+   GMRNSNC+++APTATI+NI GVSQ I+P+YQNLYVKSNMSG+FT+VN
Sbjct: 718 LDWDALKDRIAKYGMRNSNCVSLAPTATISNIIGVSQGIEPAYQNLYVKSNMSGEFTIVN 777

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +LVN+LK+ +LWDEAM++DLKY DGS+  I+R+PD LKK++ATAFEIDP+WLIE+ASRR
Sbjct: 778 EYLVNDLKKLNLWDEAMVADLKYFDGSVAYIDRVPDSLKKLYATAFEIDPVWLIEAASRR 837

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           QKWIDQAQSLNLYLD PSGKK+D IY+ AWL GLKTTYYLRS  A+ VEK          
Sbjct: 838 QKWIDQAQSLNLYLDTPSGKKMDEIYKLAWLRGLKTTYYLRSLGASQVEK---------- 887

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             V     +       + +    D ECE CQ
Sbjct: 888 --VGTNSQSVLKKDTVLRACSIDDPECEACQ 916


>gi|262280151|ref|ZP_06057936.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
 gi|262260502|gb|EEY79235.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202]
          Length = 943

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 532/961 (55%), Positives = 685/961 (71%), Gaps = 42/961 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P +I   QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LT
Sbjct: 2   SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R   + + 
Sbjct: 59  EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQQTNSNH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L++   +G L   +   L+  + +A  GL+ +  + ++ ET KN+Y+G+ E+
Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATIAKAAEGLEGIDVQAIVDETVKNLYNGVKET 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L  +L    L  +        +  ++       
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPENTALE------- 226

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++GV+  LL   ++DFDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 227 -AFLKKGVELDLLSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGL L E  KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLTLNEQNKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA TI+TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ ++I Y S
Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
             A++ ADESME IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E 
Sbjct: 645 DAAIDFADESMEVISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  
Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKGVDGKLNAVPVTDPNSST--------------------HSLGIPSSCTSD-TECEVC 953
           T+    G LNAV      ++                      +  +P +C+ D  +CE C
Sbjct: 885 TIN--TGALNAVKPATVEAAPVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEAC 942

Query: 954 Q 954
           Q
Sbjct: 943 Q 943


>gi|325121076|gb|ADY80599.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 944

 Score =  908 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 533/960 (55%), Positives = 681/960 (70%), Gaps = 39/960 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P +I   QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LT
Sbjct: 2   SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R   + + 
Sbjct: 59  EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQQTNSNH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L++   +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ES
Sbjct: 119 -----HPTLQVTDTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKES 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L  +L    LT +        +           
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPEN--------NAL 225

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++GV+  LL   ++DFDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 226 EAFLKKGVELDLLSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA TI+TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S
Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
             AV+ ADESME IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E 
Sbjct: 645 DAAVDFADESMEVISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  
Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKG-------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           T+                     V          +    T +  +P +C+ D  +CE CQ
Sbjct: 885 TINTGALNAVKPATVEAAAVAAPVVEAKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944


>gi|293609144|ref|ZP_06691447.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829717|gb|EFF88079.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 944

 Score =  908 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 533/960 (55%), Positives = 681/960 (70%), Gaps = 39/960 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P +I   QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LT
Sbjct: 2   SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R   + + 
Sbjct: 59  EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQQTNSNH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L++   +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ES
Sbjct: 119 -----HPTLQVTDTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKES 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L  +L    LT +        +           
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPEN--------NAL 225

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++GV+  LL   ++DFDL  L+  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 226 EAFLKKGVELDLLSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA TI+TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + I Y S
Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
             AV+ ADESME IS++AI  S  LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E 
Sbjct: 645 DAAVDFADESMEVISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  
Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKG-------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
           T+                     V          +    T +  +P +C+ D  +CE CQ
Sbjct: 885 TINTGALNAVKPATVEAAAVAAPVVEVKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944


>gi|299771425|ref|YP_003733451.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. DR1]
 gi|298701513|gb|ADI92078.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           sp. DR1]
          Length = 943

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/961 (55%), Positives = 685/961 (71%), Gaps = 42/961 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S+    P +I   QVIKR G V +FD  KIS AI KAF+AVEG+ +S S R+ D I  LT
Sbjct: 2   SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E  +    +   S   +HIE+IQDQVE +LM++G  K+ R YV+YRE+R+  R   + + 
Sbjct: 59  EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQQTNSNH 118

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P L++   +G L   +   L+  V +A  GL+ +  + ++ ET KN+Y+G+ ES
Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATVAKAAEGLEGIDVQAIVDETVKNLYNGVKES 173

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           D+ T ++ ++RT IE+EPNY  VTAR L  +L    L  +        +           
Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPEN--------NAL 225

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
             ++++GV+  LL   ++DFDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+
Sbjct: 226 EAFLKKGVELDLLSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+
Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV
Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++
Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFET
Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      
Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D +KLA TI+TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ ++I Y S
Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGS 644

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735
             A++ ADESME IS++AI  S  LA ERG+YS+FKGSLWDQG+ PIDS+ ++A+ R E 
Sbjct: 645 DAAIDFADESMEVISYYAIETSSNLAVERGSYSTFKGSLWDQGILPIDSLEIVAKSRPER 704

Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN
Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+FTV+N +LV  LK R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE+D  
Sbjct: 765 LSGEFTVINPYLVRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W++++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKS
Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884

Query: 915 TLKGVDGKLNAVP--------------------VTDPNSSTHSLGIPSSCTSD-TECEVC 953
           T+    G LNAV                       + +  T +  +P +C+ D  +CE C
Sbjct: 885 TIN--TGALNAVKPATVEAAAVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEAC 942

Query: 954 Q 954
           Q
Sbjct: 943 Q 943


>gi|268316002|ref|YP_003289721.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
           marinus DSM 4252]
 gi|262333536|gb|ACY47333.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
           marinus DSM 4252]
          Length = 926

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/933 (55%), Positives = 654/933 (70%), Gaps = 30/933 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR--SIRVQDIIKNLTEQTVTRLLQHNK 88
           V+KR+G   SFD  +I RA+ KAF A     A    S  + + I+ LT   V    +  +
Sbjct: 15  VVKRDGRRVSFDAERIRRALEKAFRATLELPADAPLSAELSEEIEALTGAVV----RWCR 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E+IQD+VE +LM++G + + R Y+LY             ++++A    +L   
Sbjct: 71  DRAEVSVEEIQDEVERTLMRAGRYAVARRYILY-----------REARAEARRRQQLTYR 119

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             DGT   F  + L   +E AC GL DV  ++V  E  + +Y G+ E +L+ ALI ++RT
Sbjct: 120 RADGTEAPFPHEALRARIEAACDGLDDVDPELVREELLRTVYPGIPEDELDRALILAART 179

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE+EP+Y  V AR LL+ L REV        ++A            F  Y+E GV+   
Sbjct: 180 HIEREPDYTYVAARLLLDALYREVFGRPIPPSEQA------EACRAGFRAYLEHGVRLGR 233

Query: 269 LHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
           L E +   FD+  LA  L  ERD  F +LGLQ LYDRY LH   G R E+PQ  +MRVAM
Sbjct: 234 LDERLLRTFDIDRLAAALHPERDRRFTFLGLQTLYDRYLLHEPEGRRFELPQYLWMRVAM 293

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           GLAL E +   RA++FY LLSSF FM STPTLFN+GT HPQLSSC+LTTV DDL  IF A
Sbjct: 294 GLALAEDDPTARAIQFYELLSSFRFMNSTPTLFNAGTPHPQLSSCYLTTVQDDLGAIFKA 353

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +++NA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGVIPFLK+ NDTAVAVNQGGKRKG
Sbjct: 354 IRDNALLSKWAGGLGNDWTPVRALGAHIRGTNGRSQGVIPFLKIVNDTAVAVNQGGKRKG 413

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           AVCAYLE WH+D+EEFL+LR+NTGD+RRRTHDMNTA WIPDLFM+RV +   WTLFSPDE
Sbjct: 414 AVCAYLEVWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFSPDE 473

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V DLHDLYG+ F   YE+YER+A+ G I+ +R+I AVALWRKML+MLFETGHPW+TFKDP
Sbjct: 474 VPDLHDLYGRAFRERYEHYEREAEAGRIRNWRRIEAVALWRKMLSMLFETGHPWLTFKDP 533

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDYDKLASTI 625
           CNIRSPQ HVGVVHSSNLCTEITLN+S EE AVCNLGSINL        + D +KL  TI
Sbjct: 534 CNIRSPQDHVGVVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGELDREKLRDTI 593

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RTAVR+LDNVID+N + I +A+ SN  HR IGLGLMGFQ  L+   + YAS  AVE+ADE
Sbjct: 594 RTAVRMLDNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVELADE 653

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744
            MEFI++ A  AS +LA ERGAY +FKGS WD+G+ P+D++ LL   R   + + RT+RL
Sbjct: 654 FMEFIAYCAYEASSDLAAERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEPVPVPRTARL 713

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD L+++++  GMRNSN +AIAPTATIANICGVS SI+P+Y+NLYVKSN+SG+FT +N 
Sbjct: 714 DWDALREKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFTQLNP 773

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK R LWD+ M+ DLKY+DGS+  I+RIP +LK  + TAFEI+P WLIE A+RRQ
Sbjct: 774 YLVRDLKARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLIECAARRQ 833

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           KWIDQ+QSLNLYL EPSG+KL  +Y+ AW +GLKTTYYLR+ +AT +EKSTL      + 
Sbjct: 834 KWIDQSQSLNLYLAEPSGRKLSEMYQLAWQLGLKTTYYLRALAATQIEKSTLDINRRGIQ 893

Query: 925 AVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954
              +   + S+        P+    D  CE CQ
Sbjct: 894 PRWMKSRSPSSDIVVRRDGPACSPDDESCEACQ 926


>gi|189219088|ref|YP_001939729.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
           ATP-cone domains [Methylacidiphilum infernorum V4]
 gi|189185946|gb|ACD83131.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to
           ATP-cone domains [Methylacidiphilum infernorum V4]
          Length = 942

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/945 (54%), Positives = 658/945 (69%), Gaps = 23/945 (2%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG--ASRSIRVQDIIKNLTEQ 78
            F   +  + ++KR+G V  FDP +I  A+ KAF A  GK    + S   +  I+ +T  
Sbjct: 10  EFDAHLSALSIVKRDGRVVPFDPHRIRAAVEKAFRADRGKNVGEALSSEDRAAIEEITSA 69

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V++          + +E IQD VE +LM+ G+H + + Y+LYR +R   R  ++     
Sbjct: 70  VVSKSAALAGRGERLEVERIQDLVELTLMELGYHTVAKRYILYRADRGRARTIKNREGV- 128

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESD 197
                 + ++   G  +  +   +   + EAC GL++  S + +  ET + +YD + E D
Sbjct: 129 -----SIHMIDKQGRKVPLDLAWIHRTLMEACRGLEESCSWRELAEETVRGLYDEIKEED 183

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  A+I ++R+ +EKEP Y  V AR +L K+  E L+         + HE    +  YF 
Sbjct: 184 VVQAMILTARSWVEKEPAYTYVAARLMLGKIYEEALS------LVPSIHETAEYHKAYFP 237

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            YI+ GVK   L   +++F+L  LA  L+ ERD  F YLGLQILYDRY LH    RIE P
Sbjct: 238 SYIDFGVKIGRLSPRLLEFNLEKLAQALRLERDRQFSYLGLQILYDRYLLHHEERRIETP 297

Query: 318 QAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           Q F+MRVAMGLAL E  ++E  A+ FY+ LS F FM STPTLFNS T HPQLSSC+L TV
Sbjct: 298 QYFWMRVAMGLALNEKEDRELWAIRFYDTLSRFLFMASTPTLFNSATIHPQLSSCYLLTV 357

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDL GIF  + +NA L+K++GGLGNDWT VR  G+ I GTNGKSQGVIPFLKVANDTAV
Sbjct: 358 EDDLDGIFKVISDNARLSKWAGGLGNDWTNVRATGSLIRGTNGKSQGVIPFLKVANDTAV 417

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           AVNQGGKRKGA+CAYLETWH+D+E+FL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV QN
Sbjct: 418 AVNQGGKRKGALCAYLETWHLDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLQN 477

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLFSP +V DLH LYGK+FE  Y  YE+ ADRGEIK+F+++SAV LWRKMLT+LFET
Sbjct: 478 GSWTLFSPSDVPDLHHLYGKDFEKRYVEYEQMADRGEIKLFKRVSAVDLWRKMLTLLFET 537

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQ 615
           GHPWITFKDP NIRSPQ HVGV++SSNLCTEI LN+S EE AVCNLGSINL AH   + +
Sbjct: 538 GHPWITFKDPSNIRSPQDHVGVINSSNLCTEILLNTSPEEVAVCNLGSINLAAHLDESGE 597

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D  KL  TIR AVR+LDNVIDIN + I +A+ +N  HR +GLG+MGFQ  L++  IPY 
Sbjct: 598 IDEKKLQETIRIAVRMLDNVIDINFYPIPEARNANLRHRPVGLGIMGFQDVLYIKKIPYG 657

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-D 734
           S +AVE+AD  ME +S+HAI +S ELA+ERG+YS+FKGS WD+G+ PID+I LL E R  
Sbjct: 658 SEKAVEVADRLMEMVSYHAILSSCELAKERGSYSTFKGSKWDRGLLPIDTIDLLEEQREG 717

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + ++R+    WD ++K++K  G+RNS  +AIAPTATI+NI GV QSI+PSY+NLYVKSN
Sbjct: 718 FVEVDRSQTKDWDYVRKKIKEQGLRNSCLLAIAPTATISNITGVCQSIEPSYKNLYVKSN 777

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SGDF  +N +LV +LK+ +LWD+ MI DLKY+DGS+  IERIP +LK+++ATAFEIDP 
Sbjct: 778 LSGDFISINPYLVADLKKLNLWDQEMIDDLKYYDGSVKPIERIPQELKELYATAFEIDPY 837

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           ++IE ASRRQKWID  QSLNLY+DEPSG K+  +Y   W  GLKTTYYLRSR+AT+VEKS
Sbjct: 838 FIIECASRRQKWIDMGQSLNLYVDEPSGWKISQMYILCWKKGLKTTYYLRSRAATTVEKS 897

Query: 915 TLKGV-----DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           TL           + +   +       +    ++C+ D ECE CQ
Sbjct: 898 TLDVNARGIQPRWMKSKSPSANIRVERNEKEKNACSLDPECESCQ 942


>gi|87311396|ref|ZP_01093516.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
           marina DSM 3645]
 gi|87285808|gb|EAQ77722.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula
           marina DSM 3645]
          Length = 973

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/972 (51%), Positives = 666/972 (68%), Gaps = 29/972 (2%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
            P ++      D   ++  P       ++V KR+G + SFD  +I  AI KAF A  G  
Sbjct: 12  QPVQEEPFEGADVMTTVTSPA----VALEVRKRDGRIISFDVGRIHYAIGKAFRAEIGVA 67

Query: 62  ASRSIR--VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
             + +   ++D +K+++E  + ++     S   V +E IQD VE  LM+ GH  + R Y+
Sbjct: 68  DGQELENSLEDQVKSISEAVIDQIESRPFSRDGVDVESIQDAVEIQLMRHGHFSVARRYI 127

Query: 120 LYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSS 178
           LYREE + +RA ++       I P++ +  +DG    F++ RL   V  A  GL+ + S+
Sbjct: 128 LYREEHAKLRALRAADSDGNLIPPRINVKQEDGAKEPFDATRLRRRVYSAVRGLEQNCSA 187

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
           + ++ ETY+++YDG++  ++  A+I +SR+ IE++P+Y KV AR +L  +  E +  ++ 
Sbjct: 188 EELVEETYRSLYDGITPQEIYRAMILASRSRIERDPDYDKVAARLMLMVIYNEAIGRLHP 247

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
           K       ++  +    F  YI  G++A  L E + DFDL  ++  L+ ERD AF YLGL
Sbjct: 248 K------EDIAEVTRREFSTYISTGIEAGRLAERLRDFDLEKISAALRPERDAAFPYLGL 301

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           Q +YDRY LHI+G RIE PQ F+MRVAMGLA  E  KE+RA+EFYN+LS+F F  +TPTL
Sbjct: 302 QTIYDRYLLHIDGRRIETPQYFWMRVAMGLAWNEENKEERAIEFYNILSTFRFTSATPTL 361

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           FNSGT HPQLSSC+L+TV DDL  IF  + +NAML+K++GGLGNDWT +R   AHI GTN
Sbjct: 362 FNSGTLHPQLSSCYLSTVDDDLEHIFKVVSDNAMLSKWAGGLGNDWTNIRATNAHIKGTN 421

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G+SQGVIPFLKV NDTA+AVNQGGKRKGAVC+YLE+WH+DVEEFLDLRKNTGDDRRRTHD
Sbjct: 422 GQSQGVIPFLKVVNDTAIAVNQGGKRKGAVCSYLESWHLDVEEFLDLRKNTGDDRRRTHD 481

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           M+TANWIPDLFMKRV +NA WTLFSPDE  DLHDL G +F+  YE YE+ AD G++++FR
Sbjct: 482 MHTANWIPDLFMKRVRENADWTLFSPDETPDLHDLCGSKFQARYEEYEKLADEGKMRLFR 541

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ A  LWRKMLT LFETGHPWIT+KDP N+RSPQ HVGVVHSSNLCTEI LN+S +E A
Sbjct: 542 RLPANELWRKMLTRLFETGHPWITWKDPSNVRSPQDHVGVVHSSNLCTEILLNTSKDEIA 601

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGSINL+AH  N + D +KL  T+ TA R+LDNVIDIN +   +AK SN  HR +G+
Sbjct: 602 VCNLGSINLVAHIRNGELDLEKLQETVTTAARMLDNVIDINYYPTGEAKTSNARHRPVGM 661

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           GLMGFQ AL  L + YAS EAVE AD SME IS+ AI AS +LA ERG Y ++ GS WD+
Sbjct: 662 GLMGFQDALSSLGVSYASQEAVEFADRSMEAISYFAILASSQLAAERGTYETYAGSKWDR 721

Query: 719 GVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           G+ PIDS+ +L + R   + ++R+S L W  ++  V+  GMRNSN MAIAPTATI+ I G
Sbjct: 722 GILPIDSLDILEQERGLPIEVDRSSTLDWQVVRDSVREHGMRNSNVMAIAPTATISTIVG 781

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           VSQSI+P+Y+NL+VKSN+SG+F  +N  +V +LK   LWD  M+  +KY+DG +  I+R+
Sbjct: 782 VSQSIEPTYKNLFVKSNLSGEFPQLNIRMVQDLKAEGLWDSDMVEAIKYYDGELTEIDRV 841

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PD LK  + TAFE+D  WLIE  +RRQKWID  QSLNLY+ +PSG+KL  +Y  AW +GL
Sbjct: 842 PDHLKLRYLTAFEVDSKWLIECGARRQKWIDMGQSLNLYMAQPSGRKLHDMYMLAWNVGL 901

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---------------SLGIPS 942
           KTTYYLR+ SAT VEKST+      +    + + ++S                     P 
Sbjct: 902 KTTYYLRTLSATQVEKSTIDVNRFGIQPRWMKNASASADIRVDRGDAAEILDELPPEQPK 961

Query: 943 SCTSDTECEVCQ 954
           +C  D +CE CQ
Sbjct: 962 ACNLDGDCESCQ 973


>gi|241589541|ref|YP_002979566.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
 gi|240868253|gb|ACS65912.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia
           pickettii 12D]
          Length = 949

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/954 (54%), Positives = 661/954 (69%), Gaps = 39/954 (4%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMA------VEGKGASRSIRVQDIIKNLTEQTVT 81
              VI+RNG    FD SKI+ A+ KAF+             S S   ++ ++ LT+    
Sbjct: 8   AYMVIRRNGETVPFDASKIASALAKAFLYDAHGNLYRPGVVSLSAAQRERVEQLTQAVCD 67

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
            L +  +S+   HIE +QDQVE +LM++G H++ R YVLYRE  S  RA    +     I
Sbjct: 68  ALGRRGESSA-FHIEALQDQVELALMRAGEHEVARGYVLYREMASQKRAPAPVAGRYDHI 126

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
                  M +G +  F+      IVE   +GL+ VS+  +  E  +N+Y+   E ++E A
Sbjct: 127 K---SYRMRNGGVAPFDPSFWIAIVESVVAGLESVSAADLFEEAVRNLYNNAKEEEIENA 183

Query: 202 LIFSSRTLIEKEPNYAKVTARF-LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++RT IE EP Y K  AR  L  +L  +V        +  T  E+   Y E F R I
Sbjct: 184 LILAARTKIEMEPAYTKAAARLVLALQLGHDVFG------KAITFDELASSYGEAFARGI 237

Query: 261 EEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E V A LL + M   FDL  LAN ++ ERD  ++YLG+Q LYDRY LHI+G RIE+PQA
Sbjct: 238 KEAVSAELLADDMTRGFDLQRLANAIRPERDCLWDYLGMQTLYDRYLLHIDGKRIELPQA 297

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F MRVAMGLA  E E+E RA+EFY +LS+F +M STPTLFN+G+   QLSSC+LTT+ DD
Sbjct: 298 FLMRVAMGLARNEVEREVRAIEFYEVLSTFDYMASTPTLFNTGSLRSQLSSCYLTTISDD 357

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+  L+ENA+L+K++GGLGNDWT VR LG++I GTNGKSQG++PFLKV NDTAVAVN
Sbjct: 358 LEGIYDGLKENALLSKFAGGLGNDWTRVRALGSYIKGTNGKSQGIVPFLKVVNDTAVAVN 417

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A W
Sbjct: 418 QGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHEGADW 477

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSP++V DLHDLYG +FE  Y++YE  AD G +K F++  AV LWRKML +LFETGHP
Sbjct: 478 TLFSPNDVPDLHDLYGSKFEERYKHYEALADAGTLKHFKRAPAVDLWRKMLGLLFETGHP 537

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--- 616
           WITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++  E AVCNLGS+NL+AH         
Sbjct: 538 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSV 597

Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D+ KL  TIR A+R+LDNVID+N + + KA+ SN  HR +GLG+MG+Q AL++L IP+
Sbjct: 598 ALDHVKLRRTIRIAMRMLDNVIDMNFYAVSKARTSNMRHRPVGLGMMGYQDALYVLGIPF 657

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR- 733
            S  AVE +D SME I ++A  AS +LA ERG Y S+ GSLW +G+ P DSI LL + R 
Sbjct: 658 GSEAAVEFSDRSMEAICYYAYEASSDLAVERGVYPSYNGSLWSKGILPFDSIDLLVQERG 717

Query: 734 -DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
              L ++R+S + WD L++++   GMRNSNC+AIAPTATI+NI GVS S +P +QNLYVK
Sbjct: 718 EGYLDVDRSSSMDWDALREKIGRQGMRNSNCVAIAPTATISNIVGVSASNEPQFQNLYVK 777

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           SN+SG+FT+VN +LV +LK+  +WDE M+SDLK++DGS+  I+R+P D+K  +ATAFEI+
Sbjct: 778 SNLSGEFTLVNEYLVADLKKLGIWDEVMLSDLKFYDGSVQKIDRVPADIKARYATAFEIE 837

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           P W +E+ +RRQKWIDQAQSLN+Y+   SGKKLD +Y+ AWL GLKTTYYLR+ +ATSVE
Sbjct: 838 PSWSVEAGARRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTIAATSVE 897

Query: 913 KSTLKGVDGKLNAVPVTDP------NSSTHSLGIPSSCTSDT------ECEVCQ 954
           KST+    G LNAV  +          S+        C           C+ CQ
Sbjct: 898 KSTV--PLGTLNAVAPSSQMATQQTTQSSEPDVEGRVCMFRPGDPDFEGCQACQ 949


>gi|149173740|ref|ZP_01852369.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
           maris DSM 8797]
 gi|148847270|gb|EDL61604.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces
           maris DSM 8797]
          Length = 949

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/945 (53%), Positives = 644/945 (68%), Gaps = 26/945 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V KR G    FD S I RAI  AF A             ++  I  + E     +     
Sbjct: 10  VTKRGGRTAPFDASLIGRAISNAFRAELNLADNQPLDDEIRMEIPEMVESVANEIASAAS 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ------SHSKSDAPIA 142
           +   V +E IQD VE  LM+ GH++I R Y++YR ER+ +RA +        S+S     
Sbjct: 70  TDAGVEVEKIQDVVEMMLMRRGHYRIARRYIVYRAERAKLRALRGSSDLVEESESIKSTT 129

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETA 201
           P+  +++ DGT + F+  R+   + +AC GL+ D S++ +L E  ++++DG+S  +L  A
Sbjct: 130 PRFHVVLTDGTKVPFDEARILARLSDACRGLEGDCSAEALLEEVMRSIFDGISVEELYRA 189

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I ++RT IE++P Y  V +R +L+ +  + L         +  +E+  LY + F +++E
Sbjct: 190 MILAARTRIERDPAYDTVASRLMLKIIYNDALGN-----APSDVNELNQLYVDRFPKFLE 244

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +G+ A+ L   +  FDL  +A  L+ +RD  F+YLGLQ ++DRY LHI G RIE PQ F+
Sbjct: 245 DGIAAKRLTPDLHKFDLNRIALALEPKRDHLFQYLGLQAIFDRYLLHIGGRRIETPQYFW 304

Query: 322 MRVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           MRV+MGLA++E      RA+EFYN+LSSF F  +TPTLFNS T HPQLSSC+L+TV DDL
Sbjct: 305 MRVSMGLAIQEEGDATGRAIEFYNILSSFRFTSATPTLFNSATLHPQLSSCYLSTVNDDL 364

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF  + +NA L+K++GGLGNDWT +R   +HI GTNG+SQGVIPFLKV NDTAVAVNQ
Sbjct: 365 DHIFKCVADNAKLSKWAGGLGNDWTQIRATNSHISGTNGQSQGVIPFLKVVNDTAVAVNQ 424

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGAVC+YLETWH+DVEEFLDLRKNTGDDRRRTHDM+TANWIPDLFM+RV ++A WT
Sbjct: 425 GGKRKGAVCSYLETWHMDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMRRVREDAEWT 484

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP++V DLHDLYG +FE  Y  YER  + GEIK+FR+ISAV LWRKMLT LFETGHPW
Sbjct: 485 LFSPNDVPDLHDLYGHDFEKRYAEYERMTETGEIKLFRRISAVELWRKMLTRLFETGHPW 544

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           IT+KD  N+RSPQ HVGVVHSSNLCTEI LN+S +ETAVCNLGS+NL  H  + Q D   
Sbjct: 545 ITWKDASNLRSPQDHVGVVHSSNLCTEILLNTSRDETAVCNLGSVNLKLHIVDGQLDLGM 604

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  T+RTA+R+LDNVIDIN +   +A+ SN  HR +GLG+MGFQ AL    I YAS +AV
Sbjct: 605 LEETVRTAMRMLDNVIDINYYPTPEARNSNTKHRPVGLGIMGFQDALLAQGISYASMQAV 664

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739
           E AD SME IS+ AI AS ELA ERG Y S+ GS WD+G+ PID++ L  + R   + ++
Sbjct: 665 EFADASMEAISYFAILASSELAGERGRYGSYTGSKWDRGLLPIDTLDLYEKERGIPVEVD 724

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
           R +RL W  ++  +   GMRNSN MAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+F
Sbjct: 725 RQARLDWQVVRNSIAANGMRNSNVMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEF 784

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           T VN  LV++LK  DLWD  M+  LKY+DGS+  IERIPD+LK  + TAFE++P W IE 
Sbjct: 785 TQVNRQLVDDLKAVDLWDADMLESLKYYDGSVQEIERIPDELKARYLTAFEVEPKWTIEC 844

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+ RQKWID  QSLNLYL EPSGKKL  +Y  AW  GLKTTYYLR+ +AT VEKST+   
Sbjct: 845 AAHRQKWIDMGQSLNLYLAEPSGKKLHEMYMLAWERGLKTTYYLRTLAATQVEKSTVDVN 904

Query: 920 D----------GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                         +     D   +   +    SC  D +CE CQ
Sbjct: 905 KFGIQPRWMKNASASGDIQVDREPAATMVTPGESCNLDGDCEACQ 949


>gi|282890381|ref|ZP_06298909.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499763|gb|EFB42054.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 921

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/927 (54%), Positives = 652/927 (70%), Gaps = 19/927 (2%)

Query: 40  SFDPSKISRAIMKAFMA--VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED 97
           SFD  +I  AI KAF A  + G   +    +Q +   +T   ++ +L        V IE 
Sbjct: 2   SFDGERIRLAITKAFRAELLLGADQALPEEIQKVTNGITSAVISSIL-SLTRDEPVPIEK 60

Query: 98  IQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLIS 156
           IQD VE  LMQ G+H++ R Y+LYREER   RA  ++   ++  +   L +   DGT   
Sbjct: 61  IQDLVEKELMQEGYHQVARGYILYREERKRARAFKETAIPANEQVKSTLYVTYPDGTKSP 120

Query: 157 FNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
            N+++++  +E AC+  +++ + + ++ E  K++YDG+   +L  + IFS+R+ IEKEP 
Sbjct: 121 LNTQKMQSKMEHACADFKELCNPQELIEEMLKHLYDGVLFKELNESAIFSARSKIEKEPA 180

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y  V AR LL+ +  EV         +    E+  L+  +F +YI +GV A+ L   +  
Sbjct: 181 YNYVAARLLLQDIYNEVFEQ------ECHPSEVANLHVSHFEQYIRKGVMAKRLTPELFG 234

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET-E 334
           +DL  LA +L   RD  F Y+G+Q LYDRY +H+   RIE PQ F+MRVAMGLAL E   
Sbjct: 235 YDLEKLAQNLDSSRDKLFTYIGVQTLYDRYLIHVKNDRIETPQYFWMRVAMGLALNEKEN 294

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           +E+RA+EFYN+LS FHF+ STPTLFNSG+ HPQLSSC+L+TV DDL  IF  + +NA L+
Sbjct: 295 REERAIEFYNVLSQFHFISSTPTLFNSGSLHPQLSSCYLSTVQDDLVNIFKVIADNASLS 354

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K+SGG+GNDWT +R  GA IHGTNG +QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLET
Sbjct: 355 KWSGGIGNDWTNIRATGATIHGTNGLTQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLET 414

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D+E+F++LRKNTGD+RRRTHDMNTANWIPDLFMKRV + + WTLF+P +  DLHDLY
Sbjct: 415 WHLDIEDFVELRKNTGDERRRTHDMNTANWIPDLFMKRVREQSVWTLFNPSDTPDLHDLY 474

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EFE  Y  YER A  G+IK+F+ I A+ LWRKM+TMLFETGHPW+TFKDP NIRSPQ 
Sbjct: 475 GIEFEKRYCEYERLAQEGKIKLFKVIPAMDLWRKMITMLFETGHPWMTFKDPSNIRSPQS 534

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           H GVVHSSNLCTEI LN+S  ETAVCNLGSINL AH   +  D   LA TIRTA+R+LDN
Sbjct: 535 HAGVVHSSNLCTEILLNTSENETAVCNLGSINLAAHIKGDFLDEQFLAKTIRTAMRMLDN 594

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VIDIN +  ++A++SN  HR +GLGLMGFQ AL+   I Y S EAVE AD SME IS+HA
Sbjct: 595 VIDINYYPTKEARESNLRHRPVGLGLMGFQDALYHFRIAYDSQEAVEFADASMEMISYHA 654

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRV 753
           I AS ELA+ERG YSS++GS W QG+ PIDSI LL   R   L M+RTS+  W  ++K +
Sbjct: 655 ILASTELAKERGVYSSYRGSKWSQGILPIDSIALLDNERKGYLHMDRTSKKDWSVVRKEI 714

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           +  GMRN N MAIAPTATIA+I G+SQSI+P++  LYVKSN+SG+F V+N +LV +LK+R
Sbjct: 715 QKHGMRNCNTMAIAPTATIAHISGLSQSIEPTFSLLYVKSNLSGEFAVLNEWLVKDLKER 774

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           DLW++ M+ +LKY+DGS+  IE+ P+DLK ++ TAFEI+P WLIE ASRRQKWID  QSL
Sbjct: 775 DLWNQDMLDELKYYDGSVQEIEQFPEDLKGLYKTAFEIEPKWLIECASRRQKWIDMGQSL 834

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           NLY++ P G+KL  +Y  AW  GLKTTYYLRS++AT VEKSTL      +    +   ++
Sbjct: 835 NLYVNAPDGRKLSDMYLLAWEKGLKTTYYLRSKAATQVEKSTLDINKKGIQPRWMKSRSA 894

Query: 934 S-----THSLGIPSSCTS-DTECEVCQ 954
           S          IP SC+    ECE CQ
Sbjct: 895 SGSIRVERDSSIPKSCSLSGDECESCQ 921


>gi|297621806|ref|YP_003709943.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297377107|gb|ADI38937.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 918

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/933 (50%), Positives = 636/933 (68%), Gaps = 27/933 (2%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTEQTVTRLL 84
           + + V KR+  +T F+P +I  AI  AF  V    +  ++     +    + E  + ++ 
Sbjct: 8   QKISVRKRDKQITPFNPERIKNAISSAFRDVWNLQSYHTLDKAQQVIIGQVFEAVIEKIR 67

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   + +E IQD VE  LM+  H+K+ + Y+LYRE R+  R  +         AP 
Sbjct: 68  CEKPFDTPIDVERIQDYVELILMRQEHYKVAKSYILYRENRAKARQQKEEE------APA 121

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203
           +++ + +G  ++++ ++L++ ++ +C   + + SS+ ++      ++D +S   +  A I
Sbjct: 122 IRVKLINGDSVAYSQEKLKLSLKRSCQDFEPLCSSEELMKAIEPQLFDRISSEQIRQAAI 181

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++++LIEKEP Y KV A  LL+K+ RE+ +  +                  F  YI++G
Sbjct: 182 LAAKSLIEKEPAYDKVAANILLQKIYREIESLPFSN----------------FSSYIQKG 225

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           V+A+ LH  ++ FD   L   +++ERD  F Y GLQ LYDRY + I+    E+PQ F+MR
Sbjct: 226 VEAKRLHSDLLGFDHRLLEEAMEHERDRQFSYQGLQTLYDRYLIRISEQVAELPQFFWMR 285

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           V+MGLAL ET+K  +AVEFY++LSSF ++ STPTLFNSGT HPQLSSC+L+TV DDL  I
Sbjct: 286 VSMGLALNETDKNSKAVEFYHVLSSFDYISSTPTLFNSGTCHPQLSSCYLSTVQDDLNDI 345

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  + ++A L+K++GG+GNDWT VR   AHI+GTNGKSQGVIPFLKV NDTAVAVNQGGK
Sbjct: 346 FRVISDDAKLSKWAGGIGNDWTNVRATQAHINGTNGKSQGVIPFLKVVNDTAVAVNQGGK 405

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGA+C YLETWH+D+ EFLDLRKNTGDDRRRTHDM+TANWIPDLFMKRV ++  WTLFS
Sbjct: 406 RKGAICCYLETWHLDLPEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVEEDGEWTLFS 465

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           PDEV DLHDLYG+ F+  YE+YER+A  G+IK +R   A+ LWRKML+ LFETGHPWIT+
Sbjct: 466 PDEVPDLHDLYGRAFDKRYEHYEREAKAGKIKQYRTFKAIDLWRKMLSRLFETGHPWITW 525

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
           KDP NIR  Q+H GV+HSSNLCTEI L +S EETAVCNLGS+NL  H    + D   L  
Sbjct: 526 KDPSNIRGNQKHAGVIHSSNLCTEILLPTSKEETAVCNLGSVNLRNHIKEGKLDVSHLEK 585

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           TI TA+R+LDNVIDIN +   +A++SN  HR IGLG+MGFQ AL+L+ IPY S EA+  A
Sbjct: 586 TIATAIRMLDNVIDINFYPTPEARESNLRHRPIGLGMMGFQDALYLMEIPYCSQEAIAFA 645

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTS 742
           D SME IS+ AI AS  LA+ERG+Y SFKGS WD G+FP  ++ LL E R  ++ +++ S
Sbjct: 646 DSSMETISYFAIKASSLLAKERGSYPSFKGSNWDLGLFPHQTMALLEEERGIKIPIDQCS 705

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L + ++  GMRNS+ +AIAPTATI+ I GVSQSI+P Y NL+ KSN+SG+FT V
Sbjct: 706 SRDWKTLLEIIRQNGMRNSHVLAIAPTATISQIVGVSQSIEPQYTNLFTKSNLSGEFTSV 765

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV  LK  +LWD+ M+ +LKYHDGS+  I RIP ++++   TAFE+   WLI  A+ 
Sbjct: 766 NHYLVETLKSLNLWDQEMLDELKYHDGSVQAIPRIPQEVRERFRTAFEVGAEWLIRCAAA 825

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWID  QSLNLYL EPSG+KLD +YR AW +GLKTTYYLR+R+AT VEKSTL      
Sbjct: 826 RQKWIDMGQSLNLYLTEPSGRKLDEMYRLAWKLGLKTTYYLRTRAATQVEKSTLDINKFD 885

Query: 923 LNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954
           +    + + ++S+        C+  D  CE CQ
Sbjct: 886 IQPKWMKNKSASSSIAPRQGQCSIDDPTCEACQ 918


>gi|325110862|ref|YP_004271930.1| ribonucleoside-diphosphate reductase, subunit alpha [Planctomyces
           brasiliensis DSM 5305]
 gi|324971130|gb|ADY61908.1| ribonucleoside-diphosphate reductase, alpha subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 953

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/950 (52%), Positives = 660/950 (69%), Gaps = 32/950 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ--DIIKNLTEQTVTRLLQHNK 88
           V KR+G + SFD ++I RA+  AF A      S+ +      +I+ ++++   ++     
Sbjct: 10  VRKRDGRIASFDMNRIGRAMENAFRAELNLADSQPLDEDVISVIRQISDEVGNQIAPSAS 69

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS--KSDAPIAPKLK 146
           S   V +E++QD VE  LM+ GH+++ R Y++YR E + +RA +       + P   +  
Sbjct: 70  SRQGVDVEELQDAVEMLLMKHGHYRVARRYIVYRAEHAKLRALRGEEGFADEGPERVQTN 129

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +DDGTL+ F+  R+   ++ AC GL+D+ S++ +  E  K++YDG++  ++  A+I +
Sbjct: 130 VTLDDGTLVPFDPNRIMTKLQLACRGLEDICSAEDLHEEVLKSIYDGITTKEIYRAMILA 189

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           SR+ IE++P Y KV  R +L+ +  + L +        +  ++  +Y   F  YI +G+ 
Sbjct: 190 SRSRIERDPAYDKVAGRLMLDVIYHDALGS------APSPKKLASVYRHQFEHYIIDGIA 243

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           A  L   + DF+L  +A+ L+  RD  F+YLGLQ +YDRY +HI+G RIE PQ F+MRVA
Sbjct: 244 AERLSPGLRDFNLTQIADALEPSRDALFQYLGLQTIYDRYLIHIDGRRIEAPQFFWMRVA 303

Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           MGLA+ E  +KE+RA++FYN+LSSF F  +TPTLFNS T HPQLSSC+L+TV DDL  IF
Sbjct: 304 MGLAVNEGEQKEERAIQFYNMLSSFRFTSATPTLFNSATLHPQLSSCYLSTVSDDLEHIF 363

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             + +NA L+K++GGLGNDWT +R   AHIHGTNG+SQGVIPFLKV NDTAVAVNQGGKR
Sbjct: 364 KVISDNAKLSKWAGGLGNDWTNIRATNAHIHGTNGQSQGVIPFLKVVNDTAVAVNQGGKR 423

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+TANWIPDLFMKRV  N  WTLFSP
Sbjct: 424 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMHTANWIPDLFMKRVEANDEWTLFSP 483

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DEV DLHDL GKEFE  Y  YE+ A+ GE+ + RK++AV LWRKMLT LFETGHPWIT+K
Sbjct: 484 DEVPDLHDLTGKEFENRYLEYEKMAEDGEMGLTRKVNAVELWRKMLTRLFETGHPWITWK 543

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DP N+RSPQ H GVVHSSNLCTEI LN+S  ETAVCNLGSINL  H  +   +   L  T
Sbjct: 544 DPSNVRSPQDHCGVVHSSNLCTEILLNTSPTETAVCNLGSINLKTHIVDGALNLQMLEET 603

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           + TA+R+LDNVIDIN +  E+A  +N  HR +G+GLMGFQ AL  + + Y  PEAVE AD
Sbjct: 604 VFTAMRMLDNVIDINYYPTEEAANANKRHRPVGMGLMGFQDALLAMDLSYTCPEAVEFAD 663

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSR 743
            SME IS+ AI AS +LA ERG YSS++GS WD+G+ PID++ LL E R   + ++R+S 
Sbjct: 664 RSMEAISYFAILASSQLAAERGRYSSYEGSKWDRGLLPIDTLDLLEEARGQAIEVDRSSS 723

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD ++K V   GMRNSNCMAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+FT VN
Sbjct: 724 LDWDVVRKSVAENGMRNSNCMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEFTQVN 783

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
           S LV ELK R LWD  M+  LKY+DG++ +I+R+P D+K+ + TAFE+DP WL+E A+RR
Sbjct: 784 SVLVTELKSRGLWDSDMLDALKYYDGTLADIDRVPADIKERYQTAFEVDPYWLVECAARR 843

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD--- 920
           QKW+D  QSLNLY+  P+GK+L  +Y  AW  GLKTTYYLR+ +AT VEKST+       
Sbjct: 844 QKWLDMGQSLNLYMQAPNGKRLHDMYFDAWKKGLKTTYYLRTLAATQVEKSTVDVNKFGI 903

Query: 921 ----------------GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                            + +   + + N    S+   +   ++ +CE CQ
Sbjct: 904 QPRWMKNKSNSSDIRVDRAHRDVIEETNDLPASMANATCDPNNPDCEACQ 953


>gi|237805180|ref|YP_002889334.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis B/TZ1A828/OT]
 gi|231273480|emb|CAX10396.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis B/TZ1A828/OT]
          Length = 1047

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/938 (51%), Positives = 627/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AIEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  L++ + +E L             +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLIDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT++ FN  ++   +E+A             ++  + M       ++          
Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E  P   +   R  +EK++ +++             +   LY E   R  +   +   
Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227

Query: 269 LHESMMDFDLVYLAN 283
             +++ +  +  L+ 
Sbjct: 228 TEKTIAEEAIEVLSK 242


>gi|296436382|gb|ADH18556.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/9768]
 gi|296438241|gb|ADH20402.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/11074]
 gi|297140742|gb|ADH97500.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/9301]
          Length = 1047

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L             +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGVWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT++ FN  ++   +E+A             ++  + M       ++          
Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E  P   +   R  +EK++ +++             +   LY E   R  +   +   
Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227

Query: 269 LHESMMDFDLVYLAN 283
             +++ +  +  L+ 
Sbjct: 228 TEKTIAEEAVEVLSK 242


>gi|15605562|ref|NP_220348.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis D/UW-3/CX]
 gi|237803259|ref|YP_002888453.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis B/Jali20/OT]
 gi|255311667|ref|ZP_05354237.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 6276]
 gi|255317968|ref|ZP_05359214.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 6276s]
 gi|7388066|sp|O84834|RIR1_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|6578115|gb|AAC68424.2| Ribonucleoside Reductase, Large Chain [Chlamydia trachomatis
            D/UW-3/CX]
 gi|231274493|emb|CAX11289.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis B/Jali20/OT]
 gi|296437313|gb|ADH19483.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis G/11222]
          Length = 1047

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L             +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT++ FN  ++   +E+A             ++  + M       ++          
Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E  P   +   R  +EK++ +++             +   LY E   R  +   +   
Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227

Query: 269 LHESMMDFDLVYLAN 283
             +++ +  +  L+ 
Sbjct: 228 TEKTIAEEAVEVLSK 242


>gi|297748956|gb|ADI51502.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis D-EC]
 gi|297749836|gb|ADI52514.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis D-LC]
          Length = 1053

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 122  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 181

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 182  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 241

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 242  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 301

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L             +++  + ++F RYI E
Sbjct: 302  IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 355

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 356  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 415

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 416  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 475

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 476  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 535

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 536  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 595

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 596  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 655

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 656  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 715

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 716  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 775

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 776  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 835

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 836  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 895

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 896  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 955

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 956  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1015

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1016 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1053



 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 17  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 76

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 77  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 127

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT++ FN  ++   +E+A             ++  + M       ++          
Sbjct: 128 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 177

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E  P   +   R  +EK++ +++             +   LY E   R  +   +   
Sbjct: 178 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 233

Query: 269 LHESMMDFDLVYLAN 283
             +++ +  +  L+ 
Sbjct: 234 TEKTIAEEAVEVLSK 248


>gi|76789572|ref|YP_328658.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis A/HAR-13]
 gi|76168102|gb|AAX51110.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis A/HAR-13]
          Length = 1047

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/938 (51%), Positives = 627/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  L++ + +E L             +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLIDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT++ FN  ++   +E+A             ++  + M       ++          
Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E  P   +   R  +EK++ +++             +   LY E   R  +   +   
Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227

Query: 269 LHESMMDFDLVYLAN 283
             +++ +  +  L+ 
Sbjct: 228 TEKTIAEEAVEVLSK 242


>gi|255507449|ref|ZP_05383088.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis D(s)2923]
 gi|289525873|emb|CBJ15355.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis Sweden2]
 gi|296435458|gb|ADH17636.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis E/150]
 gi|296439175|gb|ADH21328.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis E/11023]
          Length = 1047

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 626/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L             +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H    R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT VR  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT++ FN  ++   +E+A             ++  + M       ++          
Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E  P   +   R  +EK++ +++             +   LY E   R  +   +   
Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227

Query: 269 LHESMMDFDLVYLAN 283
             +++ +  +  L+ 
Sbjct: 228 TEKTIAEEAVEVLSK 242


>gi|255349231|ref|ZP_05381238.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 70]
 gi|255503768|ref|ZP_05382158.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 70s]
          Length = 1047

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/938 (51%), Positives = 626/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ + + Y+LYRE R+ VR  +    S        
Sbjct: 176  CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
             ++++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L             +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H    R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV D+L  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT VR  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EA+E 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAIEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT++ FN  ++   +E+A             ++  + M       ++          
Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E  P   +   R  +EK++ +++             +   LY E   R  +   +   
Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227

Query: 269 LHESMMDFDLVYLAN 283
             +++ +  +  L+ 
Sbjct: 228 TEKTIAEEAVEVLSK 242


>gi|126640805|ref|YP_001083789.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii ATCC 17978]
          Length = 885

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/900 (56%), Positives = 649/900 (72%), Gaps = 40/900 (4%)

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            +    +   S   +HIE+IQDQVE +LM++G HK+ R YV+YR++R+  R   + +   
Sbjct: 2   VLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARKDTNSNH-- 59

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
               P L++   +G L   +   L+  V  A  GL+ +  + ++ ET KN+Y+G+ ESD+
Sbjct: 60  ---HPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDI 116

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            T ++ ++RT IE+EPNY  VTAR L ++L    L  +      A +             
Sbjct: 117 ATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NALEA 168

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           ++++GV+  LL   ++ FDL  LA  ++ ER   F YLGLQ L+DRYF+H NG R E+PQ
Sbjct: 169 FLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQ 228

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT  PQLSSC+LTT+ D
Sbjct: 229 LFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGD 288

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAV
Sbjct: 289 DLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAV 348

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++  
Sbjct: 349 NQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGE 408

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           WTLF+P E  DLHDL G EF   Y  YE  A    + + +K+ A  LWRKML+MLFETGH
Sbjct: 409 WTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGH 467

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           PWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H      D 
Sbjct: 468 PWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDR 527

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KLA T++TAVR+LDNVIDIN + + +AK SN  HR +G+G+MGFQ AL+ + + Y S E
Sbjct: 528 EKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDE 587

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736
           AV  ADESME IS++AI  S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E   
Sbjct: 588 AVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMF 647

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            ++RT RL WD L+ +V+  GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+S
Sbjct: 648 EVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLS 707

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+FTV+N +LV  LK+R LWD  M++DLK+ +GS+  I RIP++LK I ATAFE++P W+
Sbjct: 708 GEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWI 767

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +++ASRRQKWIDQAQSLNLY+   +GKKLD  Y+ AWL GLKTTYYLR+  ATS EKST+
Sbjct: 768 VDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTI 827

Query: 917 KGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954
               G LNAV                        + +  T +  +P +C+ D  +CE CQ
Sbjct: 828 N--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 885


>gi|166154171|ref|YP_001654289.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis 434/Bu]
 gi|166155046|ref|YP_001653301.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis L2b/UCH-1/proctitis]
 gi|301335415|ref|ZP_07223659.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            trachomatis L2tet1]
 gi|165930159|emb|CAP03643.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis 434/Bu]
 gi|165931034|emb|CAP06597.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia
            trachomatis L2b/UCH-1/proctitis]
          Length = 1047

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + V++R G V  F+P KIS A+ KAF A +         V++ I  LT+  V  + + 
Sbjct: 116  QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175

Query: 87   NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143
                   + IE IQD VE  LM  GH+ I + Y+LYRE R+ VR  +    S        
Sbjct: 176  CSQQDRRIDIEKIQDIVEQQLMVVGHYAIAKNYILYREARARVRDNREEDGSTEKTIAEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
              +++  DG+  +    +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  AFEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L             +++  + ++F RYI E
Sbjct: 296  IMAARANIEKEPDYALVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LA+ +   RD  F Y+G+Q LYDRYF H  G R+E PQ F+M
Sbjct: 350  GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLAL E +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 410  RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNG+SQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+NTA+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNTASWIPDLFFKRLQQKGTWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++F+K+ A  LWRKML+M+FETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMVFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGSINL+ H   +  D +KL+
Sbjct: 650  FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R E  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +SR  W+ ++  VK  GMR+   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IERIPD LK I  TAFEI+P W+IE A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CE CQ
Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047



 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 11/141 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               ++  I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+Y++YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121

Query: 149 MDDGTLISFNSKRLEMIVEEA 169
              GT++ FN  ++   +E+A
Sbjct: 122 RRCGTVVHFNPMKISAALEKA 142


>gi|15834834|ref|NP_296593.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Nigg]
 gi|270285000|ref|ZP_06194394.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Nigg]
 gi|270289023|ref|ZP_06195325.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum Weiss]
 gi|301336398|ref|ZP_07224600.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia
            muridarum MopnTet14]
 gi|14195148|sp|Q9PL93|RIR1_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|7190252|gb|AAF39086.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia
            muridarum Nigg]
          Length = 1047

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/938 (52%), Positives = 631/938 (67%), Gaps = 16/938 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + + VI+R G    F+P KIS A+ KAF A +         V++ +  LT++ V  + + 
Sbjct: 116  QSLSVIRRCGTTVHFNPMKISAALEKAFRATDRIEGMTPDFVREEVNALTQKIVAEIEER 175

Query: 87   NKSALI-VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ--SHSKSDAPIAP 143
                   + IE IQD VE  LM  GH+   + Y+LYRE R+ VR  +       +AP   
Sbjct: 176  CSQQDSRIDIEQIQDIVEQQLMVVGHYATAKNYILYREARARVRDNRVEDQIVEEAPSEE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
              +++  DG+       +L   +  ACS   +   + ++    + N Y G+ ES++  A 
Sbjct: 236  TFEVLSKDGSTYMITHSQLLARLARACSRFPETTDAALLTDMAFSNFYSGIKESEVVLAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  LL+ + +E L             +++ +Y ++F RYI E
Sbjct: 296  IMAARANIEKEPDYAFVAAELLLDVVYKEALDRSRGD------EDLEQVYRDHFKRYIME 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G   RL  E    FDL  LAN +   RD  F Y+G+Q LYDRYF H +G R+E PQ F+M
Sbjct: 350  GDSYRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWM 409

Query: 323  RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            RVAMGLALKE +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  
Sbjct: 410  RVAMGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469

Query: 383  IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
            I+  + +NAML+K++GG+GNDWT +R  GA I GTNGKSQGVIPF+KV NDTAVAVNQGG
Sbjct: 470  IYKVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG 529

Query: 443  KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            KRKGAVC YLE WH+D E+FL+LRKNTGDDRRR HD+NTA+WIPDLF KR+ Q   WTLF
Sbjct: 530  KRKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLF 589

Query: 503  SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            SPD+V  LHD YG+EFE  YE YER+ D GEI++++K+ A  LWRKML+MLFETGHPW+T
Sbjct: 590  SPDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMT 649

Query: 563  FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            FKDP NIRS Q H GVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  ++  D +KL+
Sbjct: 650  FKDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGLDEEKLS 709

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             TI  AVR+LDNVIDIN +  ++AK++N  HRAIGLG+MGFQ AL+ L I YAS EAVE 
Sbjct: 710  ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740
            AD S E IS++AI AS  LA+ERG YSS+KGS WD+G+ PID+I LLA  R +  L M+ 
Sbjct: 770  ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMDT 829

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            + R  W+ ++  ++  GMRN   MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT
Sbjct: 830  SVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + N +L+ +LK+  +WD  M+ DLKY DGS+  IER+PD +K I  TAFEI+P W++E A
Sbjct: 890  IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECA 949

Query: 861  SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917
            SRRQKWID  QSLNLYL +P GKKL  +Y  AW  GLKTTYYLRS SAT+VEKS +    
Sbjct: 950  SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009

Query: 918  -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G+  +                     C+ +  CEVCQ
Sbjct: 1010 RGIQPRWMKNKSASAGIVVERASKTPVCSLEEGCEVCQ 1047



 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 105/255 (41%), Gaps = 25/255 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++KRNG    FD ++I +A+  AF               +++ I+++T Q V  ++Q   
Sbjct: 11  IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLENSIRSITHQVVKEVVQKIT 70

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E IQD VE  L  +G   + R+YV+YR++R   R               L ++
Sbjct: 71  DGQVVTVERIQDMVESQLYINGLQDVARDYVVYRDDRKAHREKSWQ---------SLSVI 121

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              GT + FN  ++   +E+A             ++  + M       ++          
Sbjct: 122 RRCGTTVHFNPMKISAALEKAFR----------ATDRIEGMTPDFVREEVNALTQKIVAE 171

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           + E+    ++  +R  +E+++  V   +      AT  +   LY E   R  +  V+ ++
Sbjct: 172 IEERC---SQQDSRIDIEQIQDIVEQQLMVVGHYAT-AKNYILYREARARVRDNRVEDQI 227

Query: 269 LHESMMDFDLVYLAN 283
           + E+  +     L+ 
Sbjct: 228 VEEAPSEETFEVLSK 242


>gi|29840534|ref|NP_829640.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            caviae GPIC]
 gi|29834883|gb|AAP05518.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            caviae GPIC]
          Length = 1044

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/932 (50%), Positives = 623/932 (66%), Gaps = 15/932 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            V +R+G    F+P KIS A+ KAF A +    +        I +LT + V  +L      
Sbjct: 120  VRRRDGNAVKFNPMKISAALEKAFRATQKNTDTPFQETLAEINDLTNKIVEEILVVCSQE 179

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
              V IE IQD VE  LM  GH+ + + Y+LYRE RS +R ++ +  +   I     ++ +
Sbjct: 180  KTVDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRESKENVATQESIEEVYDVVRE 239

Query: 151  DGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG+    N  +L      AC    +  + + + S  + N Y G+ E+++  A I ++R  
Sbjct: 240  DGSTYQINKAQLTDKFIWACQRFPETTNPQTLASMAFANFYSGIKEAEIVKACIMAARAN 299

Query: 210  IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            IEKEP+YA V A  L + + +E +       + AT  ++     + F  YI  G +   L
Sbjct: 300  IEKEPDYAYVAAELLTDVVYQETMG------KSATDSDLAEAQKQCFKNYILNG-EEYRL 352

Query: 270  HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            +  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MR++MGLA
Sbjct: 353  NPRLKEYDLDALAEALDISRDRQFSYMGVQNLYDRYFNQHEGRRLETAQIFWMRISMGLA 412

Query: 330  LKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
            L E  +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  + 
Sbjct: 413  LNEGEDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVIS 472

Query: 389  ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
            +NAML+K++GG+GNDWT VR +G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKGA+
Sbjct: 473  DNAMLSKWAGGIGNDWTGVRAIGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAM 532

Query: 449  CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSPD+V 
Sbjct: 533  CVYLEIWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLDQKGTWTLFSPDDVP 592

Query: 509  DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
             LH+ YG EF+  YE YER+ D GEIK+++KI A  LWRKML+ML+ETGHPW+TFKDP N
Sbjct: 593  GLHEAYGFEFDKLYEEYERKIDNGEIKLYKKIPAEDLWRKMLSMLYETGHPWLTFKDPSN 652

Query: 569  IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            IR  Q H GVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KLA TI  A
Sbjct: 653  IRGAQDHAGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLAETISIA 712

Query: 629  VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            +R+LDN+ID+N +   +A  +N +HRA+GLG MGFQ AL+ L+I YAS EAVE AD+S E
Sbjct: 713  IRILDNIIDLNFYPTPEAANANLSHRAVGLGQMGFQDALYKLNISYASQEAVEFADKSAE 772

Query: 689  FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746
             I+++AI +S  LA+ERG YSS+KGS WD+G  P+D++ LL E R E  + M+ + R  W
Sbjct: 773  LIAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTVELLKEYRGEENVLMDTSCRKDW 832

Query: 747  DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
              +++ +K  GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N +L
Sbjct: 833  TPVREAIKAYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYL 892

Query: 807  VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            + +LK+  +WD  M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASRRQKW
Sbjct: 893  IEQLKKLGIWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKW 952

Query: 867  IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GVDGK 922
            ID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS       G+  +
Sbjct: 953  IDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFTDVNKRGIQPR 1012

Query: 923  LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     +           C+ +  CE CQ
Sbjct: 1013 WMKNKSASTSIVVERTKSTPVCSLEEGCESCQ 1044



 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +IS+A+  AF         +     +++ I ++T + V  
Sbjct: 5   KEKNYTIVKRNGMFVPFNQDRISQALEAAFRDTRSLENNSPLPEDLENSISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  +G   + R+Y++YR++  + R    H        
Sbjct: 65  VMQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIVYRDQHKEQREGSWHCVL----- 119

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169
               +   DG  + FN  ++   +E+A
Sbjct: 120 ----VRRRDGNAVKFNPMKISAALEKA 142


>gi|329943119|ref|ZP_08291893.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci Cal10]
 gi|332287702|ref|YP_004422603.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            psittaci 6BC]
 gi|313848276|emb|CBY17277.1| putative ribonucleotide reductase large subunit [Chlamydophila
            psittaci RD1]
 gi|325507258|gb|ADZ18896.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            psittaci 6BC]
 gi|328814666|gb|EGF84656.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci Cal10]
 gi|328914954|gb|AEB55787.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            psittaci 6BC]
          Length = 1045

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/935 (51%), Positives = 627/935 (67%), Gaps = 16/935 (1%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            V VI+R+G    F+P KIS A+ KAF A +         +   I  LT + V  +L    
Sbjct: 118  VSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEINGLTNKIVEEILGVCS 177

Query: 89   SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS-KSDAPIAPKLKI 147
                + IE IQD VE  LM  GH+ + + Y+LYRE RS +R  +        P+     +
Sbjct: 178  PEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDPVEEVYDV 237

Query: 148  MMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSS 206
            +  DGT  S N  +L      AC    +     ++    + N Y G+ ES++  A I ++
Sbjct: 238  VKSDGTTYSINKSQLIDKFIWACQRFPETTDPHVLADMAFANFYSGIKESEIALACIMAA 297

Query: 207  RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            R  IEKEP+YA V A  L++ + +E +       + AT  ++     + F  YI  G + 
Sbjct: 298  RANIEKEPDYAYVAAELLMDVVYQETMG------KTATDSDLAEAQKQCFKNYILNG-ET 350

Query: 267  RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              L+  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+M
Sbjct: 351  YRLNPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSM 410

Query: 327  GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            GLAL E  +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+ 
Sbjct: 411  GLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYK 470

Query: 386  ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             + +NAML+K++GG+GNDWT VR  G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRK
Sbjct: 471  VISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRK 530

Query: 446  GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
            GA   YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSPD
Sbjct: 531  GATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPD 590

Query: 506  EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            +V  LH+ YG EF+  YE YE + D GEIK+++KI A  LWRKML+ML+ETGHPW+TFKD
Sbjct: 591  DVPGLHEAYGIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKD 650

Query: 566  PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            P NIR+ Q HVGVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KL  TI
Sbjct: 651  PSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLGETI 710

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
              A+R+LDNVID+N +  ++A  +N +HRA+GLG+MGFQ AL+ L+I YASPEAVE AD+
Sbjct: 711  SIAIRILDNVIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEFADK 770

Query: 686  SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743
            S E ++++AI +S  LA+ERG YSS+KGS WD+G  P+D+I LL E R E  + M+ + R
Sbjct: 771  SSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDTSCR 830

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
              W+ +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N
Sbjct: 831  KDWNPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPN 890

Query: 804  SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +L+N+LK+  +WD+ M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASRR
Sbjct: 891  VYLINKLKELGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRR 950

Query: 864  QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GV 919
            QKW+D  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS +     G+
Sbjct: 951  QKWVDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGI 1010

Query: 920  DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +         +           C+ +  CE CQ
Sbjct: 1011 QPRWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 27/237 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +I +A+  AF         +     +++ I ++T + V  
Sbjct: 5   KEKHYTIVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
            +Q  +   +V +E IQD VE  L  +G   + R+Y++YR++  + R             
Sbjct: 65  AVQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDQHKEQRE---------GSW 115

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGL------ 193
             + ++  DG+ + FN  ++   +E    A   + DVS + +LSE    + + +      
Sbjct: 116 HCVSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-NGLTNKIVEEILG 174

Query: 194 ---SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
               E  ++  +I            +  V        L RE  + + +  Q+    +
Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKN---YILYREARSRIRENKQQIDAQK 228


>gi|89898044|ref|YP_515154.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            felis Fe/C-56]
 gi|89331416|dbj|BAE81009.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydophila felis
            Fe/C-56]
          Length = 1045

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/940 (51%), Positives = 625/940 (66%), Gaps = 16/940 (1%)

Query: 24   EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
                 V V++R+G +  F+P KIS A+ KAF A           +   I NLT + V   
Sbjct: 113  GSWHSVSVMRRDGNLVRFNPMKISAALEKAFRATLKITDVLLQEILSEINNLTNKIVEET 172

Query: 84   LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            L        + IE IQD VE  LM +GH+ + + Y+LYRE RS +R  +        I  
Sbjct: 173  LAKCSREQTIDIEAIQDIVETQLMIAGHYDVAKNYILYREARSRIREHKQEIAVQEEIVE 232

Query: 144  KLK-IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETA 201
            ++  ++  DGT    N  +L      AC       +   +    + N Y G+ ES++  A
Sbjct: 233  EVYDVVKSDGTTYQINKAQLTEKFVWACRRFPKTTNPHTLADMAFANFYSGIKESEIVLA 292

Query: 202  LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
             I ++R  IEKEP+YA V A  LL+ + +E +       +     ++   + +YF +YI 
Sbjct: 293  CIMAARANIEKEPDYAYVAAELLLDVVCQEAIG------KSIMDADLVEAHKQYFKQYIL 346

Query: 262  EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            +G     L+  + ++DL  LA  L   RD  F Y+G+Q LYDRY     G R+E  Q F+
Sbjct: 347  DG-DQYRLNPRLKEYDLDALAEALDISRDHQFSYMGVQTLYDRYLNQYEGRRLETTQIFW 405

Query: 322  MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            MRV+MGLAL E  +K   A+ FYNLLSSF +  +TPTLFNSG RH QLSSC+L+TV DDL
Sbjct: 406  MRVSMGLALNEGEDKTSWAITFYNLLSSFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDL 465

Query: 381  YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
              I+  + +NAML+K++GG+GNDWT VR  G+ I GTNGKS GVIPF+KVANDTAVAVNQ
Sbjct: 466  AHIYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSHGVIPFIKVANDTAVAVNQ 525

Query: 441  GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            GGKRKGA C YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WT
Sbjct: 526  GGKRKGATCVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKGTWT 585

Query: 501  LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            LFSPD+V  LH+ YG EF+  YE YER+ D GEIK+++KI A  LWRKML+ML+ETGHPW
Sbjct: 586  LFSPDDVPGLHEAYGFEFDKLYEEYERKVDTGEIKLYKKIPAEDLWRKMLSMLYETGHPW 645

Query: 561  ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            ITFKDP NIRS Q H GVV  SNLCTEI LNSS  ETAVCNLGS+NL+ H  N   D + 
Sbjct: 646  ITFKDPSNIRSAQDHAGVVRCSNLCTEILLNSSESETAVCNLGSVNLVEHIKNGDIDEEM 705

Query: 621  LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
            L  TI  A+R+LDNVIDIN +  ++A  +N THRA+GLG+MGFQ AL+ L+I YASPEAV
Sbjct: 706  LGETISIAIRILDNVIDINFYPTQEAANANLTHRAVGLGMMGFQDALYKLNISYASPEAV 765

Query: 681  EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAM 738
            E AD+S E I+++A+ +S  LA+ERG YSS+KGS WD+G  PID+I LL E R E  L M
Sbjct: 766  EFADKSSELIAYYALLSSSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEDKLLM 825

Query: 739  NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
            + + R  W  +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+
Sbjct: 826  DTSCRKDWAPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGE 885

Query: 799  FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
            FT+ N +L+ +LKQ  LWD  M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE
Sbjct: 886  FTIPNVYLIEKLKQLGLWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIE 945

Query: 859  SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK- 917
             ASRRQKW+D  QS+NLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS +  
Sbjct: 946  CASRRQKWLDMGQSVNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDI 1005

Query: 918  ---GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               G+  +         +           C+ +  CE CQ
Sbjct: 1006 NKRGIQPRWMKNKSASTSIVVERTRETPVCSLEEGCESCQ 1045



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 19/193 (9%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82
           K +   ++KRNG    F+  +I +A+  AF         +     ++  I ++T Q V  
Sbjct: 5   KEQHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEDTSPLPKDLEKSISSITRQVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  SG   + R Y++YR++  + R             
Sbjct: 65  VVQKIREGQVVTVERIQDMVENQLYVSGMQDVARNYIIYRDQHKERRK---------GSW 115

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
             + +M  DG L+ FN  ++   +E    A   + DV  + +LSE   N+ + +    +E
Sbjct: 116 HSVSVMRRDGNLVRFNPMKISAALEKAFRATLKITDVLLQEILSEI-NNLTNKI----VE 170

Query: 200 TALIFSSRTLIEK 212
             L   SR     
Sbjct: 171 ETLAKCSREQTID 183


>gi|283779061|ref|YP_003369816.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula
           staleyi DSM 6068]
 gi|283437514|gb|ADB15956.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula
           staleyi DSM 6068]
          Length = 945

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/952 (50%), Positives = 634/952 (66%), Gaps = 24/952 (2%)

Query: 14  AFPSLAYPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
           +FP       +   G+ QV KR+G +  FD ++I  AI KA  A  G  A+  +     +
Sbjct: 7   SFPQALATSSDSSAGLKQVRKRDGRLARFDLARIGTAITKAVTAELGAAAAHELPAH--V 64

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                    R+ +       + +E IQD+VE  LM +G H++ R YVLYRE ++  R A 
Sbjct: 65  AQSITDYTERVARWCDLQEQLAVESIQDEVERVLMTAGEHRVARRYVLYRESQAHKRKAS 124

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYD 191
           +            ++ +  G L +     LE  + +AC    Q   +  + ++  +++  
Sbjct: 125 AT-----------QVRLASGELTALPINALEHWIAQACELHGQAPQAAAITADIVRSLPT 173

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ--KATHHEMQ 249
            ++ + L  A I + R+ +E EP +  V A+ LL++   ++L   +        +  E +
Sbjct: 174 EVTPTQLFDATILALRSRVELEPVFTYVAAKLLLDRSDSQLLQNHHGAAILTPLSPSERR 233

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y  YF  Y+   V    LHESM+D++L  +A  +  ERD    YLG+Q LYDRYFL  
Sbjct: 234 AGYQRYFPEYVRAAVARGQLHESMLDYNLEAIAAFIVPERDSLLAYLGVQTLYDRYFLAH 293

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
            G R+E+PQ F+MR+AMGLAL E  K +R  EFY+LLS  HF  +TPTLFN+GT HPQLS
Sbjct: 294 EGLRVELPQIFWMRIAMGLALGEQNKLERVKEFYDLLSQLHFTSATPTLFNAGTCHPQLS 353

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L+TV DDL GIF A+Q+NA+L+K++GGLGNDWT +R LGA I GT GKSQG++PFLK
Sbjct: 354 SCYLSTVEDDLVGIFKAIQDNAILSKWAGGLGNDWTNIRALGATIRGTGGKSQGIVPFLK 413

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V +D AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LR+ TGD+RRRTHD++TANWIPDLF
Sbjct: 414 VVSDAAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRRTTGDERRRTHDLHTANWIPDLF 473

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV     WTLFSP+EV DLH  YG+ FE  Y +YE+ AD G IK+FR++SAV LWRKM
Sbjct: 474 MKRVLARDTWTLFSPNEVPDLHHTYGRAFEQKYLDYEQAADEGRIKLFRRVSAVDLWRKM 533

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           LT+LFETGHPW+T+KDP NIRSPQ HVGVVH+SNLCTEI LN+S+EETAVCNLGS+NL A
Sbjct: 534 LTLLFETGHPWVTWKDPSNIRSPQDHVGVVHNSNLCTEILLNNSAEETAVCNLGSVNLGA 593

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           H  +   D   L  TIRTAVR+LDNVID+N +   +A  +N  HR IGLGLMGFQ AL+ 
Sbjct: 594 HITDGVLDLAMLERTIRTAVRMLDNVIDLNFYPTPEAANANLRHRPIGLGLMGFQDALYA 653

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + I YAS  AV+ ADESME IS+ A+ AS ELA+ERG Y+SF GS WD+G  PID+I L+
Sbjct: 654 MQISYASDRAVQFADESMEAISYFALLASSELARERGKYASFAGSKWDRGYLPIDTIDLV 713

Query: 730 AEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
            + R  ++ + RT++L W+ +++ ++  G+RNSN +AIAPTATI+NI GVSQSI+P+Y+N
Sbjct: 714 EQERGIKIDVPRTAQLNWEVVRRAIREQGLRNSNVLAIAPTATISNIAGVSQSIEPTYRN 773

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LYVKSN+SG+FT VN +LV ELK   LW E M+  LKY+DG +  I  IP ++K+ + TA
Sbjct: 774 LYVKSNLSGEFTQVNEWLVEELKGLGLWSEEMLDQLKYYDGELAPIAEIPAEVKERYRTA 833

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           FEI+P WLIE A+RRQKWID  QSLNLYL  PSG+KLD +Y  AW +GLKTTYYLR+ +A
Sbjct: 834 FEIEPRWLIECAARRQKWIDMGQSLNLYLAAPSGRKLDEMYFLAWKLGLKTTYYLRTLAA 893

Query: 909 TSVEKSTLK------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T VEKST+             N     D          P  C    +CE CQ
Sbjct: 894 TQVEKSTIDVNRFGIQPRWMKNKSASGDIQIDRTLASAPEVCNLGGDCEACQ 945


>gi|221124254|ref|XP_002159508.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit [Hydra magnipapillata]
          Length = 846

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/845 (58%), Positives = 625/845 (73%), Gaps = 11/845 (1%)

Query: 107 MQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166
           M+ GHH+I R YVLYRE R+  RA      ++AP AP + ++ D+G  +  +  +L+  +
Sbjct: 1   MRGGHHEIARAYVLYRERRTQERA--KQVATEAPAAPVIHVI-DNGQRVPLDLAQLQFRI 57

Query: 167 EEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           E ACSGL  DV +  +L+ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR L 
Sbjct: 58  ETACSGLGADVKAAPILAETMRNLYDGVPLDEVYKAAILAARTLIEKDPDYTYATARLLF 117

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             + REVL       +     +MQ  Y +YF  +I+ G+ A LL E +  FDL  L + L
Sbjct: 118 HTISREVLG------RDVAQADMQEAYADYFPGFIKRGIAAELLDEKLQQFDLKRLGSAL 171

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           K  RD  F+YLGLQ LYDRYFLH   +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +
Sbjct: 172 KAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGLSLNEIDREARAIEFYEV 231

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LSSF FM STPTLFNSGT   QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT
Sbjct: 232 LSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWT 291

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+L
Sbjct: 292 RVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLEL 351

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RKNTGDDRRRTHDMNTANWIPDLFM+RV +   WTLFSP  V DLHDL+G EFE AY  Y
Sbjct: 352 RKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGAEFEKAYVAY 411

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E +A RGEIK  R + A  LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLC
Sbjct: 412 EEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLC 471

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           TEITLN+S  ETAVCNLGS+NLL H  +   D++KL  TI TA+R+LDNVIDIN + ++K
Sbjct: 472 TEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTAMRMLDNVIDINYYAVKK 531

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+ SN  HR +GLGLM FQ +L+ L IPYAS  AVE AD+SME IS++A  AS +LA+ER
Sbjct: 532 ARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSMEAISYYAYWASTDLARER 591

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G Y S+KGSLWD+GV P D++ +LA  R   + ++R+S L W+ L+ ++   GMRNSNC+
Sbjct: 592 GKYHSYKGSLWDKGVLPPDTLDMLANARGGYVEVDRSSTLDWNALRNKIAADGMRNSNCV 651

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPTATI+NI GV  SI+P + NL VKSN+SG+FTV+NS+LV +LK+  LWD+ M+ DL
Sbjct: 652 AIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLVRDLKRLGLWDDVMVMDL 711

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           K+ DGS+  I+R+P ++K+++ATAFE++  WL+E+A+RRQKWIDQAQSLN+Y+   SGKK
Sbjct: 712 KHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWIDQAQSLNIYMAGASGKK 771

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           LD  Y+ AWL GLKTTYYLR+ SAT  EKST+      L      D +          + 
Sbjct: 772 LDETYKLAWLRGLKTTYYLRTMSATHAEKSTVTAGLDALQFRHRPDQSVEAGKPSSVDAR 831

Query: 945 TSDTE 949
               +
Sbjct: 832 IQGGD 836


>gi|62185357|ref|YP_220142.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            abortus S26/3]
 gi|62148424|emb|CAH64192.1| putative ribonucleotide reductase large subunit [Chlamydophila
            abortus S26/3]
          Length = 1045

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/935 (51%), Positives = 629/935 (67%), Gaps = 16/935 (1%)

Query: 29   VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            V VI+R+G    F+P KIS A+ KAF A +         +   I  LT + V  +L    
Sbjct: 118  VSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEINGLTNKIVEEILGVCS 177

Query: 89   SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-I 147
                + IE IQD VE  LM  GH+ + + Y+LYRE RS +R  +    +   +  ++  +
Sbjct: 178  PEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDLVEEVYDV 237

Query: 148  MMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSS 206
            +  DGT  S N  +L      AC    +    +++    + N Y G+ ES++  A I ++
Sbjct: 238  VKSDGTTYSINKSQLIDKFIWACQRFPETTDPQVLADMAFANFYSGIKESEIALACIMAA 297

Query: 207  RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            R  IEKEP+YA V A  L++ + +E +       + AT  ++     + F  YI  G + 
Sbjct: 298  RANIEKEPDYAYVAAELLMDVVYQEAMG------KTATDSDLAEAQKQCFKNYILNG-ET 350

Query: 267  RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              L+  + ++DL  LA  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+M
Sbjct: 351  YRLNPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSM 410

Query: 327  GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            GLAL E  +K   A+ FYNLLS+F +  +TPTLFNSGTRH QLSSC+L+T+ DDL  I+ 
Sbjct: 411  GLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGTRHSQLSSCYLSTIQDDLAHIYK 470

Query: 386  ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             + +NAML+K++GG+GNDWT VR  G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRK
Sbjct: 471  VISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRK 530

Query: 446  GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
            GA   YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTLFSPD
Sbjct: 531  GATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPD 590

Query: 506  EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
            +V  LH+ YG EF+  YE YE + D GEIK+++KI A  LWRKML+ML+ETGHPW+TFKD
Sbjct: 591  DVPGLHEAYGTEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKD 650

Query: 566  PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            P NIR+ Q HVGVV  SNLCTEI LN S  ETAVCNLGS+NL+ H  N   +  KL  TI
Sbjct: 651  PSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLEETI 710

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
              A+R+LDNVID+N +  ++A  +N +HRAIGLG+MGFQ AL+ L+I YASPEAVE AD+
Sbjct: 711  SIAIRILDNVIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEFADK 770

Query: 686  SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743
            S E ++++AI +S  LA+ERG YSS+KGS WD+G  P+D+I LL E R E  + M+ + R
Sbjct: 771  SSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDTSCR 830

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
              W  +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N
Sbjct: 831  KDWTPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPN 890

Query: 804  SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             +L+++LK+  LWD+ M+ DLKY DGS+  IERIPDDLKKI  TAFEI+P WLIE ASRR
Sbjct: 891  VYLISKLKELGLWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRR 950

Query: 864  QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GV 919
            QKWID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS       G+
Sbjct: 951  QKWIDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINKRGI 1010

Query: 920  DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +         +           C+ +  CE CQ
Sbjct: 1011 QPRWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 96/237 (40%), Gaps = 27/237 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82
           K K   V+KRNG    F+  +I +A+  AF         +     +++ I ++T + V  
Sbjct: 5   KEKHYTVVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           ++Q  +   +V +E IQD VE  L  +G   + R+Y++YR+   + R             
Sbjct: 65  VIQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDHHKEQRE---------GSW 115

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGL------ 193
             + ++  DG+ + FN  ++   +E    A   + DVS + +LSE    + + +      
Sbjct: 116 HCVSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-NGLTNKIVEEILG 174

Query: 194 ---SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
               E  ++  +I            +  V        L RE  + + +  Q+    +
Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKN---YILYREARSRIRENKQQIDAQK 228


>gi|330443802|ref|YP_004376788.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila
            pecorum E58]
 gi|328806912|gb|AEB41085.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            pecorum E58]
          Length = 1047

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/939 (51%), Positives = 633/939 (67%), Gaps = 18/939 (1%)

Query: 27   KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-Q 85
            +GV +I+R+G    F+P KIS A+ KAF A               I  LT + V  ++ Q
Sbjct: 116  RGVLIIRRDGTSVKFNPMKISAALEKAFRATLQINGITPSPTVLEINELTLKIVEEIMAQ 175

Query: 86   HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAP 143
            H   A  +HIE IQD VE  LM +G + + + Y+LYRE R   R  +    +        
Sbjct: 176  HVGKAHGIHIEAIQDIVEKQLMIAGFYDVAKSYILYREARMRARENKVSEVNSECFVEDE 235

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202
              +++ +D T    N   LE     AC+   +  SSK +    + N++ G+ ES++ +A 
Sbjct: 236  VYRVVREDQTEYLLNKAELEKRFTWACARFPETTSSKTLADMAFANLFSGVKESEVVSAC 295

Query: 203  IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            I ++R  IEKEP+YA V A  L E + +E +         A   ++   +  YF +YI E
Sbjct: 296  IMAARANIEKEPDYAFVAADLLHEVVYQETVG------LSAVSSKLTDAHRRYFKQYILE 349

Query: 263  GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            G +   L+  + ++DL  LA  L   RD  F Y+G+Q L+DRYF    G R+E  Q F+M
Sbjct: 350  G-ENYRLNPQLKEYDLDALAEVLDLTRDRKFSYMGVQNLFDRYFNQHEGKRLETAQIFWM 408

Query: 323  RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            RV+MGLAL E  EK   A+ FY+LLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL 
Sbjct: 409  RVSMGLALNEGKEKTSWAITFYHLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLQ 468

Query: 382  GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
             I+  + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTAVAVNQG
Sbjct: 469  HIYKVISDNALLSKWAGGIGNDWTDVRARGAKIKGTNGKSQGVIPFIKVANDTAVAVNQG 528

Query: 442  GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            GKRKGA C YLE+WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q   WTL
Sbjct: 529  GKRKGAACVYLESWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLKQKGIWTL 588

Query: 502  FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            FSPD+V  LH+ YG EFE  YE YE++ + GEI+++RK+ A  LWRKML+ML+ETGHPW+
Sbjct: 589  FSPDDVPGLHEAYGLEFEKLYEEYEQKIETGEIQLYRKVEAEVLWRKMLSMLYETGHPWL 648

Query: 562  TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            TFKDP NIR+ Q HVGVV  SNLCTEI LNSS  ETAVCNLGS+NL+ H  N + +  KL
Sbjct: 649  TFKDPSNIRAAQDHVGVVRCSNLCTEILLNSSESETAVCNLGSLNLVEHLENGEINEAKL 708

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            A TIR AVR+LDNVID+N + I +A ++N THRA+GLG MGFQ AL+  +I YAS EAVE
Sbjct: 709  AETIRIAVRILDNVIDLNFYPIPEAAQANLTHRAVGLGCMGFQDALYEKNISYASQEAVE 768

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM--N 739
             ADE  E I++HAI +S ELA+ERG Y+S+KGS WD+G+ PID+I LL + R E  +  +
Sbjct: 769  FADEVAEIIAYHAILSSTELAKERGVYASYKGSKWDRGLLPIDTIDLLKQARGEQYVLMD 828

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             + R  W+ +++ V+  GMRNS+ M IAPTATI+NI G++QSI+P+Y+NL+VKSN+SG+F
Sbjct: 829  TSCRKDWEPVREAVRKYGMRNSHLMTIAPTATISNIIGITQSIEPTYKNLFVKSNLSGEF 888

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            T+ N +L+ +LK   LWDE M+ DLKY DGS+  IERIP++LKK+  TAFEI+P WLIE 
Sbjct: 889  TIPNVYLIRKLKSLGLWDEDMLDDLKYFDGSLSEIERIPENLKKVFVTAFEIEPEWLIEC 948

Query: 860  ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK-- 917
            ASRRQKWID  QSLNLYL EP+GKKL  +Y  AW  GLKTTYYLRS +ATSVEKS     
Sbjct: 949  ASRRQKWIDMGQSLNLYLAEPNGKKLSTMYLTAWEKGLKTTYYLRSLAATSVEKSFTDIN 1008

Query: 918  --GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              G+  +         +         + C+ +  CE CQ
Sbjct: 1009 KRGIQPRWMKNMSASTSIIVERTAKNAVCSMEEGCESCQ 1047



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82
           K K   ++KRNG    F+  +I +A+  AF       + A     ++  I ++T + V  
Sbjct: 5   KEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEEDAPLPKDLEKSISDITSKVVGE 64

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +++      +V +E IQD VE  L  +G   + R+Y++YR++  + R             
Sbjct: 65  VIEKISQGQVVTVERIQDIVESQLYVNGLQDVARDYIVYRDQHKEQRE---------SPW 115

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + I+  DGT + FN  ++   +E+A             +     +    +  ++    
Sbjct: 116 RGVLIIRRDGTSVKFNPMKISAALEKAFR----------ATLQINGITPSPTVLEINELT 165

Query: 203 IFSSRTLIEKE 213
           +     ++ + 
Sbjct: 166 LKIVEEIMAQH 176


>gi|254444373|ref|ZP_05057849.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198258681|gb|EDY82989.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1062

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/938 (45%), Positives = 591/938 (63%), Gaps = 35/938 (3%)

Query: 26   IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            +K V++I+R+  V  +   KI  A+ +AF+++E           ++   +TE+       
Sbjct: 151  LKNVRLIRRDRKVVPWKQEKIEIAVRRAFLSLEQNSDPAV----EVAAIVTERIQAT--- 203

Query: 86   HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                   V IE++QD V+  LM+ GH K+   YVLYRE+R   R  ++   +       +
Sbjct: 204  ---GQAFVEIEEVQDIVQEELMKQGHFKVAAHYVLYREQRRAHREQEALQLATDTEQDSM 260

Query: 146  KIMMD-DGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALI 203
             ++   DG+   ++   L+  +E A  GL   ++   +  E  ++++D +SE+DLE  + 
Sbjct: 261  VVVKKTDGSTYFWDGIDLKKRIEFASIGLDLCLNHDEIEIELRRSIFDEISEADLEKTIT 320

Query: 204  FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             ++RTLIE++ ++AK  AR  L  + +E L     +        ++  + + F  Y+  G
Sbjct: 321  LNARTLIEQDADFAKFAARIKLSYMYQETLGWDIVRDG---IGAIKTFHQKKFKEYVRHG 377

Query: 264  VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRIEMPQA 319
            +    L+  + ++D+  LA  L    D  F+YLG+Q LYDRY           RIE PQ 
Sbjct: 378  IMIGRLNPKLKEYDINKLAKQLDPSADLEFDYLGIQTLYDRYLIIDKTQKQQRRIETPQF 437

Query: 320  FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            F+MRVAMGL   E E+E +A   Y L  S  F  STPTLFN+GT H QLSSC+L  V D 
Sbjct: 438  FWMRVAMGLFHAEEERELKAKTLYKLYKSRRFCSSTPTLFNAGTCHSQLSSCYLYYVDDS 497

Query: 380  LYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI    + +NA L+K++GGLG  WT VRG G++I GTNG+SQG++PFLK+ ND  +AV
Sbjct: 498  IEGIMQRGIADNAYLSKWAGGLGGSWTSVRGTGSYIKGTNGESQGIVPFLKLHNDLLIAV 557

Query: 439  NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            NQGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRR HDMNTANW+PDLFMKR+     
Sbjct: 558  NQGGKRRGSGCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQM 617

Query: 499  WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            W+ F   EV DLHD YG +FE  Y  YE +A +GEI   +++ A+ +W++ML+M+FETGH
Sbjct: 618  WSFFRTSEVPDLHDSYGADFEKKYTEYEAKAAKGEIW-SKEVPAIEVWKRMLSMIFETGH 676

Query: 559  PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFD 617
            PWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S EETAVCNLGSI L  H   +   D
Sbjct: 677  PWITFKDPCNVRSPQDHCGVVHSSNLCTEITLNTSKEETAVCNLGSIVLDQHLDKDGNID 736

Query: 618  YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +DKL  T++TA+R LDNVIDIN +  E AK +N  HR IGLG+MG Q+ L+L   P+AS 
Sbjct: 737  HDKLRETVQTAIRALDNVIDINFYPTEAAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQ 796

Query: 678  EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-EL 736
            EAVE  DE ME ++++AI AS +LA ERG Y S+KGS WD+G+ P D++ LL + R  E+
Sbjct: 797  EAVEFNDEIMEAVAYYAIEASSDLAAERGTYKSYKGSKWDRGLLPQDTVDLLEKERGVEV 856

Query: 737  AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             + R  +L W  ++++V   GMRNSN MAIAPTATI+NI G S  I+P Y+NL+VKSN+S
Sbjct: 857  DVPRGGKLDWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLS 916

Query: 797  GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            G+F ++N  LV +LK R LW+  M  +LKY DG +  I+ IP DLK  + TAF +D  WL
Sbjct: 917  GEFIILNQHLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWL 976

Query: 857  IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
            + +A+RRQKWIDQ+QS+NL+L  P  K L  +YR AW  GLKTTYYLR+  A+++EK+T+
Sbjct: 977  VLAAARRQKWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKTTYYLRTLGASNIEKATV 1036

Query: 917  KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     V                       CE CQ
Sbjct: 1037 GAKKELRGIVGGKAAPPEP------------EVCESCQ 1062



 Score = 46.0 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 13/151 (8%)

Query: 41  FDPSKISRAIMKAFMAV---EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA--LIVHI 95
           FD S+I   I  A   V   +      +   +  +  +  Q V +L   +       V +
Sbjct: 53  FDLSEIVDTIGNALANVLLSKNNTEVFTDENRQWVCTVARQVVDKLESKSPETLESRVGL 112

Query: 96  EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLI 155
            ++ D +E +L+ +  + + +  ++ R         +            ++++  D  ++
Sbjct: 113 SELYDLIENTLVDNNAYDVAKSMLINR--------QRKLVADKTIGLKNVRLIRRDRKVV 164

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
            +  +++E+ V  A   L+  S   V     
Sbjct: 165 PWKQEKIEIAVRRAFLSLEQNSDPAVEVAAI 195


>gi|294055009|ref|YP_003548667.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
            akajimensis DSM 45221]
 gi|293614342|gb|ADE54497.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
            akajimensis DSM 45221]
          Length = 1080

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/942 (45%), Positives = 593/942 (62%), Gaps = 29/942 (3%)

Query: 28   GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
             +++I+RNG V  +  SKI  A+ K+F+++           + +   L          +N
Sbjct: 153  SIRLIRRNGQVVPWSESKIEIAVRKSFLSLHLDSGPAMDVARAVTDRL----------NN 202

Query: 88   KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-K 146
                 ++IED+QD V+  LM+ GH K+   Y+LYR  R+ +R     ++ D      +  
Sbjct: 203  SGQAFINIEDVQDTVQEELMRQGHFKVAESYILYRAHRTRLRDESGETEVDETQQESMIV 262

Query: 147  IMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +  ++G    ++   L+  +E A  GL+  +S+  + +E  +++Y  +   DL+  +I +
Sbjct: 263  VTEENGENTFWDGVDLKRRIEFATIGLELTLSNDEIETELRRSLYPEMKREDLQKTIILN 322

Query: 206  SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            ++ LIE++ ++A+   R LL  +  EVL     +       +++  +      Y++  V+
Sbjct: 323  AKALIERDADFARFAGRVLLSYIYEEVLDWDIVRDG---VEQLKEAHRRGLKTYLKRAVE 379

Query: 266  ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRIEMPQAFF 321
               +H  ++++DL  L+  L    D  F+YLG+Q LYDRY           R+E+PQ F+
Sbjct: 380  IERVHPKLLEYDLKRLSEALDPSADLDFDYLGVQTLYDRYLIVDKTAKKHRRLEVPQFFW 439

Query: 322  MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +RVAMGL   E  ++E   +  YNL  S  F  STPTLFNSGT H QLSSC+L  V D +
Sbjct: 440  IRVAMGLFHAEKEDREGYVISLYNLYKSRRFCSSTPTLFNSGTLHSQLSSCYLYKVDDSI 499

Query: 381  YG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
               +   + +NA L+K++GGLG  WT VRG G  I GTNG+SQGVIPFLK+ ND  VAVN
Sbjct: 500  ESIMHRGIADNAFLSKWAGGLGGSWTAVRGTGGFIKGTNGESQGVIPFLKLHNDQLVAVN 559

Query: 440  QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
            QGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRRTHDMNTANWIPDLFMKR+     W
Sbjct: 560  QGGKRRGSGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDW 619

Query: 500  TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            TLF  +E  DLHDLYGK FE  Y  YE  A+RGE+   +K+ A+ LW+ ML M+FETGHP
Sbjct: 620  TLFRSNETPDLHDLYGKAFEDRYCEYEAMAERGEL-FGKKVPAIELWKSMLRMIFETGHP 678

Query: 560  WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDY 618
            WITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S EETAVCNLGS+ L      +   D+
Sbjct: 679  WITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSDEETAVCNLGSVVLDSHLDKDGNLDH 738

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +KL  T+  AVR LDNVIDIN +  E AK +N  HR IGLG+MG Q+AL +  I +AS  
Sbjct: 739  EKLRETVSIAVRALDNVIDINFYPTEAAKTANSRHRPIGLGVMGLQNALFVKDIAFASQA 798

Query: 679  AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737
            AVE  DE ME I+++A  AS +LA E G YS++KGS WD+G+ P D++ +L   R E + 
Sbjct: 799  AVEFNDEFMEAIAYYAYEASSDLAAEHGTYSTYKGSKWDRGLMPQDTLDMLQSERGEEVV 858

Query: 738  MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
            + R  ++ W+ L+ ++   GMRNSN +AIAPTATI+NI G S  I+P+Y+NL+VKSN+SG
Sbjct: 859  VPRAGKMDWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSG 918

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            DF V+N  LV +LK R LWD+ M+  LKY DG +  I+ IP DL++ + TAF I+  + I
Sbjct: 919  DFIVLNGHLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFI 978

Query: 858  ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
            ++A+RRQKWIDQ+QS+NL+L EP  K L  +YR AW  GLKTTYYLR+  A+++EK+T+ 
Sbjct: 979  DAAARRQKWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKTTYYLRTLGASNIEKATVS 1038

Query: 918  GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-----TECEVCQ 954
                         P    ++     +C+ +      ECE CQ
Sbjct: 1039 VKKEVRGRAGDATPAKKEYTDAEVKACSLEAMMNGGECEACQ 1080


>gi|269302785|gb|ACZ32885.1| ribonucleoside-diphosphate reductase alpha subunit [Chlamydophila
            pneumoniae LPCoLN]
          Length = 1044

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/933 (50%), Positives = 622/933 (66%), Gaps = 17/933 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            +I+R+GG   F+P KIS A+ KAF A               I +LT + V  +L      
Sbjct: 120  IIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEINDLTLRIVEDVL-SLHGE 178

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAPKLKIM 148
              +++E+IQD VE  LM +G++ + + Y+LYRE R+  RA +     +   P      + 
Sbjct: 179  GAINLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEETYVVQ 238

Query: 149  MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207
             +DGT        LE     AC        S+++    + N+Y G+ E ++ TA I ++R
Sbjct: 239  KEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMAAR 298

Query: 208  TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
              IE+EP+YA + A  L   L  E L    + P       +  ++ ++F  YI  G +  
Sbjct: 299  ANIEREPDYAFIAAELLTSSLYEETLGCNSQDP------NLSEIHKKHFKEYILNG-EEY 351

Query: 268  LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
             L+  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+MG
Sbjct: 352  RLNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMG 411

Query: 328  LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LAL E  +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  
Sbjct: 412  LALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKV 471

Query: 387  LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG
Sbjct: 472  ISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 531

Query: 447  AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
            A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLFSPD+
Sbjct: 532  AMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDD 591

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWITFKDP
Sbjct: 592  VPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDP 651

Query: 567  CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N + D +KL  TI 
Sbjct: 652  SNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKETIS 711

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE +DE 
Sbjct: 712  IAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDEC 771

Query: 687  MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744
             E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E    ++ +S+ 
Sbjct: 772  SEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKK 831

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
             W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ N+
Sbjct: 832  DWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNT 891

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  SRRQ
Sbjct: 892  YLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQ 951

Query: 865  KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            KWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +      + 
Sbjct: 952  KWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQ 1011

Query: 925  AVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954
               + + ++ST           C+ +  CE CQ
Sbjct: 1012 PRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 37/236 (15%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    F+  +I +A+  AF         +     +++ I  +T + V  +L
Sbjct: 7   KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                  +V +E IQD VE  L  SG   + R+Y++YR++R   R            +  
Sbjct: 67  AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQRKAER---------GNSSSI 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  DG    FN  ++   +E+A             +     M    + S++    + 
Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKAFR----------ATLQINGMTPPATLSEINDLTLR 167

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
                               +  L  E    + +         M   Y +    YI
Sbjct: 168 IVED----------------VLSLHGEGAINLEEIQDIVEKQLMVAGYYDVAKNYI 207


>gi|15618892|ref|NP_225178.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae CWL029]
 gi|15836515|ref|NP_301039.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae J138]
 gi|16752044|ref|NP_445410.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae AR39]
 gi|33242352|ref|NP_877293.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila
            pneumoniae TW-183]
 gi|7388068|sp|Q9Z6S5|RIR1_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
            AltName: Full=Ribonucleotide reductase
 gi|4377312|gb|AAD19121.1| Ribonucleoside Reductase, Large Chain [Chlamydophila pneumoniae
            CWL029]
 gi|7189784|gb|AAF38661.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila
            pneumoniae AR39]
 gi|8979357|dbj|BAA99191.1| ribonucleoside reductase, large chain [Chlamydophila pneumoniae J138]
 gi|33236863|gb|AAP98950.1| ribonucleoside reductase large chain [Chlamydophila pneumoniae
            TW-183]
          Length = 1044

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/933 (50%), Positives = 623/933 (66%), Gaps = 17/933 (1%)

Query: 31   VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
            +I+R+GG   F+P KIS A+ KAF A               I +LT + V  +L      
Sbjct: 120  IIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEINDLTLRIVEDVL-SLHGE 178

Query: 91   LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAPKLKIM 148
              +++E+IQD VE  LM +G++ + + Y+LYRE R+  RA +     +   P      + 
Sbjct: 179  EAINLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEETYVVQ 238

Query: 149  MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207
             +DGT        LE     AC        S+++    + N+Y G+ E ++ TA I ++R
Sbjct: 239  KEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEDEVTTACIMAAR 298

Query: 208  TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
              IE+EP+YA + A  L   L  E L    + P       +  ++ ++F  YI  G +  
Sbjct: 299  ANIEREPDYAFIAAELLTSSLYEETLGCSSQDP------NLSEIHKKHFKEYILNG-EEY 351

Query: 268  LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
             L+  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+MG
Sbjct: 352  RLNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMG 411

Query: 328  LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LAL E  +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+  
Sbjct: 412  LALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKV 471

Query: 387  LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG
Sbjct: 472  ISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 531

Query: 447  AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
            A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLFSPD+
Sbjct: 532  AMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDD 591

Query: 507  VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
            V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWITFKDP
Sbjct: 592  VPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDP 651

Query: 567  CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N++ D +KL  TI 
Sbjct: 652  SNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDKLDEEKLKETIS 711

Query: 627  TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE +DE 
Sbjct: 712  IAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDEC 771

Query: 687  MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744
             E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E    ++ +S+ 
Sbjct: 772  SEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKK 831

Query: 745  PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
             W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ N+
Sbjct: 832  DWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNT 891

Query: 805  FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            +L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  SRRQ
Sbjct: 892  YLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQ 951

Query: 865  KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            KWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +      + 
Sbjct: 952  KWIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQ 1011

Query: 925  AVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954
               + + ++ST           C+ +  CE CQ
Sbjct: 1012 PRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044



 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 21/194 (10%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLL 84
           K   ++KRNG    F+  +I +A+  AF         +     +++ I  +T + V  +L
Sbjct: 7   KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                  +V +E IQD VE  L  SG   + R+Y++YR++R   R            +  
Sbjct: 67  AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQRKAER---------GNSSSI 117

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + I+  DG    FN  ++   +E+A             +     M    + S++    + 
Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKAFR----------ATLQINGMTPPATLSEINDLTLR 167

Query: 205 SSRTLIEKEPNYAK 218
               ++      A 
Sbjct: 168 IVEDVLSLHGEEAI 181


>gi|72163400|ref|YP_291057.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
 gi|71917132|gb|AAZ57034.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
          Length = 821

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 523/821 (63%), Positives = 637/821 (77%), Gaps = 25/821 (3%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
            +R+  +V EAC GL   S++ V++E  +  Y G++ ++LE ALI ++RT +E +P+Y+ 
Sbjct: 1   MERIRKVVAEACQGLPGASAETVIAEATRGFYPGITPAELELALIMAARTFVETDPDYSY 60

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           V+AR LL+KLRRE LT +   P +ATH +M   YPEY   +I  G++   L   + DFDL
Sbjct: 61  VSARLLLDKLRREALTFLSGHPDEATHADMARRYPEYLRAFITRGIELEHLTPELADFDL 120

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L   L+ ERD  F YLGLQ LYDRYFLH  G+R E+PQAF MRVAMG+AL E ++  R
Sbjct: 121 DRLGAALRPERDLNFTYLGLQTLYDRYFLHHEGTRYELPQAFLMRVAMGVALHEDDRNAR 180

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A+EFY LLSSF FMCSTPTLFN+GTR PQLSSCFLTTV DDL  IF A+  NA+L+KYSG
Sbjct: 181 AIEFYELLSSFDFMCSTPTLFNAGTRRPQLSSCFLTTVGDDLAEIFRAISNNALLSKYSG 240

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           GLGNDWTPVRGLGAHI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHID
Sbjct: 241 GLGNDWTPVRGLGAHIKGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHID 300

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEFLDLRKNTGD+RRRTHDMNTANW+PDLF++RV  +A WTLFSPDEV DLHD YG++F
Sbjct: 301 IEEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFSPDEVPDLHDRYGEDF 360

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
             AY  YER ADRGEI+VFR++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GV
Sbjct: 361 ARAYVAYERAADRGEIRVFRRVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGV 420

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           VHSSNLCTEITLN+S +E AVCNLGS+NL  H   +  D ++L  T+RTAVR+LDNVID+
Sbjct: 421 VHSSNLCTEITLNTSLDEVAVCNLGSVNLANHVGPDGLDAERLRRTVRTAVRMLDNVIDV 480

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N +TI +A+++N  HR IGLGLMG+Q AL  L +P ASPEAVE ADESME +S++AI AS
Sbjct: 481 NLYTIPEAERANMRHRPIGLGLMGYQDALFTLRLPVASPEAVEFADESMELLSYYAIEAS 540

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDELKKRVKTIG 757
            +LA ERG+YSSF+GSLW +G+ PIDS+ LLAE  R +L ++RT RL WD L+++V+T G
Sbjct: 541 ADLAAERGSYSSFEGSLWSRGILPIDSLELLAEARRGDLDVDRTQRLDWDTLREKVRTTG 600

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRNSN MAIAPTATIANI GV+ SI+P Y+NLYVK+NMSGDFTVVN  LV +LK+R LWD
Sbjct: 601 MRNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSGDFTVVNPSLVRDLKERGLWD 660

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E M++ LK HDGS+G I+R+P+DLK ++ATAFEIDP+WL+++ASRRQKWIDQAQSLNLY+
Sbjct: 661 EEMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLVDAASRRQKWIDQAQSLNLYM 720

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH- 936
            EPSG+KLD +YR+AW  GLKTTYYLRS+ AT VEKSTL+G DG+LNAV     ++ +  
Sbjct: 721 AEPSGRKLDELYRRAWRKGLKTTYYLRSQGATHVEKSTLRGTDGRLNAVTPVAVSAPSPS 780

Query: 937 -----------------------SLGIPSSCTSDTECEVCQ 954
                                  +         D ECE CQ
Sbjct: 781 PTPAPRPAAAPPRSAAGPAPDLTAEAAAFCAVDDPECEACQ 821


>gi|171913277|ref|ZP_02928747.1| ribonucleotide-diphosphate reductase subunit alpha [Verrucomicrobium
            spinosum DSM 4136]
          Length = 1109

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/971 (42%), Positives = 591/971 (60%), Gaps = 43/971 (4%)

Query: 13   DAFPSLAYPFP-EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
            ++        P   +   ++I+RNG V S++P+KI  A+ KAF++VE            +
Sbjct: 153  ESMSDTEANAPVGLLVPTKIIRRNGQVVSWNPNKIELAVSKAFVSVEMGTTHAKA----V 208

Query: 72   IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS--DVR 129
             + LT Q +    Q       +HIE +QD VE  LM+ GH K  + Y+LYR  R+    R
Sbjct: 209  AEALTHQMIEEAKQ------FIHIEQVQDLVEEQLMRQGHFKAAKAYMLYRALRADSRER 262

Query: 130  AAQS-------HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
             A+S           D      + + + D   I ++   L+  ++ A  GL   +S   +
Sbjct: 263  DAKSAADISAPELPVDDGQQEMIMVRISDKETILWDGLDLQRRIDFAMMGLDLCISRAEI 322

Query: 182  LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
             S   +++   +S   L+  +I +++ L+ ++ ++A+  AR LL  +  EVL     +  
Sbjct: 323  ESSLRRSLATDISLDHLKQTIILNAKALMARDADFARFAARILLSYIYEEVLGWDIVRDG 382

Query: 242  KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                  +Q  +   F R ++ GV+   ++  ++DFDL  LA+ L    D  F+YLG+  L
Sbjct: 383  ---IGSLQTFHRRAFRRNLQRGVEIDRINAKLLDFDLDKLADALDPAADMDFDYLGIHTL 439

Query: 302  YDRYFLHING----SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            YDRY +         R+E PQ F+MRVAMGL ++E +  ++ +  Y +  S  F  STPT
Sbjct: 440  YDRYLIIDKKTKPAKRLETPQLFWMRVAMGLFVREEDPTEKVIALYRMYKSRRFCSSTPT 499

Query: 358  LFNSGTRHPQLSSCFLTTVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            LFNSGT H QLSSC+L  V D++  I    + ENA L+K++GGLG  WT VRG G++I G
Sbjct: 500  LFNSGTLHSQLSSCYLYKVDDNIESIMIRGIAENAFLSKWAGGLGGSWTAVRGTGSYIKG 559

Query: 417  TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            TNG+SQGVIPFLK+ ND  VAVNQGGKR+G+ CAYLETWH D+ +FLDLRKN GD+RRRT
Sbjct: 560  TNGESQGVIPFLKLHNDQLVAVNQGGKRRGSGCAYLETWHNDIVDFLDLRKNVGDERRRT 619

Query: 477  HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            HDMNTANW+PDLFMKR+   + WTLF  +E  DLH+LYG+ FE  Y  YE  A  G++ +
Sbjct: 620  HDMNTANWVPDLFMKRMEARSHWTLFRANETPDLHELYGQAFEKRYLEYEAMAAEGKV-L 678

Query: 537  FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
             ++I A+ LW+ ML  +FETGHPWITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S +E
Sbjct: 679  GKQIPAIDLWKSMLKAIFETGHPWITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSKDE 738

Query: 597  TAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            TAVCNLGS+ L  H       D+ KL  T+R AVR LDNVIDIN +  + AK +N  HR 
Sbjct: 739  TAVCNLGSVILENHLDEAGNIDHTKLRETVRMAVRALDNVIDINFYPTDAAKTANTRHRP 798

Query: 656  IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
            IGLG+MG Q +L+   +P+AS EAV+  DE ME ++++A  AS +LA E G YS++ GS 
Sbjct: 799  IGLGVMGLQYSLYRKGLPFASKEAVDFNDEVMEAVAYYAYEASSDLAAELGKYSTYPGSK 858

Query: 716  WDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W +G+ P D++ LL + R   + + R  ++ W  +++++   GMRNSN +AIAPTATI+N
Sbjct: 859  WSRGLLPQDTVDLLEKERGEPVDVVRGGKMDWSPVREKIAKQGMRNSNVLAIAPTATISN 918

Query: 775  ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            I G S  I+P + N + KSN+ G++ V+N +LV +LK+RDLW   +   LKY DG +  +
Sbjct: 919  IMGSSPCIEPLFTNNFTKSNLGGNYVVLNPYLVKDLKKRDLWTNEVAERLKYFDGELAAM 978

Query: 835  ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
            + IP DLK+ +ATAF +D  +++++A+RRQKWIDQ+QS+NL+  +   + L  +YR AW 
Sbjct: 979  DEIPADLKRKYATAFSVDWAYVLDAAARRQKWIDQSQSVNLWCPDTDMRTLSHMYRAAWR 1038

Query: 895  MGLKTTYYLRSRSATSVEKSTLK-----------GVDGKLNAVPVTDPNSSTHSLGIPSS 943
             GLKTTYYLR++ A+S+E ST +                 +   V               
Sbjct: 1039 KGLKTTYYLRTKGASSIEGSTTQVQTDIRGVVAQTAAAVADKAKVDADEYKQFLAEARRK 1098

Query: 944  CTSDTECEVCQ 954
              +  +CE+CQ
Sbjct: 1099 AQAGEDCEMCQ 1109



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITR 116
           V+      +  + +  K   E+    LL      +   IE +       L++   H + R
Sbjct: 91  VKVFSLQVAQELHERAKRNAEKVGDELLSLTAQEIYHAIEHV-------LVKQNAHDVAR 143

Query: 117 EYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169
             V+ R +R +  +    +     + P  KI+  +G ++S+N  ++E+ V +A
Sbjct: 144 S-VIARRQRLESMSDTEANAPVGLLVPT-KIIRRNGQVVSWNPNKIELAVSKA 194


>gi|284032752|ref|YP_003382683.1| ribonucleoside-diphosphate reductase subunit alpha [Kribbella
           flavida DSM 17836]
 gi|283812045|gb|ADB33884.1| ribonucleoside-diphosphate reductase, alpha subunit [Kribbella
           flavida DSM 17836]
          Length = 806

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/802 (62%), Positives = 628/802 (78%), Gaps = 9/802 (1%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
             + N +RL ++V EA +GL  V  +++L+ET  + YDG+ + ++E AL+ ++RT +E+E
Sbjct: 13  TAALNVERLRLMVAEASAGLDAVDPELILTETLGSCYDGIPQHEVELALVMAARTYVEQE 72

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y++  AR LL+++RREVL  V+ +P++A+  +M+  Y  YF RY+  G++A LL   +
Sbjct: 73  PQYSQAAARLLLDQIRREVLGRVHGEPRQASQADMRTAYAGYFPRYLAVGIEAGLLDHEL 132

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
             FDL  LA  ++ ERD  F +LGLQ LYDRY LHI+ +R E+PQAFF+RVAMG+ALKE 
Sbjct: 133 ASFDLDRLAAAIRPERDLDFTFLGLQTLYDRYLLHIDKTRFELPQAFFLRVAMGMALKEH 192

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++E RA+EFY LLSSF FM STPTLFN+GT  PQLSSCFLTTV DDL GIF  ++ NA+L
Sbjct: 193 DREARALEFYELLSSFRFMSSTPTLFNAGTTRPQLSSCFLTTVEDDLAGIFTGIRNNALL 252

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           AKYSGGLGNDWTP+RG+GA I GTNG+SQGV+PFLK+ANDTA+AV+QGGKRKGAVCAYLE
Sbjct: 253 AKYSGGLGNDWTPIRGIGATIRGTNGESQGVVPFLKIANDTAIAVHQGGKRKGAVCAYLE 312

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
           TWH+DVE+FL+LRKNTGD+RRRTHDMNTANW+PDLF++RV  +AGWTLFSPDEV  LHDL
Sbjct: 313 TWHVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFSPDEVPGLHDL 372

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG  F  AYE YER ADRGEI+VFR++ AV LWR+MLT+LFETGHPWITFKD CN+RSPQ
Sbjct: 373 YGAAFAAAYEQYERAADRGEIRVFRRVRAVDLWRRMLTVLFETGHPWITFKDACNLRSPQ 432

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           QH GVVHSSNLCTEITLN++ +ETAVCNLGS+NL+AH      D   L  T+RTAVR+LD
Sbjct: 433 QHDGVVHSSNLCTEITLNTTVDETAVCNLGSVNLVAHLTPAGLDAGLLRDTVRTAVRMLD 492

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N +T  +++++N  HR +GLGLMGF  AL  L +PYAS  AV  AD SME +S+H
Sbjct: 493 NVIDVNFYTTPESERANQRHRPVGLGLMGFADALFALRVPYASDAAVAFADTSMEQLSYH 552

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKR 752
           AI AS +LA ERG Y ++ GSLW QG+ PIDS+ LL E R  +L ++ ++ L WD L+ +
Sbjct: 553 AIEASSDLAAERGTYRTYDGSLWSQGILPIDSVELLREARGGDLDVDTSTTLDWDALRAK 612

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  GMRNSN +AIAPTATI+NICGVSQSI+P+Y NL+VKSNMSG+FTV N +LV +LK 
Sbjct: 613 VRRDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFTVANPYLVADLKA 672

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           R LWD+ M+ DLKYHDG +  IERIP DL+ ++ATAFEIDP WL+ +ASRRQKWIDQ+QS
Sbjct: 673 RGLWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAASRRQKWIDQSQS 732

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNLY+ EPSGK LD +YR AW  GLKTTYYLRS+SAT VEKSTL+G DG+LNAVPV    
Sbjct: 733 LNLYVSEPSGKALDELYRSAWRHGLKTTYYLRSQSATHVEKSTLRGTDGRLNAVPVEPVA 792

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +             D +CE CQ
Sbjct: 793 AV--------CAIDDQDCEACQ 806


>gi|297563528|ref|YP_003682502.1| ribonucleoside-diphosphate reductase, subunit alpha [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847976|gb|ADH69996.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 882

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/839 (61%), Positives = 617/839 (73%), Gaps = 35/839 (4%)

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG        R+E +V EAC+ L  VS++ VL+E  +  Y G+S++++E AL+ ++R+ 
Sbjct: 45  KDGN-PPAAVDRIEHVVAEACARLTGVSAEKVLTEARRGFYPGISDAEVELALVMAARSF 103

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +E +P+Y+ V AR LL+KLRRE LT +   P  A   EM   Y  Y   Y+  G+    L
Sbjct: 104 VEVDPDYSYVAARLLLDKLRREALTFISGAPDAAGQSEMGERYAAYLAAYVGRGIDLGQL 163

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
             ++  FDL  L   L+ ERD  F +LG+Q LYDRYFLH +  R E+PQAFFMRVAMGLA
Sbjct: 164 DPALAKFDLARLGAALRPERDEQFTFLGIQTLYDRYFLHSDEVRYELPQAFFMRVAMGLA 223

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           L E ++E RA+EFY LLSSF FM STPTLFNSGT   QLSSCFLTTV DDL  IF  +  
Sbjct: 224 LNEDDREARAIEFYELLSSFDFMASTPTLFNSGTVRAQLSSCFLTTVGDDLQAIFHGISN 283

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           NAML+KYSGGLGNDWTPVRGLG+HI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVC
Sbjct: 284 NAMLSKYSGGLGNDWTPVRGLGSHIRGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVC 343

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           AYLETWHID+EEFLDLRKNTGD+RRRTHDMNTANW+PDLFM+RV Q   WTLFSPDEV D
Sbjct: 344 AYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFMQRVEQGGSWTLFSPDEVPD 403

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           LHD YG EF  AY +YE +A  G IKV + + AV LWR+MLTMLFETGHPWITFKDP N+
Sbjct: 404 LHDKYGAEFAEAYAHYEAEAAAGRIKVSKTLPAVDLWRRMLTMLFETGHPWITFKDPSNL 463

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGS+NL  H   +  D ++L  T+RTAV
Sbjct: 464 RSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSVNLAQHVGPDGLDAERLRRTVRTAV 523

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +TI +A+++N  HR +GLGLMGFQ AL  L  P+AS  AV  ADESME 
Sbjct: 524 RMLDNVIDVNFYTIPEARRANMRHRPVGLGLMGFQDALFKLRTPFASDGAVSFADESMEL 583

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDE 748
           IS++AI AS+ELA ERG+Y SF+GSLW +GV PIDS+ LLAE R  +L M+R   L WD 
Sbjct: 584 ISYYAIEASMELAAERGSYESFEGSLWSRGVLPIDSLRLLAESRDGDLDMDRGETLDWDS 643

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++RVKT GMRNSN MAIAPTATIANI GVSQSI+P Y+NLYVKSNMSGDFTVVN +LV 
Sbjct: 644 LRERVKTTGMRNSNVMAIAPTATIANITGVSQSIEPVYRNLYVKSNMSGDFTVVNPYLVR 703

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +LK R LWD+ M+S LK HDGS+G I+R+P DLK ++ATAFE+DP WL+++ SRRQKWID
Sbjct: 704 DLKARGLWDDDMVSALKMHDGSLGAIDRVPADLKALYATAFEVDPEWLVDAGSRRQKWID 763

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP- 927
           QAQSLNLY+  PSG+KLD +YR+AW  GLKTTYYLRS+SAT VEKSTLKG DG+LNAV  
Sbjct: 764 QAQSLNLYMAAPSGRKLDSLYRRAWRSGLKTTYYLRSQSATHVEKSTLKGTDGRLNAVAA 823

Query: 928 --------------------------------VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                                     +   +    D ECE CQ
Sbjct: 824 TPAAPVASPAPSPAPAPSPAPSPSPNPQPVTGGAADEDEFEIIDGQACSIDDPECEACQ 882


>gi|134097870|ref|YP_001103531.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007411|ref|ZP_06565384.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910493|emb|CAM00606.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 782

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 515/781 (65%), Positives = 609/781 (77%), Gaps = 3/781 (0%)

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236
           S+  VL E  +N +DG+S  +L  A I ++R ++E EPNY++VTAR LL++LRRE LT +
Sbjct: 2   SADAVLDEVRRNSFDGISADELAIAQIMAARIMVEAEPNYSQVTARLLLDRLRREALTYL 61

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
              P  A   +M+  Y  YF  Y+  GV+   L   +  FDL  L   L  ERD +F +L
Sbjct: 62  AGLPDDADQEQMRERYAPYFRDYVARGVELGQLDPELASFDLDRLGAALLPERDMSFGFL 121

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           GLQ LYDRYFLH +G+R E+PQAFFMRVAMGLAL+E ++E RAVEFY LLSSF FMCSTP
Sbjct: 122 GLQTLYDRYFLHHDGTRYELPQAFFMRVAMGLALREDDREARAVEFYRLLSSFDFMCSTP 181

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGT  PQLSSCFLTTV DDL+GIF ++  NAML+KY+GGLGNDWTPVRG+GAHI G
Sbjct: 182 TLFNSGTTRPQLSSCFLTTVDDDLHGIFHSISNNAMLSKYAGGLGNDWTPVRGIGAHIRG 241

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG+SQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT
Sbjct: 242 TNGQSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 301

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           HDMNTANW+PD FM+RV  +  WTLFSPDE  DLHDLYG  F   Y  YER A+RGEIKV
Sbjct: 302 HDMNTANWVPDEFMRRVEADGTWTLFSPDETPDLHDLYGTAFAERYRAYERAAERGEIKV 361

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +R++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E
Sbjct: 362 YRQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSRDE 421

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            AVCNLGS+NL  H   +  D+++L  T RTAVR+LDNVIDIN +TI +A++SN  HR I
Sbjct: 422 VAVCNLGSVNLARHVTADGIDHERLERTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPI 481

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLGLMGF  AL    IP +S  AVE AD SME IS+HAISAS +LA ERG Y SF+GSLW
Sbjct: 482 GLGLMGFSDALFAQRIPVSSQAAVEFADRSMEEISYHAISASADLAAERGRYESFEGSLW 541

Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
            QGV PIDS+ LL + R   + ++RT    W  L++RV+ +GMRNSN MAIAPTATIANI
Sbjct: 542 SQGVLPIDSLALLEQARDGHVDLDRTMTRDWGALRERVRAVGMRNSNVMAIAPTATIANI 601

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           CGV QSI+P Y+NLYVKSNMSGDFTVVN  LV +LK   LWDE M++DLK+HDGS+  I 
Sbjct: 602 CGVGQSIEPIYRNLYVKSNMSGDFTVVNPHLVADLKAAGLWDEDMLADLKFHDGSLDPIS 661

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           RIP +LK+++ATAFE++P WL+E+A+RRQKWIDQAQSLNLY+  PSG+KLD +YR AW  
Sbjct: 662 RIPGELKELYATAFEVEPRWLVEAAARRQKWIDQAQSLNLYVAAPSGRKLDELYRLAWRQ 721

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT--DPNSSTHSLGIPSSCTSDTECEVC 953
           GLKTTYYLRS SAT VEKSTL+G DGKLNAVP T   P   T ++   +    D +CE C
Sbjct: 722 GLKTTYYLRSTSATHVEKSTLRGTDGKLNAVPTTPVAPVVPTAAVDGAACSVDDPDCEAC 781

Query: 954 Q 954
           Q
Sbjct: 782 Q 782


>gi|269839639|ref|YP_003324331.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791369|gb|ACZ43509.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 819

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/814 (55%), Positives = 586/814 (71%), Gaps = 9/814 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  +G L+  +  R+   ++ AC GL +     + +E  +++YD ++   + +A+I
Sbjct: 12  RVRVVSPEGGLVPLDPDRVRRHLQHACRGLPECDPDELANEVVRSLYDRVTPEQIRSAMI 71

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++R  IE++P Y KV +R +LE++ +E    V       +  E+   Y E F RY+   
Sbjct: 72  LAARARIERDPAYDKVASRLMLEQIYQESWGWV------PSEAELAATYREMFPRYVHAC 125

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           + A  L E +  FDL  LA+ L+ ERD    Y+GLQ LYDRY L + G R+E PQ F+MR
Sbjct: 126 ISAGRLSEELARFDLARLASALRPERDEKLRYIGLQTLYDRYLLDVEGRRLEAPQYFWMR 185

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VAMGLAL+E +   RA +FY+LLSS  F+ +TPTLFNSGT HPQLSSC+L+TV DDL  I
Sbjct: 186 VAMGLALREDDPNARAAQFYDLLSSLRFVSATPTLFNSGTPHPQLSSCYLSTVEDDLEHI 245

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           F  + +NA L+K++GGLGNDWT VR  GA I GT+GKSQGVIPFLK+ NDTAVAVNQGGK
Sbjct: 246 FKVIGDNAKLSKWAGGLGNDWTRVRATGALIRGTHGKSQGVIPFLKIVNDTAVAVNQGGK 305

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGAVC YLE WH+D EEFL+LRKNTGD+RRRTHDM+TA+W+PDLFM+RV +   WTLFS
Sbjct: 306 RKGAVCCYLEPWHLDFEEFLELRKNTGDERRRTHDMHTASWVPDLFMRRVQEGGTWTLFS 365

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+EV DLH+LYG+ FE  Y  YER A+ G+++  +++ A  LWRKML+ML+ETGHPWI F
Sbjct: 366 PNEVPDLHELYGRAFERRYVEYERMAEEGKLRQHKRVDAKMLWRKMLSMLWETGHPWIAF 425

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
           KDP NIRS Q HVGV+HSSNLCTEI L +S EETAVCNLGSINL+ H + +  D  KLA 
Sbjct: 426 KDPSNIRSAQDHVGVIHSSNLCTEILLPTSREETAVCNLGSINLVEHLSGDGLDEAKLAE 485

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+RTAVR+LDNVIDIN +   +A++SN  HR IGLG+MGF  AL  L IPYASP+AVE +
Sbjct: 486 TVRTAVRMLDNVIDINFYPTPEARRSNLRHRPIGLGIMGFHDALLALRIPYASPQAVEFS 545

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTS 742
           D++ME IS+HAI AS ELA ERG Y S++GS W +G+ PID+I LL   R  +L M+RT+
Sbjct: 546 DQTMELISWHAIMASSELAAERGRYPSYQGSKWSRGLLPIDTIELLERERGGDLEMDRTA 605

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           RL W  +++ V   G+RNS  MAIAPTATI+NI GVSQSI+P Y+NL+VKSN+SGDFT+V
Sbjct: 606 RLDWGPVREAVARWGVRNSQIMAIAPTATISNIAGVSQSIEPHYRNLFVKSNLSGDFTIV 665

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +LK+  LW + M+  +KY+DGSI  IE IPD++K ++ TA EIDP+WLIE ASR
Sbjct: 666 NPYLVEDLKRLGLWSQEMLDRIKYYDGSILPIEEIPDEVKHLYLTAHEIDPLWLIECASR 725

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-- 920
           RQKW+D  QSLN+Y+ EPSGKKL  IY  AW  GLKTTYYLR+  AT+VEK+++      
Sbjct: 726 RQKWVDMGQSLNIYVAEPSGKKLHEIYFAAWRKGLKTTYYLRAVGATNVEKASMDINRFG 785

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +   +     +S    +   S+C    +CE CQ
Sbjct: 786 VQPRWMRSRSASSRVRIVREGSTCQLGEDCEACQ 819


>gi|254449375|ref|ZP_05062817.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
           proteobacterium HTCC5015]
 gi|198261021|gb|EDY85324.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma
           proteobacterium HTCC5015]
          Length = 839

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/839 (59%), Positives = 626/839 (74%), Gaps = 55/839 (6%)

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
            GL+DV +  +L++T +N++DG+++ ++ TALI S+RT+IEK+PNY++V+AR LL+ +R 
Sbjct: 1   EGLEDVDADKILNDTLRNVFDGVAKKEVATALIMSARTMIEKDPNYSQVSARLLLDSMRE 60

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E LT +      AT  EMQ  YPEYF  YI   V+  LL   M +FDL  L   L  ERD
Sbjct: 61  EALTFLGDGAPAATQAEMQERYPEYFKHYIARAVELELLDGEMHNFDLERLGQALLPERD 120

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
             F YLGLQ LYDRYF+H + G R E+PQAFFMRVAMGLA+ E ++E+RA+EFY LLSSF
Sbjct: 121 QGFTYLGLQTLYDRYFIHDDSGVRFELPQAFFMRVAMGLAINEVDREERAIEFYTLLSSF 180

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            FM STPTLFNS T  PQLSSC+LTTVPDDL GIF A++++AML+K++GGLGNDWT VR 
Sbjct: 181 DFMSSTPTLFNSATLRPQLSSCYLTTVPDDLDGIFSAVKDDAMLSKFAGGLGNDWTRVRA 240

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLE+WH+D+EEFL+LRKNT
Sbjct: 241 LGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLESWHLDIEEFLELRKNT 300

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           GDDRRRTHDMNTANWIPDLFMKRV ++  WTLFSP++V DLHDL GK+FE AY  YE +A
Sbjct: 301 GDDRRRTHDMNTANWIPDLFMKRVAEDGEWTLFSPNDVDDLHDLVGKKFEKAYTAYEAKA 360

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
           D GEIK+F+++ AV LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEIT
Sbjct: 361 DSGEIKLFKRVKAVDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEIT 420

Query: 590 LNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           LN+S  E AVCNLGS+N+  H     + D  KL  TI+TA+R+LDNVID N +++ +A++
Sbjct: 421 LNTSDMEIAVCNLGSVNMAQHVTEEGELDVAKLERTIKTAMRMLDNVIDYNYYSVPQARR 480

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR +GLG+MGFQ AL+   + Y S EAVE AD +ME +S++AIS+SV+LA+ERGAY
Sbjct: 481 SNIRHRPVGLGIMGFQDALYKKGVAYQSDEAVEFADRAMEAVSYYAISSSVDLAEERGAY 540

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           SSF GSLW +G+ PIDSI +LAE R +   ++R+  + WD L++RV+  GMRNSNCMAIA
Sbjct: 541 SSFPGSLWSRGILPIDSIDILAEHRGDFLQVDRSQTMDWDSLRQRVRESGMRNSNCMAIA 600

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV ELK R+LWD+ M++DLKY+
Sbjct: 601 PTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVKELKARNLWDDVMVNDLKYY 660

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
           DGS+  IERIPDDL++I++TAFEID  WL+E+ SRRQKWIDQ QSLNLY+ EPSGKKLD 
Sbjct: 661 DGSVHPIERIPDDLRQIYSTAFEIDARWLVEAGSRRQKWIDQGQSLNLYMSEPSGKKLDN 720

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV-------------------------DGK 922
           +Y+ AW  GLKTTYYLRS  AT VEK+  +                            G 
Sbjct: 721 LYKLAWARGLKTTYYLRSMGATHVEKTASRPAPGSGGQQGGSSDGTASGQSQEGQAGQGG 780

Query: 923 LNAVPVTDPNSSTH--------------------------SLGIPSSCTSD-TECEVCQ 954
           ++A   T  ++                             +   P +C+ D  +CE CQ
Sbjct: 781 VSASAPTGASAQPPQAQATAPVSATASVSSDAFDNISSETAPEAPQACSIDNPDCEACQ 839


>gi|257055669|ref|YP_003133501.1| ribonucleotide-diphosphate reductase subunit alpha
           [Saccharomonospora viridis DSM 43017]
 gi|256585541|gb|ACU96674.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora viridis DSM 43017]
          Length = 815

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 511/804 (63%), Positives = 620/804 (77%), Gaps = 5/804 (0%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
               +R+  +V EA +GL D S++ VL+E  +N+YDG+   +L  A I ++RTL+E+EPN
Sbjct: 12  PIPWERVHRVVREAVAGLPDTSAEAVLAELKRNVYDGIRADELALAQIMAARTLVEREPN 71

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y+ V AR LL+ LR E  + +  +P++  + EM   Y +YF  Y+  G+  +LL E +  
Sbjct: 72  YSFVAARLLLDLLRGEATSYLADEPRQPDYAEMAAGYADYFRDYLRRGIDLQLLDEELAA 131

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET 333
           FDL  LA  L+ ERD     LGLQ LYDRY L     G R E+PQAFFMRVAMGLA++E 
Sbjct: 132 FDLDILAAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMGLAIREP 191

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           E++ RAVEFY LLS+  FM STPTLFN+GTR PQLSSCFLTTV DDL  IF   + NA+L
Sbjct: 192 ERDTRAVEFYELLSTLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLESIFTGYRNNALL 251

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           AKYSGGLGNDWTPVRGLGAHI GT GKSQGV+PFLK+ANDT VAVNQGGKRKGA CAYLE
Sbjct: 252 AKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGAACAYLE 311

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
           TWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV  +A WTLFSPDEV DLHDL
Sbjct: 312 TWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPDEVPDLHDL 371

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG  F   Y  YE+ AD G+I+VFR++SA  LWR+MLTMLFETGHPWITFKDPCN+RSPQ
Sbjct: 372 YGTAFAERYRAYEKAADAGQIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPCNLRSPQ 431

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           QH GVVHSSNLCTEITLN+S +E AVCNLGS+NL  H   +  D + L  T+RTAVR+LD
Sbjct: 432 QHAGVVHSSNLCTEITLNTSPDEIAVCNLGSVNLARHIGKDGLDVEALRKTVRTAVRMLD 491

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVIDIN +T+ +A++SN  HR +GLGLMGF  AL  L IP AS EAVE AD SME +S+H
Sbjct: 492 NVIDINFYTVPEARRSNLRHRPVGLGLMGFTDALFELGIPQASDEAVEFADRSMEVLSYH 551

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKK 751
           AISASVELA ERGAY SF GSLW +G+ P+DS+ LLAE R   EL ++ +S L WD L++
Sbjct: 552 AISASVELAGERGAYPSFDGSLWSRGILPLDSLRLLAEARGEDELDIDTSSTLDWDALRE 611

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           RV+T+GMRNSN +AIAPTATI+NICGV QSI+P + NL+VKSNMSG+FTVVN +LV +LK
Sbjct: 612 RVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPYLVRDLK 671

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +R LWDE M+ +LK HDG +G IER+P++LKK++ATAFE D  WL+++A+RRQKWIDQAQ
Sbjct: 672 RRGLWDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDAAARRQKWIDQAQ 731

Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           SLNLYL EPSG+ LD +YR AW  GLKTTYYLRSR+AT VEKSTL+G DG+LNAV    P
Sbjct: 732 SLNLYLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLRGTDGRLNAVAPAVP 791

Query: 932 NSSTHSLGIPSSC-TSDTECEVCQ 954
                + G  ++C   D +CE CQ
Sbjct: 792 AVPADASGAAAACRIDDPDCEACQ 815


>gi|284043178|ref|YP_003393518.1| ribonucleoside-diphosphate reductase, subunit alpha [Conexibacter
            woesei DSM 14684]
 gi|283947399|gb|ADB50143.1| ribonucleoside-diphosphate reductase, alpha subunit [Conexibacter
            woesei DSM 14684]
          Length = 1091

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/953 (43%), Positives = 579/953 (60%), Gaps = 37/953 (3%)

Query: 22   FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR---SIRVQDIIKNLTEQ 78
                   +++I+R+G VT+++P+KI  AI KAF++++         + RV +    L   
Sbjct: 156  AARPAGALRLIRRSGHVTAWEPAKIEVAIRKAFLSLQADSEPAVALAARVSERAHAL--- 212

Query: 79   TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
                          V IE +QD V+  L+ +GH +    Y++YR ERS +RA  +     
Sbjct: 213  ----------GMAYVPIETVQDIVQEELVLAGHMRAAERYIVYRAERSLLRAQDAPVPGA 262

Query: 139  --APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSE 195
              +   P + ++  DGT   +  + L   +  A  GL   ++ + +  E  + +  G+  
Sbjct: 263  PGSGAQPPVPVIELDGTESLWGGEDLRARIAFAAIGLDLPLAPEELERELRRAIRPGIKR 322

Query: 196  SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +DL    + +++ L+E++ ++++   R LL  +  E L     +        ++  +   
Sbjct: 323  ADLRRLTVLNAKALVERDSDFSRFAGRILLSHVYEEALAWDIVRDG---VGALKAAHERG 379

Query: 256  FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING---- 311
                +E GV    +  ++ D+D+  LA  L    D  F++LGLQ LYDRY +        
Sbjct: 380  LRALLEHGVAIGRIDPALHDYDVARLAAALDPTADLDFDFLGLQTLYDRYLIVDKKAAEP 439

Query: 312  SRIEMPQAFFMRVAMGLA-----LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             RIE PQ F+MRVAMG+           +E+RA++ Y +     F  STPTLFN+GT H 
Sbjct: 440  RRIETPQLFWMRVAMGVCLTARDGDPAAREERAIDLYTMYKQRRFCSSTPTLFNAGTPHS 499

Query: 367  QLSSCFLTTVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            QLSSC+L  + D L  I    + ENAM +K++GGLG  WT VRG G+HI  TNG+SQGV+
Sbjct: 500  QLSSCYLYKIEDTLSSIVGRGIAENAMCSKWAGGLGGSWTAVRGTGSHIESTNGESQGVV 559

Query: 426  PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            PFLK+ ND  VAVNQGGKR G+ CAYLE WH D+ EFL+LR+NTGD+RRRTHDMNTANWI
Sbjct: 560  PFLKMHNDQLVAVNQGGKRAGSGCAYLEVWHNDIREFLELRRNTGDERRRTHDMNTANWI 619

Query: 486  PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            PDLFMKRV     WTLF  ++V DLH+ YG++FE  YE YE + D GE+   R I A+ L
Sbjct: 620  PDLFMKRVEAREQWTLFRSNDVPDLHETYGRDFEARYEAYEARVDAGELHGER-IPAIEL 678

Query: 546  WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
            W++ML +LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+  +ETAVCNLGS+
Sbjct: 679  WKQMLKLLFETGHPWITFKDPCNVRSPQDHAGVVHSSNLCTEITLNTGPDETAVCNLGSV 738

Query: 606  NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
             +  H     + D+ KL +TIR AVR LD+VID+N +  E A+ +N  HR +GLG+MG Q
Sbjct: 739  VIDQHLDAAGEIDHAKLRATIRVAVRALDDVIDVNFYPTEPARTANGRHRPVGLGVMGLQ 798

Query: 665  SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             AL+   + + SPEA+   DE ME I+F+A  AS +LA ERG Y S+ GS WD+G+ P D
Sbjct: 799  YALYRKGLAFGSPEALAFGDEMMEAIAFYAYEASSDLAAERGTYQSYAGSKWDRGLLPQD 858

Query: 725  SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            ++ LL E R   + + R  R+ W  L+ ++   GMRNSN +AIAPTATIANI G S  I+
Sbjct: 859  TLDLLEEERGQPIEVERGGRMDWTPLRAKIAAQGMRNSNVLAIAPTATIANIMGTSPCIE 918

Query: 784  PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
            P Y+NL+ KSN+SGDFT++N FLV +LK   +W  A+   LK  +G +  +  +P  L+ 
Sbjct: 919  PMYKNLFAKSNLSGDFTILNPFLVRDLKAAGVWSGALAERLKVVEGDLEQVPEVPAALRA 978

Query: 844  IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
            ++ TAF+I+P  LI++A+RRQKWIDQ+QSLNL+L  P  K +  +YR+AW  GLKTTYYL
Sbjct: 979  LYRTAFQIEPERLIDAAARRQKWIDQSQSLNLFLAAPDLKAMSHMYRRAWHAGLKTTYYL 1038

Query: 904  RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--LGIPSSCTSDTECEVCQ 954
            R+  A+++EK+T+              P +           +  +  ECE CQ
Sbjct: 1039 RTLGASAIEKATVAAPAAATVPAAAGMPTAPDAEALACSIEAMRNGEECEACQ 1091



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 101 QVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSK 160
            VE +L+ +GH+++ +  VL R      R + S     A  A  L+++   G + ++   
Sbjct: 124 LVEAALIDAGHYELAKALVLRRA-----RPSASGDDVAARPAGALRLIRRSGHVTAWEPA 178

Query: 161 RLEMIVEEACSGLQDVSSKIVLSET 185
           ++E+ + +A   LQ  S   V    
Sbjct: 179 KIEVAIRKAFLSLQADSEPAVALAA 203


>gi|326797772|ref|YP_004315591.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sphingobacterium sp. 21]
 gi|326548536|gb|ADZ76921.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sphingobacterium sp. 21]
          Length = 792

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/815 (36%), Positives = 454/815 (55%), Gaps = 31/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+ C GL    V    V  +  + +YDG++ S+L+   
Sbjct: 1   MYVIKRDGRSESVKFDKITARIEKLCYGLNPDLVDPIDVARKVIEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +  + +  +         M  LY     +  + 
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNTVKSFSET--------MSLLYHYIDPKTGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  + + L + + Y+RDF+F+Y G + L   Y L +NG   E PQ  FM
Sbjct: 113 APLIADDVYEVIQANAMELDSHIIYDRDFSFDYFGFKTLEKSYLLKLNGKIAERPQHLFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+        +  ++ Y+LLS   F  +TPTLFN+GT  PQ+SSCFL T+ DD + 
Sbjct: 173 RVAVGIH---KHDIESVIKTYDLLSERWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     VR  GA+I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGAYISGTNGTSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV +F+DLRKN G +  R  D+  A W+PDLFMKRV +N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADVYDFIDLRKNHGKEELRARDLFLALWVPDLFMKRVEENGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSPDE   L + +G+ FE  YE YER     E +  + + A  LW  +L    ETG P+
Sbjct: 350 LFSPDEAPGLAECHGEAFEKLYEQYER-----EGRARKIVKAQDLWFAILDAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S QQ++G + SSNLCTEI   +S++E AVCNL S+ L  +  N +FD+ K
Sbjct: 405 LLYKDAANGKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYVDNGEFDHQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L          L+ +ID N + +++A+ SN  HR +GLG+ G      L+ +P+ S  A 
Sbjct: 465 LFDITYQVTINLNRIIDNNYYPVDEARNSNLRHRPVGLGVQGLADTFILMRMPFESEAAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I F A++AS +LA + G Y SFKGS   QG F  D   +  +         
Sbjct: 525 QLNKDIFETIYFAAMTASKDLAVKEGPYESFKGSPLSQGKFQFDLWNVKPD--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W+ L+K +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 576 SGRWDWEGLRKEIKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  L+ +L +  LW+  M + +   +GSI +I  IP D+K+++ T +EI    +I+ A
Sbjct: 636 IVNKHLLRDLVELGLWNNEMKNRIIAANGSIQDINEIPADIKELYKTVWEIKMRNIIDMA 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++AT   K T++  
Sbjct: 696 ADRGAFICQSQSLNLFVNTPTTAKLTSMHFYAWKKGLKTGMYYLRTQAATQAVKFTVENQ 755

Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            GK +  V      S    +   + C+ +  C  C
Sbjct: 756 AGKNMEPVIPAKIESVPDDIPTGAVCSMEEGCITC 790


>gi|149279600|ref|ZP_01885729.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
 gi|149229636|gb|EDM35026.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
          Length = 792

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/815 (35%), Positives = 439/815 (53%), Gaps = 31/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C G     V    V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVIEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +           K+    M+ LY     +  + 
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNT--------TKSFSKTMEMLYKYVDSKTDKS 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF F+Y G + L   Y L I G  +E PQ  FM
Sbjct: 113 ASLIADDVWEVIQENADILDSTIIYDRDFGFDYFGFKTLEKSYLLKIEGQIVERPQHLFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+          A++ YNL+S   F  +TPTLFN+ T  PQ+SSCFL T+ DD + 
Sbjct: 173 RVAVGIH---KSDIDSAIKTYNLMSERWFTHATPTLFNAATPKPQMSSCFLLTMQDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV  FLDLRKN G +  R  D+  A W+ DLFMKRV  N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADVFSFLDLRKNHGKEELRARDLFYALWVCDLFMKRVEANEDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G EFE  YE YE+     E +  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPHEAPGLADCFGDEFEALYERYEK-----EGRARKTVKAQELWFAILDSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S QQ++G + SSNLCTEI   +S +E AVCNL S+ L     N +FD+ K
Sbjct: 405 LLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVINGEFDHQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      A   L+ +ID N + +E+AK SN  HR +GLG+ G   A  L+ +P+ S  A 
Sbjct: 465 LYDVTYQATLNLNKIIDYNYYPVEEAKNSNMRHRPVGLGVQGLADAFILMRLPFESDGAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  E  E I F A++AS +LA   G Y +FKGS   QG F  D   +  +         
Sbjct: 525 LLNKEIFETIYFAAMTASHDLAVVNGPYQTFKGSPLSQGKFQFDLWNVTPD--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W+ L+++V   G+ NS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 576 SGRWDWESLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFI 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L    LW  AM   +   +GSI +I  IPD +K+++ T +EI    +I+ A
Sbjct: 636 VVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSIIDMA 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++A+   K T++  
Sbjct: 696 ADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTVENQ 755

Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            GK +  V     +     +     C+ +  C  C
Sbjct: 756 AGKNMEPVIPDHIDQPVEEITDGPVCSMEEGCISC 790


>gi|312130871|ref|YP_003998211.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311907417|gb|ADQ17858.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 820

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/843 (34%), Positives = 447/843 (53%), Gaps = 59/843 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E  C GL    V    V  +    +YDG++ S+L+T  
Sbjct: 1   MFVVKRDGRRESVKFDKITARIERLCYGLDPYFVQPVEVAMKVVAGIYDGVTTSELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L +  L +            M+ LY     +  E 
Sbjct: 61  AETAASMTTKHPDYAILAARVAISNLHKNTLKSFSGT--------MKLLYQYVDPKTGEN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF +++ G + L   Y + +NG  +E PQ   M
Sbjct: 113 AALISKETWKIIQANAALLDSSIIYDRDFGYDFFGYKTLEKSYLMKLNGKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E  ++A+E YNLLS   F  +TPTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIHG---ENIEKAIETYNLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     VR  G++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH D+ EFL+L+KN G +  R  D+  A W PDLFMKRV  NA W+
Sbjct: 290 GGKRKGSFAIYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANADWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D YG++FE  Y  YE      E K  + I A  LW ++L    ETG P+
Sbjct: 350 LFCPHECPGLADTYGEDFERLYTKYEA-----EGKARKTIPAQELWFQILESQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQF 616
           + +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L            F
Sbjct: 405 MLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVNTEGPAPSF 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL    +   R L+ +IDIN + + +A+ SN  HR IGLG+ G   A  L+  P+ S
Sbjct: 465 DFQKLYEVTKVVTRNLNRIIDINYYPVPEAENSNKRHRPIGLGIQGLADAFILMRFPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++  +  E + F A+  S+ELA+E G YSSF+GS   +G+F  D   +  +     
Sbjct: 525 EEAQKLNRDVFETLYFAAMETSMELAKEEGPYSSFEGSPISKGIFQFDMWDVTPD----- 579

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    W++L+K+V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +S
Sbjct: 580 ----SGLWDWEDLRKKVMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLS 635

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L +  LW++ M + L   +GS+  I  IP+DLK ++ TA+EI    +
Sbjct: 636 GEFVVVNKHLLRDLVKIGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAWEIKQKSI 695

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ ++ R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YYLR+++A    K T
Sbjct: 696 IDMSADRGAYICQSQSLNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAAADAVKFT 755

Query: 916 LKGVDGKLNAVPVTD-------------------------PNSSTHSLGIPSSCTSDTEC 950
           +        +                                       +  S  +   C
Sbjct: 756 VDRQAIAETSPVTETIQEKPLDYKGYAKEQAEKAAASFQMTEEEQKYAAMQCSLDNPEGC 815

Query: 951 EVC 953
           E+C
Sbjct: 816 EMC 818


>gi|312889902|ref|ZP_07749446.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
 gi|311297434|gb|EFQ74559.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
          Length = 792

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/815 (35%), Positives = 445/815 (54%), Gaps = 31/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C GL    V    V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGKKETVKFDKITARIEKLCYGLNPSLVDPIDVSKKVVEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +           K+    M+ LY     +  + 
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNT--------IKSFSETMRNLYLYTDKKTGKN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      ++ +   L + + Y+RDF F+Y G + L   Y L I+G   E PQ  FM
Sbjct: 113 ASLIADDVWQAIEANAELLDSTIIYDRDFGFDYFGFKTLEKSYLLKIDGKIAERPQHLFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E     ++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL T+ DD + 
Sbjct: 173 RVSVGIH---KEDIDSVIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLLTMQDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     VR  G++I GTNG S G+IP LKV NDTA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIIPMLKVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WI DLFM+RV ++  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWICDLFMQRVEEDGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   LH+ +GKEFE  Y  YE      E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFCPHEAPGLHECWGKEFEALYTKYEA-----EGRARKTIRAQELWFAILDAQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S QQ++G + SSNLCTEI   +S++E AVCNL S+ L  +     FD+ K
Sbjct: 405 LLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYITAGVFDHQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L          L+ +ID N + + +A  SN  HR IGLG+ G       L +P+ S EA 
Sbjct: 465 LYEVTYQVTLNLNKIIDHNYYPVVEASNSNFRHRPIGLGVQGLADTFIRLRLPFESDEAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  E  E I F A++AS +LA + G Y +FKGS   QG F  D   +  +         
Sbjct: 525 KLNKEIFETIYFAAMTASKDLAIQDGPYETFKGSPLSQGKFQFDLWNVTPD--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W++L+  V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 576 SGRWNWEDLRSDVMNHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +L+++L +  LW+  M + +   +GS+ +I  IP ++K+++ T +EI    +I+ A
Sbjct: 636 VVNKYLLHDLVELGLWNNDMKNQIISANGSVQDIPEIPAEIKELYKTVWEIKMRTIIDMA 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  ++ Q+QSLNL++  P+  KL  ++  AW  GLKT  YYLR+++A+   K T++  
Sbjct: 696 ADRGAYVCQSQSLNLFISSPNASKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTIESQ 755

Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            GK +  V   +  +    +     C+ +  C  C
Sbjct: 756 GGKSMEPVIPENGVAVVDEIPDGPVCSMEEGCVTC 790


>gi|255530603|ref|YP_003090975.1| ribonucleoside-diphosphate reductase subunit alpha [Pedobacter
           heparinus DSM 2366]
 gi|255343587|gb|ACU02913.1| ribonucleoside-diphosphate reductase, alpha subunit [Pedobacter
           heparinus DSM 2366]
          Length = 792

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/815 (35%), Positives = 444/815 (54%), Gaps = 31/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C G     V    V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVIEGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +    +  K         M+ LY     +  + 
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNTTKSFSKT--------MEMLYNYVDSKTEKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     +++ +   L + + Y+RDF F+Y G + L   Y L ++G  +E PQ  FM
Sbjct: 113 ASLIADDVWEVIEKNADILDSTIIYDRDFGFDYFGFKTLEKSYLLKVDGQIVERPQHLFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+          A+E YNL+S   F  +TPTLFN+ T  PQ+SSCFL T+ DD + 
Sbjct: 173 RVAVGIH---KGDIDSAIETYNLMSERWFTHATPTLFNAATPKPQMSSCFLLTMQDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV  FLDLRKN G +  R  D+  A W+ DLFM+RV +N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADVLSFLDLRKNHGKEELRARDLFYALWVCDLFMRRVEENGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G+EF+  YE YE+     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFCPHEAPGLADCFGEEFDALYERYEQ-----EGRARKTIKAQELWFAILDSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S QQ++G + SSNLCTEI   +S +E AVCNL S+ L     N +FD+ K
Sbjct: 405 LLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVINGEFDHQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      A   L+ +ID N + +E+A+ SN  HR +GLG+ G   A  L+ +P+ S  A 
Sbjct: 465 LYDVTYQATVNLNKIIDYNYYPVEEARNSNMRHRPVGLGVQGLADAFILMRLPFESEGAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  E  E I F A++AS +LA + G Y +FKGS   QG F  D   +  +         
Sbjct: 525 ILNKEIFETIYFAAMTASHDLAVKNGPYETFKGSPLSQGKFQFDLWKVQPD--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W+ L+++V   G+ NS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 576 SGRWDWETLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFI 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L    LW  AM   +   +GSI +I  IPD +K+++ T +EI    +I+ A
Sbjct: 636 VVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSIIDMA 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR+++A+   K T++  
Sbjct: 696 ADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTVENQ 755

Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            GK +  V       S   +     C+ +  C  C
Sbjct: 756 AGKNMEPVIPEHIEQSAEEIVEGPVCSMEEGCISC 790


>gi|289677033|ref|ZP_06497923.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae FF5]
          Length = 762

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/754 (56%), Positives = 542/754 (71%), Gaps = 5/754 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW
Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543
           IPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A 
Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG
Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MGF
Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+
Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725

Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKT 755
           DS  +L E R    ++++    L W  ++ RV+ 
Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK 759


>gi|110636873|ref|YP_677080.1| ribonucleoside diphosphate reductase subunit alpha [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279554|gb|ABG57740.1| ribonucleoside diphosphate reductase, alpha subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 794

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/817 (36%), Positives = 452/817 (55%), Gaps = 33/817 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E  C GL    V    V       +YDG++  +L+   
Sbjct: 1   MLVLKRDGRRESVKFDKITSRIERLCYGLDMNYVDPTSVAKRVIDGLYDGVTTEELDHLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L ++          K+  + M+ LY     +  E 
Sbjct: 61  AETAASMTTKHPDYATLAARIAVSNLHKKT--------SKSFANTMKRLYTYVDPKTGEN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +  +   L + + Y+RD+ ++Y G + L   Y L ++G  +E PQ   M
Sbjct: 113 ASMISNEVYEFIRKNAAILDSAIIYDRDYGYDYFGFKTLEKSYLLKVDGKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV+ G+   +      A+E YNL+S   F  +TPTLFNSGT  PQLSSCFL T  DD + 
Sbjct: 173 RVSCGIHSGD---IDAAIETYNLMSERWFTHATPTLFNSGTPKPQLSSCFLLTTQDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYETLKQCAKISQSAGGIGLSIHNIRATGSYIKGTNGTSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV EFLDLRKN G +  R  D+  A WI DLFMKRV +N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D YGK+FE  YE YE+     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFCPHEAPGLADCYGKDFEALYEKYEK-----EGRARKTIKAQELWFAILEAQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S Q+++G + SSNLCTEI   +S EE AVCNL S+ L     N +FD+ K
Sbjct: 405 MLYKDAANRKSNQKNLGTIKSSNLCTEIMEFTSPEEVAVCNLASLALPKFVINGKFDHQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      A + L+ +ID+N + + +A++SN  HR IGLG+ G   A  LL +P+ S EA 
Sbjct: 465 LYDVTYVATKNLNKIIDVNYYPVPEAERSNKRHRPIGLGVQGLADAFILLRMPFESDEAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A++AS +LA++ G Y +FKGS   +G+F  D  G+            
Sbjct: 525 QLNIDIHETIYYAAMTASKDLAEKLGPYETFKGSPVSKGIFQFDMWGVTPA--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W+ LK+ VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 576 SGRYDWEALKREVKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L + +LWD+ M + L   +GS+ NI  IP ++K ++ TA+EI    LI+ +
Sbjct: 636 VVNKHLLKDLIKLNLWDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAWEIKGKTLIDMS 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLN+++ E +  KL  ++  AW  GLKT  YYLR++SA +  + T++  
Sbjct: 696 ADRGAYICQSQSLNIFMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSAANAIQFTVEKQ 755

Query: 920 DGKLNAVPVTDP---NSSTHSLGIPSSCTSDTECEVC 953
                A   TD    ++   +  +  S  +   CE C
Sbjct: 756 AEVQLAPGTTDQSIVDAEKKAKDMACSLDNPEGCESC 792


>gi|196012349|ref|XP_002116037.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
 gi|190581360|gb|EDV21437.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
          Length = 780

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/815 (35%), Positives = 438/815 (53%), Gaps = 43/815 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   V + C  L    V    +  +    +Y+G++  +L+T  
Sbjct: 1   MYVVKRDGRKEKVMFDKITSRVSKLCYNLNNDHVDPAAITMKVIAGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + ++    P+YA + AR  +  L +E   T            M  LY     +  + 
Sbjct: 61  AEIAASMTTNHPDYALLAARIAVSNLHKETKKTFSVV--------MDELYNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RD+ + + G + L   Y L I+    E PQ   M
Sbjct: 113 SPMISKETHEIITKHCERLNSAIIYDRDYNYNFFGFKTLERSYLLKIDKKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVSVGIHG---EDIDGAIETYNLMSERWFTHASPTLFNAGTCRPQLSSCFLLTMSDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGLSVHCIRSSGSYIAGTNGHSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +FLDL+KNTG + +R  D+  A W+PDLFMKRV +N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHPDIFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENGVWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P++   LHD YG+EFE  Y  YE        K  R++ A  LW  +L    ETG P+
Sbjct: 350 LMCPNDCPGLHDTYGEEFEKLYTEYEDA-----GKFIRQVRAQKLWFAILEAQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619
           + +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SI L      ++ FD+ 
Sbjct: 405 MLYKDACNRKSNQKNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPRFVRPDKTFDFH 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +   R L+ +IDIN + + +A+KSN  HR IG+G+ G   A  L+  P+  PEA
Sbjct: 465 KLAEVTKVITRNLNKIIDINFYPVPEAEKSNKRHRPIGIGVQGLADAFILMRFPFDGPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I + A+ AS ELA+E G Y +++GS   QG    D               
Sbjct: 525 RDLNIKIFESIYYGALQASCELAKEVGPYETYEGSPASQGQLQFDLW----------EKQ 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W+ LK+ +K  G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 575 PTDLWNWNSLKEDIKKYGLRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L    +W++ M ++L  ++GSI  I  IPDD+K ++ T +EI    LI+ 
Sbjct: 635 QVVNQHLLKDLTDMGVWNDMMKNELIANNGSIQKINNIPDDIKALYKTVWEISQRTLIDM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QS N+++ EP+  KL  ++  AW  GLKT  YYLR++ A S  + T+  
Sbjct: 695 AADRGAYIDQSQSFNVHIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAASAIQFTVDK 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              + +               +  S  +   C +C
Sbjct: 755 EKLQKDR-----------ESAMVCSLENKEACLMC 778


>gi|124003381|ref|ZP_01688231.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
 gi|123991479|gb|EAY30910.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
          Length = 808

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/831 (36%), Positives = 456/831 (54%), Gaps = 47/831 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  DG   S    ++   +E+    L    V    V  +    +YDG++  +L+   
Sbjct: 1   MQVIKRDGRRESVRFDKITARIEKLSYSLARDYVQPVEVAKKVITGIYDGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +           K     M+ LY     +  E+
Sbjct: 61  AETAATMAIKHPDYAILAARIAISNLHKTT--------SKVFSKTMKELYEYIDPKTGEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    + +  +   L + + Y+RD+ ++Y G + L   Y L ++G  +E PQ   M
Sbjct: 113 AGLISDETHAAIQKNAAVLDSSIIYDRDYNYDYFGFKTLERSYLLKMDGQVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E   + +E Y LLS   F  +TPTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIHG---EDVDKVLETYELLSGKWFTHATPTLFNAGTPKPQLSSCFLLTMQDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     VR  G++I GTNG S GVIP LKV NDTA  V+QG
Sbjct: 230 GIYDTLKQCAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGVIPMLKVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDL+KN G +  R  D+  A W+ DLFMKRV  +  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLKKNHGKEELRARDLFYAMWLSDLFMKRVENDDTWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   LH++YG+EFE  YE YE      E +  + I A  LW K+L    ETG P+
Sbjct: 350 LFCPNEAPGLHEVYGEEFEKLYEQYE-----LEGRARKVIKAQDLWFKILESQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     + +FD+ K
Sbjct: 405 MLYKDAANEKSNQKNLGTIKSSNLCTEIMEYTSKDEVAVCNLASIALPKFVIDGKFDHQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ +IDIN + +++A+ SN  HR IG+G+ G      +L +P+ S EA 
Sbjct: 465 LYEVTQVVTRNLNRIIDINYYPVKEAENSNLRHRPIGIGVQGLADTFMMLRMPFDSEEAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E I F +++AS+ELAQ+ GAY S+KGS   +G+F  D  G+  E         
Sbjct: 525 GLNKDIFETIYFASMTASMELAQKEGAYESYKGSPVSEGIFQFDMWGVKPE--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W  L+K VK  G RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 576 SGRWDWQALRKDVKKHGARNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+N+L + +LW   M + +K  +GS+ NI  IP +LK I+ T +EI    +++ A
Sbjct: 636 VVNKHLLNDLVELNLWGGDMENRIKAANGSVQNIPEIPQNLKDIYKTVWEIKQKDVVDMA 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG- 918
           + R  +I Q+QSLN++++ P+  KL  ++  AW  GLKT TYYLR+++A    + T++  
Sbjct: 696 ADRGAFICQSQSLNIHMENPTFGKLTSMHFYAWKKGLKTGTYYLRTKAAAKAIQFTVEKK 755

Query: 919 ----VDGKLNAVPV------------TDPNSSTHSLGIPSSCTSDTECEVC 953
                 GK+N                    S  +++   +    D +C+ C
Sbjct: 756 YQEESKGKINGQADLVATTASASAHQNGSVSEEYNVEGQNCSIDDPDCDSC 806


>gi|213512716|ref|NP_001133985.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|209156060|gb|ACI34262.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|223648756|gb|ACN11136.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
          Length = 792

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/816 (34%), Positives = 441/816 (54%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGREERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K P+YA + AR  +  L +E         +K     ++ LY          
Sbjct: 61  AEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVVEDLYNYVNPLNRCH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + ++RDF++ + G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKETLDIVLENKDRLNSAIIFDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+           +E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIHQ---TDIDAVIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDL+KNTG + +R  D+    WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAMYLEPWHFDVFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P +   L + +G+EFE  Y  YE+     E +V R + A  +W  ++    ETG P+
Sbjct: 350 LMCPSDCPGLDECWGEEFEKLYTRYEQ-----EGRVKRVVKAQQVWHAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G + SSNLCTEI   +S +E AVCNL SI L  +      FD+ 
Sbjct: 405 MLYKDACNRKSNQQNLGTIKSSNLCTEIVEYTSHDEVAVCNLASIALNMYVTPERTFDFS 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAYVTKVIVRNLNKIIEINYYPVVEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I + A+ +S ELA E GAY ++ GS   +G+   +               
Sbjct: 525 QKLNTQIFETIYYAALESSCELAAELGAYETYPGSPVSKGILQYNMWDKTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+ +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWTLLKENIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + L   +GSI  I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWEISQKTILKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL  
Sbjct: 695 AADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNK 754

Query: 919 VDGKLNAVPVT-DPNSSTHSLGIPSSCTSDTECEVC 953
              K +      +     +   +  S  +  +C +C
Sbjct: 755 EKLKESQSAKNLEALKELNRAAMVCSLENRDDCLMC 790


>gi|260789736|ref|XP_002589901.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
 gi|229275086|gb|EEN45912.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
          Length = 787

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/815 (34%), Positives = 446/815 (54%), Gaps = 36/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +  ++   +++ C GL    V    +  +    +Y G++  +L+T  
Sbjct: 1   MYVLKRDGRQEKVHFDKITSRIQKLCYGLNMDFVDPTKITMKVINGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +E         +KA    M+ LY     +  + 
Sbjct: 61  AETAATMTVKHPDYATLAARIAISNLHKET--------KKAFTDVMEDLYNWVNPKTNQH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF + Y G++ L   Y L I+G   E PQ   M
Sbjct: 113 SPMISKKLMDLVTKNADRLNSAIIYDRDFKYTYFGIKTLERSYLLRIDGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVALGIHY---EDLDAAIETYNLMSEKKFTHASPTLFNAGTNKPQLSSCFLLTMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYETLKQCALISKSAGGIGVNIHKIRASGSFIAGTNGTSNGLLPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLD RKNTG + +R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAMYLEPWHADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEENGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D +G+EFE  YE YE+       K  R + A  +W  ++    ETG+P+
Sbjct: 350 LMCPHECPGLEDCWGEEFEKLYEGYEKA-----GKGRRTVKAQQVWYAIIEAQTETGNPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI +  +   +  +D++
Sbjct: 405 MLYKDACNSKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIAVNMYVKPDGTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL        R L+ +ID+N + + +A+ SN  HR IG+G+ G      L+  P+ S EA
Sbjct: 465 KLKEVTVVITRNLNKIIDVNYYPVPEAENSNKKHRPIGIGVQGLADCFILMRYPFESEEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS E+A+E G Y +++G    +G+F  D   +           
Sbjct: 525 QHLNKQIFETIYYGAMQASCEIAKELGPYETYEGCPVSKGIFQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK++VK  G+RNS  +A  PTA+ A I G ++SI+    N+Y +  +SG+F
Sbjct: 576 -TDLWDWAALKEQVKQHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +  LW+E M + +  ++GS+ NIE IP+ ++ ++ T +EI    +I+ 
Sbjct: 635 QVVNHHLMTDLTELGLWNEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWEISQKTVIKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+R A++  + T+  
Sbjct: 695 AADRGAFIDQSQSLNIHIGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPASNPIQFTVDK 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     T          +  S  +  EC +C
Sbjct: 755 SK----LAQSTKAEKEKQLEAMVCSLENKDECLMC 785


>gi|255037023|ref|YP_003087644.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter
           fermentans DSM 18053]
 gi|254949779|gb|ACT94479.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter
           fermentans DSM 18053]
          Length = 814

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/837 (34%), Positives = 452/837 (54%), Gaps = 53/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+   GL    V    V  +    +YDG++ ++L+   
Sbjct: 1   MYVIKRDGRRESVKFDKVTARIEKLSYGLDATYVQPVEVAKKVVSGIYDGVTTAELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L +  L        K+    M+ LY     +  E 
Sbjct: 61  AETAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSATMKRLYTYIDSKTGEN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RD++++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 ASLISREVYEVIRQNASLLDSTIIYDRDYSYDYFGYKTLEKSYLLKVEGKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  + A+E Y+LLS   F  +TPTLFN+GT  PQ+SSCFL T+  D + 
Sbjct: 173 RVAIGIHQ---EDVQAAIETYHLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKEDSIN 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A++++ +GG+G     VR  G +I GTNG+S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKNCALISQSAGGIGLSIHDVRATGTYIKGTNGQSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   Y+E WH D+ +FLDL+KN G + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GGKRKGSFAIYIEPWHSDIFDFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVEANDTWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D + +EFE  YE YER     E +  + I A  LW  ++    ETG P+
Sbjct: 350 LFCPHECPGLADTHSEEFEKLYEQYER-----EGRARKTIKAQDLWFAIMESQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + +KD  N +S QQ++G + SSNLCTEI   ++ +E AVCNL SI L             
Sbjct: 405 MLYKDHANSKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVEQGADGFMH 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    +   R L+ +ID+N + + +A+KSN  HR IG+G+ G   A  ++ +P+ 
Sbjct: 465 FDHQKLYEITKVVTRNLNKIIDLNFYPVPEAEKSNKRHRPIGIGVQGLADAFCMMRMPFD 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I + ++ AS+ELA + G Y ++ GS   QGVF  D   +  E +  
Sbjct: 525 SDEARRLNKDIFETIYYGSMEASMELAMQNGPYETWAGSPISQGVFQFDMWNVTPESK-- 582

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                  R  W++L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 583 -------RWNWEKLRKEVVQNGVRNSLLLAPMPTASTSQILGNNECFEPFTSNIYVRRVL 635

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +L+ +L +  LW E M ++L    GS+  I  IP ++K ++ TA+EI    
Sbjct: 636 SGEFVVVNKYLLKDLVRLGLWSEEMKNNLVRASGSVQAIPNIPQNIKDLYKTAWEIKQRS 695

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           L++ ++ R  +I Q+QSLN++++E +  KL  ++  AW  GLKT  YYLR+R+A+   + 
Sbjct: 696 LLDMSADRGAYICQSQSLNIFMEEANFGKLTSMHFYAWKKGLKTGMYYLRTRAASDPVQF 755

Query: 915 TLKG-------------VDGKLNAVPVTDPNSSTHS-----LGIPSSCTSDTECEVC 953
           T+                + +LN V   + ++   +       +  S      CE C
Sbjct: 756 TVSKQAEPQLEPATAVVAEKELNYVQYAEEHAKPAAPRDNRSDMQCSLDDPEGCEAC 812


>gi|298243908|ref|ZP_06967715.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
           racemifer DSM 44963]
 gi|297556962|gb|EFH90826.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter
           racemifer DSM 44963]
          Length = 846

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/825 (55%), Positives = 584/825 (70%), Gaps = 24/825 (2%)

Query: 152 GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
           G     +S+ +  I+EE C G   +V+   +        Y G+S+++L  ALI ++RT I
Sbjct: 24  GATSPSDSQAVLRILEEVCQGFGPEVNVDQLFQSVNATTYAGISDAELWQALIMATRTNI 83

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E EP Y  V AR LL  L  E L+T   +  +   ++   +Y  Y   Y+E GV    L 
Sbjct: 84  EFEPAYTFVAARLLLISLYNEALST--TQATRVGLNDAASIYKNYLSDYVEFGVSKGYLD 141

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
               ++DL+ LA+ +  ERD  F Y GLQILYDRYFL  N  R E+PQ  +MRVAMGLA 
Sbjct: 142 PRFQEYDLIELASAIHPERDQLFAYQGLQILYDRYFLQDNNRRFELPQLLWMRVAMGLAF 201

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            E  KE RA+EFY LLS F+F  +TPTLFN+GT HPQLSSC+LTTV DDL+ IF  +Q+N
Sbjct: 202 NEEHKEARAIEFYELLSQFYFTSATPTLFNAGTTHPQLSSCYLTTVDDDLFHIFKCIQDN 261

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A+L+K++GGLGNDWT VR LGAHI GTNG SQG+IPFLKV NDTAVAVNQGGKRKGAVCA
Sbjct: 262 ALLSKWAGGLGNDWTRVRALGAHIKGTNGISQGIIPFLKVVNDTAVAVNQGGKRKGAVCA 321

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           Y+E WH+D+EEFLDLRKNTGDDRRRTHDM+TA WI DLFMKRV +N  WTLFSPD VSDL
Sbjct: 322 YIENWHLDIEEFLDLRKNTGDDRRRTHDMHTACWISDLFMKRVERNEQWTLFSPDVVSDL 381

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           HDLYGK FE  YE YER  + G+I  +R++SA+ LWRKMLT LFETGHPWITFKDP N+R
Sbjct: 382 HDLYGKAFEQRYEEYERMVEAGQITHYRRVSALDLWRKMLTRLFETGHPWITFKDPSNVR 441

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQ H GVVHSSNLCTEI LN+S++ETAVCNLGSINL AH  + + ++++L  T+RTAVR
Sbjct: 442 SPQDHAGVVHSSNLCTEILLNTSNDETAVCNLGSINLAAHIIDGKLNHERLQKTVRTAVR 501

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVIDIN +  ++A+ +N  HR +GLGLM FQ AL+ L + YAS  A+E AD SME I
Sbjct: 502 MLDNVIDINYYPTDEARNANLRHRPVGLGLMAFQDALYKLGVSYASEAAIEFADRSMEAI 561

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           S++AI AS ELA E G Y S++GS WD+G+ PIDSI +L E R  ++ M+R+  L WD++
Sbjct: 562 SYYAILASSELATEHGTYGSYQGSKWDRGILPIDSIAILEEERGQKIDMDRSMTLDWDKV 621

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +  VK  GMRNSN MAIAPTATI++I GVSQSI+PSY+NLYVKSN+SG+FT++NSFLV++
Sbjct: 622 RTAVKQNGMRNSNVMAIAPTATISSIVGVSQSIEPSYKNLYVKSNLSGEFTIINSFLVDD 681

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK+ ++WD   +  LKY+DGS+  +  +P+++++ + TAF+I+P WLI  ASRRQKWID 
Sbjct: 682 LKRLEIWDRNTLEALKYYDGSLQEMTFLPEEIRQRYLTAFDIEPRWLIACASRRQKWIDM 741

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK------------ 917
            QS++LYL  PSGKKL  +Y+ AW  GLKTTYYLR+ +AT VEKST+             
Sbjct: 742 GQSIDLYLYNPSGKKLSDVYQLAWNSGLKTTYYLRTLAATQVEKSTVDINRFGIQPRWMK 801

Query: 918 --------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                    V+ +  A             G  + C    +CE CQ
Sbjct: 802 NSSPSSNIQVERENQAQQPKPTPIPLELSGEGAVCNLGDDCEACQ 846


>gi|256072094|ref|XP_002572372.1| ribonucleoside-diphosphate reductase alpha subunit [Schistosoma
           mansoni]
 gi|238657529|emb|CAZ28603.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Schistosoma mansoni]
          Length = 837

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/853 (33%), Positives = 453/853 (53%), Gaps = 52/853 (6%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMY 190
                +     K+ ++  DG   + + +++   +   C GL +  +  + V       +Y
Sbjct: 5   QKLLREFSGIDKIYVVKRDGRNEAIHCEKITKRIRAMCYGLNESYIDVEAVTKRVVSGLY 64

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            G++  +L+     +  ++I K   YA + AR  +  L +E  +      +         
Sbjct: 65  PGVTTVELDNLAAETCASMITKHHEYAILAARLAVSNLHKETKSRFSDVVE--------D 116

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           LY     R  +            +  +   L + + Y+RD+ + Y G + L   Y L IN
Sbjct: 117 LYCYINPRTKKHSPLVSKSLRDFVRENAGRLNDAIDYQRDYTYNYFGFKTLERSYLLKIN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G   E PQ   MRV++G+    T     A+E YNL+S   F  ++PTLFN+GT  PQLSS
Sbjct: 177 GKVHERPQHMLMRVSIGIH---TSDIDSAIETYNLMSEKWFTHASPTLFNAGTPKPQLSS 233

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL T+ DD + GI+  L+E A+++K +GG+G +   +R LG +I GTNG+S G++P L+
Sbjct: 234 CFLITMKDDSIEGIYDTLKECAVISKNAGGIGLNVHNIRSLGTYIAGTNGESNGIVPMLR 293

Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           V N TA  V+QG  KR GA   YLE WH DV +F+++RKNTG +  R  D+  A WIPDL
Sbjct: 294 VFNSTARYVDQGGNKRPGAFAMYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDL 353

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  N  WTL  P E   L +++G++F+  YE YER     E +  + + A  LW  
Sbjct: 354 FMRRVESNDKWTLMDPHECPGLPEVWGEDFDTLYEKYER-----EGRGRQTVKAQELWYA 408

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++    ETG+P++ +KD CN +S  QH+G +  SNLCTEI   SS +ETAVCNL SI+L 
Sbjct: 409 IIECQIETGNPFMLYKDSCNRKSNHQHLGTIRCSNLCTEIVEYSSPDETAVCNLASISLG 468

Query: 609 AHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                +   FD+ KL    +   R L+ VID+  + +E+A++SN  HR IG+G+ G   A
Sbjct: 469 KFVNRDNLTFDFAKLQEVTKVVTRNLNKVIDVTFYPVEEARRSNMRHRPIGIGVQGLADA 528

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
             LL  P+ SPEA ++     E + F ++ AS +LA ++G Y S++GS   +G+   D  
Sbjct: 529 FCLLRYPFDSPEAADLNKRIFETMYFASLDASCQLAVDQGTYESYQGSPVSKGILQPDMW 588

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           G+  E      +++ S L W  L+ R+   G+RNS  +A  PTA+ + I G ++S +P  
Sbjct: 589 GVDTEE-----LSKVSGLDWSGLRARINKYGLRNSLLLAPMPTASTSQILGNNESTEPFT 643

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N++ +  +SG+F +VN +L+++L + +LW E + + +  + GSI +I+ IP +LK ++ 
Sbjct: 644 SNVFSRRVLSGEFQIVNPYLLDDLTKLELWSEELKTAIVLNQGSIQHIDGIPKELKPLYK 703

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T +EI    +I+ A+ R  +IDQ+QSLNL+L +P+  K+  ++  AW  GLKT  YYLR+
Sbjct: 704 TVWEISQKKIIDMAAGRAPFIDQSQSLNLHLAQPNYGKITSMHFYAWRKGLKTGMYYLRT 763

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS------------------------LGIP 941
           R A    K ++     ++     T  N   ++                          I 
Sbjct: 764 RPAADPIKFSVDKTILRVLTDSTTKTNEPQNNDSIDQTVEAIEELRIIEEIQKRNLDSIA 823

Query: 942 SSCTSDTECEVCQ 954
            S  +   C  CQ
Sbjct: 824 CSLNNPEGCLSCQ 836


>gi|256421018|ref|YP_003121671.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
           pinensis DSM 2588]
 gi|256035926|gb|ACU59470.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
           pinensis DSM 2588]
          Length = 802

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/826 (35%), Positives = 446/826 (53%), Gaps = 43/826 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   VE+ C GL  + V +  V  +  + +YDG++ S+L+   
Sbjct: 1   MFVIKRDGHKEAVKFDKITARVEKLCYGLNAEYVDAIDVAKKVIQGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L  K P+YA + +R  +  L +  + +  K         M+ LY     +  + 
Sbjct: 61  AETAASLTTKHPDYALLASRIAVSNLHKNTVKSFSKT--------MENLYNYIDPKVGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDFAF+Y G + L   Y L ++G   E PQ  FM
Sbjct: 113 APLLADDVYEIVMKHAAILDSSIIYDRDFAFDYFGFKTLERSYLLKLDGKVAERPQHMFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E     ++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL T+ DD + 
Sbjct: 173 RVSVGIH---KEDIDAVIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNIRATGSYISGTNGTSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV +N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRRVEENGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   LH+ +G+EFE  Y  YE+     E +  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPHEAPGLHECWGEEFEKLYTKYEK-----ENRARKTVKAQDLWFAVLDAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S QQ++G + SSNLCTEI   + + E AVCNL S+ L     + QFD++K
Sbjct: 405 LLYKDSANRKSNQQNLGTIKSSNLCTEIIEYTDANEVAVCNLASLALPRFVIDGQFDHEK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      A   L+ +ID N + +++A+ SN  HR IGLG+ G   A  L+  P+ S EA 
Sbjct: 465 LYEVTYQAALNLNRIIDNNFYPVDEARNSNLRHRPIGLGVQGLADAFILMRYPFESEEAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  E  E I F A++AS +LA + GAY ++ GS   +G+   D  G+    R       
Sbjct: 525 KLNSEIFETIYFAALNASKDLAIKDGAYETYAGSPVSKGILQFDMWGVTPSPR------- 577

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 578 ---WDWTSLKGEIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L +  LWD  M + +   +GSI +I  IP  +K+++ T +EI    +I+ A
Sbjct: 635 VVNKHLLKDLVELGLWDNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWEIKQRTIIDMA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL++D PS  KL  ++  AW  GLKT  YYLR+++A    + T++  
Sbjct: 695 ADRGAFICQSQSLNLFVDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAAQAVQFTVEKQ 754

Query: 920 DGKLNA------------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            G+                   D           + CT +  C  C
Sbjct: 755 GGQQMEPMVEKKAGEAKAAKAVDTKLDEVEFVEGAVCTMEEGCVTC 800


>gi|237798940|ref|ZP_04587401.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806193|ref|ZP_04592897.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021794|gb|EGI01851.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027306|gb|EGI07361.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 748

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/752 (61%), Positives = 566/752 (75%), Gaps = 22/752 (2%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           AR L++ LR E L         ATHHEM  LY +    Y+  G+K  LL+  + +FDL  
Sbjct: 1   ARLLMDTLRAEGLG-FLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEK 59

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L   + +ERD  F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+
Sbjct: 60  LGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAI 119

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EFYNLLSSF +M STPTLFN+GT  PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGL
Sbjct: 120 EFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGL 179

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           GNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+E
Sbjct: 180 GNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIE 239

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+ 
Sbjct: 240 EFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQE 299

Query: 521 AYENYERQ-ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
            YE YE      G++K+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVV
Sbjct: 300 RYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVV 359

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           HSSNLCTEITLN++ +E AVCNLGSINL  H  N + D DKL  T+  AVR+LDNVIDIN
Sbjct: 360 HSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDIN 419

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +++ +AK SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS 
Sbjct: 420 YYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASC 479

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIG 757
           +LA ERGAY +F+GSLW +G+ P+DS  +L E R    ++++    L W  ++ RV+  G
Sbjct: 480 DLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-G 538

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD
Sbjct: 539 IRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWD 598

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             MI+DLKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+
Sbjct: 599 SVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYI 658

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
              SGKKLD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          +
Sbjct: 659 AGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSA 716

Query: 938 LGIPS---------------SCTSDTECEVCQ 954
           +  P                    + +CE CQ
Sbjct: 717 ITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 748


>gi|242014390|ref|XP_002427874.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
 gi|212512343|gb|EEB15136.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
          Length = 795

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/818 (34%), Positives = 443/818 (54%), Gaps = 33/818 (4%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200
            K+ ++   G     +  ++   +++ C GL    V    +  +    +Y G++ ++L++
Sbjct: 2   NKMFVIKRGGRNEEVHFDKITSRIQKLCYGLNLDYVDPIAITVKVINGLYSGVTTAELDS 61

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
                S ++  + P+YA + AR  +  L +E   +            M  LY        
Sbjct: 62  LAAEVSASMTTQHPDYAILAARIAVSNLHKETKVSFSDV--------MTDLYNMKNSFNQ 113

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +        H  ++      L   + YERD+ + Y G + L   Y L ING  +E PQ  
Sbjct: 114 QPTPMLSDYHYDIIIKHADELNAAIIYERDYNYNYFGFKTLERSYLLKINGKVVERPQHM 173

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRVA+GL   +      A+E YNLLS  +F  ++PTLF++ TR PQLSSCFL T+  D 
Sbjct: 174 LMRVAVGLHGDDIS---SAIETYNLLSEKYFTHASPTLFSAATRKPQLSSCFLLTMKEDS 230

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+
Sbjct: 231 IDGIYETLKQCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARYVD 290

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA   YLE WH D+ EFLDL+KNTG +  R  D+  A WIPDLFM+RV QN  
Sbjct: 291 QGGNKRPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQE 350

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L  P     L D +G+EF   Y +YE      +    +K+ A +LW  ++    ETG 
Sbjct: 351 WCLMCPKTCPGLSDCWGEEFNKLYLSYEE-----KGLYVKKVKAQSLWYAIIESQVETGT 405

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FD 617
           P++ +KD CN +S QQ++G +  SNLCTEI   SS EE AVCNL SI +      ++ ++
Sbjct: 406 PYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEIAVCNLASIAVNMFVKPDKTYN 465

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++KL    +   + L+ VIDI  + + +AK SN  HR IG+G+ G   A  L+ +P+ SP
Sbjct: 466 FEKLKDVTKIITKNLNKVIDITYYPVPEAKLSNLRHRPIGIGIQGLADAFILMRLPFDSP 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA   G Y +++GS   +G+   D  G+         
Sbjct: 526 EAQKLNIQIFETIYYGALEASSELAAIHGPYETYEGSPASKGILQYDMWGVTP------- 578

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T+   WD LK ++K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 579 ---TNLWDWDALKNKIKKWGIRNSLLIAPMPTASTAQILGNNESFEPYTTNIYTRRVLSG 635

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L +  LW++ M + +  + GSI NI+ IP +LK ++ T +EI    ++
Sbjct: 636 EFQVVNQHLLKDLTEIGLWNDEMKNTIIANGGSIQNIDSIPKELKALYKTVWEISQKVIL 695

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN+++ +P+  KL  ++  AW +GLKT  YYLR++ A    + T+
Sbjct: 696 KMAADRGAFIDQSQSLNIHIAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAAQPIQFTV 755

Query: 917 KGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   N   V+      +   I  S  +  +C +C
Sbjct: 756 DKTKVNNANVKEVSTEKDKFNMESISCSLQNKDDCLMC 793


>gi|311748426|ref|ZP_07722211.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
 gi|126576939|gb|EAZ81187.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
          Length = 799

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/822 (35%), Positives = 452/822 (54%), Gaps = 38/822 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E  C  L    +    V  +    +YDG++ S+L+   
Sbjct: 1   MLVIKRDGRRESVRFDKITARIENLCYELDPKFIQPIEVAKKVIDGLYDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                +L  K P+YA + AR  +  L +           ++  + M+ LY     +    
Sbjct: 61  AEVCASLTVKHPDYAILAARIAISNLHKTT--------SQSFSNTMKRLYTYINPKTGGN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L   + Y+RDF ++Y G + L   Y + ++G  +E PQ   M
Sbjct: 113 ASLIDPEVYGVVKKNAAKLDAIIDYKRDFGYDYFGYKTLERSYLIRLDGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E    AVE Y+LLS   F  +TPTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIH---KEDIDAAVETYHLLSEKWFTHATPTLFNAGTPKPQLSSCFLLTMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+  + TA  V+QG
Sbjct: 230 GIYDTLKQCAKISQSAGGIGLSIHHVRAKGSYIKGTNGVSNGIVPMLRNFDMTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH DV++FLDL++N G +  R  D+  A WI DLFMKRV QN  W+
Sbjct: 290 GGKRKGSFAIYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKRVEQNETWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D YG+EFE  YE YE+     E +    + A  LW ++L    ETG P+
Sbjct: 350 LFCPNEAPGLSDCYGEEFERLYEKYEK-----EGRARETVKAQELWFEILESQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           + +KD  N +S QQ++G + SSNLCTEI   ++ +E AVCNL S+ L             
Sbjct: 405 MLYKDAANKKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPKFVRTGPDGKLF 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    + A R L+ VID+N + +++A++SN  HR IGLG+ G   A  +L +P+ 
Sbjct: 465 FDHQKLYEITKVATRNLNKVIDVNYYPVDEARRSNFRHRPIGLGVQGLADAFIMLRMPFE 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  + ++  E I + A+  S+ELA+  G Y +++GS   +G+   D  G+  +    
Sbjct: 525 SAEAKGLNEDIFETIYYAAVETSMELAKVEGTYETYEGSPASKGILQFDMWGVTPK---- 580

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                + R  W ELK++VK +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 581 -----SERWNWTELKEKVKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRRTL 635

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L +  LWD+ M + L   +GS+ ++  +P ++K ++ T +EI    
Sbjct: 636 SGEFIVVNKHLMKDLIRLGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKTVWEISQKV 695

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +I Q+QS+N++L +P+  KL  ++  AW  GLKT  YYLRS++A S  K 
Sbjct: 696 IIDLAADRGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAASAIKF 755

Query: 915 TLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTE-CEVC 953
           TL     + K++     + ++ +      S    D + CE+C
Sbjct: 756 TLDKSNLEPKVDKAMQEEIDAKSLKQDAISCSLDDPDGCEMC 797


>gi|327403796|ref|YP_004344634.1| ribonucleoside-diphosphate reductase subunit alpha [Fluviicola
           taffensis DSM 16823]
 gi|327319304|gb|AEA43796.1| ribonucleoside-diphosphate reductase, alpha subunit [Fluviicola
           taffensis DSM 16823]
          Length = 789

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/814 (35%), Positives = 438/814 (53%), Gaps = 32/814 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG   +    ++   + + C GL   VS + V  +  + +YDG++ + L+    
Sbjct: 1   MYVLKRDGRKEAVKFDKITARIIKMCYGLDPLVSPEAVAMKVIEGIYDGVTTTVLDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             +       P+YA + +R  +  L +E   +  +         M+ LY     +  +  
Sbjct: 61  EVAAAKTIDHPDYALLASRIAVSNLHKETKKSFSEV--------MEDLYKYVDPKTGQRA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y+RDF ++Y G + L   Y L   G   E PQ   MR
Sbjct: 113 SLIADDVYEVIQNNSELLDSSIIYDRDFRYDYFGFKTLTRSYLLRTKGEIAERPQQMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           VA+G+   +     +A++ YNL+S   F  +TPTLFN+GT  PQ+SSCFL T+ DD + G
Sbjct: 173 VAVGIHKND---LPQAIKTYNLMSEGWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIEG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L+  A +++ +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYETLKSCAQISQSAGGIGLAIHNIRATGSYIKGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH DV +FLDL+KNTG +  R  D+  A WIPDLFMKRV +N  WTL
Sbjct: 290 GKRKGSFAMYIEPWHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVEENGDWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   L D +G EFE  Y  YE      E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPHECPGLSDTFGAEFEALYTQYE-----TEGKGRKTIKAQDLWFKVLESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDK 620
            +KD  N +S QQ++GV+ SSNLCTEI   ++ +E AVCNL S+ L  +   + +FD+DK
Sbjct: 405 LYKDAANAKSNQQNLGVIKSSNLCTEIIEYTAPDEIAVCNLASLALPKYVTEDGKFDHDK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      A   L+ +ID N + +E+A+KSN  HR IGLG+ G      +L  P+ S EA 
Sbjct: 465 LFEVTYQATVNLNRIIDGNFYPVEEARKSNMRHRPIGLGVQGLADTFIMLRYPFESEEAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  E  E I + A++AS +LA   G Y ++ GS   +GVF  D  G+            
Sbjct: 525 ALNREIFETIYYAAMTASKDLAMAEGPYETYAGSPVSKGVFQYDMWGVTP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           TSR  WD LK+ V   G+RNS  +A  PTA+ A I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 TSRWEWDLLKEEVAKYGVRNSLLVAPMPTASTAQILGNNECFEPYTSNIYTRRVLSGEFI 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  L+ +L +  LW + M   L   +GS+ NI  IP  +K ++ TA+EI    +IE A
Sbjct: 635 IVNKHLLKDLVKEGLWTKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWEISQKAIIEQA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLN++++  +  KL  ++   W  GLKT  YYLR+++AT   K T+   
Sbjct: 695 ADRGAYICQSQSLNIFMENANFGKLTSMHFYGWKKGLKTGMYYLRTKAATDAIKFTVDKA 754

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +     ++          I  S  +   CE+C
Sbjct: 755 VTE-EPAAISAAELEEQQAAIACSLDNPDNCEMC 787


>gi|269302770|gb|ACZ32870.1| ribonucleoside-diphosphate reductase, alpha subunit, truncated
           [Chlamydophila pneumoniae LPCoLN]
          Length = 815

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/815 (53%), Positives = 564/815 (69%), Gaps = 14/815 (1%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205
           +  +DGT        LE     AC        S+++    + N+Y G+ E ++ TA I +
Sbjct: 8   VQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMA 67

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R  IE+EP+YA + A  L   L  E L    + P       +  ++ ++F  YI  G +
Sbjct: 68  ARANIEREPDYAFIAAELLTSSLYEETLGCNSQDP------NLSEIHKKHFKEYILNG-E 120

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              L+  + D+DL  L+  L   RD  F Y+G+Q LYDRYF    G R+E  Q F+MRV+
Sbjct: 121 EYRLNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVS 180

Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           MGLAL E  +K   A+ FYNLLS+F +  +TPTLFNSG RH QLSSC+L+TV DDL  I+
Sbjct: 181 MGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIY 240

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             + +NA+L+K++GG+GNDWT VR  GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKR
Sbjct: 241 KVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKR 300

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ +   WTLFSP
Sbjct: 301 KGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSP 360

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           D+V  LH+ YG EFE  YE YER+ + GEI++++K+ A  LWRKML+ML+ETGHPWITFK
Sbjct: 361 DDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFK 420

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DP NIRS Q HVGVV  SNLCTEI LN S  ETAVCNLGSINL+ H  N + D +KL  T
Sbjct: 421 DPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKET 480

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I  A+R+LDNVID+N +   +AK++N THRA+GLG+MGFQ  L+ L+I YAS EAVE +D
Sbjct: 481 ISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSD 540

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTS 742
           E  E I+++AI AS  LA+ERG Y+S+ GS WD+G  P+D+I LL E R E    ++ +S
Sbjct: 541 ECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSS 600

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           +  W  ++  ++  GMRNS  MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ 
Sbjct: 601 KKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIP 660

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N++L+ +LK+  LWD  M+ DLKY DGS+  IERIP+ LKK+  TAFEI+P W+IE  SR
Sbjct: 661 NTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSR 720

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           RQKWID   SLNLYL EP GKKL  +Y  AW  GLKTTYYLRS++ATSVEKS +      
Sbjct: 721 RQKWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRG 780

Query: 923 LNAVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954
           +    + + ++ST           C+ +  CE CQ
Sbjct: 781 IQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 815


>gi|163753570|ref|ZP_02160693.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
 gi|161325784|gb|EDP97110.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
          Length = 812

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/833 (34%), Positives = 445/833 (53%), Gaps = 47/833 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V     + +YDG++ S+L+    
Sbjct: 1   MFVVKRDGRKEPMMFDKITSRVRKLCYGLNNLVDPVKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YA++ AR  +  L +          +K+    M  LY     R  ++ 
Sbjct: 61  EIAATMTTTHPDYARLAARISVSNLHKNT--------KKSFSETMVDLYEYVNPRTGKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                   +++  +   L + + Y RDF ++Y G + L   Y L +NG   E PQ   MR
Sbjct: 113 PLLSDEVYNVIMENADRLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +      A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + G
Sbjct: 173 VSVGIHLND---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLRVYNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WIPDLFMKRV +N  WTL
Sbjct: 290 GKRKGSFAIYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEENGPWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  +L +++ +EFE  Y  YE      E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPNLFNVHSEEFEALYLKYEA-----EGKGRKTIKARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L       +FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKGGEFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   + L+ VID N + +++A+ SN  HR IGLG+ G       L +P+ S EA +
Sbjct: 465 FRVTKRVTKNLNKVIDRNYYPVKEAENSNFRHRPIGLGVQGLADTFIKLRMPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+E+A+  G Y +++GS   +G F  +  G+  E         +
Sbjct: 525 LNQEIFETLYFAAVTASMEMAKIEGPYQTYEGSPMSKGEFQHNLWGIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W +L+K+V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWGKLRKQVAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LW E +  +L   +GSI +I+ IP D+K ++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVNLGLWTEDLKQELMRANGSIQHIDEIPQDIKDLYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K T+K   
Sbjct: 698 HRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWRSGLKTGMYYLRTKSAVDAIKFTVKKAK 757

Query: 921 G-------------------KLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVC 953
                               K   V V           I  +    D +C +C
Sbjct: 758 KSIAVPAEAAAGISVQTTGSKPAPVAVEPLTPEEMKEMIARAKDGQDDDCLMC 810


>gi|326435406|gb|EGD80976.1| Rrm1 protein [Salpingoeca sp. ATCC 50818]
          Length = 779

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/814 (36%), Positives = 434/814 (53%), Gaps = 42/814 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   V +   GL  + V +  +       +Y G++  +L+   
Sbjct: 1   MYVVKRDGRKEKVLFDKITSRVSKLSYGLNTEHVDAVEITKRVISGVYTGVTTVELDQLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +   K P+YA + AR  +  L +                 +  L+          
Sbjct: 61  AETAASFTTKHPDYAILAARIAVSNLHKMTHKQFSDV--------IDALHHYVNPETGRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +  +     + + +ERDF F + G + L   Y L +NG   E PQ  FM
Sbjct: 113 APLISKETYEQVMANKEVYNSHIIFERDFNFNFFGFKTLERSYLLKMNGKVAERPQHMFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E    A+E YN +S   F  ++PTLFNSGT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAIGMHG---EDVDAAIETYNYMSEGFFTHASPTLFNSGTPIPQLSSCFLLTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLSVHNIRASGSYIAGTNGHSNGLVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A W+PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAVYLEPWHADIFDFLELKKNTGVEEQRARDLFFALWVPDLFMKRVEANEEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D YG EFE  YE YE      E K  +K+SA  LW  +L    ETG P+
Sbjct: 350 LMCPHECPGLSDTYGDEFERLYEKYEA-----EGKGRKKVSASKLWFAILDAQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S Q+++G +HSSNLCTEI   SS +E AVCNLGSI L     +  FDY K
Sbjct: 405 MLYKDACNKKSNQKNLGTIHSSNLCTEIIEYSSPDEVAVCNLGSIALNKFVGDKTFDYKK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ +IDIN + + +A+KSN  HR IG+G+ G   A  L+ +P+ S EA 
Sbjct: 465 LHEVTKVLTRNLNKIIDINYYPVPEARKSNMRHRPIGIGVQGLADAFILMRLPFDSDEAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+  +  E I   A+ AS E+A   G Y +F+GS   +G+   D             +  
Sbjct: 525 EVNRKIFETIYHGALEASTEIASVEGPYETFEGSPTSEGILQFDMW----------DVKP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W+ L++RVK  G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F 
Sbjct: 575 TDLWDWESLRERVKKDGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L +  LW + +   +  ++GSI  IE IPDD+K ++ T +E+    LI+ A
Sbjct: 635 VVNKHLLKDLVEMGLWSDEVKDQIILNNGSIQKIEGIPDDIKALYKTVWELSQRTLIDMA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS N+++ +P+  KL  ++  AW  GLKT  YYLRSR+AT+  + T+   
Sbjct: 695 ADRGAFIDQSQSFNVHISDPNFGKLTSMHFYAWKRGLKTGMYYLRSRAATNAIQFTVDAK 754

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +                 +  S  +  EC +C
Sbjct: 755 KAR-----------EAKEAAMMCSIDNRDECVMC 777


>gi|284041187|ref|YP_003391117.1| ribonucleoside-diphosphate reductase subunit alpha [Spirosoma
           linguale DSM 74]
 gi|283820480|gb|ADB42318.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirosoma
           linguale DSM 74]
          Length = 826

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/849 (34%), Positives = 450/849 (53%), Gaps = 65/849 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+ C GL    V    V  +    +YDG+  ++L+   
Sbjct: 1   MFVVKRDGRRESVKFDKITARIEKLCYGLDPAYVQPVEVAVKVVSGLYDGVKTTELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA + AR  +  L +E   +     +K   +E          +  E 
Sbjct: 61  AETAASMTTKHPDYAILAARIAISNLHKETNKSFSGTIKKLYQYED--------PKTGEN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RD+ ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 ASLISKEVYDVVRQHAALLDSTIIYDRDYGYDYFGYKTLEKSYLLKLDGRIAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E  + A+E YNLLS   F  +TPTLFN+GT  PQ+SSCFL T+ DD + 
Sbjct: 173 RVAVGIHQ---EDIESAIETYNLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     VR  G +I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGTYIKGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH D+ +FLDL+KN+G +  R  D+  A W PDLFMKRV  +  W+
Sbjct: 290 GGKRKGSFAIYLEPWHADIFDFLDLKKNSGKEEGRARDLFYALWTPDLFMKRVEDDDVWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D YG EFE  Y  YER     E +  R I A  LW K+L    ETG P+
Sbjct: 350 LFCPHECPGLADCYGDEFEELYTRYER-----EGRARRTIKAQELWFKILESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L            +
Sbjct: 405 MLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEIAVCNLASIALPKFITRGTDGIMR 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    +TA R L+ +IDIN + +E+A++SN  HR IGLG+ G   A  +L +P+ 
Sbjct: 465 FDHQKLYEVTKTATRNLNKIIDINYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPFE 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  + ++  E I F A+++S+E A+E G Y ++KGS   QG+F  D  G+  +    
Sbjct: 525 SEEARRLNEDIFETIYFGAMTSSMEQAKEFGPYETWKGSPISQGIFQFDMWGVKPK---- 580

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                ++R  W+ L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 581 -----SNRWDWESLRKDVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVL 635

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L +  LW++AM ++L   +GSI  I  IP ++K ++ T +EI    
Sbjct: 636 SGEFVVVNKHLLKDLVKLGLWNDAMKNNLILANGSIQAIPNIPQNIKDLYKTVWEIKQKH 695

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +I Q+QSLN+++ + +  KL  ++  AW  GLKT  YYLR+++A    K 
Sbjct: 696 IIDMAADRGAYICQSQSLNIHIQDSNFGKLTSMHFYAWKAGLKTGMYYLRTKAAADAVKF 755

Query: 915 TLKGVDGKLNAVPVTDPNSSTHS------------------------------LGIPSSC 944
           T+     +    PV     +                                   +  S 
Sbjct: 756 TVVQPQAEPQLEPVMAEAVTVEKPLDYVQYAKEHAQNATPQPVPMVTDLEQQYAAMTCSL 815

Query: 945 TSDTECEVC 953
                CE+C
Sbjct: 816 DDPEGCEMC 824


>gi|325286575|ref|YP_004262365.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga
           lytica DSM 7489]
 gi|324322029|gb|ADY29494.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           lytica DSM 7489]
          Length = 825

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/807 (35%), Positives = 447/807 (55%), Gaps = 27/807 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGRKELIMFDKITARVRKLCYGLNALVDPLKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +    +  +         M+ LY     R  ++ 
Sbjct: 61  EIAATMTTTHPDYAKLAARISVSNLHKNTKKSFSEV--------MKDLYEYVNPRTGKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RDF ++Y G + L   Y L +NG   E PQ   MR
Sbjct: 113 PLLSDEVFKVIQDNSEKLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +      A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + G
Sbjct: 173 VSIGIHLND---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S GV+P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGVVPMLRVYNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ EFLDL+KN G +  R  D+  A WIPDLFM+RV  NA WTL
Sbjct: 290 GKRKGSFAVYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANADWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  DL+  + KEFE AY  +E      E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPDLYKKHDKEFEEAYLAFEA-----EGKGRKTIKARDLWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L     N +FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKNGEFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   R L+ VID N + + +A+ SN  HR IGLG+ G   A  ++ +P+ S EA +
Sbjct: 465 FRVTKRVTRNLNTVIDRNYYPVVEAENSNMRHRPIGLGVQGLADAFIMMRMPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + + A++AS+E+A+E G YSS++GS   +G F  +  G+  +         +
Sbjct: 525 LNQEIFETLYYAAVTASMEMAKEDGPYSSYEGSPISKGDFQHNLWGIKDDEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W++L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWEKLRKSVLKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L Q  LW+E++  +L   +GSI +I+ IP+D+K+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVQLGLWNESLKQELMRANGSIQHIDIIPEDIKELYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K T+    
Sbjct: 698 HRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVDNSK 757

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            K   V              P +  ++
Sbjct: 758 KKEKPVVEAPEPKLAAVSAAPKATATE 784


>gi|296479831|gb|DAA21946.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
          Length = 791

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/815 (35%), Positives = 456/815 (55%), Gaps = 32/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE YE+     E +V + I A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYEK-----EGRVRKVIKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W+ LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789


>gi|156408425|ref|XP_001641857.1| predicted protein [Nematostella vectensis]
 gi|156228997|gb|EDO49794.1| predicted protein [Nematostella vectensis]
          Length = 810

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/832 (34%), Positives = 450/832 (54%), Gaps = 41/832 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLS 194
           +       L ++  +G        ++   + + C GL++  V    +  +    +Y G+ 
Sbjct: 3   NQDTYNDDLYVLKRNGDSERVYLDKITSRISKLCYGLKNEFVKPINITMKVISGIYQGVK 62

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            ++L+T    ++ ++  K P+YA + AR  +  L +E         +K     M+ LY  
Sbjct: 63  TTELDTLAAETAASMTTKHPDYAILAARIEVSNLHKET--------KKVFSEVMEELYNY 114

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
              +  +           ++      L + + Y+RD+ + Y G + L   Y L ING   
Sbjct: 115 VNPKNNKHSPLISKETLDIIQKHADRLNSAIIYDRDYQYNYFGFKTLMRSYLLKINGKVA 174

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRV++G+     E    A+E YNL+S   F  ++PTLFN+GT  PQ+SSCFL 
Sbjct: 175 ERPQHMLMRVSVGIHG---EDIDAAIETYNLMSEKWFTHASPTLFNAGTNRPQMSSCFLL 231

Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+ DD + GI+G L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V + 
Sbjct: 232 TMSDDSIEGIYGTLRTCALISKNAGGIGVNVHCIRAAGSYIAGTNGHSNGLVPMLRVYDS 291

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QG  KR GA   YLE WH D+ EFLDL+KNTG + +R  D+  A WIPDLFMKR
Sbjct: 292 TARYVDQGGNKRPGAFAIYLEPWHADILEFLDLKKNTGKEEQRARDLFYALWIPDLFMKR 351

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  W+L  P++   L D YG++FE  YE YE Q      K  R+I A  LW  +L  
Sbjct: 352 VEADGMWSLMCPNQCPGLQDCYGEKFEKLYEKYESQ-----GKYMRQIKAQKLWFAILES 406

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-- 610
             ETG P++ +KD CN +S Q+++G +  SNLCTEI   S+ +E AVCNL SI L     
Sbjct: 407 QTETGTPYMLYKDACNSKSNQKNLGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNRFVN 466

Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              +  +F++ KL    +   + L+ +ID+N + + +A+KSN  HR IG+G+ G   A  
Sbjct: 467 VDKSPPEFNFQKLFEVTQVVTKNLNKIIDVNYYPVPEARKSNFRHRPIGIGVQGLADAFI 526

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L+  P+ S +A E+     E I + A++AS +LA   G Y +++GS   QG+   D   +
Sbjct: 527 LMRYPFESQKAQELNKLIFETIYYGAVTASCDLAATNGPYETYEGSPASQGLLQYDLWNV 586

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                       ++   W+ LKK+VK  G+RNS  +A  PTA+ A I G ++SI+P   N
Sbjct: 587 TP----------SNLWDWEALKKKVKEHGLRNSLLIAPMPTASTAQILGNNESIEPYTSN 636

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F +VN  L+ +L +  LW++ M + L  ++GSI +I+ IP DLK ++ T 
Sbjct: 637 IYSRRVLSGEFQIVNHHLLKDLTEMGLWNDGMKNQLIANNGSIQDIKEIPADLKALYKTV 696

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    LI+ A+ R  +IDQ+QS N+++ +P+  KL  ++   W  GLKT  YYLRSR 
Sbjct: 697 WEIKQRVLIDMAADRGAFIDQSQSFNVFIAQPTFSKLTSMHFYGWKKGLKTGMYYLRSRP 756

Query: 908 ATSVEKSTLKGV----DGKLNAVPVTDPNSSTHSLGIPSSC--TSDTECEVC 953
           A +  + T+           ++ P ++           ++C   +   C +C
Sbjct: 757 AVNAIQFTVDQTALAKKKASDSSPTSNEEKPKKDEDAAAACRRDNPDGCLMC 808


>gi|71895081|ref|NP_001026008.1| ribonucleoside-diphosphate reductase large subunit [Gallus gallus]
 gi|53127690|emb|CAG31174.1| hypothetical protein RCJMB04_2p9 [Gallus gallus]
          Length = 790

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/815 (35%), Positives = 456/815 (55%), Gaps = 33/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M  LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMDDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L IN    E PQ   M
Sbjct: 113 SPMISKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +      A+E YNLLS   F  ++PTLFN+GT  P+LSSCFL  + DD + 
Sbjct: 173 RVAVGIHKND---IDAAIETYNLLSERWFTHASPTLFNAGTNRPRLSSCFLLCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V R + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRRVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A++SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS ELA+++G Y +++GS   +G+   D   +           
Sbjct: 525 QRLNQQIFETIYYGALEASCELAEQQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    W  LK+++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -SDLWDWKALKEKIAKYGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +R LW+E M + +  H+GSI NI  IP DLK+++ T +EI    +++ 
Sbjct: 635 QVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL  
Sbjct: 695 AADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNK 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              +      ++     +   +  S  +  EC +C
Sbjct: 755 EKLR-EREKASEEEKERNKAAMVCSLENRDECMMC 788


>gi|320167592|gb|EFW44491.1| ribonucleotide reductase M1 subunit [Capsaspora owczarzaki ATCC
           30864]
          Length = 785

 Score =  712 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/815 (34%), Positives = 438/815 (53%), Gaps = 38/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V + C GL    V +  +  +    +Y G++  +L+T  
Sbjct: 1   MFVKKRDGRTEKVMFDKITSRVNKLCYGLNSDYVDAVEITQKVINGVYPGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  K P+YA + AR  +  L +E                M+ LY     +  + 
Sbjct: 61  AETAAYLTTKHPDYAILAARIAVSNLHKETKKQFSSV--------MRDLYEYQNPKTGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ++G   E PQ   M
Sbjct: 113 APLLADDVYEIIQRNADILDSAVIYDRDFSYSYFGFKTLERSYLLKLHGKIAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E     +E YNL+S   F  ++PTLFNSGT HPQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIH---KENIDLVLETYNLMSEKWFTHASPTLFNSGTPHPQLSSCFLLTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N TA  V+QG
Sbjct: 230 GIYETLKTCAMISKTAGGIGLNVHCIRASGSYIAGTNGHSNGLVPMLRVFNTTARYVDQG 289

Query: 442 GKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G R+ GA   YLE WH DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNRRPGAFAMYLEPWHADVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVEADGNWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L + YG +FE  Y  YER     E K  + I A  LW  +L    E+G P+
Sbjct: 350 LMCPHECPGLEETYGDKFEELYTRYER-----EGKARKVIKAQKLWFAILESQTESGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           + +KD CNI+S Q+++G +  SNLCTEI   SS +E AVCNL S++L      +  +D+ 
Sbjct: 405 MLYKDACNIKSNQKNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLSLPMFVRSDRTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   + L+ +IDIN + + +A+KSN  HR IGLG+ G   A   + +P+ S +A
Sbjct: 465 KLHEITQVVTKNLNRIIDINYYPVPEAEKSNMRHRPIGLGVQGLADAFIQMRVPFDSEDA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  E  E I   A++ASVE+A++ G Y ++ GS   QG+   D  G+           
Sbjct: 525 KKLNREIFETIYHAALTASVEMAKKSGPYETYAGSPVSQGILQHDMWGVKE--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    WD L+ ++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 TSGLWDWDALRAQIAQHGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 635

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+++L +  LW++ M + +    GSI  IE IP  ++ ++ T +E+    LI+ 
Sbjct: 636 QIVNQHLLHDLMELGLWNDRMKNKIISQGGSIAGIEEIPAHIRALYKTVWELSQKTLIDM 695

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QS N+++ EP+  KL  ++  AW  GLKT  YYLR+R A +  + T+  
Sbjct: 696 AADRGAYIDQSQSFNVHIAEPNFGKLTSMHFYAWKRGLKTGMYYLRTRPAANAIQFTVDQ 755

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                    +  P        +  S  +   C +C
Sbjct: 756 K-------ALAAPQKVDEEAAMVCSLQNKEACLMC 783


>gi|291384376|ref|XP_002708776.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
           [Oryctolagus cuniculus]
          Length = 792

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYSYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G +  SNLCTE+   +S +E AVCNL S+ L  +    + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTPEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++G    +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGCPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKASKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|164519000|ref|NP_001106767.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
 gi|158455067|gb|AAI09487.2| RRM1 protein [Bos taurus]
          Length = 791

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/815 (35%), Positives = 455/815 (55%), Gaps = 32/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE YE+     E +V + I A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYEK-----EGRVRKVIKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W+ LK+++   G+RNS  +A  PTA+   I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTVQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789


>gi|31982026|ref|NP_033129.2| ribonucleoside-diphosphate reductase large subunit [Mus musculus]
 gi|16741219|gb|AAH16450.1| Ribonucleotide reductase M1 [Mus musculus]
 gi|26352964|dbj|BAC40112.1| unnamed protein product [Mus musculus]
 gi|74205882|dbj|BAE23230.1| unnamed protein product [Mus musculus]
 gi|74214440|dbj|BAE40455.1| unnamed protein product [Mus musculus]
 gi|148684655|gb|EDL16602.1| ribonucleotide reductase M1, isoform CRA_b [Mus musculus]
          Length = 792

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D             + 
Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|73988079|ref|XP_534027.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           1 [Canis familiaris]
          Length = 792

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTEL------ 578

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 579 ----WDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKATKEEEEKERNTAAMVCSLENREECLMC 790


>gi|120437795|ref|YP_863481.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
 gi|117579945|emb|CAL68414.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
          Length = 819

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/802 (36%), Positives = 451/802 (56%), Gaps = 27/802 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C GL + V    V     + +YD ++ S+L+    
Sbjct: 1   MYVVKRDGRKEPVMFDKITARVKKLCYGLNELVDPVKVAMRVIEGLYDNVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +    T  +         M  LY     R  E+ 
Sbjct: 61  EIAATMTTSHPDYAKLAARISVSNLHKNTKKTFSEV--------MTDLYEYVNPRTGEKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RDF+++Y G + L   Y L +NG   E PQ   MR
Sbjct: 113 PLLSDEVYKVIIENKEKLDSTIIYNRDFSYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ + +      A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSIGIHIDD---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A W+PDLFMKRV QN  WTL
Sbjct: 290 GKRKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEQNEKWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   L D YG+EFE  YE YE      E K  + I A  LW K+     ETG P++
Sbjct: 350 MCPQECPGLFDTYGEEFEKLYEKYEA-----ENKGRKTIKARELWEKITESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L      N+FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEILEYTSPDEVAVCNLASIALPMFIKGNEFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   + L+ VID N + +++A+ SN  HR +GLG+ G       L +P+ S +A +
Sbjct: 465 FKITKRVTKNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADTFIKLRMPFTSDKAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+ELA+E G YS+FKGS   +G F  +  G+  E       + +
Sbjct: 525 LNQEIFETLYFAAVTASMELAKEEGPYSTFKGSPISEGEFQYNLWGIKDE-------DLS 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W +L+K+V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWGKLRKQVMKEGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L  R+LWD+ + + +  ++GS+ +I+ IPDDLK+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVSRNLWDDEVKNAIMRNNGSVQDIDIIPDDLKELYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K TL+   
Sbjct: 698 HRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLEKEK 757

Query: 921 GKLNAVPVTDPNSSTHSLGIPS 942
            K   V V++  +        +
Sbjct: 758 KKEPIVAVSEAPAKAAEKLQAA 779


>gi|268573646|ref|XP_002641800.1| C. briggsae CBR-RNR-1 protein [Caenorhabditis briggsae]
 gi|187031585|emb|CAP29649.1| CBR-RNR-1 protein [Caenorhabditis briggsae AF16]
          Length = 790

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/818 (34%), Positives = 448/818 (54%), Gaps = 39/818 (4%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE 199
                ++  DG + + +  ++   +++   GL    V    V  +    +Y G++  +L+
Sbjct: 4   HNSTYVVKRDGRMENVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELD 63

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ ++  + P YA + AR  +  L ++          K     M+ L+  +    
Sbjct: 64  NLAAETAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPHT 115

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +           ++  +   L + + Y+RD+++ Y G + L   Y L IN   +E PQ 
Sbjct: 116 GKHAPMISDETWEIIQKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEVVERPQQ 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+  K+      A+E YNL+S  +   ++PTLFNSGT  PQ+SSCFL T+  D
Sbjct: 176 MLMRVAIGIHGKDIS---AAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSED 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+IP L+V N+TA  V
Sbjct: 233 SILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYV 292

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ EF+ LRKNTG +  R  D+  A W+PDLFMKRV ++ 
Sbjct: 293 DQGGNKRPGAFAIYLEPWHADIFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQ 352

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L D +G+EFE  Y  YE      E +V + + A  LW  +++   ETG
Sbjct: 353 DWSLMCPCECPGLDDCWGEEFETLYAKYEA-----EGRVRKTVKARKLWEHIVSNQIETG 407

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-F 616
            P+IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL SI L     N++ F
Sbjct: 408 LPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALNRFVTNDKKF 467

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +   + L+ +ID+N + IE+A+ SN  HR IGLG+ G      L+  P+ S
Sbjct: 468 DFVKLAEVTKVITKNLNKIIDVNYYPIEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTS 527

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           P+A ++     E I + A+ AS ELA+  G YS+++GS   +G    D  G+        
Sbjct: 528 PQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTP------ 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T++  WDEL+K++   G+RNS  MA  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 582 ----TNQCNWDELRKKIAKHGVRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLS 637

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF +VN  ++ +L +R LW + M + L  ++GSI NI  IPDD+K+++ T +EI    +
Sbjct: 638 GDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPGIPDDIKELYLTVWEISQKEI 697

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           IE A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  YYLR++ A +  + T
Sbjct: 698 IEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFT 757

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     +   V   +   ++           D  C +C
Sbjct: 758 VDKAALQQKNVQKAESRVASPEAQ-------DEGCLMC 788


>gi|109107703|ref|XP_001113010.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Macaca mulatta]
          Length = 792

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/816 (35%), Positives = 455/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W+ LK+ +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   +   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKISKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|311263375|ref|XP_003129662.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Sus scrofa]
          Length = 793

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/815 (35%), Positives = 454/815 (55%), Gaps = 30/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L I+G   E PQ   M
Sbjct: 113 SPMVARSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE YE+     +  V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYEK---NRKGHVRKVVKAQQLWYAIIESQTETGTPY 406

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 407 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 466

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 467 KLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 526

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 527 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 577

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 578 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 636

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 637 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 696

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 697 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 756

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K       +     ++  +  S  +  EC +C
Sbjct: 757 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 791


>gi|313675914|ref|YP_004053910.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga
           tractuosa DSM 4126]
 gi|312942612|gb|ADR21802.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga
           tractuosa DSM 4126]
          Length = 826

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/850 (33%), Positives = 453/850 (53%), Gaps = 67/850 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   +    ++   +E+ C GL    +    V  +    +YDG++  +L+   
Sbjct: 1   MLVVKRDGRRETVKFDKITARIEKLCYGLDLNYIQPIDVARKVINGIYDGVTTQELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+Y+K++AR  +  L +           K+  + M+ LY     +  + 
Sbjct: 61  AETAASMTVKHPDYSKLSARIAISNLHKTT--------SKSFSNTMKRLYTYVDAKTGQN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF +++ G + L   Y + ++G  +E PQ   M
Sbjct: 113 APLLSTETYGIIKKHAAQLDSAIIYDRDFGYDFFGFKTLERSYLMKVDGKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+G+     E  + A++ YNL+S   F  +TPTLFN+GT  PQLSSCFL T+  D + 
Sbjct: 173 RVAIGIHG---EDIESAIKTYNLMSEKWFTHATPTLFNAGTPKPQLSSCFLLTIQEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     VR  G++I GT G S G++P L+  + TA  V+QG
Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTGGVSNGIVPMLRNFDMTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH D+ +FLDL+KN G +  R  D+  A W+ DLFMKRV  NA WT
Sbjct: 290 GGKRKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANAEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E S L + YG +FE  YE YER     E K  + + A  LW ++L    ETG P+
Sbjct: 350 LFDPNEASGLDEAYGDDFEKLYEKYER-----EGKGRKTVKAQELWFEILESQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L             
Sbjct: 405 MLYKDAANKKSNQKNLGTIKSSNLCTEILEYTSKDEVAVCNLASIALPMFVQEDENGQKF 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+DKL     TA   L+ VID+N + +E+A+ SN  HR IGLG+ G   A  LL  P+ 
Sbjct: 465 FDHDKLYDITYTATVNLNRVIDVNYYPVEEARTSNMRHRPIGLGVQGLADAFMLLRYPFD 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E+ ++  E  E I F A++AS +LA + G Y ++KGS   +G+F  D   +    R  
Sbjct: 525 SEESRKLNKEIFETIYFAAMTASKDLAVKEGPYETYKGSPVSKGIFQFDMWNVEPTDR-- 582

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  LK+ VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 583 --------WDWTTLKQEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTL 634

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L +R +W++ M + L   +GS+ +I  IP D+K+++ T +EI    
Sbjct: 635 SGEFVVVNKHLMRDLIERGMWNDNMKNKLIAANGSVQDIADIPQDIKELYKTVWEISQKA 694

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +I Q+QS+NL++ +P+  K+  ++  AW  GLKT  YYLRS++ATS  + 
Sbjct: 695 IIDMAADRGAYICQSQSMNLFMQDPNFGKMTSMHFYAWKKGLKTGMYYLRSKAATSAIQF 754

Query: 915 TLKG-------------------------------VDGKLNAVPVTDPNSSTHSLGIPSS 943
           T+                                   G+       D  ++  +  +  S
Sbjct: 755 TVDKSQLNEPQPEQKPQDITQSTDTKVNRPQNSVGTQGQGPQANAEDDLAALKAAQVACS 814

Query: 944 CTSDTECEVC 953
             +  +CE+C
Sbjct: 815 LDNPDDCEMC 824


>gi|332211477|ref|XP_003254845.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Nomascus leucogenys]
          Length = 792

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    ++  
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   V   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|200765|gb|AAA40061.1| ribonucleotide reductase subunit M1 [Mus musculus]
          Length = 792

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  + PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D             + 
Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|4506749|ref|NP_001024.1| ribonucleoside-diphosphate reductase large subunit [Homo sapiens]
 gi|132608|sp|P23921|RIR1_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|323714413|pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714414|pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714415|pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714416|pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714417|pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714418|pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714419|pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|323714420|pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|36065|emb|CAA42118.1| M1 subunit of ribonucleotide reductase [Homo sapiens]
 gi|36153|emb|CAA42180.1| large subunit ribonucleotide reductase [Homo sapiens]
 gi|13676332|gb|AAH06498.1| Ribonucleotide reductase M1 [Homo sapiens]
 gi|119622988|gb|EAX02583.1| ribonucleotide reductase M1 polypeptide [Homo sapiens]
 gi|123991808|gb|ABM83954.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
 gi|123999422|gb|ABM87271.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
          Length = 792

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   V   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|17555242|ref|NP_499039.1| RiboNucleotide Reductase family member (rnr-1) [Caenorhabditis
           elegans]
 gi|417657|sp|Q03604|RIR1_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|3880121|emb|CAA79574.1| C. elegans protein T23G5.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 788

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/814 (34%), Positives = 442/814 (54%), Gaps = 41/814 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG     +  ++   +++   GL    V    V  +    +Y G++  +L+    
Sbjct: 8   YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++  + P YA + AR  +  L ++          K     M+ L+  +     +  
Sbjct: 68  ETAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPHTGKHA 119

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                   ++++ +   L + + Y+RD+++ Y G + L   Y L IN   +E PQ   MR
Sbjct: 120 PMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMR 179

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           V++G+   +      A+E YNL+S  +   ++PTLFNSGT  PQ+SSCFL T+  D + G
Sbjct: 180 VSIGIHGDD---ITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILG 236

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+IP L+V N+TA  V+QG 
Sbjct: 237 IYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGG 296

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH D+ EF+ LRKNTG +  R  D+  A WIPDLFMKRV ++  W+L
Sbjct: 297 NKRPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSL 356

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   L D +G+EFE  Y  YE      E +V + + A  LW  +++   ETG P+I
Sbjct: 357 MCPCECPGLDDCWGEEFEALYAKYEA-----EGRVRKTVKARKLWEHIVSNQIETGLPYI 411

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDK 620
           T+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL SI L  +     +FD+ K
Sbjct: 412 TYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVK 471

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           LA   +   R L+ +ID+N + +E+A+ SN  HR IGLG+ G      L+  P+ S EA 
Sbjct: 472 LAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEAR 531

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++     E I + A+ AS ELA+  G YS+++GS   +G    D  G+            
Sbjct: 532 DLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTP---------- 581

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T +  W  L+K++   G+RNS  MA  PTA+ A I G ++SI+P   N+Y +  +SGDF 
Sbjct: 582 TDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQ 641

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  ++ +L +R LW + M + L  ++GSI NI+ IP D+K+++ T +EI    +IE A
Sbjct: 642 IVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMA 701

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  YYLR++ A +  + T+   
Sbjct: 702 ADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKN 761

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K N    T    +          + D  C +C
Sbjct: 762 ALKTNQQAETPATVAE---------SQDEGCLMC 786


>gi|114635715|ref|XP_001160029.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 4 [Pan troglodytes]
          Length = 792

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   V   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|311263373|ref|XP_003129661.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Sus scrofa]
          Length = 791

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/815 (35%), Positives = 455/815 (55%), Gaps = 32/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ L+        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L I+G   E PQ   M
Sbjct: 113 SPMVARSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YERQ       V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYERQGH-----VRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789


>gi|46446982|ref|YP_008347.1| ribonucleoside-diphosphate reductase large chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400623|emb|CAF24072.1| probable ribonucleoside-diphosphate reductase large chain
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 773

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/814 (35%), Positives = 438/814 (53%), Gaps = 48/814 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   + + C GL    +   ++  +  + ++DG++ S+L+   
Sbjct: 1   MFVTKRDGRKQEVKFDKITARILKLCYGLDSVHIDPVLIAMKVIEGLFDGVTTSELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + +L  K P+YA + +R  +  L++           K+    +  LY     +  ++
Sbjct: 61  AEVAASLTVKHPDYALLASRIAISNLQKNT--------NKSFARTIGELYHYIDPKTGKK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L   + Y+RDF ++Y G + L   Y L ING  IE PQ   M
Sbjct: 113 ASLIAEDVYKIVQNHAEILDATMIYDRDFGYDYFGFKTLERSYLLKINGKVIERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+   +      A+E Y+ +S   F  +TPTLFN+GT +PQ+SSCFL  V  D + 
Sbjct: 173 RVSIGIHKNDIS---AAIETYHWMSERWFTHATPTLFNAGTPYPQMSSCFLMQVKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+  A +++ +GG+G     +R  G++I GT G S G+IP L+V NDTA  ++QG
Sbjct: 230 GIFDTLKACAKISQAAGGIGLSIHNIRATGSYIRGTGGISNGIIPMLRVYNDTARYIDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH D+  FLDLRKN G +  R  D+ TA WIPDLFMKRV ++  W+
Sbjct: 290 GGKRKGSFAIYLEPWHADIYAFLDLRKNHGKEELRARDLFTALWIPDLFMKRVEEDGVWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E  +LH+ +G+EFE  Y  YE+     E K    I A  LW K+L    ETG+P+
Sbjct: 350 LFCPNEAPNLHECWGEEFEHLYCLYEQ-----EGKAREVIKAQDLWFKILESQIETGNPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + FKD CN +S Q+H+G +  SNLCTEI   +S  E AVCNL SI L     N  FD+ K
Sbjct: 405 MLFKDACNYKSNQKHLGTIKLSNLCTEIIEYTSPHEAAVCNLASIALPRFIINGHFDHQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R LD +ID N + I +A+ SN  HR IG+G+ G   A  LL +P+ S EA 
Sbjct: 465 LFEVTQVITRNLDKIIDENSYPIVEAQTSNLLHRPIGIGVQGLADAFILLRMPFDSKEAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +     E I F A++AS +LA+++G Y S++GS   +G+   +             +  
Sbjct: 525 ALNQAIFETIYFGALTASKDLAKKKGRYPSYEGSPISKGILQYEMWN----------VKP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +S   W+ LK  +   G+RNS  +A+ PTA+ + I G ++  +P   NLY +  +SG+F 
Sbjct: 575 SSNWDWEALKTEIAVHGIRNSLLVALMPTASTSQILGNNECFEPYTSNLYTRRVLSGEFI 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L +R+LW+E M   +   +GSI  IE IP ++K+++ T +EI    LI+ A
Sbjct: 635 VVNKHLMRDLVKRELWNEEMKQRILAANGSIQGIEEIPSEIKELYKTVWEIKQKALIDMA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL+++ P+  KL  ++  AW  GLKT  YYLR ++A    K T+   
Sbjct: 695 ADRGPFICQSQSLNLFVESPTFAKLSSMHFYAWKKGLKTGMYYLRIKAAAEAIKFTVNQN 754

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +                    +C+ D  C  C
Sbjct: 755 YEQPQQE---------------IACSLD--CLSC 771


>gi|61557388|ref|NP_001013254.1| ribonucleotide reductase M1 [Rattus norvegicus]
 gi|55250768|gb|AAH85906.1| Ribonucleotide reductase M1 [Rattus norvegicus]
 gi|149068638|gb|EDM18190.1| ribonucleotide reductase M1 (mapped), isoform CRA_b [Rattus
           norvegicus]
          Length = 792

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVASSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IP+DLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|197100140|ref|NP_001126012.1| ribonucleoside-diphosphate reductase large subunit [Pongo abelii]
 gi|75041664|sp|Q5R919|RIR1_PONAB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|55730032|emb|CAH91741.1| hypothetical protein [Pongo abelii]
          Length = 792

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKEA--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  S+LCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   V   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|132609|sp|P07742|RIR1_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
          Length = 792

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  + PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D             + 
Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW++ M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNKEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790


>gi|62897131|dbj|BAD96506.1| ribonucleoside-diphosphate reductase M1 chain variant [Homo
           sapiens]
          Length = 792

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/816 (35%), Positives = 452/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L  NG   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKTNGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +    I + A+ AS +LA+E+G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFGTIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   V   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|71020483|ref|XP_760472.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
 gi|46100377|gb|EAK85610.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
          Length = 1117

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/800 (35%), Positives = 428/800 (53%), Gaps = 33/800 (4%)

Query: 144  KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
             + +   DG        ++   + + C GL    V    +  +  + +Y+G++  +L+  
Sbjct: 232  MIYVYKRDGRKEVVKFDKVTARISKLCYGLDQNYVDPIEITRKVIEGIYEGVTTVELDNL 291

Query: 202  LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               ++       P+YA + AR  +  L +E      +          Q LY     +   
Sbjct: 292  AAETAAYKTTTHPDYAVLAARIAISNLHKETSKNFSQVV--------QALYEYVNPKNGR 343

Query: 262  EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                       ++      L + + YERDF + + G + L   Y L ING   E PQ   
Sbjct: 344  HSPMISDATYKVVMEHKDQLDSAIIYERDFHYNFFGFKTLERSYLLRINGKVAERPQHML 403

Query: 322  MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
            MRVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT HPQLSSCFL T+ DD +
Sbjct: 404  MRVAVGIHGQDIE---SAIETYNLMSQKYFTHASPTLFNAGTPHPQLSSCFLVTMKDDSI 460

Query: 381  YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             GI+  L+  AM++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+Q
Sbjct: 461  DGIYDTLKTCAMISKTAGGIGLNIHCIRGTGSYIAGTNGVSNGIVPMLRVFNNTARYVDQ 520

Query: 441  G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
            G  KR GA   Y+E WH DV EFLDLRKN G +  R  ++  A W+PDLFMKRV QN  W
Sbjct: 521  GGNKRPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDW 580

Query: 500  TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            +L  P+E   L D YG EFE  YE YE      E +  R + A  LW  +L    ETG+P
Sbjct: 581  SLMCPNECPGLADCYGDEFERLYERYEA-----EGRSKRTVKAQKLWYAILESQTETGNP 635

Query: 560  WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFD 617
            +I +KD  N +S Q+++G +  SNLCTEI   S+ +E AVCNL SI L          +D
Sbjct: 636  FILYKDAANRKSNQKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKTYD 695

Query: 618  YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + +L S  +   + L+ +IDIN + +E+A+KSN  HR IG+G+ G   A  ++   + S 
Sbjct: 696  FKRLHSVAKAICKNLNKIIDINYYPVEEARKSNMRHRPIGIGVQGLADAFMIMGYAFESA 755

Query: 678  EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            EA  +  +  E I   A+  S ELA++ G+Y ++ GS   QG    D  G+         
Sbjct: 756  EARRLNVQIFETIYHAALERSCELAEQHGSYETYAGSPASQGELQYDMWGVTP------- 808

Query: 738  MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
               +    W ELK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G
Sbjct: 809  ---SDLWDWAELKAKIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAG 865

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            +F VVN +L+ EL ++ LW++ M + +  H GSI N+  IPD +KK++ T +EI    +I
Sbjct: 866  EFQVVNPWLLRELVEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKAII 925

Query: 858  ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
            + A+ R  +I Q+QSLN++L  P+  +L  ++   W  GLKT TYYLR++ A++  + TL
Sbjct: 926  DMAADRGAFICQSQSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAIQFTL 985

Query: 917  KGVDGKLNAVPVTDPNSSTH 936
               +             +  
Sbjct: 986  SVAEVNEAKAAGKRNGGAVE 1005


>gi|167524415|ref|XP_001746543.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774813|gb|EDQ88439.1| predicted protein [Monosiga brevicollis MX1]
          Length = 784

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/816 (35%), Positives = 432/816 (52%), Gaps = 41/816 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   VE+   GL    V    +  +    +Y G+  + L+   
Sbjct: 1   MYVVKRDGRHEPVLFDKITNRVEKLSFGLNRDYVEPVEITKKVMAGVYSGVHTTQLDQLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +   + P+YA + AR  +  L ++          K+    M+ L+     +  + 
Sbjct: 61  AETAASFTTRHPDYAILAARISVSNLHKQT--------NKSFSQTMKALHEYVNPKTGKL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    ++++ +   L + + Y+RDF F + G + L   Y L ING  +E PQ  FM
Sbjct: 113 APLVSDETWAVIEKNKELLDSHVIYDRDFNFNFFGFKTLERSYLLKINGQVVERPQHMFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+           +E YN +S   F  ++PTLFNSGT   QLSSCFL ++ DD + 
Sbjct: 173 RVSVGIHGD---NLDAVLETYNHMSQGLFTHASPTLFNSGTPLAQLSSCFLVSMKDDSIK 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L   AM++K +GG+G     VR  G++I GTNG+S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLTTCAMISKTAGGVGLSIHNVRASGSYIAGTNGESNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDL+KN G D  R  D+  A W+PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAVYLEPWHADVFEFLDLKKNHGSDELRARDLFYALWVPDLFMKRVERNEQWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D YG EFE  YE YER     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LMCPHECPGLADCYGAEFEALYERYER-----EGRGRKTIDAQKLWFAILESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618
           + +KD CN +S Q+++G +  SNLCTEI   S+ +E AVCNL S+ L          +D+
Sbjct: 405 MLYKDACNEKSNQKNLGTIRCSNLCTEIVEYSAPDEVAVCNLASLALPKFVNEDTRTYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L   ++   R L+ +IDIN + + +AK SN  HR IG+G+ G   A  L+ +P+ SPE
Sbjct: 465 ERLHDVVKIVTRNLNRIIDINYYPVPEAKNSNMRHRPIGIGVQGLADAFILMRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++     E I   A+ AS E+AQ  G Y +++GS   QG    D  G+          
Sbjct: 525 ARDLNKRIFETIYHAALEASCEIAQRDGPYKTYEGSPVSQGTLQYDMWGITP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T +  W  LK ++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SGD
Sbjct: 577 --TDQWDWAALKAKIAEHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGD 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L +  +W   +   +  ++GSI  I  IPDD+K ++ T +E+    LI+
Sbjct: 635 FQVVNKHLLKDLVELGIWSNDIKQQIILNNGSIQAIAGIPDDIKALYKTVWELSQRTLID 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+++ EP+  KL  ++  AW  GLKT  YYLR+R+A S  K T+ 
Sbjct: 695 LAADRGAFIDQSQSFNVHMGEPNFGKLTSMHFYAWKQGLKTGMYYLRTRAAASAIKFTID 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K                 +  S T+   C +C
Sbjct: 755 ATKAK--------EQQEKEEAAMVCSLTNPEGCLMC 782


>gi|83769274|dbj|BAE59411.1| unnamed protein product [Aspergillus oryzae]
          Length = 794

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/819 (34%), Positives = 437/819 (53%), Gaps = 35/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +  + 
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYINPKNKKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L I+G   E PQ   M
Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVSVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYERYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +IDIN + + +AK SN  HR I LG+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA++ G Y S++GS   QG+   D              
Sbjct: 525 AKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD--TECEVCQ 954
               K+    V   N+S         C+ +    C +CQ
Sbjct: 755 QEALKVADTNVARANASFRKRAKVLQCSIENKEACLMCQ 793


>gi|302689939|ref|XP_003034649.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
 gi|300108344|gb|EFI99746.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
          Length = 892

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/801 (34%), Positives = 433/801 (54%), Gaps = 31/801 (3%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            +             +++  +++ C GL    V    +  +  + +Y G++  +L+    
Sbjct: 5   YVFKRGTRKEQIQLGKIQSRIKKLCYGLDMRHVDPLAITIKVVQGVYHGVTTVELDNLAA 64

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  L  + P+YA + AR  +  L +E   +  +  +K        LY     +  +  
Sbjct: 65  ETAAYLTTQHPDYAVLAARIAISNLHKETTKSFSQVVEK--------LYNYVNPKNGKRA 116

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y+RDFA+ Y G + L   Y L ING   E PQ   MR
Sbjct: 117 SMISDATYKVVMDNAETLDSAIIYDRDFAYNYFGFKTLERSYLLRINGRVAERPQHMIMR 176

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           VA+G+     E+    +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL ++ DD + G
Sbjct: 177 VAVGIHGDNIERV---LETYNLMSDRYFTHASPTLFNAGTPHPQMSSCFLVSMKDDSIEG 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L++ AM++K +GG+G +   +R  G++I GTNG S G++P L+  + TA  V+QG 
Sbjct: 234 IYDTLKQCAMISKTAGGIGLNIHNIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGG 293

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH DV EFLDLRKN G + +R  D+  A WIPDLFMKRV     W+L
Sbjct: 294 NKRPGAFAIYLEPWHPDVFEFLDLRKNHGKEEQRARDLFYALWIPDLFMKRVESGGDWSL 353

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P+E   L D +G EFE  Y  YE      E +  +KI A  LW  +L    ETG+P++
Sbjct: 354 FCPNEAPGLADCWGDEFEALYAKYEA-----EGRERKKIPAQKLWYAILEAQIETGNPFM 408

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S QQ++G + SSNLCTEI   S+ +ETAVCNL S+ L     +  +D+ KL
Sbjct: 409 LYKDSANRKSNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASLALPTFIRDGVYDFQKL 468

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   R L+ +ID+N + + +A++SN  HR IGLG+ G   A   L +P+ SPEA E
Sbjct: 469 HDVTKVVTRNLNKIIDVNYYPVPEARRSNMRHRPIGLGVQGLADAFMALRMPFDSPEARE 528

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E I   A  AS +LA+E G Y +++GS   QG    D  G+            +
Sbjct: 529 LNKQIFETIYHAACEASSDLAEEEGPYETWEGSPASQGQLQFDLWGVTP----------S 578

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W  LK ++   GMRN+  +A  PTA+ + I G ++  +P   N+Y +  ++G+F V
Sbjct: 579 DLWDWASLKAKIARTGMRNALLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQV 638

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V  +L+ EL  + LWD+ M + +  ++GSI +I RIPDD+K I+ T +EI    +++ A+
Sbjct: 639 VCPWLLRELVDKGLWDDKMKNQIIANNGSIQSIARIPDDIKAIYKTVWEISQKKVLDLAA 698

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +I Q+QSLN++L  P+  +L  ++   W  GLKT  YYLR+R A+   + T+    
Sbjct: 699 DRGPFICQSQSLNVHLAAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPASQAIQFTVDQAM 758

Query: 921 GKLNAVPVTDPNSSTHSLGIP 941
            K +     +   +     + 
Sbjct: 759 LKESNKAEGEVAGAPARPVVA 779


>gi|91215506|ref|ZP_01252477.1| probable ribonucleoside-diphosphate reductase large chain
           [Psychroflexus torquis ATCC 700755]
 gi|91186458|gb|EAS72830.1| probable ribonucleoside-diphosphate reductase large chain
           [Psychroflexus torquis ATCC 700755]
          Length = 815

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/836 (34%), Positives = 453/836 (54%), Gaps = 50/836 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  +G        ++   + + C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MHVIKRNGQKEPVMFDKITARIRKLCYGLNPLVEPAKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             S T+    P+YA++ AR  +  L +    +  +         M  LY     R  ++ 
Sbjct: 61  EISATMTVSHPDYAQLAARISVSNLHKNTKKSFSEV--------MADLYEYVNPRNNKKS 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    +++     L + + Y RDF ++Y G + L   Y L +NG   E PQ   MR
Sbjct: 113 PLIADDVYKVIEEHKDELDSRIIYSRDFNYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+     E  +  +E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSLGIHG---EDLESVLETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTARISQSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+  FLDL+KN G +  R  D+  A WIPDLFMKRV +N+ WTL
Sbjct: 290 GKRKGSFAMYVEPWHADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENSTWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  +L++++ +EF+  Y  YE+     E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPNLYNVHSEEFDELYLKYEQ-----ENKGRKTIKARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +F + +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGEFQHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +  ++ L+ VID N + +++A+ SN  HR +GLG+ G   A  +L +P+ S EA +
Sbjct: 465 YKITKQIIKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A+ +S+ELA+  G YSSF+GS   +G F  +  GL          + +
Sbjct: 525 LNQEIFETLYFAAVESSMELAKIEGPYSSFEGSPISKGEFQFNLWGLTDN-------DTS 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W +L+++V   G+RNS  MA  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWNWSKLREKVMKHGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LWD+ +   +   +GS+  I+ IPDD+K+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLKDLVSLGLWDDDLKDAIMRANGSVQGIDIIPDDIKELYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K TLK   
Sbjct: 698 QRGYFIDQSQSLNLFMEGATFAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLKSEK 757

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSC-----------------------TSDTECEVC 953
            +  A      N++       S                         + D +CE+C
Sbjct: 758 KEKEAPSQVVQNAAKTYEEAQSQSIKVSDDSSLSPEELKALIKQSKESEDDDCEMC 813


>gi|149634836|ref|XP_001505371.1| PREDICTED: similar to M1 subunit of ribonucleotide reductase
           [Ornithorhynchus anatinus]
          Length = 792

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKYPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYVNPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKTTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVAVGIH---EEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNRDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L       + +D+ 
Sbjct: 405 MLYKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSRDEVAVCNLASLALNMFVTLEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEASTSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA++ G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNQQIFETIYYGALDASCDLAKDHGPYETYQGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IP+DLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VDGKLNAVPVTDPNSST-HSLGIPSSCTSDTECEVC 953
              K       +      ++  +  S  +  EC +C
Sbjct: 755 EKLKEKEKATKEEEEKERNTAAMVCSLENREECLMC 790


>gi|5006420|gb|AAD37491.1| ribonucleotide reductase M1 subunit [Homo sapiens]
          Length = 792

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKQDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   V   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|225683656|gb|EEH21940.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb03]
          Length = 797

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/821 (34%), Positives = 436/821 (53%), Gaps = 38/821 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNGRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAIGIHGDDVERV---IETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I    ++AS ELA+  G YSS++GS   QG+   D  G+          
Sbjct: 525 AKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSC-----TSDTECEVC 953
               K+    V   N +       S+       +   C +C
Sbjct: 755 QEQLKVADTNVARVNGAMKKRAAVSASYTSSIENPESCLMC 795


>gi|146298284|ref|YP_001192875.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           johnsoniae UW101]
 gi|146152702|gb|ABQ03556.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           johnsoniae UW101]
          Length = 797

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/818 (35%), Positives = 458/818 (55%), Gaps = 32/818 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   +++ C GL + V    V     + +YDG+S S+L+    
Sbjct: 1   MYVVKRDGHREPVMFDKITERIKKLCYGLNELVDPVKVAMRVIEGLYDGVSTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YA++ AR  +  L            +K+    M+ +Y     R  ++ 
Sbjct: 61  ETAASMTIAHPDYAQLAARVAISNLHSNT--------KKSFSETMKDMYNYVNPRNGQDA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +  +L + + Y RDF ++Y G + L   Y L ING  +E PQ   MR
Sbjct: 113 PLIADDVYKVIQENAAFLDSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +    K  +E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  + DD + G
Sbjct: 173 VSVGIHLDD---LKSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+ETWH D+ +FLDL+KNTG +  R  D+  A W  DLFMKRV +++ WTL
Sbjct: 290 GKRKGSFAIYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDSTWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D+YG EFE  Y +YE        K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPGLYDVYGDEFEALYTDYE-----FRGKGRKTIRARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S  +++G + SSNLCTEI   +S +E AVCNL SI+L     N +FD+  L
Sbjct: 405 LYKDAANRKSNHKNLGTIRSSNLCTEIMEFTSKDEIAVCNLASISLPMFIDNGEFDHQAL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +  +   R L+ VID N + +++A+ SN  HR +GLG+ G   A  +L +P+ S EA +
Sbjct: 465 YNVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+E+A+E G YS+F+GS   QG F  +  G+  E         +
Sbjct: 525 LNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPMSQGEFQYNMWGMKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWASLRKEVVEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L +  LW+E +  ++  H+GS+ NI++IP DLK ++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVKLGLWNEDLKQEIMRHNGSVQNIDKIPQDLKDLYKTVWEMSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL++ + +  KL  ++  AW  GLKT  YYLR+++A    K TL    
Sbjct: 698 QRGYFIDQSQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLNNDK 757

Query: 921 GKLNAVPVTDPNSSTHSLG-----IPSSCTSDTECEVC 953
            +  A  +     +          + +      +CE+C
Sbjct: 758 KEETAPSLVQETEAISVEDYKAMLLKAQAADPEDCEMC 795


>gi|149719333|ref|XP_001499936.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase subunit
           M1) (Ribonucleotide reductase large subunit) [Equus
           caballus]
          Length = 792

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/816 (35%), Positives = 455/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKPTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIHS---EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L     + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTSEHTYDFQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +L++E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLSREDGPYETYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I+ IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWEISQKTILKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKASKEEEEKERNTAAMVCSLENRDECLMC 790


>gi|159899094|ref|YP_001545341.1| ribonucleoside-diphosphate reductase subunit alpha [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892133|gb|ABX05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 806

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/795 (55%), Positives = 558/795 (70%), Gaps = 8/795 (1%)

Query: 162 LEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220
           L  ++ EAC+       +  +        Y  ++ ++   A   ++R+ IE+EP+Y+ V 
Sbjct: 18  LYQLIVEACAAYPQTTDANTLWQAASLGFYPNMAVAEQLQACCLTARSWIEQEPDYSFVA 77

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           A  L  +L  EVL      P           Y   F  YI+ G+   LL   +  FDL  
Sbjct: 78  AALLASQLHFEVLGEYLATPAVV------PRYASAFVDYIQAGIAQGLLDPKLASFDLAR 131

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           LA  +  ERD    Y GLQ LYDRYF+   G R E+PQ F+MRVAMGLAL E ++E + +
Sbjct: 132 LAAAIVPERDALLAYPGLQTLYDRYFIQWQGLRRELPQIFWMRVAMGLALNEADREAQTL 191

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            FY +LS FHF  +TPTLFN+ T HPQLSSC+L+TV DDL  IFGA+ +NAML+K++GGL
Sbjct: 192 RFYEVLSQFHFTSATPTLFNAATTHPQLSSCYLSTVGDDLEAIFGAISDNAMLSKWAGGL 251

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           GNDWTPVR LGA IHGTNG SQGVIPFLK+ NDTA+AVNQGGKRKGAVCAYLE WH D+E
Sbjct: 252 GNDWTPVRALGAPIHGTNGVSQGVIPFLKIVNDTAIAVNQGGKRKGAVCAYLEAWHADLE 311

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +FLDLRK TGD+RRRTHDM+TA W+PDL M+RV  N  W+LFSPDEV DLHDLYG++F +
Sbjct: 312 DFLDLRKPTGDERRRTHDMHTALWVPDLLMERVLSNGSWSLFSPDEVPDLHDLYGQDFAV 371

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y  YE  A +G ++  R++ AVALWRK+LT LFETGHPWIT+KD  N+RSPQ HVGV+H
Sbjct: 372 RYAEYEALAAQGLMRSARQVEAVALWRKVLTRLFETGHPWITWKDAANVRSPQDHVGVIH 431

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           SSNLCTEI LN+S++E AVCNLGSINL AH  +   D +KL +T+ TAVR+LDNVIDIN 
Sbjct: 432 SSNLCTEILLNTSADEIAVCNLGSINLAAHIRDGSLDLEKLRTTVTTAVRMLDNVIDINF 491

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +   +A ++N  HR IGLGLMGFQ AL+ L I YAS  AVE +D SME I++ A++AS+E
Sbjct: 492 YPRPQAAQANARHRPIGLGLMGFQDALYALKIGYASQAAVEFSDRSMEAIAYFAVAASIE 551

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMR 759
           LA+ERGAY SF+GS WD+G+ PIDS+ +LAE RD +  ++ +S   W  L++ +   G+R
Sbjct: 552 LARERGAYPSFRGSKWDRGMLPIDSLAILAEQRDSKPELDHSSHYDWQPLREALAQYGIR 611

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NSN +AIAPTATIANI G SQSI+P+Y++LYVKSN+SGDFT VN  LV+ LK R LWD  
Sbjct: 612 NSNLLAIAPTATIANIVGTSQSIEPTYRHLYVKSNLSGDFTTVNRALVDALKARGLWDVD 671

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
           ++++LKY+DG+I  IERIP +LK    TAFEI P WLI  A+RRQKWID  QSLNLY+ E
Sbjct: 672 LLAELKYYDGAISQIERIPAELKTQFLTAFEIAPEWLIACAARRQKWIDMGQSLNLYVAE 731

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            SGK+L+ IY  AW MGLKTTYYLR+ +AT +EKSTL      +    + + + S   L 
Sbjct: 732 TSGKRLNEIYLTAWRMGLKTTYYLRTLAATQIEKSTLDINRFGVQPRWMRNRSESASVLS 791

Query: 940 IPSSCTSDTECEVCQ 954
                  D  CE C+
Sbjct: 792 DNVCPIDDPSCEACE 806


>gi|42490975|gb|AAH66217.1| Ribonucleotide reductase M1 [Mus musculus]
          Length = 792

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/816 (35%), Positives = 452/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D             + 
Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK++  T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                       +      +  +  S  +  EC +C
Sbjct: 755 EKLKDKEKALKEEEEKERDTAAMVCSLENREECLMC 790


>gi|302307390|ref|NP_984039.2| ADL057Wp [Ashbya gossypii ATCC 10895]
 gi|299788978|gb|AAS51863.2| ADL057Wp [Ashbya gossypii ATCC 10895]
          Length = 890

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/810 (35%), Positives = 433/810 (53%), Gaps = 37/810 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    V +  +       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVKFDKITARISRLCYGLDPKHVDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      +            LY     +    
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSQVVS--------DLYHYTNPKNGLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L I+G   E PQ   M
Sbjct: 113 SPMISDEVYEIVMAHKDELNSAIVYDRDFQYNYFGFKTLERSYLLRIDGKVAERPQHMVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+  K+ +K   A+E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + 
Sbjct: 173 RVAVGIHGKDIKK---AIETYNLMSMRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +F+D+RKN G +  R  D+  A W+PDLFM+RV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHSDVFDFIDIRKNHGKEEIRARDLFPALWVPDLFMRRVQENGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L D++G+EFE  YE Y R     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLSDVWGEEFEELYERYVR-----EGRGRKTIKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL------LAHFANN 614
           I +KD CN +S Q+++G + SSNLC EI   SS EETAVCNL SI L       A     
Sbjct: 405 ILYKDACNRKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLASIALPAFIAEAADGKTQ 464

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +D+DKL    +   R L+ VID N + +E AK+SN  HR I LG+ G   A  +L IP+
Sbjct: 465 WYDFDKLHEIAKVVTRNLNRVIDRNYYPVETAKRSNMRHRPIALGVQGLADAFMILRIPF 524

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SP+A E+  +  E +   A  AS+ELA E G Y SFKGS   QG+   D          
Sbjct: 525 DSPQAKELNSQIFETLYHAACEASMELAIEEGPYESFKGSPASQGILQFDMWN------- 577

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 +    WD LK ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 578 ---HKPSGMWDWDALKAKIIEHGMRNSLLLAPMPTASTSQILGYNECFEPYTSNMYSRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN +L+ +L    +WD++M S +   +GSI  +  IP +LK ++ T +E+   
Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWDDSMKSHIISDNGSIQGLPNIPQELKDLYKTVWELSQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  ++DQ+QSLN+++  P+  +L  ++   W  GLKT  YYLR+++A++  +
Sbjct: 695 TIIDMAADRGAFVDQSQSLNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            T+     +  A  V D +       +P +
Sbjct: 755 FTVDKAVAEQAANNVADLSRLHRPRYVPHA 784


>gi|73988085|ref|XP_862223.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           5 [Canis familiaris]
          Length = 793

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/817 (35%), Positives = 453/817 (55%), Gaps = 34/817 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTEL------ 578

Query: 740 RTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                 W  LK+++    G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+
Sbjct: 579 ----WDWKLLKEKIANKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++
Sbjct: 635 FQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLK 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL 
Sbjct: 695 MAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 754

Query: 918 GVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                        +     ++  +  S  +  EC +C
Sbjct: 755 KEKLKDKEKATKEEEEKERNTAAMVCSLENREECLMC 791


>gi|322704073|gb|EFY95672.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           anisopliae ARSEF 23]
          Length = 905

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/809 (35%), Positives = 438/809 (54%), Gaps = 33/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNERA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 113 SPMISKDTYECVMRHKDELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E+    +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + 
Sbjct: 173 RVAVGIWGDNIERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YER     E K  R I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYER-----EGKGRRTIRAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A   +   ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYDEGRYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A+ SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS+ELA+E+G YS+FKGS   +G+   D   +          
Sbjct: 525 ARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW +AM + +   +GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +PS  K+  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               K+    V              +   
Sbjct: 755 QEALKVADANVGKDRLPKKRTAPAGTSYM 783


>gi|305665629|ref|YP_003861916.1| putative ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
 gi|88710385|gb|EAR02617.1| probable ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
          Length = 825

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/809 (36%), Positives = 442/809 (54%), Gaps = 27/809 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGRKELIMFDKITARVRKLCYGLNGLVDPLKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +          +K+    M+ LY     R  ++ 
Sbjct: 61  EIAATMTTTHPDYAKLAARISVSNLHKNT--------KKSFSETMEDLYTYVNPRTGKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  + V L + + Y RDF ++Y G + L   Y L +NG   E PQ   MR
Sbjct: 113 PLLSDEVYKVIAENSVALDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +        E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + G
Sbjct: 173 VSIGIHLDD---LDAVKETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ EFL+L+KN G +  R  D+  A WI DLFMKRV  N  WTL
Sbjct: 290 GKRKGSFAIYMEPWHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEEWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L   + +EFE  Y  YE      E K  + + A  LW K+L    ETG P++
Sbjct: 350 MCPNECPGLFTNHSEEFEKLYLKYE-----SENKGRKTVRARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   + L+ VID N + +++A+ SN  HR IGLG+ G   A  LL +P+ S EA +
Sbjct: 465 FRVTKRVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFILLRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+E A+E G YSS+ GS   QG F  +  G+  E         +
Sbjct: 525 LNQEIFETLYFAAVTASMEAAKEEGKYSSYDGSPISQGEFQHNLWGIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W +L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWTKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    +W+E M  +L   +GSI +IE IP D++ ++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVNLGMWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K TL    
Sbjct: 698 HRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNSK 757

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            K   V    P ++T + G+ ++      
Sbjct: 758 KKEEPVEAEVPLAATPAPGVANAIEVKPT 786


>gi|296217186|ref|XP_002754895.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Callithrix jacchus]
          Length = 792

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQR-----RVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI    ++  
Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                   V   +     ++  +  S  +  EC +C
Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMMCSLENRDECLMC 790


>gi|219110871|ref|XP_002177187.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411722|gb|EEC51650.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 814

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/837 (34%), Positives = 437/837 (52%), Gaps = 53/837 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G   S +  ++   V + C GL    V   I+  +  + +Y G++ S+L+  
Sbjct: 2   SMYVLKRNGRRESVHFDKITSRVSKLCYGLDAKHVDPVIISQKVIQGVYPGVTTSELDEL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ +   + P+Y+ + AR  +  L +  +       +          Y     +  E
Sbjct: 62  AAQTAASFATQHPDYSILAARVSVSNLHKMTIARFSDLVE--------VFYNYKHPKTGE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                      ++      L   + + RDF ++Y G + L   Y L ++G   E PQ   
Sbjct: 114 PASLISEEVYQIVQKHKDELDGAIVHARDFEYDYFGFKTLEKSYLLKVDGKIAERPQLML 173

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRV++G+   +  +    +E YN LS  +F  +TPTLFN+GT  PQ+SSCFL T+  D +
Sbjct: 174 MRVSVGIHGDDIPRV---IETYNFLSERYFTHATPTLFNAGTNMPQMSSCFLMTMKEDSI 230

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A+++KY+GG+G     VR   ++I GTNG S G++P L+V N+TA  V+Q
Sbjct: 231 DGIYDTLKNCAVISKYAGGIGLAIHNVRASQSYIRGTNGSSNGIVPMLRVFNNTARYVDQ 290

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKG++  YLE WH DV  FLDLRKN G++  R  D+  A W+PDLFMKRV  N  W
Sbjct: 291 GGGKRKGSIAIYLEPWHADVFAFLDLRKNHGNESDRARDLFFAMWVPDLFMKRVKDNGTW 350

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P+E   L D +G EFE  YE YER     E KV + I A  LW  +L    ETG P
Sbjct: 351 SLLCPNECPGLADCFGDEFEALYERYER-----EGKVRQTIKAQQLWFAILDSQVETGTP 405

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--- 616
           ++ FKD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL SI+L       Q+   
Sbjct: 406 YMLFKDHCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEAAVCNLASISLSKLVVPGQYGQG 465

Query: 617 ---DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              D++KL        + L+ +ID N + IE+A++SN  HR IG+G+ G      +L IP
Sbjct: 466 GSFDFEKLREVSGVVTKNLNRIIDRNFYPIEEARRSNMRHRPIGIGVQGLADCFQMLRIP 525

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++  +  E I F A +AS +LA   G Y S+ GS   +G    D         
Sbjct: 526 FDSPEARKLNTDIFETIYFGACTASCDLAAVDGHYESYPGSPSSKGQLQFDLWN------ 579

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +  ++R  W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y + 
Sbjct: 580 ----VQPSNRWDWASLKAKIAEHGIRNSLLVAPMPTASTAQILGNNESTEPFTSNMYNRR 635

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+FTVVN  L+ EL  R +W E + + +   +GSI N+  IP ++++I  T +EI  
Sbjct: 636 VLAGEFTVVNKHLLRELTARGIWTENVRNRIIAENGSIQNVPEIPVEIREIFKTVWEIPQ 695

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +I Q+QSLN+++ +P+ KKL  ++  AW  GLKT  YYLR+R      
Sbjct: 696 RAILDMAADRAPYICQSQSLNVHIADPNSKKLTSMHFYAWQKGLKTGMYYLRTRPKADAI 755

Query: 913 KSTLKGVDGKLNAVP--------------VTDPNSSTHSLGIPSSCTSDTE--CEVC 953
           K T+       N +                  P  +T   G     T D E  C  C
Sbjct: 756 KFTVDQEQLVSNKMKEVKLVDKENSSNMVTPPPPGATAMKGTQGLTTEDEEDMCLSC 812


>gi|322696603|gb|EFY88393.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           acridum CQMa 102]
          Length = 905

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/809 (35%), Positives = 437/809 (54%), Gaps = 33/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNERA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 113 SPMISKDTYECVMRHKDELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E+    +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + 
Sbjct: 173 RVAVGIWGDNIERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YER     E K  R + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYER-----EGKGRRTVRAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A    N  ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYNEGRYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A+ SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNYYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS+ELA+E+G YS+FKGS   +G+   D   +          
Sbjct: 525 ARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW +AM + +   +GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +PS  K+  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                +    V              +   
Sbjct: 755 QEALMVADANVGKDRLPKKRTAPAGTSYM 783


>gi|190346673|gb|EDK38820.2| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/798 (34%), Positives = 429/798 (53%), Gaps = 35/798 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +  ++        LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVSKE--------LYDYINPKTDLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + ++RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + EK    +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGDDIEKV---IESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +RG GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EF+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L ++YG EFE  YE YER     E +    I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLPEVYGDEFEALYEKYER-----EGRGRSTIKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L     +   +  +
Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +T    L+ +ID N + + +A++SN  +R I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHEVTKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELAQ+ G Y S++GS   QG+   D            
Sbjct: 525 QEAKELNIQIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    LW+++M +++  ++GSI N+  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGVDGKLNAVPVTDPNS 933
           +           V     
Sbjct: 755 VDSSTSVNAGKTVATLEK 772


>gi|189501949|ref|YP_001957666.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497390|gb|ACE05937.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 790

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/815 (35%), Positives = 443/815 (54%), Gaps = 33/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    ++   +E+ C+GL    ++   +  +    +YD ++  +L+   
Sbjct: 1   MLVVKRDGRYESVKFDKITARIEKLCTGLNTDYINPVDIAMKVIAGIYDKVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + ++  K P+Y  + AR  +  L +           ++  + M+ LY     +  E 
Sbjct: 61  AEIAASMATKHPDYTVLAARIAVSNLHK--------VTSESFSNTMKWLYTYIDPKTGEN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L   + Y+RD+ ++Y G + L   Y L ING  +E PQ   M
Sbjct: 113 ASLIASDVYKVIREHAALLDKTIVYKRDYDYDYFGFKTLERSYLLKINGKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  + A++ Y+LLS   F  +TPTLFN+GT  PQLSSCFL T+  D + 
Sbjct: 173 RVAVGIH---KEDIEAAIQTYHLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A +++ +GG+G     +R  G++I GTNG S G++P L+  + TA  V+QG
Sbjct: 230 GIYDTLKQCAQISQSAGGIGLSIHNIRATGSYIKGTNGISNGIVPMLRNFDMTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG+   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  N  W+
Sbjct: 290 GGRRKGSFAIYLEPWHSDIFEFLDLRKNHGKEELRARDLFYALWIPDLFMQRVENNEEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D YG+EFE  Y+ YER     E K  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPNESPGLADCYGEEFERLYKKYER-----EGKARKSVKAQELWFAILEAQIETGMPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619
           + +KD  N +S QQ++G + SSNLCTEI   +S EE AVCNL SI L        +FD+ 
Sbjct: 405 MLYKDSANRKSNQQNLGTIKSSNLCTEIIEFTSPEEVAVCNLASIALPKFINQAGKFDHQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL        + L+ +IDIN + + +A+ SN  HR IG+G+ G       L +P+ SPEA
Sbjct: 465 KLYEITYVITKNLNKIIDINHYPVPEARTSNFRHRPIGIGVQGLADTFLRLRMPFDSPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I F A++AS +LA++ G Y +FKGS   +G+F  D  G+           
Sbjct: 525 RGLNKDIFETIYFAAMTASKDLAKQYGPYETFKGSPISKGIFQFDMWGVEP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            + R  W+ L+K V+  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F
Sbjct: 576 SSGRWDWETLRKEVQLHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEF 635

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L    LWDE M ++L   +GS+  I+RIP  +K++H T +EI    +I+ 
Sbjct: 636 IVVNKHLLTDLINLGLWDENMKNELIAANGSVQRIDRIPQHIKELHRTVWEIPQKAIIDM 695

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +I Q+QS+N++L + +  KL  ++  AW  GLKT  YYLR+R A    K TL+ 
Sbjct: 696 AADRGAFICQSQSMNIHLLDANFAKLTSMHFYAWKKGLKTGLYYLRTRPAADAIKFTLQK 755

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               LN +PV         + +        +C VC
Sbjct: 756 EQA-LNDIPV-PQKKVEQQVSMVCDAEDSEDCLVC 788


>gi|260947674|ref|XP_002618134.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
 gi|238848006|gb|EEQ37470.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/798 (33%), Positives = 430/798 (53%), Gaps = 35/798 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   ++  C GL    V +  V       +Y G++  +L+   
Sbjct: 1   MFVIKRDGHKEPVRFDKITARIQRLCYGLDSDHVDAVAVTQRVISGVYHGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +          + LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVA--------KILYEYINPKTDLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 113 SPMISEETYKIICENADELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + E+    +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAVGIHGNDIERV---IETYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  YE YER     E +    + A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEFEALYEKYER-----EGRGRSTVKAQKLWYSILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L        +++ +
Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDASSSWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +   R L+ +ID N + +E+A++SN  +R I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHEVTKVVTRNLNRIIDRNFYPVEEARRSNMRNRPIALGVQGLADAFMSLRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELAQE G Y +++GS   +G+   D            
Sbjct: 525 QEAKELNIQIFETIYHAAVEASIELAQEEGPYETYEGSPASKGLLQYDLWDRKPSEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQNLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  ++ +L    +W++ M +++  ++GSI ++  +PD++K+++ T +EI    +
Sbjct: 635 GEFQIVNPHMLKDLVDLGIWNDNMKNNIIANNGSIQSLPNVPDEIKRLYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGVDGKLNAVPVTDPNS 933
           +           +     
Sbjct: 755 VDQNSASAAGKTIASLEK 772


>gi|319953270|ref|YP_004164537.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           algicola DSM 14237]
 gi|319421930|gb|ADV49039.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           algicola DSM 14237]
          Length = 825

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/800 (36%), Positives = 441/800 (55%), Gaps = 27/800 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V     + +YDG++ S+L+    
Sbjct: 1   MYVLKRDGRKEPMMFDKITARVRKLCYGLNELVDPIKVSMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             S T+    P++AK+ AR  +  L +    +            M+ LY     R  ++ 
Sbjct: 61  EISATMTTTHPDFAKLAARISVSNLHKNTKKSFADT--------MKDLYEYVNPRNGKKS 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +  +L + + Y RDF ++Y G + L   Y L ING   E PQ   MR
Sbjct: 113 PLLSDEVFKVISENAAFLDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +    +  VE Y L+S   F  +TPTLFNSGT  PQ+SSCFL  + DD + G
Sbjct: 173 VSVGIHLDD---LEAVVETYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAQISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ EFLDL+KN G +  R  D+  A WIPDLFM+RV  N  WTL
Sbjct: 290 GKRKGSFAIYVEPWHADIYEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEEWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  DL   + + FE  Y  YE      E K  + + A  LW K+L    ETG P++
Sbjct: 350 MCPNECPDLFKHHSEVFETMYLKYEA-----ENKGRKTVKARDLWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   R L+ VID N + +++A+ SN  HR IGLG+ G   A  +L +P+ S  A  
Sbjct: 465 FRVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKA 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+E+A+E G YSS++GS   +G F  +  G+  E         +
Sbjct: 525 LNQEIFETLYFAAVTASMEMAKEEGPYSSYEGSPISEGEFQYNLWGIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  WD+L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWDKLRKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LW+E++  +L   +GSI +I+ IP D+K+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVHLGLWNESLKQELMRANGSIQHIDIIPQDIKELYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA    K TL    
Sbjct: 698 QRGYFIDQSQSLNLFMEGANFSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNTK 757

Query: 921 GKLNAVPVTDPNSSTHSLGI 940
            K   V V        +  +
Sbjct: 758 KKEVPVSVAADAEIVAATPV 777


>gi|146418447|ref|XP_001485189.1| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/798 (34%), Positives = 429/798 (53%), Gaps = 35/798 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +  ++        LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVSKE--------LYDYINPKTDLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + ++RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + EK    +E YNL+S  +F   +PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGDDIEKV---IESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +RG GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EF+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L ++YG EFE  YE YER     E +    I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLPEVYGDEFEALYEKYER-----EGRGRSTIKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L     +   +  +
Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +T    L+ +ID N + + +A++SN  +R I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHEVTKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELAQ+ G Y S++GS   QG+   D            
Sbjct: 525 QEAKELNIQIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    LW+++M +++  ++GSI N+  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGVDGKLNAVPVTDPNS 933
           +           V     
Sbjct: 755 VDLSTSVNAGKTVATLEK 772


>gi|328770641|gb|EGF80682.1| hypothetical protein BATDEDRAFT_16482 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 796

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/820 (35%), Positives = 437/820 (53%), Gaps = 37/820 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   + + C GL    V    V  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRRERVAFDKITSRINKLCYGLDMNYVDPAEVAQKVVTGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  K P+YA + AR  +  L +E                MQ LY     +  + 
Sbjct: 61  AETTAYLTTKHPDYAILAARIAISNLHKETKKQFSSV--------MQDLYEYVNPKNNKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +  +   L + + Y+RDF + + G + L   Y L IN    E PQ   M
Sbjct: 113 SPMISKTTFDCILKNADRLNSAIIYDRDFNYNFFGFKTLERSYLLRINRKTAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +    +  +E YNL+S  +F  ++PTLFN+GT +PQ+SSCFL T+ DD + 
Sbjct: 173 RVAVGIHGDD---VEAVIETYNLMSEKYFTHASPTLFNAGTPNPQMSSCFLLTIEDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYSTLKTCAMISKTAGGIGLNVHKIRSSGSYIAGTNGLSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKNTG +  R  D+  A WIPD+FM+RV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D++G EF+  YE YER     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFCPAEAPGLDDVWGDEFDALYEKYER-----EGRARKIIKAQKLWYAILDSQSETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           + +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL S+ L      +      
Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLALPNFVIKDTTGAPV 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+DK+  T + A   L+ +I++N + +E+AK+SN  HR IGLG+ G       + +P+ 
Sbjct: 465 FDFDKMIDTTKIATYNLNKIINLNYYPVEQAKRSNMRHRPIGLGVQGLADTFIKMRMPFD 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA ++  +  E I F A++AS ELA+  G Y ++ GS   +G+   D           
Sbjct: 525 SPEAKKLNIQIFEAIYFAALTASCELAKRDGPYETYSGSPMSKGIIQPDMWN-------- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +  + +  W  L+  +   G+RNS  +A  PTA+ + I G +++ +P   N+Y++  +
Sbjct: 577 --VKVSDQFDWPTLRANIAKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRRVL 634

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F +VN  L+ +L +  LW+E+M + +   +GSI NI  IP  LK I+ T +EI    
Sbjct: 635 SGEFQIVNQHLLKDLTELGLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQKV 694

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QSLN++L E +  KL  ++   W  GLKT  YYLRSR A    K 
Sbjct: 695 IIDMAADRGAFIDQSQSLNIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAIKF 754

Query: 915 TLKGVDGKLNAVPVTDPNSSTHS-LGIPSSCTSDTECEVC 953
           T+        A    +  +S ++   +  S  +   C  C
Sbjct: 755 TVDKQSLTQGAEDKNNVVASVNNMTDMLCSLENRDACMSC 794


>gi|301112881|ref|XP_002998211.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
 gi|262112505|gb|EEY70557.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
          Length = 793

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/816 (33%), Positives = 437/816 (53%), Gaps = 32/816 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   + + C GL    V +  +  +    +Y G++ S+L+   
Sbjct: 1   MYVVKRDGRREDVKFDKITARITKLCYGLNPDYVDAIKISQKVVAGVYPGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++     + P+++K+ AR  +  L +           K     ++  +     +    
Sbjct: 61  AETAAYQSTQHPDFSKLAARIAVSNLHKNT--------NKVFSDNIEVFHKNAHEKTGAA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + ++RDF ++Y G + L   Y   +NG  +E PQ   +
Sbjct: 113 APLIADDVYEIVMQHKDELNSAIIHDRDFEYDYFGFKTLERGYLFRVNGKVVERPQQMIL 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+          A+E Y L+S   F  +TPTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVALGIH---KSDITSALETYELMSQKFFTHATPTLFNAGTPRPQLSSCFLLAMQDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A ++K++GG+G     +R   ++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKQCACISKWAGGIGISMHNIRATNSYIRGTNGSSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH DV EFLDLRKN G++  R  D+  A W+PDLFMKRV  N  W+
Sbjct: 290 GGKRKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANGKWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L++ +G EFE  YE YE      E +  + I+A  LW  +L    ETG P+
Sbjct: 350 LFCPNEAPGLYECWGDEFETLYEKYE-----TEGRARKTINAQQLWFAILDAQIETGVPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S QQ++G + SSNLC E+   +S +E AVCNL S+ L     +  FDY K
Sbjct: 405 MLYKDAANRKSNQQNLGTIRSSNLCCEVMEYTSPDEVAVCNLASVALPKFVEDAVFDYRK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++   R L+ VID+N + + +A+KSN  HR IG+G+ G   A  L++ P+ SP+A 
Sbjct: 465 LYEVVKVITRNLNKVIDVNYYPVAEARKSNMRHRPIGIGVQGLADAFILMNYPFESPQAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+     E I F A+  S+E+A E G Y +F+GS   +G+F  D  G+  +         
Sbjct: 525 ELNKNIFETIYFAAMETSMEIAVELGPYETFQGSPASKGIFQFDMWGVTPQ--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W  LK  V   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  ++G+FT
Sbjct: 576 SGLWNWAALKDDVIKHGLRNSLLVAPMPTASTAQILGNNESIEPYTSNMYNRRVLAGEFT 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  L+ EL +  +W   + + +    GS+  I+ IP+D+K+ + T +EI    +++ +
Sbjct: 636 IVNKHLMKELIELGIWTPEVRNQILNDGGSVQKIKTIPEDVKEKYKTVWEIKQKAVLDLS 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG- 918
           + R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YY+R R      + T+   
Sbjct: 696 ADRGAYICQSQSLNIHIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPKADAIQFTVDKQ 755

Query: 919 -VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +D +      T    +  +  +  +   + EC VC
Sbjct: 756 GIDLQRAKEEATKTAPTPAAETVTRAGDDEDECLVC 791


>gi|225012155|ref|ZP_03702592.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
 gi|225003710|gb|EEG41683.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
          Length = 814

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/835 (34%), Positives = 448/835 (53%), Gaps = 49/835 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   + +   GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MFVLKRDGRKEPIMFDKITARIRKLNYGLNPLVDPVRVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YAK+ AR  +  L +          +K+    M  LY     R  ++ 
Sbjct: 61  EIAATMTTTHPDYAKLAARISVSNLHKNT--------KKSFSETMTDLYKYVNPRTGKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RDF +++ G + L   Y L +NG  +E PQ   MR
Sbjct: 113 PLLSDEVHDIIQKNADKLDSSIIYNRDFGYDFFGFKTLERSYLLKLNGVIVERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L   E  + A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSIGIHL---EDIEAALETYELMSKRYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FL+L+KN G +  R  D+  A W PDLFMKRV +NA WTL
Sbjct: 290 GKRKGSFAIYVEPWHADIFDFLELKKNHGKEEMRARDLFYAMWTPDLFMKRVEENADWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  DL++++G EF+  Y  YE      E +  R I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPDLYNVHGDEFDAMYLKYE-----SEGRGRRTIKARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L     +  FD+  L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKDGAFDHQAL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
                   + L+ VID N + + +A+ SN  HR +GLG+ G   A  +L +P+ S EA +
Sbjct: 465 YDVTVRVTKNLNRVIDRNYYPVIEAQNSNFRHRPVGLGVQGLADAFIMLRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS E A+  G Y ++KGS    G F  +  G+  E         +
Sbjct: 525 LNQEIFETLYFAAVTASSEEAKREGPYETYKGSPIANGEFQHNLWGIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W  L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWAALRKTVKKQGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L  R LW+E M  +L  ++GS+ +IE IP+DLK+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVDRGLWNEDMKQELMRNNGSVQSIEGIPEDLKELYKTVWEMSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK-GV 919
           +R  +IDQ+QSLNL+++  +  KL  ++   W  GLKT  YYLR++SA    K TL    
Sbjct: 698 QRGYFIDQSQSLNLFMEGATMAKLTSMHFYGWKSGLKTGMYYLRTKSAVDAIKFTLDTKS 757

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSC---------------------TSDTECEVC 953
             K+  V       ST + G  +                         D +C +C
Sbjct: 758 KAKVPEVEAAVGAVSTATAGKAAQAPVPVEPLSPQELKQMLAQAKEGEDDDCLMC 812


>gi|116200095|ref|XP_001225859.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
 gi|88179482|gb|EAQ86950.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
          Length = 912

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/809 (35%), Positives = 434/809 (53%), Gaps = 33/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVRKRDGRQERVQFDKITARVSRLCYGLDVDHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSAVVSDLYHYVNPKNERA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 113 SPMIAKETYECVMRHKEELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E+    +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + 
Sbjct: 173 RVAVGIWGDNVERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +L+  AM++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDSLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG EFE  YE YE+       +  + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGDEFEALYEKYEKA-----GRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      NQ  +D+
Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYNQGVYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A  SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 QKLHEVAQVVVRNLNKIIDVNHYPVQEAYNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS +LA+E+G YS+++GS   QG+   D   +          
Sbjct: 525 ARELNKQIFETIYHAALTASCDLAKEQGTYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TGLWDWDALKAKIKEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPTDIKALYKTVWEISQRTVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EPS  K+  ++   W +GLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPSMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               ++    V+   S       P+    
Sbjct: 755 QEALRVQDTNVSKGVSGLKKRAPPAGSYM 783


>gi|298207003|ref|YP_003715182.1| probable ribonucleoside-diphosphate reductase large chain
           [Croceibacter atlanticus HTCC2559]
 gi|83849637|gb|EAP87505.1| probable ribonucleoside-diphosphate reductase large chain
           [Croceibacter atlanticus HTCC2559]
          Length = 840

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/808 (34%), Positives = 444/808 (54%), Gaps = 27/808 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C GL + V    V     + +YDG++ SDL+    
Sbjct: 1   MDVLKRDGRREPVMFDKITARVKKLCYGLNELVDPVKVAMRVIEGLYDGVTTSDLDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YAK+ AR  +  L ++   T  +         M  LY     R  ++ 
Sbjct: 61  ETAASMTVSHPDYAKLAARISVSNLHKDTKKTFSEV--------MTDLYEYVNPRTGKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RD+ ++Y G + L   Y L +NG   E PQ   MR
Sbjct: 113 PLLSDEVYKVIQDNKDRLDSTIIYNRDYGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +      A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSVGIHLDD---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLQVYNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WIPDLFMKRV ++  WTL
Sbjct: 290 GKRKGSFAIYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGNWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  +L +++ +EF+  Y  YE      E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPNLFNVHSEEFDELYLKYE-----SENKGRKTIKARVLWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N  FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGAFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   + L+ VID N + +++A+ SN  HR +GLG+ G   A  +L +P+ S EA  
Sbjct: 465 FRITKRVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKT 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+ELA E G YSS++GS   +G F  +  G+  E         +
Sbjct: 525 LNQEIFETLYFAAVTASMELAIEEGPYSSYEGSPISKGEFQYNLWGIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W  L+++V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWAGLRQKVLENGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LW+  + + +   +GSI NI+ IP DLK+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVNLGLWNNDLKNAIMRANGSIQNIDGIPQDLKELYKTVYELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K T++   
Sbjct: 698 HRGYFIDQSQSLNLFMENANYAKLTSMHFYAWKNGLKTGMYYLRTKAAVDAIKFTVEKAK 757

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                    +  +        +    + 
Sbjct: 758 KAEPQPQQQEVAAKAAETLQQAKTQLEP 785


>gi|73988083|ref|XP_862202.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           4 [Canis familiaris]
          Length = 822

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/841 (34%), Positives = 452/841 (53%), Gaps = 53/841 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQ-------------------------ADRGEIK 535
           L  P+E   L +++G+EFE  YE Y +                          +   + +
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYGKNMKVIIFNHVFLLFGGSKFQNITLPFSYEKQGR 409

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +
Sbjct: 410 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 469

Query: 596 ETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR
Sbjct: 470 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHR 529

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+ AS +LA+E G Y +++GS
Sbjct: 530 PIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGS 589

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D   +                 W  LK+++   G+RNS  +A  PTA+ A 
Sbjct: 590 PVSRGILQYDMWNVTPTEL----------WDWKLLKEKIAKYGVRNSLLIAPMPTASTAQ 639

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW+E M + +   +GSI +I
Sbjct: 640 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSI 699

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W 
Sbjct: 700 PEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 759

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
            GLKT  YYLR+R A +  + TL              +     ++  +  S  +  EC +
Sbjct: 760 QGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCSLENREECLM 819

Query: 953 C 953
           C
Sbjct: 820 C 820


>gi|238882110|gb|EEQ45748.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 854

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/794 (34%), Positives = 423/794 (53%), Gaps = 35/794 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++      K          + LY     +    
Sbjct: 61  AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVS--------KDLYEYINPKTGLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +  +    +E YNL+S   F   +P LFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAVGIHGNDIPRV---IETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE+     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTKYEK-----ENRGRQTIKAQKLWYAILGAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN +S Q+++G++ SSNLC EI   S+ +E AVCNL SI L         +  +
Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELA+E GAY ++ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+ +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LKGVDGKLNAVPVT 929
           +     +     V 
Sbjct: 755 IDQKIAETAGHTVA 768


>gi|68481362|ref|XP_715320.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
 gi|68481493|ref|XP_715255.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|7271006|emb|CAB77640.1| ribonucleotide reductase large subunit [Candida albicans]
 gi|46436871|gb|EAK96226.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|46436939|gb|EAK96293.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
          Length = 854

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/794 (34%), Positives = 423/794 (53%), Gaps = 35/794 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++      K          + LY     +    
Sbjct: 61  AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVS--------KDLYEYINPKTGLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +  +    +E YNL+S   F   +P LFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAVGIHGNDIPRV---IETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE+     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTKYEK-----ENRGRQTIKAQKLWYAILGAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN +S Q+++G++ SSNLC EI   S+ +E AVCNL SI L         +  +
Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELA+E GAY ++ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+ +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LKGVDGKLNAVPVT 929
           +     +     V 
Sbjct: 755 IDQKIAETAGHTVA 768


>gi|126662514|ref|ZP_01733513.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
 gi|126625893|gb|EAZ96582.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
          Length = 810

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/831 (35%), Positives = 466/831 (56%), Gaps = 45/831 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   +++ C GL D V +  V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGHKEPVMFDKITDRIKKLCYGLNDMVDAVKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YA++ AR  +  L +           K+    M  +Y     R  +E 
Sbjct: 61  ETAASMTVSHPDYAQLAARIAISNLHKNT--------NKSFSETMNEMYHYVNPRTNQEA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +  +L + + Y RDF ++Y G + L   Y L ING  +E PQ   MR
Sbjct: 113 PLISDEVYEVIKANAEFLDSHIIYTRDFNYDYFGFKTLERSYLLRINGKIVERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ + +    +  +E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSVGIHMND---LEAVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLAIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   YLETWH D+ EFLDL+KNTG +  R  D+  A W  DLFMKRV ++A WTL
Sbjct: 290 GKRKGSFAIYLETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  DL ++YG EFE  Y +YE      + K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPDLDNVYGDEFEALYTSYEA-----KGKGRKTIRARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI+L     N +F+++ L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASISLPMFVENGKFNHELL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +  +   R L+ VID N + +++A+ SN  HR +GLG+ G   A  ++ +P+ S EA +
Sbjct: 465 FTVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMMRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+E+A+E G YS+F+GS   +G F  +   +  E         +
Sbjct: 525 VNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPISKGEFQHNLWNIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWASLRKEVMANGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+++L  R LW+E +  ++  H+GS+ +I+RIP DLK+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLHDLVDRGLWNETLKQEIMRHNGSVQHIDRIPADLKELYKTVWEMSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL++ + +  KL  ++  AW  GLKT  YYLR+++A    K TL    
Sbjct: 698 QRGYFIDQSQSLNLFMQDANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNDK 757

Query: 921 -------------GKLNAVPVTDPNSSTHSLGIPSSCTS-----DTECEVC 953
                         K+ A+ V +  S   +    +           +CE+C
Sbjct: 758 VAAPIEVKPQTEVKKVEAIAVLEEPSEMTAEEYRAMVEMARNAGPEDCEMC 808


>gi|320582719|gb|EFW96936.1| Ribonucleoside-diphosphate reductase large chain 1 [Pichia angusta
           DL-1]
          Length = 862

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/807 (33%), Positives = 428/807 (53%), Gaps = 35/807 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   V   C GL    V    +       +Y G++  +L+   
Sbjct: 1   MYVLKRDGRKEPVRFDKITARVSRLCYGLDPEHVEPVAITQRVISGVYHGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +   +        LY     +  + 
Sbjct: 61  AETAAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVDQ--------LYHYINPKNGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF++ Y G + L   Y L I+G   E PQ   M
Sbjct: 113 SPMISDETYRIVQEHADELNSAIVYDRDFSYNYFGFKTLERSYLLKIDGKVAERPQHMVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +       +E YNL+S   F  ++PTLFN+GT HPQ+SSCFL  + DD + 
Sbjct: 173 RVAIGIHGDDIPSV---IETYNLMSQKFFTHASPTLFNAGTPHPQMSSCFLVAMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKAAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   Y+E WH D+ +F+D+RKN G +  R  D+  A WIPDLFM+RV QNA WT
Sbjct: 290 GNKRPGAFALYVEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEQNAEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L D+YG EF+  Y  YE+     E +  + + A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLADVYGDEFKELYTRYEK-----EGRGRQTVKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616
           + +KD CN ++ Q+++G++ SSNLC EI   SS EE AVCNL SI L A   ++     +
Sbjct: 405 MLYKDACNSKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPAFVESDDNTSWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   + L+ +ID N + + +A++SN  +R I +G+ G       L +P+ S
Sbjct: 465 NFEKLHQITKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIAVGVQGLADVFMQLRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA E+  +  E I   A+ AS ELA   G Y +F+GS   QG+   D  G         
Sbjct: 525 PEARELNIQIFETIYHGALEASAELAVRDGKYETFEGSPASQGILQFDLWGKKP------ 578

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T    WD LK R++  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 579 ----TDLWDWDSLKARIQKDGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    LW+++M + +   +GS+ N+  +P +LK ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVNLGLWNDSMKNFIIKDNGSVQNLPNVPQELKDLYRTVWEIPQKSI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QS+N++L  P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRGAYIDQSQSMNIHLKNPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +        +  V   N       +P 
Sbjct: 755 VDQKSAATASSTVASLNKLKLKKYVPR 781


>gi|225011000|ref|ZP_03701466.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
 gi|225004907|gb|EEG42863.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
          Length = 827

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/803 (35%), Positives = 440/803 (54%), Gaps = 27/803 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V     + +YDG++ S+L+    
Sbjct: 1   MYVLKRDGKNEPMMFDKITARVRKLCYGLNERVDPVKVSLRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P++AK+ AR  +  L +          +K+    M+ LY     R  +  
Sbjct: 61  EIAATMTTTHPDFAKLAARISVSNLHKNT--------KKSFSETMEDLYKYVNPRNGKSS 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                     +  +   L + + Y RDF ++Y G + L   Y L +NG  +E PQ   MR
Sbjct: 113 PLLSDEVYQAIMDNAELLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+          A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + G
Sbjct: 173 VSVGIH---PTDMDSAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S GV+P LKV NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGVVPMLKVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WIPDLFMKRV  NA WTL
Sbjct: 290 GKRKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAEWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  +L + + + F+  Y  YE      E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPNLFNNHSEAFDELYLKYE-----SEGKGRKTIKARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     +  FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKDGAFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   + L+ VID N + +++A+ SN  HR IGLG+ G   A  +L +P+ S EA +
Sbjct: 465 FKVTKRVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           + +E  E + F A++AS+E A+  G Y S+KGS   QG F  +  G+  E         +
Sbjct: 525 LNEEIFETLYFAALTASMEEAKADGPYQSYKGSPISQGEFQHNLWGIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W +L+K VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWAKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LWDE +  +L   +GS+ +I+ IP D+K+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVALGLWDEGLKQELMRANGSVQHIDIIPQDIKELYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K TL    
Sbjct: 698 QRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTA 757

Query: 921 GKLNAVPVTDPNSSTHSLGIPSS 943
            K   V V        +  + + 
Sbjct: 758 KKDVPVSVAAEAEVAAATPVKAV 780


>gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex]
          Length = 798

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/822 (35%), Positives = 442/822 (53%), Gaps = 39/822 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G     +  ++   +++ C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVLKRGGRQEDVHFDKITSRIQKLCYGLNSDFVDPTAITMKVINGLYPGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +E         +K     +  LY        + 
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKET--------KKVFSEVIDDLYNMKNKITKKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H  ++      L + + Y+RDF F Y G + L   Y L I+G  +E PQ   M
Sbjct: 113 TPMISDFHHGIITKHSDKLNSAIIYDRDFNFNYFGFKTLEKSYLLKIDGKPVERPQHLMM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLF + T  PQLSSCFL T+ DD + 
Sbjct: 173 RVSVGIHG---EDIDAAIETYNLLSEKWFTHASPTLFYAATPRPQLSSCFLLTMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYETLKQCAIISKSAGGIGLNVHCIRATGSYIAGTNGISNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDL+KNTG +  R  D+  A WIPDLFM+RV  +  W+
Sbjct: 290 GNKRPGAFAIYLEPWHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D +G+EFE  Y  YE           RK+ A  LW  ++    ETG P+
Sbjct: 350 LMCPHECPGLADTWGEEFEALYTKYEESGM-----YRRKVKAQQLWFAVIESQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619
           I +KD CN +S QQ++G +  SNLCTEI   SS EE AVCNLGSI L      ++ FD  
Sbjct: 405 ILYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKPDKTFDIP 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R L+ +I+IN + + +AK+SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLKEVTKVLTRNLNKIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +     E I + A+ AS ELA++ G Y S+ G    +G+   D  G+           
Sbjct: 525 QLLNKHIFETIYYGALEASCELAEQLGTYESYPGCPVSKGILQYDMWGVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LKK++   G+RNS  +A  PTA+ A I G ++SI+    N+YV+  +SG+F
Sbjct: 576 -TDLWDWAALKKKINEHGLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +  LW+E + + +  ++GSI NI+ IPDDLK ++ T +EI    +I+ 
Sbjct: 635 QVVNHHLLRDLTEGGLWNEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++  +W +GLKT  YYLR++ A S  + T+  
Sbjct: 695 AADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAASAIQFTVDK 754

Query: 919 VD-GKLNAVPVTD------PNSSTHSLGIPSSCTSDTECEVC 953
               K+N V  +            +   +  S  +  +C +C
Sbjct: 755 SKLKKMNGVDNSAGATNGNDEEKRNREAMVCSLQNRDDCLMC 796


>gi|307103606|gb|EFN51865.1| hypothetical protein CHLNCDRAFT_32953 [Chlorella variabilis]
          Length = 810

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/835 (34%), Positives = 448/835 (53%), Gaps = 53/835 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G L   +  ++   + +   GL        +V  +    +Y G++ S+L+   
Sbjct: 1   MYVVKRSGVLAPVSFDKITARISKLSYGLNPDFCDPVLVAQKVTTGVYKGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +L    P+YA + AR  +  L +  L +  +  +    H           +  E+
Sbjct: 61  AETAASLTATHPDYALLAARIAVSNLHKNTLKSFSETVKLMFSH--------VNPKNGEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 113 APLIDEKVYEIIMEHAERLDSEIVYDRDFDYDYFGFKTLERSYMLRVNGRVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+ L   E    AVE Y+LLS   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVAVGIHL---EDVDAAVETYHLLSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKNDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECASISKSAGGIGLSMHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   Y E WH D+ ++LDLRKN G +  R  D+  A WIPDLFM RV  N  W+
Sbjct: 290 GGKRKGAFAMYCEPWHADIFDWLDLRKNHGKEEARARDLFYALWIPDLFMHRVEANGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G+EFE  Y  YER     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNESPGLADCWGEEFEALYSRYER-----EGRARKVIKAQQLWFAILEAQVETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------- 613
           + +KD  N +S QQ++G + SSNLCTEI   SS EETAVCNL S+ L             
Sbjct: 405 MLYKDSANRKSNQQNLGTIKSSNLCTEIIEYSSPEETAVCNLASVALPRFVREKEPSGRE 464

Query: 614 ------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                         FD+DKLA     A R L+ +ID+N + +E A++SN  HR IGLG+ 
Sbjct: 465 GKKLVGSLDAEGRYFDFDKLAEVTAVATRNLNKIIDVNYYPVETARRSNMRHRPIGLGVQ 524

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      LL +P+ SPEA E+  +  E I F A+  S++L++  G YS+++GS   +G+ 
Sbjct: 525 GLADTFLLLGLPFDSPEAAELNRQIFETIYFAALRTSMQLSKAEGPYSTYEGSPVSKGIL 584

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D  G          +  + R  WD L++ +   G+RNS  +A  PTA+ + I G ++ 
Sbjct: 585 QPDMWG----------VKPSDRWDWDGLRRDIAQNGVRNSLLVAPMPTASTSQILGNNEC 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+YV+  +SG+F VVN  L+++L +  LWD  + +++    GS+ +++ IP++L
Sbjct: 635 FEPYTSNIYVRRVLSGEFVVVNQHLLHDLTRLGLWDTDVKNEIVAASGSVADLD-IPNNL 693

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K+++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GLKT  
Sbjct: 694 KELYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDPNFGKLTSLHFYAWKKGLKTGM 753

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVC 953
           YYLRSR+A    K T+     +         +  +++    +  S  +   C +C
Sbjct: 754 YYLRSRAAADAIKFTVDQQALQRRKSERLAKENKATSDMAAMVCSLENKDACVMC 808


>gi|70994760|ref|XP_752157.1| ribonucleotide reductase large subunit Rnr1 [Aspergillus fumigatus
           Af293]
 gi|66849791|gb|EAL90119.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           fumigatus Af293]
 gi|159124928|gb|EDP50045.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           fumigatus A1163]
          Length = 859

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/806 (34%), Positives = 430/806 (53%), Gaps = 33/806 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNKQP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L ING   E PQ   M
Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+        ++A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVAVGIHGN---NIEKAIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EF+  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFDALYERYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +ID+N + + +AKKSN  HR I LG+ G   A   L +P+ S E
Sbjct: 465 GKLHEVVQVLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS ELA+E G Y +++GS   QG+   D              
Sbjct: 525 ARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKAKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943
               K+    V   N++       S 
Sbjct: 755 QEQLKVADTNVARANAAYKKRAAGSV 780


>gi|308501413|ref|XP_003112891.1| CRE-RNR-1 protein [Caenorhabditis remanei]
 gi|308265192|gb|EFP09145.1| CRE-RNR-1 protein [Caenorhabditis remanei]
          Length = 786

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/818 (34%), Positives = 441/818 (53%), Gaps = 43/818 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE 199
                ++  DG +   +  ++   +++   GL  + V    V  +    +Y G++  +L+
Sbjct: 4   HNSTYVVKRDGRMEDVHFDKITSRIQKLSYGLNMEFVDPVAVAIKVISGLYKGVTTVELD 63

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
                ++ ++  + P YA + AR  +  L ++          K     M+ L+  +    
Sbjct: 64  NLAAETAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPHT 115

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +          ++++ +   L + + Y+RD+++ Y G + L   Y L IN   +E PQ 
Sbjct: 116 GKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQ 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRV++G+     E    A+E YNL+S  +   ++PTLFNSGT  PQ+SSCFL T+  D
Sbjct: 176 MLMRVSIGIHG---EDIAAAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSED 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G +   +R  G+ I GTNG S G+IP L+V N+TA  V
Sbjct: 233 SILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYV 292

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH DV EF+ LRKNTG +  R  D+  A WIPDLFMKRV ++ 
Sbjct: 293 DQGGNKRPGAFAIYLEPWHADVFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQ 352

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L D +G+EFE  Y  YE      E +V + + A  LW  +++   ETG
Sbjct: 353 NWSLMCPCECPGLDDCWGEEFEALYAKYEA-----EGRVRKTVKARKLWEHIVSNQIETG 407

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQF 616
            P+IT+KD  N +S QQ++G +  SNLCTEI   S+ +E AVCNL SI L  +     +F
Sbjct: 408 LPYITYKDAANRKSNQQNLGTIKCSNLCTEIMEYSAPDEIAVCNLASIALNRYVTPEKKF 467

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KLA   +   + L+ +ID+N + +E+A+ SN  HR IGLG+ G      L+  P+ S
Sbjct: 468 DFKKLAEVTKVITKNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTS 527

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A ++     E I + A+ AS ELA+  G YS+++GS   +G    D  G+        
Sbjct: 528 KQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTP------ 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               T +  W  L+K++ T G+RNS  MA  PTA+ A I G ++SI+P   N+Y +  +S
Sbjct: 582 ----TDQCDWAALRKKIATHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLS 637

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF +VN  ++ +L +R LW + M + L  ++GSI NI  IP D+K+++ T +EI    +
Sbjct: 638 GDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPEIPADIKELYLTVWEISQKEI 697

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           IE A+ R  +IDQ+QSLN+++ +PS   +  ++   W  GLKT  YYLR++ A +  + T
Sbjct: 698 IEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKQGLKTGMYYLRTKPAVNAVQFT 757

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     K    P                   D  C +C
Sbjct: 758 VDKGALKAKVDPKVAALQQQ-----------DEGCLMC 784


>gi|85081938|ref|XP_956818.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
 gi|30316299|sp|Q9UW15|RIR1_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|11256439|pir||T51069 ribonucleoside-diphosphate reductase large chain (un-24gene)
           [imported] - Neurospora crassa
 gi|9368573|emb|CAB98233.1| ribonucleoside-diphosphate reductase large chain (un-24)
           [Neurospora crassa]
 gi|28917896|gb|EAA27582.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
          Length = 929

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/805 (34%), Positives = 430/805 (53%), Gaps = 33/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     R  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------ISELYNYVNPRTGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D+YG EFE  YE YE+     E K  + + A  LW  +L    ETG+P+
Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A        +D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ S  
Sbjct: 465 KKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDA 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA+E+G Y++++GS   QG+   D   +          
Sbjct: 525 ASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVK 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942
               +     V   +S       P+
Sbjct: 755 QEALRATDDRVAPAHSGLKKRSPPA 779


>gi|5733808|gb|AAD49743.1| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 929

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/805 (34%), Positives = 430/805 (53%), Gaps = 33/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     R  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------ISELYNYVNPRTGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D+YG EFE  YE YE+     E K  + + A  LW  +L    ETG+P+
Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A        +D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ S  
Sbjct: 465 KKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDA 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA+E+G Y++++GS   QG+   D   +          
Sbjct: 525 ASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVK 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942
               +     V   +S       P+
Sbjct: 755 QEALRATDDRVAPAHSGLKKRSPPA 779


>gi|303273186|ref|XP_003055954.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462038|gb|EEH59330.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 816

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/840 (34%), Positives = 442/840 (52%), Gaps = 57/840 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +  ++   + +   GL        +V  +    +Y G++ S+L+   
Sbjct: 1   MYVVKRDGRQEPVHFDKITARINKLAYGLNQDHCDPVLVAQKVASGVYKGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA++ AR  +  L +  L +  +         M+ ++     R  + 
Sbjct: 61  AETAASMTSKHPDYAQLAARIAVSNLHKNTLKSFSET--------MKVMHEHVNKRNGKW 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +      ++ Y+RDF ++Y G + L   Y L ++G  +E PQ   M
Sbjct: 113 SPLLADDVYEIIKANAATFDAEIVYDRDFDYDYFGYKTLERSYLLRVDGKIVERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+        ++A++ Y++LS      ++PTLFNSGT  PQLSSCFL  +  D + 
Sbjct: 173 RVAIGIHK----DVEKAIDTYHMLSERWMTHASPTLFNSGTPRPQLSSCFLIAMKEDSIE 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A ++K +GG+G     +R   ++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 229 GIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ ++LDLRKN G +  R  D+    W  DLFM+RV  N  WT
Sbjct: 289 GGKRKGAFAVYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMRRVESNGDWT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D +G EFE  Y +YE Q      K  + I A  LW  +L    ETG+P+
Sbjct: 349 LMCPNECPGLADSWGAEFEKLYTSYEEQ-----GKGKKTIKAQQLWFAILEAQVETGNPY 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           + FKD CN +S QQ++G + SSNLCTEI   +S EETAVCNL SI L             
Sbjct: 404 MLFKDACNSKSNQQNLGTIRSSNLCTEIVEFTSPEETAVCNLASIALPRFVVEENPASPT 463

Query: 616 ------------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                             FD+ KLA   R   R L+ +ID+N + +E A++SN  HR IG
Sbjct: 464 GRTEAKKLRGSLGAASRTFDHAKLAEITRKVTRNLNRIIDVNYYPVETARRSNMRHRPIG 523

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G      LL + + SPEA ++  E  E I F A++ S  +A   G Y ++ GS   
Sbjct: 524 LGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNAIAAVDGHYETYPGSPVS 583

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  G+         M    R  W  L+ ++ T G+RNS  +A  PTA+ + I G
Sbjct: 584 KGILQPDMWGVT-------EMPGGDRHDWAALRAKIATSGVRNSLLVAPMPTASTSQILG 636

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+FTVVN  L+N+L +  LWD  + ++L  ++GS+  ++ I
Sbjct: 637 NNECFEPYTSNIYARRVLSGEFTVVNQHLLNDLTELGLWDPKLKNELIANNGSVQGLD-I 695

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PD LK I+ T +EI    L++ A+ R  +IDQ+QS N+++ + +  KL  ++  AW  GL
Sbjct: 696 PDHLKAIYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKGL 755

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+    GK NA    DP+       +  +  S  +  EC +C
Sbjct: 756 KTGMYYLRSRAAADAVKFTVDQA-GKGNAQKSADPDMEEEARMAAKLACSLANKDECVMC 814


>gi|241951096|ref|XP_002418270.1| ribonucleoside-diphosphate reductase large chain 1, putative;
           ribonucleotide reductase large subunit 1, putative;
           ribonucleotide reductase r1 subunit 1, putative [Candida
           dubliniensis CD36]
 gi|223641609|emb|CAX43570.1| ribonucleoside-diphosphate reductase large chain 1, putative
           [Candida dubliniensis CD36]
          Length = 854

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/784 (35%), Positives = 424/784 (54%), Gaps = 35/784 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++      K          + LY     +    
Sbjct: 61  AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVS--------KDLYEYINPKTGLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFSYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +  +    +E YNL+S   F   +P LFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAVGIHGNDIPRV---IETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE+     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTRYEK-----ENRGRQTIKAQKLWYAILGAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN +S Q+++G++ SSNLC EI   S+ +E AVCNL SI L     +  +N  +
Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVESDQSNTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++DKL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFDKLHDVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ ASVELA+E GAY ++ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASVELAKEEGAYETYPGSPASQGLLQFDLWNRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+ +   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQNLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LKGV 919
           +   
Sbjct: 755 IDQK 758


>gi|39978231|ref|XP_370503.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15]
 gi|145013418|gb|EDJ98059.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15]
          Length = 909

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/811 (34%), Positives = 432/811 (53%), Gaps = 33/811 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDPEHVDPVAITQKVISGVYGGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++             H+           +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSVVSDLFHY--------VNPKNGKL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 113 SPMIAQDTYDCVMRHKEDLDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E+    +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + 
Sbjct: 173 RVAVGIWGDNIERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YE+       K  + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEQA-----GKGRKTIKAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L      ++  +D+
Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYHKGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL    +  VR L+ +I++N + +++A+ SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 EKLHEVTQVVVRNLNKIIEVNYYPVQEARNSNMRHRPIGLGVQGLADAFLALRLPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA+E+G YS+++GS   QG+   D             +
Sbjct: 525 ARDLNKKIFETIYHAALTASCKLAEEQGPYSTYEGSPVSQGILQYDMWN----------V 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 575 KPSDLWDWDALKANIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L +  LW + M + +    GSI NI  IP+D KK++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVELGLWSDDMKNRIIAEGGSIQNIASIPEDTKKLYKTVWEISQRTVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
               +L    V              S  S  
Sbjct: 755 QEALRLQDKAVAKERVLGKRAPPTGSYMSSP 785


>gi|148224574|ref|NP_001084312.1| ribonucleotide reductase M1 [Xenopus laevis]
 gi|49256098|gb|AAH74185.1| RRM1 protein [Xenopus laevis]
          Length = 797

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/821 (34%), Positives = 445/821 (54%), Gaps = 38/821 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL  + V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARVAVSNLHKET--------KKIFSDVMEDLYNYVNPLNSKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ + G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+          A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KTDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDL+KNTG + +R  D+  A WIPDLFMKR   N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRAENNLDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L +++G +FE  YE YER     E +  + + A  +W  ++    ETG P+
Sbjct: 350 LMCPHECPGLEEVWGDKFEELYEKYER-----EGRTRKVVKAQQVWHAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + FD+ 
Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S +A
Sbjct: 465 KLADVTKVIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ +S ELA+E G Y +++G    +G+   D   +           
Sbjct: 525 QMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L ++ LW+E M + +  ++GSI N+  IP DLK+++ T +EI    +I  
Sbjct: 635 QIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VDGK------LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K      +            +   +  S  +  EC +C
Sbjct: 755 EKLKEKELITMETTEKDKEEKEKNKAAMVCSLENRDECLMC 795


>gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans]
 gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans]
          Length = 812

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/835 (35%), Positives = 443/835 (53%), Gaps = 42/835 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192
            K+ +    KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G
Sbjct: 2   LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+      +  L    P+YA + AR  +  L +E         +KA     + LY
Sbjct: 62  VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLY 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                   ++       H +++  +   L + + Y+RDF + Y G + L   Y L  NG 
Sbjct: 114 NHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T  PQLSSCF
Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V 
Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+ A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFM
Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  N  W+L  P +   LH+++G EFE  YE YE+     E +  R + A +LW  ++
Sbjct: 351 KRVEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L   
Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMF 465

Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L
Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  PY S EA  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +
Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKV 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+
Sbjct: 586 P----------TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +
Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVW 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A
Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755

Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953
            +  + T+    G +     N      P     +       +  S  +   C  C
Sbjct: 756 ANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810


>gi|320593756|gb|EFX06165.1| ribonucleotide reductase large subunit [Grosmannia clavigera
           kw1407]
          Length = 913

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/803 (34%), Positives = 427/803 (53%), Gaps = 33/803 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    +    +  +    +Y G++ + L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHIDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     R    
Sbjct: 61  AETAAYMTVTHPDYAVLAARIAVSNLHKQT--------KKQWSAVITDLYNYVNPRNNTL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 113 SPMISKETYDCVMRHKEDFDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E+    VE YN +S+  F  ++PTLFN+GT   Q+SSCFL  + DD + 
Sbjct: 173 RVAVGIWGDNVERV---VETYNYMSNKFFTHASPTLFNAGTPQAQMSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA C YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFCIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   + D YG+EFE  YE YER     E +  + + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGMADCYGEEFEALYEKYER-----EGRGRKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L     + N  +D+
Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPSFVDYTNETYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L++VID+N + + +AK SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVAQLVVRNLNHVIDVNYYPVPEAKNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++AS ELA+  G YS+++GS   QG+   D             +
Sbjct: 525 ARELNKQIFETIYHAALTASCELAKIEGTYSTYEGSPVSQGILQPDMW----------DV 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD L+ ++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 575 KPSDLWDWDSLRLKIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGI 940
                +                 
Sbjct: 755 QQALLVADTNSGRERGLRKRAPP 777


>gi|289621907|emb|CBI61238.1| putative heterokaryon incompatibility protein [Sordaria macrospora]
          Length = 937

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/805 (34%), Positives = 429/805 (53%), Gaps = 33/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------INELYNYVNPKTGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMIAKDTYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S   F  ++PTLFN+GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKR+ QN  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRIEQNGTWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D+YG EFE  YE YE+     E K  + + A  LW  +L    ETG+P+
Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A   + N  +D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALAAFVDYENASYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + + +A  SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNHYPVMEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA+E+G YS+++GS   QG+   D   +          
Sbjct: 525 ARKLNIQIFETIYHAALTASCQLAKEQGTYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             ++   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SNLWDWAALKADIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L +  LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLRDLVEMGLWSDNMKNRIIAEGGSIQNIASIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942
               K     V   +S       P+
Sbjct: 755 QEALKATDDQVAPAHSGLKKRAPPA 779


>gi|119501198|ref|XP_001267356.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415521|gb|EAW25459.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 859

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/808 (34%), Positives = 431/808 (53%), Gaps = 33/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNKQP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L ING   E PQ   M
Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+        ++A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVAVGIHGN---NIEKAIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EF+  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFDALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +ID+N + + +AKKSN  HR I LG+ G   A   L +P+ S E
Sbjct: 465 GKLHEVVQVLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS ELA+E G Y +++GS   QG+   D              
Sbjct: 525 ARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKTKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
               K+    V   N++       S  T
Sbjct: 755 QEQLKVADTNVARANAAYKKRAAGSVST 782


>gi|301166950|emb|CBW26529.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha
           [Bacteriovorax marinus SJ]
          Length = 785

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/816 (35%), Positives = 445/816 (54%), Gaps = 40/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G        ++   +E     L    +   ++ S+  + ++DG+S  +L+   
Sbjct: 1   MYVITRSGEREPIKFDKITERIESLAFDLDKEFIDPSLITSKVIEGIFDGISTPELDKLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  + P+Y+K+  R  +  L +E      +         ++ +Y        E 
Sbjct: 61  GETAAYLSTQHPDYSKLAGRIAVSNLHKETRGCFSEN--------IKEMYNYVNPATGEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L   +  +RDF ++Y G + L   Y L ++G   E P    M
Sbjct: 113 APLISKELYEVVMENAEMLDTAVDDKRDFNYDYFGFKTLERSYLLKMDGKITERPGQMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+ + +    K A+E YNL+S  +F  ++PTLFNSGT  PQLSSCFL T+ DD + 
Sbjct: 173 RVSVGIHMND---MKAAIETYNLMSEKYFTHASPTLFNSGTSKPQLSSCFLLTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+++A++++ +GG+G     +R  G+ I GTNG S G++P LKV NDTA  V+QG
Sbjct: 230 GIYDTLKQSALISQSAGGIGLSIHNIRAKGSFIKGTNGTSNGIVPMLKVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ +FL+++KNTG D  R  D+  A WI DLFMKRV  +  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFDFLEMKKNTGKDENRARDLFYALWISDLFMKRVEADGMWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   + + YG EFE  Y  YE      E K  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPHECPGMAETYGAEFEALYTKYE-----SEGKAKKVVRAQDLWFAVLESQIETGSPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDY 618
           + +KD  N +S Q+++G + SSNLCTEI   ++ +E AVCNL SI  N+    A   +D+
Sbjct: 405 MLYKDSINEKSNQKNLGTIKSSNLCTEIMEYTAPDEVAVCNLASIALNMFVDEATKTYDH 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   +  A   L+ +IDIN + + +AK SN  HR IGLG+ G       +   + SPE
Sbjct: 465 KKLYDVVYRATLNLNRIIDINYYPVPEAKNSNMRHRPIGLGVQGLADTFFKMRYDFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A+E+ ++  E I F A+SAS +LA + GAY +++GS   QG F  D  G+    +     
Sbjct: 525 ALELNNQIFETIYFAALSASKDLAMKDGAYETYEGSPMSQGQFQFDMWGVTPSAK----- 579

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W  L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +SG+
Sbjct: 580 ----NWDWSALRKEVAEHGVRNSLLVAPMPTASTSQILGNNECFEPITSNIYVRRVLSGE 635

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN FLVN+L +  LWD+ M +++  ++GSI  IERIP++LK ++ T +EI    +I 
Sbjct: 636 FAVVNKFLVNDLIRAGLWDDKMRNEIIANNGSIQAIERIPEELKGLYKTVWEISQKTVIN 695

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            ++ R  +IDQ QSLN+++ EP+  KL  ++  AW  GLKT  YYLR+R+A +  + T+K
Sbjct: 696 MSAGRAPYIDQGQSLNIHMQEPNFGKLSSMHFYAWKAGLKTGMYYLRARAAVNAVQFTVK 755

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K+N               +  S  +  +C +C
Sbjct: 756 NDTPKVNKEDAQA--------AMVCSIENPDDCVMC 783


>gi|221125333|ref|XP_002156212.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 2 [Hydra magnipapillata]
          Length = 809

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/829 (34%), Positives = 436/829 (52%), Gaps = 39/829 (4%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDG 192
              D  +   + ++   G     +  ++   +++ C GL    +S   +  +  + MY G
Sbjct: 8   QNEDFELDANMFVIKRGGRQEECHFDKITSRIKKLCFGLDMKYISPYAITWKVIRGMYPG 67

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T     + ++  K P+YA + AR  +  L +E                +  LY
Sbjct: 68  ITTVELDTLAAEVAASMTTKHPDYALLAARIAISNLHKETKKKFSDT--------IADLY 119

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                               ++  +   L   +   RDF + Y G + L   Y L ING 
Sbjct: 120 NYISPEINMNCPMVSEEVYQIVQKNKERLDGAIISSRDFEYHYFGFKTLERSYLLKINGK 179

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRV++G+     E    A+E YNL+S   F  ++PTLFNSGT  PQ+SSCF
Sbjct: 180 TAERPQHMLMRVSVGIHG---EDLDAAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCF 236

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L  +  D + GIF  +++ A+++K++GG+G     +R  G++I GTNG S G+IP L+V 
Sbjct: 237 LLAMQSDSIEGIFDTVKQCAIISKWAGGIGLHIHCIRSSGSYIAGTNGHSNGIIPMLRVF 296

Query: 432 NDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+TA  V+QG  KR G++  YLE WH D+ +FLDL+KNTG + +R  D+    W+PDLFM
Sbjct: 297 NNTARYVDQGGNKRPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFGLWVPDLFM 356

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV +   W+L  P E   L D YG+EFE  Y+ YE      E +  ++I A  LW  +L
Sbjct: 357 RRVEEKGMWSLMCPHECPGLADCYGEEFEELYQKYE-----SEGRYRKQIPAQKLWFAIL 411

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607
               ETG P++ +KD CN +S Q+++G +  SNLCTEI   +SS+E AVCNL SI++   
Sbjct: 412 ESQTETGTPYMLYKDSCNRKSNQKNLGTLKCSNLCTEILEYTSSDEIAVCNLASISVNSF 471

Query: 608 --LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
             +       +D+ KL    +   R L+ VID N + + +A+ SN  HR IG+G+ G   
Sbjct: 472 VTVNSETTGVYDFKKLKYVTKVITRNLNKVIDRNFYPVPEARNSNMRHRPIGIGVQGLAD 531

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
           A  L+  P+ S EA  +  +  E I + A+ AS ELA++ G Y S++GS   +G+   D 
Sbjct: 532 AFILMRFPFESDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQGSPISKGILQYDM 591

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             +            T+   W ELK ++   G+RNS  +A  PTA+ A I G ++SI+P 
Sbjct: 592 WNVTP----------TNLWNWAELKAKIALHGVRNSLLVAPMPTASTAQILGNNESIEPY 641

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N+Y +  +SG+F VVN  L+ +L   +LWD+ M + L  H+GS+ NI+ IP D+K ++
Sbjct: 642 TNNIYSRRVLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEIPADIKVLY 701

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904
            TA+EI    LI  A+ R  +IDQ+QS N++L EPS   L  I+   W  GLKT  YYLR
Sbjct: 702 KTAWEIKQKSLINMAADRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGLKTGMYYLR 761

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           ++ A +  + T+     K +       +       +  S  +  +C  C
Sbjct: 762 TKPAANAIQFTVDQNKLKQSNNLKQTDD---DLKSLICSLENKDQCMSC 807


>gi|240280028|gb|EER43532.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H143]
 gi|325088748|gb|EGC42058.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H88]
          Length = 881

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/802 (34%), Positives = 428/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYATLAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVERV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N+ WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNSEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L       +  +D+
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I    ++AS ELA+  G YS+++GS   QG+   D   +          
Sbjct: 525 AKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V   N +    G
Sbjct: 755 QEQLKVADTNVARVNGALKKRG 776


>gi|116283230|gb|AAH03299.1| Rrm1 protein [Mus musculus]
          Length = 762

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/779 (37%), Positives = 444/779 (56%), Gaps = 32/779 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + +D++
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + I +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D             + 
Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL 
Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 753


>gi|324506544|gb|ADY42792.1| Ribonucleoside-diphosphate reductase large subunit [Ascaris suum]
          Length = 790

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/823 (34%), Positives = 429/823 (52%), Gaps = 43/823 (5%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLS 194
                 P   ++  DG     +  ++   +E+ C GL    V    V  +    ++ G+S
Sbjct: 3   QPMKRLPSTYVVKRDGRREGVHFDKIAHRIEKLCYGLNPDYVDYIEVSQKVIAGLFKGVS 62

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+     ++  +  K P+YA + AR  +  L ++         +K        LY  
Sbjct: 63  TVQLDNLAAETAADMTTKHPDYAILAARIAISNLHKQT--------KKMFSEVATVLYNA 114

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +  +              ++  +   L + + ++RDF+F Y G + L   Y L +NG  +
Sbjct: 115 HHPKTGVHTPMISKEVFDIIIANADRLNSAIVHDRDFSFTYFGFKTLERSYLLKMNGEPV 174

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ  FMRVA+G+     E    A+E YNL+S   F  +TPTLFNSGTR PQ+SSCFL 
Sbjct: 175 ERPQHLFMRVAVGIH---KEDIDAAIETYNLMSERWFTHATPTLFNSGTRLPQMSSCFLL 231

Query: 375 TVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
           T+  D + GIF  L++ A+++K +GG+G +   +R  G+ I GT+G S G++P L+V N+
Sbjct: 232 TMQEDSIEGIFDTLKKCALISKSAGGIGLNVHCIRATGSSIAGTSGVSNGLVPMLRVFNN 291

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QG  KR GA   YLE WH D+ E+LDLRKN GD+  R  D+    W+PDLFM+R
Sbjct: 292 TARYVDQGGNKRPGAFAIYLEPWHADIFEYLDLRKNVGDELERCRDLFFGLWVPDLFMQR 351

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+L  P E   L D +G EFE  Y  YE      E +  ++I A  LW  ++T 
Sbjct: 352 VRDNGKWSLMCPAECRGLEDCWGDEFEKLYSKYEA-----EGRYRKQIEARRLWEAIITA 406

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
             ETG P++ +KD CN +S QQ+VG +  SNLCTEI   SS  E AVCNL SI L     
Sbjct: 407 QIETGVPYMVYKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPTEVAVCNLASIALNRFVT 466

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD+ KL    +   R L+ +ID N + + +AK SN  HR IG+G+ G   A  L+ 
Sbjct: 467 TEKTFDFKKLHEVTKVVTRNLNKIIDGNYYPVPEAKVSNMRHRPIGIGVQGLADAFMLMR 526

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            P+ S  A E+     E I   A+ AS ELA++ G Y S++GS   +G+   D  G+   
Sbjct: 527 YPFTSAPARELNKRIFETIYHAALEASCELAKKYGPYESYEGSPISKGILQQDMWGVEP- 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    T +  WD L+  +   G+RNS  +A  PTA+ A I G ++SI+P   N+Y 
Sbjct: 586 ---------TDQCDWDTLRAEIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNVYT 636

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           ++ +SG+F + N  L+ +L    LWD+ M  ++  H GS+  IERIP +++ ++ T +E+
Sbjct: 637 RNVLSGNFQIFNPHLLKDLVDLGLWDDEMKLEIIAHKGSVQAIERIPLEIRNLYKTVWEL 696

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I+ A+ R  +IDQ+QSLN+++ +PS      ++   W  GLKT  YYLR+R A  
Sbjct: 697 SQKDIIDMAADRGAFIDQSQSLNIFIAKPSYANCTSMHFYGWSKGLKTGMYYLRTRPAVD 756

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             + T+     K             ++  +  + +    C +C
Sbjct: 757 AVQFTVDKTRLK-----------EVNAKMLECALSDPEGCVMC 788


>gi|50426387|ref|XP_461790.1| DEHA2G05610p [Debaryomyces hansenii CBS767]
 gi|49657460|emb|CAG90249.1| DEHA2G05610p [Debaryomyces hansenii]
          Length = 867

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/814 (32%), Positives = 430/814 (52%), Gaps = 35/814 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +       +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDTTHVEPVAITQRVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +  ++        LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVSKE--------LYEYVNPKTDLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + ++RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKDTYDIIQANANELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + E+    +E YN++S  +F   +PTLFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAVGIHGNDIERV---IESYNMMSLRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE+     E +    + A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAKGLSDVYGDEFEELYTKYEK-----ENRGRSVVKAQKLWYAILDAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFANNQF 616
           + +KD CN ++ Q+++G++ SSNLC EI   S+ +E AVCNL SI L      +   + +
Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPAFVDKNNTTSWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KL    +   R L+ +ID N + + +A+ SN  +R I LG+ G   A   L +P+ S
Sbjct: 465 DFEKLHEVTKVVTRNLNRIIDRNYYPVPEARNSNMRNRPIALGVQGLADAFMALRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELA+  G Y +++GS   +G+   D            
Sbjct: 525 QEAKELNTQIFETIYHGAVEASIELAEIEGPYQTYEGSPASKGILQFDLWERKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQKLAKHGIRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++ M +++  ++GSI  +  IPD+LK ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGIWNDDMKNNIISNNGSIQTLPNIPDELKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           +        +  +           I  S +S  +
Sbjct: 755 VDQNSVNNASKTIASLEKLNQRKYIAKSVSSTND 788


>gi|255724148|ref|XP_002547003.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240134894|gb|EER34448.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 865

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/794 (34%), Positives = 428/794 (53%), Gaps = 35/794 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKEPVRFDKITARVQRLCYGLDPNHVEPVAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T+    P+YA + AR  +  L ++      K          Q LY     +    
Sbjct: 61  AEIAATMTTVHPDYAVLAARIAVSNLHKQTTKQYSKVS--------QALYEYVNPKTGLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + +   Y L ING   E PQ   M
Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFNYNYFGFKTMERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+  K+  +    +E YNL+S  +F   +P LFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAIGIHGKDIPRV---IETYNLMSQRYFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EFE  Y  YE+     E +  + I A  LW  +L+   ETG P+
Sbjct: 350 LFSPNEAPGLSDVYGDEFEELYTRYEK-----ENRGRQTIKAQKLWYAILSAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN ++ Q+++GV+ SSNLC EI   S+ +E AVCNL SI L        +N  +
Sbjct: 405 MLYKDACNTKTNQKNLGVIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEHDESNTWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   R L+ VID N + + +A++SN  HR I LG+ G   A   L +P+ S
Sbjct: 465 NFEKLHEVTKVVTRNLNRVIDRNYYPVPEAERSNMRHRPIALGVQGLADAFMSLRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ +S+ELA E G Y S+ GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVESSIELAAEEGVYESYPGSPASQGLLQFDLWNRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S++  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLKDLVDLGIWNDAMKSNIISNNGSIQGLPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LKGVDGKLNAVPVT 929
           +  +  +     V 
Sbjct: 755 IDKLVAESAGQTVA 768


>gi|150024560|ref|YP_001295386.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771101|emb|CAL42568.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 806

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/828 (35%), Positives = 457/828 (55%), Gaps = 43/828 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   +++ C GL D V +  V     + +YDG++ S+L+    
Sbjct: 1   MYVIKRDGHKEPVMFDKITERIKKLCYGLNDLVDAVKVAMRVIEGLYDGVATSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YA++ AR  +  L             K+    M  +Y     R  +E 
Sbjct: 61  ETAASMTIAHPDYAQLAARIAISNLHSNT--------NKSFSETMNEMYHYVNPRNGQEA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                   +++  +  +L + + Y RDF ++Y G + L   Y L ING  +E PQ   MR
Sbjct: 113 PLLSEEVHTVIQENAAFLNSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +    K  +E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  + DD + G
Sbjct: 173 VSVGIHLND---LKSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+ETWH D+ EFLDL+KNTG +  R  D+  A W  DLFMKRV +N  WTL
Sbjct: 290 GKRKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGDWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D+YG+EFE  Y NYE+       K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPGLYDVYGEEFEKMYTNYEKA-----GKGRKTIKAHELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL S++L     N  F++D L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSKDEIAVCNLASLSLPMFIENGTFNHDLL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +  +   R L+ VID N + +++ + SN  HR IGLG+ G   A  +L +P+ S +A +
Sbjct: 465 FTVTKRVTRNLNKVIDRNYYPVKEGENSNKRHRPIGLGVQGLADAFIMLRLPFTSDQAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS+E+A E G YS+F GS   QG F  +  GL  E         +
Sbjct: 525 LNQEIFETLYFAAVTASMEMAIEEGPYSTFAGSPISQGEFQYNLWGLKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWANLRKEVMKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+N+L +R LW E +   L   +GS+  +  IP DLK+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLNDLVERGLWTEDLKQQLMRENGSVQKL-NIPQDLKELYKTVWEMSMKDIIDMSR 696

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  ++DQ+QSLNL++ + +  KL  ++  AW  GLKT  YYLR+++A    K TL    
Sbjct: 697 QRGYFVDQSQSLNLFMQDANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNDK 756

Query: 921 G-KLNAVPVTDPNSSTHSLGIPSSCTSD--------------TECEVC 953
             +   + V    + T       + T++               +CE+C
Sbjct: 757 KAEPITIEVKQQTTLTEVEPQTKTMTNEEYSAMIQLAKNATPEDCEMC 804


>gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia]
 gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia]
          Length = 812

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/835 (35%), Positives = 444/835 (53%), Gaps = 42/835 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192
            K+ +    KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G
Sbjct: 2   LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+      +  L    P+YA + AR  +  L +E         +KA     + LY
Sbjct: 62  VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLY 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                   ++       H +++  +   L + + Y+RDF + Y G + L   Y L  NG 
Sbjct: 114 NHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T  PQLSSCF
Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V 
Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+ A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFM
Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  N  W+L  P +   LH+++G EFE  YE YE+     E +  R + A +LW  ++
Sbjct: 351 KRVEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L   
Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMF 465

Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L
Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  PY S EA  +  +  E I + A+ AS ELAQ  GAY +++GS   +G+   D    +
Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGAYETYEGSPVSKGILQYDMWDKV 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+
Sbjct: 586 P----------TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +
Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVW 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A
Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755

Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953
            +  + T+    G +     N      P     +       +  S  +   C  C
Sbjct: 756 ANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810


>gi|15227096|ref|NP_179770.1| RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding /
           ribonucleoside-diphosphate reductase [Arabidopsis
           thaliana]
 gi|56749666|sp|Q9SJ20|RIR1_ARATH RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase R1
           subunit; Short=AtRNR1
 gi|4417273|gb|AAD20398.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|14334814|gb|AAK59585.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|30793895|gb|AAP40400.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|330252128|gb|AEC07222.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis
           thaliana]
          Length = 816

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/840 (35%), Positives = 446/840 (53%), Gaps = 57/840 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +          Y       ++ 
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMF-------YHVNDRSGLKS 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            + A  + E +M  +   L +++ Y+RDF ++Y G + L   Y L + G+ +E PQ   M
Sbjct: 114 PLIADDVFEIIMQ-NAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +     ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV EFL+LRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EFE  Y  YER     E K  + + A  LW ++LT   ETG P+
Sbjct: 350 LFCPNEAPGLADCWGAEFETLYTKYER-----EGKAKKVVQAQQLWYEILTSQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDS 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD++KLA    T    L+ +ID+N + +E AK SN  HR IG+G+
Sbjct: 465 HPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL +P+ SPEA ++  +  E I +HA+ AS ELA   G Y ++ GS   +G+
Sbjct: 525 QGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W  L+  +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVIPSDR----------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI N+  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GLKT 
Sbjct: 695 LKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+     K           V + ++ T    +  S T+  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814


>gi|303316562|ref|XP_003068283.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107964|gb|EER26138.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 877

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/802 (34%), Positives = 430/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYINPKNNRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQKTYEIVMKHSAELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ EK   A+E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGEDIEK---AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL S+ L  +    +  +D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + + +A+KSN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS ++A+  G Y +++GS   QGV   D   +          
Sbjct: 525 ARQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPVSQGVLQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI +I  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQSIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V   +      G
Sbjct: 755 QEQLKVADTNVARSSVVGKKRG 776


>gi|225560468|gb|EEH08749.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus G186AR]
          Length = 881

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/802 (34%), Positives = 428/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYATLAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVERV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV QN+ WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEQNSEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L       +  +D+
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I    ++AS ELA+  G YS+++GS   QG+   D   +          
Sbjct: 525 AKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V   N +    G
Sbjct: 755 QEQLKVADTNVARVNGALKKRG 776


>gi|226293011|gb|EEH48431.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb18]
          Length = 881

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/803 (34%), Positives = 430/803 (53%), Gaps = 33/803 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNGRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAIGIHGDDVERV---IETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L         ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I    ++AS ELA+  G YSS++GS   QG+   D  G+          
Sbjct: 525 AKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGI 940
               K+    V   N +      
Sbjct: 755 QEQLKVADTNVARVNGAMKKRAA 777


>gi|221125331|ref|XP_002156185.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 1 [Hydra magnipapillata]
          Length = 821

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/841 (33%), Positives = 435/841 (51%), Gaps = 51/841 (6%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDG 192
              D  +   + ++   G     +  ++   +++ C GL    +S   +  +  + MY G
Sbjct: 8   QNEDFELDANMFVIKRGGRQEECHFDKITSRIKKLCFGLDMKYISPYAITWKVIRGMYPG 67

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T     + ++  K P+YA + AR  +  L +E                +  LY
Sbjct: 68  ITTVELDTLAAEVAASMTTKHPDYALLAARIAISNLHKETKKKFSDT--------IADLY 119

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                               ++  +   L   +   RDF + Y G + L   Y L ING 
Sbjct: 120 NYISPEINMNCPMVSEEVYQIVQKNKERLDGAIISSRDFEYHYFGFKTLERSYLLKINGK 179

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRV++G+     E    A+E YNL+S   F  ++PTLFNSGT  PQ+SSCF
Sbjct: 180 TAERPQHMLMRVSVGIHG---EDLDAAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCF 236

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L  +  D + GIF  +++ A+++K++GG+G     +R  G++I GTNG S G+IP L+V 
Sbjct: 237 LLAMQSDSIEGIFDTVKQCAIISKWAGGIGLHIHCIRSSGSYIAGTNGHSNGIIPMLRVF 296

Query: 432 NDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+TA  V+QG  KR G++  YLE WH D+ +FLDL+KNTG + +R  D+    W+PDLFM
Sbjct: 297 NNTARYVDQGGNKRPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFGLWVPDLFM 356

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV +   W+L  P E   L D YG+EFE  Y+ YE      E +  ++I A  LW  +L
Sbjct: 357 RRVEEKGMWSLMCPHECPGLADCYGEEFEELYQKYE-----SEGRYRKQIPAQKLWFAIL 411

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL-- 608
               ETG P++ +KD CN +S Q+++G +  SNLCTEI   +SS+E AVCNL SI++   
Sbjct: 412 ESQTETGTPYMLYKDSCNRKSNQKNLGTLKCSNLCTEILEYTSSDEIAVCNLASISVNSF 471

Query: 609 ---------------AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                                 +D+ KL    +   R L+ VID N + + +A+ SN  H
Sbjct: 472 VTVNSETVTLPSGETKLVKTGVYDFKKLKYVTKVITRNLNKVIDRNFYPVPEARNSNMRH 531

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS ELA++ G Y S++G
Sbjct: 532 RPIGIGVQGLADAFILMRFPFESDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQG 591

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S   +G+   D   +            T+   W ELK ++   G+RNS  +A  PTA+ A
Sbjct: 592 SPISKGILQYDMWNVTP----------TNLWNWAELKAKIALHGVRNSLLVAPMPTASTA 641

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G ++SI+P   N+Y +  +SG+F VVN  L+ +L   +LWD+ M + L  H+GS+ N
Sbjct: 642 QILGNNESIEPYTNNIYSRRVLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQN 701

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I+ IP D+K ++ TA+EI    LI  A+ R  +IDQ+QS N++L EPS   L  I+   W
Sbjct: 702 IDEIPADIKVLYKTAWEIKQKSLINMAADRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGW 761

Query: 894 LMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
             GLKT  YYLR++ A +  + T+     K +       +       +  S  +  +C  
Sbjct: 762 KKGLKTGMYYLRTKPAANAIQFTVDQNKLKQSNNLKQTDD---DLKSLICSLENKDQCMS 818

Query: 953 C 953
           C
Sbjct: 819 C 819


>gi|330889422|gb|EGH22083.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 706

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/700 (58%), Positives = 508/700 (72%), Gaps = 6/700 (0%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S             L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         A
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYD
Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN
Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542
           WIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ I A
Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 544

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL
Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GSINL  H  N + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG+MG
Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           FQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA
Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLA 704


>gi|332519181|ref|ZP_08395648.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix
           algicola 5H-3-7-4]
 gi|332045029|gb|EGI81222.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix
           algicola 5H-3-7-4]
          Length = 827

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/804 (34%), Positives = 440/804 (54%), Gaps = 27/804 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V       +YDG++ S+L+    
Sbjct: 1   MFVLKRDGRKEPIMFDKITARVRKLCYGLNELVDPIKVAMRVIDGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             + T+    P+YA++ AR  +  L +    T            M  LY     R  ++ 
Sbjct: 61  EQAATMTTAHPDYARLAARISVSNLHKNTKKTFSDV--------MTDLYQYVNPRTGKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                   +++  +   L + + Y RDF ++Y G + L   Y L ING   E PQ   MR
Sbjct: 113 PLLSDEVYNVIMENKEKLDSAIIYNRDFGYDYFGFKTLERSYLLKINGEIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ + +      A+E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSIGIHIND---LDAALETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLKVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+  FLDL+KN G +  R  D+  A W+PDLFMKRV ++A WTL
Sbjct: 290 GKRKGSFAMYIEPWHADIFNFLDLKKNHGAEELRARDLFYAMWMPDLFMKRVQEDAQWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L D++ +EFE  Y  YE      E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPNECPGLCDVHSEEFEALYTKYEA-----EGKGRKSIKARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N +FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSEDEVAVCNLASIALPMFVKNGEFDHKEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   + L+ VID N + +++A+ SN  HR +GLG+ G   A   L +P+ S  A +
Sbjct: 465 FRITKRVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGVQGLADAFIKLRMPFTSDAAKQ 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E + + A++AS+E AQ  G Y +++GS   +G F  +   +  +         +
Sbjct: 525 LNQDIFETLYYAAVTASMEEAQVDGPYQTYEGSPMSKGEFQHNLWNIQEDTL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W++L+K+V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWEKLRKQVAKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LW+E + +++   +GSI ++E IP D+K ++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVDLGLWNEDLKNEIMRANGSIQHVENIPQDIKDLYKTVWELSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA   +K T+    
Sbjct: 698 QRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAKKVTISRAT 757

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSC 944
                      ++   +    ++ 
Sbjct: 758 KAAPVTKEVAVDNDGVAQKQQTAA 781


>gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba]
 gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba]
          Length = 812

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/835 (35%), Positives = 440/835 (52%), Gaps = 42/835 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192
            K+ +    KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G
Sbjct: 2   LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+      +  L    P+YA + AR  +  L +E         +K      + LY
Sbjct: 62  VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKVFSDVFEDLY 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                   ++       H +++  +   L + + Y+RDF + Y G + L   Y L  NG 
Sbjct: 114 EHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T  PQLSSCF
Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V 
Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+ A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFM
Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  N  W+L  P +   L D++G EFE  YE YE+     E +  R + A +LW  ++
Sbjct: 351 KRVEANGDWSLMCPHKCPGLQDVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L   
Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMF 465

Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ KL    +   + L+ +IDIN + + +AKKSN  HR +G+G+ GF  AL L
Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPVGIGVQGFADALIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  PY S EA  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +
Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQAEGPYETYEGSPVSKGILQYDMWDKV 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+
Sbjct: 586 P----------TNLWDWQKLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +
Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVW 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A
Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755

Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDPNSSTHS-----LGIPSSCTSDTECEVC 953
            +  + T+    G +     N      P             +  S  +   C  C
Sbjct: 756 ANAIQFTVNKKQGAVSINGQNGASEGSPQKFEEDRERKMADMVCSLENKDACMSC 810


>gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate reductase large subunit [Arabidopsis
           thaliana]
          Length = 816

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/840 (35%), Positives = 447/840 (53%), Gaps = 57/840 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPILVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +          Y       ++ 
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMF-------YHVNDRSGLKS 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            + A  + E +M  +   L +++ Y+RDF ++Y G + L   Y L + G+ +E PQ   M
Sbjct: 114 PLIADDVFEIIMQ-NAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +     ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+G L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYGTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV EFL+LRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EFE  Y  YER     E K  + + A  LW ++LT   ETG P+
Sbjct: 350 LFCPNEAPGLADCWGAEFETLYTKYER-----EGKAKKVVQAQQLWYEILTSQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDS 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD++KLA    T    L+ +ID+N + +E AK SN  HR IG+G+
Sbjct: 465 HPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL +P+ SPEA ++  +  E I +HA+ AS ELA   G Y ++ GS   +G+
Sbjct: 525 QGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W  L+  +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVIPSDR----------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI N+  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GLKT 
Sbjct: 695 LKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+     K           V + ++ T    +  S T+  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814


>gi|195403619|ref|XP_002060363.1| GJ14594 [Drosophila virilis]
 gi|194140867|gb|EDW57333.1| GJ14594 [Drosophila virilis]
          Length = 818

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/833 (35%), Positives = 435/833 (52%), Gaps = 48/833 (5%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200
            KL ++  DG     +  ++   V++ C  L    V    +  +    +Y G++  +L+ 
Sbjct: 10  EKLYVIKRDGRKEEIHFDKITSRVQKLCYNLNMDFVDPVSITLKVINGLYCGVTTQELDN 69

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
                + +L     +YA + AR  +  L +E         +K      + LY        
Sbjct: 70  LAAEIAASLTTHHADYALLAARIAVSNLHKET--------RKVFSDVFEDLYKHVNRETN 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E        H +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ  
Sbjct: 122 ETSPMVSEYHYNIVANNSDRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGKIAERPQHM 181

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRVA+G+   +      A+E YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D 
Sbjct: 182 LMRVAIGIHGDD---IDSAIETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMASDS 238

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF  +++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+
Sbjct: 239 IEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSISGTNGTSNGLVPMLRVFNNVARYVD 298

Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D+  A WIPDLFMKRV  N  
Sbjct: 299 QGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEANED 358

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D++G+EFE  Y  YE+     E +  R + A +LW  ++    ETG 
Sbjct: 359 WSLMCPHKCPGLQDVWGEEFEKLYVKYEK-----EGRQNRIVKAQSLWFAIIESQVETGT 413

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFD 617
           P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L         +D
Sbjct: 414 PYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTAEKSYD 473

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   + L+ +IDIN + + +AKKSN  HR IG+G+ GF  AL L+  PY S 
Sbjct: 474 FKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGFADALILMRFPYESE 533

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA  +  +  E I + A+ AS EL+++ G Y ++ GS   +GV   D             
Sbjct: 534 EASLLNQQIFETIYYGALEASCELSKKDGPYETYIGSPVSKGVLQYDMWNRSP------- 586

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    WD LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 587 ---TDLWDWDHLKRSIKQHGVRNSLLIAPMPTASTAQIMGNNESFEPYTSNIYTRRVLSG 643

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L + DLWD+ M + +    GSI NIE IP++++ ++ T +EI     I
Sbjct: 644 EFQVVNPHLLRDLTELDLWDDEMKNQIIASRGSIQNIESIPEEIRDLYKTVWEISVKSTI 703

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+
Sbjct: 704 KMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTV 763

Query: 917 KGV----------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                ++     +D         +  S  +   C  C
Sbjct: 764 DKNVSVVEINAQNFVDQHASMEMGDTNESDIERERRMAQMICSLENKDACLSC 816


>gi|187608195|ref|NP_001120566.1| ribonucleotide reductase M1 [Xenopus (Silurana) tropicalis]
 gi|171847253|gb|AAI61529.1| LOC100145720 protein [Xenopus (Silurana) tropicalis]
          Length = 797

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/821 (34%), Positives = 443/821 (53%), Gaps = 38/821 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL  + V    +  +  + +Y+G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYNGVTTIELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKIFSDVMEDLYNYVNPLNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ + G + L   Y L I+G   E PQ   M
Sbjct: 113 SPMVSKETLDLVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKIDGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+          A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KTDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHYDVFEFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L +++G +F         +    E +  + + A  LW  ++    ETG P+
Sbjct: 350 LMCPHECPGLEEVWGDKF-----EELYERYEREGRARKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + FD+ 
Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDDEVAVCNLASLALNMYVTPERSFDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLADVTKVIVRNLNKIIEINFYPVPEAEYSNKRHRPIGIGVQGLADAFILMRYPFESEEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ +S ELA+E G Y +++GS   +G+   D   +           
Sbjct: 525 QLLNKQIFETIYYAALESSCELAKELGPYDTYEGSPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TGLWDWAALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +  ++GSI N+  IP DLK+++ T +EI    +I  
Sbjct: 635 QIVNPHLMKDLTERGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL  
Sbjct: 695 AADRGAFIDQSQSLNIHVAEPNYGKLTSMHFFGWKQGLKTGMYYLRTRPAANPIQFTLNK 754

Query: 919 VDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K         +         +   +  S  +  EC +C
Sbjct: 755 EKLKEKELISKETMEKDKEEKEKNKAAMVCSLENRDECLMC 795


>gi|261197195|ref|XP_002625000.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239595630|gb|EEQ78211.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239606620|gb|EEQ83607.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis ER-3]
          Length = 886

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/802 (34%), Positives = 429/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQGTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + EK    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVEKV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EF+  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGEEFDALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L       +  +D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   +++AS ELA+  G YS+++GS   QG+   D   +          
Sbjct: 525 AKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V   N +    G
Sbjct: 755 QEQLKVADTNVARVNGAMKKRG 776


>gi|325953831|ref|YP_004237491.1| ribonucleoside-diphosphate reductase, subunit alpha [Weeksella
           virosa DSM 16922]
 gi|323436449|gb|ADX66913.1| ribonucleoside-diphosphate reductase, alpha subunit [Weeksella
           virosa DSM 16922]
          Length = 779

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/814 (35%), Positives = 448/814 (55%), Gaps = 42/814 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   + +  ++   + +   GL   +     +  +  + +YD ++ ++L+   
Sbjct: 1   MYVIKRNGKQEAVHFDKITARIHKLVYGLSVDEKDVIEIAKKVIQGIYDNVTTTELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T     P++A + AR  +  L +  L +  K  +         LY          
Sbjct: 61  AETAATYTTVHPDFAVLAARISVSNLHKNTLKSFSKTAKL--------LYDYIDPVTNTR 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   + + + Y+RD+ F+Y G + L   Y +  NG   E PQ  FM
Sbjct: 113 APLLSEETYDIIRNNADEIDSSIIYDRDYNFDYFGFKTLERSYLIRTNGKVTERPQHLFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     +  K A+E YNL+S   F+ +TPTLFNSGT  PQ+SSCFL ++  D + 
Sbjct: 173 RVALGIH---KQDIKAAIETYNLMSEKWFIHATPTLFNSGTPKPQMSSCFLLSMTEDSIV 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+  A++++ +GG+G     VR  G++I GT G S G+IP L+V NDTA  V+QG
Sbjct: 230 GIFDTLKRCALISQSAGGIGLSIHNVRATGSYIKGTGGISNGIIPMLRVYNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA+  YLE WH D+ +FL+LRKN G +  R  D+  A WIPDLFM+RV +NA W+
Sbjct: 290 GGKRKGAIAVYLEPWHADIFDFLNLRKNHGKEEMRARDLFPALWIPDLFMQRVEENADWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L+D+YG  FE  Y++YE      +    +K+ A  LW  +L    ETG P+
Sbjct: 350 LFDPNEAPGLYDVYGSSFEELYQHYEN-----DGIFRKKVKARELWNAILEAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S Q+++GV+ SSNLCTEI   +S++E AVCNL S+ L  + + N FD+ K
Sbjct: 405 MCYKDAANEKSNQKNIGVIRSSNLCTEIMEYTSADEVAVCNLASLALPRYVSENGFDFQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ VID N + + + + SN  HR IGLG+ G      LL +P+ S +A 
Sbjct: 465 LYEVTKIVTRNLNKVIDGNYYPVPETENSNFKHRPIGLGVQGLADVFLLLRMPFESEKAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ +S+ELA+E GAY SFKGS   +G F  D             +  
Sbjct: 525 QLNKDIFETIYYAAMESSMELAKEEGAYESFKGSPLSEGKFQFDLWN----------VQP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W  L+K V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 SDRWDWKGLRKNVMEFGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFV 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L + +LWD  M + L   +GS+ NIE IP +LK+++ T +EI    +I+ A
Sbjct: 635 VVNKHLIKDLIELNLWDARMKNKLIAENGSVQNIEEIPANLKELYKTVWEIKQKTIIDMA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL++ EP+  KL  ++  AW  GLKT  YYLR+++A    K T++ V
Sbjct: 695 ADRGAFICQSQSLNLFMAEPNMAKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVEKV 754

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               +             + I  S  +  EC VC
Sbjct: 755 QSSED-----------KQVDISCSLDNPDECIVC 777


>gi|242765906|ref|XP_002341068.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724264|gb|EED23681.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 873

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/809 (34%), Positives = 434/809 (53%), Gaps = 33/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                ++ LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAVLAARIAVSNLHKQTKKQFSAV--------IEDLYHYVNPKNNKA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISPEMYETVMKHADELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  ++A+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVAVGIHG---ENIEKAIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKSAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFM+RV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EF+  YE YE+     E +  R + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGEEFDALYEKYEK-----EGRGRRTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL S+ L       +  +D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +IDIN + + +AKKSN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS+ELA+E G Y +++GS   QG+   D              
Sbjct: 525 AKQLNIQIFETIYHGALTASIELAKEYGTYETYEGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK +++  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDALKAQIREHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
               K+    V   N  +       +  +
Sbjct: 755 QEQLKVQDTNVARANGISKKRSPAPAAFN 783


>gi|332876815|ref|ZP_08444572.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685241|gb|EGJ58081.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 777

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/814 (34%), Positives = 443/814 (54%), Gaps = 44/814 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   + +  ++   + +   GL   +     +  +  + +YD ++ ++L+   
Sbjct: 1   MFVIKRNGKKEAVHFDKITARIHKLIYGLSISEKDVIEIAKKVIQGIYDNITTTELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++       P+++ + AR  +  L +  L +  K  Q         LY          
Sbjct: 61  AETAAAQTTIHPDFSVLAARIAVSNLHKNTLKSFSKTAQL--------LYEYTDPITQTH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RD+ F+Y G + L   Y +  NG   E PQ  FM
Sbjct: 113 APLISEEIYKIIRKNADELDSSVIYDRDYNFDYFGFKTLERSYLIRTNGKVTERPQHLFM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  + A+E YNL+S   F+ +TPTLFN+GT  PQ+SSCFL ++  D + 
Sbjct: 173 RVALGIY---KEDIQAAIETYNLMSEKWFIHATPTLFNAGTPKPQMSSCFLLSMTEDSIA 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+  A++++ +GG+G     +R  G++I GT G S G+IP L+V NDTA  V+QG
Sbjct: 230 GIFDTLKRCALISQSAGGIGVSIHNIRSTGSYIKGTGGISNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA+  Y+E WH+D+ +F+D+RKN G +  R  D+  A WIPDLFM+RV  +  W+
Sbjct: 290 GGKRKGAIAVYIEPWHLDIFDFIDIRKNHGKEEMRARDLFPALWIPDLFMQRVEADQMWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L+++YG++F   Y  YE      E K  ++I A  LW  +L    ETG P+
Sbjct: 350 LFDPNEAQGLYEVYGEKFNELYTTYEN-----EGKFRKQIKARELWTAILEAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD  N +S Q+++G + SSNLCTEI   ++++E AVCNL S+ L  + ++  FD+ K
Sbjct: 405 MCYKDAVNEKSNQKNIGTIRSSNLCTEIMEYTNADEVAVCNLASLALPRYVSSGGFDFQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ +ID N + I + K SN  HR IGLG+ G      LL +P+ SPEA 
Sbjct: 465 LYEVTKIVTRNLNKIIDGNYYPIPETKTSNDRHRPIGLGVQGLADVFLLLRLPFESPEAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E I F ++ AS++LA+E+GAYSSF GS   +G F  D   ++   R       
Sbjct: 525 RLNKDIFETIYFASMEASMDLAKEQGAYSSFAGSPLSEGKFQFDLWQVVPSDR------- 577

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                W++L++ V T G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 578 ---WDWEKLRQEVMTHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFV 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN FL+ +L +  LW+  M + L   +GS+ NI  IP +LK+++ T +EI    +I+ A
Sbjct: 635 VVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIPTELKELYKTVWEIKQKTIIDMA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLNL++ EP+  KL  ++  AW  GLKT  YYLR+++A    K T+   
Sbjct: 695 AERGAFICQSQSLNLFMAEPNLAKLTSMHFHAWKSGLKTGMYYLRTKAAVDAIKFTVD-- 752

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                               +  S  +  EC  C
Sbjct: 753 -----------TQLLLGQSQVACSLDNPEECLAC 775


>gi|327351615|gb|EGE80472.1| ribonucleoside-diphosphate reductase [Ajellomyces dermatitidis ATCC
           18188]
          Length = 886

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/802 (34%), Positives = 429/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQGTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + EK    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVEKV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EF+  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGEEFDALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L       +  +D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   +++AS ELA+  G YS+++GS   QG+   D   +          
Sbjct: 525 AKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V   N +    G
Sbjct: 755 QEQLKVADTNVARVNGAMKKRG 776


>gi|255070623|ref|XP_002507393.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
 gi|226522668|gb|ACO68651.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
          Length = 841

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/863 (34%), Positives = 450/863 (52%), Gaps = 78/863 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG     +  ++   + +   GL  +     +V  +    +Y G++ S+L+  
Sbjct: 2   AMYVVKRDGRQEPVHFDKITARINKLAYGLNQEFCDPVLVAQKVAVGVYKGVTTSELDEL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ ++  K P+YA++ AR  +  L +  L +  +         M+ +Y     R  +
Sbjct: 62  AAETAASMTSKHPDYAQLAARIAVSNLHKNTLKSFSET--------MKVMYEHVNKRNGK 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                      ++  +     +++ Y+RDF ++Y G + L   Y L ++G  +E PQ   
Sbjct: 114 WSPLLADDVYEIIKENADRFDSEIVYDRDFDYDYFGYKTLERSYLLRVDGKIVERPQHLL 173

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRVA+G+        ++A++ Y++LS      ++PTLFNSGT  PQLSSCFL  +  D +
Sbjct: 174 MRVAIGIHK----DVEKAIDTYHMLSERWMTHASPTLFNSGTPRPQLSSCFLIAMKEDSI 229

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E A ++K +GG+G     +R   ++I GTNG S G+IP L+V NDTA  V+Q
Sbjct: 230 EGIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARYVDQ 289

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKGA   YLE WH D+ ++LDLRKN G +  R  D+    W  DLFMKRV  N  W
Sbjct: 290 GGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGEW 349

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLF P+E   L D +G+EFE  YE YE      E K  + + A  LW  +L    ETG+P
Sbjct: 350 TLFCPNEAPGLADCWGEEFEALYEKYEA-----EGKGKKTVKAQQLWFAILESQVETGNP 404

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-------- 611
           ++ FKD CN +S QQ++G + SSNLCTEI   +S EETAVCNL SI L            
Sbjct: 405 YMLFKDACNRKSNQQNLGTIRSSNLCTEIVEYTSPEETAVCNLASIALPRFVIENNPQSP 464

Query: 612 ---------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
                          AN  FD+DKLA   R   R L+ +ID+N + +E A++SN  HR I
Sbjct: 465 TGRTEAKKLRGSIGAANRYFDHDKLAEITRKVTRNLNRIIDVNYYPVETARRSNMKHRPI 524

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G      LL +P+ SPEA ++  E  E I F A++ S ++A+  G Y S+ GS  
Sbjct: 525 GLGVQGLADVFILLGMPFDSPEAKKLNAEIFETIYFAALTESNDIAKRDGTYESYPGSPV 584

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             GV   D  GL         M    R  W  L+ ++   G+RNS  +A  PTA+ + I 
Sbjct: 585 SNGVLQPDMWGLT-------EMPGGDRHDWTGLRTKISEHGVRNSLLVAPMPTASTSQIL 637

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G ++  +P   N+Y +  +SG+FTVVN  L+++L +  LWD ++ ++L  ++GS+ +++ 
Sbjct: 638 GNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTEMGLWDPSLKNELIANNGSVQSLD- 696

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IPD+LK+I+ T +EI    L++ A+ R  +IDQ+QS N+++ + +  KL  ++  AW  G
Sbjct: 697 IPDNLKEIYKTVWEIKQRILVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKG 756

Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDGKLN-------------------------AVPVTD 930
           LKT  YYLRSR+A    K T+     K                            V    
Sbjct: 757 LKTGMYYLRSRAAADAVKFTVDPNSVKAKNASSKKEVVGDKENQPANGEGAKKGPVDPDM 816

Query: 931 PNSSTHSLGIPSSCTSDTECEVC 953
              +  +  I  S  +  EC +C
Sbjct: 817 EEEALMAAKIACSLANKDECVMC 839


>gi|18859325|ref|NP_571530.1| ribonucleoside-diphosphate reductase large subunit [Danio rerio]
 gi|3914656|sp|P79732|RIR1_DANRE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit; AltName: Full=Ribonucleotide reductase protein
           R1 class I
 gi|1695829|gb|AAB37102.1| ribonucleotide reductase protein R1 class I [Danio rerio]
          Length = 794

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/818 (34%), Positives = 443/818 (54%), Gaps = 35/818 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T   K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATSTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNSRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ + G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G +I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P++   L + +G+EFE  Y  YE+     E +  R + A  LW  ++    ETG P+
Sbjct: 350 LMCPNDCPGLDECWGEEFEKLYAKYEQ-----EGRAKRVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S +Q++G +  SNLCTEI   +S++E AVCNL SI L  +  +   FD+ 
Sbjct: 405 MLYKDACNRKSNRQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLAS  +  V+ L+ +IDIN + +++A+ SN  HR IG+G+ G   A  L+  P+ S EA
Sbjct: 465 KLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ +S ELA E G Y ++ G    +G+   D               
Sbjct: 525 QLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + +   +GSI  I  IPDDLK+++ T +EI    +++ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++   +  + TL  
Sbjct: 695 AADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNK 754

Query: 919 VDGKLNAVPVTDPNSSTHS---LGIPSSCTSDTECEVC 953
              K      +  +  T       +  S  +  EC +C
Sbjct: 755 EKLKETQKTTSSEDEETKERNKAAMVCSLENRHECLMC 792


>gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|12644286|sp|P48591|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster]
 gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster]
 gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct]
          Length = 812

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/835 (35%), Positives = 443/835 (53%), Gaps = 42/835 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192
            K+ +    KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G
Sbjct: 2   LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+      +  L    P+YA + AR  +  L +E         +KA     + LY
Sbjct: 62  VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLY 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                   ++       H +++  +   L + + Y+RDF + Y G + L   Y L  NG 
Sbjct: 114 NHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T  PQLSSCF
Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V 
Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+ A  V+QGG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFM
Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  N  W+L  P +   LHD++G EFE  YE YE+     E +  R + A +LW  ++
Sbjct: 351 KRVEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L   
Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMF 465

Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ KL    +   + L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L
Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  PY S EA  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +
Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKV 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T+   W +LK+ ++  G+RNS  +A  PTA+ A I G ++S +P   N+
Sbjct: 586 P----------TNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +
Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVW 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A
Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755

Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953
            +  + T+    G +     N      P     +       +  S  +   C  C
Sbjct: 756 ANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810


>gi|145256649|ref|XP_001401473.1| ribonucleoside-diphosphate reductase large chain [Aspergillus niger
           CBS 513.88]
 gi|134058380|emb|CAK38565.1| unnamed protein product [Aspergillus niger]
          Length = 865

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/808 (34%), Positives = 432/808 (53%), Gaps = 33/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNNQP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L ING   E PQ   M
Sbjct: 113 APMISKETYEIIMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVAVGIHGSDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EF+  YE YE+     E +  R I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFDALYEKYEK-----EGRGRRTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ S E
Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I    ++AS +LA+E G Y +++GS   QG+   D              
Sbjct: 525 ARQLNIQIFETIYHAGLTASSDLAKEFGTYETYEGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWAALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWEISQRTILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
               K+    V   N++     + ++ +
Sbjct: 755 QEQLKVEDTNVARTNAAYKKRAVGAASS 782


>gi|189196218|ref|XP_001934447.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187980326|gb|EDU46952.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 795

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/819 (33%), Positives = 431/819 (52%), Gaps = 36/819 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +         LY     +  + 
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVVE--------DLYSYVNPKNGKS 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF +++ G + L   Y L ING   E PQ   M
Sbjct: 113 QPMISDHVYKVIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++  K   A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGEDIPK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D+YG EFE  YE+YE+Q      K    + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEKQN-----KGRETVRAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ S E
Sbjct: 465 QKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A+++S E+A+E G Y +++GS   QG+   D   +          
Sbjct: 525 AKKLNIQIFETIYHAALTSSCEIAKELGPYQTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    +I+
Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKL---NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K+   N               +  S  +   C +C
Sbjct: 755 QEQLKVADTNIANEARDGDIYADAVLACSIENPESCVMC 793


>gi|171690020|ref|XP_001909942.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944965|emb|CAP71076.1| unnamed protein product [Podospora anserina S mat+]
          Length = 901

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/805 (35%), Positives = 431/805 (53%), Gaps = 33/805 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V    +  +    +Y G++ + L+     ++  
Sbjct: 1   DGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAY 60

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++         +K     +  LY     +          
Sbjct: 61  MTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNGRPSPMIAK 112

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
                +      L + + Y+RDF ++Y G + L   Y L +NG  +E PQ   MRVA+G+
Sbjct: 113 ETYECVMRHKDDLDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGI 172

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGAL 387
              + E+    +E Y  +SS  F  ++PTLFN+GT   QLSSCFL  + DD + GI+  L
Sbjct: 173 WGDDIERV---IETYTYMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIDGIYDTL 229

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 230 KTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPG 289

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WTL  P+E
Sbjct: 290 AFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMCPNE 349

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+EFE  YE YE+     E +  + I A  LW  +L    ETG+P++ +KD 
Sbjct: 350 CPGLADCYGEEFEALYEKYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDA 404

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLAST 624
           CN +S QQ++GV+ SSNLCTEI   S+ +E AVCNL S+ L      N  +FD+ KL   
Sbjct: 405 CNRKSNQQNLGVIRSSNLCTEIVEYSAPDEVAVCNLASLALPQFVDYNEAKFDFKKLHEV 464

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +  VR L+ +ID+N + +++A  SN  HR IGLG+ G   A   L +P+ S EA E+  
Sbjct: 465 TQIVVRNLNKIIDVNHYPVKEAYNSNMRHRPIGLGVQGLADAFLALRMPFESAEARELNK 524

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E I   A++ S +LA+E+G YS+++GS   +G+   D             +  +   
Sbjct: 525 QIFETIYHAALTMSCQLAKEQGTYSTYEGSPVSKGILQYDMWN----------VKPSDLW 574

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WDELK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 575 DWDELKAEIKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNP 634

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R 
Sbjct: 635 WLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 694

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A    + T+      +
Sbjct: 695 AFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEALLV 754

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDT 948
               V   +S       P S  S  
Sbjct: 755 QDSAVAKTSSGLKKRAPPGSYMSSP 779


>gi|302915563|ref|XP_003051592.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732531|gb|EEU45879.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 893

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/809 (34%), Positives = 430/809 (53%), Gaps = 38/809 (4%)

Query: 145 LKIMMD-----DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESD 197
           + +        DG        ++   V   C GL    V    +  +    +Y G++   
Sbjct: 1   MFVRKRADNLSDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQ 60

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+     ++  +    P+YA + AR  +  L ++         +K     +  LY     
Sbjct: 61  LDDLAAETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSAVVSDLYHYVNP 112

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           +               +      L + + Y+RDF ++Y G + L   Y L I+G  +E P
Sbjct: 113 KNDRASPMISQETYECVMRHKEELDSAIVYDRDFQYQYFGFKTLERSYLLKIDGKIVERP 172

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+     E+    +E YNL+SS  F  ++PTLFN+GT  PQLSSCFL  + 
Sbjct: 173 QHMIMRVAVGIWGDNIERV---LETYNLMSSKFFTHASPTLFNAGTPQPQLSSCFLVDMK 229

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S GV P L+V N+TA 
Sbjct: 230 EDSIEGIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVTPMLRVFNNTAR 289

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +
Sbjct: 290 YVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEK 349

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTL  P+E   L D YG+EFE  YE YE+       K  + + A  LW  +L    E
Sbjct: 350 NGDWTLMCPNECPGLADCYGEEFEALYEKYEKA-----GKGRKTMKAQKLWYAILEAQTE 404

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FAN 613
           TG+P++ +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL S+ L +   +  
Sbjct: 405 TGNPFMLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPSFINYDE 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +D+ KL    +T VR L+ +ID+N + + +A+ SN  HR IG+G+ G   A   L +P
Sbjct: 465 ACYDFQKLHEVTQTVVRNLNRIIDVNHYPVPEARNSNMRHRPIGVGVQGLADAFLALRMP 524

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA E+  +  E I   A++ASV+LA+E G YS+FKGS   +G+   D         
Sbjct: 525 FESPEARELNKQIFETIYHAALTASVQLAKEEGPYSTFKGSPASEGILQFDMWN------ 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +  +    W+ L+++VK  G RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 579 ----VKPSDLWDWESLREQVKEHGTRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRR 634

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN +L+ +L    LW ++M + +   +GSI NI  IP ++K ++ T +EI  
Sbjct: 635 VLAGEFQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPAEVKALYKTVWEISQ 694

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A +  
Sbjct: 695 RQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPI 754

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           + T+     K+                  
Sbjct: 755 QFTVDQQALKVADANSAQIRPLKKRAPPA 783


>gi|310798516|gb|EFQ33409.1| ribonucleotide reductase [Glomerella graminicola M1.001]
          Length = 894

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/802 (34%), Positives = 430/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNNKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMIAKDTYDAVMRHKEELDSAIVYDRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S GV+P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG+EFE  YE YE+       K  + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEQM-----GKGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD  N +S Q+++G + SSNLCTEI    + +E AVCNL S+ L      N+  +D+
Sbjct: 405 MLYKDAANRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDYNEGVYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + +++A+ SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 QKLHEVTQVVVRNLNRIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++ SV+LA+E G Y +++GS   QG+   D             +
Sbjct: 525 ARDLNKKIFETIYHAALTMSVQLAREEGPYETYEGSPVSQGILQYDMWN----------V 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 575 KPSDLWDWDALKEQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW +AM + +   +GSI NI  IP ++K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWEISQRTVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               K+    V           
Sbjct: 755 QEALKVADSAVGKVLKKRAPPP 776


>gi|258566183|ref|XP_002583836.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
 gi|237907537|gb|EEP81938.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
          Length = 884

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/800 (34%), Positives = 429/800 (53%), Gaps = 33/800 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNNRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQKTYEIVMKHSEELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + EK   A+E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDIEK---AIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   Y+E WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L  +    +  +D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDPVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  +R L+ +ID N + + +A+KSN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVLIRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   +++AS +LA+  G Y +++GS   QG+   D   +          
Sbjct: 525 ARQLNTQIFETIYHASLTASCDLAKIDGPYETYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LKK +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWDWDSLKKEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHS 937
               K+    V   N     
Sbjct: 755 QEQLKVADTNVARTNGIAKK 774


>gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta]
 gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta]
          Length = 812

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/826 (35%), Positives = 438/826 (53%), Gaps = 42/826 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               +  L    P+YA + AR  +  L +E         +KA     + LY        +
Sbjct: 71  AAEIAAGLTCYHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLYNHVNKETNQ 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +       H +++  +   L + + Y+RDF + Y G + L   Y L  NG   E PQ   
Sbjct: 123 KVSLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKTNGKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D +
Sbjct: 183 MRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFL+L+KNTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D++G EFE  YE YE+     E +  R + A +LW  ++    ETG+P
Sbjct: 360 SLMCPHKCPGLQDVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWYAIIEAQVETGNP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L         +D+
Sbjct: 415 YMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R L+ +IDIN + + +A+KSN  HR +G+G+ GF  AL L+  PY S E
Sbjct: 475 KKLKEVTKIVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  G Y +++GS   +G+   D    +         
Sbjct: 535 AGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W +LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEISVKSTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVN 764

Query: 918 GVDG----------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              G             +    + +       +  S  +   C  C
Sbjct: 765 KKKGAEGINGQNGTSDESSKQFEEDRERKMADMVCSLENKDACMSC 810


>gi|238491914|ref|XP_002377194.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
 gi|317146285|ref|XP_001821413.2| ribonucleoside-diphosphate reductase large chain [Aspergillus
           oryzae RIB40]
 gi|220697607|gb|EED53948.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
          Length = 854

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/808 (34%), Positives = 433/808 (53%), Gaps = 33/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +  + 
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYINPKNKKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L I+G   E PQ   M
Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVSVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYERYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +IDIN + + +AK SN  HR I LG+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA++ G Y S++GS   QG+   D              
Sbjct: 525 AKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
               K+    V   N+S     + ++  
Sbjct: 755 QEALKVADTNVARANASFRKRAVGAASN 782


>gi|72084113|ref|XP_780425.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           isoform 1 [Strongylocentrotus purpuratus]
 gi|115956273|ref|XP_001177269.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain
           [Strongylocentrotus purpuratus]
          Length = 797

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/817 (35%), Positives = 438/817 (53%), Gaps = 35/817 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +   DG        ++   ++  C  L    +   ++  +    +Y G++  +L+T   
Sbjct: 5   YVQKRDGRKEIVMFDKITSRIQRLCYNLNSDFIDPAVITMKVISGVYPGVTTVELDTLAA 64

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ T+  K P+YA + AR  +  L +E         +K     M+ L+     R     
Sbjct: 65  ETAATMTTKHPDYAVLAARIAVSNLHKET--------KKLFSAVMKDLFEYTNPRNGLHS 116

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    +++ +   L + + Y+RDF + Y G + L   Y L ING   E PQ   MR
Sbjct: 117 PLISEETMMIINDNADRLNSAVLYDRDFEYNYFGFKTLERSYLLKINGKVAERPQHMLMR 176

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+  K+      A++ YNLLS   F  ++PTLFN+GT  PQLSSCFL T+ DD + G
Sbjct: 177 VSVGIHGKD---IDAAIQTYNLLSDRWFTHASPTLFNAGTNRPQLSSCFLLTMKDDSIDG 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG 
Sbjct: 234 IYETLKNCALISKTAGGIGLNIHNIRASGSYIAGTNGNSNGLLPMLRVYNNTARYVDQGG 293

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH D+ +FLD +KN G + +R  D+    WIPDLFMKRV  +  WTL
Sbjct: 294 NKRPGAFAIYLEPWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDWTL 353

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   LH+++G+EFE  YE YE+       +  + I A ALW  ++    ETG P++
Sbjct: 354 MCPHESPGLHEVWGEEFETLYEGYEKA-----GRGRKTIKAQALWYAIIESQTETGTPYM 408

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S QQ++G +  SNLCTEI   SS++E AVCNL SI L     +  FD+ KL
Sbjct: 409 VYKDHCNKKSNQQNLGTIKCSNLCTEIVEYSSADEVAVCNLASIALPRFVQDRTFDFKKL 468

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
                     L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  P+ S EA +
Sbjct: 469 EEVTMVITENLNKIIDINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRFPFESVEAKK 528

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E I + A+ AS ++A + G Y ++KGS   +G+   D  G+            T
Sbjct: 529 LNIQIFETIYYAALKASCKIAAKLGPYETYKGSPVSKGILQQDMWGVTP----------T 578

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               W  LK  +   G+RNS  +A  PTA+ A I G +++I+P   N+Y +  +SG+F V
Sbjct: 579 DLHDWASLKADIAKHGVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRRVLSGEFQV 638

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LW + M ++L  ++GSI NI  IPDD+K ++ T +EI    +I+ A 
Sbjct: 639 VNHHLLRDLTDMGLWSDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQKTIIQMAV 698

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLN+++ EP+  KL  ++  AW  GLKT  YYLR+R A    K TL  + 
Sbjct: 699 DRGAYIDQSQSLNIHIAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPAADPIKFTLDKLS 758

Query: 921 GKLNA----VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            K  +        +   + +   +  S  +   C  C
Sbjct: 759 LKEKSGAKLTEAEEKERAKNEAAMMCSLENKDACVSC 795


>gi|254565653|ref|XP_002489937.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|238029733|emb|CAY67656.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|328350349|emb|CCA36749.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris
           CBS 7435]
          Length = 867

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/784 (35%), Positives = 426/784 (54%), Gaps = 35/784 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVFKRDGHKEPVRFDKITARVSRLCYGLDPKHVDAVAITQRVISGVYHGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +  ++        LY     +  + 
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQYSQVTKE--------LYEYINPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++      L + + Y+RDF + Y G + L   Y L ING+  E PQ   M
Sbjct: 113 SPLVSEDTYNIVQKHADELNSAIVYDRDFQYNYFGFKTLERSYLLRINGNVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +  +    +E YN +S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + 
Sbjct: 173 RVAIGIHGDDIARV---IETYNFMSQKYFTHASPTLFNAGTPHPQMSSCFLVAMRDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRATGSYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+  F+D+RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHADIFAFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLADVYGDEFEELYERYEK-----EGRGRQTIKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN ++ Q+++GV+ SSNLC EI   SS EETAVCNL SI L         +  +
Sbjct: 405 MLYKDACNKKTNQKNLGVIKSSNLCCEIVEYSSPEETAVCNLASIALPAFVETDDTHCWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   R L+ +ID N + + +A++SN  +R I +G+ G   A   L IP+ S
Sbjct: 465 NFEKLHEITKVVTRNLNRIIDRNFYPVPEARRSNMRNRPIAVGVQGLADAFMKLRIPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
           PEA ++  +  E I   A+ AS ELA E GAY +F+GS   QG+   D            
Sbjct: 525 PEAKQLNIQIFETIYHAALEASNELAVEEGAYETFQGSPASQGILQYDLWDKKPSEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    W+ LK ++ + G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WEWESLKAKIVSTGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    LWD+ M + +   +GSI N+  IP+ LK ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGLWDDNMKNHIISDNGSIQNLPNIPEQLKGLYKTVWEISQKTI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN++L  P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRSAYIDQSQSLNIHLMAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGV 919
           +  V
Sbjct: 755 VDKV 758


>gi|325190738|emb|CCA25231.1| ribonucleosidediphosphate reductase large subunit p [Albugo
           laibachii Nc14]
          Length = 782

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/814 (33%), Positives = 427/814 (52%), Gaps = 39/814 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   + + C  L  + V    +  +    +Y G++ S+L+   
Sbjct: 1   MYVIKRDGRKEVVKFDKITARITKLCYNLNTEYVDPVQISQKVIAGVYPGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++     + P+++K+ AR  +  L +           K     +Q  Y          
Sbjct: 61  AETAAYCSTQHPDFSKLAARIAISNLHKNT--------NKVFSENIQLFYENKHDTTKVP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + +  +RDF ++Y G + L   Y L +NG   E PQ   M
Sbjct: 113 APLIAEDVYRVVIKNKEALNSAIIGDRDFDYDYFGFKTLEKSYLLRVNGKVCERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E  +  +E Y  +S   F  +TPTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVAVGIH---KENLEAVLETYECMSQKFFTHATPTLFNAGTPRPQLSSCFLLSMQDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A ++K++GG+G   + +R   ++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKQCACISKWAGGIGVSISNIRCTNSYIRGTNGSSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH D+ EFL+LRKN G++  R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GGKRKGSFAMYLEPWHADIFEFLELRKNHGNELHRARDLFYALWIPDLFMKRVEDNQEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L++ +G EF+  Y  YE           + + A  LW  +L    ETG P+
Sbjct: 350 LFCPNEAPRLYETWGNEFDALYLKYESMNIA-----RKTVKAQQLWFAILDSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S QQ++G + SSNLC EI   S S+E AVCNL S+ L       +F + K
Sbjct: 405 MLYKDACNRKSNQQNLGTIRSSNLCCEIIEYSDSKEVAVCNLASVALSKFVYQKEFQFTK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ +IDIN + I +A+ SN  HR IG+G+ G      L+ +P+ S  A 
Sbjct: 465 LYEITKIVTKNLNKIIDINYYPIPEAQSSNQRHRPIGIGVQGLADTFLLMGLPFESKAAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  E  E + F A+ AS+ELA+E G Y S+ GS   +G F  D   +  +         
Sbjct: 525 DLNKEIFETMYFAAMEASMELARELGPYESYSGSPVSKGTFQFDMWQVTPD--------- 575

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W  LK++V   G+RNS  +A  PTA+ A I G  +SI+P   N++ +  ++G+FT
Sbjct: 576 SGRWDWKSLKEQVAAHGIRNSLLLAPMPTASTAQILGNCESIEPFTSNMFNRRVLAGEFT 635

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN +L+ EL + +LW   + + +    GS+ NI  IP ++K+ + T +EI    +++ A
Sbjct: 636 IVNKYLMEELIEMNLWTSDVRNQILRDRGSVQNIVEIPPNVKEKYKTVWEIKQKSILDMA 695

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +I Q+QSLN+++ +P+  KL  ++  AW  GLKT  YYLR+R      + T+   
Sbjct: 696 ADRGAYICQSQSLNIHIADPTVSKLTSMHFYAWKKGLKTGMYYLRTRPRADAIQFTVDQK 755

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               +A+                    + EC VC
Sbjct: 756 SLDDSALAKLSQTQDVDE---------EEECLVC 780


>gi|145340510|ref|XP_001415366.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575589|gb|ABO93658.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 817

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/837 (34%), Positives = 444/837 (53%), Gaps = 53/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L ++  DG        ++   +++   GL  +     IV  +    ++ G++  +L+   
Sbjct: 4   LYVVKRDGREEPVAFDKITARIKKLAYGLSQEFCDPVIVAQKVCMGVFAGVTTKELDELA 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  K P+YA++ AR  +  L +          +K+    M  +Y     R  + 
Sbjct: 64  AETAASMTSKHPDYAQLAARIAVSNLHKTT--------KKSFSETMTQMYEHVNERNGKW 115

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L  ++ Y+RDF ++Y G + L   Y L I+G  +E PQ   M
Sbjct: 116 SPLLADDVYEIIKANAERLDAEIVYDRDFEYDYFGYKTLERSYLLRIDGKVVERPQHLLM 175

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+     E  ++AV+ Y++LS      ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 176 RVSIGIH---KEDIEKAVDTYHMLSERWMTHASPTLFNAGTPRPQLSSCFLIAMKEDSIE 232

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A ++K +GG+G     +R   ++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 233 GIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 292

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   Y+E WH D+ ++LDLRKN G +  R  D+    W  DLFMKRV  N  WT
Sbjct: 293 GGKRKGAFAIYIEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGDWT 352

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D +G+EFE  Y+ YE      E K  + I A  LW  +L    ETG+P+
Sbjct: 353 LMCPNECPGLADCWGEEFETLYQKYEA-----EGKGKKTIKAQQLWFAILESQVETGNPY 407

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTEI   +S EETAVCNL SI L             
Sbjct: 408 MLFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPEETAVCNLASIALPRFVIENNPSSPT 467

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                             FD+DKL    R   R L+ +ID+N + +E AK+SN  HR IG
Sbjct: 468 GRTEVKKLVGSLKAKERYFDHDKLFEITRKVTRNLNRIIDVNYYPVETAKRSNMRHRPIG 527

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+ G      LL + + SPEA ++  E  E I F A++ S  LA   G Y++++GS   
Sbjct: 528 LGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNALAVVEGPYTTYEGSPVS 587

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D  GL      +       R  W  L+  +   G+RNS  +A  PTA+ + I G
Sbjct: 588 KGILQPDMWGLTQMPGGD-------RHDWAGLRAAIAQHGVRNSLLVAPMPTASTSQILG 640

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+FTVVN  L+++L +  LWD  + + L  ++GS+ ++  I
Sbjct: 641 NNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTELGLWDPELKNSLIANNGSVADL-EI 699

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P++LK I+ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GL
Sbjct: 700 PENLKAIYKTVWEIKQRILVDMAADRGAFIDQSQSFNVHMSDPNSGKLTSLHFYAWKKGL 759

Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           KT  YYLRSR+A    K T+     ++  +   +   +  +  +  S T+  +C +C
Sbjct: 760 KTGMYYLRSRAAADAIKFTVDVKQKQVTKM-SEEEKEAYLAAKLQCSLTNKDDCVMC 815


>gi|91080433|ref|XP_968671.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005754|gb|EFA02202.1| hypothetical protein TcasGA2_TC007859 [Tribolium castaneum]
          Length = 808

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/824 (33%), Positives = 442/824 (53%), Gaps = 42/824 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +   DG     +  ++   +++ C GL  + V    +  +    +Y G++  +L+T   
Sbjct: 9   YVCKRDGRKEEVHIDKITSRIQKLCYGLNMEFVDPVSITLKVISGLYPGVTTVELDTLAA 68

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  +    P+YA + AR  +  L +E                +  L+     +   + 
Sbjct: 69  ETAAMMTTNHPDYAILAARIAVSNLHKETKKQFSDV--------IDDLHKAVSSKTGRKT 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                 H +++  +   L + + Y+RDF++ Y G + L   Y L ING  +E PQ   MR
Sbjct: 121 QMISDEHHAIVMKNADRLNSCIIYDRDFSYNYFGFKTLERSYLLKINGKIVERPQHMLMR 180

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           VA+G+   +      A+E YN +S  +F  ++PTLF++ T  PQLSSCFL T+P D+L G
Sbjct: 181 VAVGIHGSD---IDSAIETYNYMSEKYFTHASPTLFSAATPKPQLSSCFLVTLPEDNLEG 237

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGL----GAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           I   L + AM++K +GGLG     +R         + GT   S G++P L+V N++A  V
Sbjct: 238 ISRCLTQCAMISKTAGGLGVSIHNLRAKGTTFRTTLAGTPKVSDGIVPVLRVFNNSARYV 297

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QG  KR GA   YLE WH D+ +FL+L+KNTG ++ R  D+  A W PDLFM+RV  + 
Sbjct: 298 DQGGNKRPGACAIYLEPWHADILDFLNLKKNTGKEQLRARDLFFALWTPDLFMRRVKNDE 357

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P +   L D +G+EFE  YE YE      + +  R++ A  +WR +     ETG
Sbjct: 358 KWSLMCPHQSPGLADCWGEEFEKLYEKYE-----TDGRYVRQLPARDVWRAICVSQVETG 412

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615
            P++ +KD CN +S QQ++G + SSNLCTEI   +S +E AVCNL SI  N+      + 
Sbjct: 413 TPYMLYKDACNRKSNQQNLGTIRSSNLCTEIVEFTSPDEIAVCNLASIAVNMFVKADRSG 472

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D++KL    +   + L+ VID+N + + +A+KSN  HR +G+G+ G   A  LL +P+ 
Sbjct: 473 YDFNKLKEITKVVAKNLNKVIDLNYYPLPEARKSNLRHRPVGIGVQGLADAFILLRMPFD 532

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  +  +  E + + A+ AS ELA++ G Y +++GS   QGV   D  G+       
Sbjct: 533 SPEAKALNRQIFETLYYGALEASCELAEKYGPYETYEGSPVSQGVLQYDMWGVTP----- 587

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W +LKK++   G+RNS  +A  PTA+ A I G ++S +P   N+YV+  +
Sbjct: 588 -----TNLWDWSDLKKKIAKYGVRNSLLLAPMPTASTAQILGNNESTEPYTSNIYVRRVL 642

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN  L+ +L +R LWD+ M + +  + GSI NI  IPDDLK+++ T +EI    
Sbjct: 643 SGEFQVVNQHLLKDLTERGLWDDTMKNQIIANYGSIQNIPGIPDDLKQLYKTVWEISQKV 702

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R  +IDQ+QS+N+++  P+   +  ++   W  GLKT  YYLR++ A +  + 
Sbjct: 703 IIDMAADRGAFIDQSQSMNIHIAAPNYGVMSSMHFYGWDKGLKTGMYYLRTKPAANPIQF 762

Query: 915 TLKGVD---GKLNAVPVTDPNSSTHSLGIPSSCT--SDTECEVC 953
           T+            V       +T        C+  +   CE+C
Sbjct: 763 TVDKSKLITKTSTGVGKVQETKTTPEEEAALVCSLRNPEACEMC 806


>gi|86134367|ref|ZP_01052949.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
 gi|85821230|gb|EAQ42377.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
          Length = 799

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/820 (34%), Positives = 440/820 (53%), Gaps = 34/820 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C GL   V    V     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGKKEPVMFDKITARVKKMCYGLNKIVDPVKVAMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ T+    P+YAK+ AR  +  L +          +K+    M  LY     R  ++ 
Sbjct: 61  ETAATMTTAHPDYAKLAARIAVSNLHKNT--------KKSFSETMDDLYFYVNPRTEKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RDF ++Y G + L   Y L +NG   E PQ   MR
Sbjct: 113 PLLADDVYEIIKANAEKLDSTIIYNRDFNYDYFGFKTLERSYLLKLNGQIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+   +      A+  Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + G
Sbjct: 173 VSIGIHKND---IDEAIATYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLQMQDDSIEG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSLHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   YLE WH D+ +FLDL+KN G +  R  D+  A WI DLFMKRV ++  WTL
Sbjct: 290 GKRKGSFAMYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVQEDGEWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   L+D YG+EFE  Y +YE        K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPHECPHLYDTYGEEFERLYTSYEAA-----GKGRKTIKARELWEKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QF 616
            +KD  N ++ Q+++G + SSNLCTEI   ++ +E AVCNL SI L    +        F
Sbjct: 405 LYKDAVNRKTNQKNLGTIRSSNLCTEIMEYTAKDEVAVCNLASIALPMFVSERENGEKYF 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           ++ KL    +   R LD VID N + +++A+ SN  HR +GLG+ G       L +P+ S
Sbjct: 465 NHKKLFDVTKKVTRNLDTVIDANFYPVKEAENSNFRHRPVGLGIQGLADTFINLRLPFTS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++  +  E + + A+++S+E+A+ +  YS+FKGS   +G F  +  G+        
Sbjct: 525 DEAKKLNQDIFETMYYAAVTSSMEIAKAKEPYSTFKGSPMSEGEFQFNMWGVNDNEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               +    WD+L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +S
Sbjct: 582 ----SGNWDWDKLRKNVMKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLS 637

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN  L+ +L +  LWD  M   +   +GSI +IE IP +L++++ T +E+    +
Sbjct: 638 GEFIVVNKHLLEDLVELGLWDNDMKESIMRANGSIQHIEEIPSELRELYKTVWEMSMKDI 697

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A  R  +IDQ+QSLNL+L +P   KL  ++  AW  GLKT  YYLR++SA +  + T
Sbjct: 698 IDMARHRGYFIDQSQSLNLFLKDPDYGKLTSMHFYAWKSGLKTGMYYLRTKSAVNAIQFT 757

Query: 916 LKGVDGK--LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +        +       P      +        D +C +C
Sbjct: 758 VSKEKKAEVIEEEKPMTPAEFKAMVDASKGAGPDDDCLMC 797


>gi|86132509|ref|ZP_01051103.1| ribonucleoside-diphosphate reductase large chain [Dokdonia
           donghaensis MED134]
 gi|85817070|gb|EAQ38254.1| ribonucleoside-diphosphate reductase large chain [Dokdonia
           donghaensis MED134]
          Length = 874

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/800 (35%), Positives = 440/800 (55%), Gaps = 27/800 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V++ C  L D V    +     + +YDG++ S+L+    
Sbjct: 1   MYVVKRDGRQEPVMFDKITARVKKLCYELSDFVDPVKISMRVIEGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++    P+YAK+ AR  +  L +    +  +         M  LY     R  ++ 
Sbjct: 61  ETAASMTTSHPDYAKLAARISVSNLHKNTKKSFSEV--------MTDLYQYVNPRTGKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RDF ++Y G + L   Y L ING   E PQ   MR
Sbjct: 113 PMVADEVYKVIMDNKDELDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ L +    + A E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSIGIHLND---LEAAKETYMLMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     +R  GA+I GTNG S G++P LKV NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNIRAKGAYIGGTNGTSNGIVPMLKVFNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A WI DLFMKRV ++  WTL
Sbjct: 290 GKRKGSFAIYMEPWHADIFDFLDLKKNHGAEEMRARDLFYAMWISDLFMKRVQEDGKWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  DL +++G+EFE  Y  YE+     E +  R I A  LW K++    ETG P++
Sbjct: 350 MCPNECPDLFNVHGEEFEALYTKYEQ-----EERGRRTIKARELWEKIMESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     N  FD+ +L
Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEILEYTSEDEVAVCNLASIALPMFVKNGAFDHQEL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +    A + L+ VID N + + +A+ SN  HR IGLG+ G       L +P+ S EA +
Sbjct: 465 YNITVRATKNLNKVIDRNYYPVIEAENSNMRHRPIGLGVQGLADTFIKLRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A++AS ++A+  G Y SF+GS   QG F  +   +  E         +
Sbjct: 525 LNQEIFETLYFAAVTASKDMAKVEGPYQSFEGSPISQGEFQYNLWNIKDEEL-------S 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W  L+K V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWDWASLRKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L   +LW++ + + +   +GSI  I+ IP DLK+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLEDLVALNLWNDDLKAAIMRANGSIQGIDVIPADLKELYKTVWEMSMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR++SA   +K TL    
Sbjct: 698 QRGYFIDQSQSLNLFMEGANFAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAKKFTLSAKK 757

Query: 921 GKLNAVPVTDPNSSTHSLGI 940
            +      T P     +   
Sbjct: 758 KEAPVTAPTAPKQQVAARAA 777


>gi|302844064|ref|XP_002953573.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
 gi|300261332|gb|EFJ45546.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
          Length = 824

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/844 (34%), Positives = 450/844 (53%), Gaps = 58/844 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG        ++   + +   GL      + +V  +    +Y G++ S+L+  
Sbjct: 3   SMYVIKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDEL 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  L    P+YA + AR  +  L ++         +K+    M+ LY     R  +
Sbjct: 63  AAETAAALTSTHPDYAILAARIAVSNLHKKT--------KKSFSETMEALYNYKNPRTGQ 114

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E          ++  +   L ++++Y+RDF F+Y G + L   Y L +NG  +E PQ   
Sbjct: 115 EASLIDKEVFQIIIQNAARLNSEIRYDRDFDFDYFGFKTLERSYLLRMNGEVVERPQQML 174

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+     +  + A++ Y+ +S   F  ++PTLFNSGT  PQLSSCFL  + DD +
Sbjct: 175 MRVAVGIH---KDDIESAIQTYHAMSERWFTHASPTLFNSGTPRPQLSSCFLLCMRDDSI 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+Q
Sbjct: 232 DGIYDTLKECAVISKSAGGIGLSIHCIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 291

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKGA   Y+E WH DV EFLDLRKN G +  R  D+    WIPDLFM+RV  +  W
Sbjct: 292 GGGKRKGAFAIYIEPWHADVFEFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEW 351

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +LF P+E  DL + +G +FE  Y  YER     E +  + + A  LW  +L    ETG+P
Sbjct: 352 SLFCPNEAQDLAECWGADFERLYTQYER-----EGRARKVVRAQQLWFAILEAQVETGNP 406

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------- 612
           ++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L            
Sbjct: 407 YMLYKDSCNKKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPG 466

Query: 613 -------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
                        N  FD++KLA   + A R L+ +ID+N +   KA+KSN  HR IGLG
Sbjct: 467 WESKKLVGSLDAPNRFFDFEKLAEMTQMATRNLNKIIDVNYYPHPKAQKSNMRHRPIGLG 526

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G      +L +P+ SPEA E+  +  E I + A+SAS ELA+  G Y +++GS   QG
Sbjct: 527 VQGLADTFIILGMPFDSPEAAELNRQIFEVIYYAALSASCELAERDGTYETYEGSPVSQG 586

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +   D  G+             SR  W  L+ R+   G+RNS  +A  PTA+ + I G +
Sbjct: 587 ILQPDMWGVKPTGVG-------SRCDWPALRDRIARHGVRNSLLVAPMPTASTSQILGNN 639

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +  +P   N+YV+  +SG+FTVVN  L+++L +  LW   + ++L   +GS+ +++ IP 
Sbjct: 640 ECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGLWSPELKNELVAANGSVADLD-IPV 698

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GLKT
Sbjct: 699 ELKALYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKT 758

Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS---------LGIPSSCTSDTE 949
             YYLR+++A    K T+              P  S  +           +  S  +   
Sbjct: 759 GMYYLRTKAAADAIKFTVDQQALSRKKASNPPPTLSLPTGKFSVGAQLAAMVCSLENKEA 818

Query: 950 CEVC 953
           C +C
Sbjct: 819 CLMC 822


>gi|295659650|ref|XP_002790383.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb01]
 gi|226281835|gb|EEH37401.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb01]
          Length = 878

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/803 (34%), Positives = 428/803 (53%), Gaps = 33/803 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNRRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAIGIHGDDVERV---IETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L       +  +D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I    ++AS ELA+  G YSS++GS   QG+   D  G+          
Sbjct: 525 AKLLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGI 940
               K+    V   N +      
Sbjct: 755 QEQLKVADTNVARVNGAMKKRAA 777


>gi|255710753|ref|XP_002551660.1| KLTH0A04686p [Lachancea thermotolerans]
 gi|238933037|emb|CAR21218.1| KLTH0A04686p [Lachancea thermotolerans]
          Length = 879

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/815 (34%), Positives = 424/815 (52%), Gaps = 37/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +       +Y+G++  +L+   
Sbjct: 1   MFVYKRDGRREPVKFDKITARVSRLCYGLDPNHVDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      +      H+           +    
Sbjct: 61  AETCAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVSDLFHY--------VNPKNGIH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISQEVFDIIQKHKDELNSAIVYDRDFQYNYFGFKTLERSYLLRINGEVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+         + +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + 
Sbjct: 173 RVAVGIHGD---NIPKVIETYNLMSLKYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A W+PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L D+YG EFE  YE Y +     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLSDVYGDEFEALYERYVQ-----EGRGRKTIKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------N 614
           + +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S++L A           
Sbjct: 405 MLYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASLSLPAFIETSEDGQTQ 464

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++DKL    +     L+ VID N + +E A+ SN  HR + LG+ G   A  +L IP+
Sbjct: 465 WYNFDKLHEIAKVVTHNLNQVIDRNYYPVESARNSNMRHRPVALGVQGLADAFMILRIPF 524

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA E+  +  E I   A+  S ELA E G Y +F+GS   QG+   D          
Sbjct: 525 DSQEAKELNIQIFETIYHAALERSNELAVEHGPYETFEGSPASQGILQFDMWDKKP---- 580

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 T    W+ LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 581 ------TDLWDWETLKAKIVKTGLRNSLLLAPMPTASTSQILGNNECFEPYTSNMYSRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN +L+ +L    +W++AM S +   +GSI N+  IP  LK ++ T +E+   
Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWNDAMKSHIISDNGSIQNLPNIPQKLKDLYKTVWELSQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +IE A+ R  +IDQ+QSLN+++  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 695 TIIEMAADRACYIDQSQSLNVHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            T+      +      D  +    L +P       
Sbjct: 755 FTIDKSVASMAGDKEADLQNLHRPLYVPRKMNFSE 789


>gi|50305185|ref|XP_452551.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641684|emb|CAH01402.1| KLLA0C07887p [Kluyveromyces lactis]
          Length = 875

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/815 (34%), Positives = 433/815 (53%), Gaps = 37/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    + +  +       +Y+G++  +L+   
Sbjct: 1   MFVYKRDGHKEPVQFDKITARVSRLCYGLDAKHIDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      +            LY     R    
Sbjct: 61  AETCAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVD--------DLYQWVNPRTGIH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF F Y G + L   Y L I+G   E PQ   M
Sbjct: 113 SPMISDEVYKIVMDNKDTLNSAIVYDRDFQFNYFGFKTLERSYLLRIDGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGNDIERV---LETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   Y+E WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFALYIEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNQDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D YG+EF         +    E +  + + A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLPDAYGEEF-----EEMYERYEREGRGRKTVKAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN++S Q+++G + SSNLC EI   S   ETAVCNL SI L A           
Sbjct: 405 MLYKDACNLKSNQKNLGTIKSSNLCCEIVEYSDPTETAVCNLASIALPAFIERSTDGKTQ 464

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            ++++KL S  +   R L+ +ID N + +E A++SN  HR I LG+ G   A  +L +P+
Sbjct: 465 TYNFEKLHSIAKVLTRNLNRIIDRNYYPVETARRSNMRHRPIALGVQGLADAFMMLRLPF 524

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA ++  E  E I   A  AS+ELA+E G Y +F GS   QG    D  G       
Sbjct: 525 DSEEAKKLNIEIFETIYHGACEASMELAKEEGHYETFPGSPASQGQLQFDLWGKTP---- 580

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 T+   W+ LK+++K  GMRNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 581 ------TALWDWNTLKEQIKLNGMRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN +L+++L    +WDEAM S +   +GSI N+  IP +LK ++ T +E+   
Sbjct: 635 LSGEFQIVNPYLLHDLVDLGIWDEAMKSHIIADNGSIQNLPNIPQELKDLYKTVWELSQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  +IDQ+QSLN+++  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 695 HIIDMAADRAAYIDQSQSLNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            T+     +  A  V D +     + IP   + + 
Sbjct: 755 FTIDKSVAEQAANSVVDLSKLNRPVYIPHKASVND 789


>gi|294948956|ref|XP_002785979.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|294948958|ref|XP_002785980.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900087|gb|EER17775.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900088|gb|EER17776.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/820 (33%), Positives = 440/820 (53%), Gaps = 41/820 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G        ++   +     GL +  V    +  +  + +Y G++ ++L++ 
Sbjct: 2   VMYVIKRNGQKADVQFDKITRRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH-HEMQCLYPEYFCRYI 260
              +   + +  P+++ + AR  +  L +           +     + +  +       +
Sbjct: 62  AAETCAYMSQVHPDFSTLAARIAVSNLHKNTHEKFSDTVTELYQITDGRGRHAPLVSEEV 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQ 318
              V A          +   L   + YERDF ++Y G + L   Y L    + S IE PQ
Sbjct: 122 YNIVMA----------NAEKLDKAIDYERDFDYDYFGFKTLERSYLLKRPSDKSCIERPQ 171

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
              MRVA+G+   +      A+E Y+L+S+  F  +TPTLFNSGT HPQ+SSCFL ++  
Sbjct: 172 HMIMRVAVGIHGDD---VDAAIETYDLMSTRVFTHATPTLFNSGTPHPQMSSCFLLSMKG 228

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L++ AM++K +GG+G   T +R   ++I GTNG S G++P L+V NDTA  
Sbjct: 229 DSIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTARY 288

Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG KRKG+   YLE WH DV EFLDL+KN G + +R  D+  A WIPDLFMKRV  N
Sbjct: 289 VDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVMSN 348

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             WTLF P+E   L D YG EFE  YE YE+     +    + + A +LW K+L    ET
Sbjct: 349 GDWTLFCPNEAPGLQDTYGDEFEALYEKYEK-----DGIGRKTVKAQSLWFKILESQQET 403

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANN 614
           G P++ +KD  N +S Q+++G +  SNLC EI   +S +E AVCNL SI  N+       
Sbjct: 404 GIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKKTR 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +D+D+L    +   R L+ VID N + + +A++SN  HR IG+G+ G   A  L+  PY
Sbjct: 464 TYDFDRLHRVTKVVTRNLNKVIDRNYYPVPEARRSNMRHRPIGIGVQGLADAFLLMRFPY 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SPEA+++ +E  E I   A  AS+ELA++ G Y +F+GS   +G+   D   +  +   
Sbjct: 524 ESPEALKLNNEIFETIYHAACEASMELAKKDGPYETFEGSPASEGILQFDMWDVTPD--- 580

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 + R  W+ LK+ +K  GMRNS  +A  PTA+ A I G +++ +P  QN+YV+  
Sbjct: 581 ------SGRWDWNSLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           ++G+F  VN  LV++L +  LW++ +   +    GS+  +E IP ++++++ T +EI   
Sbjct: 635 LAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRQKGSVQGVEEIPKEVQELYKTVWEIKQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +IDQ+QSLN+++   +  KL  ++   W +GLKT  YYLR+++A    +
Sbjct: 695 KILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            TL      +     +     T  L        +  C  C
Sbjct: 755 FTLDAKKITME----SPLKPRTSPLKPQYVQEDEETCIAC 790


>gi|297821381|ref|XP_002878573.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
 gi|297324412|gb|EFH54832.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 817

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/844 (34%), Positives = 448/844 (53%), Gaps = 64/844 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +   +H                
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFNH-----------VNDRS 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+K+ L+ + + D    +   L +++ Y+RDF ++Y G + L   Y L + G+ +E PQ 
Sbjct: 110 GLKSPLIADDVFDIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRVA+G+     +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD
Sbjct: 170 MLMRVAVGIH---KDDIDSAIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286

Query: 439 NQGGKRK--GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           +QGG ++  GA   YLE WH DV EFL+LRKN G +  R  D+  A W+PDLFM+RV  N
Sbjct: 287 DQGGGKRKEGAFAVYLEPWHADVFEFLELRKNHGKEEHRARDLFYALWVPDLFMERVQSN 346

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+LF P+E   L D +G EFE  Y  YER     E K  + + A  LW ++LT   ET
Sbjct: 347 GQWSLFCPNEAPGLADCWGAEFETLYTKYER-----EGKAKKVVQAQQLWYEILTSQVET 401

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----- 611
           G P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L         
Sbjct: 402 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGV 461

Query: 612 ---------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
                           N  FD+DKLA    T    L+ +ID+N + +E AK SN  HR I
Sbjct: 462 PLDSHPSKLAGSLGSKNRYFDFDKLAEVTATVTLNLNKIIDVNYYPVETAKTSNMRHRPI 521

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+ G   A  LL +P+ SPEA ++  +  E I +HA+ AS ELA   G Y ++ GS  
Sbjct: 522 GIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAARVGPYETYSGSPV 581

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G+   D   ++   R            W  L+  +   G+RNS  +A  PTA+ + I 
Sbjct: 582 SKGILQPDMWNVIPSNR----------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQIL 631

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI N+  
Sbjct: 632 GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAE 691

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IPDDLK I+ T +EI    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  G
Sbjct: 692 IPDDLKAIYRTVWEIKQRTVVDMAVDRGCYIDQSQSLNIHMDKPNFAKLTSLHFYAWTKG 751

Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTE 949
           LKT  YYLRSR+A    K T+     K           V + ++ T    +  S T+  +
Sbjct: 752 LKTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPDD 811

Query: 950 CEVC 953
           C  C
Sbjct: 812 CLAC 815


>gi|212528622|ref|XP_002144468.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073866|gb|EEA27953.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 872

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/807 (34%), Positives = 433/807 (53%), Gaps = 33/807 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                ++ LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAVLAARIAVSNLHKQTKKQFSAV--------IEDLYHYVNPKNNKA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISGEMYETVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  ++A+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVAVGIHG---ENIEKAIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKSAGGIGLNVHRIRATGSYIGGTNGTSNGLVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFM+RV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E S L D+YG+EF+  YE YER     E +  R + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEASGLADVYGEEFDALYEKYER-----EGRGRRTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL S+ L       +  +D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +IDIN + + +AKKSN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS+ELA+E G Y +++GS   QG+   D              
Sbjct: 525 AKQLNIQIFETIYHGALTASIELAKEHGTYETYEGSPVSQGILQYDMWERTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKAQISQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAYIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSC 944
               K+    V   N  +       + 
Sbjct: 755 QEQLKVEDTNVARANGISKKRSPAPAA 781


>gi|326469969|gb|EGD93978.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326484125|gb|EGE08135.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           equinum CBS 127.97]
          Length = 875

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/797 (34%), Positives = 427/797 (53%), Gaps = 33/797 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF ++Y G + L   Y L  NG   E PQ   M
Sbjct: 113 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  ++ +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EFE  YE YE+     E +    I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L       +  +D+
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +          
Sbjct: 525 AKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSS 934
               K+    V   N++
Sbjct: 755 QEQLKVVDTNVARTNAA 771


>gi|121706584|ref|XP_001271554.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399702|gb|EAW10128.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 859

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/806 (34%), Positives = 430/806 (53%), Gaps = 33/806 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNNNP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L I+G   E PQ   M
Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNYFGFKTLERSYLLRISGKVAERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + EK   A+E Y+L+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + 
Sbjct: 173 RVAVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EF+  YE YE+     E +    I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFDALYERYEK-----EGRGRSTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS ELA++ G Y +++GS   QG+   D              
Sbjct: 525 ARQLNTQIFETIYHGALTASCELAKQLGPYETYEGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKAKIAQSGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943
               K+    V   N +       ++
Sbjct: 755 QEQLKVADTNVARANPAFKKRAAGAT 780


>gi|114635717|ref|XP_001159515.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 1
           [Pan troglodytes]
          Length = 779

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/802 (35%), Positives = 449/802 (55%), Gaps = 33/802 (4%)

Query: 159 SKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY 216
             ++   +++ C GL    V    +  +  + +Y G++  +L+T    ++ TL  K P+Y
Sbjct: 2   FDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDY 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
           A + AR  +  L +E         +K     M+ LY        +           ++  
Sbjct: 62  AILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLA 113

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+     E  
Sbjct: 114 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDI 170

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K
Sbjct: 171 DAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 230

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLET 454
            +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE 
Sbjct: 231 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 290

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++
Sbjct: 291 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 350

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ
Sbjct: 351 GEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 405

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLD 633
           ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+
Sbjct: 406 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 465

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + 
Sbjct: 466 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 525

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++
Sbjct: 526 ALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKI 575

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R
Sbjct: 576 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 635

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSL
Sbjct: 636 GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 695

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDP 931
           N+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL          V   + 
Sbjct: 696 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEE 755

Query: 932 NSSTHSLGIPSSCTSDTECEVC 953
               ++  +  S  +  EC +C
Sbjct: 756 EKERNTAAMVCSLENRDECLMC 777


>gi|46121591|ref|XP_385350.1| hypothetical protein FG05174.1 [Gibberella zeae PH-1]
          Length = 913

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/825 (34%), Positives = 434/825 (52%), Gaps = 51/825 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA- 201
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTIQLDDLV 60

Query: 202 -----------------LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
                               ++  +    P+YA + AR  +  L ++         +K  
Sbjct: 61  SGVCTMTVVTSANPILQAAETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQW 112

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
              +  LY     +               +      L + + Y+RDF + Y G + L   
Sbjct: 113 SAVVSDLYHWVNPKNDRASPMISKETYECVMRHKEELDSAIVYDRDFNYNYFGFRTLSRS 172

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y L I+G   E PQ   MRVA+G+   + E+    +E YNL+SS  F  ++PTLFN+GT 
Sbjct: 173 YLLQIDGKIAERPQHMIMRVAVGIWGDDIERV---LETYNLMSSKFFTHASPTLFNAGTP 229

Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
            PQLSSCFL  +  D + GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G
Sbjct: 230 QPQLSSCFLVDMKEDSIDGIYDTLKTCAMISKMAGGIGLNAHRIRATGSYIAGTNGTSNG 289

Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           ++P L+V N+TA  V+QG  KR GA   YLE WH DV EFLDLRKN G +  R  D+  A
Sbjct: 290 IVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLA 349

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
            WIPDLFMKRV +N  WTL  P+E   L D YG EFE  YE YER     E K  + I A
Sbjct: 350 LWIPDLFMKRVERNGEWTLMCPNECPGLADCYGDEFEALYEKYER-----EGKGRKSIKA 404

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW  +L    ETG+P++ +KD CN +S Q+++G + SSNLCTEI    + +E AVCNL
Sbjct: 405 QKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNL 464

Query: 603 GSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            S++L +   + +  +D+ KL    +  VR L+ +ID+N + +++A+ SN  HR IGLG+
Sbjct: 465 ASLSLPSFINYEDACYDFKKLHEVTQVVVRNLNKIIDVNHYPVQEARNSNMRHRPIGLGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A   L +P+ SPEA E+  +  E I   A++ SV+LA+E G YS+FKGS   +G+
Sbjct: 525 QGLADAFLALRMPFESPEARELNKQIFETIYHAALTTSVQLAKEEGPYSTFKGSPASEGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D             +  +    W+ L++ VKT G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQFDMWN----------VKPSDLWDWEPLREDVKTHGIRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  ++G+F VVN +L+ +L    LW +AM + +   +GSI NI  IP +
Sbjct: 635 CFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIADNGSIQNIPNIPAE 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           +K ++ T +EI    +++ A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT 
Sbjct: 695 IKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            YYLR+++A +  + T+   + K+                   S 
Sbjct: 755 MYYLRTQAAAAPIQFTVDQENLKIADSNSASIKPLGKRAPPAGSS 799


>gi|89890042|ref|ZP_01201553.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
 gi|89518315|gb|EAS20971.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
          Length = 828

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/849 (34%), Positives = 447/849 (52%), Gaps = 63/849 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++  DG        ++   V + C GL + V    V       +YDG++ S+L+    
Sbjct: 1   MFVVKRDGHKEPVMFDKITARVRKLCYGLSNHVDPVKVAMRVIDGLYDGVTTSELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ T+    P+YA++ AR  +  L +    T               LY     R  ++ 
Sbjct: 61  ETAATMTTAHPDYARLAARISVSNLHKNTKKTFTDVVT--------DLYEYVNPRTEKKA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y RDF ++Y G + L   Y L ING   E PQ   MR
Sbjct: 113 PMISDEVYQVIQDNADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGKIAERPQHMLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           V++G+ + +      A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+ DD + G
Sbjct: 173 VSVGIHMDD---LDAAIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  L++ A +++ +GG+G     +R  G++I GTNG S G++P LKV NDTA  V+QGG
Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ +FLDL+KN G +  R  D+  A W+ DLFMKRV  N  WTL
Sbjct: 290 GKRKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E  DL+++YG EFE  Y  YE+     E K  + I A  LW K+L    ETG P++
Sbjct: 350 MCPHECPDLYNVYGDEFEALYTKYEQ-----EGKGRKTIQARELWDKILESQIETGTPYM 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L     +  FD+  L
Sbjct: 405 LYKDAANNKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKDGAFDHKAL 464

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +   R L+ VID N + + +A+ SN  HR +GLG+ G   A  +L +P+ S EA +
Sbjct: 465 YKVTKRVTRNLNKVIDRNYYPVIEARNSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKK 524

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E + F A  AS+E+AQE GAYS+F+GS   QG F  +   +          + +
Sbjct: 525 LNSEIFETLYFAACEASMEMAQEEGAYSTFEGSPMSQGEFQFNMWNIN-------DSDLS 577

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W +L+ +V   G+RNS  +A  PTA+ + I G +++ +P   N+Y +  +SG+F V
Sbjct: 578 GRWNWSDLRTKVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIV 637

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  L+ +L    LWD+++ + +  ++GSI  IE IP+D+K+++ T +E+    +I+ + 
Sbjct: 638 VNKHLLKDLVDLGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSR 697

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           +R  +IDQ+QSLNL+++  +  KL  ++  AW  GLKT  YYLR+++A    K T+    
Sbjct: 698 QRGYFIDQSQSLNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTVTKEA 757

Query: 921 GKL------------------------------------NAVPVTDPNSSTHSLGIPSSC 944
            K                                      +  +T        L    + 
Sbjct: 758 KKAPVAQPAVAPVLIEDHSPAAAKVMEAAADIINTKVVTESEEMTAAEYKEILLRAKEAA 817

Query: 945 TSDTECEVC 953
           ++  +CE+C
Sbjct: 818 SNGDDCEMC 826


>gi|321259241|ref|XP_003194341.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           gattii WM276]
 gi|317460812|gb|ADV22554.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus gattii WM276]
          Length = 863

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/807 (35%), Positives = 424/807 (52%), Gaps = 33/807 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + I   DG        ++   + +   GL    V    +  +  + ++ G++  +L+  
Sbjct: 2   VMWIYKRDGRKEPVAFDKVTARINKLSYGLDPNFVEPAEITQKVVQGIHAGITTVELDNL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  L  K P+YA + AR  +  L +E         +K     +  L+     +  +
Sbjct: 62  AAETAAYLTTKHPDYAILAARIAISNLHKET--------KKVFSAVVHDLHAWVNPKTGK 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                      ++  +   L + + Y+RDFA+ Y G + L   Y L ING  +E PQ   
Sbjct: 114 HSPMIDDEVYKVVMDNKDILDSAIIYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMI 173

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+         + +E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + DD +
Sbjct: 174 MRVAVGIHGA---NIDKVIETYNLMSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSI 230

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A ++K +GG+G     +R  G++I GTNG S G+IP L+  + TA  V+Q
Sbjct: 231 DGIYDTLKTCAQISKTAGGIGLHIHNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQ 290

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH DV +F+DLRKN G +  R  D+  A WIPDLFMKRV  +  W
Sbjct: 291 GGNKRPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDW 350

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P E   L D+YG+EFE  YE+YERQ      K  + I A  LW  +L    ETG P
Sbjct: 351 TLMCPAECPGLADVYGEEFEKLYESYERQ-----GKGRKTIKAQKLWFAILEAQTETGVP 405

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617
           +I +KD  N +S Q+H+G + SSNLCTEI   SS +E AVCNL S+ L A        +D
Sbjct: 406 YICYKDAANSKSNQKHLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYD 465

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   + LD VI  N + + +A+ SN  HR +GLG+ G   A   L +P+ S 
Sbjct: 466 FKKLHEITKVVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSL 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E+  +  E I   A+ AS ELA+E+G Y S++GS   +G+   D  G +        
Sbjct: 526 EARELNIQIFETIYHAALEASCELAEEQGTYESYEGSPLSKGILQYDMWGRVP------- 578

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W ELK ++   G+RNS  +A  PTA+ + I G ++  +P    LY +  +SG
Sbjct: 579 ---TDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSG 635

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           DF VV  +L+ +L   DLWD+ M   +    GSI +I  IPDDLKKI+ T +EI    +I
Sbjct: 636 DFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVI 695

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN++L  PS  +L  ++   W  GLKT  YYLR+R + +  + T+
Sbjct: 696 DLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTI 755

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                K      +    S      P +
Sbjct: 756 DASTLKTAKNLSSSAKPSPTPSPAPGA 782


>gi|224082486|ref|XP_002306711.1| predicted protein [Populus trichocarpa]
 gi|222856160|gb|EEE93707.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/834 (33%), Positives = 441/834 (52%), Gaps = 51/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++   GL        +V  +    +Y G++ + L+   
Sbjct: 1   MYVIKRDGRQEPVRFDKITARLKKLSYGLSNDHCDPVLVAQKVCAGVYRGVTTTQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++    P+YA + AR  + +L +          +K+    ++ +Y        ++
Sbjct: 61  AETAASMTANHPDYALLAARISVSRLHKNT--------KKSFSETIELMYNNLNKGSGQK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L ++G  +E PQ   M
Sbjct: 113 APLIADDVYEIIMKNAERLDSEILYDRDFEYDYFGFKTLERSYLLKVDGKIVERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +  + A + Y+L+S   F  +TPTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIESATKTYHLMSQSWFTHATPTLFNAGTAQPQLSSCFLLCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +   G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKECAVISKLAGGIGIAVHNIHATGSYIRGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  +  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFLALWIPDLFMERVRGDDKWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G+EFE  Y  YER     E +  + ISA  LW ++L    ETG P+
Sbjct: 350 LFCPSEAPGLADCWGQEFEKLYTQYER-----EDRAKKIISARKLWFEILNSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTE+   +S  ETAVCNL S+ L             
Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASVALPRFVMERGVPAES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD++KLA    T    L+ +ID+N + +E A++SN  HR IG+G+
Sbjct: 465 QSSKMVGSRESKNRYFDFEKLAEVTTTITANLNKIIDVNYYPVETARRSNLRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ S EA  +  +  E I +HA+ +S ELA + G Y ++ GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSSEAKRLNKDIFETIYYHALRSSSELAAKDGPYETYCGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
             +D  G+    R            WD L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQMDMWGVTPSDR----------WDWDALREMISKSGVRNSLLIAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F V+N  L+N+L +  LW   + + +    GS+  I  IP+ 
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVMNKHLLNDLTEMGLWSPVLKNKIINESGSVSKIPEIPEQ 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A+ R  +IDQ+QSLN+++++P   KL  ++  AW  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDLGKLTSLHFHAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+             + + ++       S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTTVLNNENANKAEDDVNSDMAQAACSLQNREECMAC 808


>gi|299743194|ref|XP_001835601.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
 gi|298405544|gb|EAU86172.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
          Length = 895

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/782 (35%), Positives = 416/782 (53%), Gaps = 31/782 (3%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                   ++   + + C GL    V    V  +    +Y G++  +L+     ++  L 
Sbjct: 34  RKERVQFDKITARISKLCYGLDLNFVDPIEVAQKVVVGVYQGVTTVELDNLAAETAAYLT 93

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            K P+YA + AR  +  L +E   +  +         M+ LY     +  +         
Sbjct: 94  TKHPDYAVLAARIAVSNLHKETKKSFSQV--------MKDLYEYVNPKNGKPAGMISKET 145

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
             ++  +   L + + Y RDF + Y G + L   Y L +NG   E PQ   MRVA+G+  
Sbjct: 146 WEVIRDNADTLDSAIIYNRDFNYNYFGFKTLERSYLLRLNGRVAERPQHMIMRVAVGIHG 205

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQE 389
           ++ ++    +E YNL+S  +F  ++PTLFN+GT HPQLSSCFL  + DD + GI+  L+ 
Sbjct: 206 RDIDRV---LETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGIYDTLKN 262

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAV 448
            AM++K +GG+G +   +R  G++I GTNG S G++P L+  + TA  V+QG  KR GA 
Sbjct: 263 CAMISKTAGGIGLNIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAF 322

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             Y+E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV  +  W+LF P+E  
Sbjct: 323 AIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEADGEWSLFCPNEAP 382

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            LHD++  EFE  YE YE+     E +  + I A  LW  +L    ETG P++ +KD  N
Sbjct: 383 GLHDVHSAEFEELYERYEK-----EGRARKTIRAQKLWYAILEAQIETGGPFMVYKDHAN 437

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            +S Q+++G + SSNLCTEI   SS +ETAVCNL S+ L     +  +D+ KL    +  
Sbjct: 438 AKSNQKNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIKDGVYDFKKLHEVTKVV 497

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
              L+ +ID+N + I +A++SN  HR IG+G+ G   A   L +P+ S  A E+  +  E
Sbjct: 498 TYNLNRIIDVNYYPIPEARRSNMRHRPIGIGVQGLADAFMALRMPFDSQAAKELNLQIFE 557

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A+ AS E+A   G Y +++GS   QG    D  G          +  +    W  
Sbjct: 558 TIYHAALEASSEIAARDGPYETWEGSPASQGQLQYDLWG----------VKPSDLWDWAS 607

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV  +L+ 
Sbjct: 608 LKAQIAKTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLR 667

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           EL    LWD+ M + +  H+GS+ NI  IP D+K I+ T +EI    +I+ A+ R  +I 
Sbjct: 668 ELVDLGLWDDNMKNLIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVIDLAADRGAFIC 727

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q+QSLN++L  P+  +L  ++   W  GLKT  YYLR+R A    + T+     K     
Sbjct: 728 QSQSLNVHLSAPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSLLKAAKEQ 787

Query: 928 VT 929
             
Sbjct: 788 TQ 789


>gi|302418985|ref|XP_003007323.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
 gi|261352974|gb|EEY15402.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
          Length = 903

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/805 (35%), Positives = 432/805 (53%), Gaps = 33/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVRKRDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K     +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNNRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMIAPETYEFVMKHKEELDSAIVYDRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E+    +E YNL+SS  F  ++PTLFN+GT   QLSSCFL  + DD + 
Sbjct: 173 RVSVGIWGDNVERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G+ P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGITPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D YG EFE  YE YE+       K  + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADCYGDEFEALYEKYEKA-----GKGRKTIKAQKLWYAVLEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L A+   N   +D+
Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAYVDYNNGVYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +ID+N + + +A+ SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 KKLHQVTQVVVRNLNRIIDVNHYPVIEARNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+  +  E I   A++ S +LAQE G YS+++GS   QG+   D             +
Sbjct: 525 AKELNKQIFETIYHAALTMSCKLAQEEGPYSTYEGSPVSQGILQYDMWN----------V 574

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W +LK ++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 575 KPTDLWDWADLKSQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW ++M + +   +GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWEISQRTVVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ +P+  K+  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942
               K+    V    S      +PS
Sbjct: 755 KEALKVADTNVGKERSLKKRSPMPS 779


>gi|103488896|gb|ABF71875.1| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 923

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/805 (34%), Positives = 428/805 (53%), Gaps = 33/805 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++ + L+   
Sbjct: 1   MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     R  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------ISELYNYVNPRTGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV E LDLRKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFESLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D+YG EFE  YE YE+     E K  + + A  LW  +L    ETG+P+
Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVC L S+ L A        +D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCYLASLALSAFIDYENASYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  VR L+ +IDIN + +++A  SN  HR IG+G+ G   A   L +P+ S  
Sbjct: 465 KKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDA 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS +LA+E+G Y++++GS   QG+   D   +          
Sbjct: 525 ASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W  LK  +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L +  LW +AM + +    GSI NI+ IP+D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVK 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W MGLKT  YYLR+++A    + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942
               +     V   +S       P+
Sbjct: 755 QEALRATDDRVAPAHSGLKKRSPPA 779


>gi|223999029|ref|XP_002289187.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
 gi|220974395|gb|EED92724.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
          Length = 813

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/837 (33%), Positives = 441/837 (52%), Gaps = 54/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S    +++  + + C GL    V+  ++  +  + +Y G++ ++L+   
Sbjct: 1   MYVVKRDGKKQSCQFDKIQSRISKLCYGLDQKFVNEAVISQKVIQGVYPGVTTTELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ +   + P+YA + AR  +  L +E      K  +          Y     +  E 
Sbjct: 61  AQTAASFSTQHPDYAVLAARIEVSNLHKETEKQFSKVVE--------AFYNYTHPKTGEP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     +++ +   L   + ++RDF F+Y G + L   Y L ++G   E PQ   M
Sbjct: 113 APLVSKEVYDVVNANKDVLDGAVIHDRDFEFDYFGYKTLEKSYLLKLHGEIAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RV++G+ + + E+    +E YNLLS   F  +TPTLFN+GT +PQ+SSCFLT +  D + 
Sbjct: 173 RVSVGIHMGDIERV---LETYNLLSQRFFTHATPTLFNAGTPNPQMSSCFLTCIKADSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++KY+GG+G   + VR   ++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKNCAVISKYAGGIGMSISNVRASASYIRGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG++ AY+E WH D+  FLDLRKN G++  R  D+  A WIPDLFM+RV QN  WT
Sbjct: 290 GGKRKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L   +G+EF+  YE YER     E K  + I A  LW  +L    ETG P+
Sbjct: 350 LMCPNECPGLDTCWGEEFKTLYEKYER-----EGKGRKTIKAQQLWFAVLDSQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------- 613
           + +KD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL SI+L             
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEIAVCNLASISLSKFVTPADNFGGE 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD + L    +   + L+ VID N + +E+A++SN  HR IG+G+ G   A  ++ +P
Sbjct: 465 GHFDLENLKHISKVVTKNLNRVIDRNFYPVEEARRSNMRHRPIGIGVQGLADAFMMMKLP 524

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + SPEA ++  +  E I F A  AS+ELA++ G Y +++GS   +G    D  G+     
Sbjct: 525 FESPEARQLNKDIFETIYFGACEASMELAEQEGPYETYEGSPASKGQLQFDMWGVEP--- 581

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  ++   W  LK ++   GMRNS  MA  PTA+ A I G ++S +P   N+Y + 
Sbjct: 582 -------SNLWDWAGLKAKIAQHGMRNSLLMAPMPTASTAQILGNNESTEPFTSNMYNRR 634

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+FT+VN  L+ EL    LW E + + +    GS+  +  IP  ++ ++ T +EI  
Sbjct: 635 VLAGEFTIVNKHLLRELTANGLWTERVRNQIIAQGGSVQAVADIPKSIRDVYKTVWEIPQ 694

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +++ A+ R  +I Q+QS+N+++ EPS  KL  ++  AW  GLKT  YYLR+R      
Sbjct: 695 RAILDMAADRGAFICQSQSMNVHIGEPSTSKLTSMHFYAWKKGLKTGMYYLRTRPKADAI 754

Query: 913 KSTLK-----GVDGKLNAVPVTDPNSSTHSLGIPSSC-----------TSDTECEVC 953
           + T+          K     +    S T                      + EC  C
Sbjct: 755 QFTVNQEMLAESTSKPAQDQLERNPSPTSVTAAGKVSVNSKFAGLQMKDEEEECLNC 811


>gi|151944785|gb|EDN63044.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|190405633|gb|EDV08900.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|259145984|emb|CAY79244.1| Rnr1p [Saccharomyces cerevisiae EC1118]
 gi|323333854|gb|EGA75244.1| Rnr1p [Saccharomyces cerevisiae AWRI796]
 gi|323348888|gb|EGA83125.1| Rnr1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355271|gb|EGA87096.1| Rnr1p [Saccharomyces cerevisiae VL3]
          Length = 888

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/812 (34%), Positives = 425/812 (52%), Gaps = 38/812 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +         LY        + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVALGIHGRDIE---AALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A          +
Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+
Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D          
Sbjct: 524 DSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            T+           V D ++      +PSS +
Sbjct: 754 FTIDQKIADQATENVADISNLKRPSYMPSSAS 785


>gi|323449664|gb|EGB05550.1| hypothetical protein AURANDRAFT_30730 [Aureococcus anophagefferens]
          Length = 787

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/818 (33%), Positives = 430/818 (52%), Gaps = 42/818 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIKKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +  + P+++ + AR  +  L +    T     +K        L+     +  + 
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEK--------LHKHVHPKTKKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    + +      +   + Y+RDF ++Y G + L   Y + ++G+  E PQ   M
Sbjct: 113 AALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   +      A+E Y ++S   F  +TPTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVALGIHGDD---LAGALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYIRGSNGTSNGIVPMLRVYNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N  W+
Sbjct: 290 GGKRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGSWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    ETG P+
Sbjct: 350 LMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWFAILDSQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616
           + +KD CN +S Q+H+G + SSNLCTEI   ++ +E AVCNL SINL AH   +     F
Sbjct: 405 MLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLTAHVEGSGDAATF 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL  T     + L+ VID+N + +E+AK SN  HR IG+G+ G   AL  L  PY S
Sbjct: 465 DFAKLKRTAYVVTKNLNKVIDVNYYPVEEAKSSNLKHRPIGIGVQGMADALVKLRYPYES 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  I  +  E I F A+ AS++LA+E G Y S++GS   QG+F  D            
Sbjct: 525 DDAKRINKDVFETIYFGAMEASIDLARELGPYDSYEGSPTSQGLFQFDLWN--------- 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +  + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N+Y +  ++
Sbjct: 576 -VKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L  R LW   + + +    GS+  +  IPDDLK ++ T +EI    +
Sbjct: 635 GEFAVVNKYLLQDLIARGLWTSEIRNQIIADKGSVQGVAAIPDDLKALYKTTWEIKQKCV 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R        T
Sbjct: 695 LDMSADRGAFICQSQSLNLHIADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFT 754

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +                              + EC  C
Sbjct: 755 VDQ-------AMAAKSRGGAALKPANGQQEEEHECLSC 785


>gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae]
 gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae]
          Length = 812

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/835 (35%), Positives = 436/835 (52%), Gaps = 42/835 (5%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192
            K+    + KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G
Sbjct: 2   LKNKTLKSSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+      S  L     +YA + AR  +  L +E         +K      + LY
Sbjct: 62  VTTQELDNLAAEISAGLTCNHADYAILAARIAVSNLHKET--------RKVFSDVFEALY 113

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                            H +++  +   L + + Y+RDF + Y G + L   Y L ING 
Sbjct: 114 THVNKETNLRAPLVSEFHYNVVKKNADRLNSSIIYDRDFGYNYFGFKTLERSYLLKINGK 173

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + T  PQLSSCF
Sbjct: 174 VAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V 
Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+ A  V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D+  A WIPDLFM
Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFM 350

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  N  W+L  P +   LHD++G EFE  Y  YE+     E +  R + A +LW  ++
Sbjct: 351 KRVEANEDWSLMCPHKCPGLHDVWGDEFEKLYVKYEQ-----EGRANRTVKAQSLWFAII 405

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG+P++ FKD CN +S QQ+VG +  SNLCTEI   SS +E AVCNL SI L   
Sbjct: 406 ESQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMF 465

Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ KL    +T  R L+ +IDIN + + +AKKSN  HR IG+G+ G   AL L
Sbjct: 466 VTPEKTYDFKKLKEVTKTVARNLNKIIDINFYPLPEAKKSNMRHRPIGIGVQGLADALIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  PY S EA  +  +  E I F A+ AS ELAQ+ G Y +++GS   +G+   D     
Sbjct: 526 MRYPYESEEASLLNQQIFETIYFGALEASCELAQKDGTYETYEGSPVSKGILQYDMWDKT 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    W  LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+
Sbjct: 586 P----------TGLWDWKSLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE IP  ++ ++ T +
Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIESIPQKVRDLYKTVW 695

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A
Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755

Query: 909 TSVEKSTLKG----------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  + T+               K  +    + +       +  S  +   C  C
Sbjct: 756 ANAIQFTVDKKMSALKINGQNGVKEESAQDYESDRERKMADMVCSLENKDACMSC 810


>gi|6320914|ref|NP_010993.1| Rnr1p [Saccharomyces cerevisiae S288c]
 gi|730514|sp|P21524|RIR1_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 1;
           AltName: Full=Ribonucleotide reductase R1 subunit 1;
           AltName: Full=Ribonucleotide reductase large subunit 1
 gi|93278634|pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278635|pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278636|pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279171|pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279172|pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279173|pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279174|pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279175|pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279176|pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279177|pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279277|pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
           With Ligands And Subunit Peptides
 gi|197107210|pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|197107212|pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|290560304|pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
           With Designed Adp Analog Compound
 gi|323714514|pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714515|pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714516|pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714517|pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|603306|gb|AAB64606.1| Rnr1p: Ribonucleotide reductase [Saccharomyces cerevisiae]
 gi|256271462|gb|EEU06516.1| Rnr1p [Saccharomyces cerevisiae JAY291]
 gi|285811701|tpg|DAA07729.1| TPA: Rnr1p [Saccharomyces cerevisiae S288c]
          Length = 888

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/812 (34%), Positives = 425/812 (52%), Gaps = 38/812 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +         LY        + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVALGIHGRDIE---AALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A          +
Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+
Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D          
Sbjct: 524 DSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------YGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            T+           V D ++      +PSS +
Sbjct: 754 FTIDQKIADQATENVADISNLKRPSYMPSSAS 785


>gi|323305248|gb|EGA58995.1| Rnr1p [Saccharomyces cerevisiae FostersB]
          Length = 888

 Score =  690 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/812 (34%), Positives = 423/812 (52%), Gaps = 38/812 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +         LY        + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+        + A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVALGIHG---XDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A          +
Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+
Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D          
Sbjct: 524 DSEEARLLNIQIFETIYXASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            T+           V D ++      +PSS +
Sbjct: 754 FTIDQKIADQATENVADISNLKRPSYMPSSAS 785


>gi|28422346|gb|AAH46846.1| RRM1 protein [Xenopus laevis]
          Length = 760

 Score =  690 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/779 (35%), Positives = 436/779 (55%), Gaps = 32/779 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL  + V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARVAVSNLHKET--------KKIFSDVMEDLYNYVNPLNSKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ + G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+          A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KTDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L +++G +FE  YE YER     E +  + + A  +W  ++    ETG P+
Sbjct: 350 LMCPHECPGLEEVWGDKFEELYEKYER-----EGRTRKVVKAQQVWHAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +    + FD+ 
Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +I+IN + + +A+ SN  HR IG+G+ G   A  L+  P+ S +A
Sbjct: 465 KLADVTKVIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ +S ELA+E G Y +++G    +G+   D   +           
Sbjct: 525 QMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F
Sbjct: 576 -TDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L ++ LW+E M + +  ++GSI N+  IP DLK+++ T +EI    +I  
Sbjct: 635 QIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL 
Sbjct: 695 AADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 753


>gi|254580061|ref|XP_002496016.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
 gi|238938907|emb|CAR27083.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
          Length = 921

 Score =  690 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/815 (33%), Positives = 429/815 (52%), Gaps = 37/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   + + C GL    + +  +       +Y+G++  +L+   
Sbjct: 1   MFVYKRDGRKEPVRFDKITARISKLCYGLDPSHIDAVKITQRIISGVYEGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      +         +  LY          
Sbjct: 61  AETCAYMTTVHPDYATLAARIAVSNLHKQTTKQFSQV--------ISDLYHYVNPANGVH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L + + Y+RDF F Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISDEIFNIVMTNKDELNSAIVYDRDFQFNYFGFKTLERSYLLRINGLTAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E  K A+E YNL+S  +F+ ++PTLFN+GT HPQ++SCFL  + DD + 
Sbjct: 173 RVSLGIHG---EDIKSAIETYNLMSLRYFIHASPTLFNAGTPHPQMASCFLVAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDSLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNEEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L D+YG+EFE  YE YE+     E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLADVYGEEFEKLYERYEQ-----EGRGRKTIRAQKLWYAILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN +S Q+++GV+ SSNLC EI   S  +ETA CNL SI L +           
Sbjct: 405 MLYKDACNEKSNQKNLGVIKSSNLCCEIVEYSDKDETAACNLASIALPSCVEVSADGKEQ 464

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            + + KL    +   R L+ VID N + + +AK+SN  HR I LG+ G      +L +P+
Sbjct: 465 WYSFAKLHEVAKAITRNLNKVIDRNYYPVPEAKRSNMRHRPIALGVNGLADTFMMLRLPF 524

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SPEA  +  +  E I   A+  S ELA+  G YS+++GS   QG+   D          
Sbjct: 525 ESPEAKILNQQIFETIYHGALEQSCELAKIHGTYSTYEGSPISQGLLQFDLW-------- 576

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               N +    W+ L++ +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 577 --EKNPSELWDWEPLRQGIKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN +L+ +L    +WDE+M   +   +GSI NI  IP ++K ++ T +EI   
Sbjct: 635 LSGEFQIVNPYLLKDLVDLGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWEISQR 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 695 HVLDMAADRAVFIDQSHSLNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            T+           +T          +P       
Sbjct: 755 FTIDKNVAAQAGRNITTLPELPRPKYVPRGVNMVE 789


>gi|119188101|ref|XP_001244657.1| hypothetical protein CIMG_04098 [Coccidioides immitis RS]
          Length = 893

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/796 (34%), Positives = 428/796 (53%), Gaps = 33/796 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V +  +  +    +Y G++  +L+     ++  
Sbjct: 23  DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAY 82

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++                +  LY     +          
Sbjct: 83  MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYINPKNNRPAPMISQ 134

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
               ++      L + + Y+RDF ++Y G + L   Y L ING   E PQ   MRVA+G+
Sbjct: 135 KTYEIVMKHSAELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGI 194

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
             ++ EK   A+E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + GI+  L
Sbjct: 195 HGEDIEK---AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 251

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG  KR G
Sbjct: 252 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPG 311

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E
Sbjct: 312 AFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 371

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG EFE  YE YE+     E +  + I A  LW  +L    ETG+P++ +KD 
Sbjct: 372 APGLADVYGDEFEALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDA 426

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624
           CN +S Q+++G + SSNLCTEI   +S +E AVCNL S+ L  +    +  +D+ KL   
Sbjct: 427 CNRKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEV 486

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +  VR L+ +ID N + + +A+KSN  HR I +G+ G   A   L +P+ SPEA ++  
Sbjct: 487 TQVLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNI 546

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E I   A++AS ++A+  G Y +++GS   QG+   D   +            T   
Sbjct: 547 QIFETIYHAALTASCDIAKVDGPYETYEGSPVSQGILQYDMWNVTP----------TDLW 596

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 597 DWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 656

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R 
Sbjct: 657 WLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 716

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+     K+
Sbjct: 717 AYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 776

Query: 924 NAVPVTDPNSSTHSLG 939
               V   +      G
Sbjct: 777 ADTNVARSSVVGKKRG 792


>gi|330929115|ref|XP_003302526.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
 gi|311322081|gb|EFQ89385.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
          Length = 889

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/816 (33%), Positives = 431/816 (52%), Gaps = 35/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +         LY     +  + 
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVVE--------DLYTYVNPKNGKS 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF +++ G + L   Y L ING   E PQ   M
Sbjct: 113 QPMISDHVYKIIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++  K   A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGEDIPK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D+YG EFE  YE+YE+Q      K    + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEKQN-----KGRETVRAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ S E
Sbjct: 465 QKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A+++S ++A+E G Y +++GS   QG+   D   +          
Sbjct: 525 AKKLNIQIFETIYHAALTSSCDIAKELGPYQTYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    +I+
Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAV--PVTDPNSSTHSLGIPSSCTSDTECE 951
               K+         P        +P +  S  E E
Sbjct: 755 QEQLKVADTNIAKALPKIRKQPGFVPEAVRSAPESE 790


>gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group]
          Length = 814

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/838 (34%), Positives = 447/838 (53%), Gaps = 55/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNERSGLN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 APLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +  + A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EFE  Y  YER     E K  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYTKYER-----EGKAKKIVPAQTLWFDILKAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA    T    L+ +IDIN + +E AK+SN  HR IG+G+
Sbjct: 465 HPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ SPEA ++  +  E I FH++ AS ELA + G Y +++GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W  L+  +  +G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVVPSDR----------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  +W  A+ + + + DGS+  +  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIFEDGSVQKMTEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+     K N         + +       +  S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812


>gi|115398293|ref|XP_001214738.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
 gi|114192929|gb|EAU34629.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
          Length = 886

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/806 (34%), Positives = 430/806 (53%), Gaps = 33/806 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+     
Sbjct: 25  VFPADGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAE 84

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  +    P+YA + AR  +  L ++             H+           R  +   
Sbjct: 85  TAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLFHY--------VNPRNNKPAP 136

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                    +      L + + Y+RDF + + G + L   Y L ING   E PQ   MRV
Sbjct: 137 MISKETYETVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRV 196

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383
           A+G+   + EK   A+E Y+L+S  +F  ++PTLF++GT  PQL+SCFL  +  D + GI
Sbjct: 197 AVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFSAGTPQPQLASCFLVDMKEDSIEGI 253

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
           +  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  
Sbjct: 254 YDTLKTCAMISKNAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGN 313

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF
Sbjct: 314 KRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLF 373

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P+E   L D+YG EF+  YE YE+     E +  R + A  LW  +L    ETG+P++ 
Sbjct: 374 CPNEAPGLADVYGDEFDALYEKYEK-----EGRGRRTVKAQKLWYAILEAQTETGNPFML 428

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L       +  +D+ K
Sbjct: 429 YKDACNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTFVDATRGEYDFGK 488

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + + +A+KSN  HR I LG+ G   A   L +P+ SPEA 
Sbjct: 489 LHEVVQVLVRNLNKIIDINYYPVPEARKSNMRHRPIALGVNGLADAFLALRLPFDSPEAK 548

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   A++AS +LA+E G Y +++GS   QG+   D                
Sbjct: 549 QLNIQIFETIYHGALTASSDLAKELGPYETYEGSPVSQGILQYDMWDRTP---------- 598

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F 
Sbjct: 599 TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQ 658

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++ A
Sbjct: 659 VVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRTILQMA 718

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+   
Sbjct: 719 ADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQE 778

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCT 945
             K+    V   +++        + +
Sbjct: 779 QLKVADTNVARVSAAYKKRTGAPASS 804


>gi|328864042|gb|EGG13141.1| hypothetical protein MELLADRAFT_41450 [Melampsora larici-populina
           98AG31]
          Length = 871

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/778 (34%), Positives = 428/778 (55%), Gaps = 31/778 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETALIF 204
           +   DG        ++   + + C GL +V      +  +    +++G++  +L+     
Sbjct: 4   VYKRDGRRERVAFDKITARINKLCYGLDNVHVEPIEITKKVINGVFNGVTTVELDNLAAE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  +  + P+YA + AR  +  L +E         +K     ++ LY     +      
Sbjct: 64  TAAYMTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLYRYVNPKNGRPSP 115

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                    +  +   L + + Y+RDF + Y G + L   Y L I+    E PQ   MRV
Sbjct: 116 MISDETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIDNKVAERPQHMLMRV 175

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383
           A+G+   + ++   A+  YNL+S  +F  ++PTLFNSGT HPQLSSCFL ++  D + GI
Sbjct: 176 AVGIHGTDVDR---AIRTYNLMSEKYFTHASPTLFNSGTPHPQLSSCFLVSMKSDSIDGI 232

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
           +  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  
Sbjct: 233 YDTLKTCAMISKTAGGIGLNIHDIRATGSYIAGTNGYSNGIVPMLRVFNNTARYVDQGGN 292

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA   Y+E WH DV ++LDLRKN G +  R  D+  A WIPDLFM+RV  N  W LF
Sbjct: 293 KRPGAFAIYIEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMQRVEDNGDWPLF 352

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E   L D+YG+ FE  ++ YE+     E +  + + A  LW  +L    ETG+P++ 
Sbjct: 353 CPAEAPGLSDVYGEAFEKLFDQYEK-----EGRAKKTVKAQKLWYAILEAQTETGNPFML 407

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD  N +S Q+++G + SSNLCTEI   S+ +E AVCNL SI L  +  +  +D+ KL 
Sbjct: 408 YKDAANRKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYITDGVYDFQKLH 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +     L+ +ID+N + + +AKKSN  HR IG+G+ G   A  +L +P+ SPEA ++
Sbjct: 468 EVTKEVTWNLNRIIDVNYYPVPEAKKSNMRHRPIGIGVNGLADAFQILKLPFDSPEAKKL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E +   A+ AS ELA   GAY +F GS    G    D  G+            + 
Sbjct: 528 NAQIFETLYHAALEASNELAVAEGAYETFPGSPASLGELQYDMWGVTP----------SD 577

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              WD+LK+R+K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +V
Sbjct: 578 LWKWDDLKERIKATGLRNSLLLAPMPTASTSQIMGFNECFEPYTSNIYTRRVLAGEFQIV 637

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +L+ EL +  LW++ M + +  H GSI NI  IP  +K ++ T +EI    +I+ A+ 
Sbjct: 638 NPWLLKELVEMGLWNDEMKNRIIAHQGSIQNIPDIPTKMKAVYKTVWEISQKVIIDLAAD 697

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           R  +IDQ+QSLN++L  P+  +L  ++  AW  GLKT  YYLR+R+A +  + T+   
Sbjct: 698 RGAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDKK 755


>gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group]
          Length = 814

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/838 (34%), Positives = 447/838 (53%), Gaps = 55/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNERSGLN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 APLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +  + A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EFE  Y  YER     E K  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYTKYER-----EGKAKKIVPAQTLWFDILKAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA    T    L+ +IDIN + +E AK+SN  HR IG+G+
Sbjct: 465 HPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ SPEA ++  +  E I FH++ AS ELA + G Y +++GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W  L+  +  +G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVVPSDR----------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  +W  A+ + + Y DGS+  +  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+     K N         + +       +  S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812


>gi|224083844|ref|XP_002307143.1| predicted protein [Populus trichocarpa]
 gi|222856592|gb|EEE94139.1| predicted protein [Populus trichocarpa]
          Length = 817

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/840 (34%), Positives = 445/840 (52%), Gaps = 56/840 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          QK+    ++ +Y  +  +   +
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------QKSFSETIKIMYNHFNDKSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 AALIADDIYEIIMKNSARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIDSAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSAHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEENRARDLFYALWVPDLFMERVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +GKEFE  Y  YER       K  + + A  LW ++L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGKEFEELYTRYER-----NGKAKKVVQAQNLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------ 614
           + FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPVES 464

Query: 615 --------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                          FD++KLA         L+ +ID+N + +E A++SN  HR IG+G+
Sbjct: 465 HPSKLVGSRGFKSRYFDFEKLAEVTGVVTSNLNKIIDVNYYPVETARRSNFRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL + + SPEA ++  +  E I +HA+ AS E+A   G Y +++GS   +G+
Sbjct: 525 QGLADTFILLGMSFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYEGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+                 WD L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWGVTPSN---------LLWDWDALREMISKNGVRNSLLLAPMPTASTSQILGNNE 635

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y DGS+ NI  IP+D
Sbjct: 636 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQNIPEIPND 695

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 696 LKFIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 755

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD------PNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+     +   +           +  T    +  S  +  +C  C
Sbjct: 756 MYYLRSRAAADAIKFTVDTSVLQDKKLKSDGAAAAAADDDDTKMAQMVCSLANRDDCLAC 815


>gi|168046427|ref|XP_001775675.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672948|gb|EDQ59478.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/837 (34%), Positives = 444/837 (53%), Gaps = 54/837 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGRQESVHFDKITARLKKLSYGLNPEHCEPVLVAQKVCMGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y     R   +
Sbjct: 61  AETAAAMTANHPDYAILAARIAVSNLHKNT--------KKSFSETVKDMYRHVNARSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 113 SPLIDDDVYDLIIKNAALLDSEIIYDRDFDYDYFGFKTLERSYLLRVNGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLY 381
           RV++G+     +     ++ Y+ +S   F  ++PTLFN+GT  PQLSSCFL  T  D + 
Sbjct: 173 RVSVGIH---KDNIDAVLKTYHTMSQRWFTHASPTLFNAGTPRPQLSSCFLVCTKGDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ ++LDLRKN G +  R  D+    WIPDLFM+RV +N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEENRARDLFYGLWIPDLFMRRVQENGVWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G+EFE  Y  YE      E K  + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADCWGEEFEKLYTRYE-----VEGKAKKVVQAQKLWFAVLEAQIETGNPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---------- 610
           I FKD CN +S QQ++G + SSNLCTEI   +S +ETAVCNL SI L             
Sbjct: 405 ILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASIALPRFVRERGVPMDS 464

Query: 611 ----------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                     + +  FD++KL        R L+ +ID+N + +E A++SN  HR IGLG+
Sbjct: 465 HPTKVIGSNGYESRYFDFEKLGEITSLVTRNLNRIIDVNYYPVEAARRSNMRHRPIGLGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL +P+ S EA ++  +  E I +HA+  S ELA E G Y ++ G    +G+
Sbjct: 525 QGLADAFILLGMPFDSEEAQKLNRDIFETIYYHALRTSCELAAEEGVYETYDGCPISKGL 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D             +  +SR  WD L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMW----------DVKPSSRWDWDALRRMIAKNGVRNSLLLAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+N+L    LW + + + + YH+GSI  I+ IP  
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTDLGLWTQDLKNQIIYHNGSIQQIDAIPAG 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LKKI+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++  +W  GLKT 
Sbjct: 695 LKKIYRTVWEIKQRAIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYSWTKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+     K            +       +  S  +  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDQSSIKTKQATPAAAIAEDLEVKLSQMVCSLENKEECMSC 811


>gi|20178449|ref|NP_619870.1| CPXV083 protein [Cowpox virus]
 gi|20153067|gb|AAM13528.1|AF482758_79 CPXV083 protein [Cowpox virus]
          Length = 771

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/814 (34%), Positives = 441/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+        + A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIESAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L D++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDDVWGDEFERLYTQYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK ++++ G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWDWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW+E + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PPVVCDSEICTSC 769


>gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa
           Japonica Group]
          Length = 814

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/838 (34%), Positives = 447/838 (53%), Gaps = 55/838 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNERSGLN 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 APLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +  + A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTTRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EFE  Y  YER     E K  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYTKYER-----EGKAKKIVPAQTLWFDILKAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA    T    L+ +IDIN + +E AK+SN  HR IG+G+
Sbjct: 465 HPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ SPEA ++  +  E I FH++ AS ELA + G Y +++GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W  L+  +  +G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVVPSDR----------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  +W  A+ + + Y DGS+  +  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+     K N         + +       +  S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812


>gi|154297725|ref|XP_001549288.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10]
 gi|150858403|gb|EDN33595.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10]
          Length = 909

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/782 (35%), Positives = 428/782 (54%), Gaps = 33/782 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    + +  +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKERVQFDKITARVSRLCYGLDPDHIDAAAITQKVISGVYQGVNTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K   H ++ LY     R    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSHVIRDLYQYTNPRNGTA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMISKQTYECVMRHEEELNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E    A+E YNL+S+ +F  ++PTLF++GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIHGDDIE---SAIETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  GA+I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKICAMISKNAGGIGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D+YG EFE  YE+YE+       K  + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEKA-----GKGRKTIKAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E A CNL SI L          +D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +IDIN + + +A+KSN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 QKLHEVVQVVVRNLNKIIDINYYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I   A+++SVE+A+E G Y +++GS   +G    D  G+          
Sbjct: 525 AKHLNIQIFETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK+ +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDSLKQSIKQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS+N+++ +P+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GV 919
             
Sbjct: 755 QE 756


>gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata]
          Length = 810

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/834 (34%), Positives = 447/834 (53%), Gaps = 51/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRPEAVHFDKITARLKKLSYGLTQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R  +E
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKLMYHHFNERSGQE 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L ++G  +E PQ   M
Sbjct: 113 APLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVSGMVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     +  K  +  Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVAVGIH---KDDIKSVIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFL+LRKN G +  R  D+  A WIPDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADMYEFLELRKNHGKEEHRARDLFYALWIPDLFMERVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EFE  Y  YE      E K  + ++A  LW ++L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYLKYE-----DEGKAKKVVAAQNLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKL          L+ +ID+N + +E A++SN  HR IG+G+
Sbjct: 465 HPSRLVGSSGSKNRYFDFDKLGEVTAIITENLNKIIDVNYYPVETARRSNLRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ SPEA ++  +  E I +HA+ +S E+A   G Y +++GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKSSSEIAISSGPYETYQGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D             +  + R  W  L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWN----------VTLSDRWDWAALREMISKNGVRNSLLIAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y DGS+  I  IPD+
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVLKIPEIPDN 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 695 LKAIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+     +    PV D +       +  S  +  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDTSLLQKTTKPVEDDDVEAKMAQVVCSLENREECMAC 808


>gi|296827688|ref|XP_002851208.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
 gi|238838762|gb|EEQ28424.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
          Length = 874

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/808 (34%), Positives = 428/808 (52%), Gaps = 33/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF ++Y G + L   Y L  NG   E PQ   M
Sbjct: 113 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+     E  ++ +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHG---EDVEKVIESYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EFE  YE YE+     E +    I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L       +  +D+
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  V+ L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVTQVVVKNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E +   A++AS ELA+  G YSS++GS   QG+   D   +          
Sbjct: 525 AKLLNIQIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWDALKTEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
               K+    V   N +       +  T
Sbjct: 755 QEQLKVVDTNVARANGAMRKRVAAAGST 782


>gi|67528364|ref|XP_661984.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|40741107|gb|EAA60297.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|259482810|tpe|CBF77645.1| TPA: ribonucleoside-diphosphate reductase large chain (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 865

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/791 (35%), Positives = 426/791 (53%), Gaps = 33/791 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V +  +  +    +Y G++  +L+     ++  
Sbjct: 21  DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAY 80

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++                +  LY     +  +       
Sbjct: 81  MTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNKKPAPMISK 132

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
               ++      L + + Y+RDF + + G + L   Y L ++G   E PQ   MRVA+G+
Sbjct: 133 ETYEIVMKHAEELNSAIVYDRDFNYNFFGFKTLERSYLLRLDGKIAERPQHLLMRVAVGI 192

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
              + E+   A+E YNL+S  +F  ++PTLFN+GT  PQL+SCFL  +  D + GI+  L
Sbjct: 193 HGNDIER---AIETYNLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTL 249

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 250 KTCAMISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 309

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WTLF P+E
Sbjct: 310 AFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNE 369

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG EF+  YE YE+     E +  R I A  LW  +L    ETG+P++ +KD 
Sbjct: 370 APGLADVYGDEFDALYEQYEK-----EGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDA 424

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLAST 624
           CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L         ++D+ KL   
Sbjct: 425 CNKKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDASRGEYDFGKLHEV 484

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           ++  VR L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ S EA ++  
Sbjct: 485 VQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEAKQLNI 544

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E I   A++AS  LA+E G Y S++GS   QG+   D                T   
Sbjct: 545 QIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGILQYDMWERTP----------TDLW 594

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 595 DWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 654

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GS+ NI  IPDD+K ++ T +EI    ++E A+ R 
Sbjct: 655 WLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEISQRRILEMAADRG 714

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN++L EP+  K+  ++   W MGLKT  YYLR+ +A++  + T+     K+
Sbjct: 715 AYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKV 774

Query: 924 NAVPVTDPNSS 934
               V   +  
Sbjct: 775 ADTNVARTSKK 785


>gi|195050620|ref|XP_001992932.1| GH13371 [Drosophila grimshawi]
 gi|193899991|gb|EDV98857.1| GH13371 [Drosophila grimshawi]
          Length = 821

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/835 (34%), Positives = 434/835 (51%), Gaps = 51/835 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLYVIKRDGRQEEIHFDKITSRIQKLCYNLNMDFVDPVSITLKVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               + +L  +  +YA + AR  +  L +E         +K      + LY        E
Sbjct: 71  AAEIAASLTTQHADYALLAARIAVSNLHKET--------RKVFSDVFEDLYKHINKETNE 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   H +++      L + + Y+RDF + Y G + L   Y L IN    E PQ   
Sbjct: 123 PSPMVSEFHYNIVKKHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINHKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380
           MRV++G+   +      AVE YNLLS  +F  ++PTLF + T  PQ+SSCFL T+  D +
Sbjct: 183 MRVSIGIHGDD---IDAAVETYNLLSERYFTHASPTLFAAATNRPQMSSCFLLTMVSDSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ AM++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCAMISKAAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH D+ EF+DL+KNTG +  R  ++  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDILEFMDLKKNTGKEEHRARELFYALWIPDLFMKRVEANEDW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D++G +FE  Y  YE+     E K  R I A  LW  ++    ETG P
Sbjct: 360 SLMCPHKCPGLQDVWGDDFEKLYVQYEK-----EGKANRVIKAQTLWFAIIEAQVETGTP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L     ++  +D+
Sbjct: 415 YMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTSDKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +T  + L+ +IDIN + + +AKKSN  HR IG+G+ GF  AL L+  PY S E
Sbjct: 475 KKLKEVTKTVTKNLNKIIDINYYPLPEAKKSNFRHRPIGIGVQGFADALILMRHPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I F A+ AS ELAQ+ G Y ++ GS   +G+   D  G           
Sbjct: 535 AALLNQQIFETIYFGALEASCELAQKEGPYETYPGSPVSKGILQYDMWGKTP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W+ LK  +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TDLWDWNSLKLSIKEHGVRNSLLVAPMPTASTAQIMGNNESFEPYTSNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI NIE IP +++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIIASRGSIQNIESIPKNVRDLYKTVWEISVKTTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVA 764

Query: 918 GVDGKLNA-------------------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                      V  +D         +  S  +   C  C
Sbjct: 765 KGSPVKQTNGLHNTSFVEHNDSMENGNVSESDLERERKMADVVCSLENKDACLSC 819


>gi|260061081|ref|YP_003194161.1| putative ribonucleoside-diphosphate reductase large chain
           [Robiginitalea biformata HTCC2501]
 gi|88785213|gb|EAR16382.1| probable ribonucleoside-diphosphate reductase large chain
           [Robiginitalea biformata HTCC2501]
          Length = 812

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/787 (36%), Positives = 435/787 (55%), Gaps = 27/787 (3%)

Query: 159 SKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217
             ++   V + C GL D V    V     + +YDG++ S+L+      + TL    P+YA
Sbjct: 2   FDKITARVRKLCYGLSDLVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATLTTTHPDYA 61

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
           K+ AR  +  L +          +K+    M+ LY     R  ++          ++   
Sbjct: 62  KLAARISVSNLHKNT--------KKSFSETMKDLYEYVNPRTGKKAPLVADDVFEVIQKH 113

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
              L + + Y RDF ++Y G + L   Y L +NG  +E PQ   MRV++G+ L +     
Sbjct: 114 ADTLDSMIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHLDD---LD 170

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396
              E Y L+S  +F  +TPTLFNSGT  PQ+SSCFL  + DD + GI+  L++ A +++ 
Sbjct: 171 AVRETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYNTLKQTAKISQS 230

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455
           +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QGG KRKG+   YLE W
Sbjct: 231 AGGIGLSIHNIRATGSYIAGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPW 290

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ +FL+L+KN G +  R  D+  A WI DLFMKRV  +A WTL  P+E   L+  + 
Sbjct: 291 HADIFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMCPNECPGLYTTHS 350

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  Y  YE+     E K  + I A  LW K+L    ETG P++ +KD  N +S Q++
Sbjct: 351 EEFEELYLKYEK-----EGKGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKN 405

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +G + SSNLCTEI   ++ +E AVCNL SI L     N +FD+ +L    +   + L+ V
Sbjct: 406 LGTIRSSNLCTEILEYTAEDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTKNLNRV 465

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID N + I++A+ SN  HR IGLG+ G      LL +P+ S EA ++  E  E + + A 
Sbjct: 466 IDRNYYPIKEAENSNMRHRPIGLGVQGLADTFILLRLPFTSDEAKKLNREIFETLYYAAA 525

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS+E+A+E G YSS++GS   QG F  +  G+  +         + R  W++L+K +K 
Sbjct: 526 TASMEMAKEEGPYSSYEGSPISQGQFQHNLWGIEDKEL-------SGRWDWEKLRKSIKK 578

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+ +L    L
Sbjct: 579 NGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSLGL 638

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W+E M  +L   +GSI +I+ IPD++K+++ T +E+    +I+ + +R  +IDQ+QSLNL
Sbjct: 639 WNENMKQELMRANGSIQHIDAIPDNIKELYQTVWELSMKDIIDMSRQRGYFIDQSQSLNL 698

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +++  +  KL  ++  AW  GLKT  YYLR+++A    K TL     K+           
Sbjct: 699 FMENANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTKKKVEVPEAVVTEEG 758

Query: 935 THSLGIP 941
                  
Sbjct: 759 VAPEKAK 765


>gi|169603614|ref|XP_001795228.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
 gi|111066086|gb|EAT87206.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
          Length = 903

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/802 (33%), Positives = 426/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYHGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                   LY     +  + 
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVVS--------DLYTYVNPKNGKS 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF +++ G + L   Y L ING   E PQ   M
Sbjct: 113 QPMISDYIYKIIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ EK   A+E Y+ +S  +F  ++PTLFN+GT +PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGEDIEK---AIETYDYMSQKYFTHASPTLFNAGTPNPQMSSCFLIDMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D+YG EFE  Y  YER     E K    + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADVYGDEFEELYTRYER-----ENKGRETVRAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIVEFTAPDEVAVCNLASLALPSFVDYKRGEFDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL        R L+ +I++N + +E+A++SN  HR IGLG+ G   A   L +P+ SPE
Sbjct: 465 HKLHEVTMVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGLGVQGLADAFLALRLPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A+++S ++A+E G Y++++GS   +G    D  G+          
Sbjct: 525 AKKLNTQIFETIYHAALTSSCDIAKELGPYATYEGSPVSKGQLQYDLWGVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWDWASLKDKIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    +I+
Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIQRIPNIPEETKTLYKTVWEISQRTIIQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               ++    V      T    
Sbjct: 755 QEALQVTDTNVARALPKTRKQP 776


>gi|156101822|ref|XP_001616604.1| ribonucleoside-diphosphate reductase large chain [Plasmodium vivax
           SaI-1]
 gi|148805478|gb|EDL46877.1| ribonucleoside-diphosphate reductase large chain, putative
           [Plasmodium vivax]
          Length = 848

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/842 (33%), Positives = 440/842 (52%), Gaps = 48/842 (5%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
                      + ++   G     +  ++   ++    GL + V    V       MY G
Sbjct: 31  KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   +L+     +   +    P+++ + AR   + L +     + +  +    +      
Sbjct: 91  IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIGEVAEALYKYTDVRGR 150

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           P      I + V   ++           L  ++ Y RDF ++Y G + L   Y L ING 
Sbjct: 151 P---ASLISKEVYEFMI------EHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINGK 201

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE PQ   MRV++G+ + +    ++A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCF
Sbjct: 202 IIERPQHLLMRVSIGIHIGD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L  +  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V 
Sbjct: 259 LLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFM
Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV +N  WTL  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L
Sbjct: 379 KRVKENKNWTLMCPNECPGLSESWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAIL 433

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L   
Sbjct: 434 QSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493

Query: 611 F--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +F++ KL    +   R LD +I+ N + +E+AK+SN  HR IG+G+ G      
Sbjct: 494 VDVEKREFNFKKLYEITKIITRNLDQIIERNYYPVEEAKRSNKRHRPIGIGVQGLADTFM 553

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           LL  PY S  A E+     E + + A+  S+ELAQ  G Y +++GS   QG+   D   +
Sbjct: 554 LLRYPYESDSAKELNKRIFETMYYGALEMSMELAQLYGPYETYQGSPASQGILQFDMWNV 613

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             + +            WDELK ++K  G+RNS  +A  PTA+ + I G ++S +P   N
Sbjct: 614 KVDKK---------YWDWDELKAKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP DLK+++ T 
Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTV 724

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++
Sbjct: 725 WEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784

Query: 908 ATSVEKSTLKGVDGKLNA----------------VPVTDPNSSTHSLGIPSSCTSDTECE 951
           AT   K T+     K  A                  ++  ++ T ++  P    +D +C 
Sbjct: 785 ATDAIKFTVDTQVAKNAAKMKNAEPVAITREVSRETISTDSTVTQNVVCPLRRNNDDQCL 844

Query: 952 VC 953
           +C
Sbjct: 845 MC 846


>gi|58267480|ref|XP_570896.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134112167|ref|XP_775272.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257927|gb|EAL20625.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227130|gb|AAW43589.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 863

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/808 (35%), Positives = 423/808 (52%), Gaps = 33/808 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + I   DG        ++   + +   GL    V    +  +  + ++ G++  +L+  
Sbjct: 2   VMWIYKRDGRKEPVAFDKVTARINKLSYGLDPNFVEPAEITQKVVQGIHAGITTVELDNL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  L  K P+YA + AR  +  L +E         +K     +  L+     +  +
Sbjct: 62  AAETAAYLTTKHPDYAILAARIAISNLHKET--------KKVFSAVVHDLHAWVNPKTGK 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                      ++  +   L + + Y+RDFA+ Y G + L   Y L ING  +E PQ   
Sbjct: 114 HSPMIDDDVYKIVMDNKDILDSAIIYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMI 173

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+         + +E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + DD +
Sbjct: 174 MRVAVGIHG---SNIDKVIETYNLMSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSI 230

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A ++K +GG+G     +R  G++I GTNG S G+IP L+  + TA  V+Q
Sbjct: 231 DGIYDTLKTCAQISKTAGGIGLHIHNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQ 290

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH DV +F+DLRKN G +  R  D+  A WIPDLFMKRV  +  W
Sbjct: 291 GGNKRPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDW 350

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P E   L D+YG+EFE  YE+YER     + K  + I A  LW  +L    ETG P
Sbjct: 351 TLMCPAECPGLADVYGEEFEKLYESYER-----KGKGRKTIKAQKLWFAILEAQTETGVP 405

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617
           +I +KD  N +S Q+ +G + SSNLCTEI   SS +E AVCNL S+ L A        +D
Sbjct: 406 YICYKDAANSKSNQKQLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYD 465

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +   + LD VI  N + + +A+ SN  HR +GLG+ G   A   L +P+ SP
Sbjct: 466 FKKLHEITKVVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSP 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E+  +  E I   A+ AS ELA+E G Y S++GS   +G+   D  G +        
Sbjct: 526 EARELNIQIFETIYHAALEASCELAEEFGTYESYEGSPISKGILQYDMWGRVP------- 578

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W ELK ++   G+RNS  +A  PTA+ + I G ++  +P    LY +  +SG
Sbjct: 579 ---TDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSG 635

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           DF VV  +L+ +L   DLWD+ M   +    GSI +I  IPDDLKKI+ T +EI    +I
Sbjct: 636 DFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVI 695

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN++L  PS  +L  ++   W  GLKT  YYLR+R + +  + T+
Sbjct: 696 DLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTV 755

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
                K      +    S      P + 
Sbjct: 756 DASTLKTAKSLNSSAKPSPTPSPAPGAS 783


>gi|302657477|ref|XP_003020459.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
 gi|291184296|gb|EFE39841.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
          Length = 872

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/791 (34%), Positives = 426/791 (53%), Gaps = 33/791 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V +  +       +Y G++  +L+     ++  
Sbjct: 4   DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++                ++ LY     +          
Sbjct: 64  MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IEDLYHYVNPKNGRPAPMISE 115

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
               ++      L + + Y+RDF ++Y G + L   Y L  NG   E PQ   MRVA+G+
Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
                E  ++ +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + GI+  L
Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E
Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG+EFE  YE YE+     E +    I A  LW  +L    ETG+P++ +KD 
Sbjct: 353 APGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDS 407

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624
           CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L       +  +D+ KL   
Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPEA  +  
Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNT 527

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E +   A++AS ELA+  G YSS++GS   QG+   D   +            T   
Sbjct: 528 QIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 578 DWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R 
Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 697

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+     K+
Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 757

Query: 924 NAVPVTDPNSS 934
               V   N++
Sbjct: 758 VDTNVARTNAA 768


>gi|50557402|ref|XP_506109.1| YALI0F31735p [Yarrowia lipolytica]
 gi|49651979|emb|CAG78922.1| YALI0F31735p [Yarrowia lipolytica]
          Length = 892

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/812 (34%), Positives = 428/812 (52%), Gaps = 35/812 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG   S    ++   ++  C GL    V    +  +    +Y+G+S  +L+  
Sbjct: 3   KLFVIKRDGRKESVQVDKITARIKRLCYGLDPDHVDPIQITLKIASGIYEGVSTIELDNL 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  +    P+YA + AR  +  L ++      +            LY     R  +
Sbjct: 63  AAETAAYMTTLHPDYAILAARIAVSNLHKQTKKQFSQVV--------YDLYHYVNPRNKK 114

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                       +  +   L   + Y+RDF + Y G + L   Y L +NG+  E PQ   
Sbjct: 115 HSPMVSKELYDTVQANADELNGAILYDRDFTYNYFGFKTLERAYLLRVNGAVAERPQQMI 174

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRV++G+      +   A+E YN +S  +F  ++PTL+N+GT  PQ+SSCFL  + DD +
Sbjct: 175 MRVSVGIHGDNIAR---AIETYNYMSQKYFTHASPTLYNAGTPQPQMSSCFLVNMKDDSI 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+Q
Sbjct: 232 DGIYDTLKTCALISKSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVYNNTARYVDQ 291

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH D+ EF +LRKN G +  R  D+  A WIPDLFM+RV QNA W
Sbjct: 292 GGNKRPGAFAMYLEPWHDDIFEFCELRKNHGKEEIRARDLFLALWIPDLFMERVEQNAEW 351

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL  P+E   L D+YG EF+  YE YE+     E +  R I A  LW  +L    E+G+P
Sbjct: 352 TLMCPNECPGLDDVYGDEFKQLYEQYEK-----EGRGRRTIPAQKLWYHILDCQTESGNP 406

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFANNQ 615
           ++ +KD CN +S Q+++G + SSNLC EI   SS +E AVCNL SI L         N+ 
Sbjct: 407 FMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYSSPDEVAVCNLASIALPTFVTRDDTNSF 466

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ KL    +  VR L+ +ID N + + +AKKSN  HR I LG+ G       L +P+ 
Sbjct: 467 YDFKKLHDIAKVIVRNLNAIIDRNYYPVPEAKKSNMRHRPIALGVQGLADTFMALRLPFE 526

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA ++  +  E I   A+ AS E+A E GAY +F+GS   +G    D   +       
Sbjct: 527 SEEAKKLNIQIFETIYHGAVEASYEMALEDGAYETFQGSPASKGDLQFDLWNVTPSEL-- 584

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD+LK ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 585 --------WEWDDLKAKIMKTGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 636

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F +VN +L+ +L +  LW+E M + +   +GS+ NI  IP ++K ++ T +EI    
Sbjct: 637 AGEFQIVNPWLLKDLVEVGLWNETMKNRIVADNGSVQNIPNIPQEIKDLYKTVWEISQKR 696

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +IE A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+ +A +  + 
Sbjct: 697 IIEMAADRSPFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAAAPIQF 756

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           T+     K           +       +S  +
Sbjct: 757 TIDQEALKTIDSSTAKAMLNKKPYQEINSMAN 788


>gi|94486937|gb|ABF26038.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASTPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|22164662|ref|NP_671575.1| EVM057 [Ectromelia virus]
 gi|22123803|gb|AAM92361.1|AF523264_57 EVM057 [Ectromelia virus]
          Length = 771

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/791 (34%), Positives = 443/791 (56%), Gaps = 32/791 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVVKRNGCRENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+        + A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIESAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L + +G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPNECPGLDNAWGDEFERLYTQYER-----EKRYKNIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNVFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYAGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK ++++ G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWESLKDKIRSHGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW+E + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNEEIKNRIIADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR+++A+S  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAASSPIQFTLDKE 753

Query: 920 DGKLNAVPVTD 930
             K + V  ++
Sbjct: 754 KIKPSMVCDSE 764


>gi|94489757|gb|ABF28844.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/814 (34%), Positives = 441/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA+++G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKKGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|94486532|gb|ABF25635.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486734|gb|ABF25836.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|66275870|ref|YP_232955.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|132611|sp|P12848|RIR1_VACCW RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335666|gb|AAB59806.1| ribonucleotide reductase [Vaccinia virus]
 gi|29692179|gb|AAO89352.1| ribonucleotide reductase large subunit [Vaccinia virus WR]
          Length = 771

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PPVVCDSEICTSC 769


>gi|94484317|gb|ABF23431.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489961|gb|ABF29047.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/787 (35%), Positives = 438/787 (55%), Gaps = 32/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAV 926
             K   V
Sbjct: 754 KIKPLVV 760


>gi|9627579|ref|NP_042102.1| hypothetical protein VARVgp058 [Variola virus]
 gi|417658|sp|P32984|RIR1_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|62335|emb|CAA47558.1| ribonucleotide reductase (large subunit) [Variola virus]
 gi|297239|emb|CAA48999.1| K4L [Variola virus]
 gi|438976|gb|AAA60806.1| homolog of vaccinia virus CDS I4L (ribonucleotide reductase, large
           subunit); putative [Variola major virus]
 gi|544814|gb|AAB29605.1| K4L product [variola virus VAR, India-1967, Peptide, 771 aa]
 gi|94483704|gb|ABF22821.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484521|gb|ABF23634.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484719|gb|ABF23831.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484917|gb|ABF24028.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485115|gb|ABF24225.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485722|gb|ABF24829.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486126|gb|ABF25231.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486329|gb|ABF25433.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487140|gb|ABF26240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487342|gb|ABF26441.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487546|gb|ABF26644.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487951|gb|ABF27047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488554|gb|ABF27647.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488755|gb|ABF27847.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488956|gb|ABF28047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489155|gb|ABF28245.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489355|gb|ABF28444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489557|gb|ABF28645.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94490166|gb|ABF29251.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724101|gb|ABG43227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724305|gb|ABG43430.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724712|gb|ABG43835.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724915|gb|ABG44037.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725119|gb|ABG44240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725324|gb|ABG44444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725527|gb|ABG44646.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725731|gb|ABG44849.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725934|gb|ABG45051.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726341|gb|ABG45456.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726544|gb|ABG45658.1| ribonucleotide reductase large subunit [Variola virus]
 gi|745175|prf||2015436BP K4L gene
          Length = 771

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|37551518|gb|AAQ93170.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK ++KT G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIKTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|156043867|ref|XP_001588490.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980]
 gi|154695324|gb|EDN95062.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980 UF-70]
          Length = 910

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/801 (34%), Positives = 435/801 (54%), Gaps = 33/801 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C  L    + +  +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKERVQFDKITARVSRLCYALDPDHIDAAAITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         +K   H ++ LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSHVIRDLYQYTNPKNGKA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y+RDF ++Y G + L   Y L ++G   E PQ   M
Sbjct: 113 SPMISKETFECVMRHEEELNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E    A+E YNL+S+ +F  ++PTLF++GT   QLSSCFL  +  D + 
Sbjct: 173 RVAVGIHGDDIE---SAIETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  GA+I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKICAMISKNAGGIGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D+YG+EFE  YE+YE+       K  + I A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADVYGEEFEALYESYEKA-----GKGRKTIKAQKLWYSILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E A CNL SI L      N   +D+
Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  VR L+ +IDIN + +++A++SN  HR I +G+ G   A   L +P+ SPE
Sbjct: 465 QKLHEVVQVVVRNLNKIIDINYYPVQEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I   A+++SVE+A+E G Y +++GS   +G    D  G+          
Sbjct: 525 AKHLNIQIFETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD LK+ +K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --SDLWDWDSLKQSIKQHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS+N+++ +P+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSL 938
                +    V    ++    
Sbjct: 755 QEALLVADTNVARERTTKKRT 775


>gi|1143665|emb|CAA53832.1| unnamed protein product [Variola virus]
 gi|5830619|emb|CAB54658.1| L4L protein [Variola minor virus]
          Length = 771

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/787 (35%), Positives = 438/787 (55%), Gaps = 32/787 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLAYAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAV 926
             K   V
Sbjct: 754 KIKPLVV 760


>gi|149248790|ref|XP_001528782.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448736|gb|EDK43124.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 881

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/795 (34%), Positives = 425/795 (53%), Gaps = 35/795 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARVQRLCYGLDPTHVEPVAITQKVIAGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+    P+YA + AR  +  L ++                 + LY          
Sbjct: 61  AETAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSAVS--------KILYEYINPETKLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 113 SPMISKETYDIIQEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++  +    +E YNL+S  +F   +P LFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAIGIHGRDIPRV---IETYNLMSQRYFTHGSPCLFNAGTPKPQMSSCFLVAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EF+++RKN G +  R  D+  A WIPDLFMKRV QN  WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFEFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D YG+EFE  Y  Y       E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADCYGEEFEELYNKYVA-----EGRGRQTIKAQKLWYSILECQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616
           + +KD CN +S Q+++G++ SSNLC EI   SS EE AVCNL SI L +    +     +
Sbjct: 405 MLYKDACNAKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFIEQDENKIWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   R L+ VID N + + +A+KSN  HR I LG+ G   A  +L I + S
Sbjct: 465 NFEKLHDVTKVVTRNLNRVIDRNYYPVPEAEKSNMRHRPIALGVQGLADAFMVLRIAFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E+  +  E I   A+ AS+ELAQE GAY +++GS   QG+   D            
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAQEEGAYETYQGSPASQGLLQFDLWNRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WDELK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDELKAKLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM S +  ++GSI  +  IPD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ AS R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A++  + T
Sbjct: 695 IDMASDRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754

Query: 916 LKGVDGKLNAVPVTD 930
           +     +     V D
Sbjct: 755 IDKKIAEQAGNTVAD 769


>gi|316969123|gb|EFV53282.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 833

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/774 (35%), Positives = 429/774 (55%), Gaps = 33/774 (4%)

Query: 152 GTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           G   + +  ++   +++ C GL  + +   ++  +    +Y G++  +L+      S T+
Sbjct: 27  GRREAVHFDKITSRIKKLCYGLNMEHIEPILISQKVIAGLYQGVTTVELDNLAAEISATM 86

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             K P+YA + AR  +  L +E         +K     +  LY        +        
Sbjct: 87  TTKHPDYATLAARIAVSNLHKET--------KKVFSDVIDDLYQWINPNTNKHSPMISPK 138

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+G+ 
Sbjct: 139 VHQIIQANSQRLNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAIGIH 198

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQ 388
               +    A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D + GI+  L+
Sbjct: 199 ---EDDIDAAIETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYDTLK 255

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGA 447
           E A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+QG  KR GA
Sbjct: 256 ECAIISKSAGGIGLNVHCIRASGTYIAGTNGYSNGLLPMLRVFNNTARYVDQGGNKRPGA 315

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YLE WH D+ +FLD +KNTG +  R  D+  A WIPDLFMKR+  +  W+L  P E 
Sbjct: 316 FAVYLEPWHADIFDFLDAKKNTGVEENRARDLFYALWIPDLFMKRIEADGDWSLMCPHEC 375

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L DL+G EFE  YE YE Q      K  R+I A  LW  ++    ETG P++ +KD C
Sbjct: 376 PGLADLWGDEFEKLYEKYEAQ-----GKHKRRIKAQQLWYAIIESQIETGTPFMVYKDAC 430

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTI 625
           N +S QQ++G +  SNLCTEI   SS +ET+VCNL SI L         +FD+ KLA   
Sbjct: 431 NRKSNQQNLGTIKCSNLCTEIVQYSSPDETSVCNLASIALNKFVNVAKREFDFAKLAEVT 490

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           +     L+ +ID N + +  A+KSN  HR IG+G+ G   A  L+  P+ S EA  +  +
Sbjct: 491 KVVTVNLNKIIDRNYYPVAVAEKSNKRHRPIGIGVQGLADAFILMRYPFESEEARLLNKK 550

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I + A+ +S +LA++ G Y +++GS   +G+   D             +  T    
Sbjct: 551 IFETIYYAALESSCDLAKQFGPYETYQGSPASKGILQYDMWN----------VQPTDLWD 600

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ LK R++  G+RNS  +A  PTA+ A I G ++S++    N+Y +  +SG+F +VN  
Sbjct: 601 WESLKCRIEKYGLRNSLLLAPMPTASTAQILGNNESVEAYTSNVYTRRVLSGEFQIVNHH 660

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ +L +  LWDE++ +++  + GSI +IE IP ++++++ T +EI    +I+ A+ R  
Sbjct: 661 LMKDLVELGLWDESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGA 720

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + T+  
Sbjct: 721 FIDQSQSLNIHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTVDK 774


>gi|94483909|gb|ABF23025.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484112|gb|ABF23227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485317|gb|ABF24426.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485520|gb|ABF24628.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487747|gb|ABF26844.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488154|gb|ABF27249.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488354|gb|ABF27448.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726138|gb|ABG45254.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKQVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|156083304|ref|XP_001609136.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis
           T2Bo]
 gi|154796386|gb|EDO05568.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis]
          Length = 838

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/832 (35%), Positives = 432/832 (51%), Gaps = 42/832 (5%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKN 188
            A   + S       + ++   G     +  R+   + +   GL   V +  V       
Sbjct: 13  DAFEEAHSTELAPKAMFVINRKGESEEVHFDRILERIRKLSFGLHSLVDAPRVTQSVING 72

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           MY G+  S L+     +   +    P+Y+K+ AR +++ L +  L               
Sbjct: 73  MYSGIRTSQLDELAAQTCAYMAATHPDYSKLAARIVVDNLHKNTLDNYADVITALFK--- 129

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305
              Y   +         A L+ E + DF   ++  +  ++ Y RDF ++Y GL+ L   Y
Sbjct: 130 ---YKYIYDSN------ASLISEEVYDFIMANIDRINAEIDYSRDFQYDYFGLKTLERSY 180

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L IN   +E PQ   MRV+ G+   + E+    ++ Y+L+S  +F  +TPTLF SGT  
Sbjct: 181 LLRINDKIVERPQHMLMRVSAGIHTGDIERT---IQTYHLMSQKYFTHATPTLFFSGTPR 237

Query: 366 PQLSSCFLTTVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSCFL  + DD   GIF  L + A ++K +GG+G     +R  GA+I GTNGKS G+
Sbjct: 238 PQMSSCFLLDMKDDSLAGIFETLTQCAFISKCAGGIGLACHKIRASGAYIRGTNGKSNGL 297

Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           +P L++ N TA  V+QGG KRKG+   YLE WH D+ +FLDLRKN G +  R  D+  A 
Sbjct: 298 VPMLRIFNSTARYVDQGGGKRKGSFAIYLEPWHADIMDFLDLRKNHGAEEARARDLFYAL 357

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPDLFMKRV  N  WTL  PDE   L+D++G EFE  Y  YE      E    + I A 
Sbjct: 358 WIPDLFMKRVESNGDWTLMCPDECRGLYDVWGDEFEALYTKYEM-----EGLGRKTIPAQ 412

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  +L    ETG+P++ +KD CN +S QQ++G + SSNLC EI   +S EE AVCNL 
Sbjct: 413 TLWFAILQSQIETGNPFMLYKDACNAKSNQQNLGTIKSSNLCCEIVQYTSPEEVAVCNLA 472

Query: 604 SINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           SI L  +    N  +D+ KL    R     L+ VID N + + +AK SNH HR IG+G+ 
Sbjct: 473 SIALPMYVDKENKTYDFKKLYDVARVITYNLNKVIDRNYYPVPEAKVSNHRHRPIGVGVQ 532

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G      L+  P+ S EA E+     E I +  +  S+ LA++ G Y S+ GS   QG  
Sbjct: 533 GLADTFMLMRYPFESEEAKELNRRIFETIYYGCLDESISLAEKYGTYESYPGSPASQGKL 592

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D  G   + +            WD LK+R+   G+RNS  +A  PTA+ + I G ++S
Sbjct: 593 QFDLWGATVDNK---------LWDWDGLKQRMAKHGLRNSLFLAPMPTASTSQILGNNES 643

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
            +P   N+Y +  +SG+F VVN  L+ +L    LWD+AM   L  ++GS+ +IE IP  +
Sbjct: 644 FEPYTSNIYYRRVLSGEFFVVNPHLLRDLVDLGLWDDAMKEKLIAYNGSLRHIEGIPQHI 703

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900
           K ++ T +EI    +I+ A+ R  +IDQ+QSLN+YLD+P+  KL  ++   W  GLKT T
Sbjct: 704 KDLYKTVWEIKQKSIIDMAADRGIFIDQSQSLNIYLDQPTFGKLTSMHFYGWKKGLKTGT 763

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST----HSLGIPSSCTSDT 948
           YYLR+++AT   K T+     ++         +       +       T D 
Sbjct: 764 YYLRTQAATDAIKFTVDTSVSQMAKATSQQQRAKATDGVSTTEGSPVSTEDP 815


>gi|113195253|ref|YP_717383.1| ribonucleotide reductase large subunit [Taterapox virus]
 gi|90660529|gb|ABD97642.1| ribonucleotide reductase large subunit [Taterapox virus]
          Length = 771

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 FPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|30519447|emb|CAD90622.1| L4L protein [Cowpox virus]
          Length = 771

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/814 (34%), Positives = 441/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNMDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+        + A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIESAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L D++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDDVWGDEFERLYTQYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW+E + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|315056831|ref|XP_003177790.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
 gi|311339636|gb|EFQ98838.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
          Length = 870

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/801 (34%), Positives = 426/801 (53%), Gaps = 33/801 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V +  +       +Y G++  +L+     ++  
Sbjct: 4   DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++                +  LY     +          
Sbjct: 64  MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRPAPMISE 115

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
               ++      L + + Y+RDF ++Y G + L   Y L  NG   E PQ   MRVA+G+
Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
                E  ++ +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + GI+  L
Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E
Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG+EFE  YE YE+     + +    I A  LW  +L    ETG+P++ +KD 
Sbjct: 353 APGLADVYGEEFEALYEKYEK-----DGRGRSTIKAQKLWYAILEAQTETGNPFMLYKDS 407

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624
           CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L       +  +D+ KL   
Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPEA  +  
Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNI 527

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E +   A++AS ELA+  G YSS++GS   QG+   D   +            T   
Sbjct: 528 QIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 578 DWDSLKSDISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GSI N+  IP D+K ++ T +EI    +++ A+ R 
Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNVPNIPADIKALYKTVWEISQRTIVQMAADRG 697

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+     K+
Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKI 757

Query: 924 NAVPVTDPNSSTHSLGIPSSC 944
               V   N+S       +  
Sbjct: 758 VDTNVARTNASARKRVGTAVS 778


>gi|132610|sp|P20503|RIR1_VACCC RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|56404829|sp|Q76RD8|RIR1_VACCA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335407|gb|AAA48059.1| putative I4L [Vaccinia virus Copenhagen]
 gi|2772697|gb|AAB96436.1| ribonucleotide reductase, large subunit [Vaccinia virus]
 gi|38348940|gb|AAR17916.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|44971425|gb|AAS49775.1| RPXV062 [Rabbitpox virus]
 gi|47088393|gb|AAT10463.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|56713441|gb|AAW23481.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|56713725|gb|AAW23763.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|88900691|gb|ABD57603.1| VACV069 [Vaccinia virus]
 gi|90819733|gb|ABD98543.1| VACV-DUKE-081 [Vaccinia virus]
 gi|160857955|emb|CAM58243.1| ribonucleotide reductase large subunit [Vaccinia virus Ankara]
 gi|167412562|gb|ABZ79996.1| ribonucleotide reductase large subunit [Vaccinia virus GLV-1h68]
          Length = 771

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|19718013|gb|AAG37538.1| CMP70L [Camelpox virus CMS]
          Length = 771

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/814 (33%), Positives = 439/814 (53%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAIIAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G      LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADTFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|109724507|gb|ABG43631.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHFDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDEEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|88854118|gb|ABD52536.1| ribonucleotide reductase large subunit M1 [Vaccinia virus]
          Length = 771

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 441/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           ++   W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SNLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|124809244|ref|XP_001348526.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
 gi|23497421|gb|AAN36965.1|AE014821_52 ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
          Length = 847

 Score =  685 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/841 (34%), Positives = 437/841 (51%), Gaps = 47/841 (5%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
                      + ++   G     +  ++   ++    GL + V    V       MY G
Sbjct: 31  KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   +L+     +   +    P+++ + AR   + L +     V +  +    ++     
Sbjct: 91  IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVRGR 150

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           P      I + V   +L           L  ++ Y RDF ++Y G + L   Y L IN  
Sbjct: 151 P---ASLISKEVYDFILLHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNK 201

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE PQ   MRV++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCF
Sbjct: 202 IIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L ++  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V 
Sbjct: 259 LLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFM
Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV +N  WTL  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L
Sbjct: 379 KRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAIL 433

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L   
Sbjct: 434 QSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493

Query: 611 F--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +F++ KL    +   R LD +I+ N + +++AK SN  HR IG+G+ G      
Sbjct: 494 VDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFM 553

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           LL  PY S  A E+     E + + A+  SVELA   G Y S++GS   QG+   D    
Sbjct: 554 LLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNA 613

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             + +            WDELK +++  G+RNS  +A  PTA+ + I G ++S +P   N
Sbjct: 614 KVDNK---------YWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDLK+++ T 
Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTV 724

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++
Sbjct: 725 WEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784

Query: 908 ATSVEKSTLKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEV 952
           AT   K T+     K                V+    ST S    + C     +D +C +
Sbjct: 785 ATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLM 844

Query: 953 C 953
           C
Sbjct: 845 C 845


>gi|94485925|gb|ABF25031.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  685 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A A+W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARAVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL SI L     + QFD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW+  + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNNEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|62288418|gb|AAX78464.1| unknown [synthetic construct]
          Length = 797

 Score =  685 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/824 (33%), Positives = 442/824 (53%), Gaps = 50/824 (6%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192
              D     ++ ++  +G   +    ++   + + C GL    +    +  +  + +Y+G
Sbjct: 17  IDDDDKHMLEMFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNG 76

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T     + T   + P+YA + AR  +  L +E         +K     M+ L+
Sbjct: 77  VTTVELDTLAAEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLF 128

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                +  +       +   +++     L + + YERDF++ Y G + L   Y L IN  
Sbjct: 129 NYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNK 188

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E PQ   MRVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCF
Sbjct: 189 IVERPQHMLMRVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCF 245

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L  +  D + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V 
Sbjct: 246 LLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVY 305

Query: 432 NDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           N+TA  ++QG  KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFM
Sbjct: 306 NNTARYIDQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFM 365

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV  +  W+L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++
Sbjct: 366 KRVKDDGEWSLMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAII 420

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L   
Sbjct: 421 ESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMF 480

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             + +FD+ KL   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL
Sbjct: 481 VIDGRFDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILL 540

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           + P+ S EA ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++ 
Sbjct: 541 NYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP 600

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                     +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y
Sbjct: 601 ----------SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 650

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +E
Sbjct: 651 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 709

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I+ A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A+
Sbjct: 710 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 769

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +  + TL     K                  P        C  C
Sbjct: 770 APIQFTLDKDKIK------------------PPVVCDSEICTSC 795


>gi|18640305|ref|NP_570461.1| CMLV071 [Camelpox virus]
 gi|18482981|gb|AAL73778.1|AF438165_68 ribonucleotide reductase large subunit [Camelpox virus M-96]
          Length = 771

 Score =  685 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAIIAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|302498356|ref|XP_003011176.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
 gi|291174724|gb|EFE30536.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
          Length = 870

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/791 (34%), Positives = 426/791 (53%), Gaps = 33/791 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V +  +       +Y G++  +L+     ++  
Sbjct: 4   DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++                ++ LY     +          
Sbjct: 64  MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IEDLYHYVNPKNGRPAPMISE 115

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
               ++      L + + Y+RDF ++Y G + L   Y L  NG   E PQ   MRVA+G+
Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
                E  ++ +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + GI+  L
Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E
Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG+EFE  YE YE+     E +    I A  LW  +L    ETG+P++ +KD 
Sbjct: 353 APGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDS 407

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624
           CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L       +  +D+ KL   
Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPEA  +  
Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNT 527

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E +   A++AS ELA+  G YSS++GS   QG+   D   +            T   
Sbjct: 528 QIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 578 DWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R 
Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 697

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+     K+
Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 757

Query: 924 NAVPVTDPNSS 934
               V   N++
Sbjct: 758 VDTNVARTNAA 768


>gi|51342225|gb|AAU01269.1| MPXV-WRAIR059 [Monkeypox virus]
 gi|58220529|gb|AAW67817.1| MPXV-SL-059 [Monkeypox virus]
 gi|59858865|gb|AAX09160.1| MPXV-COP-059 [Monkeypox virus]
 gi|68448741|gb|AAY96864.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449343|gb|AAY97463.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449543|gb|AAY97662.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG+D  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKCIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PQVVCDSEICTSC 769


>gi|68448942|gb|AAY97064.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449144|gb|AAY97265.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|300872688|gb|ADK39090.1| ribonucleotide reductase protein large subunit [Monkeypox virus]
          Length = 771

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 441/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PQVVCDSEICTSC 769


>gi|221059988|ref|XP_002260639.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           knowlesi strain H]
 gi|193810713|emb|CAQ42611.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium knowlesi strain H]
          Length = 848

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/842 (33%), Positives = 442/842 (52%), Gaps = 48/842 (5%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
                      + ++   G     +  ++   ++    GL + V    V       MY G
Sbjct: 31  KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   +L+     +   +    P+++ + AR   + L +     + +  +    ++     
Sbjct: 91  IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAEVAEALYMYKDVRGR 150

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           P      I + V   ++           L  ++ Y RDF ++Y G + L   Y L ING 
Sbjct: 151 P---ASLISKEVYDFMIQHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINGK 201

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE PQ   MRV++G+ + +    ++A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCF
Sbjct: 202 IIERPQHLLMRVSIGIHIGD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L  +  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V 
Sbjct: 259 LLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFM
Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV +N  WTL  P+E   L + +G EFE  Y  YE      E    + + A  LW  +L
Sbjct: 379 KRVKENQNWTLMCPNECPGLSESWGAEFEKLYLKYEE-----EGMGKKTVLAQDLWFAIL 433

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L   
Sbjct: 434 QSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493

Query: 611 FA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +F++ KL    +   R LD +I+ N + +++A++SN  HR IG+G+ G      
Sbjct: 494 VDVDKREFNFKKLYEITKIITRNLDQIIERNYYPVQEAERSNKRHRPIGIGVQGLADTFM 553

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           LL  PY S  A E+     E + + A+  S+ELAQ  G Y +++GS   QG+   D   +
Sbjct: 554 LLRYPYESDSAKELNKRIFETMYYAALEMSMELAQIYGPYETYQGSPASQGILQFDMWNV 613

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             + +            WD+LK+++K  G+RNS  +A  PTA+ + I G ++S +P   N
Sbjct: 614 KVDNK---------YWDWDKLKEKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP+DLK+++ T 
Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDLKELYKTV 724

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++
Sbjct: 725 WEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784

Query: 908 ATSVEKSTLKGVDGK----------------LNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           AT   K T+     K                ++   ++  ++ T ++  P     D +C 
Sbjct: 785 ATDAIKFTVDTQVAKNAAKMKNEEGVAITREVSRETISTESTVTQNVVCPLRRNKDDQCL 844

Query: 952 VC 953
           +C
Sbjct: 845 MC 846


>gi|6969720|gb|AAF33932.1| TI4L [Vaccinia virus Tian Tan]
          Length = 771

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 439/814 (53%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGFRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|323452424|gb|EGB08298.1| hypothetical protein AURANDRAFT_37557 [Aureococcus anophagefferens]
          Length = 793

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/823 (33%), Positives = 429/823 (52%), Gaps = 42/823 (5%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESD 197
                ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +
Sbjct: 2   SADDDMQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHE 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+     ++  +  + P+++ + AR  +  L +    T     +K        L+     
Sbjct: 62  LDELAAQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK--------LHKHMHP 113

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           +  +          + +      +   + YERDF ++Y G + L   Y + ++G+  E P
Sbjct: 114 KTKKPAALISDETYATVQKHKDAINAAIVYERDFEYDYFGFKTLERSYLMRLDGAIAERP 173

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q   MRVA+G+   +      A+E Y ++S   F  +TPTLFN+GT  PQLSSCFL  + 
Sbjct: 174 QHMIMRVALGIHGDD---LAAALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMK 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA 
Sbjct: 231 EDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTAR 290

Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QGG +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  
Sbjct: 291 YVDQGGGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEA 350

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    E
Sbjct: 351 NGFWSLMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWFAILDSQVE 405

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--- 612
           TG P++ +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL  H     
Sbjct: 406 TGTPYMLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAG 465

Query: 613 -NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD+ KL  T     + L+ V+D+N + +E+AK SN  HR +G+G+ G   AL  L 
Sbjct: 466 DAATFDFAKLKRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLR 525

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            PY S +A  I  +  E I F A+ AS++LAQE G Y S+ GS   QG+F  D       
Sbjct: 526 HPYESDDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWN---- 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +  + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N+Y 
Sbjct: 582 ------VKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYT 635

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  ++G+F VVN +L+ +L    LW   + + +    GS+  +  IPDDLK ++ T +EI
Sbjct: 636 RRVLAGEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEI 695

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R    
Sbjct: 696 KQKCVLDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKAD 755

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               T+       +        ++            + EC  C
Sbjct: 756 AIAFTVDQAMAAKSRGGAALELANGQEAE-------EHECLSC 791


>gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max]
          Length = 809

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/834 (34%), Positives = 448/834 (53%), Gaps = 52/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +   +H  +          I +
Sbjct: 61  AETAAAMTANHPDYASLAARIAVSNLHKNTKKSFSETIKVMYYHFNER--SAMKAPLIAD 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   ++       +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 119 DVYEIII------KNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +    AV  Y+++S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIDSAVRTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+ DLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMERVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G+EFE  Y  YER     E K  + + A  LW ++L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGEEFEKLYTQYER-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L  +          
Sbjct: 405 MLFKDTCNKKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKGVPMES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKL          L+ +ID+N + ++ A++SN  HR IG+G+
Sbjct: 465 HPSKLVGSRGSKNRYFDFDKLGEVTAIVATNLNKIIDVNYYPVDTARRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL + + SPEA ++  +  E I +HA+  S ELA + G Y ++ GS   +G+
Sbjct: 525 QGLADTFILLGVAFDSPEAQQLNKDIFETIYYHALKTSSELAAKEGPYETYSGSPISKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G++           +SR  WD L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWGVMP----------SSRWDWDALREMIAKTGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW   + +++ Y DGS+  I  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTIKNNIIYEDGSVQKIPEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 695 LKIIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+         +   + ++ T    +  S T+  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDTSMLHEKPMAEEEDDN-TKMAQMVCSLTNREECLAC 807


>gi|224096482|ref|XP_002310626.1| predicted protein [Populus trichocarpa]
 gi|222853529|gb|EEE91076.1| predicted protein [Populus trichocarpa]
          Length = 812

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/836 (34%), Positives = 444/836 (53%), Gaps = 53/836 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGKQEAVHFDKITARLKKLSYGLSTDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +           K+    ++ +Y  +  +   +
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------HKSFSETIKIMYNHFNEKSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 APLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIDSALKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +GKEFE  Y  YER     + K  + + A  LW ++L    ETG P+
Sbjct: 350 LFCPSEAPGLADCWGKEFEELYTRYER-----DGKAKKVVQAQNLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------ 614
           + FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPIES 464

Query: 615 --------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                          FD++KLA         L+ +ID+N + +E A++SN  HR IG+G+
Sbjct: 465 HPSKVVGSRGSNRRYFDFEKLAEVTGVVTVNLNKIIDVNYYPVETARRSNFRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL + + SPEA ++  +  E I +HA+ AS E+A   G Y ++ GS   +G+
Sbjct: 525 QGLADAFMLLGMAFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYVGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+            +S   WD L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWGVTP----------SSLWNWDALREMISKNGVRNSLLLAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y DGS+  I  I DD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQKIPEISDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 695 LKCIYKTVWEIKQKTLVDMAVDRGCFIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRS++A    K T+       K   +        T    +  S T+  EC  C
Sbjct: 755 MYYLRSQAAADAIKFTVDTSVFKEKKPELDDDAAADDTKIAQMVCSLTNREECMAC 810


>gi|312212194|emb|CBX92278.1| similar to ribonucleoside-diphosphate reductase subunit large
           [Leptosphaeria maculans]
          Length = 903

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/802 (33%), Positives = 426/802 (53%), Gaps = 33/802 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++   L+   
Sbjct: 1   MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                   LY     +  + 
Sbjct: 61  AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVV--------HDLYSYVNPKNGKS 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF +++ G + L   Y L ING   E PQ   M
Sbjct: 113 QPMISDKVYKIVMAHADELNSAVVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ EK   A+E Y+ +S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVAVGIHGEDIEK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV  FLDLRKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D+YG EFE  YE+YE+     + K    + A  LW  +L    ETG+P+
Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEK-----KGKGRETVRAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   ++ +E AVCNL S+ L     +   +FD+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPSFVDYKRGEFDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R L+ +I++N + +E+A++SN  HR IG+G+ G   A   L +P+ SPE
Sbjct: 465 KKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A+++S ++A+E G Y ++ GS   QG+   D   +          
Sbjct: 525 AKKLNIQIFETIYHAALTSSCDIAKELGPYETYAGSPVSQGILQYDMWNVTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W  LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWAALKEKIAQYGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW E M + +    GSI  I  IP++ K ++ T +EI    +I+
Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRTIIQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++ EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939
               ++    V           
Sbjct: 755 QEALQVADTNVARALPKVRKQP 776


>gi|302805775|ref|XP_002984638.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
 gi|300147620|gb|EFJ14283.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
          Length = 803

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/831 (34%), Positives = 444/831 (53%), Gaps = 52/831 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++    L        IV  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGKQEAVHFDKITARLKKLSYSLNPDYCDPVIVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++    P+YA + AR ++  L ++   +  +  ++   H  +    +     I  
Sbjct: 61  AETAASMTTSHPDYAILAARIVVSNLHKKTKKSFSETVKEMYSHVDERSGLK--APLIAN 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   ++       +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 119 DVYDIIM------KNAAKLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGRVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+     E  + A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVSVGIH---KEDIEAAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R   ++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRATNSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH DV ++LDL+KN G +  R  D+    WIPDLFM+RV  N+ W+
Sbjct: 290 GGKRKGAFAIYLEPWHADVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G+EFE  Y  YER     E +  R +SA  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADCWGEEFESLYTRYER-----EGRAKRSLSAQKLWFAILESQMETGNPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---------- 610
           + FKD CN +S QQ++G +  SNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSPSETAVCNLASIALPRFVREQGINSET 464

Query: 611 -------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                    N  FD+ KLA         L+ +IDIN + ++ AK+SN  HR IG+G+ G 
Sbjct: 465 KLVGSKGCKNRVFDFHKLAEVTTVVTENLNKIIDINYYPVDTAKRSNLRHRPIGIGVQGL 524

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
             A  LL +P+ S EA ++  +  E I +HA+  S  LA+  G Y ++ GS   +GVF  
Sbjct: 525 ADAFILLGLPFDSEEARDLNKDIFETIYYHAMKTSSILAELYGVYETYPGSPVSKGVFQP 584

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D   ++           + R  W  LK+ V   G+RNS  +A  PTA+ + I G ++  +
Sbjct: 585 DMWNVIP----------SGRWDWAALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFE 634

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   N+Y +  +SG+F VVN  L+N+L    +W   + + +  ++GSI +IE IPDDLK+
Sbjct: 635 PYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQ 694

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
           I+ T +EI    +++ A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT  YY
Sbjct: 695 IYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYY 754

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           LRS++A    K T+     K      T          +  S  +   C  C
Sbjct: 755 LRSQAAADAIKFTVDTASLK----SPTKTTDEELLAQMVCSLENRENCLAC 801


>gi|327301679|ref|XP_003235532.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
 gi|326462884|gb|EGD88337.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
          Length = 870

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/791 (34%), Positives = 425/791 (53%), Gaps = 33/791 (4%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   V   C GL    V +  +       +Y G++  +L+     ++  
Sbjct: 4   DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P+YA + AR  +  L ++                +  LY     +          
Sbjct: 64  MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRPAPMISE 115

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
               ++      L + + Y+RDF ++Y G + L   Y L  NG   E PQ   MRVA+G+
Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387
                E  ++ +E YNL+S  +F  ++PTLFN+GT  PQ++SCFL  +  D + GI+  L
Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WTLF P+E
Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG+EFE  YE YE+     E +    I A  LW  +L    ETG+P++ +KD 
Sbjct: 353 APGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDS 407

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624
           CN +S Q+++G + SSNLCTEI   ++ +E AVCNL SI L       +  +D+ KL   
Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            +  VR L+ +ID N + +E+A++SN  HR I +G+ G   A   L +P+ SPEA  +  
Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNT 527

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E +   A++AS ELA+  G YSS++GS   QG+   D   +            T   
Sbjct: 528 QIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            WD LK  +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN 
Sbjct: 578 DWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +EI    +++ A+ R 
Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNISNIPADIKALYKTVWEISQRTIVQMAADRG 697

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923
            +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A++  + T+     K+
Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 757

Query: 924 NAVPVTDPNSS 934
               V   N++
Sbjct: 758 VDTNVARTNAA 768


>gi|156838441|ref|XP_001642926.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113506|gb|EDO15068.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 883

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/816 (34%), Positives = 428/816 (52%), Gaps = 37/816 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +   C GL    +    V       +Y+G++  +L+   
Sbjct: 1   MYVIKRDGREEPVRFDKITARISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTYELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++          K     +  L+        + 
Sbjct: 61  AETAAYMTTVHPDYAVLAARLAVSNLHKQT--------TKVFSKVIDELHHYVNPENNKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +  +   L + + Y+RDF + Y G + L   Y L + G   E PQ   M
Sbjct: 113 APLISKDVYDTVMANKDELNSAIVYDRDFNYNYFGFKTLERSYLLRMKGKVAERPQHMVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +    K A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAIGIHGND---IKAAIESYNLMSQRYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA+  YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +NA WT
Sbjct: 290 GNKRPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENADWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L ++YG+EFE  Y  Y       E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLDEVYGEEFEALYNRYVE-----EGRGKKTIKAQKLWYSILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL------AHFANN 614
           + +KD CN++S Q+++G + SSNLC EI   S+ +ETAVCNL SI L            +
Sbjct: 405 MLYKDACNLKSNQRNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEKSKDEKQS 464

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ KL    +   R L+ VID N + +++AK SN  HR I LG+ G   A  LL IP+
Sbjct: 465 FYNFKKLHDIAKVVTRNLNRVIDRNYYPVQEAKNSNFRHRPIALGVQGLADAFMLLRIPF 524

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA E+     E +   A+ AS ELAQE GAY +FKGS   +G+   D          
Sbjct: 525 ESKEAKELNIHIFETLYHGALEASCELAQEEGAYQTFKGSPASEGILQFDMWNRKP---- 580

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 T    WD LK  +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 581 ------TDLWDWDTLKSNIIAHGIRNSLVMAPMPTASTSQILGYNECFEPFTSNMYQRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN +L+ +L    +W+E+M   L   +GSI N+  +P +LK ++ T +EI   
Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWNESMKQHLITDNGSIQNLPNVPQELKDLYKTVWEISQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ ++ R  +IDQ+ S+N+++  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 695 TIIDMSADRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            T+     +     V D  +      +P       +
Sbjct: 755 FTIDKKVAEKAGESVADIANLNRPHYVPRKLNISED 790


>gi|323454028|gb|EGB09899.1| hypothetical protein AURANDRAFT_24558 [Aureococcus anophagefferens]
          Length = 787

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/818 (33%), Positives = 429/818 (52%), Gaps = 42/818 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +  + P+++ + AR  +  L +    T     +K        L+     +  + 
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK--------LHKHMHPKTKKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    + +      +   + Y+RDF ++Y G + L   Y + ++G+  E PQ   M
Sbjct: 113 AALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   +      A E Y ++S   F  +TPTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVALGIHGDD---LAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N  W+
Sbjct: 290 GGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    ETG P+
Sbjct: 350 LMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWFAILDSQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQF 616
           + +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL  H         F
Sbjct: 405 MLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATF 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL  T     + L+ V+D+N + +E+AK SN  HR +G+G+ G   AL  L  PY S
Sbjct: 465 DFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYES 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A  I  +  E I F A+ AS++LAQE G Y S+ GS   QG+F  D            
Sbjct: 525 DDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWN--------- 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +  + R  W+ L+ R+   G RNS  +A  PTA+ A I G ++S +P   N++ +  ++
Sbjct: 576 -VKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMFTRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F VVN +L+ +L    LW   + + +    GS+  +  IPDDLK ++ T +EI    +
Sbjct: 635 GEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCV 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ ++ R  +I Q+QSLNL++ +P+  KL  ++  AW  GLKT  YYLR+R        T
Sbjct: 695 LDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFT 754

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +        ++   L        + EC  C
Sbjct: 755 VDQAMAAKSRGGAALEPANGQELE-------EHECLSC 785


>gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
 gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
          Length = 815

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/839 (34%), Positives = 446/839 (53%), Gaps = 56/839 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYMHFNERSGLM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 APLVAEDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E  + A+  Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KEDIESAIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G+EF+  Y+ YE Q      K  + + A  LW  +L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGEEFDNLYKKYESQ-----GKAKKVVPAQTLWFDILKAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEFTSPNETAVCNLASIALPRFVREKGVPLES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD++KLA    T    L+ +IDIN + +E AK+SN  HR IG+G+
Sbjct: 465 HPSKLVGSSDSKNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ SPEA ++  +  E I +H++ AS ELA + G Y +++GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYEGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W  L++ +  +G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWDVVPSNR----------WNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++++ +  KL  ++  AW  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV-----PVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+     K N         T+ +       +  S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTTLLKENGNVVSNGKPTEEDVEAKMAQMVCSLNNREECMAC 813


>gi|90660311|gb|ABD97425.1| ribonucleotide reductase large subunit [Cowpox virus]
          Length = 771

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L D++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDDVWGDEFERLYTQYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PLVVCDSEICTSC 769


>gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
 gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti]
 gi|108873131|gb|EAT37356.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
          Length = 844

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/809 (35%), Positives = 429/809 (53%), Gaps = 32/809 (3%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200
            K+ +   DG     +  ++   +++ C GL    V    +  +    +Y G++  +L+ 
Sbjct: 6   NKMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYSGVTTQELDN 65

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++ T+  +  +YA + AR  +  L +E                M  LY        
Sbjct: 66  LAAETAATMTTEHADYAILAARLAVSNLHKETKKHFSDV--------MHDLYMMENEHLK 117

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +        H  ++      L + + Y+RDF + Y G + L   Y L I G  +E PQ  
Sbjct: 118 KRTPMISEFHYKVIMDHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHM 177

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
            MRVA+G+     E    A+E YNLLS  +F  ++PT+F + T  PQLSSCFL T+ DD 
Sbjct: 178 LMRVAIGIHG---EDIDAAIETYNLLSERYFTHASPTMFAAATCRPQLSSCFLLTMSDDS 234

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G+IP L+V N+TA  V+
Sbjct: 235 IEGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYIAGTNGISNGLIPMLRVYNNTAKYVD 294

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA   YLE WH DV EFLDL+KNTG +  R  DM  A WIPDLFMKRV  N  
Sbjct: 295 QGGNKRPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANED 354

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L  P E   L D +G+EFE  Y +YE      E +  RK+ A  LW  ++    ETG 
Sbjct: 355 WCLMCPHECPGLSDTWGEEFEKLYTSYEA-----EGRYIRKVKAQDLWFAIIESQVETGV 409

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FD 617
           P++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI L      ++ +D
Sbjct: 410 PYMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDKTYD 469

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    + A + L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY S 
Sbjct: 470 FQKLKEVAKIATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSE 529

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA++ G Y ++ G    +GV   D             
Sbjct: 530 EAQKLNQQIFETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYDMWNKEP------- 582

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W  LK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 583 ---TDMWDWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSG 639

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN  L+ +L + DLWD+ M + +  ++GSI NIE IP  ++ ++ T +EI     I
Sbjct: 640 EFQIVNHHLLKDLTELDLWDDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCI 699

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T+
Sbjct: 700 KMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTV 759

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                  +         +     +  + +
Sbjct: 760 DKTRLNQSNRINNSDTVNGSPSKMNGATS 788


>gi|168022742|ref|XP_001763898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684903|gb|EDQ71302.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 811

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/835 (34%), Positives = 446/835 (53%), Gaps = 52/835 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGRQEAVHFDKITARLKKLSYGLNPEHCEPVLVAQKVCMGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +   +H  +    +     I +
Sbjct: 61  AETAAAMTANHPDYAILAARIAVSNLHKNTKKSFSETVKDMYYHVNERSGLK--SPLIAD 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   ++       +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 119 DVYDIII------KNAPRLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+     E  +  ++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVSVGIH---KENIEAVLKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKNDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRTTGSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ E+LDLRKN G +  R  D+    WIPDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEWLDLRKNHGKEESRARDLFYGLWIPDLFMQRVQNNGTWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G++FE  Y  YE      E +  + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADCWGEQFETLYARYE-----LEGRAKKVVQAQKLWFAVLEAQIETGNPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---------- 610
           I FKD CN +S QQ++G + SSNLCTEI   +S +ETAVCNL S+ L             
Sbjct: 405 ILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASLALPRFVREKGVSLES 464

Query: 611 ----------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD++KL        R L+ +ID+N + +E A++SN  HR IGLG+
Sbjct: 465 HPTKIIGSNGHENRFFDFNKLGEITSLVTRNLNRIIDVNYYPVETARRSNMRHRPIGLGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL +P+ S EA ++  +  E I +HA+  S ELA E G Y ++ GS   +G 
Sbjct: 525 QGLADAFILLGMPFDSEEAQQLNRDIFETIYYHALKTSCELAAEEGVYETYAGSPISKGA 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D             +  ++R  WD L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWN----------VKPSTRWDWDSLRQMILNNGVRNSLLLAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+N+L    LW   + + + YH+GSI  I+ IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTNMGLWTHDLKNQVIYHNGSIQQIDVIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LKKI+ T +EI    +++ A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GLKT 
Sbjct: 695 LKKIYRTVWEIKQRSIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLN-AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+     K      V   N       +  S  +  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDQSSIKQETPAAVVSNNLEEKMSQMVCSLENKDECMSC 809


>gi|27261144|gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max]
          Length = 808

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/834 (35%), Positives = 449/834 (53%), Gaps = 53/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   + +  ++   +++   GL      + +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRNGRQETVHFDKITARLKKLSYGLSSDHCDAVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +          Y       ++ 
Sbjct: 61  AETAAAMTANHPDYACLAARIAVSNLHKNTKKSFSETIKIMY-------YHFNERSGLKA 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            + A  ++E +M  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 114 PLIADDVYEIIMK-NAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGQVLERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +    AV+ Y+++S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIDSAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYETLKECAIISKSAGGIGVSIHDIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G++FE  Y  YER     E K  + + A +LW ++L    ETG P+
Sbjct: 350 LFCPSEAPGLTDCWGEKFEELYLQYER-----EGKAMKVVQAQSLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-------- 612
           + FKD CN +S QQ++G + SSNLCTEI   SS  ETAVCNL SI L  +          
Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMES 464

Query: 613 ------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA         L+ VID+N + +E AK+SN  HR IG+G+
Sbjct: 465 HPSKLVGSTCSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL + + SPEA ++  E  E I +HA+  S  LA + G Y ++ GS   +G+
Sbjct: 525 QGLADTFILLGMAFDSPEAQQLNKEIFETIYYHALKTSCGLAAKEGPYETYSGSPISKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G          +  ++R  WD L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWG----------VAPSNRWDWDALREMISKNGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y DGS+  I  IP D
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPAD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A+ R  +IDQ+QSLN+++D+P+  KL  +   AW  GLKT 
Sbjct: 695 LKNIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLQFYAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+      L      + + +T    +  S T+  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDTS--ALREKSNVEDDDNTKMAQMVCSLTNRDECLAC 806


>gi|17974978|ref|NP_536492.1| I4L [Monkeypox virus Zaire-96-I-16]
 gi|17529845|gb|AAL40523.1|AF380138_65 I4L [Monkeypox virus Zaire-96-I-16]
          Length = 771

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G +I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGGYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPRLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIAQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PQVVCDSEICTSC 769


>gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST]
 gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST]
          Length = 809

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/826 (34%), Positives = 435/826 (52%), Gaps = 41/826 (4%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200
            K+ +   DG     +  ++   +++ C GL    V    +       +Y G++  +L+ 
Sbjct: 8   NKMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLRVINGLYSGVTTQELDN 67

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++ TL     +YA + AR  +  L +E      +         M  LY        
Sbjct: 68  LAAETAATLTTDHADYAILAARLAVSNLHKETKKQFSEV--------MHDLYMMENEFLK 119

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            +       H  ++  +   L + + Y+RDF + Y G + L   Y L I G  +E PQ  
Sbjct: 120 TKSPMISDFHYKVIMDNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHM 179

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
            MRVA+G+     E    A+E YNLLS  +F  ++PT+F + T+ PQLSSCFL T+  D 
Sbjct: 180 LMRVAIGIHG---EDIDAAIETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSEDS 236

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+
Sbjct: 237 IEGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYISGTNGISNGLVPMLRVYNNTARYVD 296

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA   YLE WH D+ EFLDL+KNTG +  R  DM  A WIPDLFM+RV  N  
Sbjct: 297 QGGNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEM 356

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D +G+EFE  Y  YE+     E +  R++ A  LW  ++    ETG 
Sbjct: 357 WSLMCPHDCPGLSDTWGEEFEKLYTGYEK-----EGRFIRQVKAQDLWFAIIESQVETGV 411

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FD 617
           P++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI L      ++ +D
Sbjct: 412 PYMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVKQDKTYD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + KL    +T  R L+ +ID+N + + +AK+SN  HR IG+G+ G   A  L+  PY S 
Sbjct: 472 FAKLKEVAKTVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYESE 531

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I + A+ AS ELA   G Y +++GS   +G+   +             
Sbjct: 532 EAQKLNQQIFETIYYGALEASCELAARDGPYETYEGSPVSKGILQYEMWNKEP------- 584

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              T    W ELK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG
Sbjct: 585 ---TDLWNWAELKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSG 641

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L    LWD  M +++  ++GSI  I  IP +++ ++ T +EI     I
Sbjct: 642 EFQVVNHHLLQDLTNMGLWDLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTCI 701

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T+
Sbjct: 702 KMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTV 761

Query: 917 KGVD---------GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                         +++    +    +     +  S  +  EC +C
Sbjct: 762 DKTKLQNGNESNVSRMSNENGSFAERNRRMAEMVCSLENKDECMMC 807


>gi|47225021|emb|CAF97436.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 846

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/756 (36%), Positives = 428/756 (56%), Gaps = 31/756 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              S TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AEISATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNRCH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ + G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVSKETLDIVLQNRDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+   +      A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIHQND---IDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGHSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L++ +G+EFE  Y +YE+     E +V R + A  +W  ++    ETG P+
Sbjct: 350 LMCPDECPGLNECWGEEFEKLYTSYEK-----EGRVKRVVKAQQVWHAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619
           + +KD CN +S QQ++G + SSNLCTEI   +SS+E AVCNL SI L  +      FD+ 
Sbjct: 405 MLYKDACNRKSNQQNLGTIKSSNLCTEIVEYTSSDEVAVCNLASIALNMYVTPECTFDFH 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA+  +  VR L+ +IDIN + + +A++SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAAVTKVVVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS +LA E G Y S++GS   +GV   D  G            
Sbjct: 525 QLLNTQIFETIYYAALEASCQLAAELGPYESYEGSPVSKGVLQYDMWGKTPTEL------ 578

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W +LK+R+   G+RNS  +A  PTA+ A I G ++SI+    N+Y +  +SG+F
Sbjct: 579 ----WDWQQLKERIARHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN  L+ +L +R LW+E M + L  H+GS+ NI+ IP+D+K+++ T +EI    +I+ 
Sbjct: 635 QIVNPHLLKDLTERGLWNEDMKNQLIAHNGSVQNIDGIPNDVKQLYKTVWEISQKTVIKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           A+ R  +IDQ+QS+N+++ EP+  KL  ++   W  
Sbjct: 695 AADRGAFIDQSQSMNIHIAEPNYGKLTSMHFYGWKQ 730


>gi|195146786|ref|XP_002014365.1| GL19156 [Drosophila persimilis]
 gi|194106318|gb|EDW28361.1| GL19156 [Drosophila persimilis]
          Length = 821

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/835 (34%), Positives = 435/835 (52%), Gaps = 51/835 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+  
Sbjct: 11  KLFVVKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVSITLQVINGLYCGVTTQELDNL 70

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               S  L     +YA + AR  +  L +E         +K      + L+         
Sbjct: 71  AAEISAGLTCNHADYAILAARIAVSNLHKET--------KKVFSDVFEDLFKNINRETNT 122

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   H +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ   
Sbjct: 123 ASPMVSEFHYNIVKNNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGKIAERPQHML 182

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+   +      AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D +
Sbjct: 183 MRVALGIHGDD---IDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMNSDSI 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF ++++ A+++K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+Q
Sbjct: 240 EGIFKSVEQCALISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH DV EFLDL++NTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLDLKRNTGKEENRARDLFYALWIPDLFMKRVEANESW 359

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P +   L D++G++FE  Y  YE+     E +  R + A ALW  ++    ETG+P
Sbjct: 360 SLMCPHKCPGLQDVWGEKFEELYVKYEQ-----EGRANRTVEAQALWFAIIESQVETGNP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDY 618
           ++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E AVCNL SI L         +D+
Sbjct: 415 YMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNMFVTPEKTYDF 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +T  + L+ +IDIN + + +AKKSN  HR IG+G+ G   AL L+  PY S E
Sbjct: 475 KKLKEVTKTVAKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGLADALILMRFPYESEE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I F A+ AS ELA+E G Y +++GS   +G+   D              
Sbjct: 535 AGLLNQQIFETIYFGALEASCELAEEFGVYETYEGSPVSKGILQYDMWDKTP-------- 586

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T+   W  LK+ +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+
Sbjct: 587 --TNLWDWQSLKEDIKKHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L + DLWD+ M + +    GSI +IE IP  ++ ++ T +EI     I+
Sbjct: 645 FQVVNHHLLRDLTELDLWDDEMKNKIISSRGSIQDIETIPQKVRDLYKTVWEISVKSTIK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GLKT  YYLR++ A +  + T+ 
Sbjct: 705 MAADRGAFIDQSQSFNVHVAEPNYGKLTSIHFFSWKAGLKTGMYYLRTKPAANAIQFTVD 764

Query: 918 GV-------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                D   N     + +   H   +  S  +   C  C
Sbjct: 765 KKQAASALNDLNGSFNKSTLLDESTNNSHHIESDRERHMAEMVCSLENKDACLSC 819


>gi|4151066|emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/834 (34%), Positives = 446/834 (53%), Gaps = 53/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKKLSYGLSPDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +         P+K+    ++ +Y     R   +
Sbjct: 61  AETAAAMTANHPDYACLAARIAVSNLHK--------TPKKSFSETIKDMYYHVSERSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L I G  +E PQ   M
Sbjct: 113 APLVSDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+     +  +  ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVSVGIH---KDDIESVIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YL+ WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLDPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G++FE  Y NYE+     E K  + + A  LW ++L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGEDFEKLYINYEK-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L  +          
Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPAETAVCNLASIALPRYVREKGVPSES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA         L+ +ID+N + +E AK+SN  HR IG+G+
Sbjct: 465 QPSKLVGSRGSKNRYFDFDKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL + + S EA ++  +  E I +HA+ AS ELA + G Y ++ GS   +G+
Sbjct: 525 QGLADTFMLLGMAFDSREAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+            + +  W  L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 IQPDMWGVTP----------SDKWDWVALREMITKNGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+ +L +  LW  A+ + + Y DGS+  I  IPD+
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLYDLTEMGLWSPALKNRIIYEDGSVQKIPEIPDE 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK+I+   +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++   W  GLKT 
Sbjct: 695 LKEIYKNVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSRGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+      L   P T  +  T    +  S T+  +C  C
Sbjct: 755 MYYLRSRAAADAIKFTVD--TAMLKEKPKTAVDDDTKMAQMVCSLTNREDCLSC 806


>gi|1710391|sp|P50648|RIR1_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|497904|gb|AAA50171.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 806

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/830 (34%), Positives = 437/830 (52%), Gaps = 47/830 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   ++    GL + V    V       MY G+   +L+    
Sbjct: 1   MYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSGIKTCELDELAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +    P+++ + AR   + L +     V +  +    ++     P      I + 
Sbjct: 61  QTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVRGRP---ASLISKE 117

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           V   +L           L  ++ Y RDF ++Y G + L   Y L IN   IE PQ   MR
Sbjct: 118 VYDFILLHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMR 171

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           V++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D + G
Sbjct: 172 VSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEG 228

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V+QGG
Sbjct: 229 IFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGG 288

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N  WTL
Sbjct: 289 GKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTL 348

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L + +G+EFE  Y  YE +         + + A  LW  +L    ETG P++
Sbjct: 349 MCPNECPGLSETWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAILQSQIETGVPYM 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYD 619
            +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L         +F++ 
Sbjct: 404 LYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFK 463

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R LD +I+ N + +++AK SN  HR IG+G+ G      LL  PY S  A
Sbjct: 464 KLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAA 523

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E+     E + + A+  SVELA   G Y S++GS   QG+   D      + +      
Sbjct: 524 KELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNK------ 577

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 WDELK +++  G+RNS  +A  PTA+ + I G ++S +P   N+Y +  +SG+F
Sbjct: 578 ---YWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDLK+++ T +EI    +I+ 
Sbjct: 635 FVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K T+  
Sbjct: 695 AADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDT 754

Query: 919 VDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEVC 953
              K                V+    ST S    + C     +D +C +C
Sbjct: 755 HVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804


>gi|156541405|ref|XP_001600772.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 797

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/823 (32%), Positives = 429/823 (52%), Gaps = 45/823 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           K+ ++  +G     N  ++   + + C GL    +    +       +Y G+   +L+  
Sbjct: 6   KMHVLKRNGFKQEVNFDKITQRIRKLCHGLNMDYIDPLAITQCVINGLYPGVKTVELDNL 65

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               + T+  K P+YA + AR ++  L +E         +K     M  LY        E
Sbjct: 66  AAEIAATMTTKHPDYAILAARIVISSLHKE--------NRKTFSEVMDDLYKVIDPITKE 117

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                   + +++      L + + Y+RDF F Y G + L   Y   ING  +E PQ   
Sbjct: 118 HKPMISEEYNNIIQKHKDRLNSAIDYDRDFVFNYFGFKTLEKSYLFRINGQVVERPQDML 177

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL------SSCFLTT 375
           MRVA+ L     E  ++ +E YN  S  +F  ++PTLF      P        S CF+ T
Sbjct: 178 MRVAVALH---KEDLEKVIETYNYTSERYFTHASPTLFFCMYYTPTNVQVKNTSDCFILT 234

Query: 376 V-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           +  D + GIF  L+  A+++K +GG+G     +R  G  I   NG + G++P ++V N+T
Sbjct: 235 MIEDSIEGIFETLKRCAIISKSAGGIGISVHNIRAKGTAIASNNGFANGLVPMIRVFNNT 294

Query: 435 AVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              ++QG  KR GA   YLE WH D+ EFLDL+KN G +  R  ++  A WIPDLFM+RV
Sbjct: 295 VRFIDQGGNKRPGAFALYLEPWHADIFEFLDLKKNIGKEEYRARELFYALWIPDLFMQRV 354

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N  W+L  P E   L D++G EF   Y  YE      E +  R+I A  LW  +L   
Sbjct: 355 LDNEKWSLMCPHECPGLPDVWGDEFNKLYIKYEE-----EKRYKRQIVARDLWTAILKAQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHF 611
            ETG P++ +KD CN +S QQ++G + SSNLCTEI   SS  E AVCNL SI  N+    
Sbjct: 410 VETGTPYMLYKDHCNRKSNQQNLGTIKSSNLCTEIIQYSSPNEVAVCNLASIAVNMFVDV 469

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +++ KL   ++T  + LD +ID+N + + +A+KSN  HR +G+G+ G   A  L+ 
Sbjct: 470 ETQYYNFLKLKEVVKTVAKNLDKIIDLNHYPLIEAEKSNLMHRPVGIGVQGLADAFLLMR 529

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
            P+ S EA ++  +  E + F A+ AS ELA+E G YSS+ GS   +G+   D   +   
Sbjct: 530 YPFESKEAQQLNIQIFETLYFGALEASCELAKENGPYSSYNGSPVSKGILQYDMWNVTP- 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                    T+   W  LK ++   G+RNS  +A  PTA+ A I G ++S++P   N+Y 
Sbjct: 589 ---------TNLWDWAALKLKIAKYGVRNSLLLAPMPTASTAQILGNNESVEPYTSNIYT 639

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN  L+N+L +R+LWD+ M +++  ++GSI N+  I  DLK+++ T +EI
Sbjct: 640 RRVLSGEFIIVNPHLLNDLTKRNLWDDEMKNEIIANNGSIQNVGHITQDLKELYKTVWEI 699

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +++ A+ R  +IDQ+QS+N+++ +P+ +KL  ++   W  GLKT  YYLR++ A +
Sbjct: 700 PQKIILKMAADRGAFIDQSQSVNVHMAKPTTEKLTSMHFYGWKAGLKTGMYYLRTKPAAN 759

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             + T+     + +A       S+T           +  C +C
Sbjct: 760 ALQFTVNKSLLRPHATEEVKEKSNTIMENK------EDACMMC 796


>gi|19115403|ref|NP_594491.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe 972h-]
 gi|1350600|sp|P36602|RIR1_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|1067207|emb|CAA91952.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe]
          Length = 811

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/835 (34%), Positives = 448/835 (53%), Gaps = 52/835 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++         +K     +Q L+     +  + 
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPKTDKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L I+G   E PQ   M
Sbjct: 113 APMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E  + A+E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P ++V N+TA  V+QG
Sbjct: 230 GIYDTLKMCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA  AYLE WH DV +FL+LRK  G++  R  +M  A WIPDLFM+RV +N  WT
Sbjct: 290 GNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            F P+E   L D++G EF   YE YE+     E +  R + A  +W  +L    ETG+P+
Sbjct: 350 FFCPNEAPGLADVWGDEFVALYEKYEK-----ENRGRRSLPAQKVWYAILQSQVETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S Q++VG +  SNLCTEI   SS +E AVCNL S+ L     + ++++ K
Sbjct: 405 MLYKDSCNRKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++   R L+ +ID+N + + +A++SN  HR +GLG+ G   A   L +P+ S  A 
Sbjct: 465 LHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   A+ AS E+AQ  G Y S++GS   QG+   D             +N 
Sbjct: 525 KLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWN----------VNP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W ELK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 TDLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN +L+ +L +RDLW+E M + L   DGSI  I  IP DLK ++ T +EI    +I+ A
Sbjct: 635 IVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QSLN++L +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+  V
Sbjct: 695 ADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754

Query: 920 ---------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                  +++A P  +     +   +  S  +   CE+C
Sbjct: 755 ALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809


>gi|170088813|ref|XP_001875629.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
 gi|164648889|gb|EDR13131.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
          Length = 881

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/798 (34%), Positives = 421/798 (52%), Gaps = 31/798 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204
           +             ++   +++ C GL +  V       +    +Y G++  +L+     
Sbjct: 4   VFKRGARKERVQFDKITARIQKLCYGLNENFVDPIEFTQKVVAGVYHGVTTVELDNLAAE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L  K P+YA + AR  +  L +E      +         ++ LY     +      
Sbjct: 64  TAAYLTTKHPDYAVLAARIAVSNLHKETKKNFSQV--------IKDLYEYVNPKNRRPAG 115

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                   ++  +   L + + Y RDF+F + G + L   Y L +NG   E PQ   MRV
Sbjct: 116 MISQEIYEIVRENAEALDSAIIYNRDFSFNFFGFKTLERSYLLRLNGRVAERPQHMIMRV 175

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383
           A+G+  ++ ++    VE YNL+S  +F  ++PTLFN+GT HPQLSSCFL  + DD + GI
Sbjct: 176 AVGIHGRDIDRV---VETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGI 232

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
           +  L+  AM++K +GG+G     +R  G++I GTNG S G++P L+  + TA  V+QG  
Sbjct: 233 YDTLKNCAMISKTAGGIGLSIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGN 292

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR GA   Y+E WH DV EFLDLRKN G +  R  D+  A WIPDLFMKRV  N  W+LF
Sbjct: 293 KRPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLF 352

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P+E + L +++  EFE  YE YE+     E +  + I A  LW  +L    ETG P++ 
Sbjct: 353 CPNEAAGLGEVHSAEFEALYEKYEK-----EGRARKSIPAQKLWYAILEAQIETGGPFMV 407

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD  N +S Q+++G + SSNLCTEI   SS EETAVCNL S+ L    +N ++D+ KL 
Sbjct: 408 YKDHANSKSNQKNLGTIKSSNLCTEIIEYSSPEETAVCNLASLALPTFISNGKYDFQKLH 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +     L+ +ID+N + I +A+ SN  HR IG+G+ G       L +P+ SP A E+
Sbjct: 468 DVTKVVAYNLNRIIDVNYYPIPEARLSNMRHRPIGVGVQGLADTFMALRMPFDSPAAKEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I   A+ AS ELA+  G Y ++ GS    G    D  G+            T 
Sbjct: 528 NIQIFETIYHGALEASSELAERDGPYETWMGSPAQLGQLQYDLWGVTP----------TG 577

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VV
Sbjct: 578 LWDWTSLKEKIARTGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVV 637

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             +L+ EL    LWD+ M + +  H+GS+ NI  IPDD+K I+ T +EI    +++ A+ 
Sbjct: 638 CPWLLRELVDLGLWDDNMKNMIIAHNGSVQNIPTIPDDVKAIYKTVWEISQKKVLDLAAD 697

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921
           R  +I Q+QSLN++L  P+  +L  ++   W  GLKT  YYLR+R A S  + T+     
Sbjct: 698 RGAFICQSQSLNVHLQAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAASAIQFTVDQSLL 757

Query: 922 KLNAVPVTDPNSSTHSLG 939
           K      TD         
Sbjct: 758 KEVKQQKTDAAKVKAQAN 775


>gi|126131606|ref|XP_001382328.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
 gi|126094153|gb|ABN64299.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
          Length = 861

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/807 (32%), Positives = 421/807 (52%), Gaps = 35/807 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V+  C GL    V +  +       +Y G++  +L+   
Sbjct: 1   MYVNKRDGRKEPVRFDKITARVQRLCYGLDPNHVDAVAITQRVISGVYHGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++         ++        LY     +    
Sbjct: 61  AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQYSSVSKE--------LYDYINPKTGLH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETYDIILKHTDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + EK    +E YNL+S   F   +PTLFN+GT  PQ+SSCFL  + DD + 
Sbjct: 173 RVAIGIHGDDIEKV---IESYNLMSQRLFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G     +R  GA+I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV QNA WT
Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNADWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP+E   L D+YG EF         +    E +    I A  LW  +L    ETG P+
Sbjct: 350 LFSPNEAPGLADVYGDEF-----EELYERYERENRGRSTIKAQKLWYSILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616
           + +KD CN +S Q+++G++ SSNLC EI   SS EE AVCNL SI L        ++  +
Sbjct: 405 MLYKDACNKKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDDSSLWY 464

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           +++KL    +   + L+ +ID N + + +A++SN  +R I LG+ G       L +P+ S
Sbjct: 465 NFEKLHEVTKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIALGVQGLADTFMALRLPFDS 524

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            +A E+  +  E I   A+ +S+ELAQ  G Y S++GS   +G+   D            
Sbjct: 525 QQARELNIQIFETIYHAAVESSIELAQIEGPYESYEGSPASKGLLQYDLWDRKPTEL--- 581

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD LK+ +   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++
Sbjct: 582 -------WDWDTLKQNLSKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN +L+ +L    +W++AM +++  ++GS+  +  +PD++K ++ T +EI    +
Sbjct: 635 GEFQIVNPYLLRDLVDLGIWNDAMKNNIIANNGSVQGLANVPDEIKALYKTVWEISQKHI 694

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           I+ A+ R  +IDQ+QSLN+++ +P+  KL  ++   W  GLKT  YYLR+++A +  + T
Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAAAAIQFT 754

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +     K     +           I  
Sbjct: 755 VDKNSAKTAGNTIATLEKLNQRKYIAK 781


>gi|241672125|ref|XP_002411450.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215504101|gb|EEC13595.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 779

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 441/814 (54%), Gaps = 42/814 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           +  ++  G   + +  ++   +++ C GL    V   ++  +    +Y G++  +L+   
Sbjct: 1   IFYIVSGGRRETVHFDKITSRIQKLCYGLNMDFVDPCLITQKVINGLYPGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L +E         +K     ++ LY     +    
Sbjct: 61  AETAATMTTKHPDYAILAARIAISNLHKET--------KKVFSEVVEDLYNMVSEKTRLR 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +     + + Y+RDF + + G + L   Y L ING  +E PQ   M
Sbjct: 113 TPMISDETYKIVMENAEAFNSAIIYDRDFNYNFFGFKTLERSYLLKINGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+   +    +  +  YNL+S   F  ++PTLFNSGT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIHGAD---VESVLNTYNLMSEKWFTHASPTLFNSGTPRPQLSSCFLLQMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVNIHCIRASGSYIAGTNGTSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV +FLDL+KNTG +  R  D+  A WIPDLFM+RV Q+  W+
Sbjct: 290 GNKRPGAFAMYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVEQDQMWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   LH++YG++FE  Y  YE     GE +  R++ A  LW  +L    ETG P+
Sbjct: 350 LMCPHECPGLHEVYGEDFEKLYTKYE-----GEKRYRRQVQAQQLWYAILESQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S Q+++G +  SNLCTE+   ++ +E AVCNL SI L        FD+ K
Sbjct: 405 MLYKDACNSKSNQKNLGTIKCSNLCTEVIEYTAPDEVAVCNLASIALNRFVHEGSFDFQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ +IDIN + I +A+KSN +HR IG+G+ G      LL +P+   +A 
Sbjct: 465 LREVSQVITKNLNRIIDINFYPIPEAEKSNKSHRPIGIGVQGLADTFILLRLPFDCEKAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E I + A+ AS +LA+E G Y ++ G    QG+   D  G+            
Sbjct: 525 LLNKQIFETIYYGALEASCDLAKELGPYETYPGCPVSQGILQYDMWGVTP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W  LK R+   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F 
Sbjct: 575 TDMWDWAALKARIAQYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ +L  R LW+E + + L  ++GS+  ++ IPDDLK+++ T +EI    +++ A
Sbjct: 635 VVNQHLLKDLTDRGLWNEDLKNSLIANNGSVQELD-IPDDLKELYRTVWEIPQKNILQMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  ++DQ+QSLN+++ +P+  KL  ++   W +GLKT  YYLR++ A S  + T+   
Sbjct: 694 ADRGAFVDQSQSLNVHIAQPNYGKLTSMHFFGWKLGLKTGMYYLRTKPAASAIQFTVDKT 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                               +  S  +  EC +C
Sbjct: 754 ----------ALRKKEQMNAVTCSLKNKDECLMC 777


>gi|255949828|ref|XP_002565681.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592698|emb|CAP99060.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 863

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/810 (33%), Positives = 427/810 (52%), Gaps = 33/810 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    + +  +  +    +Y G+   +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHIDAAAITQKVISGVYQGVGTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY     +  + 
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSMV--------ISDLYHYVNPKNNKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H  ++      L + + Y+RDF + + G + L   Y L ING+  E PQ   M
Sbjct: 113 APMISKEHYEIVMKHAEELNSAIVYDRDFNYNFFGFKTLERSYLLRINGTVAERPQHLLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+G+  ++ EK   A+E Y+L+S  +F  ++PTLFN+ T  PQL+SCFL  +  D + 
Sbjct: 173 RVAVGIHGEDIEK---AIETYHLMSQKYFTHASPTLFNAATPQPQLASCFLVDMSADSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH DV EFLDLRKN G +  R  D+  A W PDLFMKRV  N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG+EF+  Y  YE+     E +  + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGEEFDALYAKYEQ-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + +KD CN +S Q+++G + SSNLCTEI   S+ +E AVCNL S+ L         ++D+
Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDSARGEYDF 464

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  V  L+ +IDIN + + +AKKSN  HR I LG+ G   A   L +P+ SPE
Sbjct: 465 GKLHEVVQVLVHNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSPE 524

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A++AS ++A++ G Y ++ GS   QG+   D              
Sbjct: 525 ARQLNIQIFETIYHGALTASSDIAKKLGPYETYPGSPVSQGILQYDMWDRTP-------- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 577 --TDLWDWASLKAKIAETGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+ +L    LW + M + +    GS+ NI  IP D+K ++ T +EI    +++
Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQ 694

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN++L EP+  KL  ++   W MGLKT  YYLR+ +A++  + T+ 
Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
                +    V          G  +     
Sbjct: 755 QEQLLVEDTNVARSKKRVGGTGASAYSAIP 784


>gi|71027825|ref|XP_763556.1| ribonucleotide-diphosphate reductase large subunit [Theileria parva
           strain Muguga]
 gi|68350509|gb|EAN31273.1| ribonucleotide-diphosphate reductase large subunit, putative
           [Theileria parva]
          Length = 898

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/803 (34%), Positives = 429/803 (53%), Gaps = 38/803 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESD 197
              +  + ++   G     +  ++   + +   GL   V +  V       MY G+  S+
Sbjct: 54  EAESKIMYVINRHGEKEDVSFDKILNRIRKLSLGLHSLVDAPRVTQSVINGMYTGIRTSE 113

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+     +   +    P+Y+++ A   ++ L +  L    +  +          Y   F 
Sbjct: 114 LDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLNDFSEVIRTLHS------YKHVFN 167

Query: 258 RYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                   A L+ + + +F   +   L  ++ Y RDF ++Y G + L   Y L  NG  +
Sbjct: 168 TN------ASLISDDVFEFVMANKDRLNAEIDYSRDFQYDYFGFKTLERSYLLKTNGKIV 221

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRV+ G+   + E+    ++ Y+L+S  +F  +TPTLFN+GTRHPQ+SSCFL 
Sbjct: 222 ERPQHMIMRVSAGIHCGDLERT---IQTYHLMSQRYFTHATPTLFNAGTRHPQMSSCFLL 278

Query: 375 TVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            + DD   GIF  L + A ++K +GG+G     +R  G++I GTNG S G++P LK+ N 
Sbjct: 279 DMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASGSYIRGTNGISNGIVPMLKIFNA 338

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKG+   YLE WH D+ + LDLRKN G + +R  D+  A WIPDLFMKR
Sbjct: 339 TAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHGAEDQRARDLFYALWIPDLFMKR 398

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  WTL  PDE   LH+++G EFE  Y  YE+Q         + I A  LW  +L  
Sbjct: 399 VEANKNWTLMCPDECRGLHEVWGDEFERLYTQYEQQGL-----GRKTIPAQKLWFAILQS 453

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD CN +S QQ++G + SSNLC EI   ++ +E AVCNL S+ L     
Sbjct: 454 QIETGTPYMLYKDACNAKSNQQNLGTIKSSNLCCEIVQFTNKDEVAVCNLASVALPKFVN 513

Query: 613 NNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                FD+ KL    R     L+ VID N + +++A+ SN  HR +G+G+ G      L+
Sbjct: 514 TQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQARVSNFRHRPMGVGVQGLADTFMLM 573

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
             P+ S EA E+     E + +  +S S++LA++ G Y +++GS   +G+   D  G   
Sbjct: 574 RYPFESDEARELNKRIFETMYYACLSESIDLARQLGTYETYEGSPASKGLLQFDLWGAKV 633

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +          S   WD+LK  ++  G+RNS  +A  PTA+ + I G ++S +P   N+Y
Sbjct: 634 DN---------SLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIY 684

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN  L+N+L +  LW+E M   L  ++GS+ +I+ IP  +K ++ T +E
Sbjct: 685 YRRVLSGEFFVVNPHLLNDLIELGLWNETMKQKLIAYNGSLKHIDEIPQHIKDLYKTVWE 744

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I+ A+ R  +IDQ+QSLN+++++P+  KL  ++   W  GLKT  YYLR++ AT
Sbjct: 745 IKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPAT 804

Query: 910 SVEKSTLKGVDGKLNAVPVTDPN 932
              K T+     +L        +
Sbjct: 805 DAIKFTVDASISQLAKNRAKPNS 827


>gi|557803|emb|CAA86157.1| rir3 [Saccharomyces cerevisiae]
 gi|323304492|gb|EGA58258.1| Rnr3p [Saccharomyces cerevisiae FostersB]
          Length = 885

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/816 (32%), Positives = 421/816 (51%), Gaps = 38/816 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L+  
Sbjct: 16  QMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   +    P+YA + AR  +  L ++      K         ++ L+        +
Sbjct: 76  AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                     +++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   
Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD +
Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+Q
Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  W
Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPW 364

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P
Sbjct: 365 TLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTP 418

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------AN 613
           ++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A          
Sbjct: 419 FMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKT 478

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P
Sbjct: 479 ASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLP 538

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D         
Sbjct: 539 FESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP--- 595

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                       W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y + 
Sbjct: 596 -------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRR 648

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI  
Sbjct: 649 VLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQ 708

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  
Sbjct: 709 KTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAI 768

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           + T+        A  +   +     + +P       
Sbjct: 769 QFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSE 804


>gi|225438479|ref|XP_002278202.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082544|emb|CBI21549.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  680 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/834 (35%), Positives = 449/834 (53%), Gaps = 53/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R   +
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKEMYNHFNERSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L I G  +E PQ   M
Sbjct: 113 APLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KDDIDSAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G+EF   Y  YER     E K  + + A  LW ++L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGQEFVDLYTQYER-----EGKAKKVVQAQNLWFEVLKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTEI   +S++ETAVCNL SI L  +          
Sbjct: 405 MLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVPMES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA         L+ +ID+N + +E AK+SN  HR IGLG+
Sbjct: 465 NPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYPVETAKRSNLRHRPIGLGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL + + SPEA ++  +  E I +HA+ AS ELA   G Y ++ G    +G+
Sbjct: 525 QGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+            +SR  WD L+K +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWGVTP----------SSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y +GS+  +  IP+D
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPED 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 695 LKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+      L     T  +  T    +  S T+  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDTS--ILQERTKTADDDDTKMAQMVCSLTNREECMAC 806


>gi|156836703|ref|XP_001642400.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112918|gb|EDO14542.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 874

 Score =  680 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/815 (34%), Positives = 421/815 (51%), Gaps = 37/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    +    V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVRFDKITARISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++          K     +  LY        + 
Sbjct: 61  AETAAYMTTVHPDYATLAARLAISNLHKQT--------TKLFSQVVDDLYHYINPENSKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++      L + + Y+RDF F Y G + L   Y L + G   E PQ   M
Sbjct: 113 APLVSEEVYNIVMEHKDELNSAIVYDRDFQFNYFGFKTLERSYLLRMKGEVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-Y 381
           RVA+G+     E  + A+E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD   
Sbjct: 173 RVAIGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSLE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIFDTLKECAMISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA+  YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGDWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E   L ++YG+EFE  Y  Y       E +  + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSEAPGLEEVYGEEFEALYNRYVA-----EGRGRKTIKAQKLWYSILEAQTETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN +S  +++G + SSNLC EI   S+ +ETAVCNL SI L A         + 
Sbjct: 405 MLYKDACNTKSNHKNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEVSEDGRSQ 464

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ KL    +   R L+ VID N + +E+A+ SN  HR I LG+ G      LL IP+
Sbjct: 465 TYNFKKLHEISKVVTRNLNKVIDRNYYPVEEARNSNFRHRPIALGVQGLADTFMLLRIPF 524

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA E+     E +   A+ AS ELA++ G Y S+  S   QGV   D          
Sbjct: 525 ESKEAKELNTHIFETMYHAALEASCELAEKEGYYESYPNSPVSQGVLQYDMWNRKP---- 580

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 +    W  LK+++K  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  
Sbjct: 581 ------SDLWDWATLKEQIKKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRV 634

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN +L+ +L    +WDE+M   L   +GSI N+  IP +LK ++ T +EI   
Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWDESMKQHLITDNGSIQNLPNIPQELKDLYKTVWEISQK 694

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I+ A+ R  +IDQ+ S+N+++  P+  KL  ++   W  GLKT  YYLR+++A++  +
Sbjct: 695 TIIDMATDRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            T+        A    D  +       P       
Sbjct: 755 FTIDKSVADQAAKSTADLENLKRPTYYPREFIEGD 789


>gi|170579939|ref|XP_001895047.1| ribonucleoside-diphosphate reductase large chain [Brugia malayi]
 gi|158598142|gb|EDP36102.1| ribonucleoside-diphosphate reductase large chain, putative [Brugia
           malayi]
          Length = 1061

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/816 (33%), Positives = 439/816 (53%), Gaps = 41/816 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   + +  ++   + + C GL    V    +  +    +Y G++  +L+    
Sbjct: 12  YVVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAA 71

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             +  +I K P+YA + +R  +  L ++   +  K  ++        LY     +     
Sbjct: 72  EIAADMITKHPDYATLASRITVSNLHKKTEKSFSKLSRR--------LYNATHPKSGRHM 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + +ERD+ + Y GL+ L   Y L ING   E PQ   MR
Sbjct: 124 PLISKELFDIIQNNANLLDSAIVHERDYLYTYFGLKTLERSYLLQINGELAERPQHMLMR 183

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+     E  + A+E YNL+S   F  +TPTLFNSGT  PQ+SSCFL T+  D + G
Sbjct: 184 VALGIHG---EDIEAALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFEDSIEG 240

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           IF  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+ A  V+QG 
Sbjct: 241 IFETLKKCALISKSAGGIGLNVHCIRASGSAIAGTNGVSNGLVPMLRVFNNAARYVDQGG 300

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH D+ +FL+LRKN GD+  R  D+    W+PDLFM+RV  +  W+L
Sbjct: 301 NKRPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIWSL 360

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   L D +G+ FE  Y  YE      E +  +++ A  LW  ++    ETG P++
Sbjct: 361 MCPAECPGLEDSWGEAFEKLYTQYEE-----EGRYRKQVPARKLWETIVFTQIETGMPYM 415

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDK 620
            +KD CN ++ QQ++G +  SNLCTE+ L SS EE AVCNL SI L     +  ++D+  
Sbjct: 416 VYKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALGRFVTSEMKYDFKM 475

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +  V+ L+ VID N + I +A++SN  HR IG+G+ G   A  L+  P+ S +A 
Sbjct: 476 LHEVTKVVVKNLNKVIDRNYYPIPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKAR 535

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++     E I + A+ AS +LA+E+G Y S++GS   +G+   D  G+            
Sbjct: 536 DLNKRIFETIYYAALEASCDLAKEQGPYESYEGSPISKGILQFDMWGVTP---------- 585

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T +  W  L++++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y ++ +SG F 
Sbjct: 586 TDQCDWGTLREKIAKFGIRNSVLLSPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQ 645

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           + N  L+N+L   DLWD+ M  ++  + GSI NIERIP +++ ++ T +E+    +I+ A
Sbjct: 646 IFNMHLMNDLMHLDLWDDDMKLEIIKNKGSIQNIERIPQEIRDLYRTVWEMSQRDIIDMA 705

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL---------MGLKT-TYYLRSRSATS 910
           + R  +IDQ+QSLN+++  P+   +  ++   W           GLKT  YYLR+R A  
Sbjct: 706 ADRGAFIDQSQSLNIFIARPNYGNITSMHFYGWQKVCTAFLMYKGLKTGMYYLRTRPAVD 765

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             + T+     K       D NS + S  IP++ + 
Sbjct: 766 AVQFTVDKTRLKEYDSVNGDKNSKSSSSSIPATTSE 801


>gi|6322123|ref|NP_012198.1| Rnr3p [Saccharomyces cerevisiae S288c]
 gi|730516|sp|P21672|RIR3_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 2;
           AltName: Full=Ribonucleotide reductase DNA
           damage-inducible regulatory subunit 2; AltName:
           Full=Ribonucleotide reductase R1 subunit 2; AltName:
           Full=Ribonucleotide reductase large subunit 2
 gi|151943097|gb|EDN61432.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|285812585|tpg|DAA08484.1| TPA: Rnr3p [Saccharomyces cerevisiae S288c]
          Length = 869

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/815 (32%), Positives = 420/815 (51%), Gaps = 38/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +     GL    + +  V       +Y G++  +L+   
Sbjct: 1   MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K         ++ L+        + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 113 APMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + 
Sbjct: 173 RVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  WT
Sbjct: 290 GNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A           
Sbjct: 404 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P+
Sbjct: 464 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D          
Sbjct: 524 ESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  +
Sbjct: 694 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            T+        A  +   +     + +P       
Sbjct: 754 FTIDQEVADQAATHIASVSELDRPVYVPKGTKFSE 788


>gi|259147192|emb|CAY80445.1| Rnr3p [Saccharomyces cerevisiae EC1118]
          Length = 885

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/810 (32%), Positives = 421/810 (51%), Gaps = 38/810 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L+  
Sbjct: 16  QMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   +    P+YA + AR  +  L ++      K         ++ L+        +
Sbjct: 76  AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                     +++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   
Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD +
Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+Q
Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  W
Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGSW 364

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P
Sbjct: 365 TLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTP 418

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------AN 613
           ++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A          
Sbjct: 419 FMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKT 478

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P
Sbjct: 479 ASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLP 538

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D         
Sbjct: 539 FESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP--- 595

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                       W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y + 
Sbjct: 596 -------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRR 648

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI  
Sbjct: 649 VLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQ 708

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  
Sbjct: 709 KTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAI 768

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           + T+        A  +   +     + +P 
Sbjct: 769 QFTIDQEVADQAATHIASVSELDRPVYVPK 798


>gi|4151068|emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/834 (35%), Positives = 445/834 (53%), Gaps = 53/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG   + +  ++   +++   GL  +     +V  +    +Y G++ S L+   
Sbjct: 1   MYVWKRDGRQETVHFDKITARLKKLSYGLSPEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L    P+YA + AR  +  L +          +K+    ++ +Y     R   +
Sbjct: 61  AETAAALTANHPDYASLAARIAVSNLHKNT--------KKSFSETVKDMYNHISERSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L ING+ +E PQ   M
Sbjct: 113 APLISDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKINGNVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+     +  + A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +RG G++I GTNG S G+IP L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRGTGSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLD+RKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHSDIFEFLDMRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G++FE  Y  YER     E K  + + A  LW ++L    ETG P+
Sbjct: 350 LFCPSEAPGLADCWGEDFEKLYTKYER-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L  +          
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKEVPDES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+ KLA         L+ +ID+N + +E AK+SN  HR IGLG+
Sbjct: 465 QPSKLVGSRGSKNRYFDFAKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGLGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL + + SPEA ++  +  E I +HA+ AS ELA + G Y ++ GS   +G+
Sbjct: 525 QGLADTFILLGMSFDSPEAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+    R            W  L+  +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWGVTPSDR----------WDWGVLRGMIAKNGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y DGS+  I  IP D
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNRIIYDDGSVQKIPEIPQD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 695 LKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+      L   P T  +  T    +  S ++  EC  C
Sbjct: 755 MYYLRSRAAADAIKFTVDTS--MLKEKPQTAVDDDTKMAQMVCSLSNRDECMAC 806


>gi|85001013|ref|XP_955225.1| ribonucleoside-diphosphate reductase large chain [Theileria
           annulata strain Ankara]
 gi|65303371|emb|CAI75749.1| ribonucleoside-diphosphate reductase large chain, putative
           [Theileria annulata]
          Length = 891

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/817 (34%), Positives = 434/817 (53%), Gaps = 38/817 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESD 197
              +  + ++   G     +  ++   + +   GL   V +  V       MY G+  S+
Sbjct: 54  EAESKIMYVINRHGEKEDVSFDKILNRIRKLSLGLHSLVDAPRVTQSVINGMYTGIRTSE 113

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+     +   +    P+Y+++ A   ++ L +  L    +  +          Y   + 
Sbjct: 114 LDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLNDFSEVIRVLHS------YKHVYN 167

Query: 258 RYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                   A L+ + + +F   +   L  ++ Y RDF ++Y G + L   Y L  NG  +
Sbjct: 168 TN------ASLISDDVFEFVMENKDRLNAEIDYSRDFQYDYFGFKTLERSYLLKTNGKIV 221

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ   MRV+ G+   + E+    ++ Y+L+S  +F  +TPTLFN+GT+HPQ+SSCFL 
Sbjct: 222 ERPQHMIMRVSAGIHCGDLERT---IQTYHLMSQRYFTHATPTLFNAGTKHPQMSSCFLL 278

Query: 375 TVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            + DD   GIF  L + A ++K +GG+G     +R  G++I GTNG S G++P LK+ N 
Sbjct: 279 DMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASGSYIRGTNGISNGIVPMLKIFNS 338

Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QGG KRKG+   YLE WH D+ + LDLRKN G + +R  D+  A WIPDLFMKR
Sbjct: 339 TAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHGSEDQRARDLFYALWIPDLFMKR 398

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  WTL  PDE   L++++G EFE  Y  YE+Q         + I A  LW  +L  
Sbjct: 399 VEANKNWTLMCPDECRGLYEVWGDEFERLYTQYEQQGM-----GRKTIPAQKLWFAILQS 453

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD CN +S QQ++G + SSNLC EI   +S +E AVCNL S+ L     
Sbjct: 454 QIETGTPYMLYKDACNSKSNQQNLGTIKSSNLCCEIVQFTSKDEVAVCNLASVALPKFVN 513

Query: 613 NNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                FD+ KL    R     L+ VID N + +++A+ SN  HR +G+G+ G      L+
Sbjct: 514 TQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQARASNFRHRPMGVGVQGLADTFMLM 573

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
             P+ S EA E+     E + +  +S S++LA++ G Y S++GS   +G+   D  G   
Sbjct: 574 RYPFESDEARELNKRIFETMYYACLSESIDLARQYGTYESYEGSPASKGLLQFDLWGAKV 633

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +          S   WD+LK  ++  G+RNS  +A  PTA+ + I G ++S +P   N+Y
Sbjct: 634 DN---------SLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIY 684

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN  L+N+L    LW+E M   L  ++GS+ +I+ IP  +K+++ T +E
Sbjct: 685 YRRVLSGEFFVVNPHLLNDLIDLGLWNETMKQKLIAYNGSLKHIDEIPSHIKELYKTVWE 744

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I+ A+ R  +IDQ+QSLN+++++P+  KL  ++   W  GLKT  YYLR++ AT
Sbjct: 745 IKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPAT 804

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
              K T+     +L    V   NS      + S  + 
Sbjct: 805 DAIKFTVDASISQLAKSRVKPANSIMSDGNMTSIMSD 841


>gi|323337188|gb|EGA78442.1| Rnr3p [Saccharomyces cerevisiae Vin13]
          Length = 885

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/810 (32%), Positives = 420/810 (51%), Gaps = 38/810 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L+  
Sbjct: 16  QMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   +    P+YA + AR  +  L ++      K         ++ L+        +
Sbjct: 76  AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                     +++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   
Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD +
Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+Q
Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  W
Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPW 364

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P
Sbjct: 365 TLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTP 418

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------AN 613
           ++ +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A          
Sbjct: 419 FMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKT 478

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P
Sbjct: 479 ASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLP 538

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S  A  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D         
Sbjct: 539 FESEXAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP--- 595

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                       W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y + 
Sbjct: 596 -------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRR 648

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI  
Sbjct: 649 VLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQ 708

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  
Sbjct: 709 KTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAI 768

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           + T+        A  +   +     + +P 
Sbjct: 769 QFTIDQEVADQAATHIASVSELDRPVYVPK 798


>gi|68525530|ref|XP_723625.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii str. 17XNL]
 gi|23477980|gb|EAA15190.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii]
          Length = 847

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/841 (34%), Positives = 438/841 (52%), Gaps = 47/841 (5%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
                      + ++   G     +  ++   ++    GL + V    V       MY G
Sbjct: 31  KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   +L+     +   +    P+++ + AR   + L +     + K  +    ++     
Sbjct: 91  IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAKVAEALYSYKDIRGR 150

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                  I + V   ++           L  ++ Y RDF ++Y G + L   Y L IN  
Sbjct: 151 S---ASLISKEVYDFIM------EHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNK 201

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE PQ   MRV++G+ + +    ++A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCF
Sbjct: 202 IIERPQHLLMRVSIGIHIDD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L ++  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V 
Sbjct: 259 LLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFM
Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV +N  WTL  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L
Sbjct: 379 KRVKENRNWTLMCPNECPGLSESWGEEFEKLYTKYEEENL-----GKKTVLAQDLWFAIL 433

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L   
Sbjct: 434 QSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493

Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +FD+ KL    +   R LD +I+ N + I++A+KSN  HR IG+G+ G      
Sbjct: 494 VDREKKEFDFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQGLADTFM 553

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           LL  PY S EA E+     E + + A+  SVELAQ  G Y S+KGS   QG+   D   +
Sbjct: 554 LLRYPYESDEAKELNKRIFETMYYAALEMSVELAQIHGPYESYKGSPASQGILQFDMWNV 613

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             + +            WD LKK++   G+RNS  +A  PTA+ + I G ++S +P   N
Sbjct: 614 KVDNK---------YWDWDLLKKKISMHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP DLK+++ T 
Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTV 724

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++
Sbjct: 725 WEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784

Query: 908 ATSVEKSTLKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEV 952
           AT   K T+     K                V+    ST S    ++C     +D  C +
Sbjct: 785 ATDAIKFTVDTQVAKNAEKLKNADGVAITREVSRETISTESTVTQNACPLRRNNDEPCLM 844

Query: 953 C 953
           C
Sbjct: 845 C 845


>gi|296421726|ref|XP_002840415.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636631|emb|CAZ84606.1| unnamed protein product [Tuber melanosporum]
          Length = 884

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/808 (33%), Positives = 428/808 (52%), Gaps = 35/808 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  D         ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MYVVKRDNRKERVQFDKITARVSRLCYGLDSEHVDAATITQKVISGVYQGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++      +         +  LY     +    
Sbjct: 61  AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSQV--------ISDLYHYVNPKNGRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +      L + + Y++DF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 ASMISTETYETVMRHASELDSAIIYDKDFNYNYFGFKTLERSYLLRINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+G+     E   + +E YNL SS +F  ++PTLFN+GT  PQLSSCFL T+  D + 
Sbjct: 173 RVAVGIHG---EDVDKVIETYNLTSSKYFTHASPTLFNAGTPSPQLSSCFLVTMKGDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N TA  V+QG
Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNIHCIRATGSYIAGTNGSSNGIVPMLRVFNHTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   Y+E WH D+ +F+DLRKN G +  R  D+  A WIPDLFMKRV  NA W+
Sbjct: 290 GNKRPGAFAIYMEPWHADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANAEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D++G+EFE  Y  YE      +    + I A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVWGEEFEALYNKYE----NTKDLARKTIKAQKLWYHILEAQTETGNPF 405

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + +KD CN +S QQ++G + SSNLCTEI   S+ +E AVCNL S+ L  +    +  +D+
Sbjct: 406 MLYKDACNRKSNQQNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDVQRGEYDF 465

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +  ++ L+ +ID+N + + +A+KSN  HR +G+G+ G   A   L +P+ SP+
Sbjct: 466 AKLHEVTKVVIKNLNKIIDVNFYPVPEARKSNTRHRPVGVGVQGLADAFLALRMPFESPQ 525

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A ++  +  E I   A+ AS ELA+ +G Y +++GS   +G    D   +          
Sbjct: 526 AKQLNIQIFETIYHAAVEASTELAEIQGPYPTYEGSPASKGQLQYDLWNVTPTEL----- 580

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  WDELK++VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+
Sbjct: 581 -----WDWDELKEKVKKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 635

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F +VN +L+ +L    LW + M + +   +GSI NI  IPDD+K ++ T +EI    +IE
Sbjct: 636 FQIVNPWLLKDLVDMGLWSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWEISQKKVIE 695

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
                  +IDQ+QSLN+++  P+  KL  ++   W +GLKT  YYLR+++A +  + T+ 
Sbjct: 696 VCGA---FIDQSQSLNIHIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAAAAIQFTVD 752

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
               K+    V     +   L      +
Sbjct: 753 QEALKVADTNVARALPNKKRLPNTGYSS 780


>gi|323098474|gb|ADX22712.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/814 (33%), Positives = 439/814 (53%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y   + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 GKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G  + G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GXXRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR+  A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PQVVCDSEICTSC 769


>gi|190406283|gb|EDV09550.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|256269776|gb|EEU05042.1| Rnr3p [Saccharomyces cerevisiae JAY291]
          Length = 869

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/809 (32%), Positives = 419/809 (51%), Gaps = 38/809 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +     GL    + +  V       +Y G++  +L+   
Sbjct: 1   MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K         ++ L+        + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 113 APMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + 
Sbjct: 173 RVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  WT
Sbjct: 290 GNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A           
Sbjct: 404 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P+
Sbjct: 464 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S  A  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D          
Sbjct: 524 ESEVAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  +
Sbjct: 694 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            T+        A  +   +     + +P 
Sbjct: 754 FTIDQEVADQAATHIASVSELDRPVYVPK 782


>gi|323098671|gb|ADX22908.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/814 (33%), Positives = 438/814 (53%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y   + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 GKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G  + G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GXXRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ SPEA 
Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFXLLNYPFDSPEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I + A+ AS +LA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR+  A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                P        C  C
Sbjct: 754 KX------------------XPQVVCDSEICTSC 769


>gi|213409966|ref|XP_002175753.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
 gi|212003800|gb|EEB09460.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
          Length = 824

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/848 (33%), Positives = 438/848 (51%), Gaps = 65/848 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  V       +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKEKVQFDKITARVSRLCYGLDPEHVDAAAVTQRVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++          KA    +Q L+     +  + 
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQT--------DKAFSSVVQKLHDWVNPKTGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + Y G + L   Y L I+G   E PQ   M
Sbjct: 113 APMISDEVYEIVMKHKDELDSAIIYDRDFTYNYFGFKTLERSYLLRIDGKVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + E    A+E YN +S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIHHDDIE---AAIETYNYMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYETLKTCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA  AYLE WH DV +F++LRK  G +  R  ++  A WIPDLFM+RV +N  W+
Sbjct: 290 GNKRPGAFAAYLEPWHPDVLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            F P+E   L D++G+EF         +    E +  R + A  +W +++    ETG+P+
Sbjct: 350 FFCPNEAPGLADVWGEEF-----EELYERYEREGRARRVLPAQKVWYEIIRAQSETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S Q+++G +  SNLCTEI   SS +E AVCNL SI L     + ++D+ +
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRCSNLCTEIVEYSSPDEVAVCNLASIALPMFIHDGKYDFQQ 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L +  +   R L+ VID+N + + +A++SN  HR +GLG+ G   A   L  PY SPEA 
Sbjct: 465 LHNVAKVVTRNLNRVIDVNYYPVPEARRSNLRHRPVGLGVQGLADAFFKLRYPYESPEAR 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++     E I   A+ AS ELA E G Y +++GS   QG+   D   +            
Sbjct: 525 KLNLLIFETIYHAALEASCELAAEEGPYETYEGSPASQGILQYDMWNVTP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W  LK ++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 TDLWDWASLKAKIAKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN +L+ +L    LWDE M + L  +DGSI  I  IP DLK ++ T +EI    +I+ A
Sbjct: 635 IVNPWLLRDLVDLGLWDEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWEISQRTVIDYA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG- 918
           + R  +IDQ+QSLN+++ +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+   
Sbjct: 695 ADRGAFIDQSQSLNIHIKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPL 754

Query: 919 ---------------------------------VDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                                             + + N+    +     +S  I  S  
Sbjct: 755 SVKQTNSASAPSPAPASIRPKSSASVSAVNKNEKENEQNSSDNQEKVDIYNSKVIACSIK 814

Query: 946 SDTECEVC 953
           +   CE+C
Sbjct: 815 NPEACEMC 822


>gi|50290817|ref|XP_447841.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527152|emb|CAG60790.1| unnamed protein product [Candida glabrata]
          Length = 894

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/804 (35%), Positives = 423/804 (52%), Gaps = 37/804 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + +    G        ++   +   C GL   + +  V       +Y+G++  +L+    
Sbjct: 1   MYVYKRSGRKEPVKFDKITARISRLCYGLDPRIDAVKVTQRIISGVYEGVTTVELDNLAA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +    P+YA + AR  +  L ++      +            LY        +  
Sbjct: 61  ETCAYMTTIHPDYATLAARVAISNLHKQTTKQFSQVVS--------NLYHYINPATGKHA 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + Y+RDF F Y G + L   Y L ING   E PQ   MR
Sbjct: 113 PMISDEVYQIVMDNKDELDSAIVYDRDFQFNYFGFKTLERSYLLRINGEVAERPQHLIMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
           VA+G+  ++    + A+E YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD + G
Sbjct: 173 VALGIHGRD---LEAALETYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEG 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG 
Sbjct: 230 IYDTLKECALISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGG 289

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A W+PDLFMKRV QN  WTL
Sbjct: 290 NKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWVPDLFMKRVEQNGNWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSP     L D YGKEFE  YE YER+         + I A  LW  +L    ETG P++
Sbjct: 350 FSPSSAPGLSDCYGKEFEELYERYEREGRG------KTIKAQKLWYSILEAQTETGTPFM 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQ 615
            +KD CN +S Q+++GV+ SSNLC EI   SS +ETAVCNL SI L A          + 
Sbjct: 404 IYKDACNEKSNQRNLGVIKSSNLCCEIVEYSSPDETAVCNLASIALPAFIETSEDGKTST 463

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +++ KL    +   R L+ VID N + + +AK SN  HR I LG+ G      LL +P+ 
Sbjct: 464 YNFQKLHDIAKVITRNLNKVIDRNYYPVPEAKNSNMRHRPIALGVQGLADTFMLLRLPFD 523

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A ++  +  E I   ++ AS ELAQ+ G Y S++GS   +GVF  D           
Sbjct: 524 SEGAAKLNIQIFETIYHASLEASCELAQKDGPYQSYQGSPISKGVFQFDMWNAKP----- 578

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 579 -----FGMWDWDALRKDILKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVL 633

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +L+ +L    +WDE M   +   +GSI N+  IP +LK ++ T +EI    
Sbjct: 634 SGEFQVVNPYLLRDLVDLGIWDEGMKQHIITQNGSIQNLPNIPQELKDLYKTVWEISQKT 693

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I  A+ R  +IDQ+ SLNL+L  P+  K+  ++   W  GLKT  YYLR+++A++  + 
Sbjct: 694 IINMAADRSVYIDQSHSLNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQF 753

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSL 938
           T+     +  A  + D ++     
Sbjct: 754 TIDQSVAQQAANNIADLSNLKRPS 777


>gi|297268640|ref|XP_002799729.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 762

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/786 (36%), Positives = 443/786 (56%), Gaps = 31/786 (3%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                   +K     M+ LY        +           ++  +   L + + Y+RDF+
Sbjct: 61  --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           + Y G + L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F 
Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G
Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG
Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q  
Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ-- 347

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI  
Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404

Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  S
Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y 
Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++GS   +G+   D   +            T    W+ LK+ +   G+RNS  +A  PT
Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPT 574

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +G
Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++
Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947
              W  GLKT  YYLR+R A +  + TL          +   +     ++  +  S  + 
Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENR 754

Query: 948 TECEVC 953
            EC +C
Sbjct: 755 DECLMC 760


>gi|255566650|ref|XP_002524309.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223536400|gb|EEF38049.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 810

 Score =  676 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/834 (34%), Positives = 446/834 (53%), Gaps = 51/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +     Y G++ + L+   
Sbjct: 1   MYVIKRDGHQETVHFDKITARLKKLSYGLNSEYCDPVLVAQKVCSGFYKGVTTTQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +          +K+    ++ +Y     R  ++
Sbjct: 61  AETAAAMTTNHPDYAILAARVAVSNLHKNT--------KKSFSETIKLMYSHINKRSGQK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L I+G  +E PQ   M
Sbjct: 113 ASLIADDVYEIIMKNATRLDSEIIYDRDFDYDYFGFKTLERSYLLKIDGKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +  + AV+ Y+L++   F  +TPTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAIGIH---KDDVESAVKTYHLMAQRWFTHATPTLFNAGTPQPQLSSCFLGCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+E A+++K +GG+G     VR  G+ I GTNG+S G++P L+V NDTA  V+QG
Sbjct: 230 GIFDTLKECAVISKVAGGIGLSVHNVRATGSFICGTNGESNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G + RR  D+  A WIPDLFM+RV  +  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEERRARDLFYALWIPDLFMERVRGDGSWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G+EFE  Y  YE        +  + I A  LW ++L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGEEFEKLYTFYEDGD-----RAKKVIPARKLWFEILNSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTE+   +S  ETAVCNL SI L             
Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASIALPRFVRERGVPIGS 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                          FD+ KLA    T    L+ +IDIN + ++ A++SN  HR +G+G+
Sbjct: 465 HSSKLVGSRDSKTRYFDFAKLAEITVTITANLNKIIDINYYPVDTARRSNLRHRPMGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ S EA ++  +  E I +HA+ +S ELA   G Y ++KGS   +G+
Sbjct: 525 QGLADTFILLGMPFDSLEAQQLNKDIFETIYYHALKSSSELAAIDGPYETYKGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
             +D  G++   R            W+ L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQMDMWGVIPSDR----------WDWNVLREMISKNGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW  A+ + + Y +GS+  +  IP+ 
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEIGLWSHALKNKIIYENGSVAKVPEIPEQ 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P   KL  ++  AW  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVARGCYIDQSQSLNIHMDQPDLGKLTSLHFYAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+     K   V  T+    T    +  S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTSVLKHENVNSTNDYVDTDMAQMVCSLRNREECMAC 808


>gi|242063422|ref|XP_002453000.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
 gi|241932831|gb|EES05976.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
          Length = 810

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/834 (33%), Positives = 442/834 (52%), Gaps = 51/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +     GL  +     +V  +    +Y G++  ++    
Sbjct: 1   MYVVKRDGRQESVHFDKITARLTRLSYGLSAEHCDPVLVAQKVCAGVYKGITTGEIGELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  +T+            ++ LY  Y  R    
Sbjct: 61  AETAAAMTTSHPDYASLAARIAVSNLHKNTMTSF--------SATVKALYTHYDERSGLM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L  ++ Y+RDF ++Y G + L   Y L I G   E PQ   M
Sbjct: 113 APLIADDVFTIIMKNTARLECEINYDRDFDYDYFGFKTLQRSYLLKIGGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +  + A++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KDDIESAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLSECAAISKSAGGIGVSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDL+KN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHPDIFEFLDLKKNHGKEENRARDLFYALWVPDLFMERVQHNEQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G EF+  Y+ YER     E K  + ++A ALW  +L    ETG P+
Sbjct: 350 LFCPSEAPGLADCWGDEFQNLYQKYER-----EGKAKKVVAAQALWFDILKAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPSETAVCNLASIALPRFVREKGVPIES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA         L+ +IDI+ + IE A++SN  HR IG+G+
Sbjct: 465 HPAKLVGSSGSKNRYFDFDKLAEITSIVTCNLNKIIDISYYPIENARRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ SPEA ++  +  E I +H++ AS ELA + G Y ++ GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYAGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++           +SR  W  +++ +  +G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVVP----------SSRWNWSAIREMISQVGLRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  +PDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLSEMGVWSPVLKNKIIYEDGSVQKITEVPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    +++ A  R  +IDQ+QSLN+++++P+  KL  ++   W  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMEQPNSGKLTSLHFHGWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+     K       + ++      +  S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTTLLKDKQPTSEEEDAQVKMAQVACSLNNREECLAC 808


>gi|68070011|ref|XP_676917.1| ribonucleoside-diphosphate reductase, large subunit, [Plasmodium
           berghei strain ANKA]
 gi|56496825|emb|CAH95342.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium berghei]
          Length = 847

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/841 (34%), Positives = 437/841 (51%), Gaps = 47/841 (5%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192
                      + ++   G     +  ++   ++    GL + V    V       MY G
Sbjct: 31  KRTPSGKPIQTMYVLNRKGEEEDVSFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   +L+     +   +    P+++ + AR   + L +     + K  +    ++     
Sbjct: 91  IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKSTNDDIGKVAEALYTYKDIRGR 150

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                  I + V   ++           L  ++ Y RDF ++Y G + L   Y L IN  
Sbjct: 151 S---ASLISKEVYDFIM------EHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNK 201

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE PQ   MRV++G+ + +    ++A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCF
Sbjct: 202 IIERPQHLLMRVSIGIHIDD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L ++  D + GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V 
Sbjct: 259 LLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFM
Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFM 378

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           KRV +N  WTL  P+E   L + +G EFE  Y  YE +         + + A  LW  +L
Sbjct: 379 KRVKENKNWTLMCPNECPGLSESWGDEFEKLYTKYEEENL-----GKKTVLAQDLWFAIL 433

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P++ +KD CN +S Q+++G +  SNLC EI   +S +E AVCNL SI L   
Sbjct: 434 QSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493

Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +F++ KL    +   R LD +I+ N + I++A+KSN  HR IG+G+ G      
Sbjct: 494 VDREKKEFNFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQGLADTFM 553

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           LL  PY S EA E+     E + + A+  SVELAQ  G Y S+KGS   QG+   D    
Sbjct: 554 LLRYPYESDEAKELNKRIFETMYYAALEMSVELAQVHGPYESYKGSPASQGILQFDMWNA 613

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             + +            WD LKK++   G+RNS  +A  PTA+ + I G ++S +P   N
Sbjct: 614 KVDNK---------YWDWDLLKKKISIHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F VVN  L+ +L  R LWDE M   L  H+GS+  I  IP+DLK+++ T 
Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDLKELYKTV 724

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +I+ A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++
Sbjct: 725 WEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784

Query: 908 ATSVEKSTLKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEV 952
           AT   K T+     K                V+    ST S    ++C     +D  C +
Sbjct: 785 ATDAIKFTVDTQVAKNAEKLKNAEGATITREVSRETISTESTVTQNACPLRRNNDEPCLM 844

Query: 953 C 953
           C
Sbjct: 845 C 845


>gi|332211479|ref|XP_003254846.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Nomascus leucogenys]
          Length = 762

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/786 (36%), Positives = 441/786 (56%), Gaps = 31/786 (3%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                   +K     M+ LY        +           ++  +   L + + Y+RDF+
Sbjct: 61  --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           + Y G + L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F 
Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G
Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG
Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q  
Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-- 347

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI  
Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404

Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  S
Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y 
Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A  PT
Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPT 574

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +G
Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++
Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947
              W  GLKT  YYLR+R A +  + TL          V   +     ++  +  S  + 
Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENR 754

Query: 948 TECEVC 953
            EC +C
Sbjct: 755 DECLMC 760


>gi|332835621|ref|XP_003312921.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Pan
           troglodytes]
          Length = 762

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/786 (36%), Positives = 442/786 (56%), Gaps = 31/786 (3%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                   +K     M+ LY        +           ++  +   L + + Y+RDF+
Sbjct: 61  --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           + Y G + L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F 
Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G
Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG
Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q  
Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-- 347

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI  
Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404

Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  S
Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y 
Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A  PT
Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPT 574

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +G
Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++
Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947
              W  GLKT  YYLR+R A +  + TL          V   +     ++  +  S  + 
Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENR 754

Query: 948 TECEVC 953
            EC +C
Sbjct: 755 DECLMC 760


>gi|194388656|dbj|BAG60296.1| unnamed protein product [Homo sapiens]
          Length = 762

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/786 (36%), Positives = 442/786 (56%), Gaps = 31/786 (3%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                   +K     M+ LY        +           ++  +   L + + Y+RDF+
Sbjct: 61  --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           + Y G + L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F 
Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G
Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG
Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q  
Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-- 347

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI  
Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404

Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  S
Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y 
Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A  PT
Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPT 574

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +G
Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++
Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947
              W  GLKT  YYLR+R A +  + TL          V   +     ++  +  S  + 
Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENR 754

Query: 948 TECEVC 953
            EC +C
Sbjct: 755 DECLMC 760


>gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
 gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
          Length = 838

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/799 (34%), Positives = 426/799 (53%), Gaps = 32/799 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG     +  ++   +++ C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYTGVTTQELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  +  +YA + AR  +  L +E                M  LY         +
Sbjct: 61  AETAATLTTEHADYAILAARLAVSNLHKETKKHFSDV--------MADLYNMENEFLKTK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H  ++  +   L + + Y+RDF + Y G + L   Y L I G  +E PQ   M
Sbjct: 113 SPMISDEHYKIIMDNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+          A+E YNLLS  +F  ++PT+F + TR PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIHG---LDIDAAIETYNLLSERYFTHASPTMFAAATRRPQLSSCFLLTMSDDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDL+KNTG +  R  DM  A WIPDLFMKRV  N  W 
Sbjct: 290 GNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWC 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P +   L + +G+EFE  Y  YE      E +  RK+ A  LW  ++    ETG P+
Sbjct: 350 LMCPHDCPGLPETWGEEFEKLYTTYEN-----EGRYIRKVKAQDLWFAIIESQVETGVPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL SI +      ++ +D+ 
Sbjct: 405 MLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVKPDKSYDFQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   + L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY S EA
Sbjct: 465 KLKEVSKIVTKNLNKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I + A+ AS E+A++ G Y ++ G    +G+   D               
Sbjct: 525 QKLNQQIFETIYYGALEASCEIAEKDGTYETYDGCPVSKGILQYDMWNKAP--------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    W  LK+++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F
Sbjct: 576 -SDLWDWAPLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L + +LWD+ M + +   +GSI +I+ IP  +++++ T +EI     I+ 
Sbjct: 635 QVVNHHLLKDLTELELWDDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QS N+++ EP+  KL  I+   W MGLKT  YYLR++ A +  + T+  
Sbjct: 695 AADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDK 754

Query: 919 VDGKLNAVPVTDPNSSTHS 937
           V             S + S
Sbjct: 755 VKLGQTQSAQNGTTSPSKS 773


>gi|332023837|gb|EGI64061.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 854

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/827 (33%), Positives = 442/827 (53%), Gaps = 39/827 (4%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYD 191
                     K+ ++  +G     +  ++   + + C  L    V    V  +  + +Y 
Sbjct: 21  KMPIKESPRGKMHVIKRNGRKEDVHFDKITSRIVKQCYNLDMNYVDPSAVAIQVIRGLYS 80

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           G++   L+     ++ T+  K P+YA + AR  +  L +E   +  +         M  L
Sbjct: 81  GVTTVVLDNLAAETAATMATKHPDYAILAARIDVSNLHKETKKSFSEV--------MHDL 132

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           +                 + +++  +   L + + Y+RDF + Y+G + L   Y L ING
Sbjct: 133 HYAKNPVTNHYNPIISKHYYNIIKNNAEKLDSAIIYDRDFNYNYIGFKTLERSYLLKING 192

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             +E PQ   MRVA+G+         + +E YN LS  +F  ++PTLFN+ T + Q+SSC
Sbjct: 193 KIVERPQHMLMRVAVGIHEN---NIDKVIETYNYLSERYFTHASPTLFNACTNNQQMSSC 249

Query: 372 FLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           FL T+ DD +  IFG L+  A+++KY+GG+G +   +R        T  ++ G+I  LK+
Sbjct: 250 FLLTLEDDSIKSIFGTLKNCALISKYAGGIGLNVHCIRAKNVEDTSTK-RTNGLISILKL 308

Query: 431 ANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
            ND A+ V+QG  KR GA   YLE WH D+ +FL+L++N GD   R  D+    WIPDLF
Sbjct: 309 YNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELKRNIGDGNMRARDLFYGLWIPDLF 368

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV  +  W+L  P E   L D++G EF+  Y  YE+     E +  +++ A ++W  +
Sbjct: 369 MERVYNDEMWSLMCPHESPGLSDVWGDEFKELYTRYEK-----EGRYKKQVEARSVWLAI 423

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NL 607
           L    ETG P++ +KD CN +S  QH+G V  SNLCTEI   S   E AVCNL SI  N+
Sbjct: 424 LRSQVETGTPYMLYKDHCNRKSNHQHIGTVKCSNLCTEIIEYSGPGEVAVCNLASIAVNM 483

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
             +     FD+DKL +  +   R LD VID+N + IE+ + SNH HR IG+G+ G   A 
Sbjct: 484 FVNIDTKIFDFDKLKTVAKIVTRNLDKVIDVNFYPIEETRTSNHRHRPIGIGIQGLADAF 543

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            L+  P+ S EA E+  +  E + + A+ AS ELA E+G Y +++GS   +G+   D   
Sbjct: 544 LLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYETYQGSPVSKGILQYDMWN 603

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                     +  T+   WDELK ++   G+RNS  +A  PTA+ A I G ++SI+P   
Sbjct: 604 ----------VKPTNLWDWDELKAKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTS 653

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N+YV+  +SG+F +VN  L+ +L  R LWDE M +++  + GS+ NIERIPDDLK+++ T
Sbjct: 654 NIYVRRVLSGEFIIVNPHLLRDLTSRGLWDEDMKNEILANFGSVQNIERIPDDLKELYKT 713

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
            +EI    ++E A+ R  ++DQ+QSLN+++ +P+ +KL  ++   W  GLKT  YYLR++
Sbjct: 714 VWEIPQKVILEMAADRGAFVDQSQSLNVHIGDPTTEKLTSMHFFGWKSGLKTGMYYLRTK 773

Query: 907 SATSVEKSTLKGVDGK-----LNAVPVTDPNSSTHSLGIPSSCTSDT 948
            A +  + T+     +      N    +    ++  +  P+  + D 
Sbjct: 774 PAANPIQFTVDKSKLQNRDSVSNVSDASTSVVNSTPIQSPNQDSDDD 820


>gi|209878422|ref|XP_002140652.1| ribonucleoside-diphosphate reductase, large subunit
           [Cryptosporidium muris RN66]
 gi|209556258|gb|EEA06303.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Cryptosporidium muris RN66]
          Length = 809

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/835 (34%), Positives = 453/835 (54%), Gaps = 52/835 (6%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLET 200
           A ++ ++   G     +  ++   + +   GL   V    V       MY G+  S+L+ 
Sbjct: 2   AERMYVINRRGKEEPVSFDQILSRISKLSYGLHPLVDPARVAQAVINGMYSGIKTSELDE 61

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               +   +    P+++K+ AR  +  L +   + +++   +    +     P       
Sbjct: 62  LASQTCAYMAASHPDFSKLAARISISNLHKNTHSDIFEVANQLISFKDVHGNP------- 114

Query: 261 EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                A LL +++ +F   +   L + + + RDF ++Y   + L   Y L ++   +E P
Sbjct: 115 -----APLLSQTVYEFIIENKDRLNSVIDFSRDFEYDYFAFKTLERSYLLRVDDKIVERP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q   MRV+ G+          A+E Y LLS  +F  +TPTLFN+GT  PQ+SSCF+  + 
Sbjct: 170 QHLLMRVSCGIHYG---NIDAAIETYELLSQKYFTHATPTLFNAGTLRPQMSSCFILKMS 226

Query: 378 DD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           DD + GIF  L++ A ++K +GGLG   + +R  G++I GTNG+S G+IP L+V NDTA 
Sbjct: 227 DDSIDGIFDTLKKCANISKTAGGLGVAISNIRAAGSYIRGTNGRSNGLIPMLRVYNDTAR 286

Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QGG KRKGA+  YLE WH D+ EF+++RKN G +  R  D+  A WIPDLFM+RV +
Sbjct: 287 YVDQGGGKRKGALAVYLEPWHADILEFIEIRKNHGKEEMRCRDIFPALWIPDLFMERVEK 346

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +A WTL  PDE   + D++G +F+  YE+YE+     E +  + I A +LW  +L    E
Sbjct: 347 DANWTLMCPDECPGMQDVWGDQFKELYEHYEK-----EGRGRKTIKAQSLWFALLQSQIE 401

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FAN 613
           TG P+I +KD  N +S QQ++G + SSNLCTEI   +SS+E AVCNL SI L       N
Sbjct: 402 TGTPFICYKDAANRKSNQQNLGTIKSSNLCTEIMEYTSSDEVAVCNLASIGLPRFVDREN 461

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            +FD+ KL   ++ A+R L+ VID   + I + ++SN  HR +GLG+ G      +L  P
Sbjct: 462 KKFDFKKLYEVVKVAIRNLNKVIDRGYYPIPECRRSNLRHRPLGLGVQGLADCFMILRYP 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S +A ++  E  E I + A+ AS ELA++ G Y +F+GS   +G+   D   +     
Sbjct: 522 YESKDARKLNIEIFETIYYAALDASCELAEKYGPYETFQGSPASRGLLQFDLWNV----- 576

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                  +    WD LK+++   G+RNS  +A  PTA+ + + G ++S +P   N+Y + 
Sbjct: 577 ----QPSSGLWNWDLLKEKIAKYGLRNSLLVAPMPTASTSQLLGNNESFEPFTSNIYHRR 632

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN  L+N+L +  LWDE +  ++  ++GS+ NIE IP D++ ++ T +EI  
Sbjct: 633 VLSGEFFVVNPHLLNDLLELGLWDERLKQNIIANNGSVQNIESIPRDIRDLYKTVWEIRQ 692

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +I+ A+ R  +I Q+QSLN+Y+   +  KL  ++   W  GLKT +YYLR++SA +  
Sbjct: 693 KAVIDMAADRGPYICQSQSLNIYIANANYAKLSSMHFYGWKKGLKTGSYYLRTQSAANPI 752

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS--------SCTSDT------ECEVC 953
           + T+     K  A    + ++   +L   S        +C          EC +C
Sbjct: 753 QFTIDQQLLKSTADKNKEQDAKRPALQNSSQGDGRSVMACPLRPANLQGEECLMC 807


>gi|47497381|dbj|BAD19419.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|125584063|gb|EAZ24994.1| hypothetical protein OsJ_08774 [Oryza sativa Japonica Group]
 gi|186920366|gb|ACC95436.1| ribonucleotide diphosphate reductase large subunit 2 [Oryza sativa
           Japonica Group]
          Length = 810

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/834 (34%), Positives = 443/834 (53%), Gaps = 51/834 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   ++    GL  +     +V  +    +Y G++ S L    
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  + +  +  +    H             I +
Sbjct: 61  AETAAAMTASHPDYASLAARIAISNLHKTTMKSFSETIKVMYMH--YDERSGLLAPLIAD 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   ++       +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 119 DVYEIIM------KNTTRLDSEIIYDRDFDYDYFGFKTLERSYLLKVVGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +  + A++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSIGIH---KDDIESAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMNDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLSECATISKCAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNENWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EF+  Y+ YER     E K  + +SA ALW  +L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGDEFQNLYKKYER-----EGKAKKVVSAQALWFDILKAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIGLPRFVREKGVPMES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA       R L+ +ID N + +E AK+SN  HR IG+G+
Sbjct: 465 HPAKLVGSNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ S EA ++  +  E I +HA+ AS E+A + G Y ++ GS   +G+
Sbjct: 525 QGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W +L++ +  +G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVVPSDR----------WNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 695 LKAIYRTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+     K       + +  +    +  S  +  EC  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTTLLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 808


>gi|297447|emb|CAA46232.1| ribonucleotide reductase, large subunit [Schizosaccharomyces pombe]
          Length = 811

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/835 (34%), Positives = 446/835 (53%), Gaps = 52/835 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++         +K     +Q L+     +  + 
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPKTDKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L I+G   E PQ   M
Sbjct: 113 APMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E  + A+E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +GG+G     +R  G++I GTNG S G++P ++V N+TA  V+QG
Sbjct: 230 GIYDTLKMCAMISKTAGGIGIYIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA  AYLE WH DV +FL+LRK  G++  R   M  A WIPDLFM+RV +N  WT
Sbjct: 290 GNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            F P+E   L D++G EF   YE YE+     E +  R + A  +W  +L    ETG+P+
Sbjct: 350 FFCPNEAPGLADVWGDEFVALYEKYEK-----ENRGRRSLPAQKVWYAILQSQVETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S Q++VG + SSNLCTEI   SS +E AVCNL S+ L     + ++++ K
Sbjct: 405 MLYKDSCNRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++   R L+ +ID+N + + +A++SN  HR +GLG+ G   A   L +P+ S  A 
Sbjct: 465 LHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   A+ AS E+AQ  G Y S++GS   QG+   D             +N 
Sbjct: 525 KLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWN----------VNP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W E K+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 TDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN +L+ +L +RDLW+E M + L   DGSI  I  IP DLK ++ T +EI    +I+ A
Sbjct: 635 IVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QSLN++L +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+  V
Sbjct: 695 ADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754

Query: 920 ---------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                  +++A P  +     +   +  S  +   CE+C
Sbjct: 755 ALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809


>gi|194363984|ref|YP_002026594.1| ribonucleoside-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia R551-3]
 gi|194346788|gb|ACF49911.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 803

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/841 (39%), Positives = 469/841 (55%), Gaps = 50/841 (5%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           E  + +        +  P A  + +   +GT    +  ++   V+ +  GL  V    V 
Sbjct: 4   ESSATIEKESEFLLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVA 63

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           + T   +Y+G +  +L+   I ++  LI +EP Y ++ AR L   + +EV          
Sbjct: 64  TRTISGLYNGATTRELDELSIRTAALLIGEEPEYGRLAARLLANYIAKEVSGQEI----- 118

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQ 299
                        F + +  G +  L+++ +++F   +   L + +    D  F+Y GL+
Sbjct: 119 -----------YAFSQSVGRGHEVGLINDRLLNFVQTNARKLNDAIDMSLDLNFDYFGLR 167

Query: 300 ILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            LYDRY L        IE PQ FF+R+A  L+    E    A+  Y  + +  ++ S+PT
Sbjct: 168 TLYDRYLLRHPHTRKVIETPQQFFLRIASALS----EDVPEALALYKRMGNLDYLPSSPT 223

Query: 358 LFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFNSGT H QLSSCFL     D L  I+    + A L+K+SGG+G  +T VR  G+ I  
Sbjct: 224 LFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKS 283

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG S G++P+LK  + +  AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR 
Sbjct: 284 TNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDESRRA 343

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           H++N ANWIPDLFMKRV  +  W+LF P  V +  DL+G+ FE AY   E Q      K 
Sbjct: 344 HNLNLANWIPDLFMKRVEADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQ-----GKA 398

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSS 594
            R ISA  L+ +M+  L ETG+ W+TFKD CN  S Q  +   V+H SNLCTEI   +S+
Sbjct: 399 NRTISARKLYSRMMRTLAETGNGWMTFKDKCNRASNQTLRAGNVIHLSNLCTEILEVTSA 458

Query: 595 EETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           EETAVCNLGSINL  HF  N +FD+DKLA T+R AVR LD VID+N + IE A++ N   
Sbjct: 459 EETAVCNLGSINLGNHFDGNGEFDFDKLADTVRLAVRQLDRVIDLNFYPIESARRGNLRW 518

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG MG Q       +P+   EA  ++ +  E I FHA+  SVELAQERG + SF  
Sbjct: 519 RPVGLGCMGLQDVFFRKRLPFDGAEARALSKKIAETIYFHALETSVELAQERGKHPSFAD 578

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           +    G    D+  ++ E              WD L++R+K  G+RNS  +AIAPTATIA
Sbjct: 579 TRAASGELQFDAWNVVPED----------AERWDSLRERIKEHGLRNSLMIAIAPTATIA 628

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           +I G  + ++P   NL+ +  +SGDF  VN +LVNELK+   W   M   +K  +GSI  
Sbjct: 629 SIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLGHWTPEMRDAIKLAEGSIQG 688

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           I +IP+ L+ ++ TA+E+    LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW
Sbjct: 689 ITQIPETLRHVYRTAWELPMRSLIDMAADRGAFIDQSASLNLFMESPNIGAMSSMYMYAW 748

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             G+KTTYYLRSR AT + K+T+       +A         +    I  S  +   CE C
Sbjct: 749 KQGIKTTYYLRSRPATKIAKTTVS------HAAGAAPEKVFSPEEAIACSLENPEACEAC 802

Query: 954 Q 954
           Q
Sbjct: 803 Q 803



 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 1  MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
          M          E  F       P     + V KRNG     D +KI RA+ +   + EG 
Sbjct: 1  MTTESSATIEKESEF---LLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQR---SSEGL 54

Query: 61 GASRSIRV 68
           A   +RV
Sbjct: 55 HAVDPMRV 62


>gi|52000447|dbj|BAD44751.1| NSG5 protein [Chlamydomonas reinhardtii]
          Length = 878

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/823 (34%), Positives = 438/823 (53%), Gaps = 49/823 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG        ++   + +   GL      + +V  +    +Y G++ S+L+  
Sbjct: 3   SMYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDEL 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  L    P+YA + AR  +  L +          +K+    M  LY     R  E
Sbjct: 63  AAETAAALTSTHPDYAILAARIAVSNLHKNT--------EKSFSKTMDKLYTYRNPRNGE 114

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E          ++  +   L ++++Y+RDF ++Y G + L   Y L I+G  +E PQ   
Sbjct: 115 EAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHML 174

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+     E  + A+  Y+ +S   F  ++PTLFN GT  PQLSSCFL  + DD +
Sbjct: 175 MRVAVGIH---KEDIEAAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSI 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E A+++K +GG+G     +RG G++I GTNG S G++P L+V NDTA  V+Q
Sbjct: 232 DGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 291

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKGA   Y+E WH DV +FLDLRKN G +  R  D+    WIPDLFM+RV  +  W
Sbjct: 292 GGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEW 351

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +LF P+E   L D +G+EFE  Y  YE+     E +  R + A  LW  +L    ETG+P
Sbjct: 352 SLFCPNEAPGLADCWGEEFERLYLKYEQ-----EGRSRRVVRAQQLWFAILEAQVETGNP 406

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------- 612
           ++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L            
Sbjct: 407 YMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPG 466

Query: 613 -------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
                        N  FD++KLA   +   R L+ +ID+N +   KA++SN  HR IGLG
Sbjct: 467 WESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHRPIGLG 526

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G      LL + + SPEA E+  +  E +   A+S S ELA+  G Y ++ GS   QG
Sbjct: 527 VQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVSQG 586

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           V   D  G+     D        R  W+EL+ R+   G+RNS  +A  PTA+ + I G +
Sbjct: 587 VLQPDMWGVKPTGVDG-------RCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNN 639

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +  +P   N+YV+  +SG+FTVVN  L+++L +  +W   + ++L   +GS+  +  IP+
Sbjct: 640 ECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLEL-EIPE 698

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GLKT
Sbjct: 699 ELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKT 758

Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             YYLR+++A    K T+                ++  +  + 
Sbjct: 759 GMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAATAATPQMK 801


>gi|159485006|ref|XP_001700540.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
 gi|158272180|gb|EDO97984.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
          Length = 878

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/823 (34%), Positives = 438/823 (53%), Gaps = 49/823 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG        ++   + +   GL      + +V  +    +Y G++ S+L+  
Sbjct: 3   SMYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDEL 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  L    P+YA + AR  +  L +          +K+    M  LY     R  E
Sbjct: 63  AAETAAALTSTHPDYAILAARIAVSNLHKNT--------EKSFSKTMDKLYTYRNPRNGE 114

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E          ++  +   L ++++Y+RDF ++Y G + L   Y L I+G  +E PQ   
Sbjct: 115 EAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHML 174

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+     E  + A+  Y+ +S   F  ++PTLFN GT  PQLSSCFL  + DD +
Sbjct: 175 MRVAVGIH---KEDIESAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSI 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E A+++K +GG+G     +RG G++I GTNG S G++P L+V NDTA  V+Q
Sbjct: 232 DGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 291

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KRKGA   Y+E WH DV +FLDLRKN G +  R  D+    WIPDLFM+RV  +  W
Sbjct: 292 GGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEW 351

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +LF P+E   L D +G+EFE  Y  YE+     E +  R + A  LW  +L    ETG+P
Sbjct: 352 SLFCPNEAPGLADCWGEEFERLYLKYEQ-----EGRSRRVVRAQQLWFAILEAQVETGNP 406

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------- 612
           ++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL SI L            
Sbjct: 407 YMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPG 466

Query: 613 -------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
                        N  FD++KLA   +   R L+ +ID+N +   KA++SN  HR IGLG
Sbjct: 467 WESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHRPIGLG 526

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G      LL + + SPEA E+  +  E +   A+S S ELA+  G Y ++ GS   QG
Sbjct: 527 VQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVSQG 586

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           V   D  G+     D        R  W+EL+ R+   G+RNS  +A  PTA+ + I G +
Sbjct: 587 VLQPDMWGVKPTGVDG-------RCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNN 639

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +  +P   N+YV+  +SG+FTVVN  L+++L +  +W   + ++L   +GS+  +  IP+
Sbjct: 640 ECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLEL-EIPE 698

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           +LK ++ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  KL  ++  AW  GLKT
Sbjct: 699 ELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKT 758

Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             YYLR+++A    K T+                ++  +  + 
Sbjct: 759 GMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAATAATPQMK 801


>gi|298711866|emb|CBJ32887.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 797

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/822 (32%), Positives = 432/822 (52%), Gaps = 40/822 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +   C GL    V   ++  +    +Y G++ S+L+   
Sbjct: 1   MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++     + P+ + + AR  +  L +    T  K         ++ L+     +  E 
Sbjct: 61  AQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKT--------IEMLHTYVLPQTGER 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + ++ ERDF ++Y G + L   Y L  NG  +E  Q   M
Sbjct: 113 SSLISDEVFRIVMENKEVLDSAIQDERDFEYDYFGFKTLEKSYLLRANGFVVERIQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E Y+L+S   F  ++PTLFN+GT  PQLSSCFL  V  D + 
Sbjct: 173 RVAIGIHQ---TDIDSAIESYDLMSQRLFTHASPTLFNAGTPRPQLSSCFLLNVKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A ++K++GG+G     +R   +++ G+NG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKQCACISKFAGGIGVSIHSIRATDSYVAGSNGSSNGLVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   Y E WH D+  FLDLRKN G++  R  D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GGKRKGSFAMYREPWHADIFAFLDLRKNHGNELERARDLFYALWIPDLFMKRVEADGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D++G EFE  Y++YE      +    R I A  LW  ++    ETG P+
Sbjct: 350 LFCPNEAPGLPDVFGDEFEALYKSYEA-----KGLARRSIKARQLWVAIMDAQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           + FKD CN +S Q+++G + SSNLCTEI   +  +E AVCNL SI+L A  +        
Sbjct: 405 MLFKDACNSKSNQKNLGTIKSSNLCTEIIEYTDPDEVAVCNLASISLPAFVSAGEDGQPA 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +L    +   R L+ VID+N + +E+AK+SN  HR +GLG+ G   A  ++  P+ 
Sbjct: 465 FDFHRLYEVTKVVTRNLNRVIDVNFYPVEEAKRSNFRHRPVGLGVQGLADAFIMMRFPFE 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +A ++  +  E I F A+ ASVELA+++G Y +++GS   QG+   D  G+    R  
Sbjct: 525 SEKAAKLNRDIFETIYFGAVEASVELAEKQGTYETYEGSPASQGLLQYDMWGVTPSDR-- 582

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  LK ++   G+RNS  +A  PTA+ A I G ++S++P   N+Y +  +
Sbjct: 583 --------WDWAGLKAKMAQHGLRNSLLLAPMPTASTAQILGNNESVEPFTSNMYNRRVL 634

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN  L+ +L  R LW  ++ + +    GS+  ++ IP DLK ++ T +EI    
Sbjct: 635 AGEFAVVNKHLLRDLTTRGLWTPSVRNQIIADQGSVQRVD-IPQDLKDLYKTVWEIKQKV 693

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ ++ R  +I Q+QS+N+++ +P+  KL  ++  +W  GLKT  YYLR++      + 
Sbjct: 694 VIDMSADRGAFICQSQSMNVHMADPTQGKLTSMHFYSWKKGLKTGMYYLRTKPKAHAIQF 753

Query: 915 TLKGVDGKLNAVPVT---DPNSSTHSLGIPSSCTSDTECEVC 953
           T+                            +    D EC  C
Sbjct: 754 TVDQESLAAAVREQALLRREGKGGDESAKANEEEDDGECLTC 795


>gi|296217188|ref|XP_002754896.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Callithrix jacchus]
          Length = 762

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/786 (36%), Positives = 441/786 (56%), Gaps = 31/786 (3%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E 
Sbjct: 1   MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
                   +K     M+ LY        +           ++  +   L + + Y+RDF+
Sbjct: 61  --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           + Y G + L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F 
Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G
Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           ++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG
Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q  
Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR- 348

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI  
Sbjct: 349 ----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404

Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  S
Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLS 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E G Y 
Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYE 524

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A  PT
Sbjct: 525 TYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPT 574

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +G
Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++
Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947
              W  GLKT  YYLR+R A +  + TL          V   +     ++  +  S  + 
Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMMCSLENR 754

Query: 948 TECEVC 953
            EC +C
Sbjct: 755 DECLMC 760


>gi|241854846|ref|XP_002415982.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215510196|gb|EEC19649.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 766

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/784 (34%), Positives = 438/784 (55%), Gaps = 32/784 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDL 198
           +   + ++  +G   S +  ++   + + C GL    V   ++  +    +Y G++  +L
Sbjct: 6   LRNSMFVVKRNGRHESIHFDKITSRISKLCYGLNTDFVDPCVITQKVIVGLYPGVTTVEL 65

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     ++ T+  K P+YA + AR  +  L +E         +K     M  LY      
Sbjct: 66  DNLAAETAATMTTKHPDYAILAARLAISNLHKET--------KKVFSEVMTDLYHMVNET 117

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +           ++  +  +L + + Y+RDF + Y G + L   + L ING  +E PQ
Sbjct: 118 NGKSTPMISEETYKIVMNNADFLNSSIVYDRDFNYNYFGFKTLERAHLLKINGKVVERPQ 177

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
              MRV++G+   +      A+E YNL+S   F  ++PTLFN+GT  PQLSSCFL  + D
Sbjct: 178 HMLMRVSIGIHGDD---LSSAIETYNLMSEKWFTQASPTLFNAGTPKPQLSSCFLLQMKD 234

Query: 379 D-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L++ A+++K +GG+G +   +R  G++I GTNG S G++P L+V N+TA  
Sbjct: 235 DSIEGIYDTLKQCALISKSAGGIGINIHNIRASGSYIAGTNGTSNGIVPMLRVYNNTARY 294

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA+  YLE WH DV +FLDL+KNTG +  R  D+    WIPDLFMKRV ++
Sbjct: 295 VDQGGNKRPGAIAIYLEPWHADVFDFLDLKKNTGKEESRARDLFYGLWIPDLFMKRVEED 354

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P E   L D+YG++FE  Y  YE      E +  R++ A  LW  ++    ET
Sbjct: 355 GIWSLMCPHESPHLQDVYGEDFEKLYVRYE-----TEKRYRRQVRAQQLWSAIIESQTET 409

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P++ +KD CN +S Q++VG +  SNLCTEI   +S +E AVCNL SI L     +  F
Sbjct: 410 GTPYMLYKDACNRKSNQKNVGTIKCSNLCTEIVEYTSVDEVAVCNLASIALNRFVYHGHF 469

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D++KL    R   R L+ +ID+N + I +AK SN  HR IG+G+ G   A  LL +P+  
Sbjct: 470 DFEKLRQVTRVVTRNLNKIIDVNYYPIPEAKLSNMRHRPIGIGVQGLADAFILLRLPFDC 529

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA EI  +  E I + A+  S EL+++ G Y ++ GS   QG+   D   +        
Sbjct: 530 DEACEINKKIFETIYYGALEESCELSKKFGPYETYPGSPVSQGILQYDMWNVTP------ 583

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
               ++   W  LK+R+K+ G+RNS  +A  PTA+ A I G +++++P   N+Y +  +S
Sbjct: 584 ----SNLWDWSALKERIKSFGIRNSLLVAPMPTASTAQILGNNEAMEPYTSNVYTRRVLS 639

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G+F +VN  L+ +L +  LW++ + ++L  ++GS+  +  IP +LK ++ T +EI    +
Sbjct: 640 GEFQIVNHHLLKDLTRLGLWNDNLKNELIANNGSVQKL-NIPKELKMLYRTVWEISQKNI 698

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           +E ++ R  ++DQ+QSLN+++ +P+  KL  ++   W +GLKT  YYLR++ A +  + T
Sbjct: 699 LEMSADRGAFVDQSQSLNIHIAQPTYGKLTSMHFCGWKLGLKTGMYYLRTKPAVNAIQFT 758

Query: 916 LKGV 919
           +   
Sbjct: 759 VDKS 762


>gi|294471317|gb|ADE80903.1| RR1 [Spodoptera litura NPV]
          Length = 772

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/783 (33%), Positives = 427/783 (54%), Gaps = 32/783 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            +   DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  + 
Sbjct: 6   YVTKRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIA 65

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ ++     +Y+ + AR  +  L +E         +    + +  +Y     +     
Sbjct: 66  ETAASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAAT 117

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                 H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MR
Sbjct: 118 PMISDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMR 177

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+  ++      A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + G
Sbjct: 178 VAIGIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEG 234

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG 
Sbjct: 235 IYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGG 294

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L
Sbjct: 295 NKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSL 354

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P +   L D +G EFE  YE YE+Q      +  +++SA  LWR ++    ETG P++
Sbjct: 355 MCPMQSPGLADCHGVEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYM 409

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYD 619
            +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D++
Sbjct: 410 LYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFE 469

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +L    +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S  A
Sbjct: 470 RLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAA 529

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E+  +  E I + A+ AS ELA + G Y ++KGS   +G    D               
Sbjct: 530 AELNKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------GAT 580

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            ++   W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F
Sbjct: 581 PSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEF 640

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  
Sbjct: 641 QVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRM 700

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+  
Sbjct: 701 AADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDK 760

Query: 919 VDG 921
              
Sbjct: 761 TAA 763


>gi|307196361|gb|EFN77956.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 849

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/824 (33%), Positives = 445/824 (54%), Gaps = 33/824 (4%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMY 190
           +   +      K+ ++  +G     +  ++   + + C  L    V    V  +  + +Y
Sbjct: 20  AKMPAKEVARGKMHVIKRNGRKEDVHFDKITSRIAKQCYSLNMNYVDPSAVAIQVIRGLY 79

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            G++  +L+     ++ T+  + P+YA + AR  +  L +E   +  +         M  
Sbjct: 80  SGVTTVELDNLAAETAATMATQHPDYAILAARIDVSNLHKETKKSFSEV--------MHD 131

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           L+        E        + +++  +   L + + Y+RDF + Y+G + L   Y L IN
Sbjct: 132 LHYARDPITNEPNPVISEHYYNIIKRNAERLDSAIIYDRDFNYNYMGFKTLERSYLLKIN 191

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G  +E PQ   MRVA+G+     +   + +E Y+ LS  +F  ++PTLFN+ T++ Q+SS
Sbjct: 192 GKIVERPQHMLMRVAVGIH---EDDINKVIETYDYLSERYFTHASPTLFNACTKNQQMSS 248

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL T+ DD + GI+G L++ A+++KY+GG+G +   +R            + G+I  LK
Sbjct: 249 CFLLTLNDDSIKGIYGTLKKCALISKYAGGIGINVHCIRAKDTDDTYDTDATNGLISVLK 308

Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           + ND A+ V+QG  KR GA   YLE WH D+ +FL+L++N GD   R  D+  A W+PDL
Sbjct: 309 LYNDIAIYVDQGGNKRPGAFAVYLEPWHADIFDFLELKRNIGDGNLRARDLFYALWVPDL 368

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  +  W+L  P E   L D++G EF   Y  YE+     E +  R++ A  +W  
Sbjct: 369 FMERVFDDEVWSLMCPYESPGLADVWGDEFNELYTRYEK-----EGRYKRQVQARDVWVT 423

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--N 606
           +L    ETG P++ +KD CN +S  QH+G +  SNLCTEI   SS EE AVCNL SI  N
Sbjct: 424 ILRSQVETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCTEIVEYSSPEEVAVCNLASIALN 483

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +  +     FD+DKL + ++   R LD VID+N + I + K+SN  HR IG+G+ G   A
Sbjct: 484 MFVNTNKKTFDFDKLKTVVKIVTRNLDKVIDVNFYPIPETKRSNRRHRPIGIGVQGLADA 543

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
             L+  P+ S EA E+  +  E + + A+ AS ELA E+G Y +++GS   +G+   D  
Sbjct: 544 FLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYETYEGSPVSKGILQYDMW 603

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                      +  T    WDELK ++   G+RNS  +A  PTA+ A I G ++SI+   
Sbjct: 604 N----------VKPTDLWDWDELKTKIAKHGVRNSLLIAPMPTASTAQILGNNESIEAYT 653

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N+YV+  +SG+F ++N  L+ +L  R LW + M +++  + GS+ NIERIPDDLK+++ 
Sbjct: 654 SNIYVRRVLSGEFVIINPHLLRDLTVRGLWGKDMQNEILANFGSVQNIERIPDDLKELYK 713

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T +EI    ++E A+ R  +IDQ+QSLN+++ +PS +KL  ++   W  GLKT  YYLR+
Sbjct: 714 TVWEISQKVILEMAADRGAFIDQSQSLNIHIADPSTEKLTSMHFFGWRSGLKTGMYYLRT 773

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           + A +  + T+     +      +  +  +  +  P     ++E
Sbjct: 774 KPAANPIQFTVDKSKLQSRDSLSSSTSDISSPIKSPDKDADNSE 817


>gi|281204858|gb|EFA79053.1| ribonucleotide reductase large subunit [Polysphondylium pallidum
           PN500]
          Length = 868

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/831 (33%), Positives = 430/831 (51%), Gaps = 39/831 (4%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYK 187
           + SK  +    K+ ++  DGT  S    ++   ++  C        + +    V  +   
Sbjct: 9   NTSKEQSTPNSKMYVIKRDGTKASVQYDKITQRLQSLCDLEPKLNGEVIDPSEVTQKVAS 68

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            ++ G+  ++L+     ++  +  K P+Y  + AR  +  L ++  ++  +  +K     
Sbjct: 69  GVFPGVKTTELDNLAAETAAYMSTKHPDYGVLAARISVSNLHKQTSSSFLETVEK----- 123

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
               +     +  +          +++      L   + Y RDF +++ G + L   Y  
Sbjct: 124 ---QHSFTNPKTGQPAPLVSDELYNLVKIHHKRLEEAIDYRRDFEYDFFGFKTLERSYLH 180

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            IN   IE PQ   MRV++G+   +      A+E YNLLS   F  +TPTLFNSGT  PQ
Sbjct: 181 RINDIIIERPQQMLMRVSIGIHGDD---IDSAIETYNLLSQRLFTHATPTLFNSGTPSPQ 237

Query: 368 LSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +SSCFL  +  D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++P
Sbjct: 238 MSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTNGTSNGLVP 297

Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+
Sbjct: 298 MLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALWV 357

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            DLFM+RV  +  W LF P+E   L D +G EF   YE YE           R I A  L
Sbjct: 358 SDLFMERVENDDVWNLFCPNEAPGLADCWGDEFRALYEKYE----NTPGLSRRTIKAQDL 413

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++    ETG P+  +KD CN +S QQ++G +  SNLCTEI   +S++E AVCNL SI
Sbjct: 414 WFTIIESQIETGTPYFLYKDACNSKSNQQNLGTIQCSNLCTEIIQYTSADEVAVCNLASI 473

Query: 606 NLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            L  +   N+      FD+  L    +T  R L+ +ID N + + +A+ SN  HR IG+G
Sbjct: 474 ALPKYVRENKETGKPEFDHQYLFEVTKTITRNLNKIIDRNYYPVLEARNSNFRHRPIGIG 533

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G       L +P+ S  A  +  E  E I F A++AS ELA+  G Y SFKGS   +G
Sbjct: 534 IQGLADVFIRLRLPFESNGAAILNKEIAETIYFAALTASAELAERDGPYESFKGSPASKG 593

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
               D   +    R            W  LK+++ + G+RNS  +A  PTA+ + I G +
Sbjct: 594 TLQQDFWNVTPSPR----------WDWTSLKQKIISTGLRNSLLIAPMPTASTSQILGNN 643

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           ++ +P   N+Y +  ++G+FTVVN  L+ +L   DLW   M + +  H GSI NIE IPD
Sbjct: 644 EAFEPYTSNIYSRRVLAGEFTVVNKQLLQDLMDLDLWTPEMKNQIIAHRGSIQNIEDIPD 703

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+++ T +EI    LI+ A+ R  +IDQ+QS N+++ EP+ +KL  ++  AW  GLKT
Sbjct: 704 DLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFQKLTSMHFYAWKKGLKT 763

Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             YYLR+R+A    + T+             +  ++      PS+      
Sbjct: 764 GMYYLRTRAAADAIQFTVDQTMLANKEQKDANATATADGAQPPSTPIRTPT 814


>gi|187903102|ref|YP_001883393.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
 gi|187384751|gb|ACD03524.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
          Length = 785

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/825 (33%), Positives = 434/825 (52%), Gaps = 55/825 (6%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESD 197
           P   KL +    G +      ++   +E  C  L    V    ++ +    +Y G++ ++
Sbjct: 3   PNNTKLFVTKRGGFVQDIVFDKIRKRIESLCYNLNADYVHPSTIVVKVVAGLYPGVTTAE 62

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+T    ++ +++   P+Y  + AR  +  + ++   +  +         M+ LY     
Sbjct: 63  LDTLAAETAASMMTLHPDYGVLAARIAISNMHKQTDDSFART--------MKELYAAGLI 114

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                 V  R             L   + +  DF + Y G++ L   Y +HI    +E P
Sbjct: 115 SMFHYDVVCR---------HGRTLDEAIVHANDFNYSYFGIKTLERSYLMHIKDRLVERP 165

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q   MR A+G+     E     +E YN +S  +F  +TPTLF++ T  PQLSSC+L T+ 
Sbjct: 166 QYLLMRCALGIHG---ENIDAVIETYNYMSRHYFTHATPTLFSAATPKPQLSSCYLLTIK 222

Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GIF  + + A ++K +GG+G +   +R  G+ I GTNGKS G++P L+V N+ A 
Sbjct: 223 GDSIDGIFRTVADCAAISKTAGGIGLNVHDIRARGSPIDGTNGKSNGLVPMLRVFNNVAR 282

Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QGG KR G+   YLE WH D+ EFLDLRKN G + +R  D+  A WIPDLFM+RV Q
Sbjct: 283 YVDQGGGKRMGSFAIYLEPWHADIFEFLDLRKNHGIEEQRARDLFYALWIPDLFMRRVEQ 342

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+L  P +   L +++G+ FE  YE+YER     + +  R + A ALW  ++    E
Sbjct: 343 DGDWSLMCPHKCPCLSEVWGESFEHLYEHYER-----KGRAVRTVKARALWHAIIESQVE 397

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----- 610
           TG P++ +KD CN +S QQ++G +  SNLCTEI   ++ +E AVCNL S+ L        
Sbjct: 398 TGTPYMMYKDACNRKSNQQNLGTIRCSNLCTEIVEYTAPDEIAVCNLASLALPKFVVSGT 457

Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 FD+++L   +    R L+ +IDIN + + +A++SN  HR IG+G+ G      L
Sbjct: 458 PDRPKHFDFEQLRRIVHVVTRNLNRIIDINYYPVPEARRSNLRHRPIGIGVQGLADTFVL 517

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + +PY S EA E+     E I F A+  S +LA+E G Y SF GS    G    D     
Sbjct: 518 MGMPYESDEARELNRRIFETIYFAALETSCQLAKEEGVYDSFLGSPASIGTLQQDMW--- 574

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                 + ++      WDEL+  ++  G+RNS  +A  PTA+ A I G ++S +P   N+
Sbjct: 575 -----PVDVDDKPMWNWDELRHNIEMNGLRNSLLVAPMPTASTAQILGNTESFEPITSNI 629

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YV+  +SG+F V+N  LV  L    LW E+M + +    GS+ +IE IP ++++++ T +
Sbjct: 630 YVRRVLSGEFQVINRHLVQHLIDLGLWSESMRNRIIARRGSVQDIEEIPIEVRRLYKTVW 689

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    +I+ A+ R ++IDQ+QSLN+++ EP+  KL  ++  AW  GLKT  YYLR+++A
Sbjct: 690 EISGRRIIDMAADRGRYIDQSQSLNMHVAEPNYAKLSSMHFYAWRAGLKTGMYYLRTKAA 749

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  + T+    G  ++   T             +CT   EC  C
Sbjct: 750 ANAIQFTVDSSSGVSSSASSTQD---------GPACTR--ECLSC 783


>gi|447146|prf||1913428A ribonucleotide reductase:SUBUNIT=large
          Length = 811

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/835 (34%), Positives = 445/835 (53%), Gaps = 52/835 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V    +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+  K P+YA + AR  +  L ++         +K     +Q L+     +  + 
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPKTDKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++      L + + Y+RDF + + G + L   Y L I+G   E PQ   M
Sbjct: 113 APMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     E  + A+E YNL+S  +F  ++PTLFN+GT  PQLSSCFL T+ DD + 
Sbjct: 173 RVAVGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  AM++K +G L  +   +R  G++I GTNG S G++P ++V N+TA  V+QG
Sbjct: 230 GIYDTLKMCAMISKTAGVLVFNIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA  AYLE WH DV +FL+LRK  G++  R   M  A WIPDLFM+RV +N  WT
Sbjct: 290 GNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            F P+E   L D++G EF   YE YE+     E +  R + A  +W  +L    ETG+P+
Sbjct: 350 FFCPNEAPGLADVWGDEFVALYEKYEK-----ENRGRRSLPAQKVWYAILQSQVETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S Q++VG + SSNLCTEI   SS +E AVCNL S+ L     + ++++ K
Sbjct: 405 MLYKDSCNRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++   R L+ +ID+N + + +A++SN  HR +GLG+ G   A   L +P+ S  A 
Sbjct: 465 LHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   A+ AS E+AQ  G Y S++GS   QG+   D             +N 
Sbjct: 525 KLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWN----------VNP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W E K+++   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 575 TDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN +L+ +L +RDLW+E M + L   DGSI  I  IP DLK ++ T +EI    +I+ A
Sbjct: 635 IVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYA 694

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QSLN++L +PS  K+  ++   W  GLKT  YYLR+ +A++  K T+  V
Sbjct: 695 ADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754

Query: 920 ---------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                  +++A P  +     +   +  S  +   CE+C
Sbjct: 755 ALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809


>gi|18266787|sp|O61065|RIR1_CRYPV RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|8365757|gb|AAC12280.2| ribonucleotide reductase R1 subunit [Cryptosporidium parvum]
 gi|32398776|emb|CAD98486.1| ribonucleoside-diphosphate reductase large chain [Cryptosporidium
           parvum]
          Length = 803

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/827 (33%), Positives = 442/827 (53%), Gaps = 44/827 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   + +   GL   V    V       +Y G+  S+L+    
Sbjct: 1   MYVVNRKGEEEPVSFDQILSRITKLSYGLHPLVDPARVTQAVINGLYSGIKTSELDELAS 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +     +++K+ AR     L +   + +     +  + +     P      I + 
Sbjct: 61  QTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYNFKDNQGCP---APLISKP 117

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           V   ++       +   + + + + +DF ++Y   + L   Y L I+   +E PQ   MR
Sbjct: 118 VYDFIM------ENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMR 171

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           V+ G+   + E    A+E Y LLS  +F  +TPTLFNSGT  PQ+SSCFL  +P D + G
Sbjct: 172 VSCGIHCGDIE---AALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSING 228

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L + A ++K +GGLG   + +RG G++I GTNG+S G+IP L+V NDTA  ++QGG
Sbjct: 229 IFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGG 288

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKGA+  YLE WH+DV EF+++RKN G +  R  D+  A W+PDLFM+RV ++  WTL
Sbjct: 289 GKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTL 348

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             PDE   L D++G +F+  YE YE+Q      +  + + A  LW  +L    ETG P+I
Sbjct: 349 MCPDECRGLQDVWGDDFKKLYEEYEKQ-----GRGRKTMKAQKLWFLILQAQIETGTPFI 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYD 619
            +KD  N +S Q+++G + SSNLCTEI   +S++E AVCNL SI L      N   FD+D
Sbjct: 404 CYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTFDFD 463

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R L+ +ID+  +++++ KKSN  HR +G+G+ G      +L +PY S  A
Sbjct: 464 KLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGA 523

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I + A+ AS ELA++ G Y ++ GS   +G+   D  G+  +        
Sbjct: 524 KKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD-------- 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    WD LK R+   G+RNS  ++  PTA+ + I G ++S +P   N+Y +  +SG+F
Sbjct: 576 -SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEF 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+++++ T +EI    +I+ 
Sbjct: 635 FVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  YYLR++SAT   + T+  
Sbjct: 695 AADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQ 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSS------------CTSDTECEVC 953
              K          ++      P +               D EC +C
Sbjct: 755 QLLKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801


>gi|66475480|ref|XP_627556.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
 gi|46229284|gb|EAK90133.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
          Length = 804

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/827 (33%), Positives = 442/827 (53%), Gaps = 44/827 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   + +   GL   V    V       +Y G+  S+L+    
Sbjct: 2   MYVVNRKGEEEPVSFDQILSRITKLSYGLHPLVDPARVTQAVINGLYSGIKTSELDELAS 61

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   +     +++K+ AR     L +   + +     +  + +     P      I + 
Sbjct: 62  QTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYNFKDNQGCP---APLISKP 118

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           V   ++       +   + + + + +DF ++Y   + L   Y L I+   +E PQ   MR
Sbjct: 119 VYDFIM------ENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMR 172

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           V+ G+   + E    A+E Y LLS  +F  +TPTLFNSGT  PQ+SSCFL  +P D + G
Sbjct: 173 VSCGIHCGDIE---AALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSING 229

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L + A ++K +GGLG   + +RG G++I GTNG+S G+IP L+V NDTA  ++QGG
Sbjct: 230 IFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGG 289

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKGA+  YLE WH+DV EF+++RKN G +  R  D+  A W+PDLFM+RV ++  WTL
Sbjct: 290 GKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTL 349

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             PDE   L D++G +F+  YE YE+Q      +  + + A  LW  +L    ETG P+I
Sbjct: 350 MCPDECRGLQDVWGDDFKKLYEEYEKQ-----GRGRKTMKAQKLWFLILQAQIETGTPFI 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYD 619
            +KD  N +S Q+++G + SSNLCTEI   +S++E AVCNL SI L      N   FD+D
Sbjct: 405 CYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTFDFD 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R L+ +ID+  +++++ KKSN  HR +G+G+ G      +L +PY S  A
Sbjct: 465 KLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E I + A+ AS ELA++ G Y ++ GS   +G+   D  G+  +        
Sbjct: 525 KKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD-------- 576

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    WD LK R+   G+RNS  ++  PTA+ + I G ++S +P   N+Y +  +SG+F
Sbjct: 577 -SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEF 635

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+++++ T +EI    +I+ 
Sbjct: 636 FVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDM 695

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  YYLR++SAT   + T+  
Sbjct: 696 AADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQ 755

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSS------------CTSDTECEVC 953
              K          ++      P +               D EC +C
Sbjct: 756 QLLKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 802


>gi|326502586|dbj|BAJ95356.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 812

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/836 (33%), Positives = 441/836 (52%), Gaps = 53/836 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKKLAYGLSQDHCDPVLVAQKVCAGVYRGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  + +  +          + +Y  +  R    
Sbjct: 61  AETAAAMTASHPDYASLAARIAVSNLHKNTMKSFSETV--------KVMYTHFNERSGLM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF +++ G + L   Y L + G  +E PQ   M
Sbjct: 113 APLIADDVYEIIMKNATRLDSEIIYDRDFDYDFFGFKTLERSYLLKVGGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +  + AV+ Y+++S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KDDIESAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L E A ++K +GG+G     VR  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLSECASISKSAGGIGVSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV +N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIYEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQKNEQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G EF+  Y  YER     E K  + +SA +LW ++L    ETG P+
Sbjct: 350 LFCPSEAPGLADCWGDEFQNLYNKYER-----EGKAKKIVSAQSLWFEILKAQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + +KD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKSSNLCTEIVEFTSPTETAVCNLASIALPRFVREKGVPIES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA         L+ +IDIN + IE A++SN  HR IG+G+
Sbjct: 465 HPAKLVGSIGSKNRYFDFDKLAEITSVVTWNLNKIIDINYYPIETARRSNMRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL +P+ SPEA ++  +  E I +HA+ AS E+A + G Y ++ G    +G+
Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYDGCPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D   ++   R            W  ++  +  +G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWNVVPSDR----------WDWPAIRGMISKVGLRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  +W   + +++ Y DGS+  I  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNNIIYDDGSVQKITEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    +++ A  R  +IDQ+QSLN+++D+ +  KL  ++   W  GLKT 
Sbjct: 695 LKAIYKTVWEIKQKTVVDMAVDRGCYIDQSQSLNIHMDQANSGKLTSLHFHTWSKGLKTG 754

Query: 900 TYYLRSRSATSVEKSTLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLR+R+A    K T+       K  A    + +       +  S  +  +C  C
Sbjct: 755 MYYLRTRAAADAIKFTVDTSLLKDKKPANAEEEEDLEAKMAQVTCSLNNREDCLAC 810


>gi|294871762|ref|XP_002766029.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239866594|gb|EEQ98746.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1504

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/791 (33%), Positives = 433/791 (54%), Gaps = 35/791 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G        ++   +     GL +  V    +  +  + +Y G++ ++L++ 
Sbjct: 2   VMYVIKRNGQKADVQFDKITKRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   + +  P+++ + AR  +  L +    +  +   +  +                
Sbjct: 62  AAETCAYMSQVHPDFSTLAARIAVSNLHKNTHESFSETITELYNITDSRG---------R 112

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319
                     +++  +   L   + Y+RDF ++Y G + L   Y L    + + IE PQ 
Sbjct: 113 SSPLVSEEVYNIVKMNADKLDKAIDYDRDFDYDYFGFKTLERSYLLKRPSDKTCIERPQH 172

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   +      A+E Y L+S+  F  +TPTLFNSGT HPQ+SSCFL ++  D
Sbjct: 173 MIMRVAVGIHGDD---VDAAIETYALMSTRVFTHATPTLFNSGTPHPQMSSCFLLSIKED 229

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ AM++K +GG+G   T +R   ++I GTNG S G++P L+V NDTA  V
Sbjct: 230 SIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTARYV 289

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH DV EFLDL+KN G +  R  D+  A WIPDLFMKRV  N 
Sbjct: 290 DQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANG 349

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D YG+EFE  YE YE+     +    + + A +LW K+L    ETG
Sbjct: 350 DWTLFCPNEAPGLQDTYGEEFEALYEKYEK-----DGIGRKTVKAQSLWFKILESQQETG 404

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615
            P++ +KD  N +S Q+++G +  SNLC EI   +SS+E AVCNL SI  N+        
Sbjct: 405 IPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSSDEVAVCNLASIALNMFVDKKTRT 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+D+L    +   + L+ VID N + + +A+KSN  HR IG+G+ G   A  L+  PY 
Sbjct: 465 YDFDRLHRVAKVVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRYPYE 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA+++ ++  E I   A  AS+ELA+  G Y +F+GS   +G+   D   ++ +    
Sbjct: 525 SPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVIPD---- 580

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                + R  W  LK+ +K  GMRNS  +A  PTA+ A I G +++ +P  QN+YV+  +
Sbjct: 581 -----SGRWDWASLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRVL 635

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F  VN  LV++L +  LW++ +   +    GS+  +E IP +++ ++ T +EI    
Sbjct: 636 AGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPSEIQDLYKTVWEIKQKK 695

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++   +  KL  ++   W +GLKT  YYLR+++A    + 
Sbjct: 696 ILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQF 755

Query: 915 TLKGVDGKLNA 925
           TL      + +
Sbjct: 756 TLDAKKVTVES 766


>gi|71422050|ref|XP_812008.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70876737|gb|EAN90157.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 796

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/825 (34%), Positives = 433/825 (52%), Gaps = 44/825 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           +A  L +   DG+L SF++ +L   +E    GL    V  KI+       ++D +S  +L
Sbjct: 2   LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +  ++   + K P+Y  +  R  +  L +    +V +            L+      
Sbjct: 62  DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLET--------FSILHKHKIHD 113

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-----FLHINGSR 313
                         ++      L   + Y+RD  FE+ G + L   Y             
Sbjct: 114 TGRAAPLLSDEVWEVVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGEREI 173

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E PQ  F+RVA+G+  ++ E+     E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL
Sbjct: 174 AERPQQMFLRVALGIHGEDMERV---KETYDHMSLGDFTHATPTLFNAGTPFPQMSSCFL 230

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+  L++ A+++K +GG+G     +R  G++I GTNG+S G++P L+V N
Sbjct: 231 VAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLRVWN 290

Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG +  R  D+  A WIPDLFM+
Sbjct: 291 NTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFME 350

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV     WTL  P     L D YG +F+  YE YER     E +  + + A +LW  +L 
Sbjct: 351 RVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYER-----ENRGVKTVQAQSLWFAILE 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH- 610
              ETG P++ +KD CN +S Q++VGV+  SNLCTEI   +S +E AVCNL SI L    
Sbjct: 406 SQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFV 465

Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ +L    +   + L+ VID N + + ++++SN  +R IG+G+ G      L
Sbjct: 466 DKERRIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + +P+   EA  + ++  E I + A+ ASVELA+  G Y+ F GS   QG    D     
Sbjct: 526 MRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQK 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                     R+ R  WD LKKR+   GMRNS  +A  PTA+ + I G ++  +P   N+
Sbjct: 586 P---------RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YV+  +SG+F VVN +LV +L +R LW+E M + +  ++GS+ NI  IP+DLK+++   +
Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    LIE A  R K+IDQ+QSLNL+L+ P+  +L  ++  AW  GLKT  YYLRS+ A
Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPA 756

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K T+     K                 + S+  S+ +C  C
Sbjct: 757 ADAIKFTVDPNTLK-------GLVKEDDRKQVSSATPSNEDCLNC 794


>gi|294941788|ref|XP_002783240.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239895655|gb|EER15036.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/819 (32%), Positives = 434/819 (52%), Gaps = 39/819 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  +G        ++   +     GL +  V    +  +  + +Y G++ ++L++ 
Sbjct: 2   VMYVIKRNGQKADVQFDKITKRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   + +  P+++ + AR  +  L +    +  +   +  +                
Sbjct: 62  AAETCAYMSQVHPDFSTLAARIAVSNLHKNTHESFSETVTELYNITDSRG---------R 112

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319
                     +++  +   L   + Y+RDF ++Y G + L   Y L    + + IE PQ 
Sbjct: 113 SSPLVSEEVYNLVLMNADKLDKAIDYDRDFDYDYFGFKTLERSYLLKRPSDKTCIERPQH 172

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378
             MRVA+G+   +      A+E Y L+S+  F  +TPTLFNSGT HPQ+SSCFL ++  D
Sbjct: 173 MIMRVAVGIHGDD---VDAAIETYALMSTRVFTHATPTLFNSGTPHPQMSSCFLLSIKED 229

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ AM++K +GG+G   T +R   ++I GTNG S G++P L+V NDTA  V
Sbjct: 230 SIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTARYV 289

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKG+   YLE WH DV EFLDL+KN G +  R  D+  A WIPDLFMKRV  N 
Sbjct: 290 DQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANG 349

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTLF P+E   L D YG EFE  YE YE+     +    + + A +LW K+L    ETG
Sbjct: 350 DWTLFCPNEAPGLQDTYGDEFEALYEKYEK-----DGIGRKTVKAQSLWFKILESQQETG 404

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615
            P++ +KD  N +S Q+++G +  SNLC EI   +S +E AVCNL SI  N+        
Sbjct: 405 IPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKKTRT 464

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           +D+ +L    +   + L+ VID N + + +A+KSN  HR IG+G+ G   A  L+  PY 
Sbjct: 465 YDFGRLHRVAKVVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRFPYE 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA+++ ++  E I   A  AS+ELA+  G Y +F+GS   +G+   D   +  +    
Sbjct: 525 SPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVTPD---- 580

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                + R  W  LK+ VK  GMRNS  +A  PTA+ A I G +++ +P  QN+YV+  +
Sbjct: 581 -----SGRWDWASLKEEVKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRVL 635

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F  VN  LV++L +  LW++ +   +    GS+  +E IP +++ ++ T +EI    
Sbjct: 636 AGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPMEIQALYRTVWEIKQKK 695

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  +IDQ+QSLN+++   +  KL  ++   W +GLKT  YYLR+++A    + 
Sbjct: 696 ILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQF 755

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           TL      +     +     +  L        +  C  C
Sbjct: 756 TLDAKKVTVE----SPLKPRSSPLKPQYVQEDEETCIAC 790


>gi|328875304|gb|EGG23669.1| ribonucleotide reductase large subunit [Dictyostelium fasciculatum]
          Length = 942

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/834 (31%), Positives = 430/834 (51%), Gaps = 63/834 (7%)

Query: 123 EERSDVRAAQSHSKSDAPIAP------KLKIMMDDGTLI------------------SFN 158
            + +     +S        +       K+ ++  DGT +                     
Sbjct: 46  AQHTSNDEQKSQKNVVDSKSEITNTPGKMFVVKRDGTRVAVCNRPTSTQLYFYKKEIDVK 105

Query: 159 SKRLEMIVEEACS-----GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
             ++   ++  C          +    +  +    ++ G+  ++L+     ++  +  K 
Sbjct: 106 YDKITTRLQYLCDLEPKLDTNIIDPSEITQKVASGVFPGVKTTELDNLAAETAAYMSTKH 165

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P+YA + AR  +  L ++   +  +  +          +     +             ++
Sbjct: 166 PDYAVLAARIAVSNLHKQTHESFLETVKL--------QHGYVSPKTGAPAPLVSDEILAL 217

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333
            +  +  +   +KY RDF +++ G + L   Y   +N   IE PQ   MRV++G+   + 
Sbjct: 218 ANKHVDRIEAAIKYTRDFEYDFFGFKTLERSYLHRVNDMIIERPQHLLMRVSLGIHGDD- 276

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAM 392
                A++ Y+ LS+ +F  +TPTLFN+GT  PQ+SSCFL  + DD + GI+  L++ A+
Sbjct: 277 --IDAAIDTYDQLSNRYFTHATPTLFNAGTNSPQMSSCFLVQMKDDSIEGIYDTLKQCAL 334

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAY 451
           ++K +GG+G     +R   ++I GTNG S G++P L+V NDTA  V+QGG KRKGA   Y
Sbjct: 335 ISKSAGGIGIAVHKIRAARSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVY 394

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LE WH D+ EFLDL+KN G +  R  D+  A W+ DLFM+RV QNA W+LF P+E   L 
Sbjct: 395 LEPWHSDIFEFLDLKKNHGKEEMRARDLFYALWVSDLFMERVEQNAEWSLFCPNEAPGLA 454

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           D YG +F   Y +YE+          + + A  LW  ++    ETG P+I +KD CN +S
Sbjct: 455 DCYGDKFRDLYLSYEQ----TPGLARKVVKAQDLWFAIIDSQIETGTPYILYKDACNEKS 510

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTI 625
            Q+++G +  SNLCTEI   +S++E AVCNL SI L      +       FD++ LA   
Sbjct: 511 NQKNLGTIQCSNLCTEIIQYTSADEVAVCNLASIALPKFVKRSSPSAVASFDHNHLAEIT 570

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R   R L+ +ID N + +E+A++SN  HR  G+G+ G       L +P+ SP A  +  E
Sbjct: 571 RIITRNLNKIIDRNFYPVEEARRSNMRHRPTGIGIQGLADVFIALRMPFDSPAAAVLNKE 630

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I + ++ AS +LA+  G Y +F GS   QG+   D             +  ++R  
Sbjct: 631 IAETIYYASLDASCQLAERDGPYETFAGSPASQGILQFDMW----------DVQPSARWD 680

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK+R+   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+FTVVN  
Sbjct: 681 WAALKQRIVKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRKVLAGEFTVVNKQ 740

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ +L    LW   M + +  + GS+ N++ IPDDLK+++ +A+EI    LI+ A+ R  
Sbjct: 741 LLQDLMALGLWTPEMKNQIIANRGSVQNVQGIPDDLKELYKSAWEIRQRTLIDMAADRGA 800

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           +IDQ+QS N+++ EP+  KL  ++  AW  GLKT  YYLR+R+A    + T+  
Sbjct: 801 FIDQSQSFNVFIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTRAAADAIQFTVDQ 854


>gi|307180389|gb|EFN68415.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 889

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/823 (33%), Positives = 440/823 (53%), Gaps = 35/823 (4%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMY 190
           S          K+ ++  +G     +  ++   + + C  L    V    V  +  + +Y
Sbjct: 20  SKMPVKEIGRGKMHVIKRNGRKEDVHFDKITSRIAKQCYNLDMNYVDPSAVAIQVIRGLY 79

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            G++   L+     ++ T+    P+YA + AR  +  L +E      K         M  
Sbjct: 80  SGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKETKKNFSKV--------MHD 131

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
           LY        +        + +++  +   L + + Y+RDF++ Y+G + L   Y L IN
Sbjct: 132 LYHARDSVTNQHTPIINERYYNIIKNNAEKLDSAIIYDRDFSYNYIGFKTLERSYLLKIN 191

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G  +E PQ   MRVA+G+         +A+E YN LS  +F  ++PTLFN+ T + Q+SS
Sbjct: 192 GKIVERPQHMLMRVAVGIH---ETDIDKAIETYNYLSERYFTHASPTLFNACTNNQQMSS 248

Query: 371 CFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL T+  D + GIFG L++ A+++KY+GG+G +   +R      +     + G++  LK
Sbjct: 249 CFLLTLDNDSIKGIFGTLKKCALISKYAGGIGLNVHCIRAKSTEDNTD--TTNGLVSVLK 306

Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           + ND A+ V+QG  KR GA   YLE WH D+ +FL+LR+N GD   R  D+    WIPDL
Sbjct: 307 LYNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELRRNIGDGNMRARDLFYGLWIPDL 366

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV  N  W+L  P E   L D++G EF+  Y  YE+     E +  +++ A A+W  
Sbjct: 367 FMERVYNNENWSLMCPHESPGLADVWGDEFKELYIRYEK-----EGRYKKQVEARAVWVA 421

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--N 606
           +L    ETG P++ +KD CN +S  QH+G +  SNLCTE+   S   E AVCNL SI  N
Sbjct: 422 ILRSQVETGTPYMLYKDHCNRKSNHQHIGTIKCSNLCTEVIQYSGPGEVAVCNLASIAVN 481

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +  +  N  FD+DKL +  +   R LD VID+N + I + K SN  HR IG+G+ G   A
Sbjct: 482 MFVNTNNKTFDFDKLKTIAKVVTRNLDKVIDVNFYPIVETKTSNQKHRPIGIGIQGLADA 541

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
             L+  P+ S EA E+  +  E + + A+ AS +LA E+G Y +++GS   +G+   D  
Sbjct: 542 FLLMRYPFESKEAKELNIKIFETLYYGALEASCKLAAEKGTYETYEGSPVSKGILQYDMW 601

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                      +  T+   WD+LK+++   G+RNS  +A  PTA+ A I G ++SI+P  
Sbjct: 602 N----------VKPTNLWDWDKLKEKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYT 651

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N+YV+  +SG+F +VN  L+ +L  R LWDE M +++    GS+ NI+RIPDDLK ++ 
Sbjct: 652 SNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEILASFGSVQNIDRIPDDLKVLYK 711

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           T +EI    ++E A+ R  +IDQ+QSLN+++ +P+ +KL  ++   W  GLKT  YYLR+
Sbjct: 712 TVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEKLTSMHFFGWRSGLKTGMYYLRT 771

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           + A +  + T+     + N    +    +   +  P+    + 
Sbjct: 772 KPAANPIQFTVDKSKLRNNDSISSASTVNNTPIQSPNKDDDND 814


>gi|254521985|ref|ZP_05134040.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
 gi|219719576|gb|EED38101.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
          Length = 800

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/841 (38%), Positives = 468/841 (55%), Gaps = 53/841 (6%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
           E  + +        +  P A  + +   +GT    +  ++   V+ +  GL  V    V 
Sbjct: 4   ESSATIEKESEFLLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVA 63

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           + T   +Y+G +  +L+   I ++  LI +EP Y ++ AR L   + +EV          
Sbjct: 64  TRTISGLYNGATTRELDELSIRTAALLIGEEPEYGRLAARLLANYIAKEVSGQEI----- 118

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQ 299
                        F + +  G +  L+++ +++F   +   L + +    D  F+Y GL+
Sbjct: 119 -----------YAFSQSVSRGHEVGLINDRLLNFVQTNARKLNDAIDGALDLNFDYFGLR 167

Query: 300 ILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
            LYDRY L        IE PQ FF+R+A  L+    E     +  Y  + +  ++ S+PT
Sbjct: 168 TLYDRYLLRHPHTRKVIETPQQFFLRIASALS----EDVSETLALYKRMGNLDYLPSSPT 223

Query: 358 LFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           LFNSGT H QLSSCFL     D L  I+    + A L+K+SGG+G  +T VR  G+ I  
Sbjct: 224 LFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKS 283

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           TNG S G++P+LK  + +  AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR 
Sbjct: 284 TNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDEARRA 343

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           H++N ANW+PDLFMKRV  +  W+LF P  V +  DL+G+ FE AY   E Q      K 
Sbjct: 344 HNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQ-----GKA 398

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSS 594
            R ISA  L+ +M+  L ETG+ W+TFKD CN  S Q  +   V+H SNLCTEI   +S+
Sbjct: 399 NRTISARKLYARMMRTLAETGNGWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSN 458

Query: 595 EETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +ETAVCNLGSINL  HF  +  FD++KLA T+R AVR LD VID+N + IE A+++N   
Sbjct: 459 DETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRW 518

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG MG Q       +P+ S EA  ++ +  E I FHA+  S ELAQERG + SF  
Sbjct: 519 RPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFND 578

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           +    G    D+  ++ E              WD L++R+K  G+RNS  +AIAPTATIA
Sbjct: 579 TRAASGELQFDAWNVVPEDTAR----------WDALRERIKEHGLRNSLMIAIAPTATIA 628

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           +I G  + ++P   NL+ +  +SGDF  VN +LVNELK+  LW   M   +K  +GSI  
Sbjct: 629 SIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAG 688

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           + +IP+ L++++ TA+E+    LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW
Sbjct: 689 VAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAW 748

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             G+KTTYYLRSR AT + K+T+                  +    I  S  +   CE C
Sbjct: 749 KQGIKTTYYLRSRPATKIAKTTVS---------TAAPAKVFSPDEAIACSLENPEACEAC 799

Query: 954 Q 954
           Q
Sbjct: 800 Q 800



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 5  KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
             +    +         P     + V KRNG     D +KI RA+ +   + EG  A  
Sbjct: 2  STESSATIEKESEFLLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQR---SSEGLHAVD 58

Query: 65 SIRV 68
           +RV
Sbjct: 59 PMRV 62


>gi|297797920|ref|XP_002866844.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312680|gb|EFH43103.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 807

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/803 (34%), Positives = 433/803 (53%), Gaps = 57/803 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGKQETVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +    +  +  +    H                
Sbjct: 61  AETAAAMTANHPDYASLAARIAVSNLHKNTKKSFSETVRDMYSH-----------VNERS 109

Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           G+ + L+   + +        L +++ Y+RDF ++Y G + L   Y L + G  +E PQ 
Sbjct: 110 GLASPLIAADVYEIIMKHATRLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGKVVERPQH 169

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
             MRV++G+     E    A++ Y+L+S   F  ++PTLFNSGT   QLSSCFL  + DD
Sbjct: 170 MLMRVSVGIH---KEDIDSAIKTYHLMSQRWFTHASPTLFNSGTPRAQLSSCFLICMKDD 226

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V
Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIRGTNGASNGIVPMLRVFNDTARYV 286

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+ +FL+LRKN G +  R  D+    WIPDLFM+RV  + 
Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFDFLELRKNHGKEEHRARDLFYGLWIPDLFMERVQTDG 346

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P+E   L D +G EFE  Y  YE Q      K  + + A  LW ++LT   ETG
Sbjct: 347 QWSLFCPNEAPGLADCWGAEFERLYTQYENQ-----GKAKKVVQAQQLWYEILTSQVETG 401

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
            P++ FKD CN +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L          
Sbjct: 402 TPYMLFKDSCNSKSNQQNLGTIKSSNLCTEILEYTSPTETAVCNLASIALPRFVRENDIP 461

Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
                          N  FD+DKLA    T    L+ +ID+N + +E AK SN  HR IG
Sbjct: 462 LDSHPSKIVGSLDSKNRYFDFDKLAEVTATVTVNLNKIIDVNHYPVETAKTSNMRHRPIG 521

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G   A  LL +P+ SPE+ ++  +  E I +HA+ +S E+A + G Y +++GS   
Sbjct: 522 IGVQGLADAFILLGMPFDSPESQQLNKDIFETIYYHALKSSSEIATKEGTYETYQGSPVS 581

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D   ++   R            W  L+  +   G+RNS  +A  PTA+ + I G
Sbjct: 582 KGILQPDMWNVIPSDR----------WDWAALRDMISKNGIRNSLLVAPMPTASTSQILG 631

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + + + +GSI N++ I
Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWSPTLKNKIIHENGSIVNVKEI 691

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           PDDLK I+ T +EI    +++ A+ R  +IDQ+QSLN+++++P+  KL  ++  AW  GL
Sbjct: 692 PDDLKAIYRTVWEIKQRTVVDMAADRGCFIDQSQSLNIHMEKPNFAKLTSLHFYAWKKGL 751

Query: 898 KT-TYYLRSRSATSVEKSTLKGV 919
           KT  YYLRSRSA    K T+   
Sbjct: 752 KTGMYYLRSRSAADAIKFTVDTA 774


>gi|313117006|ref|YP_004038130.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312294958|gb|ADQ68994.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 845

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/846 (45%), Positives = 534/846 (63%), Gaps = 47/846 (5%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIV----LSETYKNMYDGLSESDLETALIFSSRT 208
           +  +  +  +  I+ +A +G +DV +  V    ++ET +N+YDG S  ++  AL   +  
Sbjct: 3   STQTTQTNDVRTILNQARTGYEDVLTDEVMDRLVTETERNLYDGASIDEVYEALEGVTTA 62

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            IE++P Y  V A     +  R V     ++  +    +    Y E F   +E GV   L
Sbjct: 63  RIERDPAYKYVAADIHRRRYFRRVTG---EQLSETADDDTATTYRETFAANLERGVDEDL 119

Query: 269 LHESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRV 324
           L E ++D  FD+  LA+ L  ERD  F+Y+ +  L  RYF+     G  +E+PQAF+MRV
Sbjct: 120 LDERLLDGRFDIDELADALVLERDDKFDYIAMSTLTQRYFIKTEVDGDPLELPQAFWMRV 179

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLA++E + + RA+EFY++LS   F  STPTLF+SGT HPQLSSC+LTTV DDL  IF
Sbjct: 180 AMGLAIEEDDPQARALEFYDVLSRLLFTPSTPTLFHSGTTHPQLSSCYLTTVEDDLEHIF 239

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            + + +A L+K+SGGLGNDWT +R  GA I  T  +S G +PFLK++ND   A+N+ GKR
Sbjct: 240 DSYKHHAQLSKWSGGLGNDWTNLRAEGALIESTGVESTGTVPFLKISNDVTAAINRSGKR 299

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA C YLE WH+D   FLDLR+NTGD+RRRTHDMNTA W+PDLFM+RV  +  WTLFSP
Sbjct: 300 RGAACGYLEAWHMDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMERVENDETWTLFSP 359

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DEV +LH+ YG+EF   Y  YE +A+ GE++ +  + A  LWR MLT LFETGHPWITFK
Sbjct: 360 DEVPELHETYGEEFAELYREYEEKAEAGELRQYETVDAADLWRTMLTRLFETGHPWITFK 419

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           DPCN+RSPQ HVG VHSSNLCTEITLN+S+EE AVCNLGS+NL  H A+++ D + LA T
Sbjct: 420 DPCNVRSPQDHVGTVHSSNLCTEITLNTSAEEHAVCNLGSVNLSNHVADSELDREALADT 479

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I TA R+LDNV+D+  +  ++A+ SN  HR +GLG+MGF  AL  +    AS EAVE A+
Sbjct: 480 IETATRMLDNVVDLCFYPTDEAEYSNMRHRPVGLGVMGFHDALMQVGTSMASEEAVEAAN 539

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSR 743
              EF+S+H I  S  LA+ERGAY +F+GS WD+G+ P D++  L   R  E+  +R+  
Sbjct: 540 RWQEFVSYHTILNSSRLAKERGAYETFEGSKWDRGILPHDTVDRLEAERGREIPTDRSET 599

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           + WD ++  +   GMRNSN MAIAPTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N
Sbjct: 600 MDWDRVRDHIAEHGMRNSNTMAIAPTATISTINGTTPSIEPIYSNLYVKSNMSGDFTVIN 659

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             LV++LK   LWD+ M+  +K+ DGSI  +  IP+++++++ +AFEIDP   +   + R
Sbjct: 660 EQLVDDLKAEGLWDDEMVDQIKFFDGSIQEVSAIPEEMRELYRSAFEIDPRHQLRLTAHR 719

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK------ 917
            +WIDQ+ S N++     G  LD +Y+ AW +G+KTTYYLR+  A+ +EKSTL       
Sbjct: 720 GQWIDQSISHNVFFPSTDGSLLDDVYKTAWRLGVKTTYYLRTLGASQIEKSTLDMAEYGR 779

Query: 918 -----------------------------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                                           G+ +       + +  +     +   D 
Sbjct: 780 TQRRNESEATADRDSNDNGGNVTAADGDTDDSGEGDRDAAAGGDKTGEACDTSLARVEDP 839

Query: 949 ECEVCQ 954
            C+ CQ
Sbjct: 840 TCDACQ 845


>gi|190572322|ref|YP_001970167.1| putative ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
 gi|190010244|emb|CAQ43852.1| putative ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
          Length = 775

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/819 (39%), Positives = 461/819 (56%), Gaps = 53/819 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +GT    +  ++   V+ +  GL  V    V + T   +Y+G +  +L+   I 
Sbjct: 1   MSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELDELSIR 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y ++ AR L   + +EV                       F + +  G 
Sbjct: 61  TAALLIGEEPEYGRLAARLLANYIAKEVSGQEI----------------YAFSQSVSRGH 104

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319
           +  L+++ +++F   +   L + +    D  F+Y GL+ LYDRY L        IE PQ 
Sbjct: 105 EVGLINDRLLNFVQTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQ 164

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPD 378
           FF+R+A  L+    E     +  Y  + +  ++ S+PTLFNSGT H QLSSCFL     D
Sbjct: 165 FFLRIASALS----EDVSETLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQD 220

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I+    + A L+K+SGG+G  +T VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 221 SLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAV 280

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RR H++N ANW+PDLFMKRV  +  
Sbjct: 281 NQGGKRKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQE 340

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V +  DL+G+ FE AY   E Q      K  R ISA  L+ +M+  L ETG+
Sbjct: 341 WSLFDPRVVPEFTDLFGEAFEAAYLQAEAQ-----GKANRTISARKLYARMMRTLAETGN 395

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615
            W+TFKD CN  S Q  +   V+H SNLCTEI   +S++ETAVCNLGSINL  HF  +  
Sbjct: 396 GWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE 455

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD++KLA T+R AVR LD VID+N + IE A+++N   R +GLG MG Q       +P+ 
Sbjct: 456 FDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFD 515

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  ++ +  E I FHA+  S ELAQERG + SF  +    G    D+  ++ E    
Sbjct: 516 SAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPEDTAR 575

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L+ R+K  G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  +
Sbjct: 576 ----------WDALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETL 625

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF  VN +LVNELK+  LW   M   +K  +GSI  + +IP+ L++++ TA+E+    
Sbjct: 626 SGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRS 685

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+ SLNL+++ P+   +  +Y  AW  G+KTTYYLRSR AT + K+T
Sbjct: 686 LIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 745

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                  +    I  S  +   CE CQ
Sbjct: 746 VS---------AAAPAKVFSPDEAIACSLENPEACEACQ 775


>gi|330805291|ref|XP_003290618.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
 gi|325079257|gb|EGC32866.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
          Length = 855

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/823 (31%), Positives = 419/823 (50%), Gaps = 44/823 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYKNMYDGLSES 196
             K+ ++  DG   +    ++   +   C        + V    V  +    ++ G+  +
Sbjct: 13  DSKMYVIKRDGQKQNVTFDKITSRIRFLCEMEPRLNEEIVDPAEVAQKVISGVFPGVKTT 72

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+     ++  +  + P+Y  + AR  +  L ++  T++ +          +  Y    
Sbjct: 73  ELDNLAAETAAYMSTRHPDYGVLAARISVSNLHKQTSTSLVETV--------KIQYEYIN 124

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
            +              +++     L   + Y+RDF +++ G + L   Y   IN S +E 
Sbjct: 125 SKTNLPAPLVSKELYDIVNEHAERLEKAIDYQRDFDYDFFGFKTLERSYLHRINNSIVER 184

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ   MRV++G+   + +    A+  Y  LS   F  +TPTLFN+GT +PQ+SSCFL  +
Sbjct: 185 PQHMLMRVSIGIHGNDIDN---AILTYEKLSQKLFTHATPTLFNAGTPYPQMSSCFLVQM 241

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++P L+V NDTA
Sbjct: 242 KEDSIDGIYDTLKQCALISKSAGGIGIACHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTA 301

Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QGG KRKGA   YLE WH D+ EF++L+KN G +  R  D+  A W+ DLFM+RV 
Sbjct: 302 RYVDQGGGKRKGAFAVYLEPWHSDIFEFIELKKNHGKEEMRARDLFYALWVSDLFMERVE 361

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           QN  W+LF P+E   L + + +E    Y  YE           R I A  LW  ++    
Sbjct: 362 QNGDWSLFCPNEAPRLDETHSEEHRELYLKYE----NTPGLARRVIKAQELWFAIMESQV 417

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
           ETG P+I +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SI L       
Sbjct: 418 ETGTPFILYKDSCNSKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFIRRK 477

Query: 611 -----FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                    +FD+ KL    +   + L+ +ID N + +++AK SN  HR IG+G+ G   
Sbjct: 478 EGSTNPKEKEFDHQKLYEITKIVTKNLNKIIDRNYYPVQEAKTSNLRHRPIGIGIQGLAD 537

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               L +P+    A ++  E  E I F A++AS EL+   G Y +FKGS   QG+   D 
Sbjct: 538 VFIQLRMPFDGTAAAKLNIEIAETIYFAALTASHELSLIEGPYETFKGSPASQGILQYDF 597

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             +    R            W +LK ++    G+RNS  +A  PTA+ + I G ++  +P
Sbjct: 598 WNVTPTNR----------WNWTDLKDKIVNKGGLRNSLLIAPMPTASTSQILGNNECFEP 647

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  ++G+FT+VN  L+ +L +  +W   + + +  + GSI +I  IPDDLK++
Sbjct: 648 YTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPELKNQIVLNRGSIQSIPSIPDDLKEL 707

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  +W  GLKT  YYL
Sbjct: 708 YKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYL 767

Query: 904 RSRSATSVEKSTLKGV-DGKLNAVPVTDPNSSTHSLGIPSSCT 945
           R+R A    + T+          V        T +   PSS  
Sbjct: 768 RTRPAADAIQFTVDPTVQQTPKPVEKDQTPLKTPTNKTPSSLN 810


>gi|237841871|ref|XP_002370233.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|211967897|gb|EEB03093.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|221482702|gb|EEE21040.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii GT1]
 gi|221503104|gb|EEE28810.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii VEG]
          Length = 877

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/842 (34%), Positives = 439/842 (52%), Gaps = 59/842 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   +E+   GL   V    V       MY G+  S+L+    
Sbjct: 60  MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 119

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +S  +    P+++++ AR  ++ L +           +            Y  +   E 
Sbjct: 120 QTSAYMAASHPDFSRLAARIAIDNLHKNTTDNFLTVIDQL---------HGYVDKLGREA 170

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                     +  +   L   L Y RDF ++Y G + L   Y L I+   +E PQ   MR
Sbjct: 171 KLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMR 230

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           VA G+   +    ++A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D + G
Sbjct: 231 VACGIHCGD---VEKAIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDG 287

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L++ A+++K +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+QGG
Sbjct: 288 IFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGG 347

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG++  YLE WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAGWTL
Sbjct: 348 GKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTL 407

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L +++G EF+  YE YER     E +  + I A  LW  +L    ETG P++
Sbjct: 408 MCPNECPGLTEVWGDEFKELYERYER-----EGRGRKTIPAQHLWFAILQAQIETGTPYM 462

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
            +KD CN +S Q+++G +  SNLCTE+   +S +E AVCNL S++L       +  FDY+
Sbjct: 463 LYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTFDYE 522

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   ++   R L+ VID N + + +AKKSN  HR +GLG+ G   A  LL  P+ SPEA
Sbjct: 523 HLKRIVKVMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEA 582

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +     E I F A+ AS ELA E G Y++++GS   QG+   D  G+           
Sbjct: 583 RVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTP--------- 633

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    WD L++++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +SG+F
Sbjct: 634 SSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEF 693

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +RDLW E +   L  H+GS+ N++ IPDDLK ++ T +EI    +++ 
Sbjct: 694 FVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDL 753

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A  R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T+  
Sbjct: 754 AIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDS 813

Query: 919 --------------------VDGKLNAVPVTDPNSSTHSLGIPSSC-------TSDTECE 951
                                    +     D   +     +   C       + D  CE
Sbjct: 814 QLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCRWRRTGASPDEPCE 873

Query: 952 VC 953
           +C
Sbjct: 874 MC 875


>gi|162452148|ref|YP_001614515.1| ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
 gi|161162730|emb|CAN94035.1| Ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
          Length = 838

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/840 (38%), Positives = 473/840 (56%), Gaps = 56/840 (6%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
             + P    +++   +G+    +  ++   V  +C+ L DV +  V ++T   +YDG + 
Sbjct: 34  AEETPPHTTMRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDALRVATKTISGLYDGATT 93

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +L+   I ++ +LI  EP YAK+ AR L   + +EV                       
Sbjct: 94  RELDQLSIQTAASLIADEPQYAKLAARLLATYIDKEVRNQEI----------------HA 137

Query: 256 FCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           F + +  G +  L+++ +  F   +   L + ++  RD   EY GL+ LYDRY L    +
Sbjct: 138 FSQSVAVGRRLGLINDRLHGFVAQNARKLNDAIEPARDHELEYFGLRTLYDRYLLKHPET 197

Query: 313 R--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           R  IE PQ FF+R+A  L+    +    AVE Y L SS  ++ S+PT+FNSGT H QLSS
Sbjct: 198 RLVIETPQQFFLRIACALSETAAQ----AVELYRLFSSLDYLPSSPTMFNSGTSHEQLSS 253

Query: 371 CFLTTVPD-DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL   PD  L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK
Sbjct: 254 CFLLDSPDDHLETIYQRYTDVAMLSKFSGGIGLAYHRVRSRGSLIRATNGHSSGIVPWLK 313

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             + +  AVNQGGKRKGA C YLE WH DVEEFL LR NTGD+  RTH++N A+W+PDLF
Sbjct: 314 TLDASVAAVNQGGKRKGACCVYLEPWHADVEEFLSLRDNTGDEAARTHNLNLASWVPDLF 373

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  +  W+LF P +  DL DLYG+EFE  Y   ER          + + A  L+ +M
Sbjct: 374 MKRVEADGDWSLFDPKDARDLPDLYGEEFERRYVEAERAGLA-----KKTMKARELYARM 428

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           +  L +TG+ W+TFKD  N    Q      +VH SNLCTEI   +S+EE+AVCNLGSINL
Sbjct: 429 MRTLAQTGNGWMTFKDKSNRACNQTALPGRIVHLSNLCTEILEVTSNEESAVCNLGSINL 488

Query: 608 LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
             H A        FD++KLA T+RTAVR LD VID+N + I   ++SN   R +GLGLMG
Sbjct: 489 ARHTATLADGAVAFDFEKLARTVRTAVRQLDRVIDLNYYPIPSTRRSNLRWRPVGLGLMG 548

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
            Q     + +P+ +P A E++    E + +HA+S S +LA E+G + +F  +   +G   
Sbjct: 549 LQDVFFQMRLPFDAPAARELSRRISEEVYYHALSTSADLAAEKGRHPAFDETRAARGELQ 608

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D+ G + E              W+ L+ RV+  G+RNS  +AIAPTATIA+I G  + I
Sbjct: 609 FDAWGAVPEDAAR----------WEALRARVQAEGLRNSLLVAIAPTATIASIAGCYECI 658

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   NL+ +  +SGDF  +N +LV ELK+   W++A+ + LK  +GS+  ++ +P+ ++
Sbjct: 659 EPQVSNLFKRETLSGDFLQMNRYLVAELKRLGAWNDAVRARLKLAEGSVQGMDELPEQIR 718

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  TA+EI    LI+ A+ R  +IDQ+QSLNL+++ P+  +L  +Y  AW  GLKTTYY
Sbjct: 719 AVFRTAWEIPMRSLIDMAADRGAFIDQSQSLNLFIENPTIGQLSSMYFHAWKKGLKTTYY 778

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNS--------STHSLGIPSSCTSDTECEVCQ 954
           LRSR AT + K+T++    +                   +  +  +  +  +   CE CQ
Sbjct: 779 LRSRPATRIAKATVEAPPDRTPGDDAAPRREGGWVPAPPAKAAADVACALENPEACEACQ 838



 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 15 FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
            S           ++V KRNG     D +KI RA+ ++  A+    A
Sbjct: 29 MTSAGAEETPPHTTMRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDA 76


>gi|114635719|ref|XP_001159937.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 3
           [Pan troglodytes]
          Length = 752

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/776 (36%), Positives = 439/776 (56%), Gaps = 31/776 (3%)

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            +  + +Y G++  +L+T    ++ TL  K P+YA + AR  +  L +E         +K
Sbjct: 1   MKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KK 52

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
                M+ LY        +           ++  +   L + + Y+RDF++ Y G + L 
Sbjct: 53  VFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLE 112

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
             Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F  ++PTLFN+G
Sbjct: 113 RSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAG 169

Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S
Sbjct: 170 TNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNS 229

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+ 
Sbjct: 230 NGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 289

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + +
Sbjct: 290 FALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVV 344

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVC
Sbjct: 345 KAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVC 404

Query: 601 NLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           NL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G
Sbjct: 405 NLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIG 464

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G
Sbjct: 465 VQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKG 524

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +   D   +            T    W  LK+++   G+RNS  +A  PTA+ A I G +
Sbjct: 525 ILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNN 574

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPD
Sbjct: 575 ESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPD 634

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           DLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT
Sbjct: 635 DLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKT 694

Query: 900 -TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             YYLR+R A +  + TL          V   +     ++  +  S  +  EC +C
Sbjct: 695 GMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 750


>gi|95007128|emb|CAJ20349.1| ribonucleoside-diphosphate reductase, large chain [Toxoplasma
           gondii RH]
          Length = 855

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/842 (34%), Positives = 439/842 (52%), Gaps = 59/842 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   +E+   GL   V    V       MY G+  S+L+    
Sbjct: 38  MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 97

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +S  +    P+++++ AR  ++ L +           +            Y  +   E 
Sbjct: 98  QTSAYMAASHPDFSRLAARIAIDNLHKNTTDNFLTVIDQL---------HGYVDKLGREA 148

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                     +  +   L   L Y RDF ++Y G + L   Y L I+   +E PQ   MR
Sbjct: 149 KLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMR 208

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           VA G+   +    ++A+E Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D + G
Sbjct: 209 VACGIHCGD---VEKAIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDG 265

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L++ A+++K +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+QGG
Sbjct: 266 IFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGG 325

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG++  YLE WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAGWTL
Sbjct: 326 GKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTL 385

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L +++G EF+  YE YER     E +  + I A  LW  +L    ETG P++
Sbjct: 386 MCPNECPGLTEVWGDEFKELYERYER-----EGRGRKTIPAQHLWFAILQAQIETGTPYM 440

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
            +KD CN +S Q+++G +  SNLCTE+   +S +E AVCNL S++L       +  FDY+
Sbjct: 441 LYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTFDYE 500

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   ++   R L+ VID N + + +AKKSN  HR +GLG+ G   A  LL  P+ SPEA
Sbjct: 501 HLKRIVKVMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEA 560

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +     E I F A+ AS ELA E G Y++++GS   QG+   D  G+           
Sbjct: 561 RVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTP--------- 611

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    WD L++++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +SG+F
Sbjct: 612 SSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEF 671

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +RDLW E +   L  H+GS+ N++ IPDDLK ++ T +EI    +++ 
Sbjct: 672 FVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDL 731

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A  R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T+  
Sbjct: 732 AIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDS 791

Query: 919 --------------------VDGKLNAVPVTDPNSSTHSLGIPSSC-------TSDTECE 951
                                    +     D   +     +   C       + D  CE
Sbjct: 792 QLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCRWRRTGASPDEPCE 851

Query: 952 VC 953
           +C
Sbjct: 852 MC 853


>gi|328722843|ref|XP_003247688.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/820 (33%), Positives = 436/820 (53%), Gaps = 32/820 (3%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESD 197
             + KL +   DG +      ++ M +E+ C GL    +    +      ++  G+S   
Sbjct: 7   KSSDKLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQ 66

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++     ++  L  K P++A + AR  +  L +E                +  LY     
Sbjct: 67  IDNLAAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDV--------IYDLYNMSNE 118

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           R           H  ++      L N +K++RD+ + Y G + L   Y L ING  +E P
Sbjct: 119 RNQRRMKIISDFHYGVVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVVERP 178

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q   MRV++G+     E    A+E Y+L+SS +F  ++PT+FN+ T  PQLSSCFL    
Sbjct: 179 QHLLMRVSIGIHG---EDIDAAIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLVANK 235

Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL-GAHIHGTNGKSQGVIPFLKVANDTA 435
            D L      ++  A +++ SGG+G     +             +S G++  LKV ND A
Sbjct: 236 SDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLNDLA 295

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKR GAV  Y+E WH DV  + +LRKNTG+   +T D+  A WIPD FM+RV  
Sbjct: 296 QYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEA 355

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P +   L D++G +F   Y+ YE      E +  R++SA  LW +++T   E
Sbjct: 356 NQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITSQIE 410

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TG P++ +KD CN +S Q+++G +  SNLCTEI   +SSEE AVCNL SI +      N 
Sbjct: 411 TGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKPNG 470

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           ++D++KL    +   + L+ VID+N + + +A+ SN  HR +G+G+ G      L+  P+
Sbjct: 471 EYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPF 530

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SPE+ ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   D          
Sbjct: 531 GSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWN------- 583

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +  T    WD LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY +  
Sbjct: 584 ---VKPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRT 640

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F+VVN  L+N+L + +LW+E M ++L Y+ GS+  I+ IPD++K+++ T +E+   
Sbjct: 641 LSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQK 700

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A    +
Sbjct: 701 IILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQ 760

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T+       N    T+ N +     +  S  +   C +C
Sbjct: 761 FTVNKSTLSSNIAIQTEKNDALSMQELVCSLENKDACTMC 800


>gi|193669060|ref|XP_001942710.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Acyrthosiphon pisum]
 gi|328715730|ref|XP_003245707.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 802

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/820 (32%), Positives = 436/820 (53%), Gaps = 32/820 (3%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESD 197
             + KL +   DG +      ++ M +E+ C GL    +    +      ++  G+S   
Sbjct: 7   KSSDKLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQ 66

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++     ++  L  K P++A + AR  +  L +E                +  LY     
Sbjct: 67  IDNLAAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDV--------IYDLYNMSNE 118

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           R           H  ++      L N +K++RD+ + Y G + L   Y L ING  +E P
Sbjct: 119 RNQRRMKIISDFHYGVVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVVERP 178

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           Q   MRV++G+     E    A+E Y+L+SS +F  ++PT+FN+ T  PQLSSCFL    
Sbjct: 179 QHLLMRVSIGIHG---EDIDAAIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLVANK 235

Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL-GAHIHGTNGKSQGVIPFLKVANDTA 435
            D L      ++  A +++ SGG+G     +             +S G++  LKV ND A
Sbjct: 236 SDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLNDLA 295

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKR GAV  Y+E WH DV  + +LRKNTG+   +T D+  A WIPD FM+RV  
Sbjct: 296 QYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEA 355

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+L  P +   L D++G +F   Y+ YE      E +  R++SA  LW +++T   E
Sbjct: 356 DQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITSQIE 410

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           TG P++ +KD CN +S Q+++G +  SNLCTEI   +SSEE AVCNL SI +      N 
Sbjct: 411 TGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKPNG 470

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           ++D++KL    +   + L+ VID+N + + +A+ SN  HR +G+G+ G      L+  P+
Sbjct: 471 EYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPF 530

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SPE+ ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   D          
Sbjct: 531 GSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWN------- 583

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +  T    WD LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY +  
Sbjct: 584 ---VKPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRT 640

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F+VVN  L+N+L + +LW+E M ++L Y+ GS+  I+ IPD++K+++ T +E+   
Sbjct: 641 LSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQK 700

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A    +
Sbjct: 701 IILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQ 760

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T+       N    T+ N +     +  S  +   C +C
Sbjct: 761 FTVNKSTLSSNIAIQTEKNDALSMQELVCSLENKDACTMC 800


>gi|15617495|ref|NP_258291.1| RR1 [Spodoptera litura NPV]
 gi|15553231|gb|AAL01709.1|AF325155_21 ribonucleotide reductase [Spodoptera litura NPV]
          Length = 770

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/782 (33%), Positives = 422/782 (53%), Gaps = 31/782 (3%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   +    +++  +E+ C GL    V+   V     + +Y G++ ++L+  + 
Sbjct: 5   HVIKRDGRKEAVFMYKIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIA 64

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  +     +Y+ + AR  +  L +E   + +              Y     +   + 
Sbjct: 65  ETAAAMTIDHSDYSLLAARLAVSNLHKETKDSFFDVIIDM--------YEAIDPKTGVKT 116

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                 H +++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MR
Sbjct: 117 PMISNFHYNIIAANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMR 176

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382
           VA+G+     E    A++ YNL+S+ +F  ++PTLF++ T   Q+SSCFL  T  D + G
Sbjct: 177 VAIGIHG---EDIDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEG 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L++ AM++K  GG+G     VR  G+ + G  G S G++P L+V N+TA  V+QG 
Sbjct: 234 IYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGG 293

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  ++ W+L
Sbjct: 294 NKRPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSL 353

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P +   L D YG EF+  Y+ YE      E +  R++ A  +WR ++    ETG P++
Sbjct: 354 MCPMQSPGLADCYGAEFDALYQKYEE-----EGRYVRRVHAQTMWRAIIESQVETGTPYM 408

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDK 620
            +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +      +  +D++K
Sbjct: 409 LYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVVQSGVYDFEK 468

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+  ID N + + +AK SN  +R IG+G+ G   A  ++ +PY S  A 
Sbjct: 469 LKKITKIVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAA 528

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+  +  E I + A+ AS ELA   G Y +++GS   +GV   D             +  
Sbjct: 529 ELNKKIFETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWD---------NVTP 579

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F 
Sbjct: 580 SDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQ 639

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV +L    LW++ + + + +++GS+  IE IP ++++++ T +E+    LI  A
Sbjct: 640 VVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMA 699

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS N+Y+D PS  KL  I+  AW MGLKT  YYLR++ A +  + T+   
Sbjct: 700 ADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 759

Query: 920 DG 921
             
Sbjct: 760 AA 761


>gi|294471329|gb|ADE80913.1| RR1 [Spodoptera litura NPV]
          Length = 770

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/782 (33%), Positives = 422/782 (53%), Gaps = 31/782 (3%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   +    +++  +E+ C GL    V+   V     + +Y G++ ++L+  + 
Sbjct: 5   HVIKRDGRKEAVFMYKIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIA 64

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  +     +Y+ + AR  +  L +E   + +              Y     +   + 
Sbjct: 65  ETAAAMTIDHSDYSLLAARLAVSNLHKETKDSFFDVIIDM--------YEAIDPKTGVKT 116

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                 H +++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MR
Sbjct: 117 PMISNFHYNIIAANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMR 176

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382
           VA+G+     E    A++ YNL+S+ +F  ++PTLF++ T   Q+SSCFL  T  D + G
Sbjct: 177 VAIGIHG---EDIDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEG 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L++ AM++K  GG+G     VR  G+ + G  G S G++P L+V N+TA  V+QG 
Sbjct: 234 IYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGG 293

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  ++ W+L
Sbjct: 294 NKRPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSL 353

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P +   L D YG EF+  Y+ YE      E +  R++ A  +WR ++    ETG P++
Sbjct: 354 MCPMQSPGLADCYGAEFDALYQKYEE-----EGRYVRRVHAQTMWRAIIESQVETGTPYM 408

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDK 620
            +KD CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +      +  +D++K
Sbjct: 409 LYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVLQSGVYDFEK 468

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+  ID N + + +AK SN  +R IG+G+ G   A  ++ +PY S  A 
Sbjct: 469 LKKITKIVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAA 528

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+  +  E I + A+ AS ELA   G Y +++GS   +GV   D             +  
Sbjct: 529 ELNKKIFETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWD---------NVTP 579

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F 
Sbjct: 580 SDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQ 639

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV +L    LW++ + + + +++GS+  IE IP ++++++ T +E+    LI  A
Sbjct: 640 VVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMA 699

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS N+Y+D PS  KL  I+  AW MGLKT  YYLR++ A +  + T+   
Sbjct: 700 ADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 759

Query: 920 DG 921
             
Sbjct: 760 AA 761


>gi|193608391|ref|XP_001944671.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/815 (31%), Positives = 432/815 (53%), Gaps = 32/815 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L +   DG L      ++ + +E+ C GL    +    +      ++  G++   ++   
Sbjct: 12  LFVKKRDGRLEEVLMDKITLRIEQLCDGLNMDFIDPPEITLYVIGDLCPGITTVQIDNLA 71

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  L  K P++A + AR  +  L +E                +  LY     R    
Sbjct: 72  AETAAYLTTKHPDFAVLAARIAISNLYKETKENFSDV--------IYDLYNMSNERNQSR 123

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  H  ++      L N +K++RD+ + Y G + L   Y L I+G  +E PQ   M
Sbjct: 124 MPIISDFHYGIVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKIDGKVVERPQHLLM 183

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RV++G+     E    A+E Y+L+S  +F  ++PT+FN+ T  PQLSSCFL     D+L 
Sbjct: 184 RVSIGIHG---EDIDAAIETYDLMSLKYFTHASPTMFNASTPRPQLSSCFLVANKSDELE 240

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVANDTAVAVNQ 440
                ++  A +++ +GG+G     V   G         +S G++  LKV ND A  ++Q
Sbjct: 241 DFGKTVKTCAKISQSAGGIGVHLHNVGAAGTKWTKYPKCESHGLVEPLKVLNDLAQYIDQ 300

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG+R GAV  Y+E WH D+  + +LRKNTG+   +T D+  A WIPD FM+RV  N  W+
Sbjct: 301 GGRRPGAVAVYIEPWHADIYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQSWS 360

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P +   L D++G +F   Y+ YE      E    +++ A  LW +++T   ETG P+
Sbjct: 361 LMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKLYNKQVPARELWFRIITSQIETGMPY 415

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619
           + +KD CN +S Q+++G +  SNLCTE+   +S EE AVCNL SI +      N ++D++
Sbjct: 416 MLYKDACNAKSNQKNLGTIKCSNLCTEVIQYTSEEEVAVCNLASIAVNMFVKPNGEYDFE 475

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +   R L+ VID+N + + +A+ SN  HR IG+G+ G      L+  P+ SPE+
Sbjct: 476 KLLKITKIVTRNLNKVIDVNFYPVIEAETSNKRHRPIGIGIQGLADLFSLMRFPFGSPES 535

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E + + A+ AS ELA++ G YSS++GS   QG+   +             + 
Sbjct: 536 RKLNIQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYEMWN----------VK 585

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +S   W+ LK+++   G+RNS  +A  PTA+ A I G ++SI+P   NLY +  +SG+F
Sbjct: 586 PSSLWNWEILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSGEF 645

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           +V+N  L+N+L + +LW+E M + L +  GS+  I+ IPD++K+++ T +E+    +++ 
Sbjct: 646 SVINRHLLNDLIKLNLWNEDMRNKLIFFKGSVQKIKSIPDNIKELYKTNWELSQKIILDM 705

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R  +IDQ+QSLN+++++P+  K+  ++   W  GLKT  YYLR+R A    + T+  
Sbjct: 706 AADRGAYIDQSQSLNIHIEQPTISKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTVDK 765

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                N    T+ N + +   +  S  +   C +C
Sbjct: 766 STVSNNVAIQTEKNDALNMEQLVCSLENKDACTMC 800


>gi|294471323|gb|ADE80908.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/778 (33%), Positives = 426/778 (54%), Gaps = 32/778 (4%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++
Sbjct: 4   KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            ++     +Y+ + AR  +  L +E         +    + +  +Y     +        
Sbjct: 64  ASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+
Sbjct: 116 PDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385
           G+  ++      A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + GI+ 
Sbjct: 176 GIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG  KR
Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L  P
Sbjct: 293 PGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +   L D +G EFE  YE YE+Q      +  +++SA  LWR ++    ETG P++ +K
Sbjct: 353 MQSPGLADCHGVEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYMLYK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622
           D CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D+++L 
Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S  A E+
Sbjct: 468 EITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS ELA + G Y ++KGS   +G    D                ++
Sbjct: 528 NKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------GATPSN 578

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VV
Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  A+ 
Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+   
Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWNMGLKTGMYYLRTKPAVNAIQFTVDKN 756


>gi|108757444|ref|YP_633212.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus
           xanthus DK 1622]
 gi|108461324|gb|ABF86509.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus
           xanthus DK 1622]
          Length = 785

 Score =  665 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/819 (38%), Positives = 468/819 (57%), Gaps = 43/819 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G   + +  ++   V  +C GL  V +  V ++T   +YDG +  +L++  I 
Sbjct: 1   MRVRKRNGGTETVDLNKIVRAVGRSCVGLPRVDAMRVATKTISGLYDGATTRELDSLSIQ 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y +++AR L   +++EV                       F + +  G 
Sbjct: 61  TAAALIVEEPEYGRLSARLLATFIQKEVSNQDI----------------HSFSQSVAAGH 104

Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319
           K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L        +E PQ 
Sbjct: 105 KHGLIADRLLQFVQANARKLNAAIDPSRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQE 164

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
           FF+RVA  L+         A+E Y L SS  ++ S+PTLFNSGTRH QLSSCFL   P D
Sbjct: 165 FFLRVASALSGD---NVNEAIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPAD 221

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  AV
Sbjct: 222 ELDAIYKKYSDIAMLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAV 281

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGGKRKGA C YLETWH D+E+FL+LR+NTGDD RRTH++N ANW+PDLFMKRV  +  
Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGD 341

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LF P  V    DLYG  FE AY   E           RK+ A  L+ +M+  L +TG+
Sbjct: 342 WSLFDPKSVPHFTDLYGDAFEQAYAKAEADGLA-----MRKVKARDLYARMMKSLAQTGN 396

Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
            W+TFKD  N +S Q  +   V+H SNLCTEI   +S  ETAVCNLGS+NL     + +F
Sbjct: 397 GWMTFKDISNRKSNQTGKAGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRMLVDGKF 456

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+++L +  + A+R LD VID+N + I  A  SN   R +GLGLMG Q     L + + S
Sbjct: 457 DFERLRANAQLAMRQLDRVIDLNYYPIPTAASSNKRWRPVGLGLMGLQDVFFQLKLAFDS 516

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  ++ +  E I F A++ S ELA++ GA+ SF  +   +G    D  G++ E     
Sbjct: 517 AEARALSKKISEEIYFAALTTSCELAEQYGAHESFAETRAAKGELQFDHWGVVPEDTAR- 575

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD L++R+   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +S
Sbjct: 576 ---------WDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLS 626

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GDF  VN +LV +L+   LW+E + + +K  +GS+ +I  +P++L+ ++ TA+E+    L
Sbjct: 627 GDFLQVNRYLVRDLQALGLWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSL 686

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           ++  + R  +IDQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + K+T+
Sbjct: 687 LDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATV 746

Query: 917 -KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             G    +          +T +  +  S  +   CE CQ
Sbjct: 747 GAGGGASVAQAAPAPVAKATEAEAVACSLENPEACEACQ 785


>gi|291244082|ref|XP_002741928.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain-like,
           partial [Saccoglossus kowalevskii]
          Length = 759

 Score =  665 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/783 (37%), Positives = 432/783 (55%), Gaps = 34/783 (4%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +       +Y G++  +L+T    ++ ++  K P+YA + AR  +  L +E   T   
Sbjct: 1   AAITMRVITGVYPGVTTVELDTLAAETAASMTTKHPDYAVLAARIAVSNLHKETKKTFSA 60

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
                    M  L+     R  +           ++  +   L + + Y+RDF + + G 
Sbjct: 61  V--------MDDLFNYVNPRNNKPSPMISTKIHDIITNNAERLNSAIIYDRDFNYNFFGF 112

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + L   Y L ING   E PQ   MRV++G+   + E    A+E YNLLS   F  ++PTL
Sbjct: 113 KTLERSYLLKINGKVAERPQHMLMRVSVGIHHNDIE---GAIETYNLLSEKWFTHASPTL 169

Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           FN+GT  PQLSSCFL T+ DD + GI+  L++ A+++K +GG+G +   +R  G++I GT
Sbjct: 170 FNAGTCRPQLSSCFLLTMKDDSIEGIYDTLKQCALISKSAGGIGVNVHCIRASGSYIAGT 229

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           NG S G++P L+V N+TA  V+QG  KR GA   YLE WH D+ +FLD +KNTG + +R 
Sbjct: 230 NGSSNGLLPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLDAKKNTGKEEQRA 289

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            D+  A WIPDLFMKRV  N  WTL  P+E   LHD++GKEFE  YE YER     E K 
Sbjct: 290 RDLFYALWIPDLFMKRVETNQDWTLMCPNECPGLHDVWGKEFEDLYEKYER-----ENKG 344

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + I A  LW  ++    ETG P++ +KD CN +S  Q++G +  SNLCTEI   SS +E
Sbjct: 345 TKTIKAQLLWYAIIEAQTETGTPYMLYKDACNRKSNHQNLGTIKCSNLCTEIVEFSSPDE 404

Query: 597 TAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            AVCNL SI +      ++ +D+ KL       VR L+ +ID+N + +E+A+ SN  HR 
Sbjct: 405 VAVCNLASIAVNMFVKPDKTYDFKKLEQVTGVIVRNLNKIIDVNFYPVEEARNSNMRHRP 464

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK--- 712
           IG+G+ G   A  L+  P+ S EA+ +  +  E I + A+ AS ELA+  GAY S+K   
Sbjct: 465 IGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDGAYESYKFGD 524

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G    +G+   D   +            T    WD LKK + T G+RNS  +A  PTA+ 
Sbjct: 525 GCPVSKGILQYDMWDVTP----------TDLHDWDALKKDIATHGLRNSLLLAPMPTAST 574

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           A I G ++S++P   N+Y +  +SG+F VVN  L+ +L +  LW++ M + L  ++GSI 
Sbjct: 575 AQILGNNESVEPYTTNIYSRRVLSGEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSIQ 634

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892
           +I+ IPD +KK++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++  A
Sbjct: 635 SIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFFA 694

Query: 893 WLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL-NAVPVTDPNSSTHSLGIPSSCTSDTEC 950
           W  GLKT  YYLR+R A    K T+     K    V         +   +  S  +  +C
Sbjct: 695 WKQGLKTGMYYLRTRPAADPIKFTVNKTSLKPTTNVEAAAEKEEENQAAMVCSLQNKDDC 754

Query: 951 EVC 953
            +C
Sbjct: 755 LMC 757


>gi|73852902|ref|YP_294186.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
 gi|72415618|emb|CAI65855.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
          Length = 746

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/757 (35%), Positives = 407/757 (53%), Gaps = 28/757 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +GT  S    ++   ++    GL  V   +V  +  + +YDG++   L+   + 
Sbjct: 1   MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L    P+Y+K+ AR  +  L +                 M  LY     +  +   
Sbjct: 61  TATYLTMTHPDYSKLAARIAVSSLHKMTSNKFSSV--------MDSLYNYVNTKTGKWSP 112

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                    +  +     + + YE+D  ++  G + +   Y   ING  +E PQ   MRV
Sbjct: 113 LIADDIIECIRSNAEVFDDVINYEKDLEYDIFGYKTMEKSYLSRINGDIVERPQHMLMRV 172

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383
           A+G+   +      A+E Y LLS+  F  +TPT++N+GTR+PQ+SSCFL  + DD + GI
Sbjct: 173 AIGIHCPD---VDAAIETYKLLSARVFTHATPTMYNAGTRNPQMSSCFLLKMKDDSIEGI 229

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           F  L+  A+++K +GG+G     VR   ++I GT G S G++P L+V ++TA  V+QGG 
Sbjct: 230 FDTLKNCALISKNAGGIGVSIHNVRAQNSYIRGTGGYSNGLVPMLRVFDNTARYVDQGGG 289

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGA   YLE  H D+ EFL+LRKNTG +  R  D+  A W+ D FMKRV     W+LF
Sbjct: 290 KRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLF 349

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E   L D++G ++   YE YE      E K  + I A  LW  ++    ETG P++ 
Sbjct: 350 CPHECPGLSDVWGDDYVALYEKYE-----SEGKARKTIPAQKLWFAIMDSQIETGTPYML 404

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN +S QQH+G +  SNLCTEI   ++ +ETAVCNL SI L A   +  FD+  L 
Sbjct: 405 YKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVKDGTFDHQHLY 464

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
                A   LD VID N + I +A++SN  HR IGLG+ G      +L + + SP+A  +
Sbjct: 465 DVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSPDARVL 524

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             E  E + F A++AS +LA+ +G YS+++GS   QG F  D   +            + 
Sbjct: 525 NKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSQGKFQFDLWNVTP----------SV 574

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R  WD L+  VK  G RNS   A  PTA+ A I G ++  +P   NLY +  +SG+F VV
Sbjct: 575 RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVV 634

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +L  R LW ++M + +   +GS+ NI   P+DLK I+ T +EI    LI+ A+ 
Sbjct: 635 NKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAAD 694

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           R  +I Q+QS N+++ +P+  KL  ++   W  GLKT
Sbjct: 695 RGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731


>gi|257053404|ref|YP_003131237.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
           utahensis DSM 12940]
 gi|256692167|gb|ACV12504.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus
           utahensis DSM 12940]
          Length = 815

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/816 (49%), Positives = 520/816 (63%), Gaps = 23/816 (2%)

Query: 156 SFNSKRLEMIVEEACSGLQDV---SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
              + R+  I++ A  G   V       +     +N Y G   +++  A++ +    IE 
Sbjct: 6   PTQTDRIASILDRATDGEPTVTESDRTALRRAIDENCYAGADRAEVYEAILGTLSARIEA 65

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           +P Y +V AR   ++   EV+       +  T  E+   Y   F   IE GV   LL   
Sbjct: 66  KPAYKRVAARVFRQRYYHEVIG------EDLTGTELDRAYRTIFRENIERGVATDLLDTR 119

Query: 273 MMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330
           ++D FDL  LA  L  ERD  FEYL ++ LY RYFL   +G  +E+PQAF+MRVAMGLA+
Sbjct: 120 LVDRFDLDALAEYLAPERDEHFEYLAMETLYQRYFLRTNDGEHLELPQAFWMRVAMGLAV 179

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           +E +   RA EFY++LS   F  STPTLF+SGT HPQLSSC+LTTVPDDL GIF A + +
Sbjct: 180 EEDDPNARAKEFYDVLSKLEFTPSTPTLFHSGTTHPQLSSCYLTTVPDDLEGIFDAYKHH 239

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K+SGGLGNDWTP+R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+GA CA
Sbjct: 240 AQLSKWSGGLGNDWTPLRAEGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACA 299

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  WH+D   F+DL++ TGD+RRRT DMNTA WIPDLFM+RV     WTLFSPDEV DL
Sbjct: 300 YLAIWHLDFPAFVDLKRATGDERRRTPDMNTAAWIPDLFMERVQAGESWTLFSPDEVGDL 359

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           H+  G+ F   Y  YE+ A+ G+I+ F  + A  LWR +LT LFETGHPW+TFKDPCNI 
Sbjct: 360 HEATGEAFAEKYREYEQAAENGDIENFETVEAAELWRTLLTRLFETGHPWVTFKDPCNIG 419

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           SPQ H G + SSNLCTEITLN+S++E AVCNLGS+N   H  + + D D L  T+ TA+R
Sbjct: 420 SPQDHEGTIRSSNLCTEITLNTSTDEHAVCNLGSVNFATHMRDGELDRDYLEDTVETAMR 479

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNV+D+  +  E+A+ SN  HR +GLG MGF  AL  + +P  S EAVE A+   EF+
Sbjct: 480 MLDNVVDLCFYPTEEAEDSNMRHRPVGLGTMGFHEALMEIGVPMNSNEAVEKANRWQEFV 539

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749
           ++HAI  S ELA ERGAY SF+GS WD+ + P D++ LL E R  E+   RT  L WD +
Sbjct: 540 AYHAIRTSSELAGERGAYPSFEGSKWDRDILPQDTVDLLEEERGREIPTERTETLEWDAV 599

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +K +   GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFT+VN  LV +
Sbjct: 600 RKSIAEHGMRNSNTMAIAPTATVSTINGTTASIEPQYSNLYVKSNMSGDFTIVNDHLVAD 659

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L++RDLWD+ M   +KYHDGSI  IE IP+DL++++  AFEIDP   +   + RQ WIDQ
Sbjct: 660 LRERDLWDDEMRDRIKYHDGSIQEIEAIPEDLRELYRGAFEIDPRHQLRLTAHRQTWIDQ 719

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD--GKLNAVP 927
           + S N++     G  LD IY  AW +GLKTTYYLR+  A+ VEKSTL   +     +   
Sbjct: 720 SVSHNVFFPSTDGTLLDDIYTTAWELGLKTTYYLRTLGASQVEKSTLDLSEYGKTQHRDA 779

Query: 928 VTDPNSSTHSLGIPS---------SCTSDTECEVCQ 954
             DP   T                +   D  C+ CQ
Sbjct: 780 SGDPEDGTTRSNETDRDQGGHSDLASVEDPTCDACQ 815


>gi|294471336|gb|ADE80919.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/778 (33%), Positives = 425/778 (54%), Gaps = 32/778 (4%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++
Sbjct: 4   KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            ++     +Y+ + AR  +  L  E         +    + +  +Y     +        
Sbjct: 64  ASMTIDHSDYSLLAARLAVSNLHNET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+
Sbjct: 116 SDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385
           G+  ++      A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + GI+ 
Sbjct: 176 GIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG  KR
Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L  P
Sbjct: 293 PGAFAVYVEPWHADVSDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +   L D +G EFE  YE YE+Q      +  +++SA  LWR ++    ETG P++ +K
Sbjct: 353 MQSPGLADCHGVEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYMLYK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622
           D CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D+++L 
Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +   R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +PY S  A E+
Sbjct: 468 EITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS ELA + G Y ++KGS   +G    D                ++
Sbjct: 528 NKKIFETIYYGALEASCELAAKDGPYETYKGSRASRGELQYDMWN---------GATPSN 578

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VV
Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  A+ 
Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+   
Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNAIQFTVDKN 756


>gi|313768342|ref|YP_004062022.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599038|gb|ADQ91062.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
          Length = 749

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/780 (36%), Positives = 432/780 (55%), Gaps = 42/780 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL D   S  V  + + +MYD ++  +++T   
Sbjct: 1   MRVIKRSGRIEDMKFDNVTNRIKNLTYGLSDKCDSSKVAQQVFSSMYDNITTQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R +   +++                    + P  F   + + 
Sbjct: 61  EICVGMITSDPDYETLATRIVASNIQK--------------------VCPNNFHLAMRKL 100

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
            KA ++ + +++     +   +K +RDF F Y GL+ L   Y   ++G  IE PQ  FMR
Sbjct: 101 QKAGIITDEVVE-VAQQVKEHIKSDRDFDFGYFGLKTLEKSYLQRVDGKLIETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           VA+G+  K+      A++ YN +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHGKD---VPSALDTYNKMSQGLFIHATPTLFNAGTPRPQMSSCFLIANKADSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G L E A ++K++GG+G     +R   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDIRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL+LR N GD+  R  D+ +A WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHSDIMDFLELRLNQGDEEARCRDLFSAMWIPDLFMKRVEEGGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D+YG+EFE  Y  YE +           + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAKGLSDVYGQEFEDLYTKYEEEGLANA-----TVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620
           +KD CN +S Q+++GV+ SSNLCTEI   +  +ET+VCNL SI L  +       FDYDK
Sbjct: 392 YKDACNSKSNQKNLGVIKSSNLCTEILEYTDKDETSVCNLASIALPKYVNKETKTFDYDK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +T  + L+ VID N + +E A++SN  HR IGLG+ G      L  +P+   E+ 
Sbjct: 452 LHEITKTVTKNLNRVIDRNFYPVETARRSNMKHRPIGLGVQGLADVFILCGLPFDCEESR 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +     E +   A+ AS ELA+  G+Y SFKGS   +GV   D                
Sbjct: 512 LMNAHIFETMYHAALEASSELAEVEGSYESFKGSPAAEGVLQPDMWDG--------ETKF 563

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  WD +++RVKT G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 564 SGRYDWDAMRERVKTKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 623

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV++LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 624 VVNKHLVDDLKKVGLWSKEMKDLMVKAGGSIQNIVDIPDDIKNLYKTVWEISQKCIIDMA 683

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+  
Sbjct: 684 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKAGLKTGMYYLRSKAKARPIQFSLEPD 743


>gi|283481642|emb|CAZ69758.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 99B1]
          Length = 746

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/757 (35%), Positives = 404/757 (53%), Gaps = 28/757 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  +GT  S    ++   ++    GL  V   +V  +  + +YDG++   L+   + 
Sbjct: 1   MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  L    P+Y+K+ AR  +  L +                 M  LY     +  +   
Sbjct: 61  TATYLTMTHPDYSKLAARIAVSSLHKMTSNKFSSV--------MDSLYNYVNTKTGQWSP 112

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                    +  +     + + YE+D  ++  G + +   Y   ING  +E PQ   MRV
Sbjct: 113 LIADDIIECIRSNADVFDDVINYEKDLEYDIFGYKTMEKSYLSRINGDIVERPQHMLMRV 172

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383
           A+G+   +      A+E Y LLS   F  +TPT++N+GT++PQ+SSCFL  + DD + GI
Sbjct: 173 AIGIHCPD---VDAAIETYKLLSQKKFTHATPTMYNAGTKNPQMSSCFLLKMKDDSIEGI 229

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           F  ++  A+++K +GG+G     VR   ++I GT G S G++P L+V + TA  V+QGG 
Sbjct: 230 FDTIKNCALISKNAGGIGVSIHNVRAQNSYISGTGGYSNGLVPMLRVFDSTARYVDQGGG 289

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YLE  H D+ EFL+LRKNTG +  R  D+  A W+ D FMKRV     W+LF
Sbjct: 290 RRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLF 349

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E   L D++G ++   YE YE      E K  + I A  LW  ++    ETG P++ 
Sbjct: 350 CPHECPGLSDVWGDDYVALYEKYE-----SEGKARKTIPAQKLWFAIMDSQIETGTPYML 404

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN +S QQH+G +  SNLCTEI   ++ +ETAVCNL SI L +   +  FD+  L 
Sbjct: 405 YKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPSFVKDGSFDHQHLY 464

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
                A   LD VID N + I +A++SN  HR IGLG+ G      +L I + SP+A  +
Sbjct: 465 DVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKISFDSPDARVL 524

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             E  E + F A++AS +LA+ +G YS+++GS    G F  D   +            + 
Sbjct: 525 NKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSNGKFQFDMWNVTP----------SV 574

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R  WD L+  VK  G RNS   A  PTA+ A I G ++  +P   NLY +  +SG+F VV
Sbjct: 575 RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVV 634

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N +LV +L  R LW ++M + +   +GS+ NI   P+DLK I+ T +EI    LI+ A+ 
Sbjct: 635 NKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAAD 694

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           R  +I Q+QS N+++ +P+  KL  ++   W  GLKT
Sbjct: 695 RGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731


>gi|323308679|gb|EGA61920.1| Rnr3p [Saccharomyces cerevisiae FostersO]
          Length = 887

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/818 (32%), Positives = 415/818 (50%), Gaps = 40/818 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L+  
Sbjct: 16  QMYVIKRDGXKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   +    P+YA + AR  +  L ++      K         ++ L+        +
Sbjct: 76  AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                     +++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   
Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT HPQ+SSCFL  + DD +
Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+E AM++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+Q
Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   +LE WH D+ +F+D+RK  G +  R  D+  A WIPDLFMKRV ++  W
Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPW 364

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG+ 
Sbjct: 365 TLFSPSXAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGNT 418

Query: 560 WITFKDPCNIR--SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611
           +  F      +    QQ++G + SSNLC EI   SS +ETAVCNL SI L A        
Sbjct: 419 FPWFYKDACKQEGQNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDG 478

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L 
Sbjct: 479 KTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTXMMLR 538

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +P+ S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D       
Sbjct: 539 LPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP- 597

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y 
Sbjct: 598 ---------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYS 648

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI
Sbjct: 649 RRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEI 708

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++
Sbjct: 709 SQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASA 768

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
             + T+        A  +   +     + +P       
Sbjct: 769 AIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSE 806


>gi|325114109|emb|CBZ49667.1| putative ribonucleoside-diphosphate reductase, large subunit
           [Neospora caninum Liverpool]
          Length = 886

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/850 (34%), Positives = 439/850 (51%), Gaps = 67/850 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  ++   +E+   GL   V    V       MY G+  S+L+    
Sbjct: 61  MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 120

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +S  +    P+++K+ AR  ++ L +          ++            Y  +   E 
Sbjct: 121 QTSAYMAASHPDFSKLAARIAIDNLHKNTTDNFLTVIEQL---------HGYVDKLGREA 171

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                     +  +   L   L Y RDF ++Y G + L   Y L I+   +E PQ   MR
Sbjct: 172 KLVSTEVYEFVKANEKALNEALNYSRDFEYDYFGFKTLERSYLLKIHDRIVERPQHMLMR 231

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           VA G+     E+   AVE Y L+S   F  +TPTLFN+GT  PQ+SSCFL T+  D + G
Sbjct: 232 VACGIHCGNVER---AVETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDG 288

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L++ A+++K +GGLG   T +R   ++I GTNG S G++P L+V ND A  V+QGG
Sbjct: 289 IFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGG 348

Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KRKG++  YLE WH DV +FLD++KN G + RR  D+  A WIPDLFM+RV  NAGWTL
Sbjct: 349 GKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTL 408

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L +++G+EF+  YE YER     E +  + I A  LW  +L    ETG P++
Sbjct: 409 MCPNECPGLTEVWGEEFKELYERYER-----EGRGRKTIPAQHLWFAILQAQIETGTPYM 463

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
            +KD CN +S Q+++G +  SNLCTE+   +S +E AVCNL S++L          FDY+
Sbjct: 464 LYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRETRTFDYE 523

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   ++   R L+ VID N + + +AK SN  HR +GLG+ G   A  LL  P+ SPEA
Sbjct: 524 HLKKIVKVMTRNLNRVIDRNYYPVPEAKNSNLRHRPVGLGVQGLADAFMLLRYPFDSPEA 583

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +     E I + A+ AS ELA E G Y++++GS   QG+   D  G+           
Sbjct: 584 RLLNRNIFECIYYAALEASCELAAEEGPYATYEGSPMSQGILQFDMWGVTP--------- 634

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    W  L++++K  G+RNS  ++  PTA+ + I G +++ +P   N+Y +  +SG+F
Sbjct: 635 SSGLCDWSALREKIKKHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEF 694

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            VVN  L+ +L +RDLW E +   L  H+G + N++ IPDDLK ++ T +EI    +++ 
Sbjct: 695 FVVNPHLLRDLLERDLWSEDVKQQLIAHNGCVLNMDVIPDDLKALYKTVWEIKQRVVLDL 754

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK- 917
           A  R  +IDQ+ SLN+++  P+  KL  ++   W  GLKT  YYLR+++A    K T+  
Sbjct: 755 AIDRSPYIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDS 814

Query: 918 ---------------------------GVDGKLNAVPVTDPNSSTHSLGIPSSC------ 944
                                        + K   V   DP  +  +      C      
Sbjct: 815 QLAMSAKAKLSGSTFSGVLTTTTSSAADEETKRQDVGSADPVETARTEASGPVCRWRPKG 874

Query: 945 -TSDTECEVC 953
            + D  CE+C
Sbjct: 875 ASPDEPCEMC 884


>gi|335682|gb|AAA48274.1| Vaccinia virus matrix 1 protein
          Length = 771

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/814 (33%), Positives = 438/814 (53%), Gaps = 50/814 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L+T  
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + T   + P+YA + AR  +  L +E         +K     M+ L+     +  + 
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                 +   +++     L + + YERDF++ Y G + L   Y L IN   +E PQ   M
Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+          A+E YNLLS   F  ++PTLFN+GT   Q+SSCFL  +  D + 
Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA  ++QG
Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR G +  YLE WH D+  FLDL+KNTG++  RT D+  A WIPDLFMKRV  +  W+
Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  PDE   L +++G EFE  Y  YER     E +    I A  +W+ ++    ETG P+
Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNLGS+ L     + +FD+ K
Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLGSVALNMFVIDGRFDFLK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++  VR L+ +IDIN + I +A+ SN  HR IG+G+ G   A  LL+ P+ S EA 
Sbjct: 465 LKVVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           +I  +  E I + A+ AS ELA++ G Y ++ GS    G+   D   ++           
Sbjct: 525 DINKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    W+ LK +++T G+RNS  +A  P    A I G ++S++P   N+Y +  +SG+F 
Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIYTRRVLSGEFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+  L +R LW++ + + +    GSI N   +P+D+K+++ T +EI    +I+ A
Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL   
Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K                  P        C  C
Sbjct: 754 KIK------------------PPVVCDSEICTSC 769


>gi|312599278|gb|ADQ91301.1| hypothetical protein BpV2_134c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 748

 Score =  660 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/780 (33%), Positives = 419/780 (53%), Gaps = 43/780 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           +++    G +       +   + +   GL + V    +  + + ++YDG+   +++T   
Sbjct: 1   MRVTKRSGRVEDVKFDNVTNRISKLTEGLSETVDVTKIAQQVFSSIYDGIKTPEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R     +++      +   +K     +           +++ 
Sbjct: 61  EICIGMITSDPDYEILATRITASNIQKRAANNFHIAMRKLHKAGIVTHEVLEVSSKVKDD 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                                +K ERDF F Y GL+ L   Y   I+G  IE PQ  +MR
Sbjct: 121 ---------------------IKPERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYMYMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+   +       +E Y  LS   F+ +TPTLFN+GT  PQ+SSCFL +   D + G
Sbjct: 160 VAIGIHGHD---IDHVLETYEALSKGLFIHATPTLFNAGTPRPQMSSCFLISNKEDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  ++E A ++K++GG+G     VR   +HI GTNG S G+IP L+V N TA  VNQ G
Sbjct: 217 IYDTVKECARISKWAGGIGLHIHDVRANKSHIRGTNGTSDGIIPMLRVYNTTARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL++R N GD+  R  D+ +A WIPDLFMKRV     W+LF
Sbjct: 277 RRKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESGGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD    L D+YGKEFE  YE YE      +    + + A  +W+ ++    ETG P++ 
Sbjct: 337 CPDVARGLSDVYGKEFEELYEKYEA-----DGIATKVVPASEVWKAIIKSQSETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620
           +KD CN +S  +H+G + SSNLCTEI   +  +ETAVCNL SI L  +      +F++++
Sbjct: 392 YKDACNEKSNHKHIGTIKSSNLCTEIVEYTDKDETAVCNLASIALPKYVDVEKKEFNHEE 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ VID N +  E  K+SN  HR IG+G+ G      +L + + S E+ 
Sbjct: 452 LHRVTKMVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESR 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   ++ +S ELA+  G Y SFKGS + +G+   D      +         
Sbjct: 512 KLNIDIFETIYHASLESSCELAEMYGPYESFKGSPFSKGILQFDMWDRDPKFSG------ 565

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
             R  W+ +++ VK  G  NS  +A  PTA+ + I G ++  +P   N+Y++  ++G+F 
Sbjct: 566 --RYDWNAMRELVKK-GTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFV 622

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LVN+LK+R LW + M   +   +GS+ NI  IPDDLK+++ T +E+    +I+ A
Sbjct: 623 VVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMA 682

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++ +   + +L+  
Sbjct: 683 ADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLEAE 742


>gi|66810005|ref|XP_638726.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
 gi|74854399|sp|Q54Q71|RIR1_DICDI RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|60467345|gb|EAL65376.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
          Length = 870

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/808 (32%), Positives = 416/808 (51%), Gaps = 43/808 (5%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYK 187
           +          K+ ++  DGT  + +  ++   +   C          V    V  +   
Sbjct: 4   NSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVS 63

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            ++ G+  ++L+     ++  +  + P+Y  + AR  +  L ++   +  +  +K   +E
Sbjct: 64  GVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKK--QYE 121

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                       + + +   ++           L + + Y RDF +++ G + L   Y  
Sbjct: 122 FINPKSNLLAPLVSKELYEIVMKHG------ERLESVIDYYRDFDYDFFGFKTLERSYLH 175

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            ING  +E PQ   MRV++G+     E  + A+  Y  LS   F  +TPTLFN+GT  PQ
Sbjct: 176 RINGKIVERPQHMLMRVSIGIHG---EDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQ 232

Query: 368 LSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +SSCFL  +  D + GI+  L++ A+++K +GG+G     +R   ++I GTNG S G++P
Sbjct: 233 MSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVP 292

Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+V NDTA  V+QGG KRKGA   YLE WH DV EF+DL+KNTG +  R  D+  A W+
Sbjct: 293 MLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWV 352

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D+FM+RV QN  W LF P+E   L + + +E    Y  YE   D       R I A  L
Sbjct: 353 SDIFMERVEQNGDWALFCPNEAPGLAETHSEEHRALYLKYEATPDLPR----RVIKAQEL 408

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++    ETG P+I +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SI
Sbjct: 409 WFAIMESQVETGTPFILYKDACNAKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASI 468

Query: 606 NLLAH---------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            L                +FD+  L    +     L+ +ID N + + +AK SN  HR I
Sbjct: 469 ALPKFVRQKVGSTDPKEKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPI 528

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+ G       + +P+ S  A ++  E  E I F A++AS ELA   G Y SFKGS  
Sbjct: 529 GIGIQGLADVFIKMRMPFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPA 588

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMRNSNCMAIAPTATIANI 775
            +G+   D   +            +SR  W ELK  +    G+RNS  +A  PTA+ + I
Sbjct: 589 SKGILQFDMWNVTP----------SSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQI 638

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G ++  +P   N+Y +  ++G+FT+VN  L+ +L +  +W   M + +    GSI +I 
Sbjct: 639 LGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIG 698

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            IPDDLK+++ T +EI    LI+ A+ R  +IDQ+QS N+++ EP+  KL  ++  +W  
Sbjct: 699 GIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKK 758

Query: 896 GLKT-TYYLRSRSATSVEKSTLKGVDGK 922
           GLKT  YYLR+R A    + T+  +  +
Sbjct: 759 GLKTGMYYLRTRPAADAIQFTVDPIVSQ 786


>gi|313233631|emb|CBY09802.1| unnamed protein product [Oikopleura dioica]
 gi|313245650|emb|CBY40318.1| unnamed protein product [Oikopleura dioica]
          Length = 832

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/856 (33%), Positives = 438/856 (51%), Gaps = 74/856 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
            LK+   DG L      ++   +++ C  L    +S   V  +    +YDG++  +L+  
Sbjct: 3   DLKVKKRDGRLEEVFFDKITSRIKKLCYNLDMNILSPLSVTRKVIDGIYDGVTTVELDNL 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++  +    P+YA + AR  +  L +E      +  +   + E             +
Sbjct: 63  AAETAAQMSVNHPDYAILAARISVSNLHKETKKLFTEVIEDLRNVEGY---------NGK 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +          ++  +   L + + ++RD+ + Y G + L   Y + I+G  IE PQ   
Sbjct: 114 KKPLISEKTYKIVVANKDKLNSAVIHDRDYEYNYFGFKTLERSYLMKIDGKTIERPQHML 173

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRV++G+     E    A+E YN +S  +F  ++PTLFNSGT  PQ+SSCFL  + DD +
Sbjct: 174 MRVSVGIHG---EDIDAALETYNFMSLKYFTHASPTLFNSGTPRPQMSSCFLVAMQDDSI 230

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A+++K +GG+G +   +R  G++I GTNG S G+IP L+V N+TA  V+Q
Sbjct: 231 EGIYDTLKTCALISKNAGGIGVNVHNIRARGSYIGGTNGHSNGLIPMLRVYNNTARYVDQ 290

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           G  KR GA   YLE WH D+ EFLD +KNTG +  R  D+  A WIPDLFMKRV  N  W
Sbjct: 291 GGNKRPGAFAVYLEPWHADIFEFLDAKKNTGSEETRARDLFYALWIPDLFMKRVESNGDW 350

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLF PDE   LH+ +G+EFE  +E YE+     E +    I A ALW K++    E G P
Sbjct: 351 TLFCPDEAPGLHECWGEEFEALFEKYEK-----EGRGKETIKAQALWYKIIEAQIEVGVP 405

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---- 615
           ++ +KD CN +S QQ++G +  SNLCTEI   SS +E AVCNL S++L A    N     
Sbjct: 406 YMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSKDEVAVCNLASLSLPAFIRKNDQGFS 465

Query: 616 -FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +D+  L    +   R L+ VIDIN + +E+A+ SN  HR IG+G+ G      +L + +
Sbjct: 466 VYDFQDLYDKTKIVTRNLNKVIDINFYPVEQARFSNMQHRPIGIGVQGLADTFCMLKLAF 525

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAY------------SSFKGSLWDQGVFP 722
            S EA  +  +  E I F A+ AS ELA++ G Y                 S   QG F 
Sbjct: 526 ESDEAKLLNKQIFETIYFAAVEASCELAEKEGPYLSFRAHTHPITGQKNPDSPMAQGKFQ 585

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D  G+            T    WD L+++V   G+RNS  ++  PTA+ A I G ++SI
Sbjct: 586 FDLWGVTP----------TDLWDWDSLREKVTRHGVRNSLLVSPMPTASTAQILGNNESI 635

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   N+Y +  +SG+F VVN  L+ EL + + WD+ +   +   +GSI N++ IP D+K
Sbjct: 636 EPFTNNIYTRRVLSGEFQVVNPHLLRELTEINYWDDEIRQQIVQDNGSIQNLD-IPADIK 694

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
           + + T +EI    +++ A+ R  +IDQ+QSLN+++ +P    L  ++   W MGLKT  Y
Sbjct: 695 ERYRTVWEIKQKNVLQMAADRGPFIDQSQSLNIHVAQPKYGTLTSMHFTGWKMGLKTGMY 754

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAV------------------------PVTDPNSSTHS 937
           YLR++ A +  K T+     K+                           P  D     + 
Sbjct: 755 YLRTKPAAAAIKFTVDKSKVKVEEKENVEVKIEAATKSPVKAVSSLKEGPSEDDIRRLNE 814

Query: 938 LGIPSSCTSDTECEVC 953
             +  S  +   C +C
Sbjct: 815 AALVCSLENKEACMMC 830


>gi|131840167|ref|YP_001096176.1| ORF141 [Cyprinid herpesvirus 3]
 gi|84181499|gb|ABC55102.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706742|gb|ABG42968.1| ORF141 [Cyprinid herpesvirus 3]
 gi|129560660|dbj|BAF48955.1| ribonucleotide reductase large subunit [Cyprinid herpesvirus 3]
          Length = 806

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/829 (32%), Positives = 430/829 (51%), Gaps = 43/829 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              + +   DGT    +  ++   + E     + V  +++  +    + +G   S+++  
Sbjct: 2   EDTIYVTKRDGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDEL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L  ++  +    P+Y+K+ AR  +  L +       +  ++            +F    +
Sbjct: 62  LAHTASNMTTTHPDYSKLAARIAVTNLHKLTSPKFSEVCKRL-----------WFNVNPD 110

Query: 262 EGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            G++A L+ +   +        L   +++  DF + Y G + L   Y L      IE PQ
Sbjct: 111 TGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQ 170

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
              MR A+ +           ++ Y  LSS +F  ++PTLFNS +  PQLSSCFL  +  
Sbjct: 171 HTLMRCALQIHGD---NIDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKS 227

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI   ++  A+++K++GGLG   + +RG GA+I GTNG S G++P L++ N     
Sbjct: 228 DSMEGIADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERM 287

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA+  Y+E WH+DV +FL+LRKNTG D +RT D+  A WIPDLFM+RV   
Sbjct: 288 VDQGGNKRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDG 347

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P     L +++G EFE  Y  YE      E K  R + A  LW  +L    ET
Sbjct: 348 GEWSLMCPASCPGLDEVWGPEFEALYTRYEA-----EGKARRTVKARDLWNSVLVAQLET 402

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
           G P++ +KD CN +S  QH+G +  SNLCTEI   ++SEE AVCNL S+ L         
Sbjct: 403 GGPFMLYKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIA 462

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               ++D+  LA  +R   R L+ VID N + + +A +SN  HR IG+G+ G      ++
Sbjct: 463 EDPYEYDFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMM 522

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            IP+   +A ++     E I + A+  S +LAQ  G Y +++GS   +G+   D  GL  
Sbjct: 523 GIPFTCGKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKR 582

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E       + +    W+EL+ R++  G+RNS  ++  PTA+ A I G ++SI+P   NLY
Sbjct: 583 E-------DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLY 635

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN  LV  L++  LW++ M + L  H GS+ NIE  P+ LK I+ TA+E
Sbjct: 636 QRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYE 695

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL----DEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           I    LI  A+ R  ++DQ+QSLNL+L     +   KKL  ++  AW  GLKT  YYLR+
Sbjct: 696 ISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRT 755

Query: 906 RSATSVEKSTLKGV-DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           ++A +  + ++      + +     +  S+           ++  C +C
Sbjct: 756 KAAVAPVQFSVAPEVSAEASRKRRAEDGSAFSKQPKLEVVCNEEVCTMC 804


>gi|68629683|gb|AAY99446.1| ribonucleotide reductase [Cyprinid herpesvirus 3]
          Length = 806

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/829 (32%), Positives = 430/829 (51%), Gaps = 43/829 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              + +   DGT    +  ++   + E     + V  +++  +    + +G   S+++  
Sbjct: 2   EDTIYVTKRDGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDEL 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           L  ++  +    P+Y+K+ AR  +  L +       +  ++            +F    +
Sbjct: 62  LAHTASNMTTTHPDYSKLAARIAVTNLHKLTSPKFSEVCKRL-----------WFNVNPD 110

Query: 262 EGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            G++A L+ +   +        L   +++  DF + Y G + L   Y L      IE PQ
Sbjct: 111 TGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQ 170

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
              MR A+ +           ++ Y  LSS +F  ++PTLFNS +  PQLSSCFL  +  
Sbjct: 171 HTLMRCALQIHGD---NXDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKS 227

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI   ++  A+++K++GGLG   + +RG GA+I GTNG S G++P L++ N     
Sbjct: 228 DSMEGIADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERM 287

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA+  Y+E WH+DV +FL+LRKNTG D +RT D+  A WIPDLFM+RV   
Sbjct: 288 VDQGGNKRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDG 347

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P     L +++G EFE  Y  YE      E K  R + A  LW  +L    ET
Sbjct: 348 GEWSLMCPASCPGLDEVWGPEFEALYTRYEA-----EGKARRTVKARDLWNSVLVAQLET 402

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
           G P++ +KD CN +S  QH+G +  SNLCTEI   ++SEE AVCNL S+ L         
Sbjct: 403 GGPFMLYKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIA 462

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               ++D+  LA  +R   R L+ VID N + + +A +SN  HR IG+G+ G      ++
Sbjct: 463 EDPYEYDFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMM 522

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            IP+   +A ++     E I + A+  S +LAQ  G Y +++GS   +G+   D  GL  
Sbjct: 523 GIPFTCGKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKR 582

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E       + +    W+EL+ R++  G+RNS  ++  PTA+ A I G ++SI+P   NLY
Sbjct: 583 E-------DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLY 635

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN  LV  L++  LW++ M + L  H GS+ NIE  P+ LK I+ TA+E
Sbjct: 636 QRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYE 695

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL----DEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905
           I    LI  A+ R  ++DQ+QSLNL+L     +   KKL  ++  AW  GLKT  YYLR+
Sbjct: 696 ISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRT 755

Query: 906 RSATSVEKSTLKGV-DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           ++A +  + ++      + +     +  S+           ++  C +C
Sbjct: 756 KAAVAPVQFSVAPEVSAEASRKRRAEDGSAFSKQPKLEVVCNEEVCTMC 804


>gi|50549777|ref|XP_502360.1| YALI0D03333p [Yarrowia lipolytica]
 gi|49648228|emb|CAG80548.1| YALI0D03333p [Yarrowia lipolytica]
          Length = 849

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/812 (31%), Positives = 416/812 (51%), Gaps = 35/812 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203
           + ++   G     +  +    +   C  L  V S+  +  +T    +DG+S  +L     
Sbjct: 1   MHVVKRGGQREPMDMAKFTRRLTALCFNLSSVVSATEIAQKTVDGAFDGVSTVELNNLAS 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  L+ + P+Y  + AR  +  L ++         Q+   ++ +           E  
Sbjct: 61  ETAAALMTRHPDYGVLAARLSVSNLHKQTSDKFVNVMQQLYDNKDETG---------EHA 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
               L            L   + Y RD  + Y G + L   Y L + G+ +E PQ   MR
Sbjct: 112 PLVTLALLERAQNHGETLELAISYYRDMTYSYFGFKTLEKSYLLRVGGNVVERPQHMLMR 171

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           VA+G+   +  K     E Y  LS   F  ++PTLFN+GT   QLSSCFL  +  D + G
Sbjct: 172 VALGIHGDDIFKV---RETYQALSLRKFTHASPTLFNAGTPQGQLSSCFLVAMAADSIDG 228

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I+  L+  A ++K +GG+G     +R  GA I G+ G+S G++P L+V N+TA  V+QG 
Sbjct: 229 IYDTLKTCAQISKTAGGIGLHIHNIRAKGALITGSQGRSSGIVPMLRVFNNTARYVDQGG 288

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA   YLE WH D+ +FL+LRKN G +  R  D+  A W+PDLFM++V     W+L
Sbjct: 289 NKRPGAFAVYLEPWHADILDFLNLRKNHGAEENRARDLFYALWVPDLFMRKVENGEKWSL 348

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +   L D++G+EF+  YE+YE      +     +I A  L++ +LT   ETG P++
Sbjct: 349 FCPRKAPGLADVWGEEFDRKYEDYE-----SKGLYNSQIDAQELFKAILTSQIETGGPFM 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFD 617
            +KD CN +S Q+++G + SSNLCTEI   SS +E AVCNL S+ L        ++  ++
Sbjct: 404 LYKDSCNAKSNQKNLGTIKSSNLCTEIVQYSSPDEVAVCNLASVALPEFVQLKGSSGSYN 463

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           + +L  T++   R L+ +I+ NC+ +++A+ SN  HR I +G+ G       L +P+ SP
Sbjct: 464 FGELHETVKHMTRNLNCIIEANCYPVKEAETSNKRHRPIAVGVQGLADVFMKLRMPFDSP 523

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E+     E I   A  AS+ELA E G Y +++GS   QG    D             
Sbjct: 524 EAAELNVLIFETIYHAACEASIELAAELGPYETYEGSPASQGKLQFDLWNKTP------- 576

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W  LK ++   GMRNS  +A  PTA+ + I G ++  +P   N+Y++   +G
Sbjct: 577 ---SDLWDWARLKTKLAKHGMRNSLLVAPMPTASTSQILGHNECFEPYTSNIYLRRVQAG 633

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN +L+ +L +  +W E M + + + +GSI +I +IP+ ++ ++ TA+EI    +I
Sbjct: 634 EFLVVNQWLMKDLIKLGMWTEEMKNRIIHDNGSIQSITQIPEHIRAVYRTAWEIKARNII 693

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN+++ E +  K+  ++   W  GLKT  YYLR+  A    + T+
Sbjct: 694 DMAAARAPYIDQSQSLNIFMPEITHGKITAMHFHGWKAGLKTGMYYLRTPPAAHAIQFTV 753

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                +    PV + +   +        +   
Sbjct: 754 DKTLLQNIQDPVGEVDPVVYEPPSMPWASESP 785


>gi|327287998|ref|XP_003228715.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Anolis carolinensis]
          Length = 745

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/818 (33%), Positives = 419/818 (51%), Gaps = 84/818 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVVKRDGRHERVMFDKITSRIQKLCYGLNVDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYTYVNPHNSKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L IN    E PQ   M
Sbjct: 113 SPMIAKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+   +      A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIHKND---IDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKHCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHFDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V R + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRRVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + +KD CN +S QQ++G +  SNLCTEI   +S++E  V                     
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSNDEAEV--------------------- 443

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
                                       SN  HR IG+G+ G   A  L+  P+ SPEA 
Sbjct: 444 ----------------------------SNKRHRPIGIGVQGLADAFILMRFPFESPEAQ 475

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E I + A+ AS  LA+E G Y +++G    +G+   D   ++           
Sbjct: 476 LLNQQIFETIYYAALEASCNLAKECGPYETYEGCPLSKGILQYDMWNVVP---------- 525

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F 
Sbjct: 526 TDLWDWKALKEKIAKHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQ 585

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  L+ +L +R LW+E M + +   +GSI  I  IPDDLK ++ T +EI    +++ A
Sbjct: 586 IVNPHLLKDLTERGLWNEEMKNQIIACNGSIQTIPEIPDDLKLLYKTVWEISQKTVLKMA 645

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL   
Sbjct: 646 ADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKE 705

Query: 920 DGKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVC 953
                   + +         +   +  S  +  EC +C
Sbjct: 706 KLNKEKSSIGEEEEEAKKERNKAAMVCSLENRDECLMC 743


>gi|289582311|ref|YP_003480777.1| ribonucleoside-diphosphate reductase, subunit alpha [Natrialba
           magadii ATCC 43099]
 gi|289531864|gb|ADD06215.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrialba
           magadii ATCC 43099]
          Length = 836

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/828 (48%), Positives = 542/828 (65%), Gaps = 41/828 (4%)

Query: 162 LEMIVEEACSGLQDV----SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217
           +E +++ A +G ++V        + +E  +N+YDG S  +   A++ +    IE+EP Y 
Sbjct: 15  IESVLDRAQTGTEEVLSPAERDQLATEIERNLYDGASPDECYQAILQALTARIEREPTYK 74

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-F 276
           ++ A    ++  R VL       +  T   ++  Y + F   +E  V+  LL E +++ F
Sbjct: 75  QLAAAVFRQRYYRTVLG------EDLTGAALETAYRDTFVTNLERAVELDLLDERLLERF 128

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETE 334
           DL  LA  L+ ERD  FEY+ ++ L  RYFL    NG  +E+PQAF+MRVAMGLAL+E +
Sbjct: 129 DLEKLAAALELERDEQFEYMAMETLTQRYFLKTEENGEHLELPQAFWMRVAMGLALEEDD 188

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            ++RA+EFY++LS+  F  STPTLF+SG+ HPQLSSC+LTTV D L  IF + + +A L+
Sbjct: 189 PQQRALEFYDVLSALEFTPSTPTLFHSGSTHPQLSSCYLTTVQDSLENIFDSYKHHAQLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K+SGGLGNDWT +R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+GA CAYL  
Sbjct: 249 KWSGGLGNDWTNLRSAGALIESTGVESTGVVPFLRISNDVTSAINRSGKRRGAACAYLAC 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D   F DL++NTGD+RRRT DMNTA WIPDLFMKRV  +  WTLFSPDEV +LHDL 
Sbjct: 309 WHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEADEEWTLFSPDEVPELHDLS 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+ FE  Y  YERQAD GE++ + ++ A  LWR MLT LFETGHPW+TFKDPCN+RSPQ 
Sbjct: 369 GEAFEERYCEYERQADNGELRQYERVDAAELWRTMLTRLFETGHPWLTFKDPCNVRSPQD 428

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           HVG VHSSNLCTEITLN+S++E AVCNLGS+NL  H ++ + D + LA TI TA+R+LDN
Sbjct: 429 HVGTVHSSNLCTEITLNTSADEHAVCNLGSVNLATHVSDGELDREHLADTIETAMRMLDN 488

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+D+  +  E+AK+SN  HR +GLG MGF  AL  L IP  S +AVE A+   EF+S+HA
Sbjct: 489 VVDLCFYPTEEAKRSNMRHRPVGLGTMGFHDALMELGIPMDSEDAVEAANRWQEFVSYHA 548

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753
           I  S +LA ERGAY S++GS WD+G+ P D++ LL + RD E+  +R   L W  +++ V
Sbjct: 549 ILNSSKLAGERGAYPSYEGSKWDRGLLPQDTVDLLEDERDREIPTDREETLEWATVREHV 608

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFTV+N  LV +LK R
Sbjct: 609 AEHGMRNSNTMAIAPTATVSTINGTTPSIEPIYSNLYVKSNMSGDFTVINDKLVADLKAR 668

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           D WD+ M+  LK+HDGS+  I+ +PDDL++++  AFEIDP   +   + RQ WIDQ+ S 
Sbjct: 669 DRWDDEMVDRLKFHDGSVQEIDTVPDDLQELYRGAFEIDPRHQLRLTAHRQTWIDQSVSH 728

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----------GVDGKL 923
           N++     G  LD +YR AW +GLKTTYYLR+  A+ +EKSTL             D   
Sbjct: 729 NVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTLDMGEYGKTQHRDSDSAA 788

Query: 924 NAVPVTDPNSSTHSLGIPS-----------------SCTSDTECEVCQ 954
                 D +++T S   P                      D  CE CQ
Sbjct: 789 RFDGDDDDSTNTDSDPDPGSGSDTDSDSDPGSGDELCRVDDPTCEACQ 836


>gi|313768128|ref|YP_004061559.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599735|gb|ADQ91756.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 748

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/780 (34%), Positives = 421/780 (53%), Gaps = 43/780 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           +++    G +       +   + +   GL + V    +  + + ++YDG+   +++T   
Sbjct: 1   MRVTKRSGRVEDVKFDNVTNRISKLTEGLSETVDVTKIAQQVFSSIYDGIKTPEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R     +++      +   +K     +           +++ 
Sbjct: 61  EICIGMITSDPDYEILATRITASNIQKRAANNFHIAMRKLHKAGIVTHEVLEVSSKVKDD 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                                +K ERDF F Y GL+ L   Y   I+G  IE PQ  +MR
Sbjct: 121 ---------------------IKPERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYLYMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382
           VA+G+   +       +E Y  LS   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHGHD---IDHVLETYEALSKGLFIHATPTLFNAGTPRPQMSSCFLIANKEDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  ++E A ++K++GG+G     VR   +HI GTNG S G+IP L+V N TA  VNQ G
Sbjct: 217 IYDTVKECARISKWAGGIGLHVHDVRANKSHIRGTNGTSDGIIPMLRVYNSTARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL++R N GD+  R  D+ +A WIPDLFMKRV  +  W+LF
Sbjct: 277 RRKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESDGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D+YGKEFE  YE YE      E    + + A  +W+ ++    ETG P++ 
Sbjct: 337 CPDQAKGLSDVYGKEFEDLYEKYE-----SEGIATKVVPASEIWKAIIKSQSETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620
           +KD CN +S  +HVG + SSNLCTEI   +  EETAVCNL SI L  +     N+F++++
Sbjct: 392 YKDACNEKSNHKHVGTIKSSNLCTEILEFTDKEETAVCNLASIALPKYVDVEKNEFNHEE 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   R L+ VID N +  E  K+SN  HR IG+G+ G      +L + + S E+ 
Sbjct: 452 LHRVTKMVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESR 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++  +  E I   ++ +S ELA+  G Y +FKGS + +G+   D      +         
Sbjct: 512 KLNIDIFETIYHASLESSCELAEMYGPYETFKGSPFSKGILQFDMWDRDPKFSG------ 565

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
             R  W+ ++K VK  G  NS  +A  PTA+ + I G ++  +P   N+Y++  ++G+F 
Sbjct: 566 --RYDWNAMRKLVKK-GTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFV 622

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LVN+LK+R LW + M   +   +GS+ NI  IPDDLK+++ T +E+    +I+ A
Sbjct: 623 VVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMA 682

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++ +   + +L+  
Sbjct: 683 ADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLEAE 742


>gi|269963258|ref|ZP_06177591.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832006|gb|EEZ86132.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 752

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/812 (34%), Positives = 440/812 (54%), Gaps = 65/812 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG     +  ++    E    GL+ V    V       +YDG+  ++++  L  
Sbjct: 1   MDVIKRDGRKEKASLDKVTRRAEALADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAE 59

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +L  + P+YAK+ AR ++  L++E         + +    +   Y ++  +      
Sbjct: 60  TAASLATEHPDYAKLAARVMVSSLQKETSGYATATRELSEIGILSDTYVDFAAK------ 113

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                       +   L   + Y+RD+ F+Y G + L   Y L + G  +E PQ  FMRV
Sbjct: 114 ------------NQFALEEMIDYKRDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRV 161

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383
           A+ +A  +    +   E Y+LLS  ++  +TPTLFN+G +  QLSSCFL  +  D + GI
Sbjct: 162 AVAVAGDD---LEEIRELYDLLSHGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGI 218

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           +  L++ A+++K +GG+G     +R  GA I GTNG S G++P LKV N+TA  V+QGG 
Sbjct: 219 YDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGG 278

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKG+   YLE WH D+E FLDLRKN G +  R  D+  A W+PDLFM+RV  +A WTLF
Sbjct: 279 KRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLF 338

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP     L DLYG EF   Y+ YER          + I A  L  +++    ETG P++ 
Sbjct: 339 SPHNTKGLSDLYGAEFTQKYQEYERMGL-----GVKTIKARQLMTQIIESQAETGTPYML 393

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN +S Q+++G + SSNLC EI   S+ +ETA CNL S+ L     ++ FD+DKL 
Sbjct: 394 YKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVTDSGFDFDKLH 453

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              + A++ LD VID+N H  +K +KSNH HR +GLG+ G       +H+P+ S EA+++
Sbjct: 454 QVTKVAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQL 513

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E +   ++ AS E+A ++GAYSS+ GS    G F  D                +S
Sbjct: 514 NRDIAETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWDEQP----------SS 563

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R  W +LK+++   G+RNS  +A  PTA+ A I G +++ +    N+Y +  +SG+F ++
Sbjct: 564 RWDWSQLKRQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIII 623

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV++L+QR LW   +   +  ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ 
Sbjct: 624 NKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAA 683

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921
           R  ++ Q+QSLNL+L  P+  +++ ++  AW  GLKT  YYLRS+ +T+  K T+     
Sbjct: 684 RAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTVGQQ-- 741

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                  + D +C  C
Sbjct: 742 -----------------------SEDEDCLNC 750


>gi|117928931|ref|YP_873482.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
           cellulolyticus 11B]
 gi|117649394|gb|ABK53496.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
           cellulolyticus 11B]
          Length = 781

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/815 (39%), Positives = 465/815 (57%), Gaps = 39/815 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   +G     +  ++   VE     L DV    V ++T   +YDG + ++L+   I 
Sbjct: 1   MRVRKRNGDTEPVDVNKIVRAVERWADDLTDVDPLRVATKTISGLYDGATTAELDRLSIQ 60

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y+K+ AR L   + +EV    + +   +    +   + E          
Sbjct: 61  TAAELIAEEPQYSKLAARLLAAYIEKEV----HNQGIASFSQSIALGHAEGL-------- 108

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322
                    +  +       +  + D  FEY GL+ +YDRY L    SR  IE PQ F +
Sbjct: 109 -IGDETARFVKDNARKFDFAIDPKGDQRFEYFGLRTVYDRYLLRHPTSRLVIETPQYFLL 167

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA GLA    E    A+EFY L+S   ++ S+ TLFNSGTRHPQ+SSC+L   P D+L 
Sbjct: 168 RVACGLARTPAE----AIEFYRLMSELAYLPSSATLFNSGTRHPQMSSCYLVDSPRDELD 223

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+    + A L+K++GG+G  ++ VR  GA I GTNG S G++PFLK  + +  AVNQG
Sbjct: 224 SIYARYHQVARLSKFAGGIGIGFSRVRSRGALIRGTNGHSNGIVPFLKTLDASVAAVNQG 283

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+RKGA C YLE WH D+EEFL+LR NTG+D RRT+++N ANWIPD FM+RV  +  W+L
Sbjct: 284 GRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADELWSL 343

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             PD+  +L DL+G +F+ AY   E      E +  R++ A  L+ KM+  L ETG+ W+
Sbjct: 344 IDPDQAPELVDLWGADFDAAYRRAEA-----EGRYVRQVRARDLYAKMMRTLAETGNGWM 398

Query: 562 TFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           TFKD CN +  Q  +   VVH SNLCTEI   +  +E AVCNLGSINL  H  +   D+D
Sbjct: 399 TFKDACNAKCNQTGRPGNVVHLSNLCTEIVEVNRDDEIAVCNLGSINLARHVRDGAVDWD 458

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +L  T++ AV +LD V+DIN +   +A +SN   R IGLG+MG Q     L +P+ S EA
Sbjct: 459 RLRRTVQIAVPLLDRVVDINFYPTPEAARSNEKWRPIGLGVMGLQDVFFALRLPFDSGEA 518

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +E++    E I   A+  S ELA E G + +F  +    G    D  G+           
Sbjct: 519 LELSTRIAEEIYLTALEVSAELAAEYGPHPAFPETRAAAGYLQPDLWGVTP--------- 569

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T +  +  +K+R+  +G+RNS  +AIAPTATIA+I G  +SI+P   NL+ +  +SG+F
Sbjct: 570 -TQQERYAAIKERIAAVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRETLSGEF 628

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN+ LVNELK R LW + +   +K  DGS+  +  +P++++++  TA+E+    LI+ 
Sbjct: 629 LQVNTALVNELKTRGLWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQKALIDL 688

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+ R  +IDQ+QSLNL++  P+  KL  +YR AW  GLKTTYYLRSR AT ++++T+   
Sbjct: 689 AAARGPYIDQSQSLNLFMAAPTISKLSSMYRYAWASGLKTTYYLRSRPATRIQQATVTVT 748

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               + V     N ST       S  +   CEVCQ
Sbjct: 749 SS--DDVRDVMANPSTSKPATSCSLENPETCEVCQ 781



 Score = 39.1 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMK 52
          ++V KRNG     D +KI RA+ +
Sbjct: 1  MRVRKRNGDTEPVDVNKIVRAVER 24


>gi|115378662|ref|ZP_01465812.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364328|gb|EAU63413.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 800

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/835 (38%), Positives = 475/835 (56%), Gaps = 59/835 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +++   +G+    +  ++   V   C+GL  V +  V ++T   +YDG +  +L++  I
Sbjct: 1   MMRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSI 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  LI +EP YA+++AR L   +++EV                       F + +  G
Sbjct: 61  QTAAALIVEEPEYARLSARLLDTFIQKEVSNQEI----------------HSFSQSVAAG 104

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318
            K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L        IE PQ
Sbjct: 105 HKHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQ 164

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
            FF+RVA  L     +    A+E Y L SS  ++ S+PTLFN+GTRH QLSSCFL   P 
Sbjct: 165 DFFLRVACALTDTAKD----AIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPS 220

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  A
Sbjct: 221 DELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAA 280

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV  + 
Sbjct: 281 VNQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQ 340

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P  V  L DLYG+ FE AY   E Q         RK+ A  L+ +M+  L +TG
Sbjct: 341 EWSLFDPKTVPHLTDLYGEAFERAYAAAEAQGLA-----ARKVKARDLYARMMKTLAQTG 395

Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           + W+TFKD  N +S Q  +   V+H SNLCTEI   +++ ETAVCNLGS+NL    ++ +
Sbjct: 396 NGWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGK 455

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+++L   ++ A+R LD VID+N + I  A  SN   R +GLGLMG Q     L +P+ 
Sbjct: 456 FDFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFD 515

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +PEA  ++ +  E I F A++ S +LA++ G + +F  +    G    D+ G++ E    
Sbjct: 516 APEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPEDTAR 575

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L++R++  G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +
Sbjct: 576 ----------WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETL 625

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF  VN +LV EL+   LW++AM S LK  +GS+ ++  +P +LK I+ TA+E+    
Sbjct: 626 SGDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRS 685

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+QSLNL+++ P+  K+  +Y  AW  GLKTTYY+RSR AT + K+T
Sbjct: 686 LIDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTT 745

Query: 916 LKGVDGKLNAVPVT----------------DPNSSTHSLGIPSSCTSDTECEVCQ 954
           +    G+  +V                        T +  +  S  +   CE CQ
Sbjct: 746 VDTSHGQNASVAPNMPVASAAPAAPAPTVTAEPKYTEAEALACSLENPEMCEACQ 800


>gi|310823069|ref|YP_003955427.1| ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396141|gb|ADO73600.1| Ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 841

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/835 (38%), Positives = 475/835 (56%), Gaps = 59/835 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +++   +G+    +  ++   V   C+GL  V +  V ++T   +YDG +  +L++  I
Sbjct: 42  MMRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSI 101

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  LI +EP YA+++AR L   +++EV                       F + +  G
Sbjct: 102 QTAAALIVEEPEYARLSARLLDTFIQKEVSNQEI----------------HSFSQSVAAG 145

Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318
            K  L+ + ++ F   +   L   +   R+  FEY GL+ +YDRY L        IE PQ
Sbjct: 146 HKHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQ 205

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
            FF+RVA  L     +    A+E Y L SS  ++ S+PTLFN+GTRH QLSSCFL   P 
Sbjct: 206 DFFLRVACALTDTAKD----AIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPS 261

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I+    + AML+K+SGG+G  +  VR  G+ I  TNG S G++P+LK  + +  A
Sbjct: 262 DELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAA 321

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV  + 
Sbjct: 322 VNQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQ 381

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P  V  L DLYG+ FE AY   E Q         RK+ A  L+ +M+  L +TG
Sbjct: 382 EWSLFDPKTVPHLTDLYGEAFERAYAAAEAQGLA-----ARKVKARDLYARMMKTLAQTG 436

Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           + W+TFKD  N +S Q  +   V+H SNLCTEI   +++ ETAVCNLGS+NL    ++ +
Sbjct: 437 NGWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGK 496

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+++L   ++ A+R LD VID+N + I  A  SN   R +GLGLMG Q     L +P+ 
Sbjct: 497 FDFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFD 556

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +PEA  ++ +  E I F A++ S +LA++ G + +F  +    G    D+ G++ E    
Sbjct: 557 APEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPEDTAR 616

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L++R++  G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +
Sbjct: 617 ----------WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETL 666

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SGDF  VN +LV EL+   LW++AM S LK  +GS+ ++  +P +LK I+ TA+E+    
Sbjct: 667 SGDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRS 726

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+QSLNL+++ P+  K+  +Y  AW  GLKTTYY+RSR AT + K+T
Sbjct: 727 LIDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTT 786

Query: 916 LKGVDGKLNAVPVT----------------DPNSSTHSLGIPSSCTSDTECEVCQ 954
           +    G+  +V                        T +  +  S  +   CE CQ
Sbjct: 787 VDTSHGQNASVAPNMPVASAAPAAPAPTVTAEPKYTEAEALACSLENPEMCEACQ 841



 Score = 43.7 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 4  SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          +   +        S      +    ++V KRNG     D +KI RA+ +
Sbjct: 18 TPMKSPATPPLAMSAVTASEQGPTMMRVRKRNGSSEPVDLNKIVRAVGR 66


>gi|261334781|emb|CBH17775.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 838

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/801 (35%), Positives = 424/801 (52%), Gaps = 29/801 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204
           +   DG++  ++ K +   +    SG+      +        + + +G+S S L+  L  
Sbjct: 8   VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y  +  R  +  L +    +V            + L+            
Sbjct: 68  TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDS--------FRVLHEHVSQATKRHAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319
                   + +     L   + YERDF FEY G + L   Y L ++  R     +E PQ 
Sbjct: 120 LISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVDKGRGVMEVVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
            F+RVA+G+  ++ E+     E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFLRVALGIHGEDLERV---KETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D+    WIPDLFM+RV  + 
Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EF   YE YER     E +  R I A  LW  +L    ETG
Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYER-----EGRGVRTIQAQELWFLILESQVETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S Q+++G +  SNLCTEI   +S +E AVCNL SI L     +  FD
Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y  L    +   R L+ VID N + + +A+ SN  HR +G+G+ G   A  LL +P+A P
Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHP 531

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I F A+ AS ELA++ G Y +FKGS   +G    D       +R    
Sbjct: 532 EAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591

Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               +      WD LK+RV  +GMRNS  +A  PTA+ + I G ++ I+P   N+YV+  
Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRV 651

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  LV EL +  LW++ M   +   +GS+  I+ IP+ +++++   +EI   
Sbjct: 652 LSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +W  GLKT  YYLRS+ A    K
Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771

Query: 914 STLKGVDGKLNAVPVTDPNSS 934
            TL     K    P       
Sbjct: 772 FTLDPKAMKELPKPDKQSKEE 792


>gi|302793891|ref|XP_002978710.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
 gi|300153519|gb|EFJ20157.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
          Length = 786

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/787 (33%), Positives = 426/787 (54%), Gaps = 45/787 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++    L        IV  +    +Y G++ S L+   
Sbjct: 1   MYVIKRDGKQEAVHFDKITARLKKLSYSLNPDYCDPVIVAQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++    P+YA + AR ++  L ++   +  +  ++   H  +    +     I  
Sbjct: 61  AETAASMTTSHPDYAILAARIVVSNLHKKTKKSFSETVKEMYSHVDERSGLK--APLIAN 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   ++       +   L +++ Y+RDF ++Y G + L   Y L +NG  +E PQ   M
Sbjct: 119 DVYDIIM------KNAAKLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGRVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RV++G+     E  + A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  +  D + 
Sbjct: 173 RVSVGIH---KEDIEAAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R   ++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRATNSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G ++            DV ++LDL+KN G +  R  D+    WIPDLFM+RV  N+ W+L
Sbjct: 290 GGKRK-----------DVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWSL 338

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P+E   L D +G+EFE  Y  YER     E +  R +SA  LW  +L    ETG+P++
Sbjct: 339 FCPNEAPGLADCWGEEFESLYTRYER-----EGRAKRSLSAQKLWFAILESQMETGNPYM 393

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD-- 619
            FKD CN +S QQ++G +  SNLCTEI   +S  ETAVCNL SI L         + +  
Sbjct: 394 VFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSPSETAVCNLASIALPRFVREQGINSETK 453

Query: 620 --KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
                         L+ +IDIN + ++ AK+SN  HR IG+G+ G   A  LL +P+ S 
Sbjct: 454 LVDCFQVTTVVTENLNKIIDINYYPVDTAKRSNLRHRPIGIGVQGLADAFILLGLPFDSE 513

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I +HA+  S  LA+  G Y ++ GS   +GVF  D   ++        
Sbjct: 514 EARDLNKDIFETIYYHAMKTSSVLAELYGVYETYPGSPVSKGVFQPDMWNVIP------- 566

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              + R  W  LK+ V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 567 ---SGRWDWPALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 623

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+N+L    +W   + + +  ++GSI +IE IPDDLK+I+ T +EI    ++
Sbjct: 624 EFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWEIKQRTIV 683

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT  YYLRS++A    K T+
Sbjct: 684 DMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTV 743

Query: 917 KGVDGKL 923
                K+
Sbjct: 744 DTASLKV 750


>gi|2244677|emb|CAA67423.1| ribonucleotide reductase [Spodoptera littoralis NPV]
          Length = 781

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/778 (33%), Positives = 425/778 (54%), Gaps = 32/778 (4%)

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             DG     + ++++  +E+ C GL    V+   +     + +Y G++  +L+  +  ++
Sbjct: 4   KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            ++     +Y+ + AR  +  L +E         +    + +  +Y     +        
Sbjct: 64  ASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              H  ++  +   L + + ++RDF ++Y G + +   Y   ING  +E PQ   MRVA+
Sbjct: 116 SDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385
           G+  ++      A+E YNL+S+ +F  ++PTLF++ T   Q+SSCFL  +  D + GI+ 
Sbjct: 176 GIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
            L++ AM++K  GG+G     VR  G+ + G +G + G++P L+V N+TA  VNQG  KR
Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA   Y+E WH DV +FLDL+KNTG +  R  ++  A WIPDLFM+RV  +A W+L  P
Sbjct: 293 PGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +   L  +   EFE  YE YE+Q      +  +++SA  LWR ++    ETG P++ +K
Sbjct: 353 MQSPGLAIVTVFEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYMLYK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622
           D CN +S Q ++G +  SNLCTEI   +S +E AVCNL SI +    A     +D+++L 
Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++  R L+ +ID N   + +A++SN  +R IG+G+ G   A   + +P+ S  A E+
Sbjct: 468 EITKSCDRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPFESDAAAEL 527

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ A+ ELA + G Y ++KGS   +G    D                ++
Sbjct: 528 NKKIFETIFYGALEANCELAAKDGPYETYKGSPASRGELQYDMWN---------GATPSN 578

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK ++   G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VV
Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L    LW++ M + + Y++GS+ NIE IP ++++++ T +E+    +I  A+ 
Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           R  +IDQ+QS N+Y+ EPS  KL  I+  AW MGLKT  YYLR++ A +  + T+   
Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNSIQFTVDKN 756


>gi|225873705|ref|YP_002755164.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791715|gb|ACO31805.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 792

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/826 (40%), Positives = 478/826 (57%), Gaps = 57/826 (6%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P + +   +G L   +  ++   V+   +GL  V +  V S+T   +YDG +  
Sbjct: 16  PAKEEIPVMHVRKRNGELEPVDVNKIVRAVQRCSAGLSQVDAIRVASKTIGGLYDGATTR 75

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+   I ++ +LI +EP Y+K+ AR LL  + +EV                       F
Sbjct: 76  ELDAISIDTAASLIAEEPQYSKLAARLLLGTILKEVAGQNL----------------HSF 119

Query: 257 CRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--G 311
            + IE   +  +++ +  +F       L   +  +    FE+ GL+ +YDRY L      
Sbjct: 120 SQSIEYAHQEGVVNAATAEFVRTHARKLNYAIDEQLSDRFEFFGLRTVYDRYLLRDPLSR 179

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             IE PQ FF+RVA GLA         A+EFY L++S  +M S+PTLFNSGT+HPQ+SSC
Sbjct: 180 KVIETPQYFFLRVACGLAGTP----HEAIEFYRLIASHDYMPSSPTLFNSGTKHPQMSSC 235

Query: 372 F-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           +   +  D L  I+   ++ A+L+K+SGG+G  +  VR  G+ I  TNG S G++P+L+ 
Sbjct: 236 YLHDSPSDSLESIYDTYKDVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRT 295

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +  AVNQGGKRKGA C YLE WH DVE+FL+LR+NTGD  RRT+++N ANWIPDLFM
Sbjct: 296 LDSSVAAVNQGGKRKGACCVYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFM 355

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV ++  W+LF P  V  L DLYG EF+ AYE  E      E    R+I A  L+ +M+
Sbjct: 356 RRVEEDGMWSLFDPKVVPQLPDLYGVEFDAAYEKAEA-----EQLYARQIKARDLYARMM 410

Query: 551 TMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
             L ETG+ W+TFKD CN++  Q  +   VVH SNLCTEIT  +S +ETAVCNLGSINL 
Sbjct: 411 RSLAETGNGWMTFKDACNLKCNQTGKPGNVVHLSNLCTEITEVTSRDETAVCNLGSINLA 470

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            H AN  FD++KLA T+R AV +LD VIDIN + + +A  +N   R +GLGLMG Q    
Sbjct: 471 RHVANGAFDFEKLAETVRVAVPMLDRVIDINYYPVHQAASANSRWRPVGLGLMGLQDVFF 530

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ SPEA +++    E I +HA++AS ELA+++GA+ +F  +    G    D  G+
Sbjct: 531 QLRMPFDSPEAQQLSTHIQEEIYYHALAASCELAEKQGAHPAFAETRLAAGQLQFDLWGV 590

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                            W+ L+ R++  G+RNS  +AIAPTATIA+I G  +  +P   N
Sbjct: 591 KPADEAR----------WNTLRARIQQHGVRNSLLIAIAPTATIASIVGCYECTEPQVSN 640

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+ +  +SG+F  VN +LV +LK+R LW+E +   LK  +GS+  I+ IPDDLK+I+ T 
Sbjct: 641 LFKRETLSGEFLQVNRYLVTDLKERGLWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTV 700

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +E+    +I+ A  R  +IDQ+QSLNL+ + P+  +L  +Y  AW  GLKTTYYLRSR A
Sbjct: 701 WELPMRAIIDLARERSPFIDQSQSLNLFAESPNIGRLSSMYMYAWKSGLKTTYYLRSRPA 760

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T + K+T+               ++   +  +  S  +   CE CQ
Sbjct: 761 TRIAKTTV--------------ASAKNATAAVACSLENPGSCEACQ 792



 Score = 41.8 bits (96), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
           +P  E+I  + V KRNG +   D +KI RA+ +
Sbjct: 14 GFPAKEEIPVMHVRKRNGELEPVDVNKIVRAVQR 47


>gi|163801386|ref|ZP_02195285.1| hypothetical protein 1103602000598_AND4_10974 [Vibrio sp. AND4]
 gi|159174875|gb|EDP59675.1| hypothetical protein AND4_10974 [Vibrio sp. AND4]
          Length = 752

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/812 (34%), Positives = 437/812 (53%), Gaps = 65/812 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG     +  ++    E    GL+ V    V       +YDG+  ++++  L  
Sbjct: 1   MDVIKRDGRKEKASLDKVTRRAEMLADGLK-VEPIAVAQRVVSGLYDGIKATEIDVFLAE 59

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +L  + P+YAK+ AR ++  L++E         + +    +   Y  +  R      
Sbjct: 60  TAASLATEHPDYAKLAARVMVSSLQKETNGYAAATSELSEIGILSDAYVNFVARNQLA-- 117

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                           L + + Y+RD+ F+Y G + L   Y L + G+ +E PQ  FMRV
Sbjct: 118 ----------------LEDMIDYKRDYQFDYFGYKTLERSYLLKVKGAVVERPQDMFMRV 161

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383
           A+ +A  +    +   E Y+LLS  ++  +TPTLFN+G +  QLSSCFL  +  D + GI
Sbjct: 162 AVVVAGDD---LEEIRELYDLLSLGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSIDGI 218

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           +  L++ A+++K +GG+G     +R  GA I GTNG S G+IP LKV N+TA  V+QGG 
Sbjct: 219 YDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNGVSNGIIPMLKVFNETARYVDQGGG 278

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKG+   YLE WH D+E FLDLRKN G +  R  D+  A W+PDLFM+RV  +A WTLF
Sbjct: 279 KRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMQRVENDAEWTLF 338

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP    DL +LYG EF   Y+ YER          + I A  L  K++    ETG P++ 
Sbjct: 339 SPHNTKDLSELYGSEFNRKYQEYERIGL-----GVKTIKARQLMTKIIESQTETGTPYML 393

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN +S Q+++G + SSNLC EI   S+ +ETA CNL S+ L     +  FD++KL 
Sbjct: 394 YKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASVALPKFVTDTGFDFEKLH 453

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              + A++ LD VID+N H   K +KSNH HR +GLG+ G       +H+P+ S EA+ +
Sbjct: 454 QVTKVAIKNLDRVIDVNYHPTNKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSKEALHL 513

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E +   ++ AS E+A+++G YSS+ GS   QG+F  D  G             +S
Sbjct: 514 NRDIAETMYHASLEASCEIAKQKGTYSSYDGSPISQGLFQFDLWGKQP----------SS 563

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
           R  W +LK ++   G+RNS  +A  PTA+ A I G +++ +    NLY +  +SG+F ++
Sbjct: 564 RWDWSQLKLKIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNLYKRQTLSGEFIIL 623

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  LV +L++  LW   +   +  ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ 
Sbjct: 624 NKHLVRDLEKNGLWTSKIRDAILLNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAE 683

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921
           R  ++ Q+QSLNL+L  P+  +++ ++  AW  GLKT  YYLRS+ + +  K T+     
Sbjct: 684 RAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSANAVKVTVGQQ-- 741

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                  + D +C  C
Sbjct: 742 -----------------------SEDEDCLNC 750


>gi|71755889|ref|XP_828859.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei]
 gi|70834245|gb|EAN79747.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei]
          Length = 838

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/801 (35%), Positives = 423/801 (52%), Gaps = 29/801 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204
           +   DG++  ++ K +   +    SG+      +        + + +G+S S L+  L  
Sbjct: 8   VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y  +  R  +  L +    +V            + L+            
Sbjct: 68  TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDS--------FRVLHEHVSQATRRHAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319
                   + +     L   + YERDF FEY G + L   Y L ++  R     +E PQ 
Sbjct: 120 LISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVDKGRGVMEVVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
            F+RVA+G+  ++ E+     E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFLRVALGIHGEDLERV---KETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D+    WIPDLFM+RV  + 
Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EF   YE YER     E +  R I A  LW  +L    ETG
Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYER-----EGRGVRTIQAQELWFLILESQVETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S Q+++G +  SNLCTEI   +S +E AVCNL SI L     +  FD
Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y  L    +   R L+ VID N + + +A+ SN  HR +G+G+ G      LL +P+A P
Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVREARYSNLRHRPVGIGVQGLADTFALLSLPFAHP 531

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I F A+ AS ELA++ G Y +FKGS   +G    D       +R    
Sbjct: 532 EAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591

Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               +      WD LK+RV  +GMRNS  +A  PTA+ + I G ++ I+P   N+YV+  
Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLVAPMPTASTSQILGNNECIEPFTSNIYVRRV 651

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  LV EL +  LW++ M   +   +GS+  I+ IP+ +++++   +EI   
Sbjct: 652 LSGEFPVVNKHLVKELIRLQLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +W  GLKT  YYLRS+ A    K
Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLGTPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771

Query: 914 STLKGVDGKLNAVPVTDPNSS 934
            TL     K    P       
Sbjct: 772 FTLDPKAMKELPKPDKQSKEE 792


>gi|42523461|ref|NP_968841.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
 gi|39575667|emb|CAE79834.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 801

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/834 (39%), Positives = 482/834 (57%), Gaps = 53/834 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
              A  +++   DGTL   +  ++   V + C GL  V    V ++    +YDG S  +L
Sbjct: 3   ETTAHIMRVKKRDGTLEPVDVTKIVERVTKNCQGLTQVDPLRVATKAISGLYDGASTKEL 62

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +   I ++  LI ++P Y+++ AR L   +  EV +                   + F  
Sbjct: 63  DNLCIQTASLLIGEDPEYSRLAARLLSTYIDEEVRSQKI----------------QSFAD 106

Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313
            +  G +A LL E    F   +   L   ++  R   FEY GL+ +YDRY L    +R  
Sbjct: 107 SVSFGYQAGLLAEHTYKFVETNKAALCAAIEPYRTDRFEYFGLRTVYDRYLLKNPTTRQV 166

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E PQ FFMRVA GLA       + A+EFY L+SS  +M STPTLFNSGT  PQ+SSC+L
Sbjct: 167 FETPQYFFMRVACGLAQS----VEEAIEFYRLISSHDYMPSTPTLFNSGTMRPQMSSCYL 222

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              P DDL  I+    + A+L+K++GG+G  ++ VR  G+ I GTNG S G+IP+LK  +
Sbjct: 223 LDSPSDDLSAIYQKYTDIALLSKFAGGIGVAYSRVRSRGSLIKGTNGHSNGIIPWLKTMD 282

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +  AVNQGGKRKGA C YLETWH D+EEFL+LR NTGD+ +R H++N ANW+PDLFMKR
Sbjct: 283 SSVAAVNQGGKRKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKR 342

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +A W+LF P  V    D YG+EFE AY   E      +    +++ A  L+ +M+  
Sbjct: 343 VEADAMWSLFDPKVVPHFVDTYGEEFEKAYVEAEE-----KKLYIKQLKARDLYSRMMKT 397

Query: 553 LFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           L +TG+ W+TFKD  N+++ Q      V+H SNLCTEI   +S +ETAVCNLGS+NL  H
Sbjct: 398 LAQTGNGWMTFKDHANLKANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLARH 457

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N QF+++KLA ++RTAV+ LD V+DIN + I  A+ SNH  R +GLG+MG Q AL L+
Sbjct: 458 VENGQFNFEKLARSVRTAVKYLDRVVDINFYPIPTAQDSNHKWRPVGLGVMGLQDALFLM 517

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S  A +++ +  E I ++A+  S EL+++ G + +F+ +   +G+   D  G+  
Sbjct: 518 KLPFDSAAARDLSAKVQEEIYYNALVTSCELSEKHGPHGAFEQTKAAKGLLQYDLWGVTP 577

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
              +             +LK+++K  G+RNS  +AIAPTATIA+I G  ++I+P   NL+
Sbjct: 578 SQPERFE----------KLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLF 627

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F  +N +LV++LK   +W E + +++K  DGSI ++  IP  +K+++ T +E
Sbjct: 628 KRETLSGEFMQINKYLVSDLKAMGIWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWE 687

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           I    L++ A+ R  +IDQAQSLNL+ + P+  KL  +Y  AW  G+KTTYYLRSR AT 
Sbjct: 688 IPMKSLVDMAADRGAYIDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKTTYYLRSRPATK 747

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG----------IPSSCTSDTECEVCQ 954
           + K+T+K      N         +  +            I  S  +   CE CQ
Sbjct: 748 IAKTTVKASSNSANPTASESMMDAAPAQEAKKSYSDAEVIACSLENPEACEACQ 801


>gi|147775539|emb|CAN71697.1| hypothetical protein VITISV_003192 [Vitis vinifera]
          Length = 791

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/834 (34%), Positives = 434/834 (52%), Gaps = 70/834 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   S +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R   +
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKEMYNHFNERSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L +++ Y+RDF ++Y G + L   Y L I G  +E PQ   M
Sbjct: 113 APLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +    A++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KDDIDSAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E   L D +G+EF   Y  YER     E K  + + A  LW ++L    ETG P+
Sbjct: 350 LFCPXEAPGLADCWGQEFVDLYTQYER-----EGKAKKVVQAQNLWFEVLKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD CN +S QQ++G + SSNLCTEI   +S++ETAVCNL SI L  +          
Sbjct: 405 MLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVPMES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA         L+ +ID+N +                   
Sbjct: 465 NPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYP-----------------F 507

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G      LL + + SPEA ++  +  E I +HA+ AS ELA   G Y ++ G    +G+
Sbjct: 508 QGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVSKGI 567

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+            +SR  WD L+K +   G+RNS  +A  PTA+ + I G ++
Sbjct: 568 LQPDMWGVTP----------SSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNE 617

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y +GS+  +  IP+D
Sbjct: 618 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPED 677

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT 
Sbjct: 678 LKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 737

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            YYLRSR+A    K T+      L     T  +  T    +  S T+  EC  C
Sbjct: 738 MYYLRSRAAADAIKFTVDTS--ILQERTKTADDDDTKMAQMVCSLTNREECMAC 789


>gi|3914639|sp|O15909|RIR1_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|2411477|gb|AAB70704.1| ribonucleotide reductase large subunit [Trypanosoma brucei]
          Length = 838

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/801 (35%), Positives = 423/801 (52%), Gaps = 29/801 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204
           +   DG++  ++ K +   +    SG+      +        + + +G+S S L+  L  
Sbjct: 8   VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y  +  R  +  L +    +V            + L+            
Sbjct: 68  TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDS--------FRVLHEHVSQATKRHAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319
                   + +     L   + YERDF FEY G + L   Y L ++  R     +E PQ 
Sbjct: 120 LISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
            F+RVA+G+  ++ E+     E Y+ +S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFLRVALGIHGEDLERV---KETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L++ A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+  FL L+KNTG + +R  D+    WIPDLFM+RV  + 
Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EF   YE YER     E +  R I A  LW  +L    ETG
Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYER-----EGRGVRTIQAQELWFLILESQVETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P++ +KD CN +S Q+++G +  SNLCTEI   +S +E AVCNL SI L     +  FD
Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y  L    +   R L+ VID N + + +A+ SN  HR +G+G+ G   A  LL +P+A P
Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHP 531

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA ++  +  E I   A+ AS ELA++ G Y +FKGS   +G    D       +R    
Sbjct: 532 EAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591

Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               +      WD LK+RV  +GMRNS  +A  PTA+ + I G ++ I+P   N+YV+  
Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRV 651

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  LV EL +  LW++ M   +   +GS+  I+ IP+ +++++   +EI   
Sbjct: 652 LSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            LI+ A+ R ++IDQ+QSLNL+L  P+  +L  ++  +W  GLKT  YYLRS+ A    K
Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771

Query: 914 STLKGVDGKLNAVPVTDPNSS 934
            TL     K    P       
Sbjct: 772 FTLDPKAMKELPKPDKQSKEE 792


>gi|154340341|ref|XP_001566127.1| ribonucleoside-diphosphate reductase large chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063446|emb|CAM39626.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 799

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/819 (34%), Positives = 435/819 (53%), Gaps = 41/819 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204
           I+  +G   ++++ ++    E    GL    +   ++     + + D +    L+  +  
Sbjct: 8   IIKRNGEAQTYDASKIRRRFERVMEGLDSDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y ++  R     L ++   ++ +          + L+     +      
Sbjct: 68  TAAYSVTKHPDYGRMGGRLCTTSLHKQTSESLLET--------FRLLHDHVTVQTHRPAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319
                   +M      L + + Y RD  FE+ G + L   Y L I         +E PQ 
Sbjct: 120 LVADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            FMRVA+G+  ++        E YNL+S   F  +TPTLFN+GT  PQ+SSCFL    DD
Sbjct: 180 MFMRVALGIHGRDLNNV---RETYNLMSMGFFTHATPTLFNAGTPKPQMSSCFLVASKDD 236

Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFMKRV    
Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMKRVKSEG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D +G+ FE  YE YE      E +  + I A  +W  +L    ETG
Sbjct: 357 RWTLMDPNTCPGLSDCHGEAFERLYERYEA-----EGRGVKTIQAQEVWFAILESQIETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
            P+I +KD CN +S Q+++G +  SNLCTEI   +S EETAVCNL SI L         +
Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPEETAVCNLASIALPRFVDVEKRE 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G      L+ +P+ 
Sbjct: 472 FNHQLLYAVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADTFILMRLPFV 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  E  E I F A+ +S+ELA+E G Y +FKGS   +G+   D           
Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKN------- 584

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            A   + R  W  LK++V  +G+RNS  ++  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGIRNSLLVSPMPTASTSQILGNNECFEPFTSNIYVRRVL 643

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +LV +L  R LW+E M +++  ++GSI NI+ IPDDLK+++ T +EI    
Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNEQMRNEIISYNGSILNIDGIPDDLKELYRTVWEIPQRK 703

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K 
Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYGWEAGLKTGVYYLRTKAAADAIKF 763

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K     + +  SS  ++      +   EC  C
Sbjct: 764 TVDAKRLK----EIQERESSQQTMSSHRV-SQPEECLNC 797


>gi|313844113|ref|YP_004061776.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
 gi|312599498|gb|ADQ91520.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
          Length = 747

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/780 (35%), Positives = 418/780 (53%), Gaps = 44/780 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL +   S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSEKCDSSKVAQQVASSLYDGITAQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R     +++      +   +K     +           + + 
Sbjct: 61  EICVGMITSDPDYETLATRITASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAGRVRDD 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                                +  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 121 ---------------------IDTKRDYDFGYFGLKTLEKSYLQRLDGVLMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382
           VA+G+     E     +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHG---EDIDSVLETYDKMSRGMFIHATPTLFNAGTPRPQMSSCFLIANKEDSING 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ EFL+LR N GD+  R  D+ +A WIPDLFMKRV ++  W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEESGNWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D  G+EFE  Y  YE      E +    + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSDAVGEEFEALYTKYEE-----ESRATATVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620
           +KD CN +S Q+++GV+ SSNLCTEI   +  +ETAVCNL SI L  +       FDY+K
Sbjct: 392 YKDACNQKSNQKNLGVIKSSNLCTEILEFTDKDETAVCNLASIALPKYVDPETKTFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +T  + L+ VID N + +E A+KSN  HR IGLG+ G      L    + S EA 
Sbjct: 452 LHEVTKTVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRHAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           EI     E +   A+ AS ELA+  G Y +F+GS   QGV   D      +         
Sbjct: 512 EINARIFETMYHAALEASSELAEVDGPYETFEGSPASQGVLQFDMWEGETK--------- 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R+K  G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 563 -LHYDWDALKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  LV++LK+  LW + M   +    GSI NI  IPD++KK++ T +EI    +I+ A
Sbjct: 622 IVNKHLVDDLKEIGLWSKDMKDLMVKAGGSIQNIVDIPDEIKKLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R ++IDQ+QS+NL+++ P+  KL  ++  +W  GLKT  YYLRS++     + +L+  
Sbjct: 682 ADRGRFIDQSQSMNLFMESPTMSKLSSMHMYSWKKGLKTGMYYLRSKAKARPIQFSLEPE 741


>gi|330467633|ref|YP_004405376.1| ribonucleoside-diphosphate reductase subunit alpha [Verrucosispora
           maris AB-18-032]
 gi|328810604|gb|AEB44776.1| ribonucleoside-diphosphate reductase, alpha subunit [Verrucosispora
           maris AB-18-032]
          Length = 791

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/827 (37%), Positives = 456/827 (55%), Gaps = 45/827 (5%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
                       +++   +G     +  ++   VE   + L ++    V ++T   +YDG
Sbjct: 5   RAQAGPEQRRHVMQVRKRNGDTEPVDVNKIVKAVERWVTDLDEIDPLRVATKTISGLYDG 64

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
            + ++L+   I ++  LI +EP Y+++ AR L   + +EV         +         Y
Sbjct: 65  ATTAELDKLSIQTAAELIGEEPQYSRLAARLLAAFVDKEVRGQ------QVASFSQSIRY 118

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                              + +  +   L + +    D  FEY GL+ + DRY L    +
Sbjct: 119 AHGLGLI-------GDATAAFVARNARKLDDAVDPAGDLRFEYFGLRTVADRYLLRHPQT 171

Query: 313 R--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           R  +E PQ + +RVA GL+    E    A+ FY L+SS  ++ S+PTLFNSGTRH Q+SS
Sbjct: 172 RQVVETPQYWLLRVACGLSQTPGE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSS 227

Query: 371 CFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL   P D+L  I+    + A L+K+SGG+G  WT VRG GA I GTNG+S G++PFLK
Sbjct: 228 CFLVDSPRDELDSIYERYHQVAKLSKFSGGIGISWTRVRGRGALIRGTNGRSNGIVPFLK 287

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANWIPD F
Sbjct: 288 TLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEF 347

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+RV  +  W+L  P +  +L DLYG+ F+ AY          E K  R + A  L+ +M
Sbjct: 348 MRRVEADGDWSLIDPSDAPELPDLYGEAFDEAYR-------AAEKKAVRTVKARDLYGRM 400

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           +  L +TG+ W+TFKD  N  S Q       +H SNLCTEI   ++  ETAVCNLGSINL
Sbjct: 401 MRTLAQTGNGWMTFKDAANRLSNQTGAPGNTIHLSNLCTEILEVNNDTETAVCNLGSINL 460

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            AH   +  D++KL +T+RTAV  LD VIDIN +  ++A  SN   R +GLGLMG Q A 
Sbjct: 461 AAHLTADGIDWEKLRATVRTAVLFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAF 520

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L +P+ S  A E++    E I   A+  S +LAQ+ G + ++  +   +G    D  G
Sbjct: 521 FTLRMPFDSTPARELSSRVQEEILLTALETSAQLAQQFGPHPAYDDTRAARGELHPDLWG 580

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                      + T    W  L++ +   G+RNS  +AIAPTATIA+I G  + I+P   
Sbjct: 581 A----------DLTQAQRWAALRETIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVS 630

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           NL+ +  MSG+F  +N++LV ELK R LW  ++   +K  +GS+  I  +P+D++++  T
Sbjct: 631 NLFKRETMSGEFLQINTYLVRELKARGLWTASIREQIKRAEGSVQGIAELPEDVRQLFRT 690

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           A+E+    LI+ A+ R  +IDQ+QSLNL++  P+  KL  +Y  AW  GLKTTYYLRSR 
Sbjct: 691 AWELPQRALIDLAAARAPFIDQSQSLNLFISAPTIGKLSSMYLYAWKSGLKTTYYLRSRP 750

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           AT ++++T+         V V D  +      +  S  +   CE CQ
Sbjct: 751 ATRIQQATVAVTPAAPAIVAVGDDEA------LACSLENPESCEACQ 791


>gi|163955126|ref|YP_001648230.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
 gi|163638575|gb|ABY27934.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
          Length = 747

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/780 (34%), Positives = 416/780 (53%), Gaps = 44/780 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL ++  S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSKNCDSSKVAQQVASSLYDGIAAQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R +   +++      +   +K     +           + + 
Sbjct: 61  EVCVGMITSDPDYEILATRIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAVRVRDD 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                                +  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 121 ---------------------IVTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           V++G+     E     +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VSIGIHG---EDIPAVLETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKGDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G+L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGSLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL+LR N GD+  R  D+ +A WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L +  G+EFE  Y  YE      E +    + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSEAVGEEFEALYTKYEE-----EGRANATVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   +  +ET+VCNL SI L  +       FDY+K
Sbjct: 392 YKDACNTKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ VID N + +E A+KSN  HR IGLG+ G      L  + + S EA 
Sbjct: 452 LHEITKVVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +     E +   A+ AS ELA+  G Y +F+GS   QG+   D      +         
Sbjct: 512 AMNARIFETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWQGETK--------- 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R++  G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 563 -LNYDWDALKERIREKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV +LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 622 VVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+  
Sbjct: 682 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLEPE 741


>gi|322368526|ref|ZP_08043094.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320551810|gb|EFW93456.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 815

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/819 (46%), Positives = 523/819 (63%), Gaps = 23/819 (2%)

Query: 153 TLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                 +  +  I++ A +G      +   + + SE  + +YDG S  ++  A+  +   
Sbjct: 3   QRTPTTTIDVRSILDRARTGYETAFPEDECETLASEIERTLYDGASTDEVYQAVTQAFSA 62

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
            +E+EP + ++ A    +    EV+       +    +E+   Y   F   +E  V+   
Sbjct: 63  RVEREPAFKRIAAAAFRQGYYHEVIG------ENLRGYELDREYRATFIENLERAVEIGR 116

Query: 269 LHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVA 325
           L E + + FDL  LA+ L+ +RD  FEY+ ++ L  RYFL    NG R+E+PQAF+MRVA
Sbjct: 117 LDERLPERFDLDDLASYLEPDRDERFEYMAMETLAQRYFLKTEENGERLELPQAFWMRVA 176

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           MGLA++E + ++RA EFY++LS   F  STPTLF+SG+ HPQLSSC+LTTV DDL  IF 
Sbjct: 177 MGLAVEEDDPQRRAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVSDDLEHIFD 236

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +   +A L+K+SGGLGNDWT +R  GA I  T  +S GV+PFL+++ND   A+N+ GKR+
Sbjct: 237 SYNHHAHLSKWSGGLGNDWTNLRASGALIESTGVESTGVVPFLRISNDVTAAINRSGKRR 296

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA CAYL  WH+D   F+DL++NTGD+RRRT DMNTA WIPDLFMKRV     WTLFSPD
Sbjct: 297 GAACAYLACWHLDFPAFIDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEAGEEWTLFSPD 356

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           EV DLHDL G+ F   Y  YE+QA+ GE + + ++ A  LWRK LT LFETGHPW+TFKD
Sbjct: 357 EVPDLHDLSGEAFAEKYREYEKQAEAGEFRQYERVDAEELWRKTLTRLFETGHPWLTFKD 416

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
           PCN+RSPQ H G VHSSNLCTEITLN+S +E AVCNLGS+N   H +  + ++D LA TI
Sbjct: 417 PCNVRSPQDHAGTVHSSNLCTEITLNTSEDEHAVCNLGSVNFATHVSGGELNHDHLAETI 476

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            TA+R+LDNV+D+  +  ++A+ SN  HR +GLG MGF  AL  L IP  S +A+E A+ 
Sbjct: 477 ETAMRMLDNVVDLCFYPTDEAEHSNMQHRPVGLGTMGFHDALMELGIPMDSEDAIEKANR 536

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744
             EF+S+HAI  S +LA ERG Y S++GS WD+G+ P D++  L   R  E+   R   L
Sbjct: 537 WQEFVSYHAIHNSSKLAAERGTYPSYEGSKWDRGMLPQDTVDTLEAERGREIPTEREETL 596

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  +++ V+  GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSG+FTVVN 
Sbjct: 597 DWYVVREHVEEHGMRNSNTMAIAPTATVSTINGTTPSIEPMYSNLYVKSNMSGEFTVVND 656

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            LV++LK  +LWDE M+  +KYHDG+I  I+ +PDDLK+++  AFEIDP   +   + RQ
Sbjct: 657 HLVDDLKALELWDEEMVDRIKYHDGTIQEIDAVPDDLKELYRGAFEIDPRHQLRLTAHRQ 716

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG--- 921
            WIDQ+ S N++     G  LD +Y+ AW +GLKTTYYLR+  A+ +EKSTL   +    
Sbjct: 717 TWIDQSVSHNVFFPSTDGTLLDDVYKTAWRLGLKTTYYLRTLGASGIEKSTLDMAEYGKS 776

Query: 922 ------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                   +       ++             D  C+ CQ
Sbjct: 777 QHRDGFGTDPDDDGSGDADDGDGETDLCTVEDPTCDACQ 815


>gi|15791174|ref|NP_280998.1| ribonucleotide-diphosphate reductase alpha subunit [Halobacterium
           sp. NRC-1]
 gi|169236930|ref|YP_001690130.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
 gi|10581792|gb|AAG20478.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|167727996|emb|CAP14784.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
          Length = 804

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/797 (48%), Positives = 519/797 (65%), Gaps = 12/797 (1%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L+  + +    +   +   +L+E  +N YD  +  +   AL+ +    I++ P Y  V  
Sbjct: 16  LDRALTDHEDDIDSDARDRILTEATRNAYDDATTDERYDALLGALTGRIDRHPAYKTVAG 75

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
                  R        +               + F   I+ G+ A LL E M D+DL  L
Sbjct: 76  -------RVLRERLERRLVDDYDPATRDAATRQAFRDGIQRGLDADLLDERMGDYDLNRL 128

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKR 338
           A+ +   RD   +Y+ +  L  RYFL   +    E+PQ F+MRVAMG+AL+E    +E+ 
Sbjct: 129 ADAITPARDDRLDYMAMDTLRQRYFLREPDADPFELPQPFWMRVAMGVALREDPADREEY 188

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A+EFY+ LS+  F+ STPTLF++GT H QLSSC+LTTVPDDL GIF A +E+A L+K+SG
Sbjct: 189 AIEFYDALSTLRFVHSTPTLFHAGTTHAQLSSCYLTTVPDDLDGIFDAYKEHAKLSKWSG 248

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           GLGNDWTP+R  G+ I  T  +S G +PFLK++ND   A+N+ GKR+GA  AYL  WH+D
Sbjct: 249 GLGNDWTPLRAAGSLIESTGVESTGTVPFLKISNDVTAAINRSGKRRGAAAAYLACWHLD 308

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
              F DLR+NTGD+RRRTHDMNTA WIPDLFM+RV  +  WTLFSP E  DL++LYG +F
Sbjct: 309 FPAFCDLRRNTGDERRRTHDMNTAAWIPDLFMERVRADKQWTLFSPKETGDLYELYGSDF 368

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
              Y  YE  AD G+I+ F ++ A  LWR MLT LFETGHPW+TFKDPCN+RSPQ H G 
Sbjct: 369 AERYREYEAMADDGDIQRFERVDATDLWRTMLTRLFETGHPWLTFKDPCNVRSPQDHAGT 428

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           V SSNLCTEITLN+S EETAVCNLGS+NL  H  +   D ++L+ T+ TA+R+LDNV+D+
Sbjct: 429 VRSSNLCTEITLNTSEEETAVCNLGSVNLARHLDDGDIDREQLSETVETAMRMLDNVVDL 488

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N +  E A++SN  HR +GLG+MGF  AL  + +P AS +A++ AD   E++++HAI AS
Sbjct: 489 NFYPTENAERSNMRHRPVGLGVMGFHDALQQMRVPMASDDALDRADALQEYVAYHAIGAS 548

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIG 757
            +LA ERG Y S++GS WD+ VFP D++  L   R  E+ + R  RL W ++++RV T G
Sbjct: 549 ADLAAERGTYESYEGSKWDRDVFPQDTVDRLESERGREIPVPREERLDWSDVRQRVATHG 608

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRNSN MA+APTATI+ I G + SI+P Y NLYVKSNMSGDFTVVN  LV +L++RDLW 
Sbjct: 609 MRNSNTMAVAPTATISTIAGTTPSIEPVYSNLYVKSNMSGDFTVVNDRLVADLEERDLWT 668

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E +   L YHDGS+  ++ +P+D+++++ TAFEIDP   +  A+RR  WIDQ+QS+N++ 
Sbjct: 669 EELRDKLTYHDGSVQELDAVPEDVQELYRTAFEIDPRHQLRLAARRGVWIDQSQSVNVFF 728

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            E  G KL  +Y+ AW +GLKTTYYLR+  A+ +EK+TL  +D   +     D +     
Sbjct: 729 PETDGSKLSEVYQTAWELGLKTTYYLRTLGASQIEKTTLD-MDEYDDTQFRGDDDGEDAD 787

Query: 938 LGIPSSCTSDTECEVCQ 954
                    D  CEVCQ
Sbjct: 788 GDGDLPSVEDPTCEVCQ 804


>gi|290343605|ref|YP_003494972.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1]
 gi|260161020|emb|CAY39721.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1]
          Length = 747

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/780 (34%), Positives = 418/780 (53%), Gaps = 44/780 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL ++  S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSKNCDSSKVAQQVASSLYDGIAAQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                +I  +P+Y  +  R +   +++      +   +K     +           + + 
Sbjct: 61  EVCVGMITSDPDYEILATRIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAGRVRDD 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                                +  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 121 ---------------------IVTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382
           V++G+  ++       +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VSIGIHGEDIPSV---LETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKGDSIDG 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G+L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGSLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ +FL+LR N GD+  R  D+ +A WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L +  G+EFE  Y  YE      E +    + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSEAVGEEFEALYTKYEE-----EGRANATVPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   +  +ET+VCNL SI L  +       FDY+K
Sbjct: 392 YKDACNTKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ VID N + +E A+KSN  HR IGLG+ G      L  + + S EA 
Sbjct: 452 LHEITKVVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +     E +   A+ AS ELA+  G Y +F+GS   QG+   D      +         
Sbjct: 512 AMNARIFETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWEGETK--------- 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R++ +G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 563 -LNYDWDALKERIRGVGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  LV +LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 622 VVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+  
Sbjct: 682 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLEPE 741


>gi|18640128|ref|NP_570202.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
 gi|18448535|gb|AAL69781.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
          Length = 757

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/778 (33%), Positives = 429/778 (55%), Gaps = 32/778 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G     + +++   ++  C  L    + +  + +E  K +Y+ +   D++T  
Sbjct: 1   MYVIKRSGKKELLSIEKITKRIDNLCYDLDKNFIDANYLANEIIKGLYNNIRTKDIDTFA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                  I +  +Y  + +R ++ KL +E   +            +  LY          
Sbjct: 61  SELIAGFITRHYDYDTLASRIVVSKLHKETTESFSDV--------IHTLYNYINPNNGNH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      ++     + N + Y+RD+++ Y G++ L   Y L  N   IE PQ   M
Sbjct: 113 LPMVSEYLYQQVNKHRDIIDNVIAYDRDYSYSYFGIKTLEKSYLLKQNNKIIERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+   + +     +E YN LS   F+ ++PTLFN+GT  PQ+SSCF+  + DD + 
Sbjct: 173 RVSLGIHGGDIDDV---IETYNYLSEKWFIHASPTLFNAGTPLPQMSSCFILPIKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L++ A+++K++GG+G   + +R  G +I G NGKS G++P L++ N+T   +NQG
Sbjct: 230 GIFDTLKQCALISKHAGGIGLSISNIRAKGTYISGINGKSNGIVPMLRIYNNTVRYINQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA+  Y+E WH D+ +FL LRKN G++  RT D+ TA W+PDLFM+RV ++  W+
Sbjct: 290 GDKRPGAMSIYIEPWHADIFDFLSLRKNVGNEEYRTKDLFTALWVPDLFMERVEKDEEWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P E   L D++G +F   Y  YE +     I   R      LW+ ++    E G P+
Sbjct: 350 LMCPCECPGLCDVWGNDFNKLYIEYETKKKIKAIVKARS-----LWKSIIEAQIEQGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I +KD CN +S Q ++G + SSNLCTEI   S+ +E AVCNLGSI+L     NN F +DK
Sbjct: 405 ILYKDSCNKKSNQSNLGTIRSSNLCTEIIQFSNEDEVAVCNLGSISLSKFVNNNVFMFDK 464

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +  V+ L+ +IDIN + + ++ +SN  HR IG+G+ G      LL   + S EA 
Sbjct: 465 LRIITKILVKNLNKIIDINYYPVIESSRSNKKHRPIGIGVQGLADVFILLGYAFDSEEAK 524

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E I + A+ +S ELA+  G Y ++  S   +G+   D              N 
Sbjct: 525 ILNIQIFETIYYAALESSCELAKIYGPYETYNDSPASKGILQYDMW----------LKNP 574

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W+ELKKR+ T G+RNS  +A  PTA+ + I   ++SI+P   N+Y +  +SGDF 
Sbjct: 575 TDLWDWNELKKRINTHGLRNSLLIAPMPTASTSQILSNNESIEPYTSNIYTRRVLSGDFQ 634

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+ EL  R++W+  + + +  H+GSI +++ +PD++K+I+ T +EI    ++E A
Sbjct: 635 VVNPHLLRELISRNMWNNDIKNTIVLHNGSIQHLD-LPDNIKQIYKTVWEISQKCILEMA 693

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
           + R  +IDQ+QS+ +Y+D P+  KL  ++   W +GLKT  YY+R++SA++  K T++
Sbjct: 694 ADRGAFIDQSQSMTIYIDNPTYAKLTSMHFYGWRLGLKTGMYYMRTKSASNPIKFTVE 751


>gi|322493171|emb|CBZ28456.1| ribonucleoside-diphosphate reductase large chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 799

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/819 (34%), Positives = 429/819 (52%), Gaps = 41/819 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204
           I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  +  
Sbjct: 8   IIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y ++  R     L ++   ++ +          + L+     +      
Sbjct: 68  TAAYSVTKHPDYGRMGGRLCTTSLHKQTNASLLET--------FRLLHDHVTVQTNRPAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319
                   +M      L   + Y RD +FE+ G + L   Y L I         +E PQ 
Sbjct: 120 LIAGDVWEVMQQHHKELQGMIDYSRDLSFEFFGYKTLERSYLLRIESGRGEMRIVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378
            FMRVA+G+   + +      E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFMRVALGIHGTDLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH D+  FL L++NTG D +R  D+  A WIPDLFM+RV    
Sbjct: 297 DQGGGKRKGAFAVYLEPWHADIFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EFE  YE YE      E +  + I A  +W  +L    ETG
Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
            P+I +KD CN +S Q+++G +  SNLCTEI   +S +ETAVCNL SI L         +
Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKRE 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L +  +   R L+ VID N + +E A+ SN  +R IGLG+ G   A  L+ +P+ 
Sbjct: 472 FNHQLLYTVTKQITRNLNRVIDRNYYPVETARHSNMRNRPIGLGVQGLADAFILMRLPFV 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  E  E I F A+ +S+ELA+E G Y +FKGS   +G+   D           
Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKNPR----- 586

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                + R  W  LK++V  +G+RNS  +A  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 587 ---PNSGRWDWASLKEKVMQVGLRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  IPDDL++++ T +EI    
Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGIPDDLRELYRTVWEIPQRK 703

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K 
Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGLYYLRTKAAADAIKF 763

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K           ++         +   EC  C
Sbjct: 764 TVDAKRMK-----EIQERENSQQTMSSRRASQPEECLNC 797



 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 8/58 (13%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
          +IKRNG    +D SKI     + F  V         R    +  LTE     L    +
Sbjct: 8  IIKRNGEAQPYDASKI----RRRFERVMEGLD----RDHLDVDMLTENVTRGLTDQIR 57


>gi|195119233|ref|XP_002004136.1| GI18284 [Drosophila mojavensis]
 gi|193914711|gb|EDW13578.1| GI18284 [Drosophila mojavensis]
          Length = 771

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/793 (36%), Positives = 417/793 (52%), Gaps = 46/793 (5%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +  +    +Y G+S  +L+      + +L     +YA + AR  +  L +E         
Sbjct: 3   ITLKVINGLYCGVSTQELDNLAAEIAASLTTLHADYALLAARIAVSNLHKET-------- 54

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           +K      + L+                 H +++  +   L + + Y+RDF + Y G + 
Sbjct: 55  KKVFSDVFEDLFKHVNKETNLPSPLVSEYHYNIVKNNSDRLNSAIIYDRDFGYNYFGFKT 114

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L   Y L ING   E PQ   MRVA+G+     E    AVE YNLLS   F  ++PTLF 
Sbjct: 115 LERSYLLKINGKIAERPQHLLMRVAIGIHG---EDIDSAVETYNLLSERFFTHASPTLFA 171

Query: 361 SGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           + T  PQLSSCFL T V D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG
Sbjct: 172 AATNRPQLSSCFLLTIVSDSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNG 231

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++P L+V N+ A  V+QGG KR GA   YLE WH DV EFLDL+KNTG +  R  D
Sbjct: 232 TSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARD 291

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A WIPDLFMKRV  N  W+L  P +   L D++G++FE  Y  YER     E +  R
Sbjct: 292 LFFALWIPDLFMKRVEANEDWSLMCPHKCPGLPDVWGEDFENLYIKYER-----EGRANR 346

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A +LW  ++    ETG P++ FKD CN +S QQ+VG +  SNLCTEI   S+ +E A
Sbjct: 347 VIKAQSLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIA 406

Query: 599 VCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           VCNL SI L       + +D+ KL    +   + L+ +IDIN + + +AKKSN  HR IG
Sbjct: 407 VCNLASIALNMFVTQEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIG 466

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ GF  AL L+   Y S EA  +  +  E I + A+ AS ELAQ  G Y ++ GS   
Sbjct: 467 IGVQGFADALILMRYSYESREAFLLNQQIFETIYYGALEASCELAQRDGPYETYVGSPVS 526

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G+   D                T    W+ LKK +   G+RNS  +A  PTA+ A I G
Sbjct: 527 KGILQYDMWNKSP----------TDLWDWNALKKSIAQHGVRNSLLIAPMPTASTAQILG 576

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            ++S +P   N+Y +  +SG+F VVN  L+ +L + DLWD+ M + +    GSI NIE I
Sbjct: 577 NNESFEPYTSNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDEMKNQIISSRGSIQNIESI 636

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P +++ ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+  KL  I+  +W  GL
Sbjct: 637 PKEIRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGL 696

Query: 898 KT-TYYLRSRSATSVEKSTLKG----------------VDGKLNAVPVTDPNSSTHSLGI 940
           KT  YYLR++ A +  + T+                     +++    +D         +
Sbjct: 697 KTGMYYLRTKPAANAIQFTVNKNISVLESNGHSSFEKNTSLEVDNPSESDIERERRMADM 756

Query: 941 PSSCTSDTECEVC 953
             S  +   C  C
Sbjct: 757 ICSLENKDACLSC 769


>gi|314055218|ref|YP_004063556.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
 gi|313575109|emb|CBI70122.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
          Length = 747

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/780 (35%), Positives = 418/780 (53%), Gaps = 44/780 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++++   G +       +   ++    GL ++  S  V  +   ++YDG++  +++T   
Sbjct: 1   MRVVKRSGRIEDMKFDNITNRIKNLTYGLSENCDSSKVAQQVASSLYDGITVQEIDTLSA 60

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                LI  +P+Y  +  R     +++      +   +K     +           + + 
Sbjct: 61  EVCIGLITSDPDYEILATRITASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAGRVRDD 120

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                                +  +RD+ F Y GL+ L   Y   ++G  +E PQ  FMR
Sbjct: 121 ---------------------IDTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382
           VA+G+     E     +E Y+ +S   F+ +TPTLFN+GT  PQ+SSCFL     D + G
Sbjct: 160 VAIGIHG---EDIDSVLETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKEDSING 216

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+G L E A ++K++GG+G     VR   + I GTNG+S G+IP L+V N TA  VNQ G
Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKG++  YLE WH D+ EFL+LR N GD+  R  D+ ++ WIPDLFMKRV +   W+LF
Sbjct: 277 RRKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSSLWIPDLFMKRVEEGGQWSLF 336

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            PD+   L D  G+EFE  Y  YE +     I     + A  +W+ +L    ETG P++ 
Sbjct: 337 CPDKAPGLSDAVGEEFEALYTKYEAEGRANAI-----VPAADVWKAILKSQTETGTPYML 391

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620
           +KD CN +S Q+++G + SSNLCTEI   +  +ETAVCNL SI L  +       FDY+K
Sbjct: 392 YKDACNKKSNQKNLGTIKSSNLCTEILEYTDKDETAVCNLASIALPKYVNEETRTFDYEK 451

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    +   + L+ VID N + +E A+KSN  HR IGLG+ G      L    + S EA 
Sbjct: 452 LHEITKIVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRYAFDSDEAK 511

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+     E +   ++ AS ELA+ +G+Y +F+GS   QGV   D      +         
Sbjct: 512 EMNARIFETMYHASLEASCELAEAQGSYETFEGSPTSQGVLQFDMWEGETK--------- 562

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                WD LK+R+K  G+RNS  MA  PTA+ A I G ++  +P   N+Y++  ++G+F 
Sbjct: 563 -LNYDWDVLKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +VN  LVN+LK+  LW + M   +    GSI NI  IPDD+K ++ T +EI    +I+ A
Sbjct: 622 IVNKHLVNDLKKIGLWSKDMKDLMVKAGGSIQNISDIPDDIKNLYRTVWEIKMKDVIDMA 681

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           ++R ++IDQ+QS+NL+++ P+  KL  ++  AW  GLKT  YYLRS++     + +L+  
Sbjct: 682 AQRGRFIDQSQSMNLFMESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLEPE 741


>gi|47222551|emb|CAG02916.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 898

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/922 (32%), Positives = 451/922 (48%), Gaps = 145/922 (15%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSS------------------------------ 178
           DG   + +  ++   V++ C GL    V                                
Sbjct: 1   DGRQEAVSFDKITSRVQKLCYGLNSEFVDPVSTNRQCGPVGQTGPLCVLVPVTRLLWLCQ 60

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             +  +  + +Y G++ ++L+T    ++ TL  K P+YA + AR  +  L +E       
Sbjct: 61  AQITLKVIQGLYSGVTTAELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET------ 114

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             +K     M+ LY                    ++  +   L + + Y+RDF++ + G 
Sbjct: 115 --KKVFSDVMEDLYNYVNPLNKLHSPMISKETLHIIRENKARLNSAIIYDRDFSYNFFGF 172

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + L   Y L ING   E PQ   MRVA+G+   + E    A+E YNLLS   F  ++PTL
Sbjct: 173 KTLERSYLLKINGKVAERPQHMLMRVAVGIHQADME---AAIETYNLLSERWFTHASPTL 229

Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           FN+GT   QLSSCFL T+ DD + GI+  L++ A+++K +GG+G   + +R  G++I GT
Sbjct: 230 FNAGTNRSQLSSCFLLTMKDDSIEGIYDTLKQCALVSKSAGGIGLAVSCIRATGSYIAGT 289

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-----------------------------RKGAV 448
           NGKS G++P L+V N+TA  V+QGG                              R GA 
Sbjct: 290 NGKSNGLVPMLRVYNNTARYVDQGGNKVRMKVGEQTASRLRNIRDVIQVWLFLGQRPGAF 349

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YLE WH DV +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P E  
Sbjct: 350 AVYLEPWHSDVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPSECP 409

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L D +G+EFE  Y  YE+     E +  R + A  LW  ++    ETG P++ +KD CN
Sbjct: 410 GLTDCWGEEFEELYTRYEK-----EGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 464

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRT 627
            +S QQ++G +  SNLCTEI   +S +E AVCNL SI L  +    + +D+ KLAS  +T
Sbjct: 465 RKSNQQNLGTIRCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPQRTYDFHKLASVTKT 524

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            V+ L+ +IDIN + + +AK+SN  HR IG+G+ G   A  L+  PY SPEA  +  +  
Sbjct: 525 IVKNLNKIIDINYYPVPEAKRSNLRHRPIGIGVQGLADAFILMRHPYESPEAQLLNTQIF 584

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I   A+ AS ELA E G Y ++ GS   +GV   D  G             T    W 
Sbjct: 585 ETIYHAALEASCELAAEFGPYQTYAGSPVSRGVLQYDMWGKTP----------TDLWDWT 634

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV------ 801
            LK+++   G+RNS  +A  PTA+ A I G ++S +    N+Y +  +SG+F V      
Sbjct: 635 ALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEAYTSNIYTRRVLSGEFQVCTRAFR 694

Query: 802 -------------------VNSFLVNELKQRDLWDEAMISDLKYHDGSI----------- 831
                              VN  L+ +L +R LW + M + L  H+GSI           
Sbjct: 695 PSLTAAGKAERKIWPRLQIVNPHLLKDLTERGLWSDGMKNQLIAHNGSIQVERRICCISS 754

Query: 832 ------------------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                              NI  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSL
Sbjct: 755 TISLWQKPIFYKYFFNGQQNIPEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSL 814

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDP 931
           N+++ EP+  KL  ++   W +GLKT  YYLR++ A +  + TL      +  A    + 
Sbjct: 815 NIHIAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKETLKEAQAARSEEE 874

Query: 932 NSSTHSLGIPSSCTSDTECEVC 953
           +   ++  +  S  +  EC +C
Sbjct: 875 SKERNAAAVVCSLANKDECMMC 896


>gi|308798579|ref|XP_003074069.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
 gi|116000241|emb|CAL49921.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
          Length = 840

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/869 (30%), Positives = 417/869 (47%), Gaps = 94/869 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV----------------SSKIVLSETYKN 188
           L ++  DG        ++   +++   GL                   S  IV  +    
Sbjct: 4   LYVVKRDGREEPVAFDKITARIKKLAYGLSQEFCDPVRTDHGRLHLPHSQVIVAQKVCMG 63

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           ++ G++  +L+     ++ ++  K P+YA + AR  +  L +  + +  +         M
Sbjct: 64  VFAGVTTKELDELAAETAASMTSKHPDYALLAARISVSNLHKTTVKSFSET--------M 115

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           + +Y     R  +           ++  +   L  +L Y+RDF ++Y G + L   Y L 
Sbjct: 116 KVMYEHVNKRNGKWSPLLADDVYEIIMANAEKLDAELVYDRDFDYDYFGFKTLERSYLLR 175

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           I+G  +E PQ   MRV++G+        ++A++ Y++LS      ++PTLFN+GT  PQL
Sbjct: 176 IDGKVVERPQHLLMRVSIGIH---KTDIEKAIDTYHMLSERWMTHASPTLFNAGTPRPQL 232

Query: 369 SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           SSCFL  +  D + GI+  L+E A ++K +GG+   +                S   +  
Sbjct: 233 SSCFLICMKEDSIEGIYDTLKECACISKSAGGIALTFEAPTERRTASFRCCVCSTTRLAT 292

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
                 +A            V  YLE WH D+ ++LDLRKN G +  R  D+    W  D
Sbjct: 293 WTKVVVSAR----------NVRIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTND 342

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV  N  WTL  P+E   L D +G+EFE  YE YE      E K  + I A  LW 
Sbjct: 343 LFMKRVEANGEWTLMCPNECPGLSDCWGEEFETLYEKYEA-----EGKGKKTIKAQQLWF 397

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +L    ETG+P++ FKD CN +S QQ++G + SSNLCTEI   +S +ETAVCNL SI L
Sbjct: 398 AILESQVETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEYTSPDETAVCNLASIAL 457

Query: 608 LAHF-----------------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
                                          FD+ KL    R   R L+ +ID+N + +E
Sbjct: 458 PRFVIENNPSSPTGRTETKKLVGSLKSKERFFDHSKLFEITRKVTRNLNRIIDVNYYPVE 517

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            AK SN  HR IGLG+ G      LL +P+ SPEA ++  E  E I F A++ S  LA  
Sbjct: 518 AAKNSNMRHRPIGLGVQGLADVFILLGLPFDSPEAQKLNAEIFETIYFAALTESNALAVA 577

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G YS+++GS   +GV   D  GL         M   +R  W  L+  +   G+RNS  +
Sbjct: 578 EGPYSTYEGSPVSKGVLQPDMWGLT-------EMPGGNRHDWAGLRASIAQHGVRNSLLV 630

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A  PTA+ + I G ++  +P   N+Y +  +SG+FTVVN  L+++L +  LWD  + ++L
Sbjct: 631 APMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTELGLWDPELKNEL 690

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             ++GS+ +++ IPD+LK I+ T +EI    L++ A+ R  +IDQ+QS N+++ +P+  K
Sbjct: 691 ISNNGSVQDLD-IPDNLKNIYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDPNSGK 749

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH------- 936
           L  ++  AW  GLKT  YYLRSR+A    K T+     K       +  +S         
Sbjct: 750 LTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTVDATKTKSKVNKENEAPASPRKPTKADL 809

Query: 937 ------------SLGIPSSCTSDTECEVC 953
                       +  +  S  +  +C +C
Sbjct: 810 EKMTDEEKEAYLAAKLQCSLQNRDDCVMC 838


>gi|207345939|gb|EDZ72594.1| YER070Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 732

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/759 (35%), Positives = 399/759 (52%), Gaps = 37/759 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   +   C GL    + +  V       +Y+G++  +L+   
Sbjct: 1   MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K  +         LY        + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L + + Y+RDF + Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+  ++ E    A+E YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  +  D + 
Sbjct: 173 RVALGIHGRDIE---AALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G+IP ++V N+TA  V+QG
Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +F+D+RKN G +  R  D+  A WIPDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D YG EFE  Y  YE++         + I A  LW  +L    ETG P+
Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN +S Q+++GV+ SSNLC EI   S+ +ETAVCNL S+ L A          +
Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++ KL    +   R L+ VID N + +E+A+KSN  HR I LG+ G      LL +P+
Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I   ++ AS ELAQ+ G Y +F+GS   QG+   D          
Sbjct: 524 DSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      WD L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 580 ------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WDE M   L   +GSI  +  +P +LK ++ T +EI   
Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
            +I  A+ R  +IDQ+ SLNL+L  P+  KL  ++   W
Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGW 732


>gi|170782701|ref|YP_001711035.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157271|emb|CAQ02456.1| ribonucleoside-diphosphate reductase alpha subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 834

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/784 (39%), Positives = 466/784 (59%), Gaps = 13/784 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG+   +++ R+ + +E+A  GL +       + SE    ++DG++   L+ A
Sbjct: 2   SITVVKRDGSKEPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I  +   ++ +P +  V AR LL+ + + VL          +  E++ L+ E+F R I+
Sbjct: 62  VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYS------SPEELKRLHAEHFARNIQ 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
            GV   LL   ++  FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ 
Sbjct: 116 RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MR+AMGL L E    + A+ FY  +S   ++ +  TL N+GT +PQL++CF+  + DD
Sbjct: 176 FWMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I    ++   L K +GG+G   + +R  G+ I   N  S G IPF+   +    AV+
Sbjct: 236 IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  EFLDLR+N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P EVSDL++LYGK F   Y  Y  +A+ G I++F++I+A   ++ +L  L  T HP
Sbjct: 356 YLFDPLEVSDLNELYGKAFSERYAFYVGEAEAGRIRMFKRINAREQFKSILISLQTTSHP 415

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           W+T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  HFA+ + D+ 
Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFA 475

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K+  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E+
Sbjct: 476 KIEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGFSYESEES 535

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
            ++ DE ME +S+ AI  S +LA+ERGAY +F+GS W +G+ P+DSI L+   R   + +
Sbjct: 536 YDLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKV 595

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           NRT+RL WD L+ +V   GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  SG 
Sbjct: 596 NRTTRLDWDALRAKV-KGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGK 654

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  VN  LV +L++  +W E +  ++    G I NI  IPD +K  + T+F++ P   +E
Sbjct: 655 FLEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLE 713

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            A+R QKWIDQA S N+YL+      +  IY   W  G+KTTYYL  +   + E+ST+K 
Sbjct: 714 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVKV 773

Query: 919 VDGK 922
              +
Sbjct: 774 DKSQ 777



 Score = 38.3 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53
          V+KR+G    +D ++I+ AI  A
Sbjct: 5  VVKRDGSKEPYDANRINLAIEDA 27


>gi|148273613|ref|YP_001223174.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831543|emb|CAN02510.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 834

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/784 (39%), Positives = 465/784 (59%), Gaps = 13/784 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201
            + ++  DGT   +++ R+ + +E+A  GL +       + SE    ++DG++   L+ A
Sbjct: 2   SITVVKRDGTREPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I  +   ++ +P +  V AR LL+ + + VL          +  E++ L+ E+F R I+
Sbjct: 62  VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYS------SPEELKRLHAEHFARNIQ 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
            GV   LL   ++  FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ 
Sbjct: 116 RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MR+AMGL L E    + A+ FY  +S   ++ +  TL N+GT +PQL++CF+  + DD
Sbjct: 176 FWMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I    ++   L K +GG+G   + +R  G+ I   N  S G IPF+   +    AV+
Sbjct: 236 IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  EFLDLR+N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDDDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P EVSDL++LYGK F   Y  Y  +A+ G I++F++I A   ++ +L  L  T HP
Sbjct: 356 FLFDPLEVSDLNELYGKAFSERYAFYVAEAEAGRIRMFKRIKAREQFKSILISLQTTSHP 415

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           W+T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  HFA+ + D+ 
Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFA 475

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           K+  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E+
Sbjct: 476 KIEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGYSYESEES 535

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738
            ++ DE ME +S+ AI  S +LA+ERGAY +F+GS W +G+ P+DSI L+   R   + +
Sbjct: 536 YDLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKV 595

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           NRT+RL WD L+ +V   GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  SG 
Sbjct: 596 NRTTRLDWDALRAKV-KGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGK 654

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  VN  LV +L++  +W E +  ++    G I NI  IPD +K  + T+F++ P   +E
Sbjct: 655 FLEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLE 713

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            A+R QKWIDQA S N+YL+      +  IY   W  G+KTTYYL  +   + E+ST+K 
Sbjct: 714 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVKV 773

Query: 919 VDGK 922
              +
Sbjct: 774 DKSQ 777



 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53
          V+KR+G    +D ++I+ AI  A
Sbjct: 5  VVKRDGTREPYDANRINLAIEDA 27


>gi|300709534|ref|YP_003735348.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus
           jeotgali B3]
 gi|299123217|gb|ADJ13556.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus
           jeotgali B3]
          Length = 797

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/799 (49%), Positives = 524/799 (65%), Gaps = 12/799 (1%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
              +E I+E+A     + S   +     ++ Y+G S  ++  A+I +    I++ P Y  
Sbjct: 8   PDGIEAILEQAWDDRAEGSPDDIARAARRDCYEGASREEVYEAIIGALTARIDRVPEYRT 67

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           V AR    +   E +             + +  Y + F   IE GV+A LL E M ++DL
Sbjct: 68  VAARVFRRRYFEERVG--------VAPDDHEAAYRDSFVASIERGVEADLLDERMGEYDL 119

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKE 336
             LA  L+  RD   +Y+ ++ L  RYFL      IE+PQ F+MRVAMG+AL+E   E+E
Sbjct: 120 SRLAEALEPTRDDRLDYMAMETLSQRYFLREGDEPIELPQTFWMRVAMGIALREAPEERE 179

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           K A EFY+LLS+  F+ STPTLF++GT HPQLSSC+LTTVPDDL GIF A +E+A L+K+
Sbjct: 180 KYAKEFYDLLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEHAKLSKW 239

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           SGGLGNDWTP+R  GA I  T  +S G +PFLK+AND   A+N+ GKR+GA CAYLE WH
Sbjct: 240 SGGLGNDWTPLRASGARISSTGVESTGTVPFLKIANDVTGAINRSGKRRGAACAYLEAWH 299

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
           +D   FLDLR+NTGD+RRRTHDMNTA W+PDLFMKRV  +  W LFSP+EV DLH  YG+
Sbjct: 300 MDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMKRVQNDEKWMLFSPEEVPDLHGTYGR 359

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  YE YER+A+ GE+  + +  A  LWR+ LT LFETGHPWITFKDPCN+RSPQ H 
Sbjct: 360 EFEERYEEYERRAEAGELDQYERCEAAELWRRTLTRLFETGHPWITFKDPCNVRSPQDHA 419

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           GV++SSNLCTEITLN+S EETAVCNLGS+NL  H   +  D + LA T+ TA+R+LDNV+
Sbjct: 420 GVINSSNLCTEITLNTSEEETAVCNLGSVNLSRHVIEDGLDREALAETVNTAMRMLDNVV 479

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N +  EKA++SN  HR +GLG MGF  AL    IP  S +AVE AD + E +S+HAI 
Sbjct: 480 DLNFYPTEKAERSNMRHRPVGLGTMGFHDALLEQDIPMNSEKAVEFADRTQELVSYHAIL 539

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKT 755
            S ELA ERGAY S++GS WD+ +FP D++ +L E R  E+ ++   RL W  +++ V  
Sbjct: 540 GSSELAAERGAYGSYEGSKWDRDLFPQDTVSILEEERGREIPIDVEERLDWGRVREHVSE 599

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNSN MA+APTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N  LV++L++R L
Sbjct: 600 HGMRNSNTMAVAPTATISTIAGTTPSIEPIYSNLYVKSNMSGDFTVINDHLVSDLRERGL 659

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W + +   + YHDGSI  I+ IP+D+ ++H  AFEIDP   +  ++ R  WIDQ QS N+
Sbjct: 660 WTDEIRDRITYHDGSIQEIDAIPEDVTELHRGAFEIDPRHQLRLSAERATWIDQGQSHNV 719

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +     G  L  +Y  AW +GLKTTYYLR+  A+ VEK+TL  +    +       +   
Sbjct: 720 FFPSTDGSLLAGVYETAWELGLKTTYYLRTLGASQVEKTTLD-MREYDDTQFRDSDDDDD 778

Query: 936 HSLGIPSSCTSDTECEVCQ 954
              G       D  CE CQ
Sbjct: 779 EDEGNGLPSVEDPTCEACQ 797


>gi|164659252|ref|XP_001730750.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
 gi|159104648|gb|EDP43536.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
          Length = 850

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/752 (35%), Positives = 406/752 (53%), Gaps = 33/752 (4%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           V    +  +    +Y+G++  +L+     ++       P+YA + AR  +  L +E   +
Sbjct: 4   VDPIEITRKVIDGIYEGVTTVELDNLAAETAAYKTTTHPDYAVLAARIAISNLHKETKKS 63

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
             +         +Q L+     +             + +      L + + YERDF + +
Sbjct: 64  FSQV--------IQDLHDYVNPKTGRPSSMISEETFNTVMKHRELLDSAIIYERDFHYNF 115

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
            G + L   Y L ING   E PQ   MRVA+G+     E  + A+E YN +S   F  ++
Sbjct: 116 FGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHG---EDIESAIETYNYMSEKAFTHAS 172

Query: 356 PTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PTLFN+GT +PQ+SSCFL ++  D + GI+  L+  AM++K +GG+G +   +RG G++I
Sbjct: 173 PTLFNAGTPNPQMSSCFLVSMKEDSIEGIYDTLKTCAMISKTAGGIGLNIHNIRGTGSYI 232

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH DV EF+DLRKN G D 
Sbjct: 233 AGTNGVSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHPDVFEFVDLRKNHGKDE 292

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R  D+  A W+PDLFMKRV +N  W+L  P E   L D YG+EF         +    E
Sbjct: 293 VRARDLFLAMWVPDLFMKRVEKNEDWSLMCPAEAPGLADCYGEEF-----EELYERYERE 347

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            +  R + A  LW  +L    ETG+P++ +KD  N +S Q+++G + SSNLCTEI   SS
Sbjct: 348 GRAKRSVKAQKLWYAILEAQIETGNPFMLYKDAANRKSNQKNLGTIKSSNLCTEIMEYSS 407

Query: 594 SEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
            EETAVCNL SI L         +  +++ +L    +   + L+ +IDIN + +  A++S
Sbjct: 408 PEETAVCNLASIALPTFIEGTGASKIYNFQRLHDVAKVVCKNLNRIIDINYYPVPSARRS 467

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR IG+G+ G   A  ++  P+ S EA  +  +  E I   A+  S ELA++ G Y 
Sbjct: 468 NMRHRPIGIGVQGLADAFMIMGYPFDSQEARRLNLQIFETIYHAALERSCELAEQYGTYE 527

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++GS   QG+   D                T    W  LK ++   G+RNS  +A  PT
Sbjct: 528 TYQGSPASQGILQYDMWNRTP----------TDLWDWASLKAKIAQHGLRNSLLLAPMPT 577

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ + I G ++  +P   N+Y++  ++G+F VVN +L+ EL +  LW+++M   +  H G
Sbjct: 578 ASTSQILGFNECFEPYTNNIYMRRVLAGEFQVVNPWLLRELVELGLWNDSMKQKIIAHGG 637

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI NI  IPD +K ++ T +EI    +I+ A+ R  ++ Q+QSLN++L  PS  +L  ++
Sbjct: 638 SIQNIPGIPDHIKALYKTVWEISQKVIIDMAADRGAFVCQSQSLNIHLSAPSFGQLTSMH 697

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
              W  GLKT +YYLR+R A S  + T+   +
Sbjct: 698 FYGWKKGLKTGSYYLRTRPAASAIQFTVSNEE 729


>gi|146091813|ref|XP_001470128.1| ribonucleoside-diphosphate reductase large chain [Leishmania
           infantum]
 gi|134084922|emb|CAM69320.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania infantum JPCM5]
          Length = 799

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/819 (34%), Positives = 435/819 (53%), Gaps = 41/819 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204
           I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  +  
Sbjct: 8   IIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y ++  R     L ++   ++ +          + L+     +      
Sbjct: 68  TAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLET--------FRLLHDHVTVQTNRPAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319
                   +M      L + + Y RD  FE+ G + L   Y L I         +E PQ 
Sbjct: 120 LIADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378
            FMRVA+G+   + +      E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFMRVALGIHGADLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV    
Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EFE  YE YE      E +  + I A  +W  +L    ETG
Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
            P+I +KD CN +S Q+++G +  SNLCTEI   +S +ETAVCNL SI L         +
Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKRE 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G   A  L+ +P+ 
Sbjct: 472 FNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFV 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  E  E I F A+ +S+ELA+E G Y +F GS   +G+   D           
Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKN------- 584

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            A   + R  W  LK++V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI    
Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRK 703

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K 
Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKF 763

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K     + +  +S  ++    + +   EC  C
Sbjct: 764 TVDAKRMK----EIQERENSQQTMSSHRA-SQPEECLNC 797


>gi|159040365|ref|YP_001539618.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           arenicola CNS-205]
 gi|157919200|gb|ABW00628.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           arenicola CNS-205]
          Length = 821

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/856 (37%), Positives = 461/856 (53%), Gaps = 65/856 (7%)

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET 185
           +  RA    +  +      +++   +G     +  ++   VE   + L +V    V ++T
Sbjct: 4   TRERATPGQAGQEQRRQ-VMEVRKRNGDTEPVDVNKIVKAVERWVADLDEVDPLRVATKT 62

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
              +YDG + ++L+   I ++  LI +EP Y+K+ AR L   + +EV             
Sbjct: 63  ISGLYDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQQVAS------ 116

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILY 302
                     F + I       L+ +    F   +   L + +    D  FEY GL+ + 
Sbjct: 117 ----------FSQSIRYAHGLGLISDDTAAFVSRNARKLDDAVDPAGDLRFEYFGLRTVA 166

Query: 303 DRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           DRY L    SR  +E PQ + +RVA G++    E    A+ FY L+SS  ++ S+PTLFN
Sbjct: 167 DRYLLRHPQSRLVVETPQYWLLRVACGMSRTPAE----AIGFYQLMSSLAYLPSSPTLFN 222

Query: 361 SGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           SGTRH Q+SSCFL   P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG
Sbjct: 223 SGTRHTQMSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNG 282

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S G++PFLK  +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++
Sbjct: 283 RSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNL 342

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N ANW+PD FM+RV  +  W+L  P +  +L DLYG EF+ AY   E+       K  R 
Sbjct: 343 NLANWLPDEFMRRVEADGDWSLIDPSDAPELPDLYGDEFDAAYRVAEK-------KAVRT 395

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEET 597
           + A  L+ +M+  L +TG+ W+TFKD  N  S Q  Q    +H SNLCTEI   ++  ET
Sbjct: 396 VKARDLYGRMMRTLAQTGNGWMTFKDRSNTLSNQTGQPANTIHLSNLCTEILEVNNDTET 455

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           AVCNLGS+NL AH   +  D++KL +T+RTAV  LD VIDIN +  E+A  SN   R +G
Sbjct: 456 AVCNLGSVNLGAHVTVDGVDWEKLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVG 515

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LGLMG Q A   L +P+ S EA E++    E I   A+  S  LA+  G + ++  +   
Sbjct: 516 LGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAETRAA 575

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G    D  G             T    W  LK R+   G+RNS  +AIAPTATIA+I G
Sbjct: 576 RGDLHPDLWGATP----------TQTRRWAGLKARIAEHGLRNSLLVAIAPTATIASIAG 625

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
             + I+P   NL+ +  MSG+F  VN++LV ELK R LW   +   ++  +GS+  +  +
Sbjct: 626 CYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARGLWTAQIRDQIRRAEGSVQGLGEL 685

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P +++++  TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GL
Sbjct: 686 PAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGL 745

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-------------------THSL 938
           KTTYYLRSR AT ++++T+         V                           T + 
Sbjct: 746 KTTYYLRSRPATRIQQATVAVTPTVPPGVADASSAQPGVAPGLSGAAASSASGVAGTDAE 805

Query: 939 GIPSSCTSDTECEVCQ 954
            +  S  +   CE CQ
Sbjct: 806 ALACSLENPESCEACQ 821


>gi|157871642|ref|XP_001684370.1| ribonucleoside-diphosphate reductase large chain [Leishmania major
           strain Friedlin]
 gi|68127439|emb|CAJ05210.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania major strain Friedlin]
          Length = 799

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/819 (34%), Positives = 430/819 (52%), Gaps = 41/819 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204
           I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  +  
Sbjct: 8   IIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y ++  R     L ++   ++ +          + L+     +      
Sbjct: 68  TAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLET--------FRLLHSHVTVQTNRPAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319
                   +M      L   + Y RD  FE+ G + L   Y L I         +E PQ 
Sbjct: 120 LIADDVWEVMKQHHAELQGMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378
            FMRVA+G+   + +      E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFMRVALGIHGADLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV    
Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EFE  YE YE      E +  + I A  +W  +L    ETG
Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF- 616
            P+I +KD CN +S Q+++G +  SNLCTEI   +SS+ETAVCNL SI L       +  
Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSSQETAVCNLASIALPRFVEVEKRE 471

Query: 617 -DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            ++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G   A  L+ +P+ 
Sbjct: 472 LNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFV 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  E  E I F A+ +S+ELA+E G Y +F GS   +G+   D           
Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFAGSPASEGILQFDMWKN------- 584

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            A   + R  W  LK++V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI    
Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILAINGMPDDLRELYRTVWEIPQRK 703

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R ++IDQ+QSLNL+L  P+  ++  +   +W  GLKT  YYLR+++A    K 
Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYSWEAGLKTGVYYLRTKAAADAIKF 763

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K           ++         +   EC  C
Sbjct: 764 TVDAKRMK-----EIQERETSQQTMSSHRASQPEECLNC 797



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 8/58 (13%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
          +IKRNG    +D SKI     + F  V         R    +  LTE     L    +
Sbjct: 8  IIKRNGEAQPYDASKI----RRRFERVMEGLD----RDHLDVDMLTENVTRGLTDQIR 57


>gi|322500426|emb|CBZ35503.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 799

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/819 (34%), Positives = 435/819 (53%), Gaps = 41/819 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204
           I+  +G    +++ ++    E    GL    +   ++     + + D +    L+  +  
Sbjct: 8   IIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   + K P+Y ++  R     L ++   ++ +          + L+     +      
Sbjct: 68  TAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLET--------FRLLHDHVTVQTNRPAP 119

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319
                   +M      L + + Y RD  FE+ G + L   Y L I         +E PQ 
Sbjct: 120 LIADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378
            FMRVA+G+   + +      E Y+L+S   F  +TPTLFN+GT  PQ+SSCFL  +  D
Sbjct: 180 MFMRVALGIHGADLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V
Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296

Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           +QGG KRKGA   YLE WH DV  FL L++NTG D +R  D+  A WIPDLFM+RV    
Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            WTL  P+    L D YG+EFE  YE YE      E +  + I A  +W  +L    ETG
Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615
            P++ +KD CN +S Q+++G +  SNLCTEI   +S +ETAVCNL SI L         +
Sbjct: 412 GPFVLYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKRE 471

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L +  +   R L+ VID N + +E A++SN  +R IGLG+ G   A  L+ +P+ 
Sbjct: 472 FNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFV 531

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  E  E I F A+ +S+ELA+E G Y +F GS   +G+   D           
Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKN------- 584

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            A   + R  W  LK++V  +GMRNS  +A  PTA+ + I G ++  +P   N+YV+  +
Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +LV +L  R LW+E+M +++  ++GSI  I  +PDDL++++ T +EI    
Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRK 703

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R ++IDQ+QSLNL+L  P+  ++  +    W  GLKT  YYLR+++A    K 
Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKF 763

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+     K     + +  +S  ++    + +   EC  C
Sbjct: 764 TVDAKRMK----EIQERENSQQTMSSHRA-SQPEECLNC 797


>gi|224001624|ref|XP_002290484.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
 gi|220973906|gb|EED92236.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
          Length = 811

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/840 (30%), Positives = 421/840 (50%), Gaps = 62/840 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG L   +  ++   ++   + L    +S   + +      Y  L   +++T  
Sbjct: 1   MYVTKKDGRLELLDKNKILQRLQSLSTNLSTPYLSLPTLATSILHGTYPNLPTREIDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ ++  + P+Y ++ AR       +    +  K        E            ++ 
Sbjct: 61  SETAASMSTQHPDYGRLAARICASANHKSTPDSFSKAMLLLN-EEGGGFVNNEIADLVKR 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
                             + + +K+ERDF   Y G + L   Y L     + +E  Q  +
Sbjct: 120 RG--------------KEIDDRIKHERDFEMTYFGYKTLERSYLLKLNEDTIVERIQYLW 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+        + A E Y+L+S  +F  ++PTLF++GT HPQLSSCFL  + DD +
Sbjct: 166 MRVALGIHC--YANLQAAFETYDLMSRGYFTHASPTLFHAGTTHPQLSSCFLVQMSDDSI 223

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L+  A+++K +GG+G     +R  G  I GT G S G++P L+V + T+  V+Q
Sbjct: 224 NGIYDTLKRCAVISKAAGGIGLCVHKIRARGTFIKGTRGVSNGLVPMLRVFDVTSHYVDQ 283

Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           GG KR GA   YLE WH D+ + L+L+KN G + +R  ++    W+PDLFMKRV ++  W
Sbjct: 284 GGGKRPGAFAIYLEPWHADIFDVLNLKKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVW 343

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           +L  P     L + +G++FE  Y  YE      + +  R++ A  LW  +L    ETG P
Sbjct: 344 SLMCPHRCPGLSECHGEKFEELYAKYE-----SDGRYTRQVRARELWAAILEAQIETGTP 398

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----- 614
           ++ +KD  N +S QQ++G +  SNLCTEI   ++ EE AVCNL SI L     ++     
Sbjct: 399 YLLYKDAANKKSNQQNLGTIQCSNLCTEIIQYTNEEEVAVCNLASICLPKFVVSDRGNFG 458

Query: 615 -------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   FD+++L    +   + LD VID+N + IE AKKSN +HR +G+G+ G     
Sbjct: 459 STEGSGAYFDHEQLHKVAKIVTKNLDKVIDVNQYPIEGAKKSNRSHRPVGIGVSGLADTF 518

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L +P+AS EA  + +   E I   ++ AS E+A+E+G+Y +F GS   +G    +  G
Sbjct: 519 LRLGLPFASEEAKTLNEAIFETIYHASLEASNEIAREKGSYETFAGSPASEGKLQFNLWG 578

Query: 728 LLAEVRDELAMNRTS-------------RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +          ++++                W+ L++ +   G+RNS  +A  PTA+ + 
Sbjct: 579 VDDVETPSHRKDQSALAFQKYSTQVNGGGYDWETLRQNIIEGGLRNSLLVAPMPTASTSQ 638

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I GV++  +P   NLYV+   +G+F +VN  L+ +L    LW++++ + L    GS+  I
Sbjct: 639 ILGVNECFEPFASNLYVRRVKAGEFIIVNPHLIQDLTDLGLWNQSVRNQLMRDGGSVAKI 698

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           E +PD LK ++ T +E+    +I+ A+ R K+IDQ+QSLNL++ +P+  KL  ++  AW 
Sbjct: 699 ECVPDRLKGLYKTVWEMKMKDVIDMAADRGKFIDQSQSLNLFIADPTVDKLTAMHFYAWK 758

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            GLKT  YYLR+R A +  + T++             P           +      C  C
Sbjct: 759 KGLKTGIYYLRTRPAVNAIQYTVEKD---------ALPEVDASPQQNIPTLDDSETCLSC 809


>gi|145596897|ref|YP_001161194.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           tropica CNB-440]
 gi|145306234|gb|ABP56816.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           tropica CNB-440]
          Length = 909

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/849 (38%), Positives = 463/849 (54%), Gaps = 58/849 (6%)

Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET 185
           +  RA    + ++      + +   +G     +  ++   VE   + L +V    V ++T
Sbjct: 99  TRERATNGPAGAEQRRQ-VMGVRKRNGDTEPVDVNKIVRAVERWVADLDEVDPLRVATKT 157

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
              +YDG + ++L+   I ++  LI +EP Y+K+ AR L   + +EV             
Sbjct: 158 ISGLYDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQQVAS------ 211

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILY 302
                     F + I       L+ +    F   +   L + +    D  FEY GL+ + 
Sbjct: 212 ----------FSQSIRYAHGLGLISDETAAFVSRNARKLDDAVDPAGDLRFEYFGLRTVA 261

Query: 303 DRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           DRY L    SR  +E PQ + +RVA GL+    E    A+ FY L+SS  ++ S+PTLFN
Sbjct: 262 DRYLLRHPQSRLVVETPQYWLLRVACGLSGTPAE----AIGFYRLMSSLAYLPSSPTLFN 317

Query: 361 SGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           SGTRH Q+SSCFL   P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG
Sbjct: 318 SGTRHTQMSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGIAWSRVRGRGALIRGTNG 377

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S G++PFLK  +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++
Sbjct: 378 RSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNL 437

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N ANW+PD FM+RV  +  W+L  P E  +L DLYG+EF+ AY   E+       K  R 
Sbjct: 438 NLANWLPDEFMRRVEADGDWSLIDPSEAPELPDLYGEEFDAAYRVAEK-------KAVRT 490

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEET 597
           + A  L+ +M+  L +TG+ W+TFKD  N  S Q       +H SNLCTEI   ++  ET
Sbjct: 491 VKARDLYGRMMRTLAQTGNGWMTFKDRSNTLSNQTGEPGNTIHLSNLCTEILEVNNDAET 550

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           AVCNLGS+NL AH   +  D++KL  T+RTAV  LD VIDIN +  E+A  SN   R +G
Sbjct: 551 AVCNLGSVNLGAHVTADGVDWEKLRDTVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVG 610

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LGLMG Q A   L +P+ S EA E++    E I   A+  S  LA+  G + ++  +   
Sbjct: 611 LGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAQTRAA 670

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +G    +  G +           +    W  LK RV   G+RNS  +AIAPTATIA+I G
Sbjct: 671 RGDLHPELWGAVP----------SQPQRWAGLKARVGEHGLRNSLLVAIAPTATIASIAG 720

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
             + I+P   NL+ +  MSG+F  VN++LV ELK R LW  ++   +K  +GS+  +  +
Sbjct: 721 CYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARGLWTASIRDQIKRAEGSVQGLAEL 780

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897
           P +++++  TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GL
Sbjct: 781 PAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGL 840

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS------------THSLGIPSSCT 945
           KTTYYLRSR AT ++++T+         V V                  T +  +  S  
Sbjct: 841 KTTYYLRSRPATRIQQATVAVTSTAQPGVAVASSAQPGGAASSISGFAGTDAEALACSLE 900

Query: 946 SDTECEVCQ 954
           +   CE CQ
Sbjct: 901 NPESCEACQ 909



 Score = 38.3 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
             +   +      ++ + + V KRNG     D +KI RA+ +
Sbjct: 99  TRERATNGPAGAEQRRQVMGVRKRNGDTEPVDVNKIVRAVER 140


>gi|126327914|ref|XP_001363871.1| PREDICTED: similar to LOC505537 protein [Monodelphis domestica]
          Length = 804

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/836 (33%), Positives = 442/836 (52%), Gaps = 61/836 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL  + V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMEFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY        + 
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPYNSKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDVVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---KDDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+DV EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L D++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDDVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L       + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTLEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I + A+ AS ELA+E G Y +++GS   +G+   D             + 
Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574

Query: 740 RTSRLPWDELKKRVKTI---GMRNSNCMAI----APTATIANICGV-------------- 778
            T    W  LK+++      G+RN   +        T T++ +                 
Sbjct: 575 PTDLWDWKVLKEKIAKYLDGGIRNELLITAGHYKPSTNTLSFLSNSEFLSPKLGSLGLSY 634

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + S      + +V         +VN  L+ +L +R LW+E M + +   +GSI +I  IP
Sbjct: 635 TCSFYCFISHHFV--------QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIP 686

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           +DLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLK
Sbjct: 687 EDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 746

Query: 899 T-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T  YYLR+R A +  + TL     K     + D     ++  +  S  +  EC +C
Sbjct: 747 TGMYYLRTRPAANPIQFTLNKEKLKEKEKVLKDEEKERNTAAMVCSLENRDECLMC 802


>gi|312385901|gb|EFR30291.1| hypothetical protein AND_00204 [Anopheles darlingi]
          Length = 775

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/768 (36%), Positives = 417/768 (54%), Gaps = 29/768 (3%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           +  V    +  +    +Y G++  +L+     ++ T+     +YA + AR  +  L +E 
Sbjct: 1   MDFVDPVAITLKVINGLYSGVTTQELDNLAAETAATMTTDHADYAILAARLAVSNLHKET 60

Query: 233 LTTVYKKP-------QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
                 K        Q++    M  LY         +       H  ++  +   L + +
Sbjct: 61  KKQFSGKRMTPLVIRQESLEKVMHDLYMMENEFLKTKSPMISNTHYKLIMENADRLNSAI 120

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            Y+RDF + Y G + L   Y L I G  +E PQ   MRVA+G+     E    A+E YNL
Sbjct: 121 IYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHMLMRVAIGIHG---EDIDSAIETYNL 177

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404
           LS  +F  ++PT+F + T+ PQLSSCFL T+ DD + GI+  L++ A+++K +GG+G + 
Sbjct: 178 LSERYFTHASPTMFAAATQRPQLSSCFLLTMSDDSIEGIYDTLKQCALISKSAGGIGLNV 237

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
             +R  G +I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH DV EFL
Sbjct: 238 HCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHGDVFEFL 297

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           DL+KNTG +  R  DM  A WIPDLFM+RV  N  W+L  P +   L + +G+EFE  Y 
Sbjct: 298 DLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMCPHDCPGLSETWGEEFEKLYT 357

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            YER     E +  R++ A  LW  ++    ETG P++ +KD CN +S QQ++G +  SN
Sbjct: 358 GYER-----EGRFTRQVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQNIGTIKCSN 412

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHT 642
           LCTEI   SS +E AVCNL SI L      ++ +D+ KL    +T  + L+ +IDIN + 
Sbjct: 413 LCTEIVEYSSKDEIAVCNLASIALNMFVKPDRTYDFAKLKEVAKTVTKNLNKIIDINYYP 472

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +AK+SN  HR IG+G+ G   A  L+  PY S EA  +  +  E I F A+ AS ELA
Sbjct: 473 VPEAKRSNMRHRPIGIGVQGMADAFILMRHPYESEEAQLLNQQMFETIYFGALEASCELA 532

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            + G Y S+ GS   +G+   D                T    W ELK+ + T G+RNS 
Sbjct: 533 AQDGPYESYDGSPVSKGILQYDMWEKKP----------TELWDWAELKRNIVTHGVRNSL 582

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  L+ +L + +LWD+ M +
Sbjct: 583 LLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELWDDEMKN 642

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            +   +GSI  IE IP  ++ ++ T +EI     I+ A+ R  +IDQ+QS N+++ EP+ 
Sbjct: 643 KILAQNGSIQKIEEIPQHIRNLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIHVAEPNY 702

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            KL  I+   W MGLKT  YYLR++ A +  + T+     +  A    
Sbjct: 703 GKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKSKLQNGATESN 750


>gi|320107275|ref|YP_004182865.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
           saanensis SP1PR4]
 gi|319925796|gb|ADV82871.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
           saanensis SP1PR4]
          Length = 815

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/824 (39%), Positives = 473/824 (57%), Gaps = 39/824 (4%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
                 P + +   +G L   +  ++   V+    GL  V +  + S+T   +YDG +  
Sbjct: 23  PAREEMPTMGVRKRNGALEPVDVNKIVRAVQRNAHGLGQVDAIRIASKTIGGLYDGATTR 82

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L++  I ++ +LI +EP Y+K+ AR LL  + +EV+         +    +   Y E  
Sbjct: 83  ELDSISIDTAASLIAEEPQYSKLAARLLLGTIMKEVVGQ----NLHSFSQSISYGYQEGV 138

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRI 314
                            +   +  L + +  E    FEY GL+ +YDRY L        I
Sbjct: 139 VS---------KATAEFVQTHMRKLNHAINDELSDRFEYFGLRTVYDRYLLRDPISRKVI 189

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-L 373
           E PQ FF+RVA GLA         A+EFYNL++S  +M S+PTLFNSGT+H Q+SSC+  
Sbjct: 190 ETPQHFFLRVACGLAGTP----HEAIEFYNLIASHDYMPSSPTLFNSGTKHAQMSSCYLH 245

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            +  D L  I+   +  A+L+K+SGG+G  +  VR  G+ I  TNG S G++P+L+  + 
Sbjct: 246 DSPLDSLDSIYDTYKNVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDS 305

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +  AVNQGGKRKGA C YLE WH D+E FL+LR+NTGD  RRT+++N ANWIPDLFM+RV
Sbjct: 306 SVAAVNQGGKRKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMQRV 365

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  W+LF P EV    DLYGKEFE AY   E      + K  R+I A  L+ +M+  L
Sbjct: 366 DEDGIWSLFDPKEVPTFPDLYGKEFEEAYIQAE-----TDKKYHRQIKARDLYMRMMRSL 420

Query: 554 FETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            ETG+ W+TFKD CNI++ Q  +   VVH SNLCTEIT  +S +ETAVCNLGS+NL  H 
Sbjct: 421 AETGNGWMTFKDACNIKNNQTGKPGNVVHLSNLCTEITEVTSKDETAVCNLGSVNLARHV 480

Query: 612 ANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               +FD++KLA+T+R AV +LD VIDIN + + +A  +N   R +GLG+MG Q     +
Sbjct: 481 TPEGKFDFEKLANTVRIAVPMLDRVIDINYYPVPQAASANARWRPVGLGVMGLQDVFFQM 540

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            IP+ SPEA+ I+ +  E I ++A+ ASVELA+  G + SF  +   +G F  D      
Sbjct: 541 RIPFDSPEALAISTKIQEEIYYYAVLASVELAEREGKHPSFDETRLAKGEFQFDLWN--- 597

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                  +       WD L++R+   G+RNS  +AIAPTATIA+I G  + I+P   NL+
Sbjct: 598 -------VKPADPERWDALRQRILKSGIRNSLLIAIAPTATIASIVGCYECIEPQISNLF 650

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F  VN +L+ ELKQR +W E M   +K  +GS+  +E +P+DL+ ++ T +E
Sbjct: 651 KRETLSGEFLQVNRYLIEELKQRGMWTEEMRVRMKMSEGSVQAMEDLPEDLRAVYRTVWE 710

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +    LI+ A  R  +IDQ+QSLNL+ + P+  +L  +Y  AW  GLKTTYYLRSR AT 
Sbjct: 711 VPMRSLIDMARDRNAFIDQSQSLNLFAESPNIGRLSSMYMHAWKSGLKTTYYLRSRPATK 770

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSS-THSLGIPSSCTSDTECEVC 953
           + K+T+        A+  T        +  I  S  +   CE C
Sbjct: 771 ISKTTVSKAAAASAALADTASRPKVADAEAIACSLENPESCEAC 814



 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 1  MHPSKDVNKGDEDAFPSLAYPFP--EKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          M  +   +   + +   L   FP  E++  + V KRNG +   D +KI RA+ +
Sbjct: 1  MAATTTNHNQIQTSLSDLTPSFPAREEMPTMGVRKRNGALEPVDVNKIVRAVQR 54


>gi|50955340|ref|YP_062628.1| ribonucleotide-diphosphate reductase subunit alpha [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951822|gb|AAT89523.1| ribonucleoside-diphosphate reductase, alpha chain [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 896

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/829 (38%), Positives = 469/829 (56%), Gaps = 24/829 (2%)

Query: 115 TREYVLY--REERSDVRAAQS--------HSKSDAPIAPKLKIMMDDGTLISFNSKRLEM 164
              Y++   R+ R+  R A++         S +       + ++  +G    +++ ++ +
Sbjct: 22  APRYIVVERRDARTCPRGAEAVSHDFAARPSGTHRGENVAITVVKRNGEREPYDANKINL 81

Query: 165 IVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +E A +GL +       + SE    ++DG++   L+ A+I  +   ++ +P +  V AR
Sbjct: 82  AIEHAAAGLDENITWVTQIASELELTLFDGITTQQLDEAVIQVALQNVKDDPAFDIVAAR 141

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYL 281
            LL+ + + VL           + E+  L+  +F  YIE GV   LL       FDL  L
Sbjct: 142 LLLKIIYKRVLGDYA-SGTDGDNAELVELHARHFRGYIERGVSETLLDSRFTGLFDLDRL 200

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           A  L   RD   +Y+G+  L +RY +   NG  +E+PQ F+MR+AMGL+L ET+    A+
Sbjct: 201 AGHLDPSRDELLKYIGVVTLNNRYGIKARNGDSLEVPQYFWMRIAMGLSLNETDPTSHAI 260

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            FY+ +S   ++ +  TL N+GT +PQLS+CF+  + DD+  I  ++++   L K +GG+
Sbjct: 261 AFYHKMSKLEYLAAGSTLVNAGTAYPQLSNCFVMEMQDDIEHIAKSVRDVMWLTKGTGGI 320

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G   T +R  G+ I   N  S G IPF+   +    AV++GGK+ GA+C Y+E WH+D  
Sbjct: 321 GLSVTKLRSQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALCFYMENWHLDFP 380

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLDLR+N+GD  RRT   NTA W  D FMKRV  +  W LF P EV+DL++LYGK F  
Sbjct: 381 EFLDLRQNSGDPYRRTRTANTAVWTSDEFMKRVQNDQDWYLFDPLEVADLNELYGKAFSE 440

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y  Y   A+ GE+++F+KISA A ++ +L  L  T HPW+T+KD  N R+   + G +H
Sbjct: 441 RYAEYAVMAEAGELRMFKKISARAQFKDILMSLQTTSHPWLTWKDTINNRALNNNTGAIH 500

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDKLASTIRTAVRVLDN 634
            SNLCTEITL    +  +VCNL SINL  H  +       + D+ +L  + R AVR LDN
Sbjct: 501 LSNLCTEITLPQDRDNVSVCNLASINLSRHLVDGERANGLEMDWARLEESARQAVRQLDN 560

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           +IDI   ++ +A  SN  +RAIGLG+MGF   +  L   Y S EA  + DE ME +S+ A
Sbjct: 561 LIDITVSSVPEADFSNQQNRAIGLGVMGFTDVVERLGFSYESEEAYALIDEIMEHVSYAA 620

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753
           I  S +LAQERGAY +F+GS W QG+ P DSI L    R   + ++RT RL WD L+++V
Sbjct: 621 IDESADLAQERGAYPNFEGSRWSQGLVPYDSIALAEADRGIPITVDRTIRLDWDRLREKV 680

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              GMRN+  MAIAPTA+I  + G +   DP +  ++ +S  SG F  VN  LV  L++R
Sbjct: 681 -KGGMRNATLMAIAPTASIGLVAGTTPGFDPQFSQIFSRSTSSGKFLEVNRNLVEALQER 739

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW E     +    G I  I  IPD++K    T+F++ P   IE A+R QKWIDQA S 
Sbjct: 740 GLW-EETRESILRSQGDIQGIAAIPDEIKAAFKTSFQLSPHAFIEVAARAQKWIDQAISR 798

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           N+YL+      +  IY  AW  G+KTTYYL  +     E+ST+K    +
Sbjct: 799 NMYLETRDIGDMMDIYAAAWEKGVKTTYYLHMKPRHQAEQSTVKVNKSE 847



 Score = 43.3 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 13/107 (12%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKG----VQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
             ++   +G E      A       +G    + V+KRNG    +D +KI+ AI  A   +
Sbjct: 31  RDARTCPRGAEAVSHDFAARPSGTHRGENVAITVVKRNGEREPYDANKINLAIEHAAAGL 90

Query: 58  EGKGASRSIRVQD---------IIKNLTEQTVTRLLQHNKSALIVHI 95
           +      +    +           + L E  +   LQ+ K      I
Sbjct: 91  DENITWVTQIASELELTLFDGITTQQLDEAVIQVALQNVKDDPAFDI 137


>gi|302867101|ref|YP_003835738.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569960|gb|ADL46162.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           aurantiaca ATCC 27029]
          Length = 798

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/821 (38%), Positives = 451/821 (54%), Gaps = 43/821 (5%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
               P +++   DG     +  ++   VE   + L +V    V ++T   +YDG + ++L
Sbjct: 16  ETRRPAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAEL 75

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +   I ++  LI +EP Y+K+ AR L   + +EV                   Y      
Sbjct: 76  DRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQ------GVASFSQSIAYAHGLGL 129

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316
                          +      L + +  + D  FEY GL+ + DRY L    SR  +E 
Sbjct: 130 I-------GDETAGFVARHARKLDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLVVET 182

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ + +RVA GL+    E       FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL   
Sbjct: 183 PQYWLLRVACGLSRTPGEAVG----FYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDS 238

Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++PFLK  +   
Sbjct: 239 PRDELDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGV 298

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            AVNQGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV  
Sbjct: 299 AAVNQGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEA 358

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+L  P +  +L DLYG+ F+ AY   E+ A        R + A  L+ +M+  L +
Sbjct: 359 DGEWSLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQ 411

Query: 556 TGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           TG+ W+TFKD  N  S Q      V+H SNLCTEI   +   ETAVCNLGS+NL AH   
Sbjct: 412 TGNGWMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTA 471

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D+++L +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q A   L +P
Sbjct: 472 DGVDWERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLP 531

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S +A E++    E I   A+  S  LA+  G + ++  +   +G    D  G      
Sbjct: 532 FDSAQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEPAQA 591

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                       W  L++R+   G+RNS  +AIAPTATIA+I G  + ++P   NL+ + 
Sbjct: 592 GR----------WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRE 641

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            MSG+F  VN++LV ELK R LW   +   +K  +GS+ +I  +P  ++++  TA+E+  
Sbjct: 642 TMSGEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQ 701

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             LI+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLRSR AT +++
Sbjct: 702 RALIDLAAARAPFIDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQ 761

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +T+  V   ++ V        +    +  S  +   CE CQ
Sbjct: 762 ATVAPVLAPVSGVVSA----VSDDEALACSLENPESCEACQ 798



 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          +++ PS       +   ++V KR+G     D  KI RA+ +
Sbjct: 5  QESPPSGTGGSETRRPAMRVRKRDGDTEPVDVGKIVRAVER 45


>gi|145497945|ref|XP_001434961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402089|emb|CAK67564.1| unnamed protein product [Paramecium tetraurelia]
          Length = 840

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/824 (32%), Positives = 439/824 (53%), Gaps = 41/824 (4%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
            H +  A       ++  DG   + + +++   ++   S LQ ++  +++ +  + MY+G
Sbjct: 10  EHLQELAKQKNISYVLKRDGGKQNIDIQKIAERLQNLASNLQHININLIMWKVIQGMYEG 69

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++   L+     +   +    P Y+ + AR  +  L +E   +  +   K          
Sbjct: 70  ITTVQLDNLAAETCAYMNLVHPQYSLLAARIAVNNLHKETSESFSEVATKLHSFT----- 124

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                +Y             ++  +   + N++ Y+RD+ +++ G + L   Y L     
Sbjct: 125 ----DKYGRPAPLIADDVYKIIMENKDIIQNEINYDRDYQYDFFGFKTLERSYLLKEGKK 180

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE PQ   MRV++G+     E  + A + Y+L+S  +F  +TPTLFNSGT +PQ+SSCF
Sbjct: 181 PIERPQQLLMRVSIGIH---KEDLQSAFQTYHLMSQKYFTHATPTLFNSGTPYPQMSSCF 237

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L  +  D + GI+  L+  A+++K +GG+G   + +R   ++I GTNG S G++P LKV 
Sbjct: 238 LLDMVDDSIEGIYETLKRCALISKSAGGIGLSASKIRSQDSYIRGTNGISNGLVPMLKVF 297

Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           NDTA  V+QGG KRKG+   YLE WH D+  FL LRKN G + +R  D+    WIPDLFM
Sbjct: 298 NDTARYVDQGGGKRKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFM 357

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  ++ WTL  P+E   L D YG+EF   Y +YE +      +V   + A  LW++++
Sbjct: 358 QRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYTDYESKNM---GRV--TMKARQLWQEII 412

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
                TG P++ +KD CN +S Q+++G + SSNLCTEI   +S +E AVCNL SINL   
Sbjct: 413 DAQISTGLPYMLYKDACNSKSNQKNLGTIKSSNLCTEIIQYTSPDEIAVCNLASINLQKL 472

Query: 611 FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              ++ FD+DKL    +     L+ VID+N + +++A+ SN  +R IG+G+ GF  AL  
Sbjct: 473 IKEDKTFDFDKLLEITKIITINLNIVIDLNFYPVKQAEYSNKRNRPIGIGVQGFADALQR 532

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + IP+ S +A+E+  +  E I + A   S+ELAQ+ G Y +F GS   QG+   D  G+ 
Sbjct: 533 MKIPFDSEDALELNAKIFETIYYGACQTSLELAQKLGPYETFTGSPASQGILQFDMWGVS 592

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ LK+ +   GMRNS  +A  PTA+ + I   ++S +P   N+
Sbjct: 593 PK-----------LYDWNTLKQNIAKHGMRNSLLIAPMPTASTSQILQNNESFEPYTTNI 641

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  ++G+F  +N  LV++L + +LW   + + L  ++GS+ NIE IP+++K ++ T +
Sbjct: 642 YTRRVLAGEFVCINPHLVDDLIELNLWTPQIKNKLIMNNGSVQNIEEIPNNIKSLYKTVW 701

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG----------LKT 899
           EI    ++  A+ R  +IDQ+QSLN+++ EP+  K+  ++  A   G          +K 
Sbjct: 702 EISQKAILNLATSRAPFIDQSQSLNIHMAEPTMSKVTSMHFYAGRKGVKNRYILYITIKG 761

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            YYLR+R A    K T+           +   +S    +   +S
Sbjct: 762 MYYLRTRPAADPIKFTVDVEALLKEGGQIKIQSSKQELIDESAS 805


>gi|315506489|ref|YP_004085376.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. L5]
 gi|315413108|gb|ADU11225.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. L5]
          Length = 798

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/824 (38%), Positives = 456/824 (55%), Gaps = 49/824 (5%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
               P +++   DG     +  ++   VE   + L +V    V ++T   +YDG + ++L
Sbjct: 16  ETRRPAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAEL 75

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +   I ++  LI +EP Y+K+ AR L   + +EV                       F +
Sbjct: 76  DRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQGVAS----------------FSQ 119

Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313
            I       L+ +    F       L + +  + D  FEY GL+ + DRY L    SR  
Sbjct: 120 SIAYAHGLGLIGDETAAFVARHARKLDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLV 179

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +E PQ + +RVA GL+    E       FY L+SS  ++ S+PTLFNSGTRH Q+SSCFL
Sbjct: 180 VETPQYWLLRVACGLSRTPGEAVG----FYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFL 235

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++PFLK  +
Sbjct: 236 VDSPRDELDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLD 295

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
               AVNQGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANW+PD FM+R
Sbjct: 296 AGVAAVNQGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRR 355

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  W+L  P +  +L DLYG+ F+ AY   E+ A        R + A  L+ +M+  
Sbjct: 356 VEADGEWSLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRT 408

Query: 553 LFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           L +TG+ W+TFKD  N  S Q      V+H SNLCTEI   +   ETAVCNLGS+NL AH
Sbjct: 409 LAQTGNGWMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAH 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              +  D+++L +T+RTAV  LD VIDIN +  E+A  SN   R +GLGLMG Q A   L
Sbjct: 469 VTADGVDWERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTL 528

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ S +A E++    E I   A+  S  LA+  G + ++  +   +G    D  G   
Sbjct: 529 RLPFDSAQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEP 588

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                          W  L++R+   G+RNS  +AIAPTATIA+I G  + ++P   NL+
Sbjct: 589 AQAGR----------WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLF 638

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  MSG+F  VN++LV ELK R LW   +   +K  +GS+ +I  +P  ++++  TA+E
Sbjct: 639 KRETMSGEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWE 698

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +    LI+ A+ R  ++DQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYLRSR AT 
Sbjct: 699 LPQRALIDLAAARAPFVDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATR 758

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           ++++T+  V   ++ V        +    +  S  +   CE CQ
Sbjct: 759 IQQATVAPVLAPVSGVVSA----VSDDEALACSLENPESCEACQ 798



 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52
          +++ PS       +   ++V KR+G     D  KI RA+ +
Sbjct: 5  QESPPSGTGGSETRRPAMRVRKRDGDTEPVDVGKIVRAVER 45


>gi|195456500|ref|XP_002075166.1| GK23355 [Drosophila willistoni]
 gi|194171251|gb|EDW86152.1| GK23355 [Drosophila willistoni]
          Length = 768

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/787 (35%), Positives = 414/787 (52%), Gaps = 36/787 (4%)

Query: 162 LEMIVEEACSGLQ------DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
           +  +   +  G+        V    +  +    +Y G++  +L+      +  L     +
Sbjct: 8   IRCVAFRSSRGIDIGFSAIPVLEVSITLQVINGLYCGVTTQELDNLAAEIAAGLTCNHAD 67

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           YA + AR  +  L +E         +K      + LY                 H +++ 
Sbjct: 68  YAILAARIAVSNLHKET--------KKVFSEVFEELYHHVNKETNNPSPMVSSYHYNIVK 119

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +   L + + Y+RDF + Y G + L   Y L ING   E PQ   MRVA+G+     E 
Sbjct: 120 NNADRLNSAMIYDRDFGYNYFGFKTLERSYLLKINGKVAERPQHMLMRVAIGIHG---ED 176

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
              AVE YNLLS  +F  ++PTLF + T  PQLSSCFL T+  D + GIF  +++ AM++
Sbjct: 177 IDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTSDSIEGIFKTVEQCAMIS 236

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453
           K +GG+G +   +R  G  I GTNG S G++P L+V N+ A  V+QGG KR GA   YLE
Sbjct: 237 KSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLE 296

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+ EFLDL++NTG +  R  D+  A WIPDLFMKRV  N  W+L  P +   L D+
Sbjct: 297 PWHSDIFEFLDLKRNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMCPHKCPGLEDV 356

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G +FE  Y  YE++     I     + A +LW  ++    ETG+P++ FKD CN +S Q
Sbjct: 357 WGDKFEELYVKYEKEGLANRI-----VKAQSLWFAIIESQVETGNPYMLFKDSCNKKSNQ 411

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVL 632
           Q+VG +  SNLCTE+   S+ +E AVCNL SI L      +  +D+ KL    +   + L
Sbjct: 412 QNVGTIKCSNLCTEVVEYSAPDEIAVCNLASIALNMFVTTDKTYDFKKLKEVTKIVAKNL 471

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + +ID+N + + +AKKSN  HR IG+G+ G   AL L+ +PY S +A  +  +  E I F
Sbjct: 472 NKIIDVNYYPLPEAKKSNLKHRPIGIGVQGLADALILMRLPYESKQACLLNQQIFETIYF 531

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ AS ELAQ  G Y +FKGS   +G+   D                +    W++LK  
Sbjct: 532 GALEASCELAQMYGPYETFKGSPASRGILQYDMWNKKP----------SDLWDWNKLKAA 581

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+RNS  +A  PTA+ A I G ++S +P   N+Y +  +SG+F VVN  L+ +L +
Sbjct: 582 IKEHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTE 641

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            DLWD+ M + +    GSI NIE IP +++ ++ T +EI     I+ A+ R  +IDQ+QS
Sbjct: 642 LDLWDDDMKNKIVSSRGSIQNIEVIPQNVRDLYKTVWEISVKSTIKMAADRGAFIDQSQS 701

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            N+++ EP+  KL  I+  +W  GLKT  YYLR++ A    + T+               
Sbjct: 702 FNIHVAEPNYGKLTSIHFYSWKSGLKTGMYYLRTKPAAHAIQFTVDKNASATIISSQNGS 761

Query: 932 NSSTHSL 938
             +    
Sbjct: 762 IKAEKKC 768


>gi|290984045|ref|XP_002674738.1| ribonucleotide reductase [Naegleria gruberi]
 gi|284088330|gb|EFC41994.1| ribonucleotide reductase [Naegleria gruberi]
          Length = 812

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/824 (33%), Positives = 444/824 (53%), Gaps = 34/824 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+   G    F+S+++ + +++    L  ++   ++ +    +++ ++   L+  +    
Sbjct: 4   IVKKSGEKELFSSEKIRIRLQDHTKDLYHINIDSIIEKLQLEIHNDITTEKLDNLIAECI 63

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
             +    P+Y K+  R  +  L +   +   +      +            R        
Sbjct: 64  AYMAYSHPDYLKLAGRVKVSTLHKHTKSKFSEVVHDLRNF--------IHPRTNLPSPLI 115

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
                +++  ++  L   +K ERDF F+Y G + L   Y L   +    E PQ  FMRV+
Sbjct: 116 SEEVFNVVAANVDVLDQAIKSERDFQFDYFGYKTLERSYLLKLADSRIAERPQHMFMRVS 175

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384
           +G+   + E+   A++ Y+LLSS  F+ ++PTLFN+GT  PQ+SSCFL ++ DD ++GI+
Sbjct: 176 LGIHGGDIER---AIQTYDLLSSGMFIHASPTLFNAGTPIPQMSSCFLVSMKDDSIHGIY 232

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443
             L+  A+++K +GG+G     +R  G++I GTNG S G+IP L+V NDTA  V+QGG K
Sbjct: 233 DTLKTCALISKSAGGIGLSVHNIRASGSYIRGTNGTSNGLIPMLRVFNDTARYVDQGGGK 292

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGA   YLE WH D+ +FLDLRKN G +  R  D+    W+ DLFM+RV  +A W+LF 
Sbjct: 293 RKGAFAIYLEPWHSDIFDFLDLRKNHGKEEIRARDLFLGLWVNDLFMQRVKDDAEWSLFC 352

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L D++G+EF   Y  YER     E K  R I A  LW  ++    ETG P++ +
Sbjct: 353 PNEAQGLADVWGEEFNQLYTKYER-----EGKAKRTIKAQELWFAIIEAQIETGVPYMLY 407

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKL 621
           KD CN +S QQ++G + SSNLCTEI   ++ +E AVCNL SI L  +       +D+ KL
Sbjct: 408 KDSCNRKSNQQNLGTIKSSNLCTEIIEFTAPDEVAVCNLASIALPKYVNEETQTYDHQKL 467

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              ++ A   L+ +ID N + +E+AKKSN  HR IGLG+ G   A   + +P+ S EA  
Sbjct: 468 YEVVKIATYNLNKIIDKNYYPVEEAKKSNFRHRPIGLGVQGLADAFIKMRLPFESEEAKN 527

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  E  E I F A++ S+ELA+  G Y +++GS   +G+F  +      E  +   +  +
Sbjct: 528 LNREIFETIYFAAMTCSMELAKVEGTYETYEGSPISKGIFQHEFWTREGEPFEGKTI-TS 586

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R  W+ L+++V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG++ V
Sbjct: 587 GRWDWEGLRQQVLQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNVYTRRVLSGEYPV 646

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +N  LV +L + D+W+  +++ +  + GSI NI+ IPDD+K+++ T +EI    L++ A 
Sbjct: 647 INRHLVADLIKIDMWNPTIVNQIIGNRGSIQNIQGIPDDIKELYKTVWEIKQRSLLDLAI 706

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLN+++  PS  K+  ++  AW  GLKT  YYLR++ A    + T+    
Sbjct: 707 ERSPFIDQSQSLNVFISIPSVSKMSSMHFYAWSKGLKTGMYYLRTQPAADAIQFTVDPNM 766

Query: 921 GKLNAVPVTDPNSSTHSL-----------GIPSSCTSDTECEVC 953
            K +                           P     + EC VC
Sbjct: 767 MKQSVSTSQAEEPKQEEEVIVCKRKKRGQAPPEGEEDEEECLVC 810


>gi|320581724|gb|EFW95943.1| ribonucleotide reductase large subunit Rnr1 [Pichia angusta DL-1]
          Length = 816

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/839 (33%), Positives = 433/839 (51%), Gaps = 52/839 (6%)

Query: 141 IAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSES 196
            A    I+ D   G    F+   L   +     GL  + VS  ++L +    + + L+  
Sbjct: 2   TADTKTIVKDSKSGKESVFSRDILRNHLLSLAQGLNTEFVSIDVILDKVVSGLPESLTVQ 61

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L       S +L     +++ + AR L+  L+++V  +  +   +   +         F
Sbjct: 62  ELLDLTAEVSASLTTVHYDHSYLAARVLVRHLQKQVCGSFSENVNRMRQYRPSQY--RSF 119

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
              I   V        +++     L   + ++RD   +Y G + +   Y L ++G   E 
Sbjct: 120 KSLIAADVH------EIVNKHADVLNKAIDFDRDLELDYFGFRTMERSYLLKMDGRPCET 173

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           PQ  FMRVA+G+     E+    +E Y L+S  +F+ ++PTLFN+GT  P LSSCFL  +
Sbjct: 174 PQYLFMRVAVGIHKGNIERV---LETYRLMSQKYFIHASPTLFNAGTETPNLSSCFLLAM 230

Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GIF  + ++A+++K +GG+G   + +R  G++I GTNG S G++P ++V N TA
Sbjct: 231 DGDSINGIFRTIHKSALISKAAGGIGIHVSNIRAAGSYISGTNGTSNGLVPMVQVFNSTA 290

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             V+QG  KR GA C YLE WH DV EFLDLRKN G +  R  D+  A WIPDLFM++V 
Sbjct: 291 KYVDQGGNKRPGAFCMYLEPWHADVFEFLDLRKNHGKEETRARDLFYALWIPDLFMEKVE 350

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LFS D+   L D YG EF   Y  YER     E +  RK+ A  LW  +L    
Sbjct: 351 KDQEWCLFSEDQSPGLSDSYGDEFVKLYNRYER-----EGRYIRKVRAQKLWHAILVAQT 405

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG+P++ +KD CN +S QQ++G + SSNLC EI   SS+EETAVCNLGS+ L +   +N
Sbjct: 406 ETGNPFLLYKDACNKKSNQQNLGTIKSSNLCCEIVEYSSNEETAVCNLGSLALPSFVHDN 465

Query: 615 Q----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           +    FD+  L    +T  R LD VID+  + + +A+ SN  HR I +G+ G       L
Sbjct: 466 KGERKFDFKFLHDVCKTLARNLDTVIDVGSYPLPEAEVSNKRHRPIAIGVQGLADVFFKL 525

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +P+ SPE+ ++     E I   A+  S ELA+  G Y S+ GS   +GV   D      
Sbjct: 526 RMPFGSPESRKLNILIFETIYHAALETSAELAEIYGPYDSYAGSPISKGVLQYDFWNAKP 585

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                     +    W+ LK ++   G+RNS  +A+ PTA+ + I G ++  +P   N+Y
Sbjct: 586 ----------SDMWDWEGLKAKIHRNGVRNSLLVALMPTASTSQIFGFTECFEPITSNMY 635

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN +L+++L    LW   M +++   +GS+  IE IP D K+I+ T +E
Sbjct: 636 SRRVLSGEFQVVNRYLIDDLVDLGLWGPEMKNEILRMEGSVQAIESIPADTKEIYKTVWE 695

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    LI+ A+ R  +IDQ+QS+NL++  P+  KL  ++  AW  GLKT  YYLR+++A 
Sbjct: 696 IQQRALIDMAADRAPFIDQSQSMNLFMRNPTMSKLTSMHFYAWKKGLKTGIYYLRTQAAA 755

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI---------------PSSCTSDTECEVC 953
           S  K T+     K +     D      S G                         C+ C
Sbjct: 756 SAIKFTVTPSRFKRSISESRDTTKRRKSNGNEVTEGYNIYDKDNVLACKVGDPETCDAC 814


>gi|238061573|ref|ZP_04606282.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
 gi|237883384|gb|EEP72212.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
          Length = 792

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/831 (38%), Positives = 458/831 (55%), Gaps = 49/831 (5%)

Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188
           R  Q+ +         +++   +G     +  ++   VE   + L +V    V ++T   
Sbjct: 6   RQEQTAAHQPEQRRQVMQVRRRNGDAEPVDVNKIVKAVERWVADLDEVDPLRVATKTISG 65

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +YDG + ++L+   I ++  LI +EP Y+K+ AR L   + +EV         +      
Sbjct: 66  LYDGATTAELDKLSIQTAAELISEEPQYSKLAARLLAAYVDKEVRGQ------QVASFSQ 119

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y        ++         + +  +   L + +    D  FEY GL+ + DRY L 
Sbjct: 120 SVRYAHGLGLIGDD-------TAAFVARNARKLDDAVDPAGDLRFEYFGLRTVADRYLLR 172

Query: 309 INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
              SR  +E PQ + +RVA GL+    E    A+ FY L+SS  ++ S+PTLFNSGTRH 
Sbjct: 173 QPESRLVVETPQYWLLRVACGLSETPAE----AIGFYRLMSSLAYLPSSPTLFNSGTRHT 228

Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           Q+SSCFL   P D+L  I+    + A L+K+SGG+G  W+ VRG GA I GTNG+S G++
Sbjct: 229 QMSSCFLVDSPRDELDSIYERYHQVAKLSKFSGGIGIAWSRVRGRGALIRGTNGRSNGIV 288

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           PFLK  +    AVNQGG+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANWI
Sbjct: 289 PFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWI 348

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PD FM+RV  +  W+L  P +  +L DLYG+EF+ AY   E+       K  R + A  L
Sbjct: 349 PDEFMRRVEADGDWSLIDPSDAPELPDLYGEEFDAAYRIAEK-------KAIRTVKARDL 401

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           + +M+  L +TG+ W+TFKDP N  S Q       +H SNLCTEI   +S  ETAVCNLG
Sbjct: 402 YGRMMRTLAQTGNGWMTFKDPSNRLSNQTGVPGNTIHLSNLCTEILEVNSDTETAVCNLG 461

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL AH   +  D+ KL ST+RTAV  LD VIDIN +   +A  SN   R +GLGLMG 
Sbjct: 462 SINLGAHVTVDGVDWVKLRSTVRTAVVFLDRVIDINYYPATQAAASNPRWRPVGLGLMGL 521

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q A   L +P+ S  A E++    E I   A+  S  L++  G + ++  +   +G    
Sbjct: 522 QDAFFTLRLPFDSAAARELSTRVQEEIFLTALETSAGLSERFGPHPAYAETRAARGELHP 581

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D  G+            T    W  L+  +   G+RNS  +AIAPTATIA+I G  + I+
Sbjct: 582 DLWGVEP----------TQTERWAALRATIAAHGLRNSLLVAIAPTATIASIAGCYECIE 631

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P   NL+ +  MSG+F  +N++LV ELK   LW   +   +K  +GS+  I+ +P D+++
Sbjct: 632 PQVSNLFKRETMSGEFLQINTYLVRELKAHGLWTPQIRDQIKRAEGSVQGIDDLPADVRE 691

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  TA+E+    LI+ A+ R  +IDQ+QSLNL+L  P+  KL  +Y  AW  GLKTTYYL
Sbjct: 692 LFRTAWELPQRTLIDLAAARAPYIDQSQSLNLFLSAPTIGKLSSMYLYAWKSGLKTTYYL 751

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           RSR AT ++++T+           V    + + +  +  S  +   CE CQ
Sbjct: 752 RSRPATRIQQATV----------AVKPVVAVSDTEALACSLENPESCEACQ 792


>gi|255587584|ref|XP_002534320.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223525502|gb|EEF28063.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 776

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/779 (35%), Positives = 425/779 (54%), Gaps = 51/779 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   +++   GL        +V  +    +Y G++ S L+   
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSMDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR ++  L +          +K+    ++ +Y  +  R   +
Sbjct: 61  AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKVMYNHFNERSGLK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 113 APLIADDVYNIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+     +     ++ Y+L+S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVAVGIH---KDDIDSVIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E A+++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLKECAVISKSAGGIGVSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A W+PDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P+E   L D +G+EFE  Y  YER     E K  + + A  LW ++L    ETG P+
Sbjct: 350 VFCPNEAPGLADCWGEEFERLYTQYER-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611
           + FKD  N +S QQ++G + SSNLCTEI   +S  ETAVCNL SI L             
Sbjct: 405 MVFKDTSNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPMES 464

Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
                       N  FD+DKLA         L+ +ID+N + +E AK+SN  HR IG+G+
Sbjct: 465 HPSKVVGSRGSKNRYFDFDKLAEVTEVVTCNLNKIIDVNYYPVENAKRSNFRHRPIGIGV 524

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   A  LL + + SPEA ++  E  E I +HA+ AS E+A   G Y ++ GS   +G+
Sbjct: 525 QGLADAFILLGMAFDSPEAQQLNKEIFETIYYHALKASSEIAGRDGPYETYDGSPVSKGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
              D  G+            +SR  W+ L++ +   G+RNS  +A  PTA+ + I G ++
Sbjct: 585 LQPDMWGVTP----------SSRWSWNALREMIFKNGVRNSLLVAPMPTASTSQILGNNE 634

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             +P   N+Y +  +SG+F VVN  L+++L +  LW   + + + Y DGS+  I  IPDD
Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPDD 694

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW-LMGLK 898
           LK I+ T +EI    L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  + LK
Sbjct: 695 LKLIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKLFLK 753


>gi|118346189|ref|XP_976850.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila]
 gi|89288340|gb|EAR86328.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila SB210]
          Length = 2928

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/823 (33%), Positives = 430/823 (52%), Gaps = 32/823 (3%)

Query: 133  SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMY 190
                  A       I+      ++ +  R++  +E     L    V+  +++ +    MY
Sbjct: 2074 EELTELAKSKGIHHIINRKNEKMNLDLIRIKERLEALTFNLDRNFVNMDLIIQKVVNGMY 2133

Query: 191  DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            DG+  ++L+     ++  +    P+Y+   AR  +  L +E  ++ ++            
Sbjct: 2134 DGIHTTELDELAAETAAYMTIIHPHYSLFAARIAVSNLHKETSSSFFETISALY------ 2187

Query: 251  LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
                Y  +   +          ++  +   +   + Y+RD+ +++ G + L   Y L I+
Sbjct: 2188 ---NYVDKSGRQAGLIAKDVYEIVKENAEAIEKVINYDRDYTYDFFGFKTLERSYLLKIH 2244

Query: 311  GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
            G   E PQ   MRV++G+        + A   YNL+S   F  +TPTLFNSGT  PQ+SS
Sbjct: 2245 GKIAERPQHMLMRVSIGIH---KRDLESAFRTYNLMSEKWFTHATPTLFNSGTPKPQMSS 2301

Query: 371  CFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            CFL  +  D + GI+  L+++A+++K +GG+G     +R   ++I GTNG S G++P L+
Sbjct: 2302 CFLLQMKGDSIEGIYDTLKQSALISKSAGGIGISVHNIRARDSYIRGTNGISNGLVPMLR 2361

Query: 430  VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            V NDTA  V+QGG KRKG+   YLE WH D+ EFL L+KN G + +R  D+  A WIPDL
Sbjct: 2362 VFNDTARYVDQGGGKRKGSFAIYLEPWHSDIFEFLQLKKNHGKEEQRARDLFYALWIPDL 2421

Query: 489  FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
            FMKRV  +  WTL  P+E   L D++G EFE  Y  YE      E K  + I+A  LW+ 
Sbjct: 2422 FMKRVISDGTWTLMCPNECPGLPDVWGDEFEALYTKYEN-----EGKGRKTINARELWQD 2476

Query: 549  MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
            ++    ETG P++ +KD CN +S QQ++G + SSNLCTEI   +S +E AVCNL SI+L+
Sbjct: 2477 IVDSQIETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPDEVAVCNLASISLV 2536

Query: 609  AHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                 N ++DY KL    +     L+ VID N + + +AK SN  HR IG+G+ G   A 
Sbjct: 2537 KFVKENGEYDYQKLYEISKVVTFNLNKVIDENYYPVIEAKNSNMRHRPIGIGVQGLADAF 2596

Query: 668  HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
              + I + S EA  + ++  E I F A  AS+E+A + G Y +FKGS   +G    D   
Sbjct: 2597 IKMRISFESDEAQIVNEKIFETIYFGACEASMEIAIKEGPYETFKGSPASKGQLQFDLWN 2656

Query: 728  LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                +             WD LK+++   GMRNS  ++  PTA+ + I G  +S +P   
Sbjct: 2657 YKPHLCGY---------DWDGLKQKIVEHGMRNSLLISPMPTASTSQILGNCESFEPYTS 2707

Query: 788  NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            NLY +  ++G+F  +N  LV +L +R+LW+ ++ + L   +GS+  +  IPDD+K+++ T
Sbjct: 2708 NLYTRRVLAGEFVCINPHLVQDLIERNLWNPSIKNQLLAFNGSVSQVPDIPDDIKQLYKT 2767

Query: 848  AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
             +E+    +I  A  R  +IDQ+QSLN+++ +PS  K+  ++  AW  GLKT  YYLRSR
Sbjct: 2768 VWEVSQKAIINLAVGRSPFIDQSQSLNIHISDPSYSKITSMHFYAWEKGLKTGMYYLRSR 2827

Query: 907  SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             A    K TL        A  +   N +            + E
Sbjct: 2828 PAADPIKFTLDVESLLREAGSINVQNINGKRKQDDLQELENPE 2870


>gi|269105082|ref|ZP_06157777.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160717|gb|EEZ39215.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 729

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 276/788 (35%), Positives = 430/788 (54%), Gaps = 65/788 (8%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
              GL+ V    V       +YDG+  ++++  L  ++ +L  + P+YAK+ AR ++  L
Sbjct: 2   LADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSL 60

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
           ++E         + +    +   Y ++  +                  +   L + + Y+
Sbjct: 61  QKETSGYATATRELSEIGILSSAYVDFVAK------------------NQFALEDMIDYK 102

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD+ F+Y G + L   Y L + G  +E PQ  FMRVA+ +A  +    +   E Y+LLS 
Sbjct: 103 RDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDD---LEEIRELYDLLSL 159

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            ++  +TPTLFN+G +  QLSSCFL  +  D + GI+  L++ A+++K +GG+G     +
Sbjct: 160 CYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNI 219

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  GA I GTNG S G++P LKV N+TA  V+QGG KRKG+   YLE WH D+E FLDLR
Sbjct: 220 RATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLR 279

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A W+PDLFM+RV  +A WTLFSP     L DLYG EF   Y+ YE
Sbjct: 280 KNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYE 339

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R          + I A  L  +++    ETG P++ +KD CN +S Q+++G + SSNLC 
Sbjct: 340 RMGL-----GVKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCA 394

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           EI   S+ +ETA CNL S+ L     N  FD+DKL    + A++ LD VID+N H  +K 
Sbjct: 395 EIMEVSTPDETAACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKI 454

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +KSNH HR +GLG+ G       +H+P+ S EA+ +  +  E +   ++ AS E+A+++G
Sbjct: 455 EKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKG 514

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            YSS+ GS    G F  D                +SR  W +LK ++   G+RNS  +A 
Sbjct: 515 TYSSYDGSPISHGQFQFDLWCEQP----------SSRWDWSQLKHQIAEHGVRNSLLIAQ 564

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G +++ +    N+Y +  +SG+F ++N +LV++L+QR LW   +   +  
Sbjct: 565 MPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIIL 624

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           ++GS+  I+ IPDDL+ ++ T +EI    +I+ ++ R  ++ Q+QSLNL+L  P+  +++
Sbjct: 625 NNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQIN 684

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            ++  AW  GLKT  YYLRS+ +T+  K T+                            +
Sbjct: 685 AMHFYAWKRGLKTGMYYLRSKPSTNAVKVTVGQQ-------------------------S 719

Query: 946 SDTECEVC 953
            D +C  C
Sbjct: 720 EDEDCLNC 727


>gi|299472902|emb|CBN80471.1| EsV-1-180 [Ectocarpus siliculosus]
          Length = 766

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/794 (32%), Positives = 412/794 (51%), Gaps = 41/794 (5%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
             + I   DG   +    ++   +++ C GL    V    +  +    +Y G++ ++L+T
Sbjct: 2   ESMYITKRDGRKENVLFDKISARIKKLCYGLDSRYVDHVAIAQKVISGVYAGVTTTELDT 61

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++  +    P+Y+ +  R  +  L +E   +  +       + M           +
Sbjct: 62  LAAETAAYMAISHPDYSLLAGRIAVSSLHKETKESFVETMADLHDYGM-----------V 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
            + V A +        +   L   + Y +D  +++   + L   Y L I+G+ +E  Q  
Sbjct: 111 ADDVHAAI------QDNAHLLDGAIDYGKDLEYDFFAFKTLEKSYLLKIDGNIVERIQHM 164

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            MRVA+G+     +  +  ++ Y  LS      +TPTLFN+GT + QLSSCFL  + DD 
Sbjct: 165 LMRVAVGIH---KDDIESVLDTYTELSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDS 221

Query: 381 -YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
             GI+  L++ A ++K++GG+G   + +R  G++I GTNG S G++P L+    TA  +N
Sbjct: 222 VDGIYDTLKQTAKISKFAGGIGLSVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFIN 281

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKG+   YLE WH D+ EFLDL+KN G++  R  D+    W+ DLFM RV  +  W
Sbjct: 282 QAGRRKGSFAMYLEMWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMHRVKADGDW 341

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL SP +  DL DL+G +F+ AYE YE         + + I A  L+ K++    ETG P
Sbjct: 342 TLLSPSDAPDLIDLHGADFDRAYEKYESDG------IGKTIKARTLFAKVVESQIETGGP 395

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618
           +  FKD CN +S QQH+G + SSNLC E+   SS EE AVCNL SINL+ H   ++ FD+
Sbjct: 396 YYLFKDSCNAKSNQQHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVKPDKTFDF 455

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L  T + A++ L+ VID N + +E+   SN  HR  GLG+        ++  P+ S E
Sbjct: 456 ERLHKTAKQAIKNLNKVIDANFYPLEECSLSNMKHRPCGLGVQALHDVFMVMGFPFESEE 515

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I   ++ AS+E A+  G Y SF+GS    G    D  G   +       
Sbjct: 516 AATLNKQIFETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWGHEVDD------ 569

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-ANICGVSQSIDPSYQNLYVKSNMSG 797
              SR  W +++  +KT GMRNS   A+ PTA+  +   G +++ + S   LY +  +SG
Sbjct: 570 ---SRHDWTKIRGDLKTYGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSG 626

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN +L+ EL +  LWD  M + +    GS+  IE IP+  + +    +E+    +I
Sbjct: 627 EFPIVNKYLIRELIKLGLWDGEMKNAIIRGGGSVQGIESIPEKTRMLFKNVWEVSQKAVI 686

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           E A+ R  +IDQ+QS+N++ + P+  K+       W +GLKT +YY+RSR      + T+
Sbjct: 687 EQAAARGPYIDQSQSMNIFFERPTVAKISSALFYGWKLGLKTASYYVRSRPVADPVQFTV 746

Query: 917 KGVDGKLNAVPVTD 930
              +   +     +
Sbjct: 747 SPEEPVGDEEDDKE 760


>gi|171399|gb|AAA34569.1| ribonucleotide reductase DNA damage-inducible regulatory subunit
           [Saccharomyces cerevisiae]
          Length = 756

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 253/785 (32%), Positives = 402/785 (51%), Gaps = 40/785 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +     GL    + +  V       +Y G++  +L+   
Sbjct: 1   MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+YA + AR  +  L ++      K         ++ L+        + 
Sbjct: 61  AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGKH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    +++  +  YL + + Y+RDF + Y G + L   Y L +NG   E PQ   M
Sbjct: 113 APMISDEIYNIV-METRYLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   + E     ++ YNL+S  +F  ++PTLFN+GT  PQ+SSCFL  + DD + 
Sbjct: 172 RVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPLPQMSSCFLIAMKDDSIE 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+E AM++K +G L      +R  G++I GTNG S G+IP ++V N+TA  V + 
Sbjct: 229 GIYDTLKECAMISKTAGVLS-HINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVTRV 287

Query: 442 GKRKGAVCAYLETWHIDVEEF-LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             R   +  +  +  + +     D+RK  G +  R  D+  A WIPDLFMKRV ++  WT
Sbjct: 288 VTRDLVLSPFSWSHGMQISSTKFDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 347

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP     L D++G EFE  Y  YER+         + I A  LW  +L    ETG P+
Sbjct: 348 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614
           + +KD CN ++ QQ++G + SSNLC EI   SS +ETAVCNL SI L A           
Sbjct: 402 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 461

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +++++L    +     L+ VID N + + +A+ SN  HR I LG+ G      +L +P+
Sbjct: 462 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 521

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I    + AS ELAQ+ G YS+F+GS   +G+   D          
Sbjct: 522 ESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 577

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                      W+ L+K +   G+RNS  MA  PTA+ + I G ++  +P   N+Y +  
Sbjct: 578 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 631

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN +L+ +L    +WD++M   L   +GSI  +  +P +LK+++ T +EI   
Sbjct: 632 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 691

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +I  A+ R  +IDQ+ SLNL+L  PS  K+  ++   W  GLKT  YYLR+++A++  +
Sbjct: 692 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 751

Query: 914 STLKG 918
            T+  
Sbjct: 752 FTIDP 756


>gi|1710392|sp|P50647|RIR1_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|349792|gb|AAA29755.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 804

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 278/831 (33%), Positives = 427/831 (51%), Gaps = 51/831 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G     +  ++   ++    GL  +      V       MY  +   +L+   
Sbjct: 1   MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+++ + AR   + L +     V +  +    ++     P      I +
Sbjct: 61  AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDGRGRP---ASLISK 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   +L   +       L  ++ Y   F ++Y G + L   Y L IN   IE PQ   M
Sbjct: 118 EVYDFILLHKV------RLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RV++G+ + + +K   A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D + 
Sbjct: 172 RVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIE 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L++ A+++K +GG+G     +RG  ++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 229 GIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKG+   Y+E WH D+ EFLDLRKN G +  R  D+  A W+PDLFMKRV +N  WT
Sbjct: 289 GGKRKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L + +G+EFE  Y  YE +         + + A  LW  +L    ETG P 
Sbjct: 349 LMCPNECPGLSETWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAILQSQIETGVPI 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618
             +KD CN +  + ++G +  SNLC EI   +S +E AVCNL SI L         +F++
Sbjct: 404 YLYKDSCNAKPIK-NLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNF 462

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL    +   R LD +I+ N + +++AK SN  HR IG+G+ G      LL   Y S  
Sbjct: 463 KKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYESDA 522

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A E+     E + + A+  SV+  Q  G Y S++GS   QG+   D      + +     
Sbjct: 523 AKELNKRIYETMYYAALEMSVDWLQ-SGPYESYQGSPGSQGILQFDMWNAKVDNK----- 576

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  WDELK ++   G+RN   +A  PTA+ + I G ++S +P   N+Y +  +SG+
Sbjct: 577 ----YWDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGE 632

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+ +L  R LWDE M   L  H+GSI  I  IPDDLK+++ T +EI    +I+
Sbjct: 633 FFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIID 692

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+Y+ +P+  KL  ++   W  GLKT  YYLR+++AT   K T+ 
Sbjct: 693 MAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVD 752

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTSDTECEVC 953
               K NAV + + +    +  +                    +D +C +C
Sbjct: 753 THVAK-NAVKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQCLMC 802


>gi|197322445|ref|YP_002154718.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
 gi|197130512|gb|ACH46848.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
          Length = 773

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/794 (32%), Positives = 411/794 (51%), Gaps = 38/794 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++       +    ++   V + C GL    V    V     + +Y G++  +L+   
Sbjct: 1   MYVIKRSQRRENVMFDKITTRVRKLCEGLDSDFVDPVEVTMRVNQGIYAGVTTVELDLLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+Y+ + AR  L  L +E  +      QK                  + 
Sbjct: 61  AETCAFMSTNHPDYSILAARICLSNLYKETESCYKTLVQKMR--------EYVNPETSQH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                    S++  +   +   L    +  ++Y   + L   Y L ++G   E P    M
Sbjct: 113 APLVSEELASVVANNSKVIQEALDEVLE-NYDYFAFKTLEKSYLLKMDGRVSERPHQLLM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+G+   +       +  +  +    +  +TPTLFN+GT  PQ+SSCFL T   D + 
Sbjct: 172 RVAIGIHGHDMPNV---LRAFRDMRDKRYTMATPTLFNAGTPVPQMSSCFLMTNKADSIS 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF +L++ A ++KY+GG+G     VR  G++I GTNG S G++P L+V N+ A  V+QG
Sbjct: 229 GIFDSLKDCATISKYAGGIGISVHDVRARGSYIRGTNGTSNGLVPMLRVFNNAARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG+   YLE WH DV+ F+DLRKN G+D  R  D+  A W+PDLFMKRV +N+ W+
Sbjct: 289 GGRRKGSFAVYLEPWHADVQAFIDLRKNHGNDLERARDLFYALWVPDLFMKRVEKNSAWS 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+ G  FE  Y  YE Q      K  + + A  LW +++ +  ETG P+
Sbjct: 349 LFCPNECPGLSDVCGSRFEDLYARYESQ-----GKARKVMDARKLWDQIVDVQVETGTPY 403

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           I FKD  N +S QQH+GV+ SSNLCTEI   +S +E AVCNLGSINL     +       
Sbjct: 404 ILFKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLGSINLSTFVRDAYTSTAS 463

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD ++L +     V  L+ VID N + + +A+ SN  HR IG+G+ GF  AL ++ +PY 
Sbjct: 464 FDLEELVNFAGRMVLNLNRVIDKNFYPVPEAENSNLKHRPIGIGVQGFADALVMMRLPYD 523

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           S +A  +     E I + A+  SV LA+  G  + SF+GS  +QG+F  D  G       
Sbjct: 524 SVDAAGLNLNIFESIYYGAMKQSVHLARSDGGPHESFRGSPLEQGIFQFDLWG------- 576

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +  +    W+ L+  V   G++N+  +A  PTA+ A I G ++S +P   N+Y +  
Sbjct: 577 ---VKPSGLYDWEALRADVIKHGVKNALLVAPMPTASTAQILGNNESFEPFTSNVYNRRV 633

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           ++G+F V+N  L+ +L    +W + + + L   +GS+ NI +IP+D+K ++ T +EI   
Sbjct: 634 LAGEFPVINKHLLRDLTSLGVWGDKVKNQLLRANGSVQNIPQIPEDIKALYKTVWEIPQR 693

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +I Q+QS+N+++ EPS  K+  +    W  GLKT  YYLR+R      +
Sbjct: 694 VILDHAAARGPFICQSQSMNIHMAEPSRGKITSMLFYGWRKGLKTGMYYLRTRPKADSIQ 753

Query: 914 STLKGVDGKLNAVP 927
             L+          
Sbjct: 754 FALEKSVKNHEEDT 767


>gi|38683667|gb|AAR26844.1| FirrV-1-A20 [Feldmannia irregularis virus a]
          Length = 766

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/785 (34%), Positives = 413/785 (52%), Gaps = 36/785 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++   G   +    ++   V +   GL    V    V  +  + +Y G++  +L+   
Sbjct: 1   MYVIKRSGLRENIKFDKVTARVRKLTDGLDLKYVDPIEVTMKVNQGIYSGVTTRELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   +    P+Y+ + AR  +  L +E  +      ++                  E 
Sbjct: 61  AETCAYMSINHPDYSVLAARICVSNLYKETESCYSTLVKQLR--------DYVNPETGEW 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   +   L    +  ++Y   + L   Y L +NG   E P    M
Sbjct: 113 APLVSAELVKVVTENREQVQEALDGFAE-TYDYFAYKTLEKSYLLKMNGKIAERPHQLLM 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+   +      A++ Y  + S  +  +TPTLFN+GT  PQ+SSCFL T  DD + 
Sbjct: 172 RVAIGIHGDD---ITSALQTYRDMGSKRYTMATPTLFNAGTPTPQMSSCFLMTCKDDSIS 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L+  A ++KY+GGLG     VRG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 229 GIFDTLKNCACISKYAGGLGVSIHDVRGRGSYIRGTNGVSNGLVPMLRVFNNTARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G +RKG++  YLE WH D+E FLDL+KN G++  R  D+  A W+PDLFM+RV +N  W+
Sbjct: 289 GGRRKGSIAIYLEPWHADIESFLDLKKNQGNELERARDLFYALWVPDLFMRRVEKNQKWS 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++GKEF+  YE YE        KV   + A  LW  +L +  ETG P+
Sbjct: 349 LMCPNECPGLANVWGKEFDALYEKYEA----SPNKVRATLDARKLWNHILDVQVETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616
           I +KD  N +S QQH+GV+ SSNLCTEI   +S +E AVCNL SINL +   +       
Sbjct: 405 ILYKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLASINLSSVIRHPYTAEAY 464

Query: 617 -DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            DY  L     + VR L+ VID N + + +A+ SN  HR +G+G+ GF  AL +L  PY 
Sbjct: 465 VDYTALVGLAGSLVRNLNRVIDKNYYPVPEARASNMKHRPVGIGVQGFADALIMLRKPYD 524

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SPEA  I     E I + A+ AS++ AQ  G + SF GS   QG F  D  G        
Sbjct: 525 SPEAAAINVNLFESIYYGALKASLQEAQLYGRHESFPGSPLSQGRFQFDLWG-------- 576

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +  T    W+ L+  +   G+RNS   A  PTA+ A I G ++S +P   N+Y +  +
Sbjct: 577 --VQPTDTYDWNTLRASIVEHGVRNSLLCAPMPTASTAQILGNNESFEPFTTNVYNRRVL 634

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G+F VVN  L+ +L   DLWD+ M + L  H+GS+ NI RIP  +K ++ T +EI    
Sbjct: 635 AGEFPVVNKHLLKDLTSLDLWDDEMKNQLLLHNGSVQNIARIPRWVKDLYKTVWEIPQRV 694

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +++ A+ R  ++ Q+QS+N+++ EP+  KL  +    W  GLKT  YYLR+R      + 
Sbjct: 695 ILDHAADRGPYVCQSQSMNIHMAEPTRAKLTSMLFHGWKRGLKTGMYYLRTRPRADSIQF 754

Query: 915 TLKGV 919
            + G 
Sbjct: 755 GVDGA 759


>gi|168702495|ref|ZP_02734772.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 797

 Score =  633 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 315/815 (38%), Positives = 453/815 (55%), Gaps = 49/815 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G L   N  ++   V+    GL  V    V  +T   +YDG + ++L+   I 
Sbjct: 27  MQVRKRSGALEDVNVNKIVRAVQRCSGGLPGVDPMRVAVKTIGGLYDGATTAELDRLSIQ 86

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++  LI +EP Y+++ AR L   + +EV          +    +   Y            
Sbjct: 87  TAAGLISEEPEYSRLAARLLATYVDKEVANQDV----HSFSQSIAAGYRHGLVAGG---- 138

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322
                  + +  +   L           FEY GL+ +YDRY L    +R  IE P  FF+
Sbjct: 139 -----TMAFVAANARKLNAAAAEPAPDLFEYFGLRTVYDRYLLRHPDTRHVIETPAFFFL 193

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA GLA    +    A+E Y L+S+  ++ STPTLFNSGT  PQ+SSC+L   P D L 
Sbjct: 194 RVACGLAESAAD----AIELYRLMSAHRYLPSTPTLFNSGTARPQMSSCYLLDSPADALE 249

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I+    + A L+K++GG+G  +  +R  G+ I GTNG S G++P+LK  + +  AVNQG
Sbjct: 250 AIYDRYADVAKLSKFAGGIGLAYHRIRSRGSLIRGTNGHSNGIVPWLKTLDSSVAAVNQG 309

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA C YLETWH DVEEFL+LR NTGD  RRT+++N ANW+PDLFM+RV     W+L
Sbjct: 310 GKRKGACCVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLFMRRVEAGEPWSL 369

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P  V  L DL+G  F+ AY + E      +    + + A  L+ +M+  L ETG+ W+
Sbjct: 370 FDPKAVPHLTDLFGAAFDAAYTDAEA-----KGLAVKSVPARDLYARMMKTLAETGNGWM 424

Query: 562 TFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           TFKD CN    Q      VVHSSNLCTEI   +S+ ETAVCNLGS+NL  H   + FD+ 
Sbjct: 425 TFKDACNRACNQTAEPGAVVHSSNLCTEIVEVTSAGETAVCNLGSVNLARHVTRDGFDFA 484

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            LA T+RTAVR LD V+D+N +   +A  SN   R +GLG+MG Q     L +P+ +P A
Sbjct: 485 ALAETVRTAVRFLDRVVDVNFYPTPEAAASNARWRPVGLGVMGLQDVFFKLKLPFDAPAA 544

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E++    E I +HA++ S ELA  RG + SF  +    GV   D  G+           
Sbjct: 545 RELSRRIQEEIYYHALATSCELAAARGPHPSFASTRAAAGVLQFDLWGVEPTDPAR---- 600

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                 W  L++RV+T G+RNS  +AIAPTATIA+I G  + ++P   NL+ +  +SG+F
Sbjct: 601 ------WAALRERVRTTGLRNSLLVAIAPTATIASIVGAYECVEPQVSNLFKRETLSGEF 654

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN +LV++LK   LW +A+ + +K  DGS+ ++  +P  L+ ++ TA+E+    LI+ 
Sbjct: 655 LQVNRYLVDDLKALGLWTDAVRTKIKLADGSVQSLSELPAGLRAVYRTAWEVPQRGLIDM 714

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           A+ R  +IDQ+QSLNL+L+ P+  K+  +Y  AW  GLKTTYYLRSR AT++ K+T+   
Sbjct: 715 AAERGPFIDQSQSLNLFLESPTIGKMSSMYMHAWKKGLKTTYYLRSRPATAIAKTTVTPT 774

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +   +  +  S  +   CE CQ
Sbjct: 775 ------------AAPADTSAVSCSLENPGACEACQ 797


>gi|314924365|gb|EFS88196.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL001PA1]
          Length = 856

 Score =  633 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 315/856 (36%), Positives = 475/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +      +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNARDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|313813766|gb|EFS51480.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL025PA1]
          Length = 856

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 314/856 (36%), Positives = 475/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL  H    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLATHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|50843559|ref|YP_056786.1| ribonucleotide-diphosphate reductase subunit alpha
           [Propionibacterium acnes KPA171202]
 gi|282854886|ref|ZP_06264220.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J139]
 gi|50841161|gb|AAT83828.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium
           acnes KPA171202]
 gi|282582032|gb|EFB87415.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J139]
 gi|314965891|gb|EFT09990.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL082PA2]
 gi|314981612|gb|EFT25705.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA3]
 gi|315092252|gb|EFT64228.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA4]
 gi|315104691|gb|EFT76667.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA2]
 gi|315107753|gb|EFT79729.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL030PA1]
 gi|327328670|gb|EGE70430.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL103PA1]
          Length = 856

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 315/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|88856485|ref|ZP_01131143.1| ribonucleotide-diphosphate reductase alpha subunit [marine
           actinobacterium PHSC20C1]
 gi|88814352|gb|EAR24216.1| ribonucleotide-diphosphate reductase alpha subunit [marine
           actinobacterium PHSC20C1]
          Length = 813

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 309/785 (39%), Positives = 463/785 (58%), Gaps = 14/785 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201
            + ++  +GT   +++ ++ + +E+A +GL D       + SE    ++DG++   L+ A
Sbjct: 2   AITVVKRNGTREPYDANKINLAIEDAATGLDDNITWVTQIASELELTLFDGITTQQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +I  +   ++ +P +  V AR LL+ + + VL             +++ L+ E+F   + 
Sbjct: 62  VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYTDA------ADLKKLHKEHFGPNVI 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
            GV+  LL   + + FDL  LA  L+   D   +Y+G+  L +RY +   NG  +E+PQ 
Sbjct: 116 RGVEEGLLDPRLTEMFDLDALAEHLEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MR+AMGL+L E    + A++FY  +SS  ++ +  TL N+GT +PQL++CF+  + DD
Sbjct: 176 FWMRIAMGLSLNEANPNEAALKFYEKMSSLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I    ++   L K +GG+G   T +R  G+ I   N  S G IPF+   +    AV+
Sbjct: 236 MEHIAKTTRDVMWLTKGTGGIGLSVTKLRAQGSPIRSNNTTSTGPIPFMHTIDSILRAVS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  EFL+LR N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHMDFPEFLELRSNSGDPYRRTRTANTAVWISDEFMKRVQNDDSW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P EV+DL++LYGK F   Y  Y   AD GE+ +F+KI A   ++ +L  L  + HP
Sbjct: 356 YLFDPLEVTDLNELYGKAFSKRYNEYVAMADAGEMHMFKKIGAREQFKSILISLQTSSHP 415

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDY 618
           W+T+KD  N R+   + G +H SNLCTEITL    +  +VCNL SINL  H       D+
Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSRHLLPEGGVDF 475

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            K+  + R AVR LDN+IDI   ++++A  SN  +RA+GLG+MGF   +  L   Y S E
Sbjct: 476 AKIEESARLAVRQLDNLIDITRSSVKEADFSNEQNRAVGLGVMGFTDIIEKLGFSYESEE 535

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELA 737
           A ++ DE ME +S+ AI AS ELA+ERGAY++F+GS W +G+ P+DSI L  E R  E+ 
Sbjct: 536 AYDLIDEIMEHVSYAAIDASTELAKERGAYTNFEGSRWSEGLVPLDSIALTEEDRGMEIK 595

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +NR +RL WD ++++V   GMRN+  MAIAPTA+I  + G +  +DP +  ++ +S  +G
Sbjct: 596 VNRKTRLDWDAMREKV-KGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSNG 654

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  VN  LV  L+Q  LW E     +    G I N+E IPDD+K +  T+F++ P   +
Sbjct: 655 KFLEVNRNLVETLQQHGLW-EKNREAILRSQGDIQNVEGIPDDIKAVFKTSFQLSPYAFL 713

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           E A+R QKWIDQA S N+YL+      +  IY  AW  G+KTTYYL  +     E+ST+K
Sbjct: 714 EVAARAQKWIDQAISRNMYLETRDLGDMMDIYFDAWSRGVKTTYYLHMKPRHQAEQSTVK 773

Query: 918 GVDGK 922
               +
Sbjct: 774 VNKSE 778



 Score = 41.0 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53
          V+KRNG    +D +KI+ AI  A
Sbjct: 5  VVKRNGTREPYDANKINLAIEDA 27


>gi|289426031|ref|ZP_06427778.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK187]
 gi|289153574|gb|EFD02288.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK187]
 gi|313763765|gb|EFS35129.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL013PA1]
 gi|313793688|gb|EFS41719.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA1]
 gi|313802999|gb|EFS44207.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL110PA2]
 gi|313816917|gb|EFS54631.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL059PA1]
 gi|313829719|gb|EFS67433.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL063PA2]
 gi|313839373|gb|EFS77087.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL086PA1]
 gi|314916475|gb|EFS80306.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA4]
 gi|314918861|gb|EFS82692.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA1]
 gi|314921070|gb|EFS84901.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL050PA3]
 gi|314932315|gb|EFS96146.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL067PA1]
 gi|314956589|gb|EFT00841.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL027PA1]
 gi|314959471|gb|EFT03573.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA1]
 gi|314964863|gb|EFT08963.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL082PA1]
 gi|314968631|gb|EFT12729.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA1]
 gi|315079175|gb|EFT51178.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL053PA2]
 gi|315100240|gb|EFT72216.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL059PA2]
 gi|315102564|gb|EFT74540.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL046PA1]
 gi|315109518|gb|EFT81494.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL030PA2]
 gi|327455889|gb|EGF02544.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA3]
 gi|327456019|gb|EGF02674.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL092PA1]
 gi|327458041|gb|EGF04696.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL083PA2]
 gi|328757203|gb|EGF70819.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA1]
 gi|328757584|gb|EGF71200.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL025PA2]
          Length = 856

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 314/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL ++ G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTEITGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|91080435|ref|XP_968743.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005755|gb|EFA02203.1| hypothetical protein TcasGA2_TC007860 [Tribolium castaneum]
          Length = 798

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 248/816 (30%), Positives = 407/816 (49%), Gaps = 34/816 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG     +  ++   +++ C  L    V    +  +    +Y G++  +L+T   
Sbjct: 7   YVLKRDGRKEEVHFDKITSRIQKLCYRLNMDIVDPVSITLKVIGGLYPGVTTVELDTLAA 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  +    P+YA + AR  +  L+++                +  LY     +  E+ 
Sbjct: 67  ETAIVMGADHPDYATLAARIAVSNLQKQTKKHFSDV--------ISDLYHAVDPQTGEKT 118

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                 H  ++  +   L + + Y+RDF++ Y   ++L   Y   ING  +E PQ   MR
Sbjct: 119 PLISDQHYEIIMKNASRLNSCIVYDRDFSYNYFAFKLLERSYLFKINGKTVERPQHMLMR 178

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-YG 382
           VA+G+     E    A+E YN +S  +F+ S+ TL  +GT +P L S +   +PDD   G
Sbjct: 179 VAVGIHG---EDIDSAIETYNYMSEGYFIHSSATLLTAGTPYPYLPSTYSIAMPDDSLEG 235

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+  +     ++  +G +      +R  G  I GTNG S G++P L+V N++A    Q  
Sbjct: 236 IYECISNCIKISNTTGRISVHIQNIRAKGTEIAGTNGVSNGLVPMLRVFNNSAWLNRQSE 295

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            +      +LE WH D+ +FL+L++ TG D  R  D+  A W+PDLFM RV  +  W+L 
Sbjct: 296 NQPSNQAIFLEPWHADILDFLNLKRTTGKDEYRARDLQYALWVPDLFMHRVKNDEKWSLM 355

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +   L + +G+EFE  YE YE      E +  ++I A  +WR +     ETG P+I 
Sbjct: 356 CPHQAQGLPNCWGQEFEKLYEKYE-----SEGRFVKQIPARDVWRAICVSQMETGSPYIL 410

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDK 620
           +KD CN +S QQ++G + SS+L TE    SSS+E A C   S+  N+  +   N +D++K
Sbjct: 411 YKDACNKKSNQQNLGTIKSSSLSTESIQYSSSDEIAACITASVALNMFVNPERNGYDFEK 470

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L   ++T  + L+  ID++ +   +A+ SN  HR IG+G+ G      LL +P+ SPEA 
Sbjct: 471 LKQVVKTLTKNLNKAIDVSAYPSPEARTSNLRHRPIGIGVQGLADTFILLRMPFESPEAR 530

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
            +  +  E + + A+ AS E+A+  G YS++ GS   QG    D  G+            
Sbjct: 531 SLNVQIFETLYYAALEASSEIAERDGPYSTYDGSPLSQGRLQYDMWGVEP---------- 580

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T    W  LK+R+   G+RNS  +A+ PT + A I G +QSI+P   N+ V+   S +F 
Sbjct: 581 TKLWDWVALKQRIAKHGVRNSLLVALIPTISTAQILGNNQSIEPYLSNVQVRRVNSSEFR 640

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            VN  L+ +L +R LW   +  ++   +GS+ NI  IPDDLK I+ T +EI    +IE A
Sbjct: 641 DVNQHLLKDLTERGLWTSDLKQEVIERNGSVQNIAGIPDDLKCIYKTVWEIPQKIVIEMA 700

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R  +IDQ+Q++N+++  PS   +  ++   W  GLKT  Y LR+   + V+      V
Sbjct: 701 ADRGAFIDQSQAMNVHIGAPSYAVMSSMHFYGWQKGLKTGMYNLRTNPVSVVQNGNRSKV 760

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCT--SDTECEVC 953
                    +D    +        C+  +   CE+C
Sbjct: 761 SVVQENGEKSDDMKKSPEEDAALQCSLQNPGACEMC 796


>gi|13242650|ref|NP_077665.1| EsV-1-180 [Ectocarpus siliculosus virus 1]
 gi|13177450|gb|AAK14594.1|AF204951_179 EsV-1-180 [Ectocarpus siliculosus virus 1]
          Length = 765

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 250/793 (31%), Positives = 407/793 (51%), Gaps = 41/793 (5%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
             + I   DG   +    ++   +++ C GL+   V    +  +    +Y G++ ++L+T
Sbjct: 2   ESMYITKRDGRKENVLFDKISARIKKLCYGLEPNFVDHVAIAQKVISGVYTGVTTTELDT 61

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++  +    P+Y+ +  R  + +L +E   +  +       + M            
Sbjct: 62  LAAETAAYMAIAHPDYSLLAGRIAVSRLHKETKESFVETMADLHAYGMVA---------- 111

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
                      +++  +   L   + Y +D  +++   + L   Y L I+G  +E  Q  
Sbjct: 112 -------DDVHTVIQDNAHLLDGAIDYGKDLEYDFFAFKTLEKSYLLKIDGKIVERIQHM 164

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            MRVA+G+     +  +  +E Y  +S      +TPTLFN+GT + QLSSCFL  + DD 
Sbjct: 165 LMRVAVGIH---KDDIESVLETYTGMSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDS 221

Query: 381 -YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
             GI+  L++ A ++K++GG+G   + +R  G++I GTNG S G++P L+    TA  +N
Sbjct: 222 VDGIYDTLKQTAKISKFAGGIGLSVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFIN 281

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G+RKG+   YLE WH D+ EFLDL+KN G++  R  D+    W+ DLFM+RV  +  W
Sbjct: 282 QAGRRKGSFAMYLEVWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMRRVKADGDW 341

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TL SP +  DL DL+G +F+ AY+ YE         + + I A  L+ K++    ETG P
Sbjct: 342 TLLSPSDAPDLIDLHGADFDQAYKKYESNG------IGKTIKARTLFAKVVESQIETGGP 395

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618
           +  FKD CN +S Q+H+G + SSNLC E+   SS EE AVCNL SINL+ H   +  FD+
Sbjct: 396 YYLFKDACNAKSNQRHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVRADRTFDF 455

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L  T + A++ L+ VID+N + +E+ + SN  HR  GLG+        ++  P+ S E
Sbjct: 456 ERLHRTAKQAIKNLNKVIDVNFYPLEECRLSNMKHRPCGLGVQALHDVYMVMGFPFESEE 515

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I   ++ AS+E A+  G Y SF+GS    G    D  G   +       
Sbjct: 516 AATLNKQIFETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWGHEVDD------ 569

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-ANICGVSQSIDPSYQNLYVKSNMSG 797
              SR  W + K  ++  GMRNS   A+ PTA+  +   G +++ + S   LY +  +SG
Sbjct: 570 ---SRHDWTKTKADLQKYGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSG 626

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F +VN +L+ EL    LWD  M + +    GS+  IE IP+  + +    +E+    +I
Sbjct: 627 EFPIVNKYLIKELINLGLWDGEMKNAIIRGGGSVQGIESIPEKTRTLFKNVWEVSQKAII 686

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           E A+ R  +IDQ+QS+N++ + P+  K+       W +GLKT +YY+RSR      + T+
Sbjct: 687 EQAAARGPYIDQSQSMNIFFERPTMAKISSALYYGWELGLKTASYYVRSRPVADPVQFTV 746

Query: 917 KGVDGKLNAVPVT 929
                        
Sbjct: 747 SSEKSVNEEDAKE 759


>gi|315094825|gb|EFT66801.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL060PA1]
          Length = 856

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 316/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     ++I   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRIRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|28493650|ref|NP_787811.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
           whipplei str. Twist]
 gi|28572843|ref|NP_789623.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma
           whipplei TW08/27]
 gi|28410976|emb|CAD67361.1| ribonucleotide-diphosphate reductase large chain [Tropheryma
           whipplei TW08/27]
 gi|28476692|gb|AAO44780.1| ribonucleotide reductase alpha chain [Tropheryma whipplei str.
           Twist]
          Length = 792

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/780 (39%), Positives = 467/780 (59%), Gaps = 11/780 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L ++  DG    ++S+++   +EEA SG  D  ++ + SE    ++DG++ S L+ +LI
Sbjct: 2   SLTVVKRDGRKQQYDSRKVCAAIEEALSGSSDAITEQLSSELELTLFDGITTSQLDESLI 61

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             +   ++ +P Y +V  R LL+ + R VL             +++ L+ ++F  +IE+G
Sbjct: 62  QVALQNVKDDPVYDRVATRLLLKSIYRSVLGEYKNCC------QLRDLHVKHFRGFIEKG 115

Query: 264 VKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
           V+  +L   +   FD   L+  L  +RD  F+Y+GL  L +RY +   +G  +E+PQ  +
Sbjct: 116 VEEGILDRRLDGRFDYDRLSRALDPQRDTLFKYIGLVTLNNRYGIRARSGKNLEVPQYLW 175

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MR++MGL++ E +    A++FY  +S   ++ +  TL N+GT  PQLS+CF+  + DD+ 
Sbjct: 176 MRISMGLSVLEKDPTGSALKFYEKMSKLEYLAAGSTLVNAGTCTPQLSNCFVMEMQDDIE 235

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    ++  +L K +GG+G   T +R  G+ I   N +S G IPF+   +    AV++G
Sbjct: 236 HIAKTTRDVMLLTKGTGGIGLSVTKLRAQGSPIRSNNTRSTGPIPFMHTIDSVLRAVSRG 295

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GK+ GA+C Y+E WH+D  EF+DLR+N+GD  RRT   NTA WI D FMKRV  +  W L
Sbjct: 296 GKKFGALCFYMENWHMDFPEFIDLRQNSGDPYRRTRTANTAVWISDEFMKRVINDREWYL 355

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  DL++LYG EF   YE Y  QA+ G + +F+K+ A   +R +L  L  T HPWI
Sbjct: 356 FDPLETPDLNELYGAEFSKRYEYYVNQAEAGRLSMFKKLGAREQFRAILMSLQTTSHPWI 415

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
           TFKD  N+R+   + G +H SNLCTEI L    E  +VCNL SINL  H  + + D+  L
Sbjct: 416 TFKDTINLRALNNNTGTIHLSNLCTEICLPQDRENVSVCNLASINLSRHLIDGEIDWQLL 475

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
             + R AVR LDN+IDI C +++++  SN+ +RAIGLG+MGF + +  L   Y S +A +
Sbjct: 476 EESTRLAVRQLDNLIDITCSSVKESDNSNNLNRAIGLGIMGFTNLIERLGYSYESEQAFD 535

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNR 740
           + D  ME ISF AI  S  LA+ERG Y +F GS W +G+ PIDSI ++++ R   +++N 
Sbjct: 536 LIDRLMEQISFVAIDESCNLAEERGPYKNFHGSRWSKGMLPIDSIKIVSQNRGVPVSVNT 595

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + RL WD L+KRV   G+RN+  +AIAPTA+I  + G +  +DP +  ++ +S   G F 
Sbjct: 596 SYRLDWDSLRKRV-RNGIRNATLLAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSFGKFL 654

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            VN  LV +LK+R LW E +  D+    G+I  I+ IP ++K  + T+F++ P   ++ A
Sbjct: 655 EVNENLVLDLKRRGLW-ERVREDILRSQGNIQQIDAIPGEIKANYKTSFQLSPYAFVQVA 713

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
           +R QKW+DQA S N+YL+      +  +Y  AW MGLKTTYYL  +     E+ST+K   
Sbjct: 714 ARAQKWVDQAISRNMYLESRDISDMVSVYTTAWEMGLKTTYYLHMKPRHQAEQSTVKVNK 773


>gi|315087307|gb|EFT59283.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA3]
          Length = 856

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 314/856 (36%), Positives = 475/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RR    +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRPRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|289427883|ref|ZP_06429587.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J165]
 gi|289158766|gb|EFD06966.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes J165]
 gi|313808409|gb|EFS46876.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL087PA2]
 gi|313818170|gb|EFS55884.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL046PA2]
 gi|313821028|gb|EFS58742.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA1]
 gi|313823900|gb|EFS61614.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA2]
 gi|313827160|gb|EFS64874.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL063PA1]
 gi|314927053|gb|EFS90884.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL036PA3]
 gi|314961873|gb|EFT05974.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL002PA2]
 gi|314979602|gb|EFT23696.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL072PA2]
 gi|314988337|gb|EFT32428.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA2]
 gi|314990427|gb|EFT34518.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA3]
 gi|315082360|gb|EFT54336.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL078PA1]
 gi|315083810|gb|EFT55786.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL027PA2]
 gi|315089725|gb|EFT61701.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL072PA1]
 gi|327326612|gb|EGE68400.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL096PA3]
 gi|327449569|gb|EGE96223.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL013PA2]
 gi|332676501|gb|AEE73317.1| ribonucleoside-diphosphate reductase subunit alpha
           [Propionibacterium acnes 266]
          Length = 856

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 315/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|295131637|ref|YP_003582300.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK137]
 gi|291377353|gb|ADE01208.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes SK137]
 gi|313771781|gb|EFS37747.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL074PA1]
 gi|313810604|gb|EFS48318.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL083PA1]
 gi|313831645|gb|EFS69359.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL007PA1]
 gi|313834799|gb|EFS72513.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL056PA1]
 gi|314974995|gb|EFT19090.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL053PA1]
 gi|314977909|gb|EFT22003.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL045PA1]
 gi|314984683|gb|EFT28775.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL005PA1]
 gi|315095600|gb|EFT67576.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL038PA1]
 gi|327332876|gb|EGE74608.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL096PA2]
 gi|327447703|gb|EGE94357.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL043PA2]
 gi|327448578|gb|EGE95232.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL043PA1]
 gi|328762001|gb|EGF75507.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL099PA1]
          Length = 856

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 315/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLINGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|327335277|gb|EGE76987.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL097PA1]
          Length = 856

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 314/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            ++PM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLNPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|68490738|ref|XP_710811.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
 gi|68490761|ref|XP_710800.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432045|gb|EAK91552.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432057|gb|EAK91563.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
          Length = 816

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 270/804 (33%), Positives = 427/804 (53%), Gaps = 35/804 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI +  G    F+S ++  ++EE    L D+    ++    + +   L+  +L T +   
Sbjct: 3   KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             + +   P+YA +  R    KL  +V  +  +  ++           +Y  R       
Sbjct: 63  IASRVIYHPDYAILAGRIETRKLYLKVPYSFSENVERLR---------KYRPRKSNSYSP 113

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                  ++     +L   +   RD+   Y G++ L   Y L I+G   E+PQ  FMRVA
Sbjct: 114 ISSAFYKVVKKHGEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVA 173

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384
           +G+   +        E Y+L+S  +F+ ++PTL+N+G+    LSSCFL  + DD + GIF
Sbjct: 174 IGIHQND---INAIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIF 230

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443
             L E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+TA  V+QGG K
Sbjct: 231 KTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGK 290

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV +N+ WTLFS
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L D+YG+EFE  Y  YE +    +      +SA  LW  +L    ETG P++ +
Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEGFGTK------VSAHKLWLAILHSQTETGGPYMLY 404

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYD 619
           KD CN +S Q+++G + SSNLC EI   SS +ETAVCNL S+ L  +    +    FD++
Sbjct: 405 KDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL S  +   R L+ VID+  + +E A+ SN  HR I LG+ G       L +P+ S  A
Sbjct: 465 KLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I   A+ ASVELA + G Y +F+GS   +G+   D               
Sbjct: 525 KTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFDMWK----------HK 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    W  LK  ++  G+RNS  +A  PTA+ + I G ++  +P   NLY +  ++G++
Sbjct: 575 PSPMYDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEY 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN +L+ +L    +WD AM + +   +GSI NI  IPD++K+++ T +E+    +I+ 
Sbjct: 635 QIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTVWELSQKVIIDM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R K++DQ+QS+N++L  P+  KL   +  AW  GLKT  YYLR+++A+   + T+  
Sbjct: 695 AADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTVDA 754

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPS 942
            + +     V   +        P 
Sbjct: 755 KEAEKVGTKVPQKSLKRKKYMEPQ 778


>gi|165969145|ref|YP_001651045.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
 gi|164663641|gb|ABY65861.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
          Length = 761

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 268/784 (34%), Positives = 419/784 (53%), Gaps = 39/784 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196
           A    KL ++  DG+  +    ++   +     GL    +    +  +  K +Y G++ +
Sbjct: 3   AARENKLYVIKRDGSKQTVLLDKITSKLNRLSYGLNKQFIDPAAITIQVVKTIYAGVTTT 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+      +  +     +YA +  R +++   + V  +  +   K   H +  L     
Sbjct: 63  ELDQHAAKETANMAYIHDDYALLAGRIMVDDNHKHVPDSFVRVVAKLYKHNLVSL----- 117

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
                           +   +   L   + Y+RD+ ++Y   + L + Y   ING   E 
Sbjct: 118 ------------ALFEVASANADALEAQIDYKRDYEYKYFAYKTLENGYLKRINGRVAER 165

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q   MRVA+G+  ++      A+E YNL ++  F  ++PTLF +G   PQLSSCFL T+
Sbjct: 166 IQHMLMRVAIGIHGRD---IDAAIETYNLTANKMFTHASPTLFAAGCPQPQLSSCFLLTL 222

Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + G++  L + A ++KY GGLG +    R  G+ I GTNG + GV P L+V N+  
Sbjct: 223 KEDSIKGMYETLADCAQISKYGGGLGVNVHKARARGSAIRGTNGTASGVEPLLRVYNNCV 282

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKRKGA+  YLE WH D+ +FL+L++N G + ++  D+  A W+PDLFMKRV Q
Sbjct: 283 RHVDQGGKRKGAMAVYLEPWHADIYDFLNLKRNMGAEDKKARDLLYALWVPDLFMKRVQQ 342

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  PD    L D+Y  EFE  YE YE      E +   ++ A +L+R ++    E
Sbjct: 343 NEMWSLMCPDRCPGLSDVYSLEFEKLYEQYE-----SENRFTCQVEARSLFRTIIETQVE 397

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P+I +KD CNI+S Q+++G +  SNLC EI   SSSEE AVCNL S+ +     +  
Sbjct: 398 TGTPYILYKDACNIKSNQKNLGTIRCSNLCAEIVQYSSSEEIAVCNLASVCVNRFIKSGV 457

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+  L S  +  V+ L+ +IDIN + +E AK+SN  HR +G+G+ G   A  +L +PY 
Sbjct: 458 FDFVALKSVTKIVVKNLNKIIDINYYPLEAAKESNLKHRPVGVGIQGLADAFCILGLPYE 517

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +A  +  +  E + + A+ AS +LA+  G YSS+  S    GV   D           
Sbjct: 518 SDKAKMLNKQIAETVYYAALEASCDLAKLNGPYSSYSDSPASLGVLQYDMWN-------- 569

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +  T+   W +LK R+   G+RNS  +A  PTAT A I G ++S +P   NLYV+  +
Sbjct: 570 --VQPTNLWNWADLKLRIAKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNLYVRRVL 627

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N  LV +L + +L+D+ M + +    GS+  I+RIPDD+K ++ T +E+    
Sbjct: 628 AGDFQVINQHLVEDLCRLNLYDDHMRNSIIAAGGSVQKIDRIPDDIKAVYKTVWEMSSKN 687

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A+ R  +IDQ+QS N+++ +PS   L  ++   W  GLKT  YYLR++ A      
Sbjct: 688 LIDMAADRGAFIDQSQSFNVFIAQPSFALLTSVHMHTWKRGLKTGMYYLRTKPAADAIAF 747

Query: 915 TLKG 918
           T+  
Sbjct: 748 TVDK 751


>gi|328757394|gb|EGF71010.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL020PA1]
          Length = 856

 Score =  628 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 314/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +          +Q L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122

Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +  DFDL  LA  L   RD    ++G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL+L E +    A+  Y+ +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D+L  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G +F   Y  Y  QA+ G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + TAVCNL S++L AH    
Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVDLAAHLAGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + D+D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SP+A EI D  +EFIS+HAI  S +LA ERGAY  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T GMRN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LW E +  +L    G    IE IP  L++++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DPM  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942
           + E+ST  +    G+ N        +   + G                           +
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840

Query: 943 SCTSDT----ECEVCQ 954
           SC  D     +CE CQ
Sbjct: 841 SCPVDPQERQQCESCQ 856


>gi|241958750|ref|XP_002422094.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
 gi|223645439|emb|CAX40095.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
          Length = 816

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/839 (33%), Positives = 434/839 (51%), Gaps = 59/839 (7%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI +  G    F+S ++  ++EEA   L D+    ++    + +   L+  +L T +   
Sbjct: 3   KIKVLSGEEEEFDSVKIHKLLEEASFNLGDLDLDQLVESVQRGLPSTLTIEELYTFIAEV 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             + +   PNYA +  R    KL  +V  +  +  ++           +Y  R  +    
Sbjct: 63  IASRVIYHPNYAILAGRIETRKLYLKVPYSFSENVERLR---------KYRPRESKSYSP 113

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                  ++     +    +   RD +  Y G++ L   Y L + G   E+PQ  FMRVA
Sbjct: 114 ISSAFYKVVKKHGEFFDKVIDKTRDSSLTYFGIKTLESSYLLKMGGEVAELPQYLFMRVA 173

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIF 384
           +G+   +       VE Y+L+S  +F+ ++PTL+N+G+    LSSCFL  +  D + GIF
Sbjct: 174 IGIHQND---LNAIVETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKEDSIDGIF 230

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443
             L E A+++K SGG+G     +R  GA+I GTNG S G++P L+V N+TA  V+QGG K
Sbjct: 231 KTLNEAALISKASGGIGIHVHNIRSNGAYIAGTNGSSNGLVPMLRVYNNTARYVDQGGGK 290

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV  N+ WTLFS
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKDNSDWTLFS 350

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L D+YG+EFE  Y  YE +    +      +SA  LW  +L    ETG P++ +
Sbjct: 351 PNEALGLSDVYGEEFEKLYCKYESEGFGTK------VSAHKLWLAILQSQTETGGPYMLY 404

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYD 619
           KD CN +S Q+++G + SSNLC EI   SS EETAVCNL S+ L  +    +    FD++
Sbjct: 405 KDACNTKSNQKNIGTIKSSNLCCEIVEYSSPEETAVCNLASLALPTYLKTTEDAIAFDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL S  +   R L+ VID+  + ++ A+ SN  HR I LG+ G       L +P+ S  A
Sbjct: 465 KLHSVTKVLTRNLNKVIDVTKYPVKTAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +  +  E I   A+ ASVELA + G Y +F+GS    G+   D               
Sbjct: 525 KTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASNGILQFDMWN----------HK 574

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            +    W+ LK  ++  G+RNS  +A  PTA+ + I G ++  +P   NLY +  ++G++
Sbjct: 575 PSPMYDWNALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEY 634

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +VN +L+ +L    +WD AM + +   +GSI  I  IPD++K+++ T +E+    +I+ 
Sbjct: 635 QIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQKIPNIPDEIKQLYKTVWELSQKVIIDM 694

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           A+ R K++DQ+QS+N++L  P+  KL   +  AW  GLKT  YYLR+++A+   + T+  
Sbjct: 695 AADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTVDA 754

Query: 919 VDGKL--NAVPVTDPNSSTHSLGIPS---------------------SCTSDTECEVCQ 954
            + +   N VP        +    P                      +C  +   E CQ
Sbjct: 755 SEAEKAGNKVPQKSLKRKKYMEPQPRKKTAYSTPDSELYDIHDSTPITCNIEDS-ESCQ 812


>gi|155371048|ref|YP_001426582.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124368|gb|ABT16235.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 763

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 257/788 (32%), Positives = 412/788 (52%), Gaps = 54/788 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC--------------SGLQDVSSKIVLSETYKNM 189
           ++ ++  DG+  + +  ++   +   C              +GL +V    +++    ++
Sbjct: 6   RMNVIKRDGSSEAVSFDKIMTRIGRLCWAENAKPNHSGRVQNGL-EVDISRIVASICSSV 64

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            D ++   L+      + +++   P+Y  + AR  +  L ++   +V             
Sbjct: 65  VDNITTVQLDDLTADKAASMVTNHPDYGILAARIAVSNLHKQSSDSVVDT---------- 114

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
                    Y +           ++          +KY+RD+ F+Y G   +   Y   +
Sbjct: 115 ---------YTKMSSMLSDEFMQVVRAHEQEFQALVKYDRDYDFDYFGFSTMKRLYLTKV 165

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +G  +E PQ  ++RVA+ L  ++  K     E Y+ LS   F  ++PTLFN+G R+  L+
Sbjct: 166 DGKVVERPQHTYLRVAIALWGEDIAKV---KETYDALSKRKFTHASPTLFNAGFRNANLA 222

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  IF +L + A L+K+ GG+G   + +RG G+ I GTNG+S G++P LK
Sbjct: 223 SCFLVHVDDSLTNIFKSLGDVAQLSKFGGGIGLHLSDIRGRGSKIQGTNGESDGIVPMLK 282

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++ +R  ++  A W+ DLF
Sbjct: 283 VYDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLF 342

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  +  W+LF P E   L D +GKE+E  Y  YE      E +  + + A  +W  M
Sbjct: 343 MKRVEADVAWSLFDPKECPGLTDAFGKEYEDLYLRYE-----SEGRAKKVVKARDVWNAM 397

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +    ETG P++  KD  N+++ Q + G +  SNLC EI   +S++ETAVC +GSI L  
Sbjct: 398 IITQIETGMPYVLNKDSVNVKNMQSNAGTITGSNLCAEIVEYTSTDETAVCVIGSIVLQN 457

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           +  N  +D++ L   ++   + LD  ID+  + I +AK SN   R IG+G+ G Q     
Sbjct: 458 YVKNGAYDFEDLRKHVKILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFK 517

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +P+ S  A  +  E  E I F A+ AS ELA+E G + +F+GS   +GV      G  
Sbjct: 518 LRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTE 577

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                       +RL W  L++RVK  G+RNS   A+ PTA+ A ICG  ++++P   NL
Sbjct: 578 P----------VTRLDWKTLEERVKK-GVRNSLTTALMPTASTAQICGSVEAMEPITSNL 626

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  ++G+F VVN++LV +L  R  W EAM + +  + GSI  +  I  +LK I+ TA+
Sbjct: 627 YSRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAW 686

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           E+    +I+ A+ R  ++DQ QS+NL++  PS K +  +   AW  GLKT  YY RS+ A
Sbjct: 687 ELSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPA 746

Query: 909 TSVEKSTL 916
            +    T+
Sbjct: 747 ANAIAVTV 754


>gi|331235025|ref|XP_003330173.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309309163|gb|EFP85754.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 805

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 266/733 (36%), Positives = 404/733 (55%), Gaps = 29/733 (3%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +  + P+YA + AR  +  L +E         +K     ++ LY                
Sbjct: 1   MTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLYTYVNPINGRPSSMISQ 52

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
                +  +   L + + Y+RDF + Y G + L   Y L I G   E PQ   MRVA+G+
Sbjct: 53  ETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIKGKVAERPQHMLMRVAVGI 112

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGAL 387
                   ++A+  YNL+S  +F  ++PTLFN+GT HPQLSSCFL     D + GI+  L
Sbjct: 113 HG---MDVEKAIRTYNLMSEKYFTHASPTLFNAGTPHPQLSSCFLVASKSDSIDGIYDTL 169

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446
           +  AM++K +GG+G     +R  G++I GTNG S G++P L+V N+TA  V+QG  KR G
Sbjct: 170 KTCAMISKSAGGIGLHINNIRATGSYISGTNGYSNGIVPMLRVFNNTARYVDQGGNKRPG 229

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLE WH DV ++LDLRKN G +  R  D+  A WIPDLFM RV +N  W LF P E
Sbjct: 230 AFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMSRVEKNQDWPLFCPAE 289

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D+YG+EFE  +  YE+     E +  + + A  LW  +L    ETG+P++ +KD 
Sbjct: 290 APGLADVYGEEFEALFAKYEK-----ENRAKKTVKAQKLWYAILEAQTETGNPFMLYKDA 344

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N +S Q+++G + SSNLCTEI   S+ +E AVCNL SI L  +  + ++D++KL    +
Sbjct: 345 ANKKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIVDGKYDFNKLHEVTK 404

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
                L+ +ID+N + + +AKKSN  HR IG+G+ G   A  +L +P+ SPEA ++  + 
Sbjct: 405 EVTYNLNKIIDVNYYPVPEAKKSNMRHRPIGIGVQGLADAFQILKLPFESPEAKKLNTQI 464

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E +   ++ AS ELA + G Y +F GS   QG+   D             +  +    W
Sbjct: 465 FETLYHASLEASNELAIKEGPYETFPGSPASQGILQFDMWN----------VKPSDLWEW 514

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D LK++VKT G+RNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F +VN +L
Sbjct: 515 DSLKEKVKTTGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVNPWL 574

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           + EL +  LWD+ M + +  H GSI NI  IP ++K ++ T +EI    +++ A+ R  +
Sbjct: 575 LKELVEMGLWDDEMKNRIIAHQGSIQNIPNIPTEMKAVYKTVWEISQKIILDMAADRGAF 634

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQ+QSLN++L  P+  +L  ++  AW  GLKT  YYLR+R+A +  + T+         
Sbjct: 635 IDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDKKLQDEAK 694

Query: 926 VPVTDPNSSTHSL 938
                    + S 
Sbjct: 695 AANKAATLVSSSA 707


>gi|311743884|ref|ZP_07717690.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313014|gb|EFQ82925.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 828

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 303/836 (36%), Positives = 475/836 (56%), Gaps = 34/836 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLSESDLETA 201
            + ++  DGT   ++   +   +EEA +GL D  ++   + SE    ++DG++   L+ A
Sbjct: 2   TITVIKRDGTRAPYDGYEIARSIEEAATGLPDQVARVTQLQSELEITLFDGITSEQLDEA 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           ++  +   ++ +P +  + +R L++ L ++V        +  T  E+   +   F   + 
Sbjct: 62  VVGVALQNVKDDPAFDTIASRLLVKTLYKKVFG------EGVTRDEVDAFHGPAFVASVV 115

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQA 319
            GV+  LL   + + +DL  L   L   RD    Y+G+Q +  RY  +  +G+ +E+PQ 
Sbjct: 116 RGVELGLLDHRLAERYDLEVLGAALDPARDDLLRYIGVQTMRTRYMLVEPDGTPLEVPQF 175

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           F+MRV+MGLAL E +    A+ FY+ +S   ++ +  TL N+GT + QLS+CF+  + DD
Sbjct: 176 FWMRVSMGLALDEADPTAAALAFYDKMSRLEYLAAGSTLVNAGTGYAQLSNCFVMQMEDD 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  ++++   L K +GG+G   + +R  G+ I   +  S G IPF+   + T  A++
Sbjct: 236 IEHIAKSVRDVMWLTKGTGGIGLSVSKLRSEGSPIRSNHTTSTGPIPFMHTIDSTLRAIS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           +GGK+ GA+C Y+E WH+D  +FLDLR N+GD  RRT   NTA WI D FMKRV  +  W
Sbjct: 296 RGGKKFGALCFYMENWHLDFAQFLDLRANSGDPYRRTRTANTAVWISDEFMKRVADDLDW 355

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            LF P +V DL +L+G  F   Y  Y  +AD G ++  +K+ A   +R +L  L  + HP
Sbjct: 356 YLFDPLDVPDLTELFGAAFSARYAEYVAEADAGRLR-HKKLRAREQFRAILVSLQASSHP 414

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ 615
           W+T+KD  N R+   + G +H SNLCTEITL    +  AVCNL SINL  H     ++  
Sbjct: 415 WLTWKDTINTRALNHNTGTIHLSNLCTEITLPQDRDNVAVCNLASINLSRHLVGRRSDAH 474

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+D+LA + R AVR LDN+IDI   ++ ++++SN  +RA+GLG+MGF   +      Y 
Sbjct: 475 IDWDRLAGSTRLAVRQLDNLIDITISSVPESERSNEQNRALGLGVMGFTDVVERFGWSYE 534

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734
           S +A ++ DE MEF+S+HAI AS +LA+ERGAY +F+GS W QG+ PIDS+ LLA  R  
Sbjct: 535 SEQAYDLIDEVMEFVSWHAIDASADLARERGAYPNFEGSRWSQGLVPIDSLDLLAADRGV 594

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            + ++RT+RL WD L+ +V   G+RNS  MA+APTA+I  + G +  +DP +  ++ ++ 
Sbjct: 595 PVEVDRTTRLDWDALRAKVAG-GVRNSTLMAVAPTASIGLVAGTTPGLDPQFSQIFSRAT 653

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            SG F  VN  LV +L+   LW E +  DL  H G +  ++ +P +L++I+ T+F++ P 
Sbjct: 654 SSGKFLEVNRNLVEDLQALGLW-ETVREDLLRHQGDLSKVDGVPAELQEIYRTSFQLSPY 712

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
             +  A+R QKWIDQA S N+YL      ++  +Y  AW MG+KTTYYL      + E+S
Sbjct: 713 AFLHVAARAQKWIDQAISRNIYLQSRDVGEMAELYAAAWRMGVKTTYYLHMMPRHTAEQS 772

Query: 915 TLKGVDGKLN------------AVPVTDPNSSTHSLGIPSSCTSDTE----CEVCQ 954
           T+K      +            AV           +   ++C  D      C+ CQ
Sbjct: 773 TVKVNKAASSTPAGGAARRGFGAVATAPVEVQELEVVDGAACPVDPAERLQCDSCQ 828


>gi|314928744|gb|EFS92575.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL044PA1]
          Length = 854

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 306/854 (35%), Positives = 469/854 (54%), Gaps = 40/854 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +         ++  L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYF 122

Query: 257 CRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +   F+L  LA  L   RD    + G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL++ E +    A+  YN +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              DDL  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G  F   Y  Y  QA  G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + T+VCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + ++D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SPEA EI D  +EFIS+HAI  S +LA ERG+Y  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T G+RN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LWD     +L    G    I+ IP  L+ ++ T+F
Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLWDST-REELLRRQGDPSEIDAIPASLRHLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DP+  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKSTLKGVDG-------------------------KLNAVPVTDPNSSTHSLGIPSSC 944
           + E+ST+                              K       +    + +L   ++C
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATTVRRSSRTATIEKPVIEEFDEVKPVSLNLIDGTTC 840

Query: 945 TSDT----ECEVCQ 954
             D     +CE CQ
Sbjct: 841 PVDPQERQQCESCQ 854


>gi|313836279|gb|EFS73993.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA2]
 gi|314971219|gb|EFT15317.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Propionibacterium acnes HL037PA3]
 gi|328906507|gb|EGG26282.1| ribonucleotide-diphosphate reductase subunit alpha
           [Propionibacterium sp. P08]
          Length = 854

 Score =  623 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 306/854 (35%), Positives = 469/854 (54%), Gaps = 40/854 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196
           A     +++   DG+L  ++   +   + ++  GL D  ++   + +E    ++DG++  
Sbjct: 3   ADPISTIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTD 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ A+I  +    + +P +  + +R  ++KL +EV    +         ++  L+  YF
Sbjct: 63  ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYF 122

Query: 257 CRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
            R I + V    L E +   F+L  LA  L   RD    + G++ + +RY L   +   +
Sbjct: 123 PRTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKAL 182

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E+PQ F+MRVAMGL++ E +    A+  YN +S+   + +  TL N+GT   QLS+CF+ 
Sbjct: 183 EVPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              DDL  I   +++   + K +GG+G   + +R  G+ I   N  S G IPF+   + T
Sbjct: 243 RTEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDST 302

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             AV++GGK+ GA+C YLE WH+D  +FLDLR+N+GD  RRT   +TA WI D FMKRV 
Sbjct: 303 LRAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++  W LF P E  DL +L G  F   Y  Y  QA  G+IK FR+ +A   +R +L  L 
Sbjct: 363 KDEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQ 422

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610
            T HPW+T+KD  N R+   + G +HSSNLCTEI L    + T+VCNL S+NL AH    
Sbjct: 423 TTSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGP 482

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
               + ++D+LA+T R AVR LDN++DI    + +A++SN  +RAIGLG+MG    L  +
Sbjct: 483 RGKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            +PY SPEA EI D  +EFIS+HAI  S +LA ERG+Y  F+GS W +G+ P+D++ +L 
Sbjct: 543 RVPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLE 602

Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             R   + ++RT+R+ WD L+ +V+T G+RN+  MAIAPTA+I  I G +  +DP +  +
Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQM 661

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + ++  +G F  VN  LV +LK   LWD     +L    G    I+ IP  L+ ++ T+F
Sbjct: 662 FSRATSAGKFLEVNRNLVADLKDLGLWDST-REELLRRQGDPSEIDAIPASLRHLYRTSF 720

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DP+  +  A+R QKW+DQA S N+YL   S   ++ +Y  AW MG+KTTYYL      
Sbjct: 721 TLDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780

Query: 910 SVEKSTLKGVDG-------------------------KLNAVPVTDPNSSTHSLGIPSSC 944
           + E+ST+                              K       +    + +L   ++C
Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATTVRRSSRTATIEKPVIEEFDEVKPVSLNLIDGTTC 840

Query: 945 TSDT----ECEVCQ 954
             D     +CE CQ
Sbjct: 841 PVDPQERQQCESCQ 854


>gi|297268644|ref|XP_002799731.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 695

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 269/711 (37%), Positives = 411/711 (57%), Gaps = 23/711 (3%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M+ LY        +           ++  +   L + + Y+RDF++ Y G + L   Y L
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            ING   E PQ   MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQ
Sbjct: 61  KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P
Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVP 177

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WI
Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  L
Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQL 292

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+
Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G  
Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D
Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +            T    W+ LK+ +   G+RNS  +A  PTA+ A I G ++SI+P
Sbjct: 473 MWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK++
Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYL
Sbjct: 583 YKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642

Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           R+R A +  + TL          +   +     ++  +  S  +  EC +C
Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|194382560|dbj|BAG64450.1| unnamed protein product [Homo sapiens]
          Length = 695

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 268/711 (37%), Positives = 409/711 (57%), Gaps = 23/711 (3%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M+ LY        +           ++  +   L + + Y+RDF++ Y G + L   Y L
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            ING   E PQ   MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQ
Sbjct: 61  KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG   G++P
Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNPNGLVP 177

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WI
Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  L
Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQL 292

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+
Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G  
Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D
Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P
Sbjct: 473 MWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK++
Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYL
Sbjct: 583 YKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642

Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           R+R A +  + TL          V   +     ++  +  S  +  EC +C
Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|157953938|ref|YP_001498829.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068586|gb|ABU44293.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 767

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 260/796 (32%), Positives = 424/796 (53%), Gaps = 53/796 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--------------VSSKIVLSE 184
            P+   + ++  DG+  + +  ++   ++  C  +                V    +++ 
Sbjct: 4   RPMNRLMVVLKRDGSKENISFDKILQRIQRLCWPIDSKPVYKGSRAMTGLSVDVSKIVAS 63

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
              ++ DG+S   L+      S ++  + P+Y  + AR  +  L+++    +        
Sbjct: 64  VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDA----- 118

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           + E+  L  + F   IE+                    + + Y+RD+ F+Y G + +   
Sbjct: 119 YAEIAHLLSDDFKENIEKH--------------ADEYQSFIDYDRDYDFDYFGFKTMERL 164

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           Y   +N   +E PQ  ++RVA+GL   +  +     E Y+ LS   F  ++PTLFN+G +
Sbjct: 165 YLTKVNNKIVERPQHVYLRVAIGLWGSDIARV---KETYDALSCRKFTHASPTLFNAGFK 221

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             QL+SCFL TV D L  I+  L + A L+K+ GGLG + + +RG G+ I+GTNG+S G+
Sbjct: 222 KAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINISEIRGRGSRINGTNGESDGI 281

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +P LKV + T+   NQGG+RKG+   YLE  H DV +FL +++N G++  R  ++  A W
Sbjct: 282 VPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVW 341

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + DLFMKRV  +A W+LF P E   L D +G E+   YE YE      E K    + A  
Sbjct: 342 LNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYERYEA-----EGKAKNVVKARD 396

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W  M+T + ETG P+++ KD  N ++ Q + G +  SNLC EI   +S EETAVC +GS
Sbjct: 397 VWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNLCNEIVEYTSKEETAVCVIGS 456

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           + L  +  N++FD+D L   ++   + LD  ID+  + I++A+ SN   R IG+G+ G Q
Sbjct: 457 VVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQ 516

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
                L +P+ S EA ++  E  E I + A+ AS+ELA+  G Y +F+GS   +G+    
Sbjct: 517 DVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEIHGPYPTFEGSPASKGILQYH 576

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +  +          S L W  L++RVK  G+RNS   A+ PTA+ A ICG  ++ +P
Sbjct: 577 LWDVTPK----------SNLDWRGLEERVKK-GVRNSLVTALMPTASTAQICGSIEAFEP 625

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              NLY +  ++G+F VVNS+LV EL +R  W E+M + +  + GSI  +  I   +K +
Sbjct: 626 ITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSESMKNQIIANGGSIQKVIGIHPSVKAV 685

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYL 903
           + TA+++    +I+ A+ R  ++DQ QS+NL+L +P+ K +  +    W  GLKT  YYL
Sbjct: 686 YKTAWDLSMKSVIDMAADRGPFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYL 745

Query: 904 RSRSATSVEKSTLKGV 919
           RS+ ++S    T+   
Sbjct: 746 RSKPSSSAIAVTIDND 761


>gi|332211481|ref|XP_003254847.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Nomascus leucogenys]
          Length = 695

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 269/711 (37%), Positives = 409/711 (57%), Gaps = 23/711 (3%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M+ LY        +           ++  +   L + + Y+RDF++ Y G + L   Y L
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            ING   E PQ   MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQ
Sbjct: 61  KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P
Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVP 177

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WI
Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  L
Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQL 292

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+
Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G  
Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D
Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P
Sbjct: 473 MWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK++
Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYL
Sbjct: 583 YKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642

Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           R+R A +  + TL          V   +     ++  +  S  +  EC +C
Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|114635721|ref|XP_001159888.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Pan troglodytes]
          Length = 695

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 269/711 (37%), Positives = 410/711 (57%), Gaps = 23/711 (3%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M+ LY        +           ++  +   L + + Y+RDF++ Y G + L   Y L
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            ING   E PQ   MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQ
Sbjct: 61  KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117

Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P
Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVP 177

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WI
Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           PDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  L
Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQL 292

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+
Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G  
Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D
Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +            T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P
Sbjct: 473 MWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK++
Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903
           + T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYL
Sbjct: 583 YKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642

Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           R+R A +  + TL          V   +     ++  +  S  +  EC +C
Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693


>gi|209171046|ref|YP_002268193.1| agip163 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436637|gb|ACI28864.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus]
          Length = 772

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/817 (33%), Positives = 423/817 (51%), Gaps = 53/817 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
           KL ++  DG+        +  +V+  C GL  + V    V  +  K +  G+S  +L   
Sbjct: 2   KLYVVKRDGSHQEVRLDEITALVQSLCYGLNAEYVDPAAVTVKVVKGVRPGVSTEELNAY 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               + ++     +YA +  R L++ L + + ++  +  +    H +             
Sbjct: 62  AADVAASMTYIHYDYALLAGRILVDNLHKRLDSSFSEIIKNLHGHGLVS----------- 110

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                      + +     L   + +E DF ++Y G + L + Y L I+    E PQ   
Sbjct: 111 ------DDLLRISETHAATLDAAIAHELDFEYKYFGYKTLENGYLLKIDNRVAERPQHML 164

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380
           MRVA+G+   + E    A+E Y ++S   F  ++PTLF++GTR PQ+ SCFL  V DD +
Sbjct: 165 MRVALGIHGDDIED---AIETYRMMSQKLFTHASPTLFSAGTRIPQMCSCFLLGVRDDSI 221

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L + A ++KY GG+G +   VR  G+ I+ TNG + G+ P ++V N+    V+Q
Sbjct: 222 DGIYRTLGDCAAISKYGGGIGVNVHQVRARGSKINSTNGTASGLEPMVRVFNNMVRHVDQ 281

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGA+  Y+E WH D+   L+L++N G +  +  D+  A W+PDLFM+RV  +  W+
Sbjct: 282 GGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMRRVNADDMWS 341

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P +   L D YG EFE  YE YE      E +  +++ A  L R ++    ETG P+
Sbjct: 342 LMCPHQCPGLADCYGDEFERLYERYE-----SEGRYRQRVRAQDLHRFIVETQVETGGPY 396

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618
           + FKD CN +S QQ++GV+  SNLC EI   S +EETAVCNL SI +          +D+
Sbjct: 397 MLFKDACNRKSNQQNLGVIKCSNLCAEIVQYSDAEETAVCNLASIAVNRCVRVDEMTYDF 456

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL +  +  VR L+ +ID N + I  A++SN  HR IG+G+ G   A  LL +PY S E
Sbjct: 457 EKLKAITKVVVRNLNKIIDRNHYPIASARRSNEKHRPIGVGIQGLADAFVLLRMPYESEE 516

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I + A+ AS ELAQ  G+YS+F GS   +GV   D              
Sbjct: 517 AAVLNKQIAETIYYGALEASCELAQRDGSYSTFAGSPASRGVLQYDMWNATP-------- 568

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             ++   W  LK  ++  G+RNS  +A  PTAT A I G ++S +P   N+Y++  ++G+
Sbjct: 569 --SALWDWQALKDDIRAHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGE 626

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+++L + +++   + + +  H GSI NIE IPD +K ++ TA+E+    +IE
Sbjct: 627 FQVVNQYLIDDLIKLNVYTPEIRNAIFAHKGSIQNIEGIPDSVKNLYKTAWEMKAKRMIE 686

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS NL++ +P+   +  I+  +W  GLKT  YYLR++ A         
Sbjct: 687 MAADRNAFIDQSQSFNLFVAQPTYAVMTSIHNYSWRCGLKTGMYYLRTKPAAHT------ 740

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     V             +    D  C  CQ
Sbjct: 741 ------QQFTVEQQQQPQCKRKRHNDKEDDDVCFSCQ 771


>gi|62084010|emb|CAI72629.1| ribonucleotide reductase, large subunit [Euproctis pseudoconspersa
           nucleopolyhedrovirus]
          Length = 769

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/793 (32%), Positives = 425/793 (53%), Gaps = 39/793 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196
           + +  KL +   +G   + +  ++   ++     L    +    +  +  K +Y G+S  
Sbjct: 2   SSVGNKLYVTKRNGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTE 61

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+      +  +     +YA +  R +++ L + V  +  +  ++   H +        
Sbjct: 62  ELDMHAARETANMAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNLVS------ 115

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
                          S++  + + L + + +  D+ ++Y G + L + Y   I     E 
Sbjct: 116 -----------DELLSIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKIAER 164

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q   MRVA+G+  ++ E    A E Y+L+S   F  ++PTLF +GT+ PQLSSCFL T+
Sbjct: 165 IQHMLMRVAIGVHGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTL 221

Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ A+++K+ GG+G +   VRG G+ I  T+G + G+   L+V N+  
Sbjct: 222 REDSITGIYETLRDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAV 281

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKRKGA+  YLE WH+DV +FL+L++N G + ++  D+  A W+PDLFM+RV  
Sbjct: 282 RHVDQGGKRKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKD 341

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+L  PD    L D+YG +F+  Y  YER     E K   ++ A  L++ ++    E
Sbjct: 342 DGVWSLMCPDRCPGLSDVYGNQFDELYAQYER-----EGKQVSQVPARDLFKFIIETQVE 396

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P++ +KD CN ++ Q ++G +  SNLC+EI   S +++ AVCNL SI +     N  
Sbjct: 397 TGTPYMLYKDACNRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGA 456

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L    +T V+ L+ +ID+N + +E+A+ SN  HR +G+G+ G   A  +L +PY 
Sbjct: 457 FNFQTLKRITKTVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYE 516

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I + A+ AS ELA+  GAY S+ GS   +G+   D           
Sbjct: 517 SDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK+R+ T G+RNS  +A  PTAT A I G ++S +P   NLYV+  +
Sbjct: 572 -----TNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVL 626

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N  LV++L   +L+DE M +++    GS+  I  IP+ +K+++ T +E+    
Sbjct: 627 AGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKR 686

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LIE A  R  + DQ+QS N+++ EP+  ++  I+  AW  GLKT  YYLR++ A    + 
Sbjct: 687 LIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQF 746

Query: 915 TLKGVDGKLNAVP 927
           T+     +     
Sbjct: 747 TVDKSKLRRRQKA 759


>gi|228861716|ref|YP_002854736.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425164|gb|ACO53576.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 769

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/793 (32%), Positives = 425/793 (53%), Gaps = 39/793 (4%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196
           + +  KL +   +G   + +  ++   ++     L    +    +  +  K +Y G+S  
Sbjct: 2   SSVGNKLYVTKRNGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTE 61

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+      +  +     +YA +  R +++ L + V  +  +  ++   H +        
Sbjct: 62  ELDMHAARETANMAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNLVS------ 115

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316
                          S++  + + L + + +  D+ ++Y G + L + Y   I     E 
Sbjct: 116 -----------DELLSIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKVAER 164

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            Q   MRVA+G+  ++ E    A E Y+L+S   F  ++PTLF +GT+ PQLSSCFL T+
Sbjct: 165 IQHMLMRVAIGVHGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTL 221

Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D + GI+  L++ A+++K+ GG+G +   VRG G+ I  T+G + G+   L+V N+  
Sbjct: 222 REDSITGIYETLRDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAV 281

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QGGKRKGA+  YLE WH+DV +FL+L++N G + ++  D+  A W+PDLFM+RV  
Sbjct: 282 RHVDQGGKRKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKD 341

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  W+L  PD    L D+YG +F+  Y  YER     E K   ++ A  L++ ++    E
Sbjct: 342 DGVWSLMCPDRCPGLSDVYGNQFDELYAQYER-----EGKQVSQVPARDLFKFIIETQVE 396

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P++ +KD CN ++ Q ++G +  SNLC+EI   S +++ AVCNL SI +     N  
Sbjct: 397 TGTPYMLYKDACNRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGA 456

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++  L    +T V+ L+ +ID+N + +E+A+ SN  HR +G+G+ G   A  +L +PY 
Sbjct: 457 FNFQTLKRITKTVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYE 516

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I + A+ AS ELA+  GAY S+ GS   +G+   D           
Sbjct: 517 SDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                T+   W  LK+R+ T G+RNS  +A  PTAT A I G ++S +P   NLYV+  +
Sbjct: 572 -----TNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVL 626

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N  LV++L   +L+DE M +++    GS+  I  IP+ +K+++ T +E+    
Sbjct: 627 AGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKR 686

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LIE A  R  + DQ+QS N+++ EP+  ++  I+  AW  GLKT  YYLR++ A    + 
Sbjct: 687 LIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQF 746

Query: 915 TLKGVDGKLNAVP 927
           T+     +     
Sbjct: 747 TVDKSKLRRRQKA 759


>gi|90592870|ref|YP_529823.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
 gi|71559320|gb|AAZ38319.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
          Length = 779

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/817 (32%), Positives = 424/817 (51%), Gaps = 46/817 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           +L ++  DG+    +   ++  +E  C  L    V++ +V     K +  G++  +L   
Sbjct: 2   QLHVIRRDGSRKEVHLHDIKAGIETLCFNLNKQYVNAAVVALNIMKGIRPGITTEELNVY 61

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
                 ++     ++A +  R L++ L  ++  +  +       H++             
Sbjct: 62  AADVVASMTYIHHDFAVLAGRILVDDLHNKIDASFSEVVFNLHRHKLVS----------- 110

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                     S+++     +   + +  D+ +++ G + L + Y L I+    E PQ   
Sbjct: 111 ------DELASVVESHGDEINEAIDHAVDYTYKFFGYKTLENGYLLKIDNQVAERPQHML 164

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           MRVA+G+   + +    A+E Y ++S   F  ++PTLF++GT   Q+ SCFL  +  D +
Sbjct: 165 MRVALGIHGDDIQD---AIETYRMMSRKMFTHASPTLFSAGTPMAQMCSCFLLGIRSDSI 221

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+  L + A ++KY GGLG +   VR  G  I+ TNG + GV P ++V N+    V+Q
Sbjct: 222 DGIYETLGDCAAISKYGGGLGVNVHCVRSRGTRINSTNGVASGVEPMVRVFNNMVRHVDQ 281

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKRKGA+  Y+E WH D+   L+L++N G +  +  D+  A W+PDLFM+RV  N  W+
Sbjct: 282 GGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMERVNANGVWS 341

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P++   L D YG  FE  Y  YE      E +  +++ A  L R ++    ETG P+
Sbjct: 342 LMCPNKCPGLSDCYGSAFEELYRKYEE-----EGRYQQQVRAQDLHRFIVETQVETGGPY 396

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDY 618
           + +KD CN +S QQ++G +  SNLC EI   S +EETAVCNL SI  N        +FD+
Sbjct: 397 MLYKDACNRKSNQQNLGTIKCSNLCAEIVQYSDAEETAVCNLASIAVNSCVVVDEARFDF 456

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL    +  VR L+ +ID N + IE A+ SN  HR IG+G+ G   A  LL +PY S E
Sbjct: 457 EKLRHITKVVVRNLNKIIDRNRYPIESARMSNMKHRPIGVGIQGLADAFVLLRMPYESDE 516

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A+ +  +  E I F A+ AS ELA+  G+YSSF+GS   +G+   D             +
Sbjct: 517 AMLLNRQIAETIYFGALEASCELAKTWGSYSSFQGSPASEGILQYDMW----------DV 566

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             TS   W  LK+ +K  G+RNS  +A  PTAT A I G ++S +P   N+Y++  ++G+
Sbjct: 567 RPTSLWDWGTLKEDIKKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGE 626

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN +L+++L +  L+   M + +  H GSI  I+ IPD +K+++ TA+E+    +IE
Sbjct: 627 FQVVNQYLIDDLIKLKLYTSEMRNAIFAHKGSIQAIDGIPDHIKRLYKTAWEMKCKRMIE 686

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLNL++ EP+   +  I+   W  GLKT  YYLR++ A   ++ T++
Sbjct: 687 MAADRNAFIDQSQSLNLFVAEPTYALMTSIHDYTWRSGLKTGMYYLRTKPAAHTQQFTVE 746

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                           + +             C  C+
Sbjct: 747 QQFTVERGDVCKKRKINNYDEDAAQ-----NVCASCE 778


>gi|255721743|ref|XP_002545806.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240136295|gb|EER35848.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 818

 Score =  618 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/843 (32%), Positives = 436/843 (51%), Gaps = 61/843 (7%)

Query: 144 KLKIMMDDGTLI-SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            +K+ +  G     F+  ++  +++E    L+++    VL    K +   ++   L T +
Sbjct: 1   MVKVKVLFGETEQDFDESKVLKLLQELSFNLENLQLDDVLESVQKGLPATVTVYQLYTFI 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                + I   P+YA +  R  L KL  +V        ++  +++             + 
Sbjct: 61  AEVIASRIIYNPDYAILAGRVELRKLYLKVPYNFSDNVERLRNYKSHGA---------KS 111

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++     +    +   RD  F Y G++ L + Y L I+    E+PQ  F+
Sbjct: 112 YSPISSKFYEVVKKHKEFFDGLIDKSRDDEFTYFGIKTLENSYLLKIDSEPAELPQFLFL 171

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RVA+G+ L   E      E Y+L+S  +F+ ++PTL+N+G     LSSCFL  + DD + 
Sbjct: 172 RVAIGIHL---EDLGSVAETYDLMSKKYFIHASPTLYNAGGEFNYLSSCFLIAMKDDSID 228

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L E+A+++K SGG+G     VR  G++I GTNG + G++P L+V N+TA  V+QG
Sbjct: 229 GIYKTLHESALISKASGGIGIHVHEVRSNGSYIAGTNGIANGLVPMLRVFNNTARYVDQG 288

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KR GA   Y+E WH D+ + L++RKN G +  RT D+    WIPDLFM+RV  +  WT
Sbjct: 289 GGKRPGAFAIYIEPWHGDIFDILEMRKNHGSEELRTRDLFYGLWIPDLFMQRVKADEYWT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L SP E   L D+YG +F+  YE YE+Q    +I+      A  LW  +L    ETG P+
Sbjct: 349 LMSPSEAPGLSDVYGDDFKELYEKYEKQGLGTKIR------AHKLWLAILESQTETGGPY 402

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + +KD CN +S Q+++G + SSNLC EI   SS EETAVCNLGS+ L  +         +
Sbjct: 403 MLYKDACNEKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLGSLALPTYLKTSDDEVIE 462

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD++KL S  +   + L+ VID+  + +E A+ SN  +R I LG+ G       L +P+ 
Sbjct: 463 FDFEKLHSVTKVLAKNLNKVIDVTLYPVETAEYSNKRNRPIALGVQGLADLFAELRLPFE 522

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S  A ++  +  E I   A+ ASVEL+ + G Y +F+GS   +G+   D           
Sbjct: 523 SEAARKLNIQIFETIYHAALEASVELSIQDGPYETFQGSPASEGILQFDMWNHTP----- 577

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                +    W++LK+ ++  G+RNS  +A  PTA+ + I G ++  +P   NLY +  +
Sbjct: 578 -----SKMYDWNKLKESIQKFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVL 632

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +L+ +L    +W+ AM + +   +GSI NI+ IP D+K+++ T +EI    
Sbjct: 633 SGEFQVVNKYLIKDLMDLGIWNSAMRNKIMMENGSIQNIQSIPKDIKELYKTVWEISQKV 692

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           +I+ A+ R K+IDQ+QS+N++L EP+  KL   +  AW  GLKT  YYLR+++A+   + 
Sbjct: 693 IIDMAADRGKFIDQSQSMNIHLREPTFGKLTSCHFYAWKQGLKTGMYYLRTQAASRAIQF 752

Query: 915 TLKGVDGKLNAVPVTDPNSSTHS-----------------------LGIPSSCTSDTECE 951
           T+   + +  A      +                               P +C  +   E
Sbjct: 753 TVDATEAEKAANEKPRGSLKRKKYLETPPRKKTVYSTPDSEVYDIHDSTPITCNIEDS-E 811

Query: 952 VCQ 954
            CQ
Sbjct: 812 SCQ 814


>gi|322792463|gb|EFZ16447.1| hypothetical protein SINV_80023 [Solenopsis invicta]
          Length = 802

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 264/758 (34%), Positives = 413/758 (54%), Gaps = 43/758 (5%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
             V  +  + +Y G++   L+     ++ T+    P+YA + AR  +  L +E   +  +
Sbjct: 1   SAVAIQVIRGLYSGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKETKKSFSE 60

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
                    M  LY        +        + +++  +   L + + Y+RDF++ Y+G 
Sbjct: 61  V--------MHDLYYARNSITNQHTPIISEHYYNIIKNNADRLDSAIIYDRDFSYNYIGF 112

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + L   Y L ING  +E PQ   MRVA+G+   + +K    +E YN LS  +F  ++PTL
Sbjct: 113 KTLERSYLLKINGKIVERPQHMLMRVAVGIHENDIDKV---IETYNYLSERYFTHASPTL 169

Query: 359 FNSGTRHPQLSS---------CFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           FN+ T + Q+SS         CFL T+  D + GI+  L++ ++++KY+GG+G +   +R
Sbjct: 170 FNACTNNQQMSSLRLISEALLCFLLTLENDSIKGIYSMLKKCSLISKYAGGIGINVHCIR 229

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
                       + G++  LK+ N+ AV V+QG  KR GA   YLE WH D+ EFL+L++
Sbjct: 230 AKS---AEDTNTTNGLVSVLKLYNEIAVYVDQGGNKRPGAFAIYLEPWHADIFEFLELKR 286

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           N GD   R  D+    WIPDLFM+RV  +  W+L  P E   L D++G EF+  Y  YE+
Sbjct: 287 NIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMCPYESPGLADVWGDEFKELYIRYEK 346

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E +  +++ A  +W  +L    ETG P++ +KD CN +S  QH+G +  SNLCTE
Sbjct: 347 -----EGRYRKQVEARTVWLAILRSQGETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCTE 401

Query: 588 ITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           I   S   E AVCNL SI  N+  +     FD+DKL +  +   R LD VID+N + I +
Sbjct: 402 IVEYSGPGEVAVCNLASIAVNMFVNTDTKTFDFDKLKTVAKIVTRNLDKVIDVNFYPIPE 461

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            K SN  HR IG+G+ G   A  L+   + S EA E+  +  E + + A+  S ELA E+
Sbjct: 462 TKASNQKHRPIGIGIQGLADAFLLMRYSFDSKEAKELNIKIFETLYYGALECSCELAAEK 521

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y +++GS   +G+   D             +  T    WDELK ++   G+RNS  +A
Sbjct: 522 GTYETYQGSPVSKGILQYDMWN----------VKPTDLWNWDELKAKIAEHGVRNSLLIA 571

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ A I G ++SI+P   N+YV+  +SG+F +VN  L+ +L  R LWDE M +++ 
Sbjct: 572 PMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEIL 631

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
            + GS+ NIERIPDDLK ++ T +EI    ++E A+ R  +IDQ+QSLN+++ +P+ +KL
Sbjct: 632 ANFGSVQNIERIPDDLKMLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEKL 691

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
             ++   W  GLKT  YYLR++ A +  + T+     +
Sbjct: 692 TSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDQSKLQ 729


>gi|45185841|ref|NP_983557.1| ACR155Wp [Ashbya gossypii ATCC 10895]
 gi|44981631|gb|AAS51381.1| ACR155Wp [Ashbya gossypii ATCC 10895]
          Length = 864

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 276/821 (33%), Positives = 432/821 (52%), Gaps = 31/821 (3%)

Query: 144 KLKIMMDD-GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLET 200
           K+ I+ DD G   +F+ ++L   + +   GL+  D      +      +   + +S+L  
Sbjct: 6   KIFIISDDSGLTEAFDERKLLESLRKLQFGLKINDADIDKAVKRIAAGIGGDIRDSELVA 65

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA------THHEMQCLYPE 254
            +  +  ++I + P+++ + AR  ++ L + +L   +            +          
Sbjct: 66  YIGETLASMITRHPDFSLLAARVEIKVLHKRLLGLGFTGNLAVLCESGDSPEGHATKRKR 125

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                    V+  L   ++   ++  +   +    DF F Y G + L   Y L   G   
Sbjct: 126 AMSPCTRGPVRRELYDLAVQHRNI--IDQAIDDTLDFTFTYFGWKTLCKSYLLKHQGRVH 183

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E PQ  FMRVA+ L    +    R +E Y L+++ +F+ ++PTLFN+GT    LSSCFL 
Sbjct: 184 ETPQYMFMRVALALHGP-SGDIDRVLETYRLMANKYFIHASPTLFNAGTTSQFLSSCFLL 242

Query: 375 TVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            +  D + GI+ AL + A+++K SGG+G   + +R  G++I GTNG S G++P L V N 
Sbjct: 243 GIHEDSIDGIYNALHKAALISKASGGIGIHVSDIRANGSYISGTNGTSNGLVPMLSVFNS 302

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           TA  V+QG  KR GA C YLE WH DV +FL LR+N G +  R  D+    WIPDLFMKR
Sbjct: 303 TARYVDQGGNKRPGAFCIYLEPWHADVFDFLRLRRNHGKEEMRARDLFYGLWIPDLFMKR 362

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+LFSP+E   L D YG+ FE  Y  YER     E++ +R++ A  LWR++L  
Sbjct: 363 VENNGEWSLFSPNEAVGLSDCYGEAFEQLYVRYER-----ELEPYRRVKAQELWREILLS 417

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF- 611
             ETG P++ +KD CN +S Q+++G + SSNLC EI   SS +E AVCNL S+ L     
Sbjct: 418 QTETGGPFMLYKDACNSKSNQKNLGTIKSSNLCCEIVEYSSRDEVAVCNLASVALPTFVS 477

Query: 612 ---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  FDY +L S ++   R LD  IDI  + + +A++SN  HR + LG+ G      
Sbjct: 478 VTSDAITFDYARLHSVVKVMTRNLDKAIDIGDYPVPEAERSNKKHRPLALGVQGLADVFM 537

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L+  P+   EA ++  E  E I   A+  S+ELA E G Y+SF GS   +G    D  G 
Sbjct: 538 LMRFPFNGEEAAQMNREIFETIYHAAVETSIELAAEYGVYASFVGSPASKGELQFDLWGR 597

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
             +    L         WDELK+++K+  G+RNS  +   PTA+ + I G ++S +P   
Sbjct: 598 NKDNYQFLY------DDWDELKEKIKSGPGLRNSLLVGPMPTASTSQILGFTESFEPMTS 651

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +Y +  +SG++T+VN ++V +     +W E + + +    GSI  I+ IP DLK ++ T
Sbjct: 652 MIYTRRVLSGEYTLVNKYMVQDFCDLGIWSEELKNRIIKDGGSIQGIDGIPPDLKDLYKT 711

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
            +E+    LI+ ++ R  ++DQ+QSLNL+L EP+  KL  ++  AW  GLKT  YYLR++
Sbjct: 712 VWELPQRKLIDLSADRAPFVDQSQSLNLFLKEPTMGKLTSMHFYAWKKGLKTGMYYLRTQ 771

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           +A +  + TL   +     V + +  +   S       + +
Sbjct: 772 AAANAIQFTLTDENTLSGPVKLREGAAVAQSPRHARYPSEE 812


>gi|229597646|pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg.
 gi|229597647|pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg
          Length = 676

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/695 (38%), Positives = 405/695 (58%), Gaps = 30/695 (4%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
           A + AR  +  L +E         +K     M+ LY        +           ++  
Sbjct: 2   AILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLA 53

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRV++G+     E  
Sbjct: 54  NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDI 110

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395
             A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K
Sbjct: 111 DAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 170

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLET 454
            +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE 
Sbjct: 171 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 230

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++
Sbjct: 231 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 290

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EFE  Y +YE+Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ
Sbjct: 291 GEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 345

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLD 633
           ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+
Sbjct: 346 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 405

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ S EA  +  +  E I + 
Sbjct: 406 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 465

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A+ AS +LA+E+G Y +++GS   +G+   D   +            T    W  LK+++
Sbjct: 466 ALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKI 515

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R
Sbjct: 516 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 575

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            LW E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSL
Sbjct: 576 GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 635

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           N+++ EP+  KL  ++   W  GLKT  YYLR+R+
Sbjct: 636 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRA 670


>gi|9632159|ref|NP_048985.1| hypothetical protein PBCV1_A629R [Paramecium bursaria Chlorella
           virus 1]
 gi|2447101|gb|AAC96959.1| similar to Schizosaccharomyces ribonucleotide reductase M1 chain,
           corresponds to Swiss-Prot Accession Number P36602
           [Paramecium bursaria Chlorella virus 1]
          Length = 771

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/792 (33%), Positives = 422/792 (53%), Gaps = 55/792 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188
            + ++  DG+  + +  ++   ++  C               +GL +V    +++    +
Sbjct: 13  TMVVLKRDGSKENISFDKILQRIQRLCWPVNSKPVYKGSRAMTGL-NVDVSKIVASVCAS 71

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           + DG+S   L+      S ++  + P+Y  + AR  +  L+++    +        + E+
Sbjct: 72  IVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDA-----YAEI 126

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             L  E F   +E+                      + Y+RD+ F+Y G + +   Y   
Sbjct: 127 AHLLNEDFKENLEKH--------------ADEYQAFVDYDRDYDFDYFGFKTMERLYLTK 172

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +    +E PQ  ++RVA+GL   +  K     E Y+ LS   F  ++PTLFNSG +  QL
Sbjct: 173 VGDKIVERPQHVYLRVAIGLWGSDIAKV---KETYDALSCRKFTHASPTLFNSGFKKAQL 229

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +SCFL TV D L  I+ AL + A L+K+ GGLG + + +RG GA I+GTNG+S G++P L
Sbjct: 230 ASCFLMTVEDSLADIYKALGDCAQLSKHGGGLGINISDIRGRGAMINGTNGESDGIVPML 289

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + T+   NQGG+RKG+   YLE  H D+ +FL +++N G++  R  ++  A W+ DL
Sbjct: 290 KVFDTTSAYANQGGRRKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDL 349

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  +A W+LF P E   L D +G E+   Y  YE      E K    + A  +W  
Sbjct: 350 FMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYTRYEA-----EGKAKNVVKARDVWNT 404

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           M+T + ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC +GS+ L 
Sbjct: 405 MVTTIIETGQPYVANKDTVNKKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLK 464

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            +  N++FD+D L   ++   + LD  ID+  + I++A+ SN   R IG+G+ G Q    
Sbjct: 465 NYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIKEAETSNKRRRPIGVGVQGLQDVFF 524

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ SPEA ++  E  E I + A+ ASVELA+  G + +F+GS   +G+       +
Sbjct: 525 KLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHMWDV 584

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +          S L W  L++RVK  G+RNS   A+ PTA+ A ICG  ++ +P   N
Sbjct: 585 TPK----------SNLDWRGLEERVKK-GVRNSLLTALMPTASTAQICGSVEAFEPITSN 633

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           LY +  ++G+F VVNS+LV EL +R  W E M + +  + GSI  +  I   +K ++ TA
Sbjct: 634 LYSRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTA 693

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907
           +++    +I+ A+ R  ++DQ QS+NL+L +P+ K +  +    W  GLK+  YYLRS+ 
Sbjct: 694 WDLSMKSVIDMAADRGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKP 753

Query: 908 ATSVEKSTLKGV 919
           A+S    T+   
Sbjct: 754 ASSAIAVTVDTE 765


>gi|22788802|ref|NP_690514.1| Rr1 [Heliothis zea virus 1]
 gi|22671562|gb|AAN04389.1|AF451898_94 Rr1 [Heliothis zea virus 1]
          Length = 939

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/789 (31%), Positives = 418/789 (52%), Gaps = 51/789 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-------VSSKIVLSETYKNMYDGLSESDLE 199
           I+  +G++  F+  +L   +E  C  + +       ++   ++++  K +YD +S  +L+
Sbjct: 8   IVKRNGSVERFDPSKLYARIER-CMTMSEPRLTTAFINIAGIVADVEKGLYDRVSTLELD 66

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           T L  +  ++    P+++ + AR  ++ L +   +   +  +      +   Y       
Sbjct: 67  TLLSETCASMSTAHPDHSILAARIAMQALHKRTRSKFSETIRDLYEANIVPQYYF----- 121

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLH-INGSRIEMP 317
                        ++      L + +  +RDF    Y   + L   Y +   +G   E  
Sbjct: 122 ------------DLVQEHADTLDSAIVDDRDFQSLTYFAYKTLERTYLIKLADGKICERV 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
           Q  +MR A+G+  ++ E     +E YNLLS+ +++ STPTL ++ T     +SC+L  + 
Sbjct: 170 QHMYMRTALGIHGRDIESV---IETYNLLSNRYYVHSTPTLCHAATNRSNYASCYLLELK 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + G+   L++ A ++K+ GG+G     +R   + IH TNG + G++P L++ N  + 
Sbjct: 227 EDSIGGVMDTLKDAATISKHCGGVGLHVHKLRCKNSTIHSTNGNASGLVPMLRMYNAMSR 286

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V QG  KR GA+  YLE WH DV +F+++RKN+G +  R  D+  A W+PDLFMKRV  
Sbjct: 287 YVTQGGNKRPGAIAVYLEPWHADVFDFIEMRKNSGFEEARARDLFYALWVPDLFMKRVND 346

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              W+L  PD    L D +G+EFE  Y  YE+     E +  R++ A  LW+ ++T   E
Sbjct: 347 GGYWSLMCPDSSPGLSDCWGEEFEAKYTAYEQ-----EGRYVRRVDARELWKAIVTAQVE 401

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P+I +KD  N  S Q+H+G +  SNLCTEI   +S +ETAVC L S+NL        
Sbjct: 402 TGTPYILYKDTVNRNSNQRHLGTIKGSNLCTEIVEYASPDETAVCVLASVNLPKFVEGKV 461

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F+ + LA T+R   R L+ +ID   + I  A KSN  HR IG+G+ G+  AL ++ I Y 
Sbjct: 462 FNLNLLAKTVRLVTRNLNKIIDNALYPIPSAAKSNFKHRPIGIGVQGYADALAMMGIAYE 521

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
             +++++  +  E I   A++ S +LA+  G Y S+ GS   +G    D   +       
Sbjct: 522 --DSMQLNRDIFETIYHAALTESCQLARVHGVYESYHGSPTSRGELHFDRYSVH------ 573

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                + +  W  L+K +   G+RNS  +A  PTAT + + G ++S +P   N+Y +   
Sbjct: 574 -----SQKCDWSSLRKDIARYGLRNSLLVAPMPTATTSQVFGNAESFEPFTSNMYQRRTQ 628

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F + N  LV +L++ +LW++ M   + Y++GSI NI  IP++L++I+ T +EI    
Sbjct: 629 SGEFQLTNVHLVRDLERLNLWNDDMAQLIMYNNGSIQNITIIPEELRRIYKTVWEIPTKT 688

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A+ R  +IDQ+QS NLY+ EP+  ++  I+  AW  GLKT  YYLR++SAT+    
Sbjct: 689 LIDMAADRGAYIDQSQSFNLYVAEPTYSRMTSIHFYAWNKGLKTGMYYLRTKSATNAIPF 748

Query: 915 TLKGVDGKL 923
           T+      L
Sbjct: 749 TVDVNRCAL 757



 Score = 39.1 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 31 VIKRNGGVTSFDPSK----ISRAIMK-------AFMAVEGKGASRSIRVQDIIKNLTEQT 79
          ++KRNG V  FDPSK    I R +         AF+ + G  A     + D +  L  + 
Sbjct: 8  IVKRNGSVERFDPSKLYARIERCMTMSEPRLTTAFINIAGIVADVEKGLYDRVSTL--EL 65

Query: 80 VTRLLQHNKSALIVH 94
           T L +   S    H
Sbjct: 66 DTLLSETCASMSTAH 80


>gi|256825984|ref|YP_003149944.1| ribonucleoside-diphosphate reductase subunit alpha [Kytococcus
           sedentarius DSM 20547]
 gi|256689377|gb|ACV07179.1| ribonucleoside-diphosphate reductase, alpha subunit [Kytococcus
           sedentarius DSM 20547]
          Length = 875

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 320/886 (36%), Positives = 465/886 (52%), Gaps = 100/886 (11%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
                 P    ++++   G     +  ++   VE  C GL +V    V ++T   +YDG 
Sbjct: 25  EGVPTTPARTTMRVVKRSGEHEQVDVTKIVAAVERCCDGLPEVDPLRVATKTISGLYDGA 84

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           + ++L+   I ++  +   EP Y+++  R L   + +EV                     
Sbjct: 85  TTAELDKLAIATAAEMTATEPQYSRLAGRLLAGVIDKEVRGQGIGS-------------- 130

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYER----DFAFEYLGLQILYDRYF 306
             F   +  G +  L+ +    F       L + +   +    D+ F+Y GL+ +YDRY 
Sbjct: 131 --FSAAVRTGHEQGLIGDETAAFVAEHASRLDDAVYRAQAAHADWRFDYFGLRTVYDRYL 188

Query: 307 LHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L      + +E PQ + MRV+ GL+    E    AVEF+ LLSS  ++ S+PTLFNSGTR
Sbjct: 189 LRHPLTRAVVESPQYWLMRVSAGLSHTGEE----AVEFFELLSSLAYLPSSPTLFNSGTR 244

Query: 365 HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           H Q+SSC+L     DDL  I+    + A L+K++GG+G  ++ +R  GA I GTNG S G
Sbjct: 245 HTQMSSCYLIDSPQDDLDSIYERYHQVAKLSKFAGGIGLAFSRIRSRGALIRGTNGHSNG 304

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++P+L+  + +  AVNQGG+RKGA C YLE WH DVEEFL+LR NTG+D RRTH++N A+
Sbjct: 305 IVPWLRTLDASVAAVNQGGRRKGAACIYLEPWHPDVEEFLELRDNTGEDARRTHNLNLAH 364

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           WIPD FM+RV  +  W+L  PD V +L DL+G  F+ AY   E + D     V R +SA 
Sbjct: 365 WIPDEFMRRVEADGQWSLIDPDAVPELPDLWGPAFDAAYRAAEERGD-----VVRTVSAR 419

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ---------------QHVGVVHSSNLCTEI 588
            L+ +M+  L +TG  W+TFKD  N    Q               Q   VVH SNLCTEI
Sbjct: 420 YLYGRMMRTLAQTGQGWMTFKDASNRACNQTSDDQTPRVAADGTVQPAPVVHLSNLCTEI 479

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ----------------FDYDKLASTIRTAVRVL 632
              +S++ETAVCNLGS+NL AH   +                  D D+L ST+R AV  L
Sbjct: 480 IEVTSNDETAVCNLGSVNLAAHLQWSDGTTGVRPTDPAARATGIDTDRLRSTVRLAVTYL 539

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D VIDIN +  E+A  SN   R IGLG MG Q     L +P+ +PEA E++    E I  
Sbjct: 540 DRVIDINYYPSEQAAASNPRWRPIGLGSMGLQDVFFALRMPFDAPEAKELSTRIAEEIQL 599

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+  S ELA++ GA+ +F  +   +G    D  G+            T    W  +++R
Sbjct: 600 SALERSAELAEQFGAHPAFAETRAARGQLQHDLQGVEP----------TQTERWAAVRQR 649

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  VN+ LV ELK 
Sbjct: 650 IADHGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFMQVNTALVGELKS 709

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             LW EA+   LK  +GS+  I  +P++ +++  TA+E+    LIE A+ RQ ++DQ+QS
Sbjct: 710 LGLWTEAVREKLKADNGSVAGIADLPEETRRLFRTAWELPQKALIEMAAARQAYVDQSQS 769

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN-------- 924
           LNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT ++++T+ GV    +        
Sbjct: 770 LNLFMESPNIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVAGVRAGASWGAATGAP 829

Query: 925 ----------------AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                   + T    +  S  +   CE C+
Sbjct: 830 GASQPTAPGSPGVVGGLTASEPVRTFTDEEALACSLENPEACEACE 875


>gi|294660114|ref|XP_462554.2| DEHA2G23276p [Debaryomyces hansenii CBS767]
 gi|199434472|emb|CAG91065.2| DEHA2G23276p [Debaryomyces hansenii]
          Length = 861

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/799 (34%), Positives = 427/799 (53%), Gaps = 39/799 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA 201
            +KI        +F+  +L   +E     L    +S + ++++    + D +S  DL   
Sbjct: 6   VIKIKDKTEQYENFSKTKLLHFLENLAFELDTEYISLEEIVNKVIDGLPDLISVKDLLEL 65

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE---MQCLYPEYFCR 258
           L  S  T I   P+++ +  R     L++    T      +  +++       Y      
Sbjct: 66  LAESIATKIIYHPDHSILAGRVEAVNLQKMTDYTFSSNVIRLRNYKSNKTGRSYGVVSDE 125

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           Y +  ++ + +           L + +   RD    Y G++ L + Y L ++    E PQ
Sbjct: 126 YFKTVMEHKHV-----------LDSIIDSRRDLELTYFGIKTLQNSYLLKLDNVVSETPQ 174

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             F+RVA+G+   + +     +E Y L+S  +F+ ++PTLFNSGT +  LSSCFL  + D
Sbjct: 175 FMFLRVAIGIHGDDIDSV---IETYELMSQKYFIHASPTLFNSGTEYNYLSSCFLLAMED 231

Query: 379 D-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L ++A+++K SGG+G     +RG G++I  +NG S G++P L+V N+TA  
Sbjct: 232 DSIDGIYKTLHKSALISKASGGIGLHVHNIRGSGSYIASSNGTSSGLVPMLRVFNNTARY 291

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA   Y+E WH D+   LDL+KN G +  R  D+    WIPDLFM+RV Q+
Sbjct: 292 VDQGGNKRPGAFAIYIEPWHCDIISILDLKKNHGKEEMRARDLFYGLWIPDLFMERVKQD 351

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+LFSPD    L D YG  F+  YE YE        K  R I A  LWR +L    ET
Sbjct: 352 LDWSLFSPDITPGLSDCYGDAFKTLYEKYEES-----GKAIRTIKAQKLWRAILECQTET 406

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615
           G P++ FKD CN +S Q+++G + SSNLC EI   SS EETAVCNLGS+ L +   N+  
Sbjct: 407 GGPYMLFKDACNSKSNQRNLGTIKSSNLCCEIIEYSSPEETAVCNLGSLALPSFIKNSNE 466

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             +D+DKL +  +   + L+ +IDI  + IE AK SN  +R I +G+ G       L +P
Sbjct: 467 LEYDFDKLHTVTKVLAKNLNKIIDITKYPIESAKFSNMRNRPIAVGVQGLADLFLELRLP 526

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S +A  +  +  E I   A+  S+ELA + G Y +FKGS   +G+F  D         
Sbjct: 527 FDSNQAKVLNTQIFETIYHAAVEVSIELAIKDGPYDTFKGSPISEGLFQFDLWNHKPSQ- 585

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                       WDELK + KT+G+RNS  +A  PTA+ + I G ++  +P   N+Y + 
Sbjct: 586 --------LYSDWDELKLKAKTLGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYNRR 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            +SG+F VVN +L+ +L    +W+ +M + +   +GSI NI  IP +LK+++ T +EI  
Sbjct: 638 VLSGEFQVVNKYLMKDLIDLGIWNSSMKNKIILENGSIQNIPSIPKELKQLYKTVWEISQ 697

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
             +IE A+ R K+IDQ+QS+N++L +P+  KL   +  AW  GLKT  YYLR+++AT   
Sbjct: 698 KVIIELAADRGKFIDQSQSMNIHLQDPTFGKLTSSHFYAWEKGLKTGMYYLRTQAATRAI 757

Query: 913 KSTLKGVDGKLNAVPVTDP 931
           + T+   + +   V     
Sbjct: 758 QFTVDLAESRKLDVQPEAD 776


>gi|312066374|ref|XP_003136240.1| ribonucleoside-diphosphate reductase large subunit [Loa loa]
 gi|307768605|gb|EFO27839.1| ribonucleoside-diphosphate reductase large subunit [Loa loa]
          Length = 1038

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 256/831 (30%), Positives = 405/831 (48%), Gaps = 105/831 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   + +  ++   + + C GL    V    +  +    +Y G++  +L+    
Sbjct: 12  YVVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAA 71

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
             +  +I K P+YA + +R  +  L ++         +K      + LY     +     
Sbjct: 72  EIAADMITKHPDYATLASRIAVSNLHKKT--------EKLFSKVSKRLYNATHPKSGRHM 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++  +   L + + +ERDF + Y GL+ L   Y L ING   E PQ   MR
Sbjct: 124 PLISKNIFDIIQNNADILDSAIIHERDFCYTYFGLKTLERSYLLQINGELAERPQHMLMR 183

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+G+        + A+E YNL+S   F  +TPTLFNSGT  PQ+SSCFL T+  D + G
Sbjct: 184 VALGIHGD---NIEAALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFDDSIEG 240

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  L++ A+++K +GG+G +   +R  G+ I GTNG S G++P L+V N+ A       
Sbjct: 241 IFETLKKCALISKSAGGIGLNVHCIRATGSAIAGTNGVSNGLVPMLRVFNNAAR------ 294

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
                                   KN GD+  R  D+    W+PDLFM+RV  +  W+L 
Sbjct: 295 ------------------------KNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLM 330

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P E   L D +G+ FE  Y  YE      E +  +++ A  LW  +++   ETG P++ 
Sbjct: 331 CPAECPGLEDSWGEAFEKLYMQYEE-----EGRYRKQVPARKLWETIVSTQIETGMPYMV 385

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKL 621
           +KD CN ++ QQ++G +  SNLCTE+ L SS EE AVCNL SI L    +    FD+  L
Sbjct: 386 YKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALSRFVSSEMTFDFKML 445

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +  VR L+ VID N + + +A++SN  HR IG+G+ G   A  L+  P+ S +A +
Sbjct: 446 REITKVVVRNLNKVIDRNYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKARD 505

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +     E + + A+ AS ELA E+G Y S++ S     +   D  G+            T
Sbjct: 506 LNKRIFETMYYAALEASCELAMEQGPYESYERSP----ILQFDMWGVTP----------T 551

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W+ L+K++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y ++ +SG F V
Sbjct: 552 NQWDWETLRKKIAMYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQV 611

Query: 802 V----------------------------------------NSFLVNELKQRDLWDEAMI 821
                                                    N  L+N+L + DLWD+ M 
Sbjct: 612 KFHDTLLIRFERITSEITFLQSFLLIAFLCLEDYVISLKVFNMHLMNDLMRLDLWDDDMK 671

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881
            ++  + GSI NIERIP +++ ++ T +E+    +I+ A  R  +ID +QSLN+++  P+
Sbjct: 672 LEIIKNKGSIRNIERIPQEIRDLYKTVWEMSQRDIIDMAVDRGAFIDHSQSLNIFIARPN 731

Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
              +  ++   W  GLKT  YYLR+R A    + T+     K  A    D 
Sbjct: 732 YGNITSMHFYGWQKGLKTGMYYLRTRPAVDAVQFTVDKTRLKDYANANADD 782


>gi|190347674|gb|EDK39996.2| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/798 (32%), Positives = 406/798 (50%), Gaps = 43/798 (5%)

Query: 157 FNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP 214
           F+ KRL  +++     L    +    V+      +   ++  DL      S  +     P
Sbjct: 27  FDPKRLRSLLDTLSYELDIEHLDLDDVVDSVAAGLPATITVDDLLLLTAESLASRTTSYP 86

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  +  R  + K+++    +      K        L  +                  + 
Sbjct: 87  DYGVLAGRVEMTKIQKSAENSFSANIAKIAKIAPNTLSSQLVS---------------VA 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           + +   +   + + RD+   Y  ++ L   Y L  +    E PQ  FMRV++G+  ++  
Sbjct: 132 EKNAEKIDGAIDHRRDYELSYFAVKTLQKSYLLVGS----ETPQYMFMRVSLGIHGQD-- 185

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAML 393
               A+E Y  +S  +F+ ++PTLFNSGT +  LSSCFL  +  D + GI+  L E A++
Sbjct: 186 -VNSAIETYTYMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALI 244

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452
           +K SGG+G     +R  G+ I  ++G S G++P L+V N+TA  V+QG  KR GA   YL
Sbjct: 245 SKASGGIGLHVHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYL 304

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ E LDL+KN G +  R  D+  A WIPDLFM+RV  +  W+ FSPD+   L +
Sbjct: 305 EPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLEN 364

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EF+  YE+YE      +    + + A  LW  +L    ETG P++ +KD CN +S 
Sbjct: 365 CYGEEFKRLYESYEA-----KGLAMKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSN 419

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           Q+++G + SSNLC E+   SS +E AVCNLGS+ L     N+ FD   L    +  V  L
Sbjct: 420 QKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNL 479

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID+  + +E A+ SN  HR I +G+ G       L +P+ SP A E+  +  E I  
Sbjct: 480 NKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYH 539

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ ASVELA + G Y +F GS   +G+   D                     WDELK++
Sbjct: 540 AAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSD---------LYTDWDELKQK 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +LV +L +
Sbjct: 591 VVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTE 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            +LW++ M   +    GS+ NI+ IP  ++ +  T ++I    +I+ A  R K+IDQ+QS
Sbjct: 651 LNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDISQRTIIDMAVDRAKFIDQSQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN+++  P+  KL   +  AW  GLKT  YYLR++SA+   + T+ G+     A P+   
Sbjct: 711 LNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSSA--ATPLKRK 768

Query: 932 NSSTHSLGIPSSCTSDTE 949
               +    P +     E
Sbjct: 769 IDEVYESSFPGTGELTPE 786


>gi|150864273|ref|XP_001383025.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149385529|gb|ABN64996.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 891

 Score =  609 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 273/834 (32%), Positives = 421/834 (50%), Gaps = 36/834 (4%)

Query: 133 SHSKSDAPIAPKLKIMMDDGT---LISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYK 187
             S  D     K+     D +      F+ KRL   + +  + L    +    ++S    
Sbjct: 11  QSSDGDGNSDSKVNQHKSDDSFTKREDFDIKRLSRFLLKLTTNLDVKHLDLDSIVSTVEV 70

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            +   ++  +L   +  +  +     P+YA +  R    ++++ V T+      K  +H 
Sbjct: 71  GLPAKVTLDELYGLVSETLASRTIYHPDYALLAGRVAARRIQKHVSTSFSGAVIKLWNHR 130

Query: 248 MQCLYPEYF-CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                      +              ++     +  + ++ +RDF   Y  ++ L   Y 
Sbjct: 131 SSVTNNRSNGNKTSRTYSIVSESLYKIVMQHRHFFDSLIEKDRDFDLTYFAIKTLERSYL 190

Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           L IN    E PQ  F+RVA+G+     +     VE Y L+SS +F+ ++PTLFN+G+ + 
Sbjct: 191 LKINDEMAETPQYMFLRVAIGIHGNNLDDV---VETYELMSSRYFIHASPTLFNAGSEYN 247

Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            LSSCFL  + DD + GI+  L + A+++K SGG+G +   +R  G+ I  TNG S G++
Sbjct: 248 YLSSCFLVDMEDDSIDGIYKTLHKTALISKASGGIGLNVHNIRASGSLIASTNGTSSGLV 307

Query: 426 PFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           P L+V NDTA  V+QG  KR GA   Y+E WH D+   LD++KN G +  R  D+  A W
Sbjct: 308 PMLRVFNDTARYVDQGGNKRPGAFAIYIEPWHADIFSVLDMKKNHGKEELRARDLFFALW 367

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFM++V  +  W LFSPDE   L D YG EF   Y  YE      E +    + A  
Sbjct: 368 IPDLFMQKVKDDEDWCLFSPDEAPGLADCYGDEFVDLYNQYEA-----EGRARTVVKAHK 422

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +L    ETG P++ +KD CN +S Q+++G + SSNLC EI    SSEETAVCNLGS
Sbjct: 423 LWLAILESQTETGGPYMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYCSSEETAVCNLGS 482

Query: 605 INLLAHFANN----------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           + L A   +           +FD++KL S  +   R L+ VID+  + +E  K SN  HR
Sbjct: 483 LALPAFIKSVSIDNSDEEVLEFDFEKLHSITKVLTRNLNKVIDVTLYPVESTKVSNMKHR 542

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            I LG+ G       L +P++S EA ++  +  E I   A+ ASVELA   G Y+SF+GS
Sbjct: 543 PIALGVQGLADVFLELRLPFSSDEAKKLNIQIFETIYHAAVEASVELAMSEGPYNSFEGS 602

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              +G+   D                     WD LK+ VKT G+RNS  +A  PTA+ + 
Sbjct: 603 PASKGILQFDLWDHKPSELYN---------DWDSLKESVKTHGLRNSLLVAPMPTASTSQ 653

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G ++  +P   NLY +  ++G++ V N +LV +L    LW+ A+ + +   +GSI NI
Sbjct: 654 ILGYNECFEPYTSNLYTRRVLAGEYQVANKYLVKDLIDLGLWNSAVRNKIIVDNGSIQNI 713

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             IP +LK+++ T +EI    +I+ A+ R K+IDQ+QS+N++L  P+  KL   +   W 
Sbjct: 714 SSIPQELKELYKTVWEISQKVIIDMAADRGKFIDQSQSMNIHLQNPTFGKLTSCHFYGWQ 773

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            GLKT  YYLR+++A+   + T+   + +           S H        + +
Sbjct: 774 KGLKTGMYYLRTQAASRAIQFTVNNEEIENMDTAPGATIKSLHRKRYKQVDSVE 827


>gi|254584212|ref|XP_002497674.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
 gi|238940567|emb|CAR28741.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
          Length = 875

 Score =  608 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 281/806 (34%), Positives = 434/806 (53%), Gaps = 34/806 (4%)

Query: 156 SFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
            +N   +   + E   GL    +    ++ +    + D +    +      +  +L    
Sbjct: 16  EYNPPLMRQKLRELSFGLNLDYLDFDKIVQKISSGVPDDVEGWQVIRHAAETVASLTSIH 75

Query: 214 PNYAKVTARFLLEKLRREVLT-TVYKKPQKATH--------HEMQCLYPEYFCRYIEEGV 264
           P+++ + AR  +++L + +   T  +  ++                   +   R  ++GV
Sbjct: 76  PDHSILAARLEIDELHKSLRGITFTENLKQLRSSTRVTSEGDNRVPSKRQKVMRAPKKGV 135

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
            +    +  + ++   L + + +ERDF F Y G + L   Y +  N     E PQ  FMR
Sbjct: 136 ISEEFLQMALKYE-KKLNDAIVHERDFNFTYFGWKTLCQSYLIKKNADQIHETPQFLFMR 194

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382
           VA+ +           +E Y L+S  +F+ ++PTLFN+GT +  LSSCFL  +  D + G
Sbjct: 195 VALAIHGPFE-DIDSVIETYELMSRKYFIHASPTLFNAGTVNQYLSSCFLVGMKEDSIEG 253

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           IF  L++ A+++K SGG+G   + +R  GAH+ G+NG S G++P L+V N+TA  V+QG 
Sbjct: 254 IFKTLEDTALISKASGGIGIHVSNIRASGAHVSGSNGTSNGIVPMLRVFNNTARYVDQGG 313

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            KR GA C YLE WH DV +FL LRKN G D  R  D+  A WIPDLFMKRV  N  W+L
Sbjct: 314 NKRPGAYCIYLEPWHSDVFDFLQLRKNHGKDELRARDLFFALWIPDLFMKRVQCNGEWSL 373

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FSPDE   L D+YGKEFE  YE YE  A        +++ A  LW ++L    ETG P++
Sbjct: 374 FSPDEAPGLSDVYGKEFEELYEQYEATAL-----PMKRVKAQKLWSEILQAQVETGGPFM 428

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQF 616
            +KD CN++S Q+++G + SSNLC EI   SS +ETAVCNL S+ L           + F
Sbjct: 429 LYKDSCNLKSNQKNLGTIKSSNLCCEIVEYSSKDETAVCNLASVALPTFVVQVTNKGSIF 488

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ KL + ++T  R LD VID+  + I +A+ SN  +R   +G+ G      +L IPY S
Sbjct: 489 DFVKLHAVVKTITRNLDRVIDVCKYPIPQAQYSNLRNRPEAIGVQGLADVFLMLRIPYES 548

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA  +  +  E I   A+  S+ELA+E GAY +F+GS   QG+   D  GL  +  D L
Sbjct: 549 QEARILNTQIFETIYHAAVETSIELAEEYGAYETFQGSPASQGLLQFDLWGLNEDNYDFL 608

Query: 737 AMNRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                    W ELK R++   G+RNS  +   PTA+ + I G ++S +P   N+Y +  +
Sbjct: 609 Y------RDWGELKHRIQNGRGLRNSLLLGPMPTASTSQILGYTESFEPMTSNVYARRVL 662

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F  VN ++V+   Q  +W+E + + +   +GS+ NI+ +PD +KKI+ T +EI    
Sbjct: 663 SGEFINVNQYMVDHFCQLGIWNEKLKNRIIADNGSVQNIQGLPDWIKKIYRTVWEIPQRP 722

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI+ A  R  +IDQ+QSLNL++  P+  KL  ++  AW  GLKT  YYLR+++A++  + 
Sbjct: 723 LIDMARDRSPFIDQSQSLNLFMKTPTMGKLTSMHFHAWRHGLKTGMYYLRTQAASAAIQF 782

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGI 940
           T+   +    +V +   +       I
Sbjct: 783 TVNDENTLTGSVELNGSDEEESKTPI 808


>gi|282174153|ref|YP_003358255.1| ORF116 [Anguillid herpesvirus 1]
 gi|281308996|gb|ADA57879.1| ORF116 [Anguillid herpesvirus 1]
          Length = 833

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/812 (30%), Positives = 392/812 (48%), Gaps = 65/812 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200
               +    G    +++K++   +E    GL    V    +++ T   +YDG++  +L+ 
Sbjct: 2   DNFSVRKHSGRTEMWSTKKMLSKLESLSYGLNTDFVDLDRLVTATMDGLYDGITTKELDD 61

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            +  ++        +Y+ +  R ++  + +  +    +         M    P      +
Sbjct: 62  VMARTAAGFTSYHFDYSLLAGRIVVNSIHKYTVGNFLQGAVLL--QNMDETKPHVTDELV 119

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
               K               +   + Y RD+ F +  ++ L   Y L +N   +E PQ  
Sbjct: 120 AVARKYE-----------NQIQGAIDYSRDYTFNFFAIRTLERAYLLKVNERVMERPQHL 168

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379
           FMR+A+G+        +  +E Y  LS   F  ++PTLF++GT   +L+SC+L T+  D 
Sbjct: 169 FMRIAIGIHG---FDLESVLETYRCLSEKRFSHASPTLFHAGTNFAKLASCYLVTLADDS 225

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  LQE A +AK SGG+G   + VR  G+ I+ TNG + G++P L+V N     V+
Sbjct: 226 IAGIYSTLQECAQIAKCSGGIGAAISNVRAEGSAINSTNGTANGLVPMLRVFNAMTRMVD 285

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA+  +LE WH D+  +LDL+KN GDD  R  D+    WI DLFM+RV  +  
Sbjct: 286 QGGNKRPGAMAVWLEPWHADIAAWLDLKKNLGDDGIRARDLFYGLWISDLFMERVKDDQM 345

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P +   L D+YG +F   Y  YE Q         +++ A  LW  +L    E G 
Sbjct: 346 WSLMCPKKCPGLMDVYGSDFVALYTKYESQGM-----YVKQVEARELWTHILRSQMENGM 400

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615
           P++ +KD CN +S QQHVGVV   NLCTEI   S     AVCNL ++ L    A      
Sbjct: 401 PFMMYKDSCNRKSNQQHVGVVKCGNLCTEIVEVSEPHRPAVCNLAAVCLPTCVACECGIR 460

Query: 616 --------------------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                                     FD+ +L       V+ L+ VID + +  + A   
Sbjct: 461 QASRTEVASSASSAVQACEDPTCRKSFDFGELGRLTEVLVKNLNRVIDKSDYAFDGANHR 520

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N   R +G+G+ G      +L + +   EA  +  +  E + +HA++AS +LA+E   Y 
Sbjct: 521 NSQDRPLGIGVQGLADVFAMLGLAFDGTEAARLNVQIFETMYYHAMAASCKLAEEDQPYP 580

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           ++KGS   QG+F  D  G          +  ++   W  LK+RV+  G+RNS  +A  PT
Sbjct: 581 TYKGSPVSQGIFQFDMWG----------VKPSAMHDWTSLKRRVQKYGVRNSLLLAPMPT 630

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ A I G +++ +P   NL+ +  +SGDF ++N  LV EL +  +W E     L   +G
Sbjct: 631 ASTAQIFGNNEAFEPFTNNLFTRGVLSGDFQIINPHLVRELIRLGMWGEETRMRLMADNG 690

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI   E +P   + +  T +EI    +I  A+ R  +IDQ+QSLN+++ +P+  KL  ++
Sbjct: 691 SIRTWEDVPQHTRDVFKTVWEISQKTIINMAADRAPFIDQSQSLNIHMADPNVSKLSSMH 750

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
              W  GLKT  YYLRSR A +  + T+    
Sbjct: 751 MYGWQKGLKTGMYYLRSRPAVNAIQFTVDKTK 782


>gi|17158276|ref|NP_477694.1| wsv172 [Shrimp white spot syndrome virus]
 gi|6165659|gb|AAF04636.1|AF099142_4 large subunit of ribonucleotide reductase [shrimp white spot
           syndrome virus]
 gi|15021484|gb|AAK77761.1|AF369029_92 ORF92, putative ribonucleotide reductase large subunit (RR1)
           [shrimp white spot syndrome virus]
 gi|17016570|gb|AAL33176.1| wsv172 [shrimp white spot syndrome virus]
 gi|19481820|gb|AAL89096.1| WSSV228 [shrimp white spot syndrome virus]
          Length = 848

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/852 (30%), Positives = 418/852 (49%), Gaps = 60/852 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACS---------GLQDVSSKIVLSETYKNMYDGLSESD 197
           I   +GT    + +++   +E AC              ++ + + S     +   +S  +
Sbjct: 10  ISKRNGTKQEISLEKIIKRIENACLPVNQYVPKLDKNAINPQELASHIMDRLPATISFQE 69

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++  L   ++T I   P++ K+  RF+   + +                  Q L      
Sbjct: 70  MDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKNTKEWNS------FSATTQKLRHAIHP 123

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-----INGS 312
              +        +   +  +   L   + Y+ D+ F   GL+ L   Y +          
Sbjct: 124 GTGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKIGSPTDRKK 183

Query: 313 RI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           RI  E PQ   MRVA+G+   + +     +E Y+L+S  +F  ++PTLFN GT  PQLSS
Sbjct: 184 RILVERPQDMIMRVAVGIHGSDIKSV---IETYDLMSRHYFTHASPTLFNCGTVTPQLSS 240

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL  + DD + GI+  L+E A+++K +GGLG  +  +R  G+ I   +G   G++ FL+
Sbjct: 241 CFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTHPGLMAFLQ 300

Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           + N +   V+QG  KR+GA   Y+  WH+DV++F+D RKN G++  RT D+  A W+ DL
Sbjct: 301 IFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLFPAIWVSDL 360

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV     W+L  P E   L D++G+EF+  YE YE      E K    + A AL+ +
Sbjct: 361 FMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEA-----EGKGKEVVKARALFDQ 415

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           + +   ETG P++ FKD  N +S Q++VG++ SSNLCTEI   S SEETAVCNL SI + 
Sbjct: 416 INSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLASIAVN 475

Query: 609 AHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                          DY ++   ++   R LD VID+N + ++K + SN   R +GLG+ 
Sbjct: 476 KFVKYSPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPMGLGVQ 535

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
           G       L IP+ S EA  I     E I + A+ AS E+A+E+   Y  F+GS   +G+
Sbjct: 536 GLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGI 595

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  D      + RD +  N      W++L++ +   G+ NS  +A  PTA+ A I G S+
Sbjct: 596 FQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSE 654

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S +P   N+Y ++ +SG F VVN +++ EL +   W+      +    GSI  +  IP  
Sbjct: 655 SFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKS 714

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
            K++  T +EI+P   ++ A +R  ++DQAQSLNL+++EP   K+  +   AW  G+KT 
Sbjct: 715 TKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKTL 774

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIP 941
           YYLR++ A    + T+     +        P +                      +  + 
Sbjct: 775 YYLRTKGAARAVQFTVDKNVLQEVKKEAPSPVAAFSAPVREEEEEKKSSIVVPDPAAALL 834

Query: 942 SSCTSDTECEVC 953
            S  +   CE+C
Sbjct: 835 CSINNPGACEMC 846


>gi|14581686|gb|AAK69359.1|AF132669_1 ribonucleotide reductase large subunit RR1 [shrimp white spot
           syndrome virus]
          Length = 848

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/852 (30%), Positives = 418/852 (49%), Gaps = 60/852 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACS---------GLQDVSSKIVLSETYKNMYDGLSESD 197
           I   +GT    + +++   +E AC              ++ + + S     +   +S  +
Sbjct: 10  ISKRNGTKQEISLEKIIKRIENACLPVNQYVPKLDKNAINPQELASHIMDRLPATISFQE 69

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++  L   ++T I   P++ K+  RF+   + +                  Q L      
Sbjct: 70  MDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKNTKEWNS------FSATTQKLRHAIHP 123

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-----INGS 312
              +        +   +  +   L   + Y+ D+ F   GL+ L   Y +          
Sbjct: 124 GTGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKIGSPTDRKK 183

Query: 313 RI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           RI  E PQ   MRVA+G+   + +     +E Y+L+S  +F  ++PTLFN GT  PQLSS
Sbjct: 184 RILVERPQDMIMRVAVGIHGSDIKSV---IETYDLMSRHYFTHASPTLFNCGTVTPQLSS 240

Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           CFL  + DD + GI+  L+E A+++K +GGLG  +  +R  G+ I   +G   G++ FL+
Sbjct: 241 CFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTHPGLMAFLQ 300

Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           + N +   V+QG  KR+GA   Y+  WH+DV++F+D RKN G++  RT D+  A W+ DL
Sbjct: 301 IFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLLPAIWVSDL 360

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+RV     W+L  P E   L D++G+EF+  YE YE      E K    + A AL+ +
Sbjct: 361 FMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEA-----EGKGKEVVKARALFDQ 415

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           + +   ETG P++ FKD  N +S Q++VG++ SSNLCTEI   S SEETAVCNL SI + 
Sbjct: 416 INSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLASIAVN 475

Query: 609 AHFANN-------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                          DY ++   ++   R LD VID+N + ++K + SN   R +GLG+ 
Sbjct: 476 KFVKYFPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPMGLGVQ 535

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
           G       L IP+ S EA  I     E I + A+ AS E+A+E+   Y  F+GS   +G+
Sbjct: 536 GLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGI 595

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  D      + RD +  N      W++L++ +   G+ NS  +A  PTA+ A I G S+
Sbjct: 596 FQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSE 654

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S +P   N+Y ++ +SG F VVN +++ EL +   W+      +    GSI  +  IP  
Sbjct: 655 SFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKS 714

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
            K++  T +EI+P   ++ A +R  ++DQAQSLNL+++EP   K+  +   AW  G+KT 
Sbjct: 715 TKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKTL 774

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIP 941
           YYLR++ A    + T+     +        P +                      +  + 
Sbjct: 775 YYLRTKGAARAVQFTVDKNVLQEVKKEAPSPVAAFSAPVREEEEEKKSSIVVPDPAAALL 834

Query: 942 SSCTSDTECEVC 953
            S  +   CE+C
Sbjct: 835 CSINNPGACEMC 846


>gi|300706935|ref|XP_002995698.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
 gi|239604894|gb|EEQ82027.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
          Length = 738

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/784 (32%), Positives = 421/784 (53%), Gaps = 53/784 (6%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           LQ+V     + + Y    + +S  ++ T +  ++ +++   P Y K++AR L+  L    
Sbjct: 3   LQNVDKNYFIDKVYNGWCEDMSSFEMITFVSETAASMMTINPEYGKLSARILICHLHEIT 62

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
             T  +K            Y + +   I   +   ++       +   + + + Y +D+ 
Sbjct: 63  FNTFSEKII----------YLQKYRNIINPEIYEIVV------KNREIIDDIIDYTKDYD 106

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
             +  +  L   Y   +N   IE PQ  FMRVA+ +        ++  E Y+L+S+ +F 
Sbjct: 107 LTFFSITSLMKSYLFRVNDEVIERPQDIFMRVALQIHRD---NWEKVKETYDLMSNHYFT 163

Query: 353 CSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPTL+NS T   QL+SCFL   + D + GI+  L++ A+++K+SGG+G +   +R  G
Sbjct: 164 HATPTLYNSCTIRSQLASCFLLSPINDSIEGIYDTLKQCAVISKHSGGIGLNLHSIRCNG 223

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA-VCAYLETWHIDVEEFLDLRKNTG 470
           + +  T GKS+G+IP ++V N T   +NQGG R+ + +  YLE WH D+ +FLDLRKNTG
Sbjct: 224 SDLVSTGGKSRGIIPLIQVINSTKKYINQGGNRRSSSMAIYLEPWHKDIFDFLDLRKNTG 283

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +  R  D+ TA WI DLFM+RV +N  W+LF P+E   L D++G++F   Y  YER   
Sbjct: 284 SEDIRARDIFTALWINDLFMERVDKNEEWSLFCPNEAKGLDDVWGEDFNKLYTKYER--- 340

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               K    + A  LW+ ++    ETG P++ +KD CN  S QQ++G++ SSNLC EI  
Sbjct: 341 ---TKNRTVVKARKLWKAIIEAQIETGTPYMLYKDTCNRLSNQQNLGIIKSSNLCAEIIE 397

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            S   E AVCNL S+ L       +FD+++L+  ++   R L+N ID   + +E+ K+SN
Sbjct: 398 YSDKNEIAVCNLASVCLSRFVREGKFDFEELSKIVKVITRNLNNCIDSTFYPVEECKRSN 457

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A  L+  P+ S  A ++  +  E I + A+  SVELA+E G Y +
Sbjct: 458 FRHRPIGIGVQGLADAFVLMRYPFDSQNARDLNFKIFETIYYSALEESVELAKEYGPYET 517

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS   +G+F  +         ++          W+ L++++K  G+RNS  ++  PTA
Sbjct: 518 FAGSPLSKGIFHFELCKKKVPNLEK----------WNLLREKIKKHGVRNSLLVSPMPTA 567

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + I   ++  +P   N+Y +   +G+F +VN +L+ +L   +LW   M + +  ++GS
Sbjct: 568 STSQIFNNNECFEPFTSNIYTRRTHAGEFQIVNQYLLKDLINLNLWSHEMKNLIIEYEGS 627

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I NI+ IP D+K ++ TA+E+    +I+ A+ RQ +IDQ+QSLNL++ +P+  KL  ++ 
Sbjct: 628 IQNIKSIPQDIKDLYKTAWELKMKHVIDLAADRQLFIDQSQSLNLFVAQPTYSKLSSMHF 687

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            A+  GLKT  YYLR+R  TS  K T+                       + S   +D  
Sbjct: 688 YAFKSGLKTGMYYLRTRPITSAIKFTVD---------------QKLLEKTMSSINDNDEV 732

Query: 950 CEVC 953
           C+ C
Sbjct: 733 CDAC 736


>gi|155370864|ref|YP_001426398.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124184|gb|ABT16051.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 765

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/791 (32%), Positives = 405/791 (51%), Gaps = 55/791 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188
           ++ ++  DG+  + +  ++   +   C               +GL  V    +++    +
Sbjct: 8   RMNVIKRDGSTEAVSFDKIMTRISRLCWPENGKPTHKGSRAQNGLA-VDISRIVASICAS 66

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           + D ++   L+      + +L    P+Y  + AR  +  L+++   ++       T+ ++
Sbjct: 67  IVDNITTVQLDDLTADKAASLTTLNPDYGILAARIAISNLQKQTSDSIVD-----TYTKL 121

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           + L  + F   +                              F F+Y G   +   Y   
Sbjct: 122 EHLLSDEFMNLVRTYGDQYQGFIDYDRD--------------FDFDYFGFSTMQRLYLTK 167

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +    IE PQ  ++RVA+ L   + E+     E Y+ LS   F  ++PTLFN+G +   L
Sbjct: 168 VGSKIIERPQHTYLRVAIALWGSDIERV---KETYDALSRRKFTHASPTLFNAGFKKANL 224

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +SCFL    D L  IF  L + A L+KY GG+G   + +RG GA I GTNG+S G++P L
Sbjct: 225 ASCFLVHCNDSLSDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESDGIVPML 284

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++  R  ++  A W+ DL
Sbjct: 285 KVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDL 344

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  +A W+L  P E   L D+YGKE+E  Y  YE      E K  R + A  +W  
Sbjct: 345 FMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYE-----SEGKAKRVVKARDVWNT 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           M+T   ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC +GSI L 
Sbjct: 400 MVTTQIETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLK 459

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            +  N+ FD++ L   ++   + LD  ID+  + + +A+ SN   R +G+G+ G Q    
Sbjct: 460 NYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFF 519

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ S +A ++  E  E I F A+ AS EL+ E G + +F+GS   +G+      G+
Sbjct: 520 QLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGV 579

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +          + L W  L+ RVK  G+RNS   A+ PTA+ A ICG  ++ +P   N
Sbjct: 580 TPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAAEPITSN 628

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  ++G+F VVNS+LV EL  R  W E M + +  + GSI  +  I  D+K ++ T+
Sbjct: 629 IYSRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVKAVYKTS 688

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907
           +EI    +I+ A+ R  ++DQ QS+NL+L  P+ K +  +   AW  GLKT  YY+RS+ 
Sbjct: 689 WEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKP 748

Query: 908 ATSVEKSTLKG 918
           A +    T+  
Sbjct: 749 AANAIAVTVDE 759


>gi|322815075|gb|EFZ23824.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 731

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 265/747 (35%), Positives = 402/747 (53%), Gaps = 36/747 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           +A  L +   DG+L SF++ +L   +E    GL    V  KI+       ++D +S  +L
Sbjct: 2   LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +  ++   + K P+Y  +  R  +  L +    +V +            L+      
Sbjct: 62  DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLET--------FSILHKHKIHD 113

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-----FLHINGSR 313
                         ++      L   + Y+RD  FE+ G + L   Y             
Sbjct: 114 TGRAAPLLSDEVWEIVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGEREI 173

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            E PQ  F+RVA+G+  ++ E+     E Y+ +S  +F  +TPTLFN+GT  PQ+SSCFL
Sbjct: 174 AERPQQMFLRVALGIHGEDMERV---KETYDHMSLGYFTHATPTLFNAGTPFPQMSSCFL 230

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+  L++ A+++K +GG+G     +R  G++I GTNG+S G++P L+V N
Sbjct: 231 VAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLRVWN 290

Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +TA  V+QGG KRKGA   YLE WH D+  FL L+KNTG +  R  D+  A WIPDLFM+
Sbjct: 291 NTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFME 350

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV     WTL  P     L D YG +F+  YE YER     E +  + + A +LW  +L 
Sbjct: 351 RVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYER-----ENRGVKTVQAQSLWFAILE 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH- 610
           +  ETG P++ +KD CN +S Q++VGV+  SNLCTEI   +S +E AVCNL SI L    
Sbjct: 406 LQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFV 465

Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 +D+ +L    +   + L+ VID N + + ++++SN  +R IG+G+ G      L
Sbjct: 466 DKERKIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFIL 525

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + +P+   EA  + ++  E I + A+ ASVELA+  G Y+ F GS   QG    D     
Sbjct: 526 MRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQK 585

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                     R+ R  WD LKKR+   GMRNS  +A  PTA+ + I G ++  +P   N+
Sbjct: 586 P---------RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           YV+  +SG+F VVN +LV +L +R LW+E M + +  ++GS+ NI  IP+DLK+++   +
Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY 876
           EI    LIE A  R K+IDQ+QSLNL+
Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLF 723


>gi|155122463|gb|ABT14331.1| hypothetical protein MT325_M777L [Paramecium bursaria chlorella
           virus MT325]
          Length = 765

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/791 (31%), Positives = 400/791 (50%), Gaps = 55/791 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188
           ++ ++  +G+  + +  ++   +   C               +GL  V    +++    +
Sbjct: 8   RMNVIKRNGSSEAVSFDKIMTRISRLCWPENGKPTHRGSRAQNGLA-VDISRIVANICAS 66

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           + D ++   L+      + +L    P+Y  + AR  +  L+++   ++       T+ ++
Sbjct: 67  IVDNITTVQLDDLTADKAASLTTLNPDYGILAARIAISNLQKQTSDSIVD-----TYSKL 121

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
           + L  + F   +                                        +   Y   
Sbjct: 122 EHLLSDEFMNLVRTHGDQYQAFIDYDRDFDFDYFGF--------------ATMQRLYLTK 167

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           +    IE PQ  ++RVA+ L   + E+     E Y+ LS   F  ++PTLFN+G +   L
Sbjct: 168 VGSKIIERPQHTYLRVAIALWGSDIERV---KETYDALSRRKFTHASPTLFNAGFKKANL 224

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +SCFL    D L  IF  L + A L+KY GG+G   + +RG GA I GTNG+S G++P L
Sbjct: 225 ASCFLVHCNDSLTDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESDGIVPML 284

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + T+   NQGG+RKG+   YLE  H D+ +FL LR+N G++  R  ++  A W+ DL
Sbjct: 285 KVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDL 344

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  +A W+L  P E   L D+YGKE+E  Y  YE      E K  R + A  +W  
Sbjct: 345 FMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYE-----SEGKAKRVVKARDVWNT 399

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           M+T   ETG P++  KD  N ++ Q + G +  SNLC EI   +S EETAVC +GSI L 
Sbjct: 400 MVTTQMETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLK 459

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
            +  N+ FD++ L   ++   + LD  ID+  + + +A+ SN   R +G+G+ G Q    
Sbjct: 460 NYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFF 519

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ S +A ++  E  E I F A+ AS EL+ E G + +F+GS   +G+      G+
Sbjct: 520 QLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGV 579

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +          + L W  L+ RVK  G+RNS   A+ PTA+ A ICG  ++ +P   N
Sbjct: 580 TPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAAEPITSN 628

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  ++G+F VVNS+LV EL  R  W EAM + +  + GSI  +  I  D+K ++ T+
Sbjct: 629 IYSRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTS 688

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907
           +EI    +I+ A+ R  ++DQ QS+NL+L  P+ K +  +   AW  GLKT  YY RS+ 
Sbjct: 689 WEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKP 748

Query: 908 ATSVEKSTLKG 918
           A +    T+  
Sbjct: 749 AANAIAVTVDE 759


>gi|146414790|ref|XP_001483365.1| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 260/822 (31%), Positives = 403/822 (49%), Gaps = 61/822 (7%)

Query: 157 FNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP 214
           F+ KRL  +++     L    +    V+      +   ++  DL      S  +     P
Sbjct: 27  FDPKRLRSLLDTLSYELDIEHLDLDDVVDSVAAGLPATITVDDLLLLTAESLASRTTSYP 86

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +Y  +  R  + K+++           K        L  +                  + 
Sbjct: 87  DYGVLAGRVEMTKIQKLAENLFSANIAKIAKIAPNTLSSQLVS---------------VA 131

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
           + +   +   + + RD+   Y  ++ L   Y L  +    E PQ  FMRV++G+  ++  
Sbjct: 132 EKNAEKIDGAIDHRRDYELSYFAVKTLQKSYLLVGS----ETPQYMFMRVSLGIHGQD-- 185

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAML 393
               A+E Y  +S  +F+ ++PTLFNSGT +  LSSCFL  +  D + GI+  L E A++
Sbjct: 186 -VNSAIETYTYMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALI 244

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452
           +K SGG+G     +R  G+ I  ++G S G++P L+V N+TA  V+QG  KR GA   YL
Sbjct: 245 SKASGGIGLHVHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYL 304

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           E WH D+ E LDL+KN G +  R  D+  A WIPDLFM+RV  +  W+ FSPD+   L +
Sbjct: 305 EPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLEN 364

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
            YG+EF+  YE+YE      +    + + A  LW  +L    ETG P++ +KD CN +S 
Sbjct: 365 CYGEEFKRLYESYEA-----KGLAMKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSN 419

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           Q+++G + SSNLC E+   SS +E AVCNLGS+ L     N+ FD   L    +  V  L
Sbjct: 420 QKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNL 479

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           + VID+  + +E A+ SN  HR I +G+ G       L +P+ SP A E+  +  E I  
Sbjct: 480 NKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYH 539

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A+ ASVELA + G Y +F GS   +G+   D                     WDELK++
Sbjct: 540 AAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSD---------LYTDWDELKQK 590

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   GMRNS  +A  PTA+ + I G ++  +P   N+Y +  ++G+F VVN +LV +L +
Sbjct: 591 VVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTE 650

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
            +LW++ M   +    GS+ NI+ IP  ++ +  T ++I    +I+ A  R K+IDQ QS
Sbjct: 651 LNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDILQRTIIDMAVDRAKFIDQLQS 710

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LN+++  P+  KL   +  AW  GLKT  YYLR++SA+   + T+ G+      +     
Sbjct: 711 LNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSSAATPLKRKID 770

Query: 932 NSST-----------------HSLGIPSSCTSDTE---CEVC 953
                                       SC    +   C  C
Sbjct: 771 EVYELSFPGTGELTPESQGYSPGEEKRDSCNYTPDEIACSSC 812


>gi|255713718|ref|XP_002553141.1| KLTH0D09922p [Lachancea thermotolerans]
 gi|238934521|emb|CAR22703.1| KLTH0D09922p [Lachancea thermotolerans]
          Length = 867

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 272/796 (34%), Positives = 423/796 (53%), Gaps = 27/796 (3%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +   +G      S+ L   +++   GL  +D     V       +    + S +      
Sbjct: 7   VSDRNGEANKLTSQALAQSLKQLAGGLQIEDADFDAVSRRILDAVPPSATHSSVVQFGGE 66

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
               +    P++A + AR+ + +L +++    + +                  R+     
Sbjct: 67  VLAAMSTTHPDFANLAARWEISELHKKLQGLSFTENLALLQKLRSSSKAPTVKRHKTSTS 126

Query: 265 KARLLHESMMDFDLV-----YLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQ 318
                  S   +++       L   ++ +RDF F Y G + L   Y     N    E PQ
Sbjct: 127 HNDKNLISAAFYEMALRYQTTLDAAIQPDRDFDFSYFGWKTLSKSYLIKRKNEETHETPQ 186

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
             FMRVA+ +           +E Y+L+S   F+ ++PTLFN+GT +  LSSCFL  +  
Sbjct: 187 FLFMRVALAIHGP-RGDIDAVLETYDLMSRKFFIHASPTLFNAGTVNQYLSSCFLVAMIE 245

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L + AM++K SGG+G   + VRG GA+I G+NG S G++P L+V N+TA  
Sbjct: 246 DSIDGIYRTLHKTAMISKASGGVGVHVSNVRGTGAYISGSNGTSNGLVPMLRVFNNTARY 305

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QG  KR GA C YLE WH DV +FL LRKN G +  R  D+  A WIPDLFM+RV QN
Sbjct: 306 VDQGGNKRPGAFCIYLEPWHSDVLDFLQLRKNQGKEELRARDLFLALWIPDLFMERVEQN 365

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W LFSPDE   L + +G+EF+  YE YE+      +   +K+ A  LW ++L    ET
Sbjct: 366 GSWCLFSPDEAPGLQECFGEEFKKLYETYEK-----TLAPAKKMPAQKLWSEILQSQVET 420

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615
           G P++ +KD CN +S Q+++G + SSNLC EI   SS  ETAVCNL S+ L +     + 
Sbjct: 421 GGPFMLYKDSCNNKSNQKNLGTIKSSNLCCEIVQYSSPSETAVCNLASVALPSFVKLQRE 480

Query: 616 ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              FD++ L   ++   + LD+VIDI  + +E AK SN  +R I +G+ G   AL +L I
Sbjct: 481 QAIFDFESLHKIVKVLTKNLDSVIDICDYPVEDAKFSNEKNRPIAIGVQGLADALMILRI 540

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
           P+ S  A  +  +  E I   A+  S+E +++ G Y SF  S   +G F  D  GL  + 
Sbjct: 541 PFHSESARVLNKQIFETIYHAAVETSIERSKKLGPYPSFDNSPVSRGEFQFDLWGLNDDN 600

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            + L         W E++++VK  G+RNS  +   PTA+ + I G ++S +P   N+Y +
Sbjct: 601 YEFLF------SDWKEMREKVKQHGIRNSLLVGPMPTASTSQILGFTESFEPMTSNIYTR 654

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             +SG+FTV+N ++V++  +  +W+E + + +   +GSI  IE IP +LK+++ T +EI 
Sbjct: 655 RVLSGEFTVINKYMVDDFCRLGIWNEKLKNRIIEQNGSIQGIEGIPSNLKELYRTVWEIP 714

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ ++ R  +IDQ+QSLNL+L EP+  KL  ++   W  GLKT  YYLR+++A+  
Sbjct: 715 QRVMIDLSADRGPFIDQSQSLNLFLREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASGA 774

Query: 912 EKSTLKGVDGKLNAVP 927
            K T+   +    AV 
Sbjct: 775 IKFTINQENTLRGAVS 790


>gi|149238952|ref|XP_001525352.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450845|gb|EDK45101.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 862

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 271/781 (34%), Positives = 412/781 (52%), Gaps = 35/781 (4%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           GT    + + L  ++     GL    +  +  +      + D L+  +  T +  +    
Sbjct: 14  GTSHKISREGLLDLLRSLSKGLDATHLRLEEAIDAIMSGLPDTLTTKEFYTYVSETVAAR 73

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +   P+Y+ +  R   + L+ +V     +  ++           +Y  R  +        
Sbjct: 74  VIYHPDYSILAGRVEAKFLQLQVPYRFSENVERL---------KQYSPRKGKSFSPISED 124

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
              ++          +K +RD+   Y G++ L + Y L I+G   E PQ  F+RV++G+ 
Sbjct: 125 FYKVVMEHKDVFDKMIKSDRDYDLTYFGIKTLENSYLLRIDGEVAETPQQMFLRVSIGIH 184

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQ 388
              T       E YNL+S  +F+ + PTL+N+G++   LSSCFL  + DD + GI+  L 
Sbjct: 185 ---THSVSHVEETYNLMSQKYFIHALPTLYNAGSKFNYLSSCFLMAMKDDSIDGIYKTLH 241

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGA 447
           E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+TA  V+QGG KR GA
Sbjct: 242 ETALISKASGGVGIHVHDIRANGSYIASTNGLSNGLVPMLRVFNNTARFVDQGGGKRPGA 301

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YLE WH DV + LD+RKN G++  RT D+    WIPDLFM+RV  N  W+LFSPDE 
Sbjct: 302 FAIYLEPWHADVFDILDMRKNHGNEEHRTRDLFYGLWIPDLFMERVKTNGQWSLFSPDEA 361

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L D+YG +F+  YE YE+     E    R I+A  LW  +L    ETG P++ +KD C
Sbjct: 362 PGLSDVYGDDFKELYERYEK-----EKLATRTINAQKLWLAILESQTETGGPYMLYKDAC 416

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLAS 623
           N +S Q+++G + SSNLC EI   SS  ETAVCNL S+ L         + +FD+ KL  
Sbjct: 417 NRKSNQKNLGTIKSSNLCCEIIEYSSPTETAVCNLASLALPSFLEVSEDDIKFDFLKLHE 476

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             +   + L+ VID+  + +E AK SN  HR I LG+ G       L +P+ S  A  + 
Sbjct: 477 VTKVVTKNLNKVIDVTMYPVESAKNSNKKHRPIALGVQGLADLFLELRLPFDSSAAKNLN 536

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            +  E +   AI AS+EL+   G Y+SF+GS   +G    D          +        
Sbjct: 537 IQIFETVYHAAIEASMELSIVEGPYASFQGSPASKGKLQFDLWNHKPSDLYD-------- 588

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD LK +V   G+RNS  +A  PTA+ + I G ++  +P   NLY +  +SG+F VVN
Sbjct: 589 -DWDILKSKVMKYGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVN 647

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L+ +L    LW+ AM + L    GS+ NI+ +P +LK ++ T +E+    +I+ A+ R
Sbjct: 648 KYLIKDLIDLGLWNSAMRNKLMMDGGSVQNIDILPKELKTLYRTVWELKQKDIIDMAADR 707

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
            K+IDQ QS+N+YL  P+  KL   +  AW MGLKT  YYLR+++AT   + T+   +  
Sbjct: 708 AKFIDQLQSMNIYLQNPTIGKLTSCHFHAWEMGLKTGMYYLRTQAATRAIQFTIDANEAN 767

Query: 923 L 923
           L
Sbjct: 768 L 768


>gi|254567974|ref|XP_002491097.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|238030894|emb|CAY68817.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Pichia pastoris GS115]
 gi|328352376|emb|CCA38775.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris
           CBS 7435]
          Length = 774

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/812 (31%), Positives = 419/812 (51%), Gaps = 50/812 (6%)

Query: 150 DDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
                ISF+  RL+  + +   GL  + V   +V+ +    + + L   DL         
Sbjct: 3   KSKEAISFDEARLKRSLLKLSFGLNLKFVDIALVVEKVSLAIIENLHLQDLLNLTSEILA 62

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +L  +  +Y+ + AR L   LR+ +  + +   ++   H                     
Sbjct: 63  SLSTRHYDYSNLAARLLSNHLRKRLGDSFFANCERLAEHGFVD----------------- 105

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
               ++   +   L   +K ERDF F+Y G   L   Y L  +   +E PQ  FMRVA+G
Sbjct: 106 KGLLTIARSNSEQLDGSIKPERDFDFDYFGYMTLQSIYLLKKDDLILETPQFLFMRVALG 165

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGA 386
           +     E    A++ Y+L+S  +F+ ++PTLF++GT  P LSSCFL  + D D+  ++ +
Sbjct: 166 IHG---EDLSSAIQTYDLMSQGYFIHASPTLFHAGTPTPYLSSCFLMGLQDADVNSVYQS 222

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRK 445
           L + AM++  +GG+G +   +             ++G++P +KV N+TA  V QG  KR 
Sbjct: 223 LHKIAMISNAAGGIGINVHDIPAED-------ACNRGIVPLIKVLNETARYVQQGSNKRP 275

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
            A   YLE WH +V + L+LRKN G +  R  D+  A WIPDLFM++V +N  W LF+P 
Sbjct: 276 SAFAIYLEPWHEEVFDLLNLRKNHGKEEIRARDLFYALWIPDLFMEKVEKNEDWCLFNPL 335

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L+D+YG++F + Y  YE++         RKI A  LW  ++    ETG P++ +KD
Sbjct: 336 HAKGLNDVYGEQFNLLYAEYEKKGM-----YVRKIPAQQLWNAIVDAQIETGTPFMLYKD 390

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            CN +S Q ++G +  SNLC EI   SS ++ AVCNL SI L  +  + +FD++ L +++
Sbjct: 391 SCNRKSNQSNLGTIQCSNLCCEIVEYSSRDQIAVCNLASIGLPKYVVDGKFDFESLKNSV 450

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R     L+ VIDI+ + + +A  SN   R + +G+ G      LL IPY S EA  +  +
Sbjct: 451 RIVTENLNKVIDISKYPVPEASYSNDLTRPMAIGVQGLWDTFMLLKIPYDSEEAAALNSQ 510

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E I + A+  S+ +A++ G Y SF+GS   +G+  +D   +  E            L 
Sbjct: 511 IFETIYYSALETSMNIAKKDGPYKSFQGSPASKGLLQMDLWNVKEED---------LTLD 561

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L+  +   G+RNS  +   PTA+ + I G  +S +P   N Y +   SG++ VVN +
Sbjct: 562 WKSLRSDIVKHGLRNSLLVGPMPTASTSQILGFCESFEPLSYNFYTRRVSSGEYQVVNKY 621

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+++L    LW +++  ++  +DGSI  I+ IP ++K ++ T +EI     I  A+ R +
Sbjct: 622 LIDDLINLGLWTDSLRQEIIGNDGSIQEIDEIPQEVKSLYKTVWEISQRITINMAADRGR 681

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLN 924
           +IDQ+QS+NLYL +P+  KL  ++  AW  GLKT  YYLR+++A+S  K ++     K +
Sbjct: 682 FIDQSQSMNLYLAKPNRGKLTAMHFYAWKKGLKTGMYYLRTKAASSAIKFSIDISKRKRD 741

Query: 925 A---VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                P       + +L    SC  +  CE C
Sbjct: 742 GTYNTPTKRQAVQSEALETTPSCQLN-NCESC 772


>gi|297268642|ref|XP_002799730.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Macaca mulatta]
          Length = 711

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/665 (39%), Positives = 392/665 (58%), Gaps = 23/665 (3%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
               L+ L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F  
Sbjct: 63  TAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTH 119

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G+
Sbjct: 120 ASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 179

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG 
Sbjct: 180 YIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 239

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q   
Sbjct: 240 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ--- 296

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   
Sbjct: 297 --GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEY 354

Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN
Sbjct: 355 TSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSN 414

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +
Sbjct: 415 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYET 474

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           ++GS   +G+   D   +            T    W+ LK+ +   G+RNS  +A  PTA
Sbjct: 475 YEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTA 524

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GS
Sbjct: 525 STAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGS 584

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++ 
Sbjct: 585 IQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHF 644

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
             W  GLKT  YYLR+R A +  + TL          +   +     ++  +  S  +  
Sbjct: 645 YGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENRD 704

Query: 949 ECEVC 953
           EC +C
Sbjct: 705 ECLMC 709



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNY-----AKVTAR---FLLEK---LRREVLTTVYKKPQKATHHEMQCL 251
             ++ TL   E +Y      KV  R    L+     + +E +    +     +       
Sbjct: 61  AETAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHA 120

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287
            P  F         +     SM D  +  + + LK 
Sbjct: 121 SPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQ 156


>gi|50310227|ref|XP_455133.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644269|emb|CAG97840.1| KLLA0F01188p [Kluyveromyces lactis]
          Length = 855

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/799 (33%), Positives = 419/799 (52%), Gaps = 29/799 (3%)

Query: 154 LISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSE-SDLETALIFSSRTLI 210
             +FN  +L+  ++     L  + +    ++ +    + +  +E S   + +  +     
Sbjct: 15  KETFNKDKLKKFLQTLTFSLNAEYIELDTLVEKILVGIPNEPTERSKFVSYVAETVAGST 74

Query: 211 EKEPNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              P+Y+ + AR  + +L R +   T  +   K      +        R I   +   L+
Sbjct: 75  SAHPDYSILAARVEIRELHRIIGDATFTENLAKLRKISREVTEDATKRRKITRDLSKNLI 134

Query: 270 HESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVA 325
            +    + L     +   +   RD+ F Y G + L   Y +  N     E PQ  FMRVA
Sbjct: 135 SDEFYQYALKFKDKIDQAIDKSRDYNFTYFGWKTLCKSYLMKRNNEQTHETPQFMFMRVA 194

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384
           + +           +E + L+S  +F+ ++PTL NSGT +  LSSCFL  + DD + GI+
Sbjct: 195 LAIHGPFD-DIDSVLETFELMSQKYFIHASPTLCNSGTVNQYLSSCFLVGMEDDSIDGIY 253

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GK 443
             L + A+++K SGG+G   + +R  GA+I G+NG S G++P L+V N+TA  V+QG  K
Sbjct: 254 KTLHKTALISKASGGVGIHVSNIRANGAYISGSNGTSNGLVPMLRVFNNTARYVDQGGNK 313

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA C YLE WH D+ +FL LRKN G +  R  D+  A WIPDLFMKRV  N  W++FS
Sbjct: 314 RPGAFCIYLEPWHADIIDFLQLRKNHGKEEMRARDLFYALWIPDLFMKRVENNEDWSIFS 373

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           PDE   L D YG EF+  YE YE+     E+   +K+ A  +W ++L    ETG P++ +
Sbjct: 374 PDEAPGLTDCYGDEFDKLYERYEK-----ELIPRKKMKAQQIWSEILQSQTETGVPFMLY 428

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDY 618
           KD CN +S Q+++GV+ SSNLC EI   SS EE AVCNL S+ L  +          FD+
Sbjct: 429 KDACNKKSNQKNLGVIKSSNLCCEIVEYSSPEEVAVCNLASVALPTYVNLSSDGPPVFDF 488

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL   ++  V+ LD  ID+  + + +A+  N  +R + +G+ G      L   P+ S +
Sbjct: 489 VKLHHVVKVLVKNLDRTIDVGKYPVPEARNGNIRNRPLAIGVQGLADTFMLCRTPFESVD 548

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +  +  E I   AI AS ELA+  G Y SF GS   +G    D   L  +    L  
Sbjct: 549 AATLNKQIFETIYHAAIEASTELAELFGHYESFPGSPASEGQLQFDLWSLNKDNYKFLF- 607

Query: 739 NRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                  WD LK R+    G+RNS  +   PTA+ + I G ++S +P   N+Y +  +SG
Sbjct: 608 -----DDWDSLKSRITKGKGLRNSLLVGPMPTASTSQILGFTESFEPMTSNIYSRRVLSG 662

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +FT++N ++V++  Q  +W+E + + +   +GSI  IE IP+++K ++ T +E     +I
Sbjct: 663 EFTIINQYMVDDFCQLGIWNEKLKNRILRDNGSIQTIEGIPEEVKNLYKTVWETSQRKMI 722

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + +S R  +IDQ+QSLNLYL EP+  KL  ++   W  GLKT  YYLR+++A+   + TL
Sbjct: 723 DLSSDRAPFIDQSQSLNLYLREPTMGKLTAMHFYTWKKGLKTGMYYLRTQAASRAIQFTL 782

Query: 917 KGVDGKLNAVPVTDPNSST 935
              +  L+ V     +S  
Sbjct: 783 NDENTLLDKVTTKVKDSRP 801


>gi|19074701|ref|NP_586207.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
 gi|51701818|sp|Q8SR37|RIR1_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|19069343|emb|CAD25811.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 768

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 248/787 (31%), Positives = 418/787 (53%), Gaps = 40/787 (5%)

Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                    +   +E     L+   V    ++        + ++  +       ++ ++I
Sbjct: 11  KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            K P Y ++++R ++  +    + +  +K +          Y +     + E +   +L 
Sbjct: 71  TKHPEYGQISSRIIVSYIHEITMDSFVEKIK----------YIQKHRGMVSEEMYGIIL- 119

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
                     +   + YE DF F Y G+  L   Y + +    IE PQ  FMRVA+ +  
Sbjct: 120 -----EHGETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIH- 173

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQE 389
                 ++  E YNLLS  +F  +TPTL+NS  ++PQL+SCFL T   D + G++  + +
Sbjct: 174 --KTDFEKVREVYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQ 231

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAV 448
            A++ KYSGG+G +   +R  G+ +  T G+S G+IP ++V N T   +NQG +R+ G++
Sbjct: 232 AAIITKYSGGIGLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSI 291

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             +LE WH+++ +FL+LRKNTG +  R  D+ TA WI DLFM+RV  N  W+LF P +  
Sbjct: 292 AIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAV 351

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L D++G+EF   Y  YE+   R        + A  LW+ ++    ETG P++ +KD CN
Sbjct: 352 GLSDVWGEEFNALYCKYEKTISRT------VVPAQKLWKAIIEAQIETGTPYMCYKDACN 405

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
             S QQH+G + SSNLC EI   SS EET+VCNL SI L     +  FD++     ++  
Sbjct: 406 RLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKIL 465

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
              L+ VID N + +E+A++SN  +R IG+G+ G      +L + + S  A  +  +  E
Sbjct: 466 TVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFE 525

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            + + A+ AS ELA++ G + S++GS   +G+F  +  G  A          +    W+ 
Sbjct: 526 AMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKA----------SGNWDWEG 575

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++R++  G+RNS  +A+ PTA  + I G +++ +P   N+Y +   +G+F +VN  LVN
Sbjct: 576 LRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVN 635

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L +  LW   M + +  ++GSI NI  IP ++++I+ TA+EI    +I+ A+ RQ ++D
Sbjct: 636 DLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVD 695

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q+QSLN+++ +P+  +L  ++   +  GLKT  YYLR+R  TS  K T+     +     
Sbjct: 696 QSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755

Query: 928 VTDPNSS 934
           + D +  
Sbjct: 756 MNDTDDP 762


>gi|20070048|ref|NP_613252.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|20043442|gb|AAM09277.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|33331880|gb|AAQ11188.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-A]
          Length = 761

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/820 (31%), Positives = 426/820 (51%), Gaps = 70/820 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +  +L   +   C  L    V  + V  +  K++ D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSPSKLHNRIHRLCHDLNSQFVHPRAVSLKVIKSLSDHTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K  +Y  +  R L+  + + V  +  K  Q+   H +     E     I+ 
Sbjct: 61  ASVAATLTYKHYDYDMLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS--DELLLVTIKH 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                             +  ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 119 S---------------KIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           R+A+G+   + +    A++ Y  LS+  +  ++PT+F +GT  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDDIDN---AIKSYKFLSTKMYTHASPTMFAAGTPTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    VNQG
Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVNQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FM+RV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMRRVQENGRWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E  +L++ +G EFE  Y++YE      + +   ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPELNNTFGDEFEYWYKHYE-----DKGQFRDQMPAVTLMRTIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N  FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIINGTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            S ++  V  L+ +ID N + +E AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HSVVKHVVISLNKIIDRNFYPVEAAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS++LA +   YS+F GS   QG+   D    +           T
Sbjct: 516 LNKQISETVYHAALDASLKLASDSEPYSTFAGSKASQGILQYDLWNAIP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKMNIQKHGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL----- 856
           VN +LV++L   +L+  +M   +  + GSI +I+ IPD++KK++ T +E    W      
Sbjct: 626 VNRYLVDDLIALNLYTSSMRKRIMANRGSIASIDEIPDNIKKLYMTIWE---CWHNNGKF 682

Query: 857 -IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
            I+ A+ R  +IDQ+QS N+Y+ +P+  K+  ++   W  GLKT  YY R+  A + ++ 
Sbjct: 683 MIDMAADRGAFIDQSQSFNVYMADPTLAKMASVHMYGWQRGLKTGMYYFRTLPAANSQQF 742

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T+                           CT +++C  CQ
Sbjct: 743 TVAPNLE----------------------CTKNSDCASCQ 760


>gi|215401394|ref|YP_002332698.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
 gi|198448894|gb|ACH88684.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
          Length = 761

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 264/817 (32%), Positives = 424/817 (51%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L    V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              +  L  K  +Y  +  R L+  + + V  +  K  Q+   H +     E     I+ 
Sbjct: 61  ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS--DELLSVTIKH 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                             +  ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 119 S---------------KIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           R+A+G+   +      A++ Y  LS   +  ++PT+F +GT  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDD---IDSAIKSYKFLSRKMYTHASPTMFAAGTLTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + A+++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    V+QG
Sbjct: 221 GIYNTLNDCAIISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FMKRV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D YG +FE  Y++YE +    E     ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRNIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N+ FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + ++  V  L+ +ID N + IE AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HTVVKHVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS ELA     YS+F GS   +G+   D    +           T
Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKMNIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L + +L+  +M   +  + GSI +I +IPD+LKK++ T +EI   +  ++IE
Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+  P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTVS 745

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                     CT +++C  CQ
Sbjct: 746 PNLE----------------------CTKNSDCASCQ 760


>gi|118197505|ref|YP_874319.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV]
 gi|37039662|gb|AAQ88175.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV]
          Length = 760

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/794 (31%), Positives = 409/794 (51%), Gaps = 43/794 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
              +   D     F+ K++   ++     L    +  + ++++  K +   +S S L   
Sbjct: 1   MFSVTKRDNAKQCFDQKKIVKTLQNLSVDLNKNLIDCEALVAQLKKTLVSNVSTSQLCVL 60

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM--QCLYPEYFCRY 259
           L   S ++      YA +  R ++    ++V            +  +     Y       
Sbjct: 61  LARESASMAYIHDEYAMLAGRLMVIDNHKQVSDDYAVVVDNLYNQNLVSAQFYKSAIA-- 118

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
                            ++  +   L Y  D+ ++Y G + L + Y   I G   E  Q 
Sbjct: 119 -----------------NMHTINATLNYNLDYDYKYFGFKTLENGYLKTIEGKVAERIQH 161

Query: 320 FFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
            +MRVA+ +   +T+       E YNL++   +  ++PTLF SG+ + QL+SCFL  +  
Sbjct: 162 MYMRVALTIHGNDTDDCIENVFETYNLMAHKMYTHASPTLFASGSCYAQLASCFLLNIKE 221

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L++ A+++K+ GG+G     VR  G+ I  TNG + G+   L+V N+    
Sbjct: 222 DSIVGIYETLRDCALISKFGGGIGLSVHNVRARGSFIESTNGTANGLEAMLRVYNNAVRH 281

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+QGGKRKGA+  Y+E WH D+ +FL+L++N G + R+  D+  A W+PDLFMKRV  + 
Sbjct: 282 VDQGGKRKGAMAIYVEPWHADIYDFLELKRNMGAEDRKARDLLYALWVPDLFMKRVEADG 341

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+L  P E   L  ++G EFE  Y  YE+       K  R+I A  L+R ++    ETG
Sbjct: 342 MWSLMCPRESPLLDTVHGSEFEQLYVAYEKC-----GKFVRQIKARDLFRTIVETQVETG 396

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--Q 615
            P++ +KD CN++S Q+H+G + +SNLC EI   S   E+AVCNL SI +      +  +
Sbjct: 397 TPYMMYKDACNMKSNQKHLGTIKNSNLCAEIVEYSDKNESAVCNLASICVNQFVDIDVGE 456

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           ++++ L    +  V+ L+ +IDIN + +  A+KSN  HR IG+G+ G      +L +PY 
Sbjct: 457 YNFEMLKYVTKIVVKNLNKIIDINYYPLLSAQKSNRKHRPIGVGIQGLADTFAMLRMPYE 516

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S +A  +  +  E I F A+ AS ELA+  G + S+  S    G+   D           
Sbjct: 517 SDQAKVLNTKIAETIYFGALEASCELAKAYGVHDSYFSSPASLGILQYDLWNHTP----- 571

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                TS   W +LKK +K  G+RNS C+A  PTAT A I G ++S +P   N+YV+  +
Sbjct: 572 -----TSMWDWTQLKKDIKQHGLRNSLCVAYMPTATTAQILGNNESFEPFTNNIYVRRVL 626

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +GDF V+N +L ++L + +L++E M + +  ++GS+ NIE IP  +++++ T +E+    
Sbjct: 627 AGDFQVINKYLTDDLIKLNLYNEQMRNKIIANNGSVQNIEEIPKHVRELYKTVWEMKVKN 686

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           LI  A+ R  +IDQ+QS N++L +P+   L  I+   W  GLKT  YYLR++ A    K 
Sbjct: 687 LIGMAADRGPFIDQSQSFNIFLSQPTYALLTTIHMHTWKSGLKTGMYYLRTKPAADAIKF 746

Query: 915 TLKGVDGKLNAVPV 928
           T+       NA   
Sbjct: 747 TVDKSQIVCNACSS 760


>gi|22549569|ref|NP_689342.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-B]
 gi|22476748|gb|AAM95154.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-B]
          Length = 761

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 264/817 (32%), Positives = 424/817 (51%), Gaps = 64/817 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L    V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              +  L  K  +Y  +  R L+  + + V  +  K  Q+   H +     E     I+ 
Sbjct: 61  ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS--DELLSVTIKH 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                             +  ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 119 S---------------KIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           R+A+G+   +      A++ Y  LS   +  ++PT+F +G+  PQ+SSCFL T+  D + 
Sbjct: 164 RIALGIFGDD---IDSAIKSYKFLSRKMYTHASPTMFAAGSLTPQMSSCFLLTMESDSIR 220

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L+V N+    V+QG
Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           GKRKGA   Y+E WH D+ + L +R+N G +  +  D+  A W+PD+FMKRV +N  W+L
Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P+E   L+D YG +FE  Y++YE +    E     ++ AV L R ++ +  ETG P++
Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRNIIEIQAETGTPYM 395

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
            +KD CN +S Q + G++  SNLC EI    + +ETAVCNL SI +  +  N+ FD+  L
Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + ++  V  L+ +ID N + IE AKKSN  HR IG+G+ G   A  +L IPY S  AV 
Sbjct: 456 HTVVKHVVDSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E +   A+ AS ELA     YS+F GS   +G+   D    +           T
Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S   W +LK  ++  G+RNS  +A  PTAT A I   ++S +P + NL+++  +SG+F V
Sbjct: 566 SLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858
           VN +LV++L + +L+  +M   +  + GSI +I +IPD+LKK++ T +EI   +  ++IE
Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS N+Y+  P+  K+  ++   W  GLKT  YY R+  A + ++ T+ 
Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTVS 745

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                     CT +++C  CQ
Sbjct: 746 PNLE----------------------CTKNSDCASCQ 760


>gi|86261680|emb|CAC17629.2| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces jumonjinensis]
          Length = 811

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 301/802 (37%), Positives = 434/802 (54%), Gaps = 44/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +  + G   ++L      ++  LI ++P Y+++ A
Sbjct: 45  LLRTLTDLTADLPDTDPGRVAAAALRGRHAGSDAAELRGLATDAAAGLISEDPAYSRLAA 104

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +  E                        F   +  G    L+ +    F     
Sbjct: 105 RLLTRTIADEAEGQGAVS----------------FSASVAVGFAEGLIADRTAAFVTLHA 148

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ LY RY L        IE PQ F +RVA GLA  ++ + 
Sbjct: 149 ARLDALIDPAADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSTRA 208

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 209 LDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLS 268

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ VR  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 269 KHAGGIGLSYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 328

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 329 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFSPSDVPELVDLW 388

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G +F+ AY   E           + + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 389 GDDFDTAYRRAEAAGLA-----RKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 443

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VHSSNLCTEI   +   ETAVCNLGS+NL A    +  D+++L +T+RTAV  L
Sbjct: 444 ALPGRTVHSSNLCTEILEVTDDAETAVCNLGSVNLAAFVTQDDIDWERLDATVRTAVTFL 503

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN+  R +GLG MG Q     L +P+ SP A  ++    E I  
Sbjct: 504 DRVVDINFYPTEQAGRSNNRWRPVGLGAMGLQDVFFQLKLPFDSPAARTLSTRIAERIML 563

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   ++  +    GV   D         D           W+ L++R
Sbjct: 564 AAYEASADLAERHGPLPAWNETRTAHGVLHPDHYNTTPHWPDR----------WNALRER 613

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +   G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV ELK 
Sbjct: 614 IAATGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVQELKN 673

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+  +GSI N  ++P D+++++ TA+EI    LI+ A+ R  ++DQ+QS
Sbjct: 674 LGVWDATTREALRDANGSIQNFTQVPADVRELYRTAWEIPQRGLIDMAAARTPYLDQSQS 733

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  G+KTTYYLRSR AT + ++      G    VP     
Sbjct: 734 LNLFLETPTIGKLSSMYAYAWKQGIKTTYYLRSRPATRIARAASNTNAGATVPVPA---- 789

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
            +T    +  S  +   CE CQ
Sbjct: 790 QTTPEDAVACSLENPESCEACQ 811


>gi|239982207|ref|ZP_04704731.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces albus J1074]
 gi|291454053|ref|ZP_06593443.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
 gi|291357002|gb|EFE83904.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
          Length = 791

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 298/826 (36%), Positives = 440/826 (53%), Gaps = 51/826 (6%)

Query: 145 LKIMMDDGTLISFNSKRLE-------MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           + I   D +     ++ ++         + +  + L D     V +   +       E++
Sbjct: 1   MTIAPADPSTADVRAEEIQGPGGALLRTLTDLTADLPDTDPGRVAAAALRGRNAASDEAE 60

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L +    ++  LI ++P Y+++ AR L   +  E                        F 
Sbjct: 61  LRSLATEAAAGLISEDPAYSRLAARLLTRTIAEEAAGQGVTT----------------FT 104

Query: 258 RYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313
             +  G +  L+ +    F       L   +    D  F Y GL+ ++ RY L    +R 
Sbjct: 105 ESVATGHREGLIADRTAAFVTAHAERLDALVDPAADDRFGYFGLRTVHSRYLLRHPHTRQ 164

Query: 314 -IEMPQAFFMRVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            IE PQ F +RVA GLA  ++ +        Y L+S+  ++ S+PTLFNSGTRHPQ+SSC
Sbjct: 165 VIETPQHFMLRVACGLAEDDSARALDEVASLYRLMSALSYLPSSPTLFNSGTRHPQMSSC 224

Query: 372 FLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           +L   P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFL  
Sbjct: 225 YLLDSPKDELESIYDRYHQVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLNT 284

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + +  AVNQGG+RKGA   YLETWH DVEEFL+LR NTG++ RRTH++N A+WIPD FM
Sbjct: 285 LDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFM 344

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +A W+LFSP +V +L DL+G  F+ AY   E +         R I A  L+ +M+
Sbjct: 345 RRVDADADWSLFSPSDVPELTDLWGDAFDAAYRAAEARGLA-----RRTIPARELYGRMM 399

Query: 551 TMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
             L +TG+ W+TFKD  N  + Q       VHSSNLCTEI   +   ETAVCNLGS+NL 
Sbjct: 400 RTLAQTGNGWMTFKDASNRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLG 459

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           A       D+++L   +RTAV  LD V+DIN +  E+A++SN   R +GLG MG Q    
Sbjct: 460 AFVDGGAIDWERLDEAVRTAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFF 519

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ SPEA  ++    E I   A   S +LA++ G   ++  +   QGV   D    
Sbjct: 520 QLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPDHY-- 577

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                     +      W+ L+ RV   GMRN+  +AIAPTATIA+I GV + I+P   N
Sbjct: 578 --------DTDLAWPERWEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSN 629

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+ +  +SG+F  VNS+LV +LK+  +WD      L+   GS+     IP++L+ ++ TA
Sbjct: 630 LFKRETLSGEFLQVNSYLVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTA 689

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +E+    LI+ A+ R  ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR A
Sbjct: 690 WELPQRGLIDMAAARTPFLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKTTYYLRSRPA 749

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T +     +   G   A       ++  +  I  S  +   CE CQ
Sbjct: 750 TRI----ARAAGGSAPATATVPAQAAPDAEAIACSLENPESCEACQ 791


>gi|260945435|ref|XP_002617015.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
 gi|238848869|gb|EEQ38333.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
          Length = 878

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 279/804 (34%), Positives = 425/804 (52%), Gaps = 34/804 (4%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK-IVLSETYKN-MYDGLSESDLETALIF 204
           +   +G+   F   RL   ++E    L   SS+  +  +  +N +   L+ + L   +  
Sbjct: 5   VYEINGSN-PFQIGRLRKTLDELNRELDISSSELELSMKAIENSLPASLTVNQLLELVAE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +    + + P++A +  R    +++R V++       +  +        +     + +  
Sbjct: 64  TLAQRVVQNPDFALLAGRVEAYRVQRLVVSPFSTNFSRLENGSKTESKIKMDLGLVSKD- 122

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                    +  +  YL   ++ ERD  F Y G++ L   YFL I+    E PQ  F+RV
Sbjct: 123 -----AAEFVARNSDYLDKLVRPERDMNFTYFGMRTLCKSYFLQIDNVVAETPQYLFLRV 177

Query: 325 AMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           A+GL  K  +    +R  E Y+L+S  + + S+PTLF++GT +  LSSCFL  +  D + 
Sbjct: 178 AIGLHGKLDDKNALQRVSEIYDLMSEKYLIFSSPTLFSAGTNNNFLSSCFLMGIKEDSID 237

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L   A+++K SGGLG     +R  G+ I  +NG S G++P LKV N+TA  V+QG
Sbjct: 238 GIFKTLHSAALISKGSGGLGIHVHNIRSNGSAISSSNGTSNGLVPMLKVFNNTARYVDQG 297

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   Y+E WH D+ E L+LRKN G D  R  D+  A WIPDLFMKRV  N  W+
Sbjct: 298 GNKRPGAFAIYIEPWHGDIMEVLELRKNHGPDELRARDLFFALWIPDLFMKRVKNNGKWS 357

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +   L D+YG+EFE  Y+ YE +           I A  LW  +L    ETG P+
Sbjct: 358 LFSPSKAPGLSDVYGEEFESLYQKYEEEDLA-----CTTIEARKLWMHILQAQTETGMPF 412

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615
           + +KD CN +S Q ++G + SSNLC EI   SS EETAVCNL S+ L      N+     
Sbjct: 413 MLYKDACNRKSNQMNLGTIKSSNLCCEIVEYSSPEETAVCNLASLGLPTFVTANENGNVA 472

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ KL    +   R LD VID+  + I+ AK SN  HR I +G+ G       L +P+ 
Sbjct: 473 FDFKKLHKVTKILARSLDRVIDVTKYPIKSAKVSNLKHRPIAIGVQGLADTFLELRLPFD 532

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EA  +  +  E I   AI +S+EL++E+G Y SF+GS   +G    D      +  D 
Sbjct: 533 SAEAATLNSQIFETIYHAAIESSMELSKEKGYYESFEGSPASKGKLQFDLWNYKPDFFD- 591

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WDELK++VK  G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +
Sbjct: 592 ---------DWDELKEQVKKYGLRNSLLVAAMPTASTSQILGFNECFEPFTSNIYNRRVL 642

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F VVN +LV +L+   +W++A+   +  ++GS+ NI+ IP  LKK++ T +EI    
Sbjct: 643 SGEFQVVNKYLVKDLRALGIWNKAVKDMIIMNNGSVQNIDIIPQKLKKLYKTVWEISQKH 702

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914
           ++  A+ R ++IDQ+QS+N++L  P+   L   +  AW  GLKT  YYLR+++A    + 
Sbjct: 703 IVRLAAERGRFIDQSQSMNIHLMNPTFGTLTSCHFFAWEQGLKTGMYYLRTQAAARAIQF 762

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSL 938
           T+   + +     +  P  ST   
Sbjct: 763 TVDKQEIEAKLKSMVVPEVSTLPK 786


>gi|302542645|ref|ZP_07294987.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460263|gb|EFL23356.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 804

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 302/802 (37%), Positives = 441/802 (54%), Gaps = 32/802 (3%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +  + G  E++L +    ++  LI +EP Y+K+ A
Sbjct: 26  LLRTLTGLTADLPATDPGKVAAAALRGRHPGSDEAELRSLATEAAAGLIGEEPEYSKLAA 85

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           +    +   + E           A  +       D   +
Sbjct: 86  RLLTRAIADEAAGQGAD----SFSASVAVGHREGLIA----DSTAEFVTAHTARLDA-LV 136

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EKR 338
              L    D  F Y GL+ L+ RY L        IE PQ F +RVA GLA   +E+    
Sbjct: 137 DRALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALDD 196

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
             E Y + S+  ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 197 VAELYRMTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHA 256

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C YLETWH 
Sbjct: 257 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHA 316

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  +  W+LFSP +  +L DL+G+E
Sbjct: 317 DIEEFLELRDNTGEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFSPVDAPELVDLWGEE 376

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-- 575
           F+ AY   E      E +  +++ A  L+ +M+  L +TG+ W+TFKD  N  + Q    
Sbjct: 377 FDAAYRKAEA-----EGRALKQVPARQLYSRMMRTLAQTGNGWMTFKDAANRTANQTAEA 431

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDN 634
             VVHSSNLCTEI   +   ETAVCNLGS+NL      + + D+++L  T+RTAV  LD 
Sbjct: 432 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLSAHLGEDGEMDWERLDRTVRTAVTFLDR 491

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+DIN +  E+A  SN   R +GLGLMG Q     L +P+ SPEA  ++    E I   A
Sbjct: 492 VVDINFYPTEEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQALSTRISERIMLAA 551

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS +LA+  G + ++  +   +GV   D                     W+ L+ R+ 
Sbjct: 552 YEASCDLAERHGPHPAWAETRTARGVLHPDH---------YTGAQAAWPERWEALRTRMA 602

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           T GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LVN+LK+  
Sbjct: 603 TTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNNYLVNDLKKLG 662

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +WD      L+  +GS+ ++  +P D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLN
Sbjct: 663 VWDTQTRDALREANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAAARTPYLDQSQSLN 722

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           L++  P+  KL  +Y  AW  G+KTTYYLRSR AT + +S   G       VP   P   
Sbjct: 723 LFMAAPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGAATATTPVPAPVPAQQ 782

Query: 935 THSLGIPSSCT--SDTECEVCQ 954
           T       +C+  +   CE CQ
Sbjct: 783 TPDEADAVACSLENPESCEACQ 804


>gi|296217190|ref|XP_002754897.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Callithrix jacchus]
          Length = 711

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/665 (39%), Positives = 390/665 (58%), Gaps = 23/665 (3%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
               L+ L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F  
Sbjct: 63  TAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTH 119

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G+
Sbjct: 120 ASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 179

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG 
Sbjct: 180 YIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 239

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q   
Sbjct: 240 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR-- 297

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   
Sbjct: 298 ---RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEY 354

Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN
Sbjct: 355 TSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSN 414

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E G Y +
Sbjct: 415 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYET 474

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           ++GS   +G+   D   +            T    W  LK+++   G+RNS  +A  PTA
Sbjct: 475 YEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTA 524

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GS
Sbjct: 525 STAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGS 584

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I +I  IPDDLK+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  KL  ++ 
Sbjct: 585 IQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHF 644

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
             W  GLKT  YYLR+R A +  + TL          V   +     ++  +  S  +  
Sbjct: 645 YGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMMCSLENRD 704

Query: 949 ECEVC 953
           EC +C
Sbjct: 705 ECLMC 709



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNY-----AKVTAR---FLLEK---LRREVLTTVYKKPQKATHHEMQCL 251
             ++ TL   E +Y      KV  R    L+     + +E +    +     +       
Sbjct: 61  AETAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHA 120

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287
            P  F         +     SM D  +  + + LK 
Sbjct: 121 SPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQ 156


>gi|303391084|ref|XP_003073772.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302920|gb|ADM12412.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 768

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/806 (31%), Positives = 426/806 (52%), Gaps = 55/806 (6%)

Query: 153 TLISFNSKRLEMIVEEACS--GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                    +   +EE  +   LQ V+   ++ +      + ++  ++      ++ ++I
Sbjct: 11  KSEKLKIDMVRGQIEEYTNLLKLQHVNVDELMEKIASGWCEDMTRKEIVDYCSETAASMI 70

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            K P Y  +++R ++  +    + +  +K +          Y + +   I E +   ++ 
Sbjct: 71  TKHPEYGWISSRIIVSYIHDITMDSFVEKIK----------YIQKYQGTISEEMYKIIV- 119

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
                 +   + + + YE+DF F Y G+  L   Y + +    +E PQ  FMR A+ +  
Sbjct: 120 -----ENAEIIDSIIDYEKDFLFNYFGILTLMKSYLIKVGEEIVERPQDVFMRTALQVH- 173

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQE 389
                  +  E Y +LS  +F  +TPTL+NS  +  QL+SCFL T   D + G++  + +
Sbjct: 174 --KSDFGKVKETYEMLSRHYFTHATPTLYNSCLKEAQLASCFLITPREDSIEGVYHMINQ 231

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAV 448
            A++ KYSGG+G +   +R  G+ +  T GKS G+IP ++V N T   +NQG +R+ G++
Sbjct: 232 TAIITKYSGGIGLNLHGIRSKGSPLKRTGGKSNGIIPLIQVLNATKRYINQGAERRPGSI 291

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YLE WH+++ +FLDLRKNTG +  R  D+  A WI DLFM+RV  N  W+LF P +  
Sbjct: 292 AIYLEPWHMEIFDFLDLRKNTGPEEFRARDIFIALWINDLFMERVKNNEEWSLFCPSQAV 351

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            L++ +G+EF   Y  YE+   R        + A  LW+ ++    ETG P++ +KD CN
Sbjct: 352 GLNETWGEEFNALYCKYEKTISRT------VVPAQKLWKAIIEAQIETGTPYMCYKDACN 405

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
             S QQH+G + SSNLC EI   SS EET+VCNLGSI+L     N +FD++ L   +R  
Sbjct: 406 RLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLGSISLPMFVKNKKFDFESLKDVVRIL 465

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
              L+ VID N + +E++K+SN  HR IG+G+ G      +L +P+ S EA  +  +  E
Sbjct: 466 TINLNKVIDFNYYPVEESKRSNMKHRPIGIGVQGLADLFAILRLPFDSDEARNLNKDIFE 525

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            + + A+  S +LA++ G + S++GS   +G+F  +  G  A          ++   W+ 
Sbjct: 526 TMYYSALETSCKLAEKEGPFESYEGSPISKGIFHFELAGKKA----------SNNWDWEG 575

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++R+K  G RNS  +A+ PTA  + I G +++ +P   N+Y +   +G+F +VN  L+N
Sbjct: 576 LRERIKKYGTRNSLLIALMPTAGTSQIFGNNETFEPFISNIYTRRTHAGEFQIVNKHLIN 635

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +L +  LW   M + +  ++GSI NI  IP  ++ I+ TA+EI    +I+ A+ RQ ++D
Sbjct: 636 DLSELGLWSYEMKNLIIENEGSIQNITTIPKKIRDIYKTAWEIKMKAVIDLAADRQVFVD 695

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           Q+QSLN+++ +P+  +L  ++   +  GLKT  YYLR+R  TS  K T+     +     
Sbjct: 696 QSQSLNVFVAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953
           + D                D  C +C
Sbjct: 756 MNDT---------------DEPCSMC 766


>gi|297192179|ref|ZP_06909577.1| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151244|gb|EDY64084.2| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 800

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 302/802 (37%), Positives = 438/802 (54%), Gaps = 49/802 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +    G   ++L +    ++  LI ++P Y+++ A
Sbjct: 39  LLRTLTDLTADLPDTDPGKVAAAALRGRNAGSDAAELHSLATEAAAGLISEDPAYSRLAA 98

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +  E                        F   +  G +  L+ +    F     
Sbjct: 99  RLLTRTIAEEAAGQGASS----------------FTASVATGHREGLIADRTAAFVALHA 142

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ LY RY L        IE PQ F +RVA GLA  ++ + 
Sbjct: 143 ARLDALIDLGADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSPRA 202

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
            +     Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+G   + A L+
Sbjct: 203 LEEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYGRYHQVARLS 262

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 263 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 322

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DL+
Sbjct: 323 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPVDVPELVDLW 382

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G++F+ AY   E           R +SA  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 383 GEDFDAAYRRAEAAGLA-----RRTVSARDLYGRMMRTLAQTGNGWMTFKDASNRTANQT 437

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                VVHSSNLCTEI   +   ETAVCNLGS+NL A  + +  D+++L +T+RTAV  L
Sbjct: 438 AEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGDGIDWERLDATVRTAVTFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I  
Sbjct: 498 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAEARALSTRIAERIML 557

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   ++  +   +GV   D                     W+ L+ R
Sbjct: 558 AAYEASCDLAERNGPLPAWAETRTARGVLHPDHYDTT----------LNWPERWEALRAR 607

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++LK+
Sbjct: 608 VAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKR 667

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+   GS+     +P++++ ++ TA+EI    LI+ A+ R  ++DQ+QS
Sbjct: 668 LGVWDAQTREALREASGSVQGFTWVPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQSQS 727

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +          +  +  V  P 
Sbjct: 728 LNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI---------ARAASAAVPVPA 778

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
             T    +  S  +   CE CQ
Sbjct: 779 QVTPEDAVACSLENPESCEACQ 800


>gi|300707604|ref|XP_002996003.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
 gi|239605258|gb|EEQ82332.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
          Length = 800

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 248/797 (31%), Positives = 412/797 (51%), Gaps = 45/797 (5%)

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
            + +  + +  S    +    +  +    + D ++  +  +    ++ ++  K  +Y + 
Sbjct: 44  NKFKKYISDLDSRFIAIDEYFL--KIESGLCDDITVEEFISFAAETADSMTTKHYDYGRF 101

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           +A+ L+E L+   L + + K      ++    Y E F   + +              +  
Sbjct: 102 SAKILMEYLKENTLDSFFAKVD--YIYKNGDFYSEKFYNIVLD--------------NKK 145

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
           +L   + Y +D ++ Y  +  L   Y L ++G  IE PQ   +RVA+ L     E     
Sbjct: 146 FLDELVDYSKDDSWTYFAILTLKRAYLLTLDGQTIERPQDMLLRVAVQLHGDNLENV--- 202

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSG 398
            E Y LLS+  +   +PT+FNSG++  QL+SCFL T + + + G+F  ++    ++K  G
Sbjct: 203 KETYELLSNNMYTHGSPTIFNSGSKKSQLASCFLLTPIEETVEGLFETVKRCVQISKSGG 262

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHI 457
           G+  D   +   G  I  T G S+G+IP+++V N +   + Q G +R G    YLE WH 
Sbjct: 263 GVALDLHDMAAKGTSIRKTGGISKGIIPYIQVLNWSLKYIGQAGSRRSGCPAIYLEPWHK 322

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +FLDLRK+ G D  R  D+ T  WI DLFMKRV  N  W+LF P  V  L + YGKE
Sbjct: 323 DIFDFLDLRKSIGKDELRARDVFTGMWINDLFMKRVEANEDWSLFCPKSVPGLSNAYGKE 382

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           FE  Y  YE++ D         + A  +W+ ++    ETG P++ +KD  N  S Q+++G
Sbjct: 383 FEDMYLEYEKKVDCV------VVPAQKVWKAIIESQIETGTPYMLYKDTINNLSNQKNIG 436

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +  SNLCTEI   +S +E AVCNL SI L     N +FD++   S ++   +  + VID
Sbjct: 437 TIRCSNLCTEIVQYTSPDEVAVCNLASICLPKFVINGEFDFNLFKSVVKIVTKNANIVID 496

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + +++A+KSN  HR IGLG+ G      +L +PY S  A ++  E  E + F A+ +
Sbjct: 497 CNFYPLKEAEKSNKKHRPIGLGVQGLADVFLMLRLPYESEGARKLNKEIFETLYFGALES 556

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S E A++ G Y S+ GS   +G+F  +              + T R  W+EL+K++   G
Sbjct: 557 SCEEAEKYGPYESYNGSPISKGIFHWEMAN----------SSTTGRWNWEELRKKILKYG 606

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS  +A  PTA  + I   +++ +P   N+Y +    G+F +VN +L+N+L + ++W 
Sbjct: 607 VRNSLLIAPMPTAGTSQIFNNNEAFEPFTSNIYTRRTACGEFQMVNRYLMNDLIKLNMWS 666

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             + + +   +GSI NI  IP+++K+++ T +EI    +I+ A+ RQ ++DQ QSLNL++
Sbjct: 667 PEIKNYIVEQEGSIQNISGIPEEIKELYKTVWEIKMKCVIDLAADRQAFVDQTQSLNLFV 726

Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            +P+   L  ++   W  GLKT  YYLR+R  TS  K T+      L+ +   + N +T+
Sbjct: 727 AKPTYPILSSMHFYGWKRGLKTGMYYLRTRPITSAIKFTVD-----LDMLKKVEKNEATN 781

Query: 937 SLGIPSSCTSDTECEVC 953
                +       CE C
Sbjct: 782 EELKENEINKSDICESC 798


>gi|294631327|ref|ZP_06709887.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
 gi|292834660|gb|EFF93009.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
          Length = 798

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 302/832 (36%), Positives = 440/832 (52%), Gaps = 46/832 (5%)

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           +   +     A    ++    T        L   + E  + L D     V +   +    
Sbjct: 4   EGEPQVTIAPADPASVVDRLETDGP--GAALLRTLTELTADLPDADPGRVAAAALRGRSA 61

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
              E++L      +S  LI ++P Y+++ AR L   +R E  +    +            
Sbjct: 62  RADEAELRELATEASAGLISEDPAYSRLAARLLTLTIRAEAASQGVTR------------ 109

Query: 252 YPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
               F   +  G +  L+ +   +F       L   +    D  F Y GL+ L+ RY L 
Sbjct: 110 ----FTESVAVGHREGLIADRTAEFVRLHAERLDAAVDPAADDRFGYFGLRTLHSRYLLR 165

Query: 309 I--NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
                  IE PQ F +RVA GLA              Y L+S   ++ S+PTLFNSGTRH
Sbjct: 166 HPITRKVIETPQHFMLRVASGLAQDATDHAVDEVTALYGLMSRLDYLPSSPTLFNSGTRH 225

Query: 366 PQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           PQ+SSC+L     D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G+
Sbjct: 226 PQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGI 285

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PFLK  + +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D RRTH++N A+W
Sbjct: 286 VPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHW 345

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           +PD FM+RV  +  W+LFSP +V +L DL+G EF+ AY   E +         + + A  
Sbjct: 346 VPDEFMRRVNADGQWSLFSPSDVPELVDLWGAEFDAAYRAAEERGLA-----RKTMPARE 400

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNL 602
           L+ +M+  L +TG+ W+TFKD  N  + Q      V+HSSNLCTEI   +   ETAVCNL
Sbjct: 401 LYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHVIHSSNLCTEILEVTDDGETAVCNL 460

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+NL A   +   D+++L  T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG
Sbjct: 461 GSVNLGAFVRDGDIDWERLDETVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMG 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
            Q     L +P+ S  A  ++    E I   A  AS +LA+  G   +++ +   +GV  
Sbjct: 521 LQDVFFKLRLPFDSAGARALSTRIAERIMLAAYEASADLAERHGPLPAWEKTRAARGVLH 580

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D             ++ T    W  L++R+  +GMRNS  +AIAPTATIA+I GV + I
Sbjct: 581 PDHY----------DVSLTWPERWTALRERIAAVGMRNSLLLAIAPTATIASIAGVYECI 630

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   NL+ +  +SG+F  VNS+LVN+LK   +WD      L+  +GS+ +   IP D++
Sbjct: 631 EPQVSNLFKRETLSGEFLQVNSYLVNDLKALGVWDARTREALRDSNGSVQDFAWIPADVR 690

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902
            ++ TA+EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYY
Sbjct: 691 ALYRTAWEIPQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYY 750

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           LRSR AT +     +   G+  A        +     +  S  +   CE CQ
Sbjct: 751 LRSRPATRI----ARAAQGRTPAEAALPAQQTADPDAVACSLENPESCEACQ 798


>gi|311977696|ref|YP_003986816.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
 gi|81990393|sp|Q7T6Y8|RIR1_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|55664860|gb|AAQ09572.2| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204750|gb|ADO18551.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
          Length = 881

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/849 (29%), Positives = 418/849 (49%), Gaps = 48/849 (5%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYK 187
            A+  S     +  +   +  +G++    S+ +   VE+    ++   +    +    + 
Sbjct: 54  KAKKSSNILLEVPKETIYLDHNGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFP 113

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            +    +  D++  +I ++  ++    +Y K+    L+  L         +  +K  +++
Sbjct: 114 KLKSINTIKDIDNQIISTASEMVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNK 173

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
            +           +          + +   +  +   ++Y+RD+     G + L   Y  
Sbjct: 174 SESN---------KNAPIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFRTLEKSYLK 224

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            IN   +E PQ  FMRVA+ L  +      R  E Y  LS  +F  +TPTLFN+GT H Q
Sbjct: 225 RINKKIVERPQHLFMRVAITLHYR-KNDLDRIFETYKYLSKGYFTHATPTLFNAGTTHEQ 283

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCFL  + D L  I    +E A+++K++GG+G   T +R  GA+I  T G++ G+   
Sbjct: 284 LSSCFLLGIGDSLEEISECWKECALISKHAGGIGIHMTNIRVEGAYIASTQGEAGGL-RV 342

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           L + ND +   NQGGKR G+   ++E WH D+  FLDL+KNTG +  R  D+     I D
Sbjct: 343 LTIFNDISRYANQGGKRPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMIND 402

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +FM+RV ++  W+L  P +  +L + YG EF   Y  YE      E    ++I A+ LW 
Sbjct: 403 IFMERVYKDDVWSLMCPSQCPNLLNKYGDEFTKEYLKYE-----SEGIYLKQIRAIDLWF 457

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K++    ETG P++ FKD  N +S Q ++GVV+ SNLC EI   S     +VCNL SI L
Sbjct: 458 KIMESQIETGVPYVMFKDAINDKSNQINIGVVNGSNLCCEIVEVSDKNNFSVCNLSSICL 517

Query: 608 LAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                       F+Y KL    R   R L+N+IDIN + ++K + +N   R IG+G+ G 
Sbjct: 518 PRFVKIIDEVPTFNYQKLFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGL 577

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
                +   P+ S  A ++  +  E I + A++ S +LA+E G Y +++GS   QG F  
Sbjct: 578 ADVFAMFKTPFDSEIARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQF 637

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D                +    W+ L++ +   G+RNS      PTA+ + I G ++ I+
Sbjct: 638 DLWNFDKSQL-------SGMWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIE 690

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P  +N+Y +S M+G++ V+N  L+ +L +  +W+  M+  +KY+ GS+ NI  IPD++K 
Sbjct: 691 PYTENIYSRSTMAGEYFVINKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKA 750

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902
           I+ T +EI    +IE A+ R  ++DQ QS+NLY+D+PS  +L+     AW  GLKT  YY
Sbjct: 751 IYRTVWEIPQKSIIEMAADRAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYY 810

Query: 903 LRSRSATSVEKSTLK-----------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT--- 948
           LRS+ A+S  +  +            G+  + +   +TD  ++ +       C       
Sbjct: 811 LRSKPASSANQFGIDIDKIKEIESKNGIKKQEDTFDLTDLTNTINQQVSGMVCRFVPAHL 870

Query: 949 ----ECEVC 953
               EC  C
Sbjct: 871 RKPGECLSC 879


>gi|29829568|ref|NP_824202.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           avermitilis MA-4680]
 gi|29606676|dbj|BAC70737.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptomyces avermitilis MA-4680]
          Length = 793

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 305/802 (38%), Positives = 433/802 (53%), Gaps = 44/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 27  LLRTLTDLTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAA 86

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +  E  +                     F   I  G +  L+ +   DF     
Sbjct: 87  RLLTISIAEEAASQGVTS----------------FSASITVGHREGLVADRTADFVRLHT 130

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ L+ RY L        IE PQ F +RVA GLA  +T   
Sbjct: 131 ARLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRRVIETPQHFMLRVASGLAEDDTSHA 190

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 191 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLS 250

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 251 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +N  W+LFSP +V +L DL+
Sbjct: 311 WHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNENGVWSLFSPADVPELVDLW 370

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+ AY   E           + I A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 371 GDEFDAAYRKAEEAGLA-----KKTIPARDLYGRMMRTLAQTGNGWMTFKDAANRTANQT 425

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                VVHSSNLCTEI   +   ETAVCNLGS+NL A       D+++L +T+RTAV  L
Sbjct: 426 AEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGRDIDWERLDATVRTAVTFL 485

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I  
Sbjct: 486 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEAQALSTRIAERIML 545

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   +++ +   +GV   D             +  T    W  L++R
Sbjct: 546 AAYEASADLAERNGPLPAWEKTRTARGVLHPDH----------FDVELTWPERWAALRER 595

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+ELKQ
Sbjct: 596 IAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKQ 655

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+   GS+     +P D++ ++ TA+EI    LI+ A+ R  ++DQAQS
Sbjct: 656 LGVWDAQTREALRESGGSVQGFTWVPQDVRDLYRTAWEIPQRGLIDMAAARTPFLDQAQS 715

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +     +    +          
Sbjct: 716 LNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRI----ARAAQAQAQPEKTIPVQ 771

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
             +    +  S  +   CE CQ
Sbjct: 772 QVSEPDAVACSLENPESCEACQ 793


>gi|295836583|ref|ZP_06823516.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
 gi|197697283|gb|EDY44216.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
          Length = 790

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 300/810 (37%), Positives = 433/810 (53%), Gaps = 43/810 (5%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
                   L   + E  + L D     V +   +       E++L      ++  LI ++
Sbjct: 15  EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y+++ AR L   +  E                        F   +  G +  L+ +  
Sbjct: 75  PAYSRLAARLLAIGIVAEAAGQGAS----------------GFAASVAVGHREGLIGDRT 118

Query: 274 MDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGL 328
            +F       L   +  E D  F Y GL+ LY RY L        IE PQ F +RVA GL
Sbjct: 119 AEFVATHAARLDALIDPEGDDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVAAGL 178

Query: 329 ALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386
           A  ++          Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+  
Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKG
Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +  W+LFSP +
Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFSPAD 358

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V +L DL+G+EFE AY   E      +    + + A  L+ +M+  L +TG  W+TFKD 
Sbjct: 359 VPELTDLWGEEFEAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDH 413

Query: 567 CNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            N  + Q      VVHSSNLCTEI   +   ETAVCNLGSINL A   N + D+++L  T
Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVENGEIDWERLDET 473

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTAV  LD V+DIN +   +A  SN   R +GLG MG Q     L +P+ S  A  ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTGQAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAAAKAVST 533

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I   A  AS +LA++ G   +++ +   +GV   D             + RT   
Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDH----------FDVERTWPE 583

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+ R+   GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN 
Sbjct: 584 RWEALRARIAKTGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK+  +WD      L+  +GS+     IP+D++ ++ TA+E+    LI+ A+ R 
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERT 703

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT +             
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGSSAAA 760

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + P+    +   +  I  S  +   CE CQ
Sbjct: 761 SAPIPVQQAVPDADAIACSLENPESCEACQ 790


>gi|239929011|ref|ZP_04685964.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           ghanaensis ATCC 14672]
 gi|291437352|ref|ZP_06576742.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340247|gb|EFE67203.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
          Length = 793

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 299/804 (37%), Positives = 440/804 (54%), Gaps = 46/804 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 25  LLRTLTELTADLPDADPGRVAAAALRGRSARADETELRELATEAAAGLISEDPAYSRLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 85  RLLAIGIRAEAASQGVTS----------------FTGSVATGHREGLIADRTAAFVRLHA 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ L+ RY L        +E PQ F +RVA GLA  ++ + 
Sbjct: 129 DRLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRKVVETPQHFLLRVAAGLAEDDSVRS 188

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 189 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 249 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 309 WHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFSPADVPELVDLW 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+  Y   E      +    + + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 369 GEEFDAVYRAAEE-----KGLARKTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQT 423

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVR 630
                V+HSSNLCTEI   +   ETAVCNLGS+NL A         D+++L  T+RTAV 
Sbjct: 424 ATPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDRTVRTAVT 483

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 484 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEARTLSTRIAERI 543

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS +LA+++G   +++ +   +GV   D             ++ T    W  L+
Sbjct: 544 MLAAYEASADLAEDKGPLPAWEKTRTARGVLHPDHY----------DVDLTWPERWVALR 593

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+ + G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++L
Sbjct: 594 GRIASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVSDL 653

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WDE     L+   GS+     IPDD+++++ TA+EI    LI++A+ R  ++DQA
Sbjct: 654 KRLGVWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAARTPFLDQA 713

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT +     +    +  A     
Sbjct: 714 QSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI----ARAAQAQPQAQTTVP 769

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
               T    +  S  +   CE CQ
Sbjct: 770 VQQPTPDEAVACSLENPESCEACQ 793


>gi|328884924|emb|CCA58163.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Streptomyces venezuelae ATCC 10712]
          Length = 792

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 296/802 (36%), Positives = 435/802 (54%), Gaps = 43/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 25  LLRTLTDLTADLPDTDPGKVAAAALRGRSAAADEAELRELATEAAAGLIAEDPAYSRLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +  E                        F   +  G +  L+ +   +F     
Sbjct: 85  RLLTVTIADEAAGQG----------------AFSFSASVAVGHREGLIADRTAEFVALHA 128

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ LY RY L        IE PQ F +RVA GLA  ++ + 
Sbjct: 129 DRLDATIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLRVACGLAEDDSVRA 188

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L     D+L  I+    + A L+
Sbjct: 189 LDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLS 248

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 249 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 308

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DL+
Sbjct: 309 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLW 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+ AY   E           + + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 369 GEEFDAAYRKAEAAGLA-----RKTMPARDLYGRMMRTLAQTGNGWMTFKDASNRTANQT 423

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VHSSNLCTEI   +   ETAVCNLGS+NL A    +  D+++L +T+RTAV  L
Sbjct: 424 AEPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGSDIDWERLDATVRTAVTFL 483

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I  
Sbjct: 484 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRIAERIML 543

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   +++ +   +GV   D             +       W  L++R
Sbjct: 544 AAYEASADLAERNGPLPAWEKTRTARGVLHPDHY----------DVELNWPERWAALRER 593

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+ELK+
Sbjct: 594 IAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKK 653

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+  +GS+     +P ++++++ TA+EI    LI+ A+ R  ++DQ+QS
Sbjct: 654 LGVWDAQTREALRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQS 713

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +             A  +    
Sbjct: 714 LNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIA---RAAQAAAPAAATIPVQQ 770

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           ++  +  +  S  +   CE CQ
Sbjct: 771 ATPDADALACSLENPESCEACQ 792


>gi|194389080|dbj|BAG61557.1| unnamed protein product [Homo sapiens]
          Length = 683

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/633 (40%), Positives = 380/633 (60%), Gaps = 22/633 (3%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
                + L   Y L ING   E PQ   MRV++G+     E    A+E YNLLS   F  
Sbjct: 63  TAATFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTH 119

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++PTLFN+GT  PQLSSCFL ++ DD + GI+  L++ A+++K +GG+G   + +R  G+
Sbjct: 120 ASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 179

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG 
Sbjct: 180 YIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 239

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q   
Sbjct: 240 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ--- 296

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   
Sbjct: 297 --GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEY 354

Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN
Sbjct: 355 TSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSN 414

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A  L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +
Sbjct: 415 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYET 474

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           ++GS   +G+   D   +            T    W  LK+++   G+RNS  +A  PTA
Sbjct: 475 YEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTA 524

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW E M + +   +GS
Sbjct: 525 STAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGS 584

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
           I +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++ 
Sbjct: 585 IQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHF 644

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
             W  GLKT  YYLR+R A +  + TL     K
Sbjct: 645 YGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLK 677



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 13/156 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNY-----AKVTAR---FLLEK---LRREVLTTVYKKPQKATHHEMQCL 251
             ++ T    E +Y      KV  R    L+     + +E +    +     +       
Sbjct: 61  AETAATFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHA 120

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287
            P  F         +     SM D  +  + + LK 
Sbjct: 121 SPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQ 156


>gi|302554046|ref|ZP_07306388.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471664|gb|EFL34757.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 793

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 306/804 (38%), Positives = 439/804 (54%), Gaps = 52/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 31  LLRTLTELTADLPDTDPGRVAAAALRGRSARADEAELRDLATEAAAGLISEDPAYSRLAA 90

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +R E  +                     F   +  G +  L+ +   +F     
Sbjct: 91  RLLTIGIRAEAASQGVTS----------------FTESVVVGHREGLIADRTAEFVRLHA 134

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ L+ RY L        +E PQ F +RVA GLA   T + 
Sbjct: 135 ARLDALIDPAADDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVAAGLAEDHTARS 194

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 195 VDEVAALYELMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 254

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 255 KHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 314

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +A W+LFSP +V +L DL+
Sbjct: 315 WHSDVEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFSPSDVPELVDLW 374

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+ AY   E      +    R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 375 GEEFDTAYRAAEA-----KGLAKRTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQT 429

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--YDKLASTIRTAVR 630
                VVHSSNLCTEI   +S  ETAVCNLGS+NL A    +  D  +D+L +T+RTAV 
Sbjct: 430 AEPGHVVHSSNLCTEILEVTSDGETAVCNLGSVNLGAFVDTSTGDLDWDRLDATVRTAVT 489

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 490 FLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRLPFDSPEAKALSTRIAERI 549

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS +LA+  G   +++ +   +GV   D             +  T    W  L+
Sbjct: 550 MLAAYEASADLAERSGPLPAWEKTRTARGVLHPDHY----------DVELTWPERWAALR 599

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           +R+   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV+EL
Sbjct: 600 ERIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDEL 659

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+   GS+ +   IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+
Sbjct: 660 KRLGVWDARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQS 719

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +             A     
Sbjct: 720 QSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRI----------ARAAQATVP 769

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             ++     +  S  +   CE CQ
Sbjct: 770 AQATPDPEAVACSLENPESCEACQ 793


>gi|224097022|ref|XP_002189376.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
           [Taeniopygia guttata]
          Length = 847

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 267/844 (31%), Positives = 405/844 (47%), Gaps = 84/844 (9%)

Query: 151 DGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           DG        ++   +++ C GL    V    V                           
Sbjct: 45  DGRQERVMFDKITSRIQKLCYGLNADFVDPLCVS-------------------------- 78

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
                   +   A+FLL  L   V   +        T   M+ LY        +      
Sbjct: 79  --------SFPGAQFLLWDLDLLVPEASQASSNPPKTCDVMEDLYTYINPHNGKHSPMIS 130

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327
                ++  +   L + + Y+RDF++ Y G + L   Y L IN    E PQ   MRV++G
Sbjct: 131 KETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVSVG 190

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGA 386
           +          A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  
Sbjct: 191 IH---KADIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDT 247

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRK 445
           L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG  KR 
Sbjct: 248 LKQCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 307

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+
Sbjct: 308 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 367

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           E   L D++G+EFE  YE+YERQ      +V R + A  LW  ++    ETG P++ +KD
Sbjct: 368 ECPGLDDVWGEEFEKLYESYERQ-----GRVRRVVKAQQLWYAIIESQTETGTPYMLYKD 422

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAST 624
            CN +S QQ++G +  SNLCTEI   +S EE AVCNL SI L  +      +D+ KLA  
Sbjct: 423 SCNRKSNQQNLGTIKCSNLCTEIVEYTSREEVAVCNLASIALNMYVTPEHSYDFKKLAEV 482

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI-GLGLMGFQSALHLL------------- 670
            +  VR L+ +IDIN + + +        R      L   ++ L                
Sbjct: 483 TKVIVRNLNKIIDINYYPVPEDLNRAQFVRGAPHAELSSEETWLPQTPRSPEALPGFWGS 542

Query: 671 -------HIPYASPEAVEIADESMEFIS------------FHAISASVELAQERGAYSSF 711
                     Y     V    ++ +               +     S      +    + 
Sbjct: 543 GLTGLRVRCSYERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTI 602

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           K S     +    S   + +  D   +  +    W  LK+++   G+RNS  ++  PTA+
Sbjct: 603 KCSNLCTEIVEYTSREEILQY-DMWNVTPSDLWDWKALKEKIAKYGVRNSLLISPMPTAS 661

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L +R LW+E M + +  H+GSI
Sbjct: 662 TAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSI 721

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            NI  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++  
Sbjct: 722 QNIPEIPDDLKQLYKTVWEISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFY 781

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            W  GLKT  YYLR++ A +  + TL      +       +     +   +  S  +  E
Sbjct: 782 GWKQGLKTGMYYLRTKPAANPIQFTLNKEKLREREKASREEEEKERNKAAMVCSLENREE 841

Query: 950 CEVC 953
           C +C
Sbjct: 842 CLMC 845


>gi|290957505|ref|YP_003488687.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
 gi|260647031|emb|CBG70130.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
          Length = 802

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 304/808 (37%), Positives = 435/808 (53%), Gaps = 49/808 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD----LETALIFSSRTLIEKEPNYA 217
           L   + E    L D     V +   +      + ++    L      ++  LI ++P Y+
Sbjct: 29  LLRTLTELTVDLPDADPGRVAAAALRGRSSRAATAEMVAELRELATEAAAGLISEDPAYS 88

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF- 276
           K+ AR L   +R E  +                     F   I  G +  L+ +   +F 
Sbjct: 89  KLAARLLAIGIRAEAASQGVTT----------------FTESIAVGHREGLVADRTAEFV 132

Query: 277 --DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKE 332
                 L   +    D  F Y GL+ L+ RY L        +E PQ F +RVA GLA  +
Sbjct: 133 RVHGARLDALVDPAGDDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVASGLAEDD 192

Query: 333 TEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQEN 390
           T +        Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + 
Sbjct: 193 TPRAVDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQV 252

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   
Sbjct: 253 ARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAV 312

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L
Sbjct: 313 YLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVPEL 372

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            DL+G+EFE AY   E           + I+A  L+ +M+  L +TG+ W+TFKD  N  
Sbjct: 373 VDLWGEEFEAAYRKAEANGLA-----RKTIAARDLYGRMMRTLAQTGNGWMTFKDAANRT 427

Query: 571 SPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIR 626
           + Q      VVHSSNLCTEI   +   ETAVCNLGS+NL A         D+++L  T+R
Sbjct: 428 ANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDLDWERLDETVR 487

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAV  LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++   
Sbjct: 488 TAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRI 547

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E I   A  AS +LA+  G   +++ +   +GV   D  G+                 W
Sbjct: 548 AERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHYGVEP----------AWSERW 597

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L++RV   GMRN+  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+L
Sbjct: 598 AALRERVAATGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYL 657

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V +LK+  +WD      L+  +GS+ +   IP D++ ++ TA+EI    LI+ A+ R  +
Sbjct: 658 VRDLKELGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPY 717

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           +DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++            
Sbjct: 718 LDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARA---AQGQARQPE 774

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                  +T    +  S  +   CE CQ
Sbjct: 775 TTVPVQQATSEEALACSLENPESCEACQ 802


>gi|297157410|gb|ADI07122.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 799

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 301/800 (37%), Positives = 438/800 (54%), Gaps = 33/800 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L       V +   +  + G   ++L T    ++  LI +EP Y+K+ A
Sbjct: 26  LLRTLTKLTADLPATDPGKVAAAALRGRHPGSDAAELRTLATEAAAGLIAEEPEYSKLAA 85

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           +    +   + E           A  +       D   +
Sbjct: 86  RLLTLAIAEEAAGQGAV----SFSSSVAVGHREGLIA----DGTAEFVTSHAARLDA-LV 136

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EKR 338
              L    D  F Y GL+ L+ RY L        IE PQ F +RVA GLA   +++    
Sbjct: 137 DKALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDHSQRALDD 196

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
             E Y L S+  ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 197 VAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHA 256

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C YLETWH 
Sbjct: 257 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHA 316

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  +A W+LFSP +   L DL+G+E
Sbjct: 317 DIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGEE 376

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575
           F+ AY   E      E    + + A  L+ +M+  L +TG+ W+TFKD  N  + Q    
Sbjct: 377 FDAAYTKAEA-----EGLAVKTVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAEP 431

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDN 634
             VVHSSNLCTEI   +   ETAVCNLGS+NL AH   + Q D+ +L +T+RTAV  LD 
Sbjct: 432 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLGEDGQMDWARLDATVRTAVTFLDR 491

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+DIN +  ++A  SN   R +GLGLMG Q     L +P+ SPEA +++ +  E I   A
Sbjct: 492 VVDINFYPTQEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQQLSTQISERIMLAA 551

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS  LA+  G + ++  +   +GV   D                T    W  L++R+ 
Sbjct: 552 YEASCALAERHGPHPAWSATRTARGVLHPDH---------YTDAVATWPERWAALRERMA 602

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LVN+LK+  
Sbjct: 603 KSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKKLG 662

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +WD      L+  +GS+ +   +P ++++++ TA+E+    LI+ A+ R  ++DQ+QSLN
Sbjct: 663 VWDAQSREALRESNGSVQDFSWVPKEVRELYRTAWEVPQRALIDMAAARTPYLDQSQSLN 722

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           L++  P+  KL  +Y  AW  G+KTTYYLRSR AT +              VP+    + 
Sbjct: 723 LFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIA---QSARAAAPATVPIPTQQAP 779

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                I  S  +   CE CQ
Sbjct: 780 VDPEVIACSLENPESCEACQ 799


>gi|239944173|ref|ZP_04696110.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239990629|ref|ZP_04711293.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces roseosporus NRRL 11379]
 gi|291447644|ref|ZP_06587034.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
 gi|291350591|gb|EFE77495.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
          Length = 807

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 306/799 (38%), Positives = 434/799 (54%), Gaps = 32/799 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 35  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 94

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           +    +   + E      +       LH   +D  +   
Sbjct: 95  RLLTLSIADEAAGQGAT----SFSASVAVGHREGLIA--DRTAAFVELHAKALDELVER- 147

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EKR 338
              L    D  F Y GL+ L+ RY L        IE PQ F +RVA GLA  E+ +    
Sbjct: 148 --TLAEGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALDE 205

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
               Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 206 VAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 265

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH 
Sbjct: 266 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 325

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G  
Sbjct: 326 DIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGDA 385

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575
           F+ AY   E      +    + + A  L+ +M+  L +TG  W+TFKD  N  + Q    
Sbjct: 386 FDAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 440

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
             VVHSSNLCTEI   ++  ETAVCNLGS+NL A  AN   D+D+L ST+RTAV  LD V
Sbjct: 441 GRVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVANGSIDWDRLDSTVRTAVTFLDRV 500

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++ +  E I   A 
Sbjct: 501 VDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAY 560

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+  G   ++  +   +GV   D                     WD L+ RV  
Sbjct: 561 EASCDLAERSGPLPAWSETRAARGVLHPDHY----------DTELNWPERWDALRARVAK 610

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+ELK+  +
Sbjct: 611 TGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLGV 670

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL
Sbjct: 671 WDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNL 730

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +  +          A       S+ 
Sbjct: 731 FLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI--ARAASGQASAAAPIPVQQASAP 788

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +  I  S  +   CE CQ
Sbjct: 789 DADAIACSLENPESCEACQ 807


>gi|299471069|emb|CBN78928.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 653

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/663 (37%), Positives = 380/663 (57%), Gaps = 29/663 (4%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
             Y L  +G  +E PQ   MRV++G+   + +K    +E Y+L+S   F  +TPTLFN+G
Sbjct: 6   RSYLLKADGKVVERPQHMIMRVSVGIHKDDIDKV---IETYDLMSQRLFTHATPTLFNAG 62

Query: 363 TRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQ+SSCFL T+  D + GI+  L++ A ++K++GG+G     VR   ++I GTNG S
Sbjct: 63  TPKPQMSSCFLLTMKEDSINGIYDTLKQCAQISKHAGGIGLSIHHVRAANSYIRGTNGSS 122

Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++P L+V N+TA  V+QGG KRKG++  YLE WH D+  FLDL+KN G++  R  D+ 
Sbjct: 123 NGIVPMLRVFNNTARYVDQGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLF 182

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A WIPDLFM+RV  +  W LF P+E   L D + +EF+  YE YE +    E    R +
Sbjct: 183 YAMWIPDLFMQRVEADGDWNLFCPNEAPGLSDTHSEEFKELYEQYEAK----EGLSRRTM 238

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  +L    ETG P++ +KD CN +S Q+++G + SSNLCTEI   ++ +E AVC
Sbjct: 239 KARLLWDAILESQVETGTPYMLYKDACNFKSNQKNLGTIKSSNLCTEIVEYTAPDEVAVC 298

Query: 601 NLGSINLLAH-------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           NL SINL A             +D++KL        R L+ VID N + IE+A+ SN  H
Sbjct: 299 NLASINLSALVIPPTAETTKATYDFEKLQHISEVVTRNLNRVIDANYYPIEEARNSNMRH 358

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G   A   + +P+ S EA ++  +  E I F A++ASVELA+E G Y ++ G
Sbjct: 359 RPIGIGVQGLADAFIKMRLPFESEEACKLNRDIFETIYFGAVNASVELAKELGPYETYAG 418

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S   +G+   D  G          +  T R  W  LK R+   G+RNS  +A  PTA+ A
Sbjct: 419 SPASEGLLQFDLWG----------VKPTGRHDWAALKARMAEHGLRNSLLVAPMPTASTA 468

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G ++S++P   N+Y +  ++G+FTVVN +L+ +L +R LW   + + +    GS+ N
Sbjct: 469 QILGNNESVEPFTSNMYNRRVLAGEFTVVNKYLLRDLTERGLWTPEVRNQIIADQGSVQN 528

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
           + +IP +LK ++ T +EI   +++  A+ R  +I Q+QS+N+++ E S  KL  ++  AW
Sbjct: 529 VRQIPQELKDLYKTVWEIKQKFILNQAADRGAYICQSQSMNVHMAEASFGKLSSMHFYAW 588

Query: 894 LMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC--TSDTEC 950
             GLKT  YYLR+R      + T+     K++        + + + G  +      + EC
Sbjct: 589 KKGLKTGMYYLRTRPKADAIQFTVDQSSLKVSREEAAKSGAKSGAEGGSAGLEVEEEPEC 648

Query: 951 EVC 953
             C
Sbjct: 649 LSC 651


>gi|239502692|ref|ZP_04662002.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter
           baumannii AB900]
          Length = 790

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 344/838 (41%), Positives = 480/838 (57%), Gaps = 76/838 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +G    F+  ++E  V  A  G   V S+ V+ +    +YDG+  SD++ ALI 
Sbjct: 1   MNVTKRNGATEPFSPSKIEKAVNWAVDG-TSVESQEVIDKAILLIYDGIKTSDIQQALIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  L+   + + + V+AR LL  L + V     K       +        +   Y+E+G
Sbjct: 60  GAAKLVSATKADASLVSARLLLLDLYKTVCGVNGKVSGGGFQY-------PHIKDYLEKG 112

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN------------- 310
           V  +LL   ++++DL  +   +K ERD +F YLGL  L DRYF+  N             
Sbjct: 113 VSLKLLDPELLNYDLERINAAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMS 172

Query: 311 GSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           G+ IE+PQ F+MRVAMG+ALKE    +   A+ +Y L S   ++ STPTLFN+GT HPQL
Sbjct: 173 GNIIELPQHFWMRVAMGVALKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQL 232

Query: 369 SSCFLTTVPD---------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           SSC+L  V D             IFGA++E A+L+K++GG+G DWTPVRG    I GTNG
Sbjct: 233 SSCYLNQVSDTIAADEGDNRFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNG 292

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            S GV+P++KV N+TAVAVNQGGKRKG+V  YLE WH D   F +L++ +GDDRRR HD+
Sbjct: 293 ISSGVVPYIKVQNNTAVAVNQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDV 352

Query: 480 NTANWIPDLFMKRVTQNA-GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
             A W+PDL ++R       W+ FSP    +LH+LYG++F   YE  E        +   
Sbjct: 353 FPAAWVPDLLIERKEDPNAMWSFFSPKRFPELHELYGEDFVKRYEELEAA-----GEYDF 407

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ A+ +WR +LT LFETGHPWIT+KD CN R+PQQH GV+H SNLCTEITLN+S +ETA
Sbjct: 408 QLPAIQVWRHLLTNLFETGHPWITYKDECNRRNPQQHAGVIHHSNLCTEITLNTSKDETA 467

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGSINL    +      ++L   IR A+R LD+VID+N +  ++A  SN  HR IGL
Sbjct: 468 VCNLGSINLSQVMSAPNP-LERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGL 526

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG+   L    + + S E ++ AD   E IS+ AI AS +LAQERG+Y SF+GS W +
Sbjct: 527 GVMGYYEWLVKQGVDFESEEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSK 586

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+ PID+  L+ + +      R  R  W+ L+++VK  GMRNSN MAIAPTATI+NI G 
Sbjct: 587 GILPIDNAKLMEDGKPFFDQPR--RFDWEALREKVKK-GMRNSNVMAIAPTATISNIAGT 643

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +Q  +P +   Y KSN+ G + VV+                       H G         
Sbjct: 644 TQCTEPPFLLEYFKSNLGGTYQVVDPA-------------------IAHVG--------- 675

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
            D   +   ++ +D +++I++A+ RQKWIDQ+QS NL+     +G+ LD  Y  A  +GL
Sbjct: 676 -DKYHLLKESYYVDQLYIIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGL 734

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
           KTTYYLR++S    EKS                   S  +   P  C+  D +CE CQ
Sbjct: 735 KTTYYLRNQS--DAEKSASMRTKVIAELANAALGKLSEPTESAPKMCSILDPDCESCQ 790



 Score = 45.6 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
          + V KRNG    F PSKI +A+     AV+G        +   I  + +  
Sbjct: 1  MNVTKRNGATEPFSPSKIEKAVN---WAVDGTSVESQEVIDKAILLIYDGI 48


>gi|38344004|emb|CAC17631.2| class I ribonucleotide-diphosphate reductase large chain
           [Streptomyces microflavus]
          Length = 793

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 301/804 (37%), Positives = 433/804 (53%), Gaps = 49/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L  I+ E  + L D     V +   +  + G   ++L      ++  LI ++P Y+++ A
Sbjct: 28  LLRILTELTADLPDTDPGRVAAAALRGRHPGSDTAELRELATEAAAGLIAEDPAYSRLAA 87

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +  E                        F   +  G +  L+ E   +F     
Sbjct: 88  RLLTLTIAEEAAGQGAVS----------------FSESVATGHREGLIAERTAEFAALHA 131

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L + +    D  F Y GL+ LY RY L        IE PQ F + VA GLA  ++ + 
Sbjct: 132 DRLDSAIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLGVAAGLAEDDSVRA 191

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+
Sbjct: 192 LDEVTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 251

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 252 KHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 311

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L DLY
Sbjct: 312 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLY 371

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+ AY   E      +    + + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 372 GAEFDAAYVAAEA-----KGLARKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 426

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVR 630
                VVHSSNLCTEI   +   ETAVCNLGS+ L A         D+++L +T+RTAV 
Sbjct: 427 AEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSVKLGAFVDTASGELDWERLDATVRTAVT 486

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I
Sbjct: 487 FLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRISERI 546

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  AS +LA+  G   ++  +   +GV   D             +  T    W  L+
Sbjct: 547 MLAAYEASADLAERNGPLPAWDKTRTARGVLHHDHY----------DVELTWPERWAALR 596

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+  +GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+EL
Sbjct: 597 ARIAEVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDEL 656

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+   GS+ +   +P + + ++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 657 KRLGVWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAARTPFLDQA 716

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR          +       A PV  
Sbjct: 717 QSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSR-------PATRIARAARAAAPVPA 769

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
            + +  +  I  S  +   CE CQ
Sbjct: 770 QSQAPDADAIACSLENPESCEACQ 793


>gi|182436092|ref|YP_001823811.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178464608|dbj|BAG19128.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 804

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 306/800 (38%), Positives = 432/800 (54%), Gaps = 34/800 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 32  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           +    +   + E                 ++    L  L
Sbjct: 92  RLLTRTIADEAAGQGAT----SFSASVAVGHREGLIA------DRTAAFVALHATALDQL 141

Query: 282 -ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337
               L    D  F Y GL+ L+ RY L        IE PQ F +RVA GLA  E+ +   
Sbjct: 142 VGQALTDGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALD 201

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396
                Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K+
Sbjct: 202 EVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKH 261

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH
Sbjct: 262 AGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWH 321

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G 
Sbjct: 322 ADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGD 381

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574
            F+ AY   E      +    + + A  L+ +M+  L +TG  W+TFKD  N  + Q   
Sbjct: 382 AFDAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAE 436

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
              VVHSSNLCTEI   +   ETAVCNLGS+NL A  AN   D+D+L ST+RTAV  LD 
Sbjct: 437 PGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLDSTVRTAVTFLDR 496

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++ +  E I   A
Sbjct: 497 VVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAA 556

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS +LA+  G   ++  +   +GV   D         D           WD L+ RV 
Sbjct: 557 YEASCDLAERSGPLPAWSKTRAARGVLHPDHYATELNWPDR----------WDALRARVA 606

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+ELK+  
Sbjct: 607 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLG 666

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLN
Sbjct: 667 VWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 726

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           L+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +  +          A       S+
Sbjct: 727 LFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI--ARAASGQASAAAPLPVQQASA 784

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             +  I  S  +   CE CQ
Sbjct: 785 PDADAIACSLENPESCEACQ 804


>gi|307328556|ref|ZP_07607730.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           violaceusniger Tu 4113]
 gi|306885824|gb|EFN16836.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           violaceusniger Tu 4113]
          Length = 804

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 307/803 (38%), Positives = 441/803 (54%), Gaps = 34/803 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +  + G  E++L    I ++  LI +EP Y+++ A
Sbjct: 26  LLRTLTGLTADLPATDPGKVAAAALRGRHPGSDEAELRGLAIEAAAGLIAEEPEYSRLAA 85

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           +    +Q  + E           +     +     L  L
Sbjct: 86  RLLALTITEEAAGQGAV----SFSTSVQVGHREGLLA------DSTAEFAAAHAARLDAL 135

Query: 282 -ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337
               L    D  F Y GL+ LY RY L        IE PQ F +RVA GLA   +E+   
Sbjct: 136 VERALADGADKRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALD 195

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396
              E Y L S+  ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K+
Sbjct: 196 DVAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKH 255

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GG+G  ++ +R  G+ I GTNG S G++PFL+  + +  AVNQGG+RKGA C YLETWH
Sbjct: 256 AGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWH 315

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  +A W+LFSP +   L DL+G 
Sbjct: 316 ADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGD 375

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574
           EF+ AY   E      E +  +++ A  L+ +M+  L +TG+ W+TFKD  N  + Q   
Sbjct: 376 EFDAAYRKAEA-----EGRAVKQVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAE 430

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLD 633
              VVHSSNLCTEI   ++  ETAVCNLGS+NL AH   + Q D+++L +T+ TAV  LD
Sbjct: 431 PGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLDEDGQVDWERLDATVHTAVTFLD 490

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V+DIN +  ++A  SN   R +GLGLMG Q     L +P+ SPEA  ++    E I   
Sbjct: 491 RVVDINFYPTDEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKALSTRISERIMLA 550

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  AS ELA+  G + ++  +   +GV   D                T    W+ L+ R+
Sbjct: 551 AYEASCELAERHGPHPAWSETRTARGVLHPDH---------YTDAVATWPERWEALRTRM 601

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++LK+ 
Sbjct: 602 AKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKKL 661

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +WD      L+  +GS+     +P D++ ++ TA+EI    LIE A+ R  ++DQ+QSL
Sbjct: 662 GVWDAHTREALRESNGSVQEFSWVPADVRDLYRTAWEIPQRALIEMAAARTPYLDQSQSL 721

Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           NL++  P+  KL  +Y  AW  G+KTTYYLRSR AT + +S   G        P   P  
Sbjct: 722 NLFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGGAAATAPAPALIPVQ 781

Query: 934 STHSLGIPSSCT--SDTECEVCQ 954
              +     +C+  +   CE CQ
Sbjct: 782 QAPAEADAIACSLENPESCEACQ 804


>gi|326776717|ref|ZP_08235982.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657050|gb|EGE41896.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           cf. griseus XylebKG-1]
          Length = 804

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 305/800 (38%), Positives = 432/800 (54%), Gaps = 34/800 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 32  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           +    +   + E                 ++    L  L
Sbjct: 92  RLLTRTIADEAAGQGAT----SFSASVAVGHREGLIA------DRTAAFVALHATALDQL 141

Query: 282 -ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337
               L    D  F Y GL+ L+ RY L        IE PQ F +RVA GLA  E+ +   
Sbjct: 142 VGQALTDGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALD 201

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396
                Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K+
Sbjct: 202 EVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKH 261

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH
Sbjct: 262 AGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWH 321

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G 
Sbjct: 322 ADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGD 381

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574
            F+ AY   E      +    + + A  L+ +M+  L +TG  W+TFKD  N  + Q   
Sbjct: 382 AFDAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAE 436

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
              VVHSSNLCTEI   +   ETAVCNLGS+NL A  AN   D+D+L +T+RTAV  LD 
Sbjct: 437 PGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLDATVRTAVTFLDR 496

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++ +  E I   A
Sbjct: 497 VVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAA 556

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS +LA+  G   ++  +   +GV   D         D           WD L+ RV 
Sbjct: 557 YEASCDLAERSGPLPAWSRTRAARGVLHPDHYATELNWPDR----------WDALRARVA 606

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN++LV+ELK+  
Sbjct: 607 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLG 666

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLN
Sbjct: 667 VWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 726

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           L+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +  +          A       S+
Sbjct: 727 LFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI--ARAASGQASAAAPLPVQQASA 784

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             +  I  S  +   CE CQ
Sbjct: 785 PDADAIACSLENPESCEACQ 804


>gi|256391239|ref|YP_003112803.1| ribonucleoside-diphosphate reductase, subunit alpha [Catenulispora
           acidiphila DSM 44928]
 gi|256357465|gb|ACU70962.1| ribonucleoside-diphosphate reductase, alpha subunit [Catenulispora
           acidiphila DSM 44928]
          Length = 841

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 307/800 (38%), Positives = 435/800 (54%), Gaps = 53/800 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L D+    V+ +T+  +  G     +    + S+  LI +EP Y+K+ A
Sbjct: 88  LAREIAACSADLPDIDVNRVVRKTFAGLPPGAGADQVADLAVQSAAELIGEEPQYSKLAA 147

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   + RE           +    +   + E              + E+++       
Sbjct: 148 RLLSGVIAREAAGQGAT----SFSASVAVGHREGL---------IGDVTEALITGAAARF 194

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
              +    D  FEY GL+ +YDRY L        IE PQ F +RVA GL+       + A
Sbjct: 195 DAAIDPAGDLRFEYFGLRTVYDRYLLRHPVTRRVIETPQHFLLRVAAGLSQ----DPQEA 250

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSG 398
           V FY L+SS  ++ S+PTLFNSGTRH Q+SSC+L   P D+L  I+    + A L+K++G
Sbjct: 251 VGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCYLVDSPLDELDSIYDRYHQVARLSKFAG 310

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G  ++ VR  GA I  TNG+S G++PFL+  + +  AVNQGG+RKGA C YLE WH D
Sbjct: 311 GIGIGFSRVRSRGALIRSTNGRSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLEPWHPD 370

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEFL LR NTG+D RRTH++N ANWIPD FM+RV  +  W+L  PD+V +L DL+G EF
Sbjct: 371 IEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMDPDQVPELPDLWGAEF 430

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HV 576
           + AY   E      E +  R++SA  L+ KM+  L +TG+ W+TFKD  N    Q     
Sbjct: 431 DAAYRKAEA-----EGRYSRQVSARELYGKMMRTLAQTGNGWMTFKDASNQLCNQTGVPG 485

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDN 634
             VH SNLCTEI   SS  ETAVCNLGSINL AH    +   D+D+L +T+RTAV  LD 
Sbjct: 486 NTVHLSNLCTEIIEVSSDTETAVCNLGSINLAAHLTPARDAVDWDRLRATVRTAVVFLDR 545

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VIDIN +  E+   SN   R +GLGLMG Q     L +P+    A E++    E I   A
Sbjct: 546 VIDINYYPSEQTAASNPRWRPVGLGLMGLQDVFFALRLPFDDERARELSTRISEEIYLTA 605

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  S  LA+E GA+ +F  +   +G    D           +A +      W+ ++ RV 
Sbjct: 606 LETSAGLAEEFGAHPAFADTRAAKGDLQPDLWN--------VATSPELATRWNAVRGRVA 657

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  +NS LV ELK   
Sbjct: 658 ATGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFLQINSALVGELKALG 717

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           LW  A+   +K  +GS+  +E +P +++ ++ TA+E+    LI+ A+ R  +IDQ+QSLN
Sbjct: 718 LWTPAVREAIKRAEGSVQGVEALPAEVRALYRTAWELPQRALIDLAAARGPFIDQSQSLN 777

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           L+L  P+  KL  +Y  AW  GLK+TYYLRSR AT +++                   + 
Sbjct: 778 LFLAAPTIGKLSSMYMYAWKAGLKSTYYLRSRPATRIQQ----------------ATVAV 821

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                +  S  +   CE CQ
Sbjct: 822 AAEEAVACSLENPESCEACQ 841


>gi|301629347|ref|XP_002943804.1| PREDICTED: ribonucleoside-diphosphate reductase subunit alpha-like
           [Xenopus (Silurana) tropicalis]
          Length = 1234

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 344/613 (56%), Positives = 430/613 (70%), Gaps = 16/613 (2%)

Query: 5   KDVNKGDEDAFPSLAYPF--PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
              +       P+ A        +   Q+++RNG V +F+P KI+ A+MKAF+AV G   
Sbjct: 7   TPSSTHANPVLPAFAATARAQSALAHYQILRRNGSVAAFEPQKIAVALMKAFLAVHGTQG 66

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           + S  V++++  LT   V  L +        HIED+QDQVE  LM+ GHH++ R YVLY 
Sbjct: 67  AASASVREVVDELTHTVVRALARSRPGGGTFHIEDVQDQVELGLMRGGHHEVARAYVLY- 125

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181
                 +          P AP + ++ D+G  +  +  RL  +V  ACSGL  +V  + +
Sbjct: 126 -RERRAQERAQQQAQLLPQAPAIHVV-DNGQRVLLDPLRLRALVASACSGLSSEVQPEPI 183

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET +N+YDG+   ++  A I ++RTLIEK+P+Y   TAR LL  + REVL        
Sbjct: 184 VAETLRNLYDGIPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQ------ 237

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                 M   Y   F + I++GV   LL   ++ FDL  LA  L+ +RD  F+YLGLQ L
Sbjct: 238 DVAPAAMGEAYANSFPQCIQKGVDNELLDPQLLQFDLPRLAKALQAQRDLQFDYLGLQTL 297

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETE----KEKRAVEFYNLLSSFHFMCSTPT 357
           YDRYFLH+  +RIE+PQ+FFMRVAMGLAL+E +      +RA+EFY +LSSF FM STPT
Sbjct: 298 YDRYFLHVRKARIELPQSFFMRVAMGLALREGDLQTTGTERAIEFYEVLSSFDFMSSTPT 357

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFNSGT   QLSSC+LTTVPD+L GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GT
Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDNLEGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH
Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           DMNTANWIPDLFMKRV     WTLFSP E  DLHDLYG+ FE AY  YE  ADRGE+ +F
Sbjct: 478 DMNTANWIPDLFMKRVMDKGQWTLFSPSETPDLHDLYGQAFERAYCAYEAMADRGELTLF 537

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           ++++AV LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S  ET
Sbjct: 538 KRVAAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETET 597

Query: 598 AVCNLGSINLLAH 610
           AVCNLGS+NLL H
Sbjct: 598 AVCNLGSVNLLRH 610



 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 160/353 (45%), Positives = 228/353 (64%), Gaps = 19/353 (5%)

Query: 619  DKLASTIRTAVRVLDNVIDINCHTIEKAKK--SNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            +K+   ++ +          + +++   ++                   +L+ L IPYAS
Sbjct: 884  EKIYKLVQISTCFFRMNNQPSKYSLPDIREVWXXXXXXXXXXXXXXXXXSLYELRIPYAS 943

Query: 677  PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DE 735
              AV  ADESME I ++A  AS ELA+ERG Y+S++GSLW++G+ P+D++ LL + R   
Sbjct: 944  DAAVAFADESMEAICYYAYWASTELAKERGQYASYRGSLWERGILPLDTLNLLQQARDGH 1003

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            + ++R++RL WD L+K++   GMRN+NC+AIAPTATI+NI GV  SI+PS+ NL VKSN+
Sbjct: 1004 VQVDRSTRLDWDALRKKIAQDGMRNANCVAIAPTATISNIVGVDASIEPSFGNLSVKSNL 1063

Query: 796  SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            SG+FTVVN++LV +LK+  LWD+ M+ DLK+  GS+  I+R P DLK ++ATAFE++P W
Sbjct: 1064 SGEFTVVNAYLVRDLKRLGLWDDVMVMDLKHFKGSLQPIDRAPQDLKALYATAFEVEPRW 1123

Query: 856  LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            L+E+ASRRQKWIDQAQSLN+Y+   SGKKLD  Y+ AW+ GLKTTYYLR++SAT VE ST
Sbjct: 1124 LVEAASRRQKWIDQAQSLNIYMGGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMST 1183

Query: 916  LKGVDGKLNAVPVTDPNS--------------STHSLGIPSSCTSDTECEVCQ 954
            +     +LNAV    P+               +T +  +      D  CE CQ
Sbjct: 1184 VNKR--QLNAVASHGPDDALEAAAAAAQAQMNATPATDVKFCALDDPGCEACQ 1234


>gi|68304287|ref|YP_249755.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973116|gb|AAY84082.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 780

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 266/819 (32%), Positives = 424/819 (51%), Gaps = 55/819 (6%)

Query: 146 KIMMDDGTL-ISFNSKRLEMIVEEACSGLQD----VSSKIVLSETYKNMYDGLSESDLET 200
           ++++ +G   I  N   ++  +      L+     +    +  + +  +YD + E + E 
Sbjct: 6   QMILRNGRESIKVNMDYIKTYLYTRSGDLKKNKEYIDFNYIADKIFCGIYDNIHEDEFEE 65

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
                  +   K   Y+ +     + KL  +      K  +    + +  L   ++   I
Sbjct: 66  YSANVCASQTYKHYVYSDLAVVIAVNKLHAKTEDDYSKVVEILWKNGI--LCDSFYSIVI 123

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQA 319
           +                L  +   + Y+ D  + Y GL  L   +Y + ++   +E PQ 
Sbjct: 124 KH---------------LDSINASISYDFDKHYTYFGLMTLIEGKYLMRVDNIVVERPQH 168

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378
             MRVA+ +   + E    A+E Y L+ +  F  ++PTLF+SG + PQ+SSC+L  +  D
Sbjct: 169 MLMRVALQIHGDDIE---SAIESYRLMRAKLFTHASPTLFSSGMKMPQMSSCYLLNIQED 225

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GI+  L + AM++K+ GG+G + T +R   + I  TNG + G+ P L+V N     V
Sbjct: 226 SINGIYKTLNDCAMISKHGGGIGLNVTQIRATNSKIESTNGTAAGLGPALRVFNSMLRHV 285

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGGKRKGA+  Y+E WH DV  FLDL++N G +  +  D+  A W PDLFMKRV     
Sbjct: 286 DQGGKRKGAMTVYIEPWHADVFTFLDLKRNMGAEDMKARDLLFAMWTPDLFMKRVKTGGK 345

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  PDE   L+D YG+EFE  YENYE      E K  ++ISA+ L RK++    ETG 
Sbjct: 346 WSLMCPDECPGLNDCYGQEFEDLYENYEA-----EGKFKKQISALDLHRKIIETQVETGA 400

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQF 616
           P++ FKD  N ++ Q++ GV+ +SNLC EI   S + ETAVCNL SI  N  A+     F
Sbjct: 401 PYMMFKDHVNNKNNQKNEGVIRNSNLCAEIVQYSDNRETAVCNLASIAVNNFANKQFKSF 460

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+  L +  R     L+ +ID+N + +  A+ SN  HR IG+G+ G      +L +PY S
Sbjct: 461 DFKSLYNVSRVVTNNLNKIIDLNFYPLASAQASNFRHRPIGIGIQGLADTFAILDMPYDS 520

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++  +  E I + A+S S+ELA+  G Y S+ GS    G+   D   +        
Sbjct: 521 QEARDLNKKISETIYYGALSQSIELAKLHGTYDSYDGSPASCGLLQFDLWNINQSN---- 576

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WDELK+ +   G+RNS  +A  PTAT A I G ++S +P   NLYV+  +S
Sbjct: 577 -----DLWNWDELKREMAMHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLS 631

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G++ VVN  LV++L   +++   ++  +  ++GS+ NI+ IP ++K +  TA+EI    +
Sbjct: 632 GEYQVVNQHLVDKLVDTNVYSTDIMIKIIKNNGSVQNIDEIPHNIKALFKTAWEIKQKVV 691

Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           ++ A+ R  +IDQ+QSLNL++  P+ K L  I+  +W  GLKT  YYLR++ A +  + T
Sbjct: 692 LDMAAERGPYIDQSQSLNLFVANPTYKVLSSIHDYSWEKGLKTGMYYLRTKPAANTIQFT 751

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +            +  N + +   +  +C     CE CQ
Sbjct: 752 V---------PSSSAINRANNEPDVVDACYI--GCESCQ 779


>gi|74229829|ref|YP_309033.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
 gi|72259743|gb|AAZ67514.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
          Length = 772

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 262/814 (32%), Positives = 417/814 (51%), Gaps = 55/814 (6%)

Query: 150 DDGTLISFNSKRLEMIV----EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +G     +   ++  +     +     + +    +  +    +YD + + + E      
Sbjct: 4   RNGQSAVVDFDSIKSYLYCRSGDLTKNKEHIDFDHIADKIINGIYDNIDQDEFEDYSARV 63

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +   K   Y+ + A   + KL  +                 +  Y +        GV 
Sbjct: 64  CASQTYKHYVYSDLAAMIAINKLHAKT----------------EDDYSKVVDILWRNGVL 107

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQAFFMRV 324
               +   +  +   +   + Y+ D  + Y GL  +    Y + +N   +E PQ   MRV
Sbjct: 108 CDSFYWIAVK-NANVINAAISYDFDKQYTYFGLMTMIEGGYLMRVNNVTVERPQHMLMRV 166

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383
           A+ +     E  + A+E Y L+ S  F  ++PTLF+SG + PQ+SSC+L  +  D + GI
Sbjct: 167 ALQIHG---EDIESAIESYRLMRSKLFTHASPTLFSSGMKMPQMSSCYLLNIQEDSINGI 223

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           +  L + AM++K+ GG+G + + +R   + I  TNG + G+ P L+V N     V+QGGK
Sbjct: 224 YKTLNDCAMISKHGGGIGLNVSQIRAANSKIKSTNGTAAGLGPALRVFNSMLRHVDQGGK 283

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKGA+  Y+E WH D+  FLDL++N G +  +  D+  A W P LFMKRV+    W+L  
Sbjct: 284 RKGALAVYIEPWHADIFTFLDLKRNMGAEDMKARDLFFAMWTPSLFMKRVSAGEKWSLMC 343

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           PDE   L+D YG+EFE  YE+YE Q      K   +I A+ L RK++ +  ETG P++  
Sbjct: 344 PDECPGLNDCYGEEFERLYESYETQ-----GKFKEQILALDLHRKIIEIQVETGGPYMLH 398

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKL 621
           KD  N ++ Q+++GV+ +SNLC EI   S ++ETAVCNL SI  N  A+     FD++ L
Sbjct: 399 KDNVNEKNNQKNLGVIRNSNLCAEIVQYSDNKETAVCNLASIAVNCFANKRTKNFDFESL 458

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               R     L+ +ID N + +  A+ SN  HR IG+G+ G   A  +L++PY S +A E
Sbjct: 459 YKVARVVTNNLNKIIDKNFYPLTSAQVSNFKHRPIGIGIQGLADAFAILNLPYDSQQARE 518

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +  +  E I + A+S S+ELA+  GAY S+ GS    G    D   +             
Sbjct: 519 LNRKISETIYYGALSQSIELAKLHGAYDSYNGSPASSGHLQFDLWNISQSN--------- 569

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
               WDELK+++   G+RNS  +A  PTAT A I G ++S +P   NLYV+  +SG++ +
Sbjct: 570 DLWNWDELKRQMAIHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQI 629

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           VN  LV++L   +++   ++  +  ++GS+ NI+ IP D+K +  TA+EI    L+  A+
Sbjct: 630 VNQHLVDKLVDCNVYSTELMMKIIKNNGSVQNIDDIPHDVKALFKTAWEIKQKVLLNMAA 689

Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            R  +IDQ+QSLNL++  PS K L  I+  +W  GLKT  YYLR++ A +  + T+    
Sbjct: 690 DRGPYIDQSQSLNLFVANPSYKILSSIHNYSWEKGLKTGMYYLRTKPAANTIQFTV---- 745

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                 P + P +   +     +C     CE CQ
Sbjct: 746 ------PSSSPFTKPSTDDAELTCYV--GCESCQ 771


>gi|21223594|ref|NP_629373.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
 gi|8546892|emb|CAB94611.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
          Length = 791

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 27  LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 86

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 87  RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 130

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +  + D  F Y GL+ LY RY L        +E PQ F +RVA GLA  +T + 
Sbjct: 131 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTVRA 190

Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
              V   Y L+S   ++ S+PTLFNSGTRH Q+SSC+L   P D+L  ++  L + A L+
Sbjct: 191 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 250

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ VR  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 251 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 311 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 370

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+ AY   E           R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 371 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 425

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630
                VVHSSNLCTEI   +   ETAVCNLGS+NL A         D+++L +T+RTAV 
Sbjct: 426 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 485

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 486 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 545

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S +LA+  G   +++ +   +GV   D  G+                 W  L+
Sbjct: 546 MLAAYETSADLAERNGPLPAWEKTRTARGVLHPDHYGVEP----------AWPERWAALR 595

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+ T G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++L
Sbjct: 596 ARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 655

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+  +GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 656 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 715

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR A          +           
Sbjct: 716 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 767

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             ++     +  S  +   CE CQ
Sbjct: 768 VQAAPDPEAVACSLENPESCEACQ 791


>gi|7328344|emb|CAB82485.1| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces coelicolor A3(2)]
          Length = 791

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 27  LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 86

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 87  RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 130

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +  + D  F Y GL+ LY RY L        +E PQ F +RVA GLA  +T + 
Sbjct: 131 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTVRA 190

Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
              V   Y L+S   ++ S+PTLFNSGTRH Q+SSC+L   P D+L  ++  L + A L+
Sbjct: 191 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 250

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ VR  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 251 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 311 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 370

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+ AY   E           R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 371 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 425

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630
                VVHSSNLCTEI   +   ETAVCNLGS+NL A         D+++L +T+RTAV 
Sbjct: 426 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 485

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 486 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 545

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S +LA+  G   +++ +   +GV   D  G+                 W  L+
Sbjct: 546 MLAAYETSADLAERNGPLPAWEKTRTARGVLHPDHYGVEP----------AWPERWAALR 595

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+ T G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++L
Sbjct: 596 ARMATTGLRNSMLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 655

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+  +GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 656 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 715

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR A          +           
Sbjct: 716 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 767

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             ++     +  S  +   CE CQ
Sbjct: 768 VQAAPDPEAVACSLENPESCEACQ 791


>gi|256785294|ref|ZP_05523725.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           lividans TK24]
          Length = 791

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 27  LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 86

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 87  RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 130

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +  + D  F Y GL+ LY RY L        +E PQ F +RVA GLA  +T + 
Sbjct: 131 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTLRA 190

Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
              V   Y L+S   ++ S+PTLFNSGTRH Q+SSC+L   P D+L  ++  L + A L+
Sbjct: 191 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 250

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ VR  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 251 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 311 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 370

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+ AY   E           R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 371 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 425

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630
                VVHSSNLCTEI   +   ETAVCNLGS+NL A         D+++L +T+RTAV 
Sbjct: 426 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 485

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 486 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 545

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S +LA+  G   +++ +   +GV   D  G+                 W  L+
Sbjct: 546 MLAAYETSADLAERNGPLPAWEKTRTAKGVLHPDHYGVEP----------AWPERWAALR 595

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+ T G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++L
Sbjct: 596 ARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 655

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+  +GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 656 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 715

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR A          +           
Sbjct: 716 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 767

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             ++     +  S  +   CE CQ
Sbjct: 768 VQAAPDPEAVACSLENPESCEACQ 791


>gi|289769188|ref|ZP_06528566.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
 gi|289699387|gb|EFD66816.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
          Length = 794

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   +    + L       V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 30  LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 89

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 90  RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 133

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336
             L   +  + D  F Y GL+ LY RY L        +E PQ F +RVA GLA  +T + 
Sbjct: 134 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTLRA 193

Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394
              V   Y L+S   ++ S+PTLFNSGTRH Q+SSC+L   P D+L  ++  L + A L+
Sbjct: 194 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 253

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ VR  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 254 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 313

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 314 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 373

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+ AY   E           R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 374 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 428

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630
                VVHSSNLCTEI   +   ETAVCNLGS+NL A         D+++L +T+RTAV 
Sbjct: 429 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 488

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++    E I
Sbjct: 489 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 548

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S +LA+  G   +++ +   +GV   D  G+                 W  L+
Sbjct: 549 MLAAYETSADLAERNGPLPAWEKTRTAKGVLHPDHYGVEP----------AWPERWAALR 598

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+ T G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV++L
Sbjct: 599 ARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 658

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+  +GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 659 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 718

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR A          +           
Sbjct: 719 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 770

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             ++     +  S  +   CE CQ
Sbjct: 771 VQAAPDPEAVACSLENPESCEACQ 794


>gi|149916692|ref|ZP_01905194.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
 gi|149822409|gb|EDM81798.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
          Length = 792

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 308/808 (38%), Positives = 435/808 (53%), Gaps = 61/808 (7%)

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
              E   +GL  V  + + ++T +          L+  L  ++   I +EP+Y+K+ AR 
Sbjct: 29  ARAEGWTAGLDGVELERLFAQTRERAPADADRETLDELLARTAVGWIVEEPDYSKLAARI 88

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVY 280
           L   + RE  +                     F   +E   +  L +   ++F       
Sbjct: 89  LAGAIAREAASQGVTS----------------FLNSVETLHRLGLGNARALNFARAHAAT 132

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR 338
           L   L  E D  FEY GL+ ++DRY +    +R  +E PQ FFMRVA  LA+   E    
Sbjct: 133 LEAALDREGDRRFEYFGLRTVFDRYLMRHPKTRRVLETPQHFFMRVAAALAVDPDE---- 188

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
           AV  Y L S   ++ S+PTLFN+GT   QLSSCFL   P D L  I+    + A L+K+S
Sbjct: 189 AVALYGLFSRLDYLPSSPTLFNAGTHREQLSSCFLLDSPADHLVDIYERYTDVAKLSKFS 248

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  +  VR  G+ I  TNG S G++P+LK  + +  AVNQGG+RKGA C YLETWH 
Sbjct: 249 GGIGLAYHRVRSRGSLIGDTNGHSNGIVPWLKTLDASVAAVNQGGRRKGACCVYLETWHA 308

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ EFL+LR NTG++  R H++N ANWIPD FM+RV  + GW+LF P  V    DLYG+ 
Sbjct: 309 DLPEFLELRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFDPKTVRHFPDLYGEA 368

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QH 575
           F  AY   ER            + A  L+ +M+  L +TG+ W+ FKD CN    Q  + 
Sbjct: 369 FTRAYVEAERAGLA-----VATLPARELYARMMRTLAQTGNGWMCFKDRCNSTCNQTARP 423

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---------NQFDYDKLASTIR 626
              VH SNLCTEI   +S EETAVCNLGSINL  H             + D+ KL  ++ 
Sbjct: 424 GRTVHLSNLCTEIVEVTSPEETAVCNLGSINLGHHLRPIDGGGTQADWEVDWAKLGRSVT 483

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            AVR LD VID+N + +E A KSN   R +GLG MG    L  L + + SP A E+A   
Sbjct: 484 LAVRALDRVIDLNFYPLETAAKSNARWRPVGLGTMGLHDLLLRLGLDFDSPAARELARRV 543

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            E + FHA+  S +LA++ G + +F  +    G    D  G+               LPW
Sbjct: 544 AEHVYFHALRTSCDLARQHGPHPAFPETRAADGQLQFDLWGVEPGE----------DLPW 593

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           D L++ V + G+RNS  +A+APTATIA+I G  + I+P+  NL  +  +SG+F  VN +L
Sbjct: 594 DTLRRDVASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLVKRETLSGEFIQVNRYL 653

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           ++EL++  LWDEAM + LK  +GS+  I R+P+ L++   TA+E+    LI+ A+ R  +
Sbjct: 654 IDELRRLGLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWELPMRALIDMAAARGPF 713

Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           IDQ+QSLNL+++ P   +L  +Y  AW  GLKTTYYLRSR A+ + K+T+   + K    
Sbjct: 714 IDQSQSLNLFVESPDLTRLSAMYFYAWKAGLKTTYYLRSRPASGIAKATVDPANAKP--- 770

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                     +  +  S  +   CE CQ
Sbjct: 771 ------KQRSAEALACSLENPEACEACQ 792


>gi|302536806|ref|ZP_07289148.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
 gi|302445701|gb|EFL17517.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
          Length = 798

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 306/806 (37%), Positives = 438/806 (54%), Gaps = 45/806 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 25  LLRTLTELTADLPDTDPGRVAAAALRGRSASADEAELRGLATEAAAGLISEDPAYSRLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E                        F   +  G +  L+ +   +F   + 
Sbjct: 85  RLLTLAVADEAAGQGATS----------------FAESVAVGHREGLIADRTAEFVAAHA 128

Query: 282 A-------NDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKE 332
           A       + L    D  F + GL+ L+ RY L        IE PQ F +RVA GLA  +
Sbjct: 129 ARLDALVEHALAEGADDRFGFFGLRTLHSRYLLRHPITRQVIETPQYFMLRVACGLAEDD 188

Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQEN 390
           + +    V   Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + 
Sbjct: 189 SVQAVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQV 248

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   
Sbjct: 249 ARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAV 308

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +A W+LFSP +V +L
Sbjct: 309 YLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPEL 368

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            DLYG EF+ AY   E           + + A  L+ +M+  L +TG  W+TFKD  N  
Sbjct: 369 VDLYGDEFDAAYVKAEAAGLA-----KKTMPARDLYGRMMRTLAQTGQGWMTFKDASNRT 423

Query: 571 SPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           + Q      VVHSSNLCTEI   ++  ETAVCNLGS+NL A  A+ + D+ +L  T+RTA
Sbjct: 424 ANQTALPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVADGEMDWARLDETVRTA 483

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V  LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++ +  E
Sbjct: 484 VTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKALSTKISE 543

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A  AS +LA+  G   ++  +   QGV   D               R     WD 
Sbjct: 544 RIMLAAYEASCDLAERSGPLPAWAETRTAQGVLHPDHY----------ETERHWPERWDA 593

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+ R+   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN +LV 
Sbjct: 594 LRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVE 653

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +LKQ  +WD      L+   GS+     IP ++++++ TA+EI    LI+ A+ R  ++D
Sbjct: 654 DLKQLGVWDAQTREALRESSGSVQGFGWIPAEIRELYRTAWEIPQRGLIDMAAARTPYLD 713

Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           Q+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++          A P 
Sbjct: 714 QSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATKIARAASGAAAVPAAATPA 773

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
             P  +  +  +  S  +   CE CQ
Sbjct: 774 QLP-QALDAEALACSLENPESCEACQ 798


>gi|282861025|ref|ZP_06270090.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. ACTE]
 gi|282563683|gb|EFB69220.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. ACTE]
          Length = 803

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 300/799 (37%), Positives = 432/799 (54%), Gaps = 33/799 (4%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +    L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 32  LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +  E           +    +   + E      +        H  ++D     +
Sbjct: 92  RLLTLTIADEAAGQGAT----SFSASVAVGHREGLIA--DRTAAFVEQHAQVLD---ALV 142

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEK-EKR 338
              L    D  F Y GL+ L+ RY L    +R  IE PQ F +RVA GLA  E+ +    
Sbjct: 143 ERTLADGADDRFGYFGLRTLHSRYLLRHPHTRQVIETPQHFMLRVAAGLAEDESVRARDE 202

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
               Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 203 VAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 262

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH 
Sbjct: 263 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 322

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+G  
Sbjct: 323 DIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELTDLWGDA 382

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575
           F+ AY   E +         + + A  L+ +M+  L +TG  W+TFKD  N  + Q    
Sbjct: 383 FDAAYRAAEARGLA-----RKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 437

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
             VVHSSNLCTEI   +   ETAVCNLGS+NL A  +    D+++L +T+RTAV  LD V
Sbjct: 438 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGSIDWERLDATVRTAVTFLDRV 497

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +DIN +  E+A  SN   R +GLG MG Q     L +P+ SPEA  ++    E I   A 
Sbjct: 498 VDINFYPTEQAGTSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTRISERIMLAAY 557

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS +LA+  G   ++  +   +GV   D                     WD L+ R+  
Sbjct: 558 EASCDLAERSGPLPAWSETRAARGVLHPDHYATE----------LNWPERWDALRARIAK 607

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN +LV ELK+  +
Sbjct: 608 TGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEELKKLGV 667

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           WD      L+   GS+     IP+D++ ++ TA+EI    LI+ A+ R  ++DQ+QSLNL
Sbjct: 668 WDARTREALREASGSVQGFGWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNL 727

Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +L+ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++         +A        + 
Sbjct: 728 FLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARA---ASGRTASAALPAQQAQAP 784

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +  I  S  +   CE CQ
Sbjct: 785 DADAIACSLENPESCEACQ 803


>gi|254388986|ref|ZP_05004217.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814922|ref|ZP_06773565.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443294|ref|ZP_08218028.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702704|gb|EDY48516.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|218078698|emb|CAB90707.4| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327521|gb|EFG09164.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 810

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 305/802 (38%), Positives = 437/802 (54%), Gaps = 44/802 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + +  + L D     V +   +  + G   ++L      ++  LI ++P Y+++ A
Sbjct: 44  LLRTLTDLTADLPDTDPGRVAAAALRGRHPGSDAAELRGLATDAAAGLIAEDPAYSRLAA 103

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +  E  +                     F   +  G    L+ +    F     
Sbjct: 104 RLLTLTIGDEARSQGAVS----------------FSASVAVGHTEGLIADRTAAFVALHS 147

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +  + D  F Y GL+ LY RY L        +E PQ F +RVA GLA  +TE+ 
Sbjct: 148 ARLDALIDLDADDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVACGLAEDDTERA 207

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L     D+L  I+G   + A L+
Sbjct: 208 LDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYGRYHQVARLS 267

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 268 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 327

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +  W+LFSP +V +L DL+
Sbjct: 328 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFSPADVPELVDLW 387

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G EF+ AY   E           R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 388 GDEFDAAYRKAEAAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 442

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VHSSNLCTEI   +   ETAVCNLGS+NL A  +    D+++L +T+RTAV  L
Sbjct: 443 ALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGDIDWERLDATVRTAVTFL 502

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D V+DIN +  E+A +SN   R +GLG MG Q     L +P+ S EA  ++    E I  
Sbjct: 503 DRVVDINFYPTEQAGRSNTKWRPVGLGAMGLQDVFFQLRLPFDSAEARALSTRIAERIML 562

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  AS +LA+  G   +++ +   +GV   D  G          + +     W  L++R
Sbjct: 563 AAYEASADLAERHGPLPAWEKTRTARGVLHPDHYG----------VEQHWPERWAALRER 612

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V T GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VNS+LV ELK+
Sbjct: 613 VATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELKR 672

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             +WD      L+   GSI     +PD++++++ TA+EI    LI+ A+ R  +IDQ+QS
Sbjct: 673 LGVWDAQTREALRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAARTPYIDQSQS 732

Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           LNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT + ++           VPV    
Sbjct: 733 LNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGTAAAAPATVPV---- 788

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
                  +  S  +   CE CQ
Sbjct: 789 QQVPQDAVACSLENPESCEACQ 810


>gi|297202282|ref|ZP_06919679.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
 gi|197710198|gb|EDY54232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
          Length = 796

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 305/826 (36%), Positives = 430/826 (52%), Gaps = 66/826 (7%)

Query: 154 LISFNSK----RLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSES---DLETALIFS 205
               +       L   +    + L D     V +   +     G S     +L      +
Sbjct: 12  TTPVDEDGPGAALLRTLTALTADLPDADPGRVAAAALRGRSARGASAEMIAELRELATEA 71

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  LI ++P Y+++ AR L   +  E  +                     F   +  G +
Sbjct: 72  AAGLISEDPAYSRLAARLLTVSIAAEAASQGVTS----------------FTGSVAVGHR 115

Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320
             L+ +   +F       L   +  E D  F Y GL+ LY RY L        IE PQ F
Sbjct: 116 EGLIADRTAEFVRVHAERLDALVDTEADDRFGYFGLRTLYSRYLLRHPITRKVIETPQHF 175

Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            +RVA GLA                    Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L
Sbjct: 176 MLRVASGLADDTVLDSETGAHALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYL 235

Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              P D+L  I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  +
Sbjct: 236 LDSPKDELDSIYDRYHQVANLSKHAGGIGISYSRIRSRGSLIRGTNGHSNGIVPFLKTLD 295

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +  AVNQGG+RKGA   YLETWH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+R
Sbjct: 296 ASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRR 355

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +A W+LFSP +V +L DL+G+EF+ AY   E      E    R I A  L+ +M+  
Sbjct: 356 VNADAEWSLFSPADVPELVDLWGEEFDAAYRKAEA-----EGLARRTIPARDLYGRMMRT 410

Query: 553 LFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           L +TG+ W+TFKD  N  + Q       VHSSNLCTEI   +   ETAVCNLGS+NL A 
Sbjct: 411 LAQTGNGWMTFKDAANRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAF 470

Query: 611 FANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   D+++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q    
Sbjct: 471 VDTTSGDIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFF 530

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L +P+ SPEA  ++    E I   A  AS +LA+  G   +++ +   QGV   D    
Sbjct: 531 KLRLPFDSPEARALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTAQGVLHPDHYAT 590

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                     +      W  L++R+   G+RNS  +AIAPTATIA+I GV + I+P   N
Sbjct: 591 ----------DLAWPERWAALRERMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSN 640

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L+ +  +SG+F  VNS+LV ELK+  +WD      L+  +GS+     IP+D++ ++ TA
Sbjct: 641 LFKRETLSGEFLQVNSYLVAELKKLGVWDARTREALREANGSVQGFAWIPEDVRALYRTA 700

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +EI    LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR A
Sbjct: 701 WEIPQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPA 760

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           T +             A              +  S  +   CE CQ
Sbjct: 761 TRI----------ARAAQATVPVQQPAPEDAVACSLENPESCEACQ 796


>gi|254384640|ref|ZP_04999979.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
 gi|194343524|gb|EDX24490.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
          Length = 797

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 301/805 (37%), Positives = 437/805 (54%), Gaps = 47/805 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L +    ++  LI ++P Y+++ A
Sbjct: 28  LLRTLTELTADLPDTDPGRVAAAALRGRSAAADEAELRSLATEAAAGLISEDPAYSRLAA 87

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +R E           +    +   + E                 + ++     L
Sbjct: 88  RLLTLAVRDEAAGQGAT----SFSASVAVGHREGLIA---------DRTAAFVEAHAARL 134

Query: 282 ANDLKYER----DFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK 335
              ++Y      D  F + GL+ L+ RY L        +E PQ F +RVA GLA  E+ +
Sbjct: 135 DALVEYTLAEGADDRFGFFGLRTLHSRYLLRHPITRQVVETPQHFMLRVACGLAADESVQ 194

Query: 336 EKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAML 393
               V   Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L
Sbjct: 195 AVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARL 254

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLE
Sbjct: 255 SKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLE 314

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
           TWH D+EEFL+LR NTG+D+RRTH++N A+W+PD FM+RV  +A W+LFSP +V +L DL
Sbjct: 315 TWHADIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFMRRVNADADWSLFSPADVPELVDL 374

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +G +F+ AY   E           + + A  L+ +M+  L +TG  W+TFKD  N  + Q
Sbjct: 375 WGDDFDAAYRKAEADGLA-----RKTMPARDLYGRMMRTLAQTGQGWMTFKDASNRTANQ 429

Query: 574 Q--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAV 629
                 VVHSSNLCTEI   ++  ETAVCNLGS+NL A       + D+++L  T+RTAV
Sbjct: 430 TAEPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVLTETGEIDWERLDETVRTAV 489

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPEA  ++ +  E 
Sbjct: 490 TFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLKLPFDSPEAKALSTKLSER 549

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A  AS +LA+  G   +++ +   +GV   D                     WD L
Sbjct: 550 IMLAAYEASCDLAERSGPLPAWEQTRTARGVLHPDHY----------DTELNWPERWDAL 599

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + RV   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN +LV E
Sbjct: 600 RARVAESGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEE 659

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK+  +WD      L+   GS+     IP ++++++ TA+EI    LI+ A+ R  ++DQ
Sbjct: 660 LKKLGVWDAQSREALREASGSVQGFGWIPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQ 719

Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           +QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +             A PV 
Sbjct: 720 SQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATKI-------ARAAQAATPVA 772

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
            P +   +  +  S  +   CE CQ
Sbjct: 773 LPQAVVDAEALACSLENPESCEACQ 797


>gi|302558497|ref|ZP_07310839.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302476115|gb|EFL39208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 796

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 300/804 (37%), Positives = 429/804 (53%), Gaps = 51/804 (6%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E++L      ++  LI ++P Y+++ A
Sbjct: 33  LLRTLTELTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAA 92

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278
           R L   +R E  +                     F   +  G +  L+ +    F     
Sbjct: 93  RLLTIGIRAEAASQGVTS----------------FTGSVATGHREGLIADRTAAFVRLHA 136

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335
             L   +    D  F Y GL+ L+ RY L        +E PQ F +RVA GLA  +  + 
Sbjct: 137 ERLDALVDTRADDRFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVAAGLAEDDGARS 196

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLA 394
                  Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L     D+L  I+    + A L+
Sbjct: 197 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLS 256

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLET
Sbjct: 257 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 316

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV  +A W+LFSP +V  L DL+
Sbjct: 317 WHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFSPADVPGLVDLW 376

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           G+EF+ AY   E Q         R + A  L+ +M+  L +TG+ W+TFKD  N  + Q 
Sbjct: 377 GEEFDAAYRAAEAQGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 431

Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVR 630
                VVHSSNLCTEI   +   ETAVCNLGS+NL A         D+++L  T+RTAV 
Sbjct: 432 AEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQAAGDLDWERLDETVRTAVT 491

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD V+DIN +  E+A +SN   R +GLG MG Q  L  L +P+ SPEA  ++    E I
Sbjct: 492 FLDRVVDINYYPTEQAGRSNARWRPVGLGAMGLQDVLFRLRLPFDSPEAKALSTRIAERI 551

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A   S +LA+  G   +++ +   +GV   D                T    W  L+
Sbjct: 552 MLAAYETSADLAERSGPLPAWEKTRTARGVLHPDHY----------DTELTWPERWAALR 601

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            R+  +GMRNS  +AIAPTATIA+I G  + I+P   NL+ +  +SG+F  VNS+LV +L
Sbjct: 602 ARIAAVGMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQVNSYLVEDL 661

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+  +WD      L+   GS+ +   IP+D+++++ TA+EI    LI+ A+ R  ++DQA
Sbjct: 662 KRLGVWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQA 721

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR A             +  A     
Sbjct: 722 QSLNLFLETPTIGKLSSMYVHAWKQGLKTTYYLRSRPA---------TRIARAAARTTVP 772

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
             +      +  S  +   CE CQ
Sbjct: 773 VQAGPDPEAVACSLENPESCEACQ 796


>gi|257792031|ref|YP_003182637.1| ribonucleotide-diphosphate reductase subunit alpha [Eggerthella
           lenta DSM 2243]
 gi|257475928|gb|ACV56248.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           lenta DSM 2243]
          Length = 845

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 272/915 (29%), Positives = 426/915 (46%), Gaps = 117/915 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           +Q+ KRNG V +++  KI RA+  AF +V            +    L  +    +     
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASVGKVL------DDEEADRLIARIERAMASAEQ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +ED+QD VE +LM++ H++  + Y+LYRE+R+  R A+    +  P  P L  
Sbjct: 55  GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRVARERLCAQLPSVPALPG 114

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++          +            L  +S+K              ++  L   L+ ++ 
Sbjct: 115 VLASVQKEFPGEE----------YELAHLSAKFQSFAK-----PDAADGQLLAMLVKAAV 159

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + AR L+ +  R +   +  +  +    ++  L         EEG+  
Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETFAQKVAFL--------TEEGLYG 211

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
             + +     +L   A  +   R+  F Y GLQ+L DRY +    G+ +E PQ  F+ +A
Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271

Query: 326 MGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA++E   E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 272 LHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L
Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+   Y      A   +    R I    + R ++    ET
Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARIKK----RAIPIKDVIRLIIKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596
           G P+   +D  N  +P +H G+++ SNLCTEI  N  + E                    
Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567

Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L      +  D  +LA    +AVR LDNVID+N   +  A+ +N  +
Sbjct: 568 PGAFVVCNLASLSLGHI---DMDDPHELAHVTESAVRALDNVIDLNFFPVPYAEINNRQY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+G
Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +  D        R            W EL + V   G+RN   +A+APT++ +
Sbjct: 685 SGWQTGEYFRD--------RGLTDGR------WAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 820 WEEGVKTIYYVRSKS 834


>gi|320008646|gb|ADW03496.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           flavogriseus ATCC 33331]
          Length = 797

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 305/816 (37%), Positives = 436/816 (53%), Gaps = 47/816 (5%)

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211
           G         L   +    + L D     V +   +       E++L +    ++  LI 
Sbjct: 16  GRTTDAPGTALLRTLTGLTADLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLIS 75

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           ++P+Y+++ AR L   +  E                        F   +  G +  L+ +
Sbjct: 76  EDPSYSRLAARLLTRAVADEAAGQGAVS----------------FSASVAVGHREGLIAD 119

Query: 272 SMMDFD------LVYL-ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
              +F       L  L    L    D  F Y GL+ L+ RY L         E PQ F +
Sbjct: 120 RTAEFVTLHAAALDALVDRALADGADDRFGYFGLRTLHSRYLLRHPLTRQVTETPQHFML 179

Query: 323 RVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380
           RVA GLA   +E+  +     Y L++   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L
Sbjct: 180 RVAAGLAEDTSERALEEVAALYGLMNRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPMDEL 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I+    + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQ
Sbjct: 240 DSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQ 299

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG+RKGA   YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV  +  W+
Sbjct: 300 GGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTQWS 359

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP +  +L DL+G EF+ AY   E      +    R + A  L+ +M+  L +TG  W
Sbjct: 360 LFSPADAPELVDLWGDEFDAAYRAAEA-----KGLARRTLPARELYGRMMRTLAQTGQGW 414

Query: 561 ITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           +TFKD  N  + Q      VVHSSNLCTEI   +   ETAVCNLGS+NL A  A    D+
Sbjct: 415 MTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVAEGTIDW 474

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L +T+RTAV  LD V+DIN +  E+A +SN   R +GLG MG Q     L +P+ SPE
Sbjct: 475 ERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPE 534

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  ++ +  E I   A  AS +LA+  G   ++  +   +GV   D              
Sbjct: 535 ARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHY----------DT 584

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  WD L+ RV   GMRNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+
Sbjct: 585 ELHWPERWDALRARVARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  VN++LV+ELK+  +WD      L+   GS+     IP+D++ ++ TA+EI    LI+
Sbjct: 645 FLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLID 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            A+ R  ++DQ+QSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT +       
Sbjct: 705 MAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIA---RAA 761

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                 A  V    S+  +  +  S  +   CE CQ
Sbjct: 762 SGQAPAAATVPVQASAPDADALACSLENPESCEACQ 797


>gi|269860694|ref|XP_002650066.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066497|gb|EED43976.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 778

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 250/790 (31%), Positives = 415/790 (52%), Gaps = 43/790 (5%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
           ++ ++  +   +    +   ++ +++       + T+I   P+Y K+ A  L++ L    
Sbjct: 21  IEGLNLPLFFDKVSSGLALDMTPTEMTKYCSEIAATMITIHPSYNKLAAIILIKHLHENT 80

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
             T   K           +Y +      ++ +   +++      ++    + +KYERD+ 
Sbjct: 81  FNTFSDKM----------MYIQQEKNIFDDHIMELIIN------NMNVYNSIVKYERDYN 124

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F+Y  L  L   Y + +N + IE PQ  +MRVA+ L   +    +   + Y+LLS  ++ 
Sbjct: 125 FDYFALISLQKSYQIQVNNTVIERPQDIYMRVAIELHGDDFNNVQ---KTYDLLSQQYYT 181

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPTL+NS  +  QL+SCFL  +  D + GIF  ++E A+ +K SGG+G   + +R   
Sbjct: 182 HATPTLYNSCFKKNQLASCFLLGMKSDTIAGIFDTIKEAAIYSKLSGGVGLHISNLRCDK 241

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC-AYLETWHIDVEEFLDLRKNTG 470
           + +  T G S+G+IP +K+ ND+   +NQGG R+ A C  YLE WH D+ +FLDLRKNTG
Sbjct: 242 SQLVTTGGYSKGIIPIVKLINDSMKYINQGGARRCATCAFYLEPWHKDILKFLDLRKNTG 301

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +  R  D  TA WI DLFM+RV +N  W+LF P+    L D++G +F   Y  YE   +
Sbjct: 302 IEEERARDSFTALWINDLFMERVEKNEMWSLFDPNIAKGLQDVWGDQFNKLYAYYEETIE 361

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           R        I A  LW++++    ETG P++ +KD CN  S Q ++G + SSNLC EI  
Sbjct: 362 RT------TIPAQKLWKEIICSQIETGTPYMCYKDTCNRYSNQNNIGTIKSSNLCAEIIQ 415

Query: 591 NSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            S S+ TAVCNL SI L  +        N  FD+ +L + ++     ++ +ID +    E
Sbjct: 416 YSDSDITAVCNLASICLPKYVKINSTTSNYYFDFQELYTVVKIVTYNMNKMIDKSAFPTE 475

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           ++KK N   R IG+G+ G      L+   + S EA ++     E + F A+ AS ELAQ+
Sbjct: 476 ESKKGNSLFRPIGIGVQGLADVFFLMGYSFESKEARDLNKMIFETLYFGALEASCELAQK 535

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            G YS ++GS++ QG+F  +         +E+    +    W+EL+ ++KT G+RNS  +
Sbjct: 536 HGPYSYYQGSMYSQGIFHFEKFCEGRINVNEIL---SGMWNWEELRIKMKTYGVRNSLTL 592

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A+ PTA+ + ICG S+ I+P   N++ +   +G+F +VN +L+ +L +  LW+  +   +
Sbjct: 593 ALMPTASTSQICGNSECIEPIQSNIFTRRTFAGEFQIVNKYLMKDLIKLGLWNNEIKQLI 652

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
             ++GSI  I  IP  +K ++ T +E+    +++ A  RQ ++DQ+QSLNL++ EP+   
Sbjct: 653 IEYEGSIQKIPIIPQHVKDLYKTVWELKMKSVLDMAIDRQAFVDQSQSLNLFVKEPTYGI 712

Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           L  ++   W   LKT  YYLR+       K T+         + +   +S   S      
Sbjct: 713 LSSMHFYGWKNKLKTGMYYLRTCPLAKAIKFTVDKE------LILKTLSSFKDSENDKKL 766

Query: 944 CTSDTECEVC 953
              +  CE C
Sbjct: 767 NKENDYCEGC 776


>gi|313903042|ref|ZP_07836437.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466766|gb|EFR62285.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter subterraneus DSM 13965]
          Length = 930

 Score =  571 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 313/752 (41%), Positives = 451/752 (59%), Gaps = 20/752 (2%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE  L+ ++   + ++P + +V  R  L +L R+VL      P++         Y   F 
Sbjct: 83  LEELLVQAATQNLHRDPEFERVAVRARLRQLYRQVLGEPVPGPER---------YRAAFP 133

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
            YI  GV    L E ++ FDL  LA  L+ ERD +  ++GL  L DRY +    SR  +E
Sbjct: 134 AYIRRGVACGALDERLLAFDLDELAGALRPERDESLPFIGLVTLADRYLVREPESRRLLE 193

Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  FMRVAMGLAL E    +   A+ FY  +S+F ++ STPTLFN+GT H QLSSC+L
Sbjct: 194 TPQYLFMRVAMGLALAEEPARRVHWALRFYEFMSTFRYLPSTPTLFNAGTPHHQLSSCYL 253

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  A  +   LAKY+GG+G   T +R  G+ + G NG+S GVIPF+   + 
Sbjct: 254 ADVHDSMDHILEAAGDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFIHYYDA 313

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              AVNQGG+R+G +  YLE WH+++E FLDL++N+GD   R H +NTA WIPD F++RV
Sbjct: 314 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 373

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLT 551
                W LF P  V +L + +G  F  AY    RQA+ GE+  + ++++ A  L+R++L 
Sbjct: 374 EAGEPWYLFDPAYVPELPERFGAAFRDAYAARIRQAEAGELPARAWKRVDARQLFREILA 433

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            L ET HPW+ FKD  N+RS     GV+HSSNLCTEI L ++++E AVCNL S+NL  H 
Sbjct: 434 TLQETSHPWLVFKDAGNVRSLLP--GVIHSSNLCTEIFLPTTADEVAVCNLASVNLARHL 491

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D++ LA+T+  A+R LDNVID+N + IEKA++SN  HR +GLG+MGF  A++ L 
Sbjct: 492 GPAGIDWEALAATVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 551

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + YA PEA ++AD  +EFIS+HAI AS  LA ERG++ SF  S W +G  P+D++  L E
Sbjct: 552 LGYADPEAADLADRVLEFISYHAILASHRLAGERGSFPSFAESGWARGKVPLDTLADLEE 611

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++R++RL W+ ++ RV+  GMRN   +A+APTATI+ I G + S+DP Y N++
Sbjct: 612 ERGRPVTVDRSARLDWEGVRARVRQ-GMRNGAVLAVAPTATISLIAGTTPSLDPPYSNVF 670

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG F  VN  LV EL+QR LW E +   +    G +  I  +P D++  + TA++
Sbjct: 671 SRQTLSGKFLEVNRVLVEELRQRGLW-EQVRDRIVEERGDLQPIAELPADIRHRYPTAYQ 729

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + P   +E A+R QKW+D   S NL+L +     ++ +YR+AW  GLK+TYYL       
Sbjct: 730 VPPEAYLEIAARAQKWVDMGISRNLFLADRDLGAMERVYREAWRRGLKSTYYLFMAPRMY 789

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            E ST++    +       D  +   S     
Sbjct: 790 AEPSTVRVNKARRKLRWNLDEPAPAGSSAGAR 821


>gi|311898298|dbj|BAJ30706.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Kitasatospora setae KM-6054]
          Length = 804

 Score =  571 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 305/807 (37%), Positives = 442/807 (54%), Gaps = 41/807 (5%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L  ++ +  + L  V    V +   +  + G   ++L    + ++ ++I ++P Y+K+ A
Sbjct: 25  LLRLLTDRSTDLPQVDPGHVAAAALRGRHAGSDFAELRGLAVEAAASMIAEDPQYSKLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L  ++R E  T        +    +   + E                 + +       
Sbjct: 85  RLLALEIRDEAATQ----QVTSFSSSVAVGHAEGL---------IGDATAAFVAAHADLF 131

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLA-LKETEKEKR 338
            + +    D  FEY GL+ +  RY L        +E PQ F +RVA GLA     E  + 
Sbjct: 132 DSLVDEAGDDRFEYFGLRTVQSRYLLRHPITRKVVETPQHFLLRVAAGLAVGTSEESVRE 191

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397
             E Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K++
Sbjct: 192 VAELYTLMSRLEYLTSSPTLFNSGTRHPQMSSCYLLDSPLDNLDSIYNRYAQIARLSKHA 251

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G  ++ +R  G+ I GTNG+S G++PFL+  + +  AVNQGG+RKGA C YLETWH 
Sbjct: 252 GGIGLSYSRIRSRGSLIRGTNGQSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLETWHA 311

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV  NA W+LFSP +V +L DL+G +
Sbjct: 312 DIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFSPADVPELVDLWGAD 371

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575
           F+ AY   E        K  R I A  L+ +M+  L +TG+ W+TFKD  N  + Q    
Sbjct: 372 FDEAYVKAELA-----GKAVRTIPAQTLYARMMRTLAQTGNGWMTFKDASNRAANQTALP 426

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--------NQFDYDKLASTIRT 627
              VHSSNLCTEI   +   ETAVCNLGS+NL AH A         N  D+D+L +T+RT
Sbjct: 427 GRTVHSSNLCTEILEVTDDSETAVCNLGSVNLGAHVAPGATAADLLNAMDWDRLDATVRT 486

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  LD VIDIN +   +A  SN   R +GLG+MG Q     L I + S EAV ++    
Sbjct: 487 AVTFLDRVIDINFYPTTEAGTSNSRWRPVGLGVMGLQDVFFQLRIDFDSAEAVALSTLIA 546

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E I   A   S +LA+  G + ++  +   +G   +D  G         A N      WD
Sbjct: 547 ERIMLTAYERSADLAERFGRHEAYGETRAARGQLHVDHFG---------AANPQWTERWD 597

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+ R+  +G+RNS  +AIAPTATIA+I GV + I+P   NL+ +  +SG+F  VN +LV
Sbjct: 598 ALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNPYLV 657

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            ELK+  +WD+     L+  +GSI     +P +++ ++ TA+E+    LI+ A+ RQ +I
Sbjct: 658 RELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRSLYRTAWELPQRALIDLAAARQPYI 717

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           DQ+QSLNL++  P+  KL  +Y  AW +GLKTTYYLRSR AT + ++             
Sbjct: 718 DQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKTTYYLRSRPATRIAQAAPGAARTAAPVPV 777

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            T   S      I  S  +   CE CQ
Sbjct: 778 QTPTLSQAEQDAIACSLENPESCEACQ 804


>gi|302521844|ref|ZP_07274186.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
 gi|302430739|gb|EFL02555.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
          Length = 790

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 302/810 (37%), Positives = 434/810 (53%), Gaps = 43/810 (5%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
                   L   + E  + L D     V +   +       E++L      ++  LI ++
Sbjct: 15  EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y+++ AR L   +  E                        F   +  G +  L+ +  
Sbjct: 75  PAYSRLAARLLALAIVEEAAGQGAS----------------GFAASVAVGHREGLIGDRT 118

Query: 274 MDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGL 328
            +F       L   +    D  F Y GL+ LY RY L        +E PQ F +RVA GL
Sbjct: 119 AEFVAAHAARLDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGL 178

Query: 329 ALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386
           A  ++          Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+  
Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKG
Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +
Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPAD 358

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V +L DL+G+EFE AY   E      +    + I A  L+ +M+  L +TG  W+TFKD 
Sbjct: 359 VPELTDLWGEEFEAAYRAAEA-----KGLARKTIPARELYGRMMRTLAQTGQGWMTFKDH 413

Query: 567 CNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            N  + Q      VVHSSNLCTEI   +   ETAVCNLGSINL A   N   D+++L  T
Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDET 473

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTAV  LD V+DIN +  ++A  SN   R +GLG MG Q     L +P+ S EA  ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I   A  AS +LA++ G   +++ +   +GV   D             + RT   
Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPE 583

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+ R+   GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN 
Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK+  +WD      L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R 
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT +             
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGSPAAE 760

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           A P+    S   +  I  S  +   CE CQ
Sbjct: 761 AAPIPVQQSVPDAEAIACSLENPESCEACQ 790


>gi|291303012|ref|YP_003514290.1| ribonucleoside-diphosphate reductase subunit alpha [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572232|gb|ADD45197.1| ribonucleoside-diphosphate reductase, alpha subunit [Stackebrandtia
           nassauensis DSM 44728]
          Length = 771

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 311/804 (38%), Positives = 448/804 (55%), Gaps = 53/804 (6%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218
              +  +V    SGL DV ++ V        + G +E++L    +  + +L+  EP Y++
Sbjct: 13  IDHVVQVVRRLASGLADVEAETVSGPVVAGNWPGATEAELRLRAVEVAASLVATEPGYSR 72

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-- 276
           + AR L E +  EV  +            M   Y             A L+ + + +F  
Sbjct: 73  LAARLLSEHIGDEVRLSDVGC----FSEAMSAGYR------------AGLISDGLWEFVS 116

Query: 277 -DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333
            +   L   +    D  FEY G++ +YDRY L    +R+  E PQ FFMRVA GL+    
Sbjct: 117 SNAPKLDALVDDGADDRFEYFGIRTVYDRYLLRHPETRLVLETPQHFFMRVACGLSET-- 174

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAM 392
                  E Y LLS+  ++ S+PTLFN+GTR  QLSSCFL   P D+L  I+    + A 
Sbjct: 175 --VSDVTELYGLLSTLSYLPSSPTLFNAGTRRSQLSSCFLLDSPRDELESIYDRYSQAAR 232

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+KY+GG+G  W+ +R  G+ I GTNG S G++P+L+  + +  AVNQGG+RKGA C YL
Sbjct: 233 LSKYAGGIGMAWSRIRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYL 292

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
            TWH D+EEFL+LR NTG + RRTH++N ANWIPD FM+RV  +  W+LF P +V +L D
Sbjct: 293 ATWHADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFDPKDVPELVD 352

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           L+G+EFE AY + E        K  R +SA  L+ +M+  L +TG+ W+TF D  N    
Sbjct: 353 LWGEEFEKAYRDAEAA-----GKAARVVSARDLYGRMMRTLAQTGNGWMTFADISNRTCN 407

Query: 573 QQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           Q      VVH SNLCTEI   +S  ETAVCNLGS+NL AH  +  FD+++LA ++RTAV 
Sbjct: 408 QTAVPGNVVHLSNLCTEILEVTSDAETAVCNLGSVNLAAHCVDGGFDFERLARSVRTAVT 467

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD  ID+  +   +A+K+N   R IGLGLMG       L +P+ S EA E+++   E I
Sbjct: 468 FLDRSIDLTYYPTAEAEKANRRWRPIGLGLMGMADVFFKLRMPFDSAEARELSNRISETI 527

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  A   S +LA   GA+ S+  +   +GV  +D                T    W  ++
Sbjct: 528 ALAAYETSADLAARLGAHPSYDDTRAARGVLHVDHF---------ADAAVTDPDAWQRVR 578

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + V   G+RNS  +AIAPTATIA I G S+  +P   N++ +  +SG+F  VN +L+ +L
Sbjct: 579 ELVAANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFIQVNKYLIADL 638

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           KQR LW+E +   +   +GSI +I  IP +L++++ TA+E+    LI+ A+ R  +IDQ+
Sbjct: 639 KQRGLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLAAGRTPFIDQS 698

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           QSLNL++  P+  KL  +Y  AW  GLKTTYYLRSR AT + ++T+            + 
Sbjct: 699 QSLNLFMAAPTIGKLSSMYAYAWRSGLKTTYYLRSRPATRINQTTV-----------ASA 747

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
           P     +  I  S  +   CE CQ
Sbjct: 748 PEVDAEAEAIACSLENPETCEACQ 771


>gi|253567023|ref|ZP_04844474.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|251944147|gb|EES84656.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
          Length = 839

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 274/916 (29%), Positives = 435/916 (47%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   ++      + ++
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
                D T   ++   L       C                      +  S+   ALI +
Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG+
Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
               +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++ 
Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMVKEDLNQPWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L    E
Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N ++ E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N  
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W+ L  RV   GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAARVAENGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++  +Y  
Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTVYYVRSKS 828


>gi|318060205|ref|ZP_07978928.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actG]
 gi|318077112|ref|ZP_07984444.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actF]
          Length = 767

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 301/800 (37%), Positives = 433/800 (54%), Gaps = 43/800 (5%)

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223
             + E  + L D     V +   +       E++L      ++  LI ++P Y+++ AR 
Sbjct: 2   RTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISEDPAYSRLAARL 61

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVY 280
           L   +  E                        F   +  G +  L+ +   +F       
Sbjct: 62  LALAIVEEAAGQGAS----------------GFAASVAVGHREGLIGDRTAEFVAAHAAR 105

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337
           L   +    D  F Y GL+ LY RY L        +E PQ F +RVA GLA  ++     
Sbjct: 106 LDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVD 165

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396
                Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+    + A L+K+
Sbjct: 166 EVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKH 225

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           +GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKGA   YLETWH
Sbjct: 226 AGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWH 285

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +V +L DL+G+
Sbjct: 286 SDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGE 345

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574
           EFE AY   E      +    + I A  L+ +M+  L +TG  W+TFKD  N  + Q   
Sbjct: 346 EFEAAYRAAEA-----KGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAE 400

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
              VVHSSNLCTEI   +   ETAVCNLGSINL A   N   D+++L  T+RTAV  LD 
Sbjct: 401 PGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDR 460

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           V+DIN +  ++A  SN   R +GLG MG Q     L +P+ S EA  ++    E I   A
Sbjct: 461 VVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAA 520

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS +LA++ G   +++ +   +GV   D             + RT    W+ L+ R+ 
Sbjct: 521 YEASADLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPERWEALRARIA 570

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN +LV +LK+  
Sbjct: 571 RSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLG 630

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           +WD      L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R  ++DQ+QSLN
Sbjct: 631 VWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLN 690

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           L+++ P+  KL  +Y  AW  GLKTTYYLRSR AT +             A P+    S 
Sbjct: 691 LFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGSPAAEAAPIPVQQSV 747

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             +  I  S  +   CE CQ
Sbjct: 748 PDAEAIACSLENPESCEACQ 767


>gi|333024514|ref|ZP_08452578.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
 gi|332744366|gb|EGJ74807.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
          Length = 790

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 303/810 (37%), Positives = 435/810 (53%), Gaps = 43/810 (5%)

Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
                   L   + E  + L D     V +   +       E++L      ++  LI ++
Sbjct: 15  EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P Y+++ AR L   +  E                        F   +  G +  L+ +  
Sbjct: 75  PAYSRLAARLLALAIVEEAAGQGAS----------------GFAASVAVGHREGLIGDRT 118

Query: 274 MDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGL 328
            +F       L   +    D  F Y GL+ LY RY L        +E PQ F +RVA GL
Sbjct: 119 AEFVAAHAARLDALVDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGL 178

Query: 329 ALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386
           A  ++          Y L+S   ++ S+PTLFNSGTRHPQ+SSC+L   P D+L  I+  
Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K++GG+G  ++ +R  G+ I GTNG S G++PFLK  + +  AVNQGG+RKG
Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A   YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV  +A W+LFSP +
Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPAD 358

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
           V +L DL+G+EFE AY   E      +    + I A  L+ +M+  L +TG  W+TFKD 
Sbjct: 359 VPELTDLWGEEFEAAYRAAEA-----KGLARKTIPARELYGRMMRTLAQTGQGWMTFKDH 413

Query: 567 CNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            N  + Q      VVHSSNLCTEI   +   ETAVCNLGSINL A   N   D+++L  T
Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDET 473

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +RTAV  LD V+DIN +  ++A  SN   R +GLG MG Q     L +P+ S EA  ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I   A  ASV+LA++ G   +++ +   +GV   D             + RT   
Sbjct: 534 RIAERIMLAAYEASVDLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPE 583

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W+ L+ R+   GMRNS  +AIAPTATIA+I GV + ++P   NL+ +  +SG+F  VN 
Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +LV +LK+  +WD      L+  +GS+     IP++++ ++ TA+E+    LI+ A+ R 
Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703

Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++DQ+QSLNL+++ P+  KL  +Y  AW  GLKTTYYLRSR AT +             
Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGAPAAE 760

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           A P+    S   +  I  S  +   CE CQ
Sbjct: 761 AAPIPVQQSVPDAEAIACSLENPESCEACQ 790


>gi|265764335|ref|ZP_06092903.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           sp. 2_1_16]
 gi|263256943|gb|EEZ28289.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           sp. 2_1_16]
          Length = 839

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 272/916 (29%), Positives = 434/916 (47%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   ++      + ++
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
                D T   ++   L       C                      +  S+   ALI +
Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG+
Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
               +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++ 
Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L    E
Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N ++ E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N  
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASTDLAKEKGRYEYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W+ L  +V   GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++  +Y  
Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTVYYVRSKS 828


>gi|53713985|ref|YP_099977.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis YCH46]
 gi|60682186|ref|YP_212330.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis NCTC 9343]
 gi|52216850|dbj|BAD49443.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           fragilis YCH46]
 gi|60493620|emb|CAH08409.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Bacteroides fragilis NCTC 9343]
          Length = 839

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 272/916 (29%), Positives = 434/916 (47%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   ++      + ++
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
                D T   ++   L       C                      +  S+   ALI +
Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG+
Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
               +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++ 
Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L    E
Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N ++ E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N  
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W+ L  +V   GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++  +Y  
Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTVYYVRSKS 828


>gi|15290502|gb|AAK92209.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           fragilis 638R]
 gi|301163664|emb|CBW23218.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Bacteroides fragilis 638R]
          Length = 839

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/916 (29%), Positives = 434/916 (47%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F +   + +       +II ++ E+    +    K
Sbjct: 1   MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +   ++      + ++
Sbjct: 52  DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111

Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
                D T   ++   L       C                      +  S+   ALI +
Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++         ++ + +++ L         EEG+
Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323
               +  +    ++   A  +  +RD  F Y GL +L  RY +        E  Q  ++ 
Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  E+     +FY+LLS      +TPTL N+   + QLSSCF+ T+PD L G
Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTIPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K   +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +        +    R IS   + R +L    E
Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N ++ E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +N  
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL + +I + S E +   D   E I++ AI AS +LA+E+G Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W+ L  +V   GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V       L  +  W                
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A+ +D  W I +A  RQ  IDQ+QSLNLY+ +E + +++  +Y  
Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTVYYVRSKS 828


>gi|288800287|ref|ZP_06405745.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332500|gb|EFC70980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 839

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 280/916 (30%), Positives = 444/916 (48%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG V  +D +KI+ AI K+F +V  +          +I  + +     +  H+ 
Sbjct: 1   MEIIKRNGNVEQYDKNKIAVAIQKSFASVGTEVNIV------LINEMVDAVERFIETHSD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS---KSDAPIAPKL 145
              + ++E IQDQVE +LMQ+G +   + Y+L+R +R++ R A ++      D  + P L
Sbjct: 55  ---MRNVESIQDQVEKTLMQNGFYDEAKSYILFRFQRTERRNAINNIVADAEDEDLKPIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +  D T + ++   L    +  C                    D + ++D  +AL+ +
Sbjct: 112 RKISSDYTSVEYSLLLLSDKFKSFCK-------------------DDMKQADKLSALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  +  +E PN+  + AR L  KL R +          + + +++ L         +E +
Sbjct: 153 AVEMTTQEAPNWEFIAARLLSYKLNRSIAAFEDSVGVHSFYDKLRYL--------TDERL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               +  S    ++   A  +K ER+    Y GL +L  RY +   N   IE  Q  ++ 
Sbjct: 205 YGDYILASYSPEEIAQAATFIKEERNDLLNYSGLDLLMKRYLIRTYNNKPIESIQEMYLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++     +FY++LS      +TPTL N+     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAINEKEDRMLWVNKFYDILSKLEVTMATPTLSNARKPFHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAQVSKFGGGMGMYFGKVRAAGGKIRGFKGAAGGVVRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQEDINQPWH 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +    A        R +S   + R +L    E
Sbjct: 445 LFCPNEILSIKGYCLEDYYGEEWEKRYIDCVSDARLTR----RTLSVKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N S  E                   
Sbjct: 501 TGTPFTFNRDHVNKANPNGHKGMIYCSNLCTEIAQNMSEIESVSTEVKTDDGDTVVVRAS 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         +  +L   +RT +R LDNVIDIN + +  A+ +N  
Sbjct: 561 KPGDFVVCNLASLSLGHL---PLENESELTDVVRTVIRALDNVIDINFYPLPYAQITNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R++GLG+ G+  AL +  I + S E ++  D+  E I+  A+ AS ++A+++G+Y  F+
Sbjct: 618 YRSLGLGVSGYHHALAVRGIKWESQEHLDFVDKVFETINRAAVEASSDIAKQKGSYKYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G              +       +   W  L  +VK  GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------EYFTKRGYTSPEWTALAAKVKEQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  Q  +++         V      EL  R  W                
Sbjct: 724 SIIAGTTAGTDPVMQRFFLEEKKGAMLPRVAP----ELSDRTFW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++ +A+ ID  W + +A  RQ+ IDQAQS NLY+ ++ S ++L  +Y  
Sbjct: 764 -----------VYKSAYNIDQQWTVRAAGVRQRHIDQAQSQNLYITNDFSMRQLLELYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWRSGVKTIYYVRSKS 828


>gi|257456710|ref|ZP_05621900.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii
           ATCC 35580]
 gi|257445903|gb|EEV20956.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii
           ATCC 35580]
          Length = 849

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 274/914 (29%), Positives = 447/914 (48%), Gaps = 111/914 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR-SIRVQDIIKNLTEQTVTRLLQHN 87
           + +IKRNG   +++  KI+ A+  AF +V G  A + +     +++ +T +    + + +
Sbjct: 1   MDIIKRNGEREAYNAEKITLAMQAAFNSVTGAEAQQKNSDTGALLRQMTAEIEADIYELS 60

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           K+   V +E IQD VE +L++   +   + ++LYR E++  R A+    +   +   L +
Sbjct: 61  KNGSPVQVETIQDLVEKTLIEHNRYAEVKNFILYRVEQTKKRDARRAIAAHFTLIDILPV 120

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           +         +   L ++  +               E+++     ++E++L T LI ++ 
Sbjct: 121 LTRIQQDFPDDQYSLTLLFHK--------------FESFRK--PDMTEAELLTLLIKAAV 164

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + ARFL+     ++ T + K+  ++ + ++  L         E+G+  
Sbjct: 165 ELTAQEAPRWEFIAARFLMLDFSGKLKTELEKRNIRSFYDKLTYLE--------EKGLYG 216

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325
             +       +L      +   ++  F Y GL +L  RY +   G   +E PQ  F+ +A
Sbjct: 217 AYIRAGYSKEELEQAYAYIDNSKNDLFTYSGLDLLLRRYVISTRGHIPLETPQEMFLGIA 276

Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           + LAL E  ++ +    FY +LSS     +TPTL N+   + QLSSCF+ TVPD L GI+
Sbjct: 277 LHLALHEQKDRMEWVRRFYLMLSSLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIY 336

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   A ++K+ GG+G  +  VR +GA I G  G + GVI ++K+ANDTAVAV+Q G R
Sbjct: 337 RSIDNFAKISKFGGGMGLYFGKVRAVGAPIRGFQGAAGGVIRWIKLANDTAVAVDQLGVR 396

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
           +G+V  YL+ WH DV EFL LR N GDDR + HD+  A   PDLF + V ++  A W L 
Sbjct: 397 QGSVAVYLDVWHKDVPEFLQLRTNNGDDRMKAHDVFPAVCCPDLFWRTVDEDIGASWYLM 456

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P E+       L D YG+E+E  Y++        +    R+I    L R +L    ETG
Sbjct: 457 CPHEILTVKGYALEDFYGEEWEKRYKDCINDNRISK----REIPVKELVRLILKSAVETG 512

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------- 596
            P+I  +D  N  +P  H G+++SSNLCTEI  N S                        
Sbjct: 513 TPFIFNRDHANRANPNGHKGMIYSSNLCTEIAQNMSPIHAVNTEIQTQDGETVVVTVTKP 572

Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
               VCNL S+ L     +   +  +L   I  AVR LDNVID+N + +  AK +N  +R
Sbjct: 573 GDFVVCNLASLVLGNIDTD---NDAELEGIIEAAVRALDNVIDLNFYPVPYAKITNEQYR 629

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           AIGLG+ G+   L   HI + S   +++ADE  E I+++A+ AS+++AQE+GAY  F+ S
Sbjct: 630 AIGLGVSGYHHLLAKKHIAWESDAHLKLADELFEKINYYAVQASMQIAQEKGAYRLFEDS 689

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W  G                    R     W+ L++ V   G+RN   +A+APT++ + 
Sbjct: 690 DWQTG--------------AYFEKRRYQSERWNALREEVARHGIRNGYLLAVAPTSSTSI 735

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G +  IDP  +  +++         V   L                            
Sbjct: 736 VAGTTAGIDPIMKRYFLEEKKGSLVPRVAPAL---------------------------- 767

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                D   ++  A  ID +W I +   RQ+ IDQ QS+N Y+ ++ S +++  +Y +AW
Sbjct: 768 ---SLDTYWLYKNAHTIDQLWSIRACGLRQRHIDQGQSMNFYITNDYSFRQVLNLYVEAW 824

Query: 894 LMGLKTTYYLRSRS 907
             G+K+ YY+RSRS
Sbjct: 825 KNGIKSVYYVRSRS 838


>gi|319902177|ref|YP_004161905.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417208|gb|ADV44319.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           helcogenes P 36-108]
          Length = 839

 Score =  566 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 274/914 (29%), Positives = 438/914 (47%), Gaps = 121/914 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    +D  KI+ AI K+F++   K         + I  L  +    +  + +
Sbjct: 1   MEITKRNGTREPYDKEKIATAIRKSFISTGQKV------TDETIYILVREVENFVDGNME 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +    ++E IQD+VE  LM+ G +   + Y+LYR +R++ R A ++  ++      + I+
Sbjct: 55  NR---NVERIQDEVERCLMEHGFYTEAKNYILYRWQRTERRKALNNIVNEVGDTTLMDIL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207
                          +  +  C    +  S I+L+E + + Y   ++  +  TAL+ ++ 
Sbjct: 112 KS-------------IQQDFTC----NEYSLIMLAEKFSSFYKPEMASKERLTALVKAAI 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P++  + AR L  +L +E+          + + ++  L  E            
Sbjct: 155 ELTTQEAPDWEFIAARILNFQLSKELKEQEGVAGIHSFYEKLCFLTNEGL--------YG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325
             +  +    ++      L  ERD    Y GL +L  RY +     + IE  Q  ++ +A
Sbjct: 207 DYILAAYSPQEIEEAEGFLCSERDKLLNYSGLDLLAKRYLIRTRSHQLIESVQEMYLGIA 266

Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           + LA+ E   +     + Y+LLS      +TPT+ N+   + QLSSCF+ TVPD L GI+
Sbjct: 267 LHLAMPENKNRMSWVKKIYDLLSCLEATMATPTMANARKPYHQLSSCFIDTVPDSLEGIY 326

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G R
Sbjct: 327 RSIDNFAMVSKFGGGMGLYFGKVRASGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLGMR 386

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N  W +F
Sbjct: 387 QGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQVWYMF 446

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P+E+       L D YGKE+E  Y    + +   +    R IS   + R +L    ETG
Sbjct: 447 CPNEIMTVKGYCLEDFYGKEWECRYLECVKDSRLSK----RSISIKDIIRLVLRSAVETG 502

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------- 596
            P+   +D  N  +P  H G+++ SNLCTEI  N S+ E                     
Sbjct: 503 TPFTFNRDTVNYANPNTHKGIIYCSNLCTEIAQNMSAIENISTDIKTKEGDTVVVKTVRP 562

Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
               VCNL S++L         D +++   + T VR LDNVID+N + +  A+ +NH +R
Sbjct: 563 GDFVVCNLASLSLGHL---PLEDEEQMRDKVATIVRALDNVIDLNFYPVPFARITNHRYR 619

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           +IGLG+ G+  AL L  I + S E +   D+  E I++ AI AS +LA+E+G Y+ F+GS
Sbjct: 620 SIGLGVSGYHHALALRGIHWESDEHLHFMDKVFERINYAAIQASADLAKEKGKYAYFEGS 679

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W  G                 +    +   W  L K+V   GMRN+  +AIAPT++   
Sbjct: 680 DWQTG--------------AYFSKRGYTSSAWQRLAKKVSEYGMRNAYLLAIAPTSSTGI 725

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G +   DP  +  +++         V                                
Sbjct: 726 IAGTTAGTDPVMKRFFLEEKKGAMLPRVAP------------------------------ 755

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             + D    I+  A+ ID  W I +A  RQ+ +DQAQSLNLY+ +E + +++  +Y  AW
Sbjct: 756 -GLSDKTYWIYKGAYLIDQQWSIRAAGIRQRHLDQAQSLNLYITNEFTMRQVLRLYLLAW 814

Query: 894 LMGLKTTYYLRSRS 907
             G+KT YY+RS+S
Sbjct: 815 ECGVKTLYYVRSKS 828


>gi|332022563|gb|EGI62865.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 748

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 231/756 (30%), Positives = 389/756 (51%), Gaps = 32/756 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +  ++   +E  C GL    V    +      N+  G++ S+L+   
Sbjct: 8   MHVLKRDGHKEPVHFDKITGRIEALCYGLDMNYVDPSAIALRVITNLCSGVTTSELDNLA 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ T+I + P+YA + +R  +  L +E         +K     +  LY        E 
Sbjct: 68  AETAATMINQHPDYATLASRIAISNLHKET--------KKVFSEVIANLYYAKSSITNEH 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  +  ++  +   L + + Y+RDF + Y   ++L   + L +NG  +E PQ   M
Sbjct: 120 LPIISEKYYQIIQNNADKLNSAILYDRDFNYSYATFKMLESDHLLKLNGKVVERPQHMLM 179

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           R+A+ +  ++ +K    +E YN +S  +F+ +  T+  + T   Q++S FL T+  D + 
Sbjct: 180 RIAVAIHGEDIDKV---IETYNFMSKQYFIYAAQTIDTACTITQQMASTFLLTMSGDSID 236

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI   L+   +L  Y+G +G +   +R     I GT G S G++P LK  + +   V++ 
Sbjct: 237 GILDTLERFTILCDYNGEIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKTYDTSIGTVSKN 296

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
            K +G +  YLE WH D+ EFLDL+++ G+++ R   M    W P+LFMKRV  +  W+L
Sbjct: 297 DKNEGPITVYLEPWHSDIFEFLDLKRSIGEEQLRAKGMCYGLWTPNLFMKRVFDDDVWSL 356

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E   L + +G EFE  Y  YE+     E +  R+I A  LW  ++ +  ETG P+I
Sbjct: 357 MCPHECPGLIEAWGDEFETLYTKYEQ-----EGRFRRQIKARELWLLIIQIQCETGVPYI 411

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYD 619
            FKD CN +S  QH+G +  S+  TE+   SSS+E A+CN  SI  N+  +     FD+ 
Sbjct: 412 IFKDHCNYKSNHQHLGTIKCSSFSTEVVQYSSSDEVAMCNTASIAVNMFVNSTKKVFDFY 471

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL    +     LD +ID+N + + +AK S   HR+IG+G+ G   A  L+  P+ S EA
Sbjct: 472 KLKEIAKIVTHNLDKMIDVNVYPLPEAKLSCDKHRSIGIGVQGLADAFILMRYPFESKEA 531

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            E+  +  E + + A+ AS E+A E+G Y S+K S   +G+   D             + 
Sbjct: 532 NELNVQIFETLYYGALEASCEIATEKGPYESYKDSPISEGILQFDMWH----------VK 581

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T+   WD LK ++   G+RNS  +A    A +A +   + SI+P   N+Y    +S  +
Sbjct: 582 PTNLWDWDILKAKIAKHGLRNSLLIAQMSDAFMAQMLENNMSIEPYMSNIYTIHALSKQY 641

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           +++   L+ +L ++ LWDE M + + ++ GSI NIE IP+DLK ++ T +E+    + E 
Sbjct: 642 SIIKPHLLRDLIEKGLWDENMCNKIIFNGGSIQNIEEIPEDLKLLYKTVWEMPQKTIFEM 701

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
           A+ R  +IDQ+Q LN+++ +P  +KL  ++  AW  
Sbjct: 702 AASRGPFIDQSQCLNVHMIDP-LEKLTSMHFFAWES 736


>gi|317122810|ref|YP_004102813.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Thermaerobacter marianensis DSM 12885]
 gi|315592790|gb|ADU52086.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermaerobacter marianensis DSM 12885]
          Length = 855

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 318/795 (40%), Positives = 454/795 (57%), Gaps = 51/795 (6%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE  L+ ++   + +EP   +V  R  L +L R VL      P           Y   F 
Sbjct: 74  LEELLVQAATQHLHREPRMERVAVRARLRQLYRCVLNDEAPSP---------AAYRAAFP 124

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
            YI +GV    L E ++ FDL  LA  L+ ERD    ++GL  L DRY +    SR  +E
Sbjct: 125 AYIRKGVACGALDERLLAFDLDELAASLRPERDETLPFIGLVTLMDRYLVREPESRQWLE 184

Query: 316 MPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  FMRVAMGLAL E    +   A  FY+ +S+F ++ STPTLFN+GT H QLSSC+L
Sbjct: 185 TPQFLFMRVAMGLALAEEPGHRGAWARRFYHAMSTFRYLPSTPTLFNAGTPHHQLSSCYL 244

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  A ++   LAKY+GG+G   T +R  G+ + G NG+S GVIPF+   + 
Sbjct: 245 ADVHDSMDHILDAARDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFVHFYDA 304

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              AVNQGG+R+G +  YLE WH+++E FLDL++N+GD   R H +NTA WIPD F++RV
Sbjct: 305 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 364

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLT 551
                W LF P  V +L +  G++F  AY    RQA+ G +  + ++++ A  L+R++L 
Sbjct: 365 EAGEPWYLFDPAYVPELPEKVGRDFAAAYAERIRQAEAGALPARAWKRVDARQLFREILA 424

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            L ET HPW+ FKD  N+RS     GV+HSSNLCTE+ L ++++E AVCNL S+NL  H 
Sbjct: 425 TLQETSHPWLVFKDAGNLRSLLP--GVIHSSNLCTEVFLPTTADEVAVCNLASVNLARHL 482

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D+D LA T+  A+R LDNVID+N + IEKA++SN  HR +GLG+MGF  A++ L 
Sbjct: 483 GPQGIDWDALAETVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 542

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             YA PEA ++ D  +EFIS+HAI AS  LA+ERG++ +F  S W QG  PID++  L  
Sbjct: 543 WGYADPEAADLVDRVLEFISYHAILASHRLAEERGSFPAFAESGWAQGRVPIDTLADLEA 602

Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R   + ++RT+RL W+ ++ +V+  GMRN   MAIAPTATI+ I G + S+DP Y N++
Sbjct: 603 ERGEPVTVDRTARLDWESVRAQVRR-GMRNGTVMAIAPTATISLIAGTTPSLDPPYANVF 661

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG F  +N  LV EL++R LW EA+   +    G +  I  +P D++  + TA++
Sbjct: 662 SRQTLSGKFLEINRVLVEELERRGLW-EAVRDRIVEERGDLQPIAELPSDIRHRYPTAYQ 720

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + P   +E A+R QKW+D   S NL+L +     ++ +Y +AW  GLK+TYYL       
Sbjct: 721 VPPEAYLEVAARAQKWVDMGISRNLFLADRDLGTMERVYVEAWRRGLKSTYYLFMAPRMY 780

Query: 911 VEKSTLKGVDGKLN--------------------------AVPVTDPNSSTHSLGIPSSC 944
            E ST++    +                                    S+T +L   + C
Sbjct: 781 AEPSTVRVNKARRKLRWNLDDGTVAATVAAPAKAAVTAGPGDQARPGASATGALEAAAVC 840

Query: 945 TSDTE-----CEVCQ 954
               +     CE CQ
Sbjct: 841 RVRPDDPDLVCEACQ 855


>gi|313115921|ref|ZP_07801348.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621685|gb|EFQ05213.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 847

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 271/925 (29%), Positives = 429/925 (46%), Gaps = 126/925 (13%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
               ++   +++ KRNG    F   KI  A+ KAF   +G+G     R  D       + 
Sbjct: 1   MTGEDERIEMEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMD-------EI 50

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSK 136
           +  +L +    + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS    VR   + + 
Sbjct: 51  LATVLNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTV 110

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
            D  +   L+ +  D T   ++   L+M  E  C                     G++E 
Sbjct: 111 GDDSLDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTED 151

Query: 197 DLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +   AL  ++  L   E P +  + AR L    R        +  Q+     +  LY + 
Sbjct: 152 ERAEALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK- 203

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RI 314
                ++G+    +       ++    + L  ERD  F Y GL +L  RY +       +
Sbjct: 204 LRYLTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRVPL 263

Query: 315 EMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           E PQ  F+ +A+ LA+ E +++      FY++LS      +TPT+ N+   + QLSSCF+
Sbjct: 264 ETPQEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFV 323

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ ND
Sbjct: 324 DTVPDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVND 383

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +  
Sbjct: 384 TAVAVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLA 443

Query: 494 TQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +N    W L  P E+       L D +G E+E  Y +        +    R ++   + 
Sbjct: 444 EENIDAPWHLMCPHEILTVKGYALEDYWGTEWEKRYLDCVNDPRIEK----RSVTVKDIV 499

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-------- 598
           R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  E          
Sbjct: 500 RLVLRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTEN 559

Query: 599 ---------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                          VCNL S++L         D   +  T+ TA+R LDNVID+N + +
Sbjct: 560 GDTIVVTATRPGEFVVCNLASLSLGNLPVE---DEAYMERTVETAIRALDNVIDLNFYPL 616

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E A+ +N  +R+IGLG+ G+   L    I + S E +   D   E I++ A+ A   LA+
Sbjct: 617 EYARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAR 676

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y+ F+GS W  G                      +   W  L K V   GMRN+  
Sbjct: 677 EKGRYALFEGSDWQTG--------------AYFEKRGYTSEKWRALAKTVAVQGMRNAYL 722

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A+APT++ + + G S  IDP  +  +++         V                     
Sbjct: 723 LAVAPTSSTSILSGTSAGIDPIMKKFFLEEKKGSMLPRVAP------------------- 763

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                        +  D    +  A  ID  W + +A  RQ+ IDQAQS+NLY+ ++ S 
Sbjct: 764 ------------ELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSM 811

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +++  +Y +AW  G+KT YY+RS++
Sbjct: 812 RQVLRLYLEAWRAGVKTIYYVRSKA 836


>gi|160942849|ref|ZP_02090089.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445901|gb|EDP22904.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii
           M21/2]
          Length = 847

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 271/925 (29%), Positives = 429/925 (46%), Gaps = 126/925 (13%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
               ++   +++ KRNG    F   KI  A+ KAF   +G+G     R  D       + 
Sbjct: 1   MTGEDERIEMEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMD-------EI 50

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSK 136
           +  +L +    + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS    VR   + + 
Sbjct: 51  LATVLNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTV 110

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
            D  +   L+ +  D T   ++   L+M  E  C                     G++E 
Sbjct: 111 GDDSLDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTED 151

Query: 197 DLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +   AL  ++  L   E P +  + AR L    R        +  Q+     +  LY + 
Sbjct: 152 ERAEALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK- 203

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RI 314
                ++G+    +       ++    + L  ERD  F Y GL +L  RY +       +
Sbjct: 204 LRYLTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRAPL 263

Query: 315 EMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           E PQ  F+ +A+ LA+ E +++      FY++LS      +TPT+ N+   + QLSSCF+
Sbjct: 264 ETPQEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFV 323

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ ND
Sbjct: 324 DTVPDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVND 383

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +  
Sbjct: 384 TAVAVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLA 443

Query: 494 TQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +N    W L  P E+       L D +G E+E  Y +        +    R ++   + 
Sbjct: 444 EENIDAPWHLMCPHEILTVKGYALEDYWGTEWEKRYLDCVNDPRIEK----RSVTVKDIV 499

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-------- 598
           R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N +  E          
Sbjct: 500 RLVLRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTEN 559

Query: 599 ---------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                          VCNL S++L         D   +  T+ TA+R LDNVID+N + +
Sbjct: 560 GDTIVVTATRPGEFVVCNLASLSLGNLPVE---DEAYMERTVETAIRALDNVIDLNFYPL 616

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E A+ +N  +R+IGLG+ G+   L    I + S E +   D   E I++ A+ A   LA+
Sbjct: 617 EYARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAR 676

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y+ F+GS W  G                      +   W  L K V   GMRN+  
Sbjct: 677 EKGRYALFEGSDWQTG--------------AYFEKRGYTSEKWRALAKTVAVQGMRNAYL 722

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A+APT++ + + G S  IDP  +  +++         V                     
Sbjct: 723 LAVAPTSSTSILSGTSAGIDPIMKKFFLEEKKGSMLPRVAP------------------- 763

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                        +  D    +  A  ID  W + +A  RQ+ IDQAQS+NLY+ ++ S 
Sbjct: 764 ------------ELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSM 811

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
           +++  +Y +AW  G+KT YY+RS++
Sbjct: 812 RQVLRLYLEAWRAGVKTIYYVRSKA 836


>gi|289450489|ref|YP_003474450.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185036|gb|ADC91461.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 844

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 269/919 (29%), Positives = 435/919 (47%), Gaps = 126/919 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG + +F  +KI+ A+ KAF   +G     +    D +  LTE+    +     
Sbjct: 1   MKIEKRNGQIETFRSAKITAAMAKAF---DGLNVPIN---DDQLLKLTEKVEKLINTEVA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD---APIAPKL 145
           +  ++ +E +QD VE  LMQ G++++ + Y+LYR ER+  R  +           +   L
Sbjct: 55  NGYVLKVERVQDLVEKILMQEGYYEVAKSYILYRSERAQKRTMRRQLTELVKFQGLDETL 114

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
           + +  D    +++                      +L   + + Y   +   +    LI 
Sbjct: 115 RSIQKDYKSDNYSLD--------------------LLLAKFNSFYKLDMPFQEAMRMLIK 154

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  L  +E P +  + AR ++ ++  ++        +     +++ LY +       EG
Sbjct: 155 AAVELTTQEAPAWEFIAARLMMLQINEQI-------GEVCKQFKLRNLYDK-ISYLENEG 206

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           +  R + +S    ++    + +  ER+    Y GL +L  RY +H      IE PQ  F+
Sbjct: 207 LYGRYILQSYSKEEIATAESFIVEERNKLLNYSGLDLLCKRYVIHNYRHQIIETPQEMFL 266

Query: 323 RVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            +A+ LA+ E     +     +FY++LS      +TPTL N+   + QLSSCF+ TVPD 
Sbjct: 267 GIALHLAMHEKNGDERMGWVRKFYDMLSQLQVTMATPTLSNARKPYHQLSSCFIDTVPDS 326

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L GI+ ++   A ++K+ GG+G  +  VR +G+ I G  G + GVI ++K+ANDTAVAV+
Sbjct: 327 LEGIYRSITNFAQVSKFGGGMGLYFGKVRAIGSSIRGFQGVAGGVIRWVKLANDTAVAVD 386

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG- 498
           Q G R+G+V  YL+ WH DV EFL +R N GDDR + HD+  A   PDLF ++V  N   
Sbjct: 387 QLGMRQGSVACYLDIWHKDVPEFLQVRTNNGDDRMKAHDIFPAICYPDLFWRQVRDNINS 446

Query: 499 -WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            W L  P EV       L D YG+E+E  Y +  R     +    R+I    L R +L  
Sbjct: 447 SWYLLCPHEVLTVKGYALEDYYGEEWEKRYLDCVRDNRISK----REIPLKELVRLILKS 502

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG P+   +D  N  +P +H G+++ SNLCTEI  N S                   
Sbjct: 503 CVETGTPFTFNRDIVNRNNPNKHKGIIYCSNLCTEICQNMSEIKQVSLELKDENGDTVVV 562

Query: 596 ------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                 +  VCNL S+ L           ++L S + T VR LDNVID+N + +  AK +
Sbjct: 563 ETTKPGDFVVCNLASLALGRIDMKRP---EELESIVGTVVRALDNVIDLNFYPLPYAKHT 619

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +R++GLG+ G+   L    I + S E ++  D+  E I++ AI  S+ELA+E+G Y 
Sbjct: 620 NKAYRSLGLGISGYHHMLAKNGIAWESEEHLQFVDKIFERINYAAIKTSMELAKEKGKYK 679

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W  G              +   +   +   W  L   V   G+RN+  +AIAPT
Sbjct: 680 YFEGSDWATG--------------EYFTLRNYTDEKWQSLASAVAKNGLRNAYLIAIAPT 725

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           ++ + I G +  +DP  +  +++        V+   +  EL     W             
Sbjct: 726 SSTSIIAGTTAGLDPVMKRYFLEEKKG----VIMPRVAPELSLNTYW------------- 768

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
                         ++  A  ID  W + +A  RQ+ IDQAQSLNLY+    + +++   
Sbjct: 769 --------------LYKEAHLIDQEWTVRAAGVRQRHIDQAQSLNLYVTQNLTFRQILGY 814

Query: 889 YRQAWLMGLKTTYYLRSRS 907
           + +AW  G+KT YY RS +
Sbjct: 815 FIKAWENGVKTIYYCRSLA 833


>gi|269859792|ref|XP_002649620.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066983|gb|EED44452.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 769

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/787 (30%), Positives = 403/787 (51%), Gaps = 36/787 (4%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220
           R++  VEE    +  +  K    +    +   ++  ++       + ++I   PNY K+ 
Sbjct: 15  RIKAFVEEF--NITSIDLKNYFKQVSSGLAMEMTCEEMSKYCSEVAASMITLHPNYNKLA 72

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           +  L++ L         ++                   + E+ V+   LH    D     
Sbjct: 73  SVILIKYLHCSTHENFSERFLLLHSE---------LNIFDEDIVQLVKLHRKYYD----- 118

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
             + +    D+ F+Y GL  L+  Y   IN S +E PQ  +M+VA+ L     +      
Sbjct: 119 --DIIDSTNDYLFDYFGLITLFKTYLNKINNSIVERPQDIYMKVAIQLHRSNFDDV---K 173

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-YGIFGALQENAMLAKYSGG 399
             Y LLS+F++   TPTL+NS  + PQ++SCFL  + DD   GIF  +++ A + K++GG
Sbjct: 174 TTYELLSNFYYTHGTPTLYNSCLKKPQMASCFLLAMKDDSVEGIFETIKDCASIRKFNGG 233

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC-AYLETWHID 458
           +G   T +R   + I+ T G+++G+IP +++ ++T    N+   ++   C  YLE WH D
Sbjct: 234 IGMYLTNIRPNKSKINSTGGEAKGIIPVIRLISETIKYFNKNETKRSTSCAFYLEPWHPD 293

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +FL+LRKNTG +  R  D     +I D+FM+RV  N  W+LF P   + L + +G EF
Sbjct: 294 IFDFLNLRKNTGPEDMRARDAFIGLFINDIFMERVQNNENWSLFDPSIATGLINAWGDEF 353

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
              YE YE+   +        I A  LW++++    ETG P++ +KD CN  S Q ++G 
Sbjct: 354 NKLYEYYEKTIPKI------TIPAQKLWKEIICAQIETGTPYLVYKDSCNRNSNQNNLGT 407

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVID 637
           + SSNLC EI   S +  T VCNL SI L     N NQFD+ +L   ++     L+ +ID
Sbjct: 408 IKSSNLCAEIIEYSDANITGVCNLASICLPKFINNANQFDFKQLYQVMKKVTINLNKLID 467

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           I+ +  ++AK SN   R IG+G+ G   AL  + IP+ S +A E+     E + +  +  
Sbjct: 468 ISFYPTKEAKYSNEATRPIGIGVQGLADALCKMRIPFESSQAKELNRMIFETMYYSVMET 527

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+  G Y     S++ +G+F  +   L  +  D L    +    W++L+++++  G
Sbjct: 528 SMELAKTYGPYPLITNSMYSKGIFHFEKY-LKNKNIDIL----SGLWDWEDLREKIRLYG 582

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS  ++I PTAT A ICG S+ ++P   N+Y +    G+F +VN +L+N+L +  LW 
Sbjct: 583 VRNSLTLSIMPTATTAQICGNSECVEPITSNIYTRRTFVGEFQIVNKYLMNDLIKLGLWS 642

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             M   +  ++GSI NI  IP ++K ++ T +EI    +++ A  RQ ++DQ+QSLNL++
Sbjct: 643 NEMKQLIIEYNGSIQNIPTIPSNIKNLYKTVWEIKMKCILDMAHERQAFVDQSQSLNLFI 702

Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            +P+   L  ++   W +GLKT  YYLR+    S  K T+           + +      
Sbjct: 703 SQPTYAILSSMHFYGWKLGLKTGIYYLRTSPIASAIKFTIDKELIIRTLSSMKNDECEPP 762

Query: 937 SLGIPSS 943
           +    S 
Sbjct: 763 NCKECSC 769


>gi|9634360|ref|NP_037899.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
 gi|6960598|gb|AAF33668.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
          Length = 770

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/827 (30%), Positives = 404/827 (48%), Gaps = 71/827 (8%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGL 193
           +++  I  K KI+  +    +     L +++   C  +    V    ++ +      D +
Sbjct: 4   ENNFEIDSKFKIIPSNNVSEN-----LTLLLNSLCKNIDTRYVDVPKLVHKVVAESGD-I 57

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
               ++      + ++     +YA +  R L+E L  +V +             +     
Sbjct: 58  GFDKIKLYCADVAASMTYVHYDYALLAGRILVEDLHSKVSSCFVTIANDLFSRNVLS--- 114

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           + F + +++                  L N++K+ERD+ ++Y G + L + Y L I+   
Sbjct: 115 DEFNQLVKKHGAI--------------LNNEIKHERDYNYKYFGFKTLTNGYLLKIDDVI 160

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +E PQ   MRVA+ +   +    K  +E Y L+S   F  ++PTLF++GTR  Q+ SCFL
Sbjct: 161 MERPQHMLMRVALAIHGDD---VKSVIETYQLMSLGTFTHASPTLFSAGTRRQQMCSCFL 217

Query: 374 TTVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
            ++ DD   GI+  L E+A+++   GGLG       G             G++  L+V N
Sbjct: 218 QSIKDDSVDGIYKTLHESALISNLGGGLGLSAQNSGG------------SGLVNMLRVFN 265

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +    V+QGGKRKGA+ AY+E WH ++ EFL+LR+N G +  +  D+    WIPDLFMKR
Sbjct: 266 NMVRHVDQGGKRKGALAAYIEPWHPEIYEFLNLRRNMGSEDTKARDLMLGLWIPDLFMKR 325

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  N  W+LFS     DL D YG +FE+ Y +YE           R++ A  L+R ++  
Sbjct: 326 VKNNQMWSLFSHKTCPDLADKYGFDFEMRYCDYENAQV-----YERQVKARDLFRFIVET 380

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             ETG P++ +KD CN  S Q+++G +  SNLC EI       ETAVCNL SI +     
Sbjct: 381 NVETGGPYMLYKDHCNNFSNQKNLGTIKCSNLCAEIVQYCDENETAVCNLASIAVNKCVD 440

Query: 613 NN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +   FDY  L    +  VR L+ +ID+N +   ++++SN  HR IG+G+ G   A  LL
Sbjct: 441 VDAKTFDYVLLKHLTKIIVRNLNKIIDVNHYPTAESERSNKKHRPIGVGIQGLADAFVLL 500

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            I Y S +A  +     E I F A+ AS ELA+  G Y S+  S   +G+    +     
Sbjct: 501 DIAYDSDDARFVNYSIAETIYFAALEASCELAKINGPYESYTDSPVSRGILHFHNYD--- 557

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       N      W+EL+  +   G+RNS  +A  PTAT A I G ++S +P   N+Y
Sbjct: 558 DENGVYHSNN--LWDWNELQCNINKYGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVY 615

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           ++  ++G+F VVN +LV  L   D++   + + +   +GS+ NI+ IP  +K +  TA+E
Sbjct: 616 LRRVLAGEFQVVNQYLVKALIDLDIYTPELRNKILAENGSVQNIDEIPQHVKNLFKTAWE 675

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +I  A+ R  +IDQ+QSLNL++ EP+   +  I+  AW   LKT  YYLR++ A 
Sbjct: 676 IKSKCIINMAADRAPFIDQSQSLNLFVAEPTYSVVSSIHFYAWEKKLKTGMYYLRTKPAA 735

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE---CEVC 953
              K T+                 +  S         D +   C  C
Sbjct: 736 QATKFTVD--------------VETVASCSKKRKMNDDDDNVVCVSC 768


>gi|307169039|gb|EFN61884.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 744

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 237/760 (31%), Positives = 395/760 (51%), Gaps = 34/760 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG     +   +   ++  C  L    V   I+      ++Y G++  +L+   
Sbjct: 1   MHVLKRDGRKEPVHFDEITARIKTLCYDLDMNYVDPSIIALRVITDLYSGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + ++I + P+YA + AR  +  L +E   T  +         +  LY        + 
Sbjct: 61  SEIAASMINQHPDYAILAARIAISNLHKETKKTFSEV--------IADLYDAKNSITNKR 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  +  ++  +   L + + Y+RDF + Y   ++L   + L +NG  +E PQ   M
Sbjct: 113 LPIISEKYYKIIQSNADKLNSAIIYDRDFNYSYTTYKMLETNHLLKLNGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+ +     +   +A+E YN LS  +F+    TL  + T   Q++S FL T+  D + 
Sbjct: 173 RVAIAIH---DDDIDKAIETYNFLSKQYFIYPAQTLDTACTVTQQMASSFLLTMSGDSID 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI   L+ +A+L  Y+G +G +   +R     I GT G S G++P LK  N +   V++ 
Sbjct: 230 GILDTLERSAVLCHYNGDIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKAYNTSIATVSRK 289

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
              +  V  YLE WH D+ EFLDL+KN G+++ R  DM  A W PDLFM+R+  +  W+L
Sbjct: 290 NTEQ--VTVYLEPWHADIFEFLDLKKNIGEEKLRAKDMFYALWTPDLFMQRIFNDDVWSL 347

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E  DL + YG+EFE+ Y  YE+     E +  ++I A  LW  ++   FETG P+I
Sbjct: 348 MCPHECPDLIEAYGEEFELLYTRYEK-----EGRFRKQIKARDLWLLIIQTQFETGTPYI 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYD 619
            +KD CN ++  Q++G +  S   TEI   SSS+E A+CN  SI  N+        FD++
Sbjct: 403 VYKDHCNRKTNHQNLGTIKCSGFSTEIIQYSSSDEIAMCNTASIAVNMFVDPIKKTFDFN 462

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL   ++     LD +ID N + + + K S   HR+IG+G+ G   A  L+  P+ S EA
Sbjct: 463 KLKEIVKIVTYNLDKMIDANFYPLPEIKLSCEKHRSIGIGVQGLADAFILMRYPFESQEA 522

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            ++  +  E + + A+ AS E+A ++G+Y S+KGS   +G+   D               
Sbjct: 523 RKLNIQIFETLYYGALEASCEIAIKKGSYVSYKGSPISKGMLQYDMWNAKP--------- 573

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
            T    W+ LKK+++  G+RNS  +A    A +A +   + S++P   N+YV   +S  F
Sbjct: 574 -TDLWDWNTLKKKIEEHGVRNSLLIAQMSDAFMAQMLENNVSVEPYTSNIYVIHALSKQF 632

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +V   L+ +L ++ LWDE + + +  +DGSI NIE IP++LK ++ TA+E+    + + 
Sbjct: 633 RIVKPRLLRDLIEKKLWDENICNKIINNDGSIQNIEDIPNELKLLYKTAWEMPQKTIFDM 692

Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           A+ R  +IDQ+Q LN+++ +P  +KL  ++  AW  GLK+
Sbjct: 693 AACRGPFIDQSQCLNVHMIDP-LEKLTSMHFYAWENGLKS 731


>gi|237726930|ref|ZP_04557411.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           D4]
 gi|229433786|gb|EEO43863.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           dorei 5_1_36/D4]
          Length = 839

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 284/916 (31%), Positives = 442/916 (48%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +         + +  + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +       IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E + + +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGK++E  Y +    +   +    R +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKKWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V   L                          
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +E + +++  +Y  
Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTIYYVRSKS 828


>gi|265756567|ref|ZP_06090773.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_1_33FAA]
 gi|263233755|gb|EEZ19370.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           3_1_33FAA]
          Length = 839

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 286/916 (31%), Positives = 443/916 (48%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +         + +  + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +       IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E + + +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGKE+E  Y +    +   +    R +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATLVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  GV                     +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTGV--------------YFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V   L                          
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +E + +++  +Y  
Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTIYYVRSKS 828


>gi|42525857|ref|NP_970955.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           denticola ATCC 35405]
 gi|41815907|gb|AAS10836.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           denticola ATCC 35405]
          Length = 845

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/917 (30%), Positives = 454/917 (49%), Gaps = 121/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   +++P KI  AI  AF +VE         +  II  L ++    +L+  K
Sbjct: 1   MQIIKRNGETKNYEPEKIEGAIRSAFKSVENSPH---TDLDTIIPPLVKEIEEDILELTK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +V +E IQD VE +L++  ++   + ++LYR  R+  R ++                
Sbjct: 58  NGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMISR----------- 106

Query: 149 MDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
                   F++  ++ ++ E  +     + S  ++  +      + +SE++    LI +S
Sbjct: 107 -------FFDTIEIQSVLTEIQNDFTSDEYSLNLLAHKFLSFRKENMSETESLAMLIKAS 159

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  ++ P++  + AR L+ + + ++ T + K+   + + +++ L  E           
Sbjct: 160 VELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGL--------Y 211

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
              + E+    +L   A+ +  ER+  F Y  L +L  RY +H  +   +E PQ  F+ +
Sbjct: 212 GTYICEAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIHTHSNIVLESPQEMFLGI 271

Query: 325 AMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           A+ LA+KE  ++ +    FY++ S+     +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 272 ALHLAMKEKLKRLEWVRRFYDMTSTLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVAVDQLGV 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTL 501
           R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V  +    W L
Sbjct: 392 RQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDINSSWHL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+E  Y++    +   +    R+I    L R +L    ET
Sbjct: 452 MCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKELVRLILKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +   H G+++ SNLCTEI+ N S                       
Sbjct: 508 GTPFAFNRDHANKTNTNPHKGMIYCSNLCTEISQNMSGIKHKNIEIKTEDGDTVVATTTI 567

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L     N   D  ++ + + +AVR LDNVID+N + I  A+ +N  +
Sbjct: 568 PGDFVVCNLASLVLGNIDVN---DEQEIDTIVSSAVRALDNVIDLNFYPIPYAQITNSRY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+  AL    I + S E +  AD+  E I++ AI AS ++A+E+G+YS F+G
Sbjct: 625 RSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGSYSYFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G              +           W  L + VK+ GMRN+  +A+APT++ +
Sbjct: 685 SDWQTG--------------EYFKKRNYVDENWKALTEEVKSNGMRNAYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP                 +N + + E K                 GS+  
Sbjct: 731 IIAGTTAGVDPI----------------MNKYFLEEKK-----------------GSLMP 757

Query: 834 --IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                +  +   ++  A  I+  W I +A  RQ+ IDQAQS+NLY+ +E +  K+  +Y 
Sbjct: 758 RVAPSLSPETYWLYKNAHHIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTFSKVLSLYV 817

Query: 891 QAWLMGLKTTYYLRSRS 907
           +AW  GLK+ YY+RSRS
Sbjct: 818 KAWEEGLKSIYYVRSRS 834


>gi|212693365|ref|ZP_03301493.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855]
 gi|212664009|gb|EEB24583.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855]
          Length = 839

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 284/916 (31%), Positives = 442/916 (48%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +         + +  + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +       IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E + + +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  +R  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKIRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGKE+E  Y +    +   +    R +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V   L                          
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +E + +++  +Y  
Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTIYYVRSKS 828


>gi|325478799|gb|EGC81909.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 842

 Score =  561 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 278/913 (30%), Positives = 437/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G    F+  KI RAI KAF +V+      S   +  ++ ++E+    + Q   
Sbjct: 1   MQIIKRDGNKVDFEKIKIERAISKAFFSVD------SSITEKDLRKMSEKIEQTIKQKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E++QD VE +L+   +++  + ++LYR + +  R   +           L I 
Sbjct: 55  KDHIPTVEEVQDLVELTLIDENYYREVKSFILYRAKHNMDRKVLADFSRYIEDKKVLNI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  + EE  +    + S +   E++  +   ++E D+  AL  ++  
Sbjct: 114 -------------ITEVQEEFDNQRYPIESLLFKFESF--LKPNMTEEDMLKALTRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL+ ++  E+  +  +        +++ L         E+G+   
Sbjct: 159 LTSKESPDWEIIAARFLMYQIDLEIEKSEERYELFDFKSKIEFL--------TEKGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326
            + E+    ++  L   + Y R+  F Y GL +L  RY   +  G  IE  Q  FM +AM
Sbjct: 211 YILENYSSEEIDELEKYMDYSRNNIFTYSGLDLLRKRYLITNHKGDLIERVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEADKVAFAKRLYDILSNLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF K  R   NA W +F P
Sbjct: 391 AVAVYLDIWHKDIPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKLTRDDINADWHMFDP 450

Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV   +     D YG+EFE  Y     +    +    R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGKALEDTYGEEFEEFY----HKLVADKDISRRTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +I  +D  N  +P +H G+++SSNLCTEI  N S  E                       
Sbjct: 507 FIFNRDIVNKANPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N+  D ++   T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVNDPTDLEE---TVRTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I +       +  D   E I+++AI  S+E+A+E+G+YS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIRWQDEKAHEDFVDRVYEDINYYAIKESMEIAKEKGSYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G                          W+ELK+ VK+ G+RN   MA+APT + + I
Sbjct: 684 WDTG--------------AYFDQRDYKSERWEELKEEVKSNGLRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         V            L  +                 
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A +ID    +  A  RQ+ IDQAQS+N+Y+  E + +++  +Y  AW 
Sbjct: 767 --------LYENAHDIDQNISMRMAGVRQRHIDQAQSVNIYITTEYTMRQILNVYITAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+R +S
Sbjct: 819 SGVKSIYYVRGKS 831


>gi|320538425|ref|ZP_08038293.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           phagedenis F0421]
 gi|320144720|gb|EFW36468.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           phagedenis F0421]
          Length = 845

 Score =  561 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 274/921 (29%), Positives = 440/921 (47%), Gaps = 113/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    ++  KI RAI  AF +V    AS    +  I+ +LT +    +   +K
Sbjct: 1   MEIIKRNGERRPYEAEKIGRAIRAAFDSV---PASPHTDIGKIVDSLTMEIEGDIKDLSK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  +V +E IQD VE +L++  ++   + ++LYR +R+  R A+   +   P      ++
Sbjct: 58  NGNLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVDRTKKRDARKTIEQSFPTIDVRSVL 117

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           +            ++    E    L  +S K    +      + +SE +    LI ++  
Sbjct: 118 L-----------EVQNDFTEDEYNLNLLSHKFHSFKK-----NDMSERECLNLLIKAAVE 161

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  +E P +  + +R L+     E+   + K+   + + ++  L         E G+   
Sbjct: 162 LTAQEAPRWELIASRLLMLSFTEELSVELEKRNIHSFYEKISYLE--------ENGLYGD 213

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAM 326
            + +     +L    + +  ER+    Y  L +L  RY +   G   +E PQ  F+ +A+
Sbjct: 214 YIRKHYTKEELETAFSYIDTERNKLLTYSSLDMLLRRYVIRTRGHIPLETPQEMFLGIAL 273

Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E E +     +FY++LS      +TPT+ N+   + QLSSCF+ TVPD L GI+ 
Sbjct: 274 HLAMLEKEKRMYWVKQFYDMLSKLQVTMATPTISNARKPYHQLSSCFIDTVPDSLDGIYR 333

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVAV+Q G R+
Sbjct: 334 SIDNFAKISKFGGGMGLYFGKVRAVGSPIRGFQGAAGGIIRWIKLANDTAVAVDQLGVRQ 393

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503
           G+V  YL+ WH DV EFL LR N GDDR + HD+  A   PDLF K V  +    W L  
Sbjct: 394 GSVAVYLDIWHKDVPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKTVRDDINASWYLMC 453

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D +G E+E  Y++  + +   +    R+I    L R +L    ETG 
Sbjct: 454 PHEILSVKGYSLEDYFGDEWEKRYKDCVQDSRISK----REIPIKELVRLILKSAVETGT 509

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------------- 595
           P+  ++D  N  +P  H G+++ SNLCTEI  N S                         
Sbjct: 510 PFAFYRDAANKTNPNGHKGMIYCSNLCTEIAQNMSPIQSQSQEIKTVDGETVVVTTTKPG 569

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+ L         D  +L   + + VR LDNVID+N + +  AK +N  +RA
Sbjct: 570 DFVVCNLASLVLGNIEVT---DRKELQRIVYSVVRALDNVIDLNYYPVPYAKITNGQYRA 626

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L   +I + S E +   D+  E I+F AI AS+++A+E+G+Y  F+GS 
Sbjct: 627 IGLGTSGYHHMLAKQNIAWESEEHLRFVDKVFEDINFAAIEASMQIAKEKGSYLYFEGSD 686

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G                      +   W  L+K V+T GMRN   +AIAPT++ + I
Sbjct: 687 WQTG--------------AYFTKRNYTSERWQALQKEVQTSGMRNGYLLAIAPTSSTSII 732

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +   DP  +  +++         V       L  +  W                   
Sbjct: 733 AGTTAGTDPVMKRYFLEEKKGALMPRVAP----ALSMKTFW------------------- 769

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A  ID  W + +A  RQ+ +DQAQS+NLY+  + + KK+  +Y +AW 
Sbjct: 770 --------LYKNAHLIDQEWSMRAAGVRQRHVDQAQSVNLYITTDYTFKKVLGLYLKAWE 821

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+K+ YY+RS+S    E  T
Sbjct: 822 EGVKSIYYVRSQSLEVEECET 842


>gi|150005610|ref|YP_001300354.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           vulgatus ATCC 8482]
 gi|254884473|ref|ZP_05257183.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           4_3_47FAA]
 gi|294778580|ref|ZP_06744002.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           vulgatus PC510]
 gi|319640835|ref|ZP_07995548.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A]
 gi|149934034|gb|ABR40732.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides
           vulgatus ATCC 8482]
 gi|254837266|gb|EET17575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           4_3_47FAA]
 gi|294447529|gb|EFG16107.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           vulgatus PC510]
 gi|317387647|gb|EFV68513.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A]
          Length = 839

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/916 (30%), Positives = 441/916 (48%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F++ + +         + +  + ++    L Q+  
Sbjct: 1   MQIIKRNGTTESYDREKIAVAIRKSFISTQKEI------TDEAVYTIVDEVEQFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R   S   +   D  IA  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKVLSQIITGTGDDTIANIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTFLAEKFTSFCK-------------------PDMTSGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L  +L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLTEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +       IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E + + +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQNRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKRDLNQQWH 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +    +   +    R +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGEEWEQRYMDCVNDSRLSK----RSMSIKDIVRLILRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+GAY  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLSFMDKVFERINYAAIAASSELAKEKGAYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V   L                          
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    I+ +A+  D  W I +A  RQ  IDQAQSLNLY+ +E + +++  +Y  
Sbjct: 758 -----SDKTYWIYKSAYLTDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTVYYVRSKS 828


>gi|255008713|ref|ZP_05280839.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
 gi|313146448|ref|ZP_07808641.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
 gi|313135215|gb|EFR52575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides
           fragilis 3_1_12]
          Length = 838

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/916 (30%), Positives = 430/916 (46%), Gaps = 126/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG    ++  KI+ AI K+F +   +         + +  + ++    L     
Sbjct: 1   MQIIKRNGATEPYNREKIAVAIRKSFASTGREVP------DETVYTIVDEVELFLCDEVH 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD---APIAPKL 145
                 +E IQD+VE SLM+ G +   + Y+LYR +R++ R A +H  S      +A  L
Sbjct: 55  R----SVEQIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKAFNHIVSSIGSEALADTL 110

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D     ++   L       C                      ++  +  T LI +
Sbjct: 111 KDIQKDFVANEYSLVILAEKFVNLCKT-------------------DMTAEERLTTLIKA 151

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR    +L +++          + + +++ L         +EG+
Sbjct: 152 AVELTSQEAPDWEFIAARLFNFQLTQKLKVQAEIAGIYSFYDKLRYL--------TDEGL 203

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               +  +    ++   A  +  ERD  F Y GL +L  RY +   +   +E  Q  ++ 
Sbjct: 204 YGDYILSAYSPREIEVAAGFMCPERDKLFNYSGLDLLAKRYLIRTHSHEPMESVQEMYLG 263

Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ L + E   + +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 264 IALHLGMSEKCDRLQWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 323

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 324 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 383

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N  W 
Sbjct: 384 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQQWY 443

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +        +    R ++   + R +L    E
Sbjct: 444 LFCPNEIMNVKGYCLEDYYGEEWEQKYLDCINDPLLSK----RVLNIKDIVRLILRSAVE 499

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS E                   
Sbjct: 500 TGTPFTFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSSIETVSTEVRTEGGDTVVVNTV 559

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   I   VR LDNVID+N + I  A+ +NH 
Sbjct: 560 RPGDFVVCNLASLSLGHL---PLEDERQMKEKIAVVVRALDNVIDLNFYPIPFARITNHR 616

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL L  I + S E ++  D+  E I++ AI AS  LA+E+G Y  F+
Sbjct: 617 YRSIGLGVSGYHHALALRGIRWESVEHLDFIDKVFECINYAAIEASAGLAKEKGRYVYFE 676

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                 A      L W +L  +V   GMRN+  +AIAPT++ 
Sbjct: 677 GSDWQTG--------------AYFAKRGYDSLQWKDLAAKVAADGMRNAYLLAIAPTSST 722

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V   L                          
Sbjct: 723 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPSL-------------------------- 756

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    ++  A+ ID  W I +A  RQ  IDQAQSLNLY+ ++ + +++  +Y  
Sbjct: 757 -----SDKTYWLYKGAYRIDQTWSIRAAGIRQLHIDQAQSLNLYITNDFTMRQVLNLYLL 811

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 812 AWECGVKTVYYVRSKS 827


>gi|237710422|ref|ZP_04540903.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           9_1_42FAA]
 gi|229455144|gb|EEO60865.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp.
           9_1_42FAA]
          Length = 839

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/916 (31%), Positives = 441/916 (48%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   S+D  KI+ AI K+F + + +         + +  + ++    L Q+  
Sbjct: 1   MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145
           +     +E IQD+VE SLM+ G +   + Y+LYR +R++ R A S   +   D  I+  L
Sbjct: 55  NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D +   ++   L       C                      ++  +   AL+ +
Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P++  + AR L   L +++          + + +++ L         +EG+
Sbjct: 153 AVELTTQETPDWEFIAARLLNFLLTKKLTEQAEAAGIFSFYDKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323
               +  S    ++   A  +  ERD  F Y GL +L  RY +       IE  Q  ++ 
Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264

Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E + + +   +FY++LS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  N  W 
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YGKE+E  Y +    +   +    R +S   + R +L    E
Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N SS E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + T VR LDNVI++N + I  A+ +NH 
Sbjct: 561 RSGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I++ AI+AS ELA+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W  L  +V T GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +   DP  +  +++         V   L                          
Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    I+ +A+ ID  W I +A  RQ  IDQAQSLNLY+ +E + +++  +Y  
Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWECGVKTVYYVRSKS 828


>gi|297587435|ref|ZP_06946080.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 53516]
 gi|297575416|gb|EFH94135.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 53516]
          Length = 842

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 267/913 (29%), Positives = 438/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V           ++ ++ + ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIKLAMKKAYASVGIYAE------ENELEAMAQEIENTIVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +        ++I 
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFERFITDEDVIEI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +     +   +    +++ L         E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEVQYDLQDFKSKIKFL--------DERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E   D D+  L   +  +RD  F +  L ++  RY +   +   +E  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYIDDDRDKLFTFSALDLIIKRYLIKTHDNRVMESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSTLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+      +L D YG E+E  Y     +    E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                          
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     N   + ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G              +   +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         V                                 
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            +      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY +AW 
Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYIRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|15639992|ref|NP_219445.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189026231|ref|YP_001934003.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093975|sp|O83972|RIR1_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|3323332|gb|AAC65956.1| ribonucleoside-diphosphate reductase, subunit alpha (nrdA)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018806|gb|ACD71424.1| ribonucleoside-diphosphate reductase, subunit alpha [Treponema
           pallidum subsp. pallidum SS14]
 gi|291060365|gb|ADD73100.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 845

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/913 (30%), Positives = 428/913 (46%), Gaps = 113/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKRNG    +   KI  AI  AF +V+   A     V  II +L  +   +L + N+
Sbjct: 1   MHIIKRNGEPQPYMREKIIVAISAAFRSVQNPLAP---EVPAIITDLAAEVERQLFEMNR 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           + + VH+E IQD VE +L +  H    + ++LYR++R+  R A+         +  L ++
Sbjct: 58  AGVPVHVEKIQDFVEKTLTKYNHSDEVKSFILYRDDRTKKRIAREQIACCFTDSSVLGVL 117

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            +      F               L  ++SK +L +  K + D      L   LI ++  
Sbjct: 118 KEIQQDFPFPE-----------YSLDALASKFLLFK--KEVTDERRSMQL---LIKAAVE 161

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  +E P +  + AR L+      + T++ K    + + ++  L         E G+   
Sbjct: 162 LTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKITYLE--------EAGLYGV 213

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAM 326
            +       ++   A  L+  RD  F Y  L ++  RY +       +E PQ  F+ +A+
Sbjct: 214 YIRTHYSRAEIEEAATYLECSRDKLFTYSSLDMILRRYVIRTRAHVPLETPQEMFLGIAL 273

Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E  ++ +    FY +LS      +TPTL N+     QLSSCF+ TVPD L GI+ 
Sbjct: 274 HLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFVDTVPDSLDGIYR 333

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   + ++K+ GG+G  +  VR +GA I G  G + G++ ++K+ANDTAVAV+Q G R+
Sbjct: 334 SIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLANDTAVAVDQLGVRQ 393

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V  N  A W L  
Sbjct: 394 GSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNLGASWYLMC 453

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D Y +E+E  Y +  + A   +    R I    L R +L  + ETG 
Sbjct: 454 PHEILTVKGYALEDFYAEEWEKRYWDCVKDARISK----RTIPIKELVRLVLKSVVETGT 509

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+  ++D  N  +P  H G+++ SNLCTEI  N S                         
Sbjct: 510 PFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKVVVQTTRPG 569

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+ L         D  +L   +R AVR LDNVID+  + +  A+ +N  +RA
Sbjct: 570 DFVVCNLASLVLSNID---LSDDKELREVVRVAVRALDNVIDLTYYPVPYAQVTNAYYRA 626

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+   L    I + S E +  AD   E I+  AI AS+ +A+E+GAY  F GS 
Sbjct: 627 IGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKGAYGCFTGSD 686

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G                          W  L++ V T GMRN   +A+APT++ + I
Sbjct: 687 WCTG--------------AYFRKRGYVSEDWQRLQREVATHGMRNGYLLAVAPTSSTSII 732

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  +DP  +  +++         V   L                             
Sbjct: 733 AGTTAGVDPIMKQYFLEEKKGMLMPRVAPSL----------------------------- 763

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++ +A  ++  W I +A  RQ+ IDQAQS+NLY+  + + K++  +Y  AW 
Sbjct: 764 --SQKTCPLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFTLKQVLDLYVYAWE 821

Query: 895 MGLKTTYYLRSRS 907
           +G+K+ YY+RS+S
Sbjct: 822 VGMKSLYYVRSQS 834


>gi|320120416|gb|EFE27702.2| ribonucleoside-diphosphate reductase, alpha subunit [Filifactor
           alocis ATCC 35896]
          Length = 842

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/913 (30%), Positives = 438/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q++KR+G    FD SKI  AI KAF++V     S      + I+++ +    R+     
Sbjct: 1   MQILKRSGEKREFDTSKIETAIQKAFLSVGLPVDS------EKIRSMVDTIEERVRTQFP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              IV +E+IQD VE  L+++ ++ + + Y+LYR     +R           +    +  
Sbjct: 55  KGHIVTVEEIQDLVEIVLIENNYYAVVKSYILYRASHHTMRK----------VIEDFEDY 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
             D +++    + ++ I  E    L       +  +    +   ++E +    LI ++  
Sbjct: 105 FSDKSIVE-ELREIQKIFTEDVYNL-----TFLFQKFKAFIKTNMTEEEYLGILIRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P +  V AR L  +L + +     +    +   ++  L         +E     
Sbjct: 159 LTSKEAPKWEFVAARLLSLQLNKRIEERANRLELYSFRDKIHYL--------TKEKRYGD 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326
            + E   + ++  L + LK ERD+ F Y GL ++  RY      G  +E  Q  FM +AM
Sbjct: 211 YILEQYQEDEIDELESYLKQERDYLFNYSGLDLVIKRYLITDREGEVLEKVQEMFMGIAM 270

Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E E + K A + Y+++S      +TPT+ N+     QLSSCF+ TVPD L GI+ 
Sbjct: 271 HLAIPEKENKVKWAKKIYDVISQLKVTMATPTMSNARKPFHQLSSCFIDTVPDTLDGIYR 330

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   + ++K+ GG+G  +  VR +G+ I G  G + GVI ++K+ANDTAVAV+Q G R+
Sbjct: 331 SITNFSQVSKHGGGMGLYFGKVRAMGSDIRGHKGVAGGVIRWIKLANDTAVAVDQLGVRQ 390

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503
           GA   YL+ WH DV EFL +R N GDDR + HD+  A  +P+ F K   +N    W +  
Sbjct: 391 GACAVYLDIWHKDVPEFLQIRTNNGDDRMKAHDVFPAICVPNYFWKLAKENRDANWYMMC 450

Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D YG+E+E  Y++    +   +    R I+   + R +L    ETG 
Sbjct: 451 PHEIEQVKGFRLEDCYGEEWEEKYQSCIEDSRIDK----RVITIKDMVRLILRSAIETGT 506

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596
           P++  +D  N  +P  H G+++SSNLCTEI  N  + E                      
Sbjct: 507 PFVFNRDIVNEYNPNSHKGMIYSSNLCTEIAQNMQAIESISTEIVVVDGEEIVVEKNKAG 566

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S+ L         +  +L   + T VR LDNVI++N + +  AK +N  +RA
Sbjct: 567 DFVVCNLASLVLGNIDVK---NKKELEEVVSTVVRALDNVIELNYYPLPYAKITNQKYRA 623

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+  +L    + + S E ++ ADE  E I++ AI  S EL++E+GAY  F+GS 
Sbjct: 624 IGLGTSGYHHSLVKNGMLFQSEEHLKFADEVYEDINYFAIKTSCELSKEKGAYPYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G              +           W+EL+K V   GMRN   MA+APT + + I
Sbjct: 684 WSNG--------------NYFDKRNYHSTRWNELRKEVNQYGMRNGYLMAVAPTGSTSVI 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + SIDP  +  +++         V      +L     W                   
Sbjct: 730 SGTTASIDPVMKRYFLEEKKGQIVPRVAP----DLTAETFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A EID  W+I+SA  RQ+ IDQ+QS+NLY+  E S  ++  +Y  A+ 
Sbjct: 767 --------MYENAHEIDQNWVIQSAGIRQRHIDQSQSVNLYITTEFSMSRMLKLYISAYE 818

Query: 895 MGLKTTYYLRSRS 907
            G+KT YY+RS+S
Sbjct: 819 HGVKTIYYVRSKS 831


>gi|169825013|ref|YP_001692624.1| ribonucleotide-diphosphate reductase subunit alpha [Finegoldia
           magna ATCC 29328]
 gi|167831818|dbj|BAG08734.1| ribonucleoside-diphosphate reductase alpha subunit [Finegoldia
           magna ATCC 29328]
          Length = 842

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 271/913 (29%), Positives = 438/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V           Q+ ++++ +Q    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIELAMKKAYASVGIYAE------QNELESMAQQIENTIVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +        ++I 
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFEKFITDDDVIEI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +     +   +    +++ L         E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEIQYDLQDFKSKIKFL--------DERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E   D D+  L   +  ERD  F +  L ++  RY +   +   IE  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+      +L D YG E+E  Y     +    E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                          
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISENIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     N   + ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G              +   +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         V                                 
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            +      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY +AW 
Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|328950374|ref|YP_004367709.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450698|gb|AEB11599.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 789

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 316/747 (42%), Positives = 431/747 (57%), Gaps = 16/747 (2%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP  +++  R LL    RE L T    P           Y + F RY++  ++   L   
Sbjct: 54  EPAASQIAVRVLLRHNYREALGTPTPSP---------AAYRQGFIRYVQNAIREGYLDPR 104

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLAL 330
           + D DL  LA  L+ ERD    Y GL  L DRY +    +G  +E PQ  FMRVAMGLAL
Sbjct: 105 LGDLDLEALATTLRPERDAELPYAGLVALLDRYVVRDLVSGRVLETPQFLFMRVAMGLAL 164

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
            E E       FY  +S    + STPTLFN+GT HPQLSSC+L  + D L  I   LQ  
Sbjct: 165 AEAEPLAWIPRFYEAISRRRVLPSTPTLFNAGTPHPQLSSCYLWVIEDSLDAILDGLQTF 224

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             LAKY+GG+G   T +R  GA + G +G S GVIPFL V +    AVNQGG+R+G + A
Sbjct: 225 GKLAKYAGGIGASLTKLRAKGAPVRGISGHSSGVIPFLNVYDALIQAVNQGGRRRGTMAA 284

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YLE WH++VE FLDLRKNTGD   R   +NTA ++PD FM+RV +   W LF P    DL
Sbjct: 285 YLEPWHLEVEAFLDLRKNTGDPYLRVRRLNTALFVPDEFMRRVERGEAWYLFDPQVAPDL 344

Query: 511 HDLYGKEFEIAYENYERQADRG--EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
            + +G+ F+ AY  Y + A+ G    + ++K+ A  L+R++L +L ET HPW+ FKD  N
Sbjct: 345 AETWGRAFDEAYARYIQAAEAGQLPPRSWKKLPARKLYREILAVLQETSHPWLVFKDAGN 404

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            RS    VG+VHSSNLCTEI L +S EE AVCNL S+NL A+    +  +  LA +   A
Sbjct: 405 ARSALAAVGMVHSSNLCTEIFLPTSQEEIAVCNLASLNLAAYLQRGRIQWRALAKSAHLA 464

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +R+LDNVID N +   +A++SN  +R +GLG+MGF      L + Y  PEA  + D   E
Sbjct: 465 MRMLDNVIDQNLYPDPRAEQSNWNNRPVGLGIMGFSEVFSRLGLAYPDPEAYALTDRITE 524

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWD 747
           ++S+HAI AS  LA+ERGA+  F  + W QG  P+D++  L  +R   + ++R +RL WD
Sbjct: 525 YVSYHAIQASALLARERGAFPRFPRTTWAQGRLPLDTLEDLERLRGAPVEVSREARLDWD 584

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  V+  GMRNS  MAIAPTA+I+ I G + S+DP Y N++ ++N+SG F  VN  LV
Sbjct: 585 ALRPLVQK-GMRNSTVMAIAPTASISLIAGTTPSLDPYYANVFSRNNLSGKFLEVNPVLV 643

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             LK+  LW+E          G +  IE IP+ L++   TA++I P   IE A+R QKW+
Sbjct: 644 EALKRAGLWEEVRERI-VEERGDLSEIEAIPEPLRRRFPTAYQIPPTAYIEHAARAQKWV 702

Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           D   S NLYL E S + ++ +Y +AW  GLK+TYYL        E+ST++    +     
Sbjct: 703 DMGVSRNLYLQERSLEAMEAVYLEAWRKGLKSTYYLYVAPRMYAEQSTVRVNKARKRPKW 762

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             +  + T         + D  CE CQ
Sbjct: 763 RLEEMAFTPERPEIQDPSEDALCEGCQ 789


>gi|223983471|ref|ZP_03633657.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM
           12042]
 gi|223964643|gb|EEF68969.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM
           12042]
          Length = 841

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 280/918 (30%), Positives = 428/918 (46%), Gaps = 127/918 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+  V ++D  KISRA+  AF +V          + ++ K      V   ++   
Sbjct: 1   MEIIKRDQSVQAYDRRKISRAVSAAFASV-------GHPLPEMTKEAILDQVEVQIRGAA 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL--- 145
               V +E IQD VE +LM+   ++  R Y+LYR+E + +R      +   P    L   
Sbjct: 54  ETAPVSVEQIQDWVEQALMRQNCYEEARHYILYRQEHARLRDQIDQLRRIIPDPEILATC 113

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           + +  D +  + +   L   V+                       + +  S     LI +
Sbjct: 114 RQLQRDFSQPAMSLDALIQKVQAFSK-------------------EKMKRSQQLDNLIRA 154

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
              L+ +E P++ K  ARF++ KLRR V   +  +  +    ++  L  +          
Sbjct: 155 CVELVSQEAPDWEKAAARFMMIKLRRSVSQRMEAQGIRTLAQKLLYLEAQGLLN------ 208

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
             + L E     DL  L   +  ERD  F   GL++L  RY +    G  +E+PQ  FM 
Sbjct: 209 --KDLSEHYSYNDLNRLEQAIDNERDQLFNASGLELLIKRYLIRDHQGEVLELPQEMFMG 266

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +AM LA+ E   + + A++ Y++LS      +TPTL N+     QL+SCF+  VPD L G
Sbjct: 267 IAMHLAIPEGKNRVEWAIKIYDVLSQLQVTMATPTLANARKPKAQLASCFIDVVPDSLKG 326

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   A ++K  GG+G  +  VR  G+ I G  G + GV+ ++++ NDTAVAV+Q G
Sbjct: 327 IYKSLDSFAQISKQGGGMGLYFGKVRASGSDIRGFQGAAGGVLRWIRLVNDTAVAVDQLG 386

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF +      +  W 
Sbjct: 387 VRQGAVAVYLDCWHRDLPEFLQIRTNNGDDRMKAHDVFPAVCYPDLFWRMAKASLDQNWY 446

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P ++       L D  G+ +E  Y+     +   +    R I    L R +L    E
Sbjct: 447 LMDPHQIQTVKGYALEDCTGELWEQRYQECVADSRIEK----RVILLKDLVRLILKSAAE 502

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592
           TG P++  +D  N  +P  H GV++ SNLCTEI  N                       +
Sbjct: 503 TGTPFVFNRDLVNAMNPNGHRGVIYCSNLCTEIAQNIAPAGEIETRMTEIDGEMVIIEQA 562

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
            + E  VCNL S+NL         D ++L S I   VR LDNVID+N + + +A+++   
Sbjct: 563 KAGEMVVCNLASLNLGRLNTE---DEEELRSVIEVTVRALDNVIDLNAYPLPQAQRTASR 619

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            RAIGLG+ G    L    I + S E +  AD+  E I+++AI AS++LAQE+G Y+ F+
Sbjct: 620 SRAIGLGVSGLHHWLAKRSIFFESEEHLNAADKLFEAINYNAIRASLQLAQEKGRYADFE 679

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W  L K V   G+RN   +AIAPT++ 
Sbjct: 680 GSDWQTG--------------AYFTKRGYTSDAWQTLAKEVARYGLRNGWLLAIAPTSST 725

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI- 831
           + I G S  +DP                 +N F + E K                 GSI 
Sbjct: 726 SVIAGTSAGVDPI----------------MNKFFLEEKK-----------------GSII 752

Query: 832 -GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 + +     +  A +ID  W++ +A  RQ+ IDQAQS+NLY+  + S + L  + 
Sbjct: 753 ARVAPELNEKTYWYYKKAHQIDQTWVVRAAGVRQRHIDQAQSVNLYITTDYSLRDLLNLM 812

Query: 890 RQAWLMGLKTTYYLRSRS 907
             AW  G+KT YY+RS+S
Sbjct: 813 ILAWEKGVKTLYYVRSQS 830


>gi|302379637|ref|ZP_07268122.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302312544|gb|EFK94540.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna ACS-171-V-Col3]
          Length = 842

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 270/913 (29%), Positives = 438/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD SKI  A+ KA+ +V           Q+ ++++ ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRSKIELAMKKAYASVGIYAE------QNELESMAQEIENTVVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +        ++I 
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFEKFITDDDVIEI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVDLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +     +   +    +++ L         E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEIQYDLQDFKSKIKFL--------DERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E   D D+  L   +  ERD  F +  L ++  RY +   +   IE  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+      +L D YG E+E  Y     +    E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                          
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     N   + ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G              +   +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         V                                 
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            +      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY +AW 
Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|325475466|gb|EGC78647.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402]
          Length = 845

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 280/918 (30%), Positives = 449/918 (48%), Gaps = 123/918 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG   +++P KI  AI  AF +VE         +  II  L ++    +L+  K
Sbjct: 1   MQIIKRNGETKNYEPEKIEGAIRSAFKSVENSPHKD---LDIIIPPLVKEIEEDILELTK 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
           S  +V +E IQD VE +L++  ++   + ++LYR  R+  R ++           I P L
Sbjct: 58  SGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMISRFFDTIEIQPIL 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             + +D T   ++   L                            + +SE++    LI +
Sbjct: 118 TEIQNDFTSDEYSLNLLAHKFLSFRK-------------------ENMSETESLAMLIKA 158

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S  L  ++ P++  + AR L+ + + ++ T + K+   + + +++ L  E          
Sbjct: 159 SVELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGL-------- 210

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + E+    +L   A+ +  ER+  F Y  L +L  RY +   + + +E PQ  F+ 
Sbjct: 211 YGTYICEAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIRTHSNTVLESPQEMFLG 270

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+KE   + +    FY++ SS     +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 271 IALHLAMKEKSNRLEWVRRFYDMTSSLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDG 330

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR +G+ I G  G + G+I ++K+ANDTAVAV+Q G
Sbjct: 331 IYRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVAVDQLG 390

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WT 500
            R+G+V  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V  +    W 
Sbjct: 391 VRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDINSSWH 450

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P E+       L D YG+E+E  Y++    +   +    R+I    L R +L    E
Sbjct: 451 LMCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKDLVRLILKSAVE 506

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------- 595
           TG P+   +D  N  +P  H G+++ SNLCTEI+ N S                      
Sbjct: 507 TGTPFAFNRDHANKTNPNPHKGMIYCSNLCTEISQNMSEIKHKTIEIKTENGDTVVATTT 566

Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S+ L     N   D  ++ + + +AVR LDNVID+N + I  A+ +N  
Sbjct: 567 IPGDFVVCNLASLVLGNIDVN---DEKEIDTIVSSAVRALDNVIDLNFYPIPYAQITNSR 623

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG  G+  AL    I + S E +  AD+  E I++ AI AS ++A+E+G+YS F+
Sbjct: 624 YRSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGSYSYFE 683

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S W  G              +           W  L + VK+ GMRN+  +A+APT++ 
Sbjct: 684 RSDWQTG--------------EYFKKRNYVDEKWKALAEEVKSNGMRNAYLLAVAPTSST 729

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  +DP                 +N + + E K                 GS+ 
Sbjct: 730 SIIAGTTAGVDPI----------------MNKYFLEEKK-----------------GSLM 756

Query: 833 N--IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 +  +   ++  A  I+  W I +A  RQ+ IDQAQS+NLY+ +E +  K+  +Y
Sbjct: 757 PRVAPSLSPETYWLYKNAHNIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTFSKVLSLY 816

Query: 890 RQAWLMGLKTTYYLRSRS 907
            +AW  G+K+ YY+RSRS
Sbjct: 817 VKAWEEGVKSIYYVRSRS 834


>gi|329939693|ref|ZP_08288994.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
 gi|329301263|gb|EGG45158.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
          Length = 811

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 295/820 (35%), Positives = 427/820 (52%), Gaps = 60/820 (7%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           L   + E  + L D     V +   +       E +L      ++  LI ++P ++++ A
Sbjct: 25  LLRTLTELSADLPDADPGRVAAAALRGRSRHAGEEELRELATEAAAGLISEDPAHSRLAA 84

Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
           R L   +R E  +        +    +   + E                 + +      L
Sbjct: 85  RLLTLTIRAEAASQ----GVTSFTSSVATGHREGLVA---------DRTAAFVRRHAARL 131

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
              +  + D  F Y GL+ L+ RY L        IE PQ F +RVA GLA +       A
Sbjct: 132 DALVDPDADDRFGYFGLRTLHTRYLLRHPVTRKVIETPQHFLLRVASGLAEEADRAGAGA 191

Query: 340 VE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENA 391
                     + L+S   ++ S+PTLFNSGTRHPQ+SSCFL   P D+L  I+    + A
Sbjct: 192 DRAVEEVAALHGLMSRLEYLPSSPTLFNSGTRHPQMSSCFLLDSPEDELDSIYSRYHQVA 251

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K++GG+G  ++ +R  GA I GTNG S G++PFLK  + +  AVNQGG+RKGA   Y
Sbjct: 252 RLSKHAGGIGLAYSRIRSRGALIRGTNGHSGGIVPFLKTLDASVAAVNQGGRRKGAAAVY 311

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           LETWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV  +A W+LFSP +V  L 
Sbjct: 312 LETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPSDVPGLT 371

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           DL+G EF+ AY   E      E    R + A  L+ +M+  L  TG  W+TFKD  N  +
Sbjct: 372 DLWGAEFDAAYRAAEA-----EGLAVRTLPARELYGRMMRTLASTGTGWMTFKDTANRTA 426

Query: 572 PQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---------------N 614
            Q      V+HSSNLCTEI   +   ETAVCNLGSINL A                    
Sbjct: 427 NQTAEPGNVIHSSNLCTEILEVTEDGETAVCNLGSINLGAFVREGNTADAGTADAGAADG 486

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D+++L +T+RTAV  LD VID+N +  E+A +SN   R +GLG+MG Q  L  L +P+
Sbjct: 487 GIDWERLDATVRTAVTFLDRVIDLNFYPTEEAGRSNARWRPVGLGVMGLQDVLFRLRLPF 546

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            SPEA  ++    E +   A   S ELA   G   +++ +   +GV   D          
Sbjct: 547 DSPEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTARGVLHPDHY-------- 598

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +  +    W  L++R+   GMRN+  +AIAPTATIA+I GV + ++P   NL+ +  
Sbjct: 599 --DVELSWPERWAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECVEPQVSNLFKRET 656

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F  VN +LV +LK+   WD      L+  +GS+  +  +P+++++++ TA+E+   
Sbjct: 657 LSGEFLQVNPYLVADLKRLGRWDADTREALREANGSVEGLTWLPEEVRRLYRTAWELPQR 716

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            LI+ A+ R  ++DQAQSLNL+L+ P+  KL  +Y  AW  GLKTTYYLRSR AT     
Sbjct: 717 ALIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATR---- 772

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +                +      +  S  +   CE CQ
Sbjct: 773 -IARAARAQRPAAEAPAPTVPDPEAVACSLENPEYCEACQ 811


>gi|313900055|ref|ZP_07833555.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. HGF2]
 gi|312955107|gb|EFR36775.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. HGF2]
          Length = 838

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/912 (30%), Positives = 434/912 (47%), Gaps = 118/912 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  F+  KI++AI KAF +           +++II+++T+           
Sbjct: 1   MKIQKRDGQLQEFEGEKIAQAIRKAFRST--GTLIEESVLKEIIEDITKAAAA------- 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              ++ +E +QD VE  LMQ   +K  + Y+LYR++R++ R                 I 
Sbjct: 52  DKPMLSVEVVQDLVEEELMQHQFYKEAKNYILYRQKRTESRKVVQDLVHALQKEDLYSI- 110

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        ++    +    L+      +L + +  + + +   +    L+ +S  
Sbjct: 111 ----------LADIQQRYPDEGYDLRH-----LLMKFHSFLKEDMESDERLHMLMKASVE 155

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           LI KE P +  + +RFL   L  E+   + K        +++ L         E+G    
Sbjct: 156 LISKEAPKWEYIASRFLSYALHEEISARMQKLELPVFSKKLKYLE--------EQGYYGD 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + ++  D ++  L   LK ERD+ F Y GL+++  RY +       +E PQ  FM +AM
Sbjct: 208 YIRKAYSDAEIDELGAYLKDERDYLFTYSGLELVKKRYLMCSHAHEVLETPQEMFMGIAM 267

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LAL E  +   A + Y++LS      +TPT+ N+   + QLSSCF+ TV D L  I+ +
Sbjct: 268 HLALPEQNRMYWAKQIYDILSQLQVTMATPTMSNARKPYHQLSSCFIDTVEDTLNNIYKS 327

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++KY GG+G  +  VR  G+ I G  G + GVI ++K+ NDTA AV+Q G R+G
Sbjct: 328 VDNFAQVSKYGGGMGLYFGKVRANGSDIRGFEGAAGGVIRWIKLVNDTATAVDQLGVRQG 387

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF K   +  NA W L  P
Sbjct: 388 AVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDLNATWYLMCP 447

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+       L D YG+E+E  Y +  +     +    R +    L R +L    ETG P
Sbjct: 448 HEIHKIKGYHLEDFYGEEWEERYFDCVQDPRVPK----RTMVLKDLVRLILKSAVETGTP 503

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------------SSEE 596
           +   +D  N  +P  H G+++ SNLCTEI  N                           +
Sbjct: 504 FTFNRDHVNRMNPNAHAGMIYCSNLCTEIAQNMKALKLEESRIVEIDGESVVVNESKPGD 563

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S++L     N   + ++L+  I   VR LDNVID+N + I  AK +N  +R I
Sbjct: 564 FVVCNLASLSLGNIDVN---NEEELSHIIHVIVRALDNVIDLNYYPIPYAKITNRKYRPI 620

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G+   L   ++ + S E ++ AD   E I+++AI AS  LA+E+G+YS F GS W
Sbjct: 621 GLGVSGYHHMLVKQNLRFESEEHLQYADTLFEKINYYAIQASTALAREKGSYSMFAGSDW 680

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G                      +   W  L ++V+  GMRN+  MAIAPT++ + I 
Sbjct: 681 QSG--------------AYFTKRGYTSDAWSRLFRQVREQGMRNAWLMAIAPTSSTSIIA 726

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +  +DP     Y++         V      +L  R  W                    
Sbjct: 727 GTTAGVDPIMNKYYLEEKKGSMIARVAP----DLDARTFW-------------------- 762

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                  ++  A  ID  W++ SA  RQ+ IDQAQS+NLY+ +E + +++  +Y  AW  
Sbjct: 763 -------LYKNAHLIDQEWVVRSAGIRQRHIDQAQSVNLYITNEFTLRQVLMLYIHAWEY 815

Query: 896 GLKTTYYLRSRS 907
           G+KT YY+RS+S
Sbjct: 816 GVKTIYYVRSKS 827


>gi|288928560|ref|ZP_06422407.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331394|gb|EFC69978.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 839

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/913 (29%), Positives = 434/913 (47%), Gaps = 119/913 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG +  FD  KI+ AI K+F++           V+D I ++       ++ H  
Sbjct: 1   MDITKRNGSMAPFDREKIATAIKKSFISTGRPI------VEDEIHDVAIAVEQVIITHP- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               +++E IQD+VE SLMQ G +   + Y+L+R +R++ R   +   +    A    ++
Sbjct: 54  --AKLNVECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNRIANTLQQAEIAPVL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
              G    F  +            L  +++  +  +    +   ++  D  +ALI ++  
Sbjct: 112 K--GIAADFEPE------------LYPIAA--LAEKFMGFVKADMNGRDKLSALIKAAVE 155

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L   E PN+  + AR L  +L+R++ T    +  ++   +++ L  +         +   
Sbjct: 156 LTSAEAPNWEFIAARLLSYRLQRDLETFEQAEDIQSFAQKVRHLASQ--------NLYGA 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + ++  + +L   A+ +  ER+    Y GL +L  RY +       +E  Q  F+ +A+
Sbjct: 208 YIVDAYTENELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQEMFLGIAL 267

Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E   +     +FY++LS      +TPTL N+     QLSSCF+ TVPD L GI+ 
Sbjct: 268 HLAMNEGENRLHWVKKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPDSLEGIYR 327

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV+Q G R+
Sbjct: 328 SIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAVDQLGVRQ 387

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   Q  N  W +F 
Sbjct: 388 GAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQQDLNQDWHMFC 447

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P+EV       L D YG+ +E  Y          +    R ++   + R +L    ETG 
Sbjct: 448 PNEVLTTRGYSLEDFYGEAWEEKYHECVAD----KRLSRRTMTIKDVIRLVLRSAVETGT 503

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596
           P+   +D  N  +P  H G+++ SNLCTEI  N  + E                      
Sbjct: 504 PFTFNRDIVNRANPNGHNGIIYCSNLCTEIAQNMKAIEEVSNEVLTKDGDTVVVRTVKPG 563

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S++L         +   L   + T VR LDNVID+N + +  A+ +NH +R+
Sbjct: 564 DFVVCNLASLSLGNL---PLENETYLNDIVATVVRALDNVIDLNFYPVPYAQITNHRYRS 620

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+  AL L  I + S E ++  D+  E I+  AI AS  LA+E+GAY+ F+GS 
Sbjct: 621 IGLGVSGYHHALALRGIKWESEEHLQFVDQVFERINRAAIEASSSLAKEKGAYAYFEGSD 680

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G                      +   W +  +RVK  GMRN+  +AIAPT++ + +
Sbjct: 681 WQTG--------------AYFDKRNYNSPQWQQTAQRVKAQGMRNAYLLAIAPTSSTSIV 726

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              +  +DP  Q  +++         V       L  R  W                   
Sbjct: 727 AATTAGLDPVMQRFFLEEKKGAMLPRVAP----ALSDRTFW------------------- 763

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A++ +  W + ++  RQ+ IDQAQS+NLY+ +  + ++L  +Y  AW 
Sbjct: 764 --------LYKGAYQTNQAWSMRASGIRQRHIDQAQSVNLYITNNYTMRQLLDLYLLAWQ 815

Query: 895 MGLKTTYYLRSRS 907
            G+KT YY+RS+S
Sbjct: 816 SGVKTIYYVRSKS 828


>gi|303234657|ref|ZP_07321286.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna BVS033A4]
 gi|302494222|gb|EFL53999.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia
           magna BVS033A4]
          Length = 842

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 269/913 (29%), Positives = 437/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G +  FD  KI  A+ KA+ +V           Q+ ++++ ++    ++    
Sbjct: 1   MEIKKRDGNIVDFDRLKIELAMKKAYASVGIYAE------QNELESMAQEIENTVVNKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE +L+  G +K+ + ++LYR + +  R      +        ++I 
Sbjct: 55  KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFEKFITDDDVIEI- 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        +  I E   S    + +  +  E++  +   LS+ D+   L  +S  
Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L+ KE PN+  + + F+   L++ +     +   +    +++ L         E G+   
Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEIQYDLQDFKSKIKFL--------DERGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E   D D+  L   +  ERD  F +  L ++  RY +   +   IE  Q  FM +AM
Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LALKE ++   A + Y+ LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  +   PDLF K V    +  W +F P
Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+      +L D YG E+E  Y     +    E    R I    L R ++    ETG P
Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +   +D  N  +P +H G+++SSNLCTEI  N S                          
Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     N   + ++L   + TAVR LDNVID+N + +E AK +N  +R I
Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L   +I Y+  E  +E AD+  E I+++AI AS ++A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G              +   +   +   W+EL   +K  GMRN   MA+APT + + I
Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP     +++         V                                 
Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            +      ++  A E+D    +++ S RQ+ IDQ QS+N+Y+  + + + +  IY +AW 
Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+RS+S
Sbjct: 819 KGIKSIYYVRSKS 831


>gi|160947323|ref|ZP_02094490.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270]
 gi|158446457|gb|EDP23452.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270]
          Length = 854

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/925 (29%), Positives = 435/925 (47%), Gaps = 122/925 (13%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
            Y F E I  +++IKR+    SFD SKI  AI KAF++V  +          + K L E+
Sbjct: 5   GYKFAEVIL-LRIIKRDLSEVSFDISKIENAIYKAFISVGDEDKKL------LSKRLAEE 57

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               +LQ       + +E+IQD VE +L ++ H++  + Y+LYRE+R+ +R   +  +  
Sbjct: 58  VFESILQDKAENSSISVEEIQDYVEKTLTKNNHYETLKSYILYREKRNSLRKELNSFREY 117

Query: 139 APIAPKLKI---MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
                 +++   +  D +   +   RL          L  V     L+E           
Sbjct: 118 IEDESLIEVLAKIQKDFSTEGYELDRLCRKF------LSFVKPNSTLNEKI--------- 162

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
                 LI +S  L  KE PN+  ++AR    K+  E++    +        ++Q L   
Sbjct: 163 ----ELLIKASSELTSKENPNWEYISARIYAYKIHNEIVNYEKEWHIVDFKSKIQVL--- 215

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSR 313
                 +  +    + E+    D+  L   +   RD  F Y  L ++Y RY +   +   
Sbjct: 216 -----TKASLYGEYILENYSSDDIDELEKYIDNSRDELFTYSSLDLVYKRYLICDSHKKV 270

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           IE  Q  FM +AM LA+ E ++   A + Y++LS+     +TPT+ N+     QLSSCF+
Sbjct: 271 IETMQEMFMGIAMHLAIPEKDRVSFAKKVYDVLSNLKATVATPTMSNARKPFHQLSSCFI 330

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+AND
Sbjct: 331 DTVPDTLKGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWIKLAND 390

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TAVAV+Q G R+G+   YL+ WH D+ EFL+LR N GDDR + HD+  A   P+LF +  
Sbjct: 391 TAVAVDQLGVRQGSCAVYLDVWHRDIPEFLNLRTNNGDDRMKAHDVFPAICFPNLFWRLA 450

Query: 494 TQ--NAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +  N+ W LF P EV ++      D YG+E+E  Y    ++    +    R ++   L 
Sbjct: 451 KENINSNWYLFCPHEVKEVMGFCLEDFYGEEWEEKYRLCIKEPRLDK----RILTVKDLV 506

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595
           + +L    ETG P+I  +D  N  +P  H G+++SSNLCTEI  N               
Sbjct: 507 KLILKSQVETGTPFIFNRDNANNANPNSHKGMIYSSNLCTEIMQNMKEILDVEDKILQID 566

Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL S+ L      +  + +++   + T +R LDNVID+N +  
Sbjct: 567 GEDHVVTDVKAGDFVVCNLASLVLGNI---DLKNDEEMEFVVSTMIRALDNVIDLNYYPT 623

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
             AK +N  +RAIGLG  G+  AL    I + + E +E  D+  E I++ AI  S ++ +
Sbjct: 624 PFAKITNAKYRAIGLGTSGYHHALVKNKIMWQTEEHLEFMDKVYEKINYFAIKESSKIGE 683

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G+Y  F+GS W  G                      +   W ELK++V   G+RN+  
Sbjct: 684 EKGSYKYFEGSEWQNGK--------------YFEKRDYNSKEWIELKEKVSKNGLRNAYL 729

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A+APT + + I G +  +DP     +++         V      +L     W       
Sbjct: 730 LAVAPTGSTSIIAGTTAGVDPVMMRYFLEEKKGSIIPRVAP----DLTPETFW------- 778

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                               ++  A E+D  W I++   RQ+ IDQ QSLNLY+  +   
Sbjct: 779 --------------------LYENAHEVDQTWSIKAGGVRQRHIDQGQSLNLYITTDYKM 818

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907
            ++  +   +  +GLK+ YY+RS+S
Sbjct: 819 SQILKLLILSCEVGLKSIYYIRSKS 843


>gi|282881359|ref|ZP_06290038.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304765|gb|EFA96846.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           timonensis CRIS 5C-B1]
          Length = 839

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/915 (28%), Positives = 430/915 (46%), Gaps = 123/915 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI+ AI K+F++ + +           I  + +     +  ++ 
Sbjct: 1   MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDA------TIYQMVQSVEDIVCTNHI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                ++E IQD+VE +LM++G++   + ++L+R +R+++R                   
Sbjct: 55  KQ---NVESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRI------------- 98

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSS 206
                      + +  +++   +   D   S  +++ +       G++ ++   ALI ++
Sbjct: 99  -----TEDLQDEHITEVLKHIAADFTDKEYSILLLIDKYASFSKAGMTATERMDALIKAA 153

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  +E P +  + AR L  +L + +      +   + + +M+ L         +  + 
Sbjct: 154 VELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFL--------TDRNLY 205

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
              + +     ++   A  +   R+    Y GL++L  RY +   + + IE  Q  F+ +
Sbjct: 206 GAYILQQYSKAEIEQAATFMDASRNHLLNYSGLELLIKRYVIRNFDNNPIESVQEMFLGI 265

Query: 325 AMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           A+ LA+ E + +      FYN+LS      +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 266 ALHLAMNEPQDRMMWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEGI 325

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G 
Sbjct: 326 YRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVNDTAVAVDQLGV 385

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W +
Sbjct: 386 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEENLNQDWYM 445

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           F P+EV      +L D YG+E+E  Y +             R +    + R +L    ET
Sbjct: 446 FCPNEVMTAKGYNLEDYYGEEWEKRYWDCVADTTISR----RIMPIKEIVRLILRSAVET 501

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596
           G P+   +D  N  +P  H G+++ SNLCTEI  N S  E                    
Sbjct: 502 GTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTEEDDTVVVRTVK 561

Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L         D  ++   + + VR LDNVID+N + +  AK +N T+
Sbjct: 562 PGDFVVCNLASLSLGHL---KLEDETEMREVVSSVVRALDNVIDLNFYPLPFAKITNRTY 618

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG+ G+  AL +  I + S E +   D+  E I+  AI AS ++A+++G+Y  F+G
Sbjct: 619 RSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIAKQKGSYKYFEG 678

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G              +     + +   W  L K+V   GMRN+  +AIAPT++ +
Sbjct: 679 SDWQTG--------------EYFTKRQYTSPEWQALAKKVSQQGMRNAYLLAIAPTSSTS 724

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   +  +DP  +  +++         V   L                           
Sbjct: 725 IIAATTAGVDPVMKRFFLEEKKGAMLPRVAPSL--------------------------- 757

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                D    ++ +A+ ID  W + +A  RQK IDQAQS+NLY+ +  + ++L  +Y  A
Sbjct: 758 ----SDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNYTMRQLLGLYTLA 813

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 814 WHCGVKTIYYIRSKS 828


>gi|282879358|ref|ZP_06288102.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           buccalis ATCC 35310]
 gi|281298555|gb|EFA90980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           buccalis ATCC 35310]
          Length = 839

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/916 (29%), Positives = 430/916 (46%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI+ AI K+F++ + +           I  + +     +  ++ 
Sbjct: 1   MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDA------TIYQMVQSVEDIVCTNHI 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA---QSHSKSDAPIAPKL 145
                ++E IQD+VE +LM++G++   + ++L+R +R+++R      +    DA I   L
Sbjct: 55  KQ---NVESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRIAEDLQDAHITEVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D T   ++   L                             G++ ++   ALI +
Sbjct: 112 KHIAADFTDKEYSILLLIDKYASFSK-------------------AGMTATERMDALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  +E P +  + AR L  +L + +      +   + + +M+ L         +  +
Sbjct: 153 AVELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFL--------TDRNL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + +     ++   A  +   R+    Y GL++L  RY +   + S IE  Q  F+ 
Sbjct: 205 YGAYILQQYSKAEIEQAATFMDASRNHLLNYSGLELLIKRYVIRNFDNSPIESVQEMFLG 264

Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E + +      FYN+LS      +TPTL N+     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMNEPQDRMTWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W 
Sbjct: 385 VRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEENLNQDWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +F P+EV      +L D YG+E+E  Y +             R +    + R +L    E
Sbjct: 445 MFCPNEVMTAKGYNLEDYYGEEWEKRYWDCVADTSISR----RIMPIKEIVRLILRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N S  E                   
Sbjct: 501 TGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTEEGDTVVVRTV 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D  ++   + + VR LDNVID+N + +  AK +N T
Sbjct: 561 KPGDFVVCNLASLSLGHL---KLEDETEMKEVVSSVVRALDNVIDLNFYPLPFAKITNRT 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S E +   D+  E I+  AI AS ++A+++G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIAKQKGSYKYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G              +     + +   W  L K+V   GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------EYFTKRQYTSPQWKALAKKVSQQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   +  +DP  +  +++         V   L                          
Sbjct: 724 SIIAATTAGVDPVMKRFFLEEKKGAMLPRVAPSL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    ++ +A+ ID  W + +A  RQK IDQAQS+NLY+ +  + ++L  +Y  
Sbjct: 758 -----SDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNYTMRQLLGLYTL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWHCGVKTIYYIRSKS 828


>gi|257067185|ref|YP_003153441.1| ribonucleotide-diphosphate reductase subunit alpha [Anaerococcus
           prevotii DSM 20548]
 gi|256799065|gb|ACV29720.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 842

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/913 (30%), Positives = 437/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    F+  KI +AI KAF +V+      S+  ++ ++ ++ +    + +   
Sbjct: 1   MEIIKRDGTRADFEREKIEKAIAKAFYSVD------SMISEEDLRKISSKIEKTIKEKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   V +E++QD VE +L+   +++  + ++LYR + +  R               L I+
Sbjct: 55  ADHTVTVEEVQDLVELTLIDENYYREVKSFILYRAKHNMDRKVIGDFSKYIDDKNILNII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
               T +  +       +E      +              +   ++E D+  A+  ++  
Sbjct: 115 ----TEVQADFDNQRYPIESLFFKFESF------------LKANMTEEDMLKAITRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL++++  E+  +  +        +++ L         EEG+   
Sbjct: 159 LTSKEAPDWEIIAARFLMQEINYEIEKSEERYELFDFKSKIEFL--------TEEGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326
            + E+    ++  L   + + RD  F Y GL ++  RY   +  G  +E  Q  FM +AM
Sbjct: 211 YILENYTGEEIDELEAYMDFSRDKIFTYSGLDLVRKRYLITNHKGDILEKVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEKDKIGFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 VTNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504
           AV  YL+ WH D+ EF+ LR N GDDR + HD+     +PDLF +  R   NA W +F P
Sbjct: 391 AVAVYLDIWHKDIPEFMGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450

Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV   +     D YG+EFE  Y    ++    +    R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGRALEDTYGEEFEEFY----KKLVADKDISRRTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           ++  +D  N  +P +H G+++SSNLCTEI  N S  E                       
Sbjct: 507 FVFNRDAVNRLNPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     NN     +L  T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVNNS---AELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I + + EA  E  D   E I+F+AI  S+E+A+E+GAYS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDISWQNEEAHGEFVDRVYEDINFYAIKESMEIAKEKGAYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G                  +       W++L+  VK  G+RN   MAIAPT + + I
Sbjct: 684 WETG--------------AYFDLRDYKSERWEKLRAEVKENGLRNGYLMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         V            L  +                 
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A +ID    +  A  RQK IDQAQS+N+Y+  E + ++L  IY  AW 
Sbjct: 767 --------LYENAHDIDQNISMRMAGVRQKHIDQAQSVNIYITTEYTMRQLLNIYITAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+R +S
Sbjct: 819 AGVKSIYYVRGKS 831


>gi|227501019|ref|ZP_03931068.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
 gi|227216792|gb|EEI82190.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
          Length = 842

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 280/913 (30%), Positives = 441/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   SF+  KI +AI KAF +V+      SI  +D ++ ++++    + +   
Sbjct: 1   MEIIKRDGTRASFERVKIEKAIAKAFNSVD------SIISKDDLEKMSKRIEETIREKYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              IV +E+IQD VE +L+   +++  + ++LYR + +  R               L I+
Sbjct: 55  KDHIVSVEEIQDLVELTLIDENYYREVKSFILYRAKHNMDRKIIGDFSKYISDKEVLAII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                   F+++R              + S +   E++  +   ++E D+  A+  ++  
Sbjct: 115 TR--IQTEFDNQR------------YPIESLLFKFESF--LKANMTEEDMLKAITRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL+ ++  E+  +  +        ++  L         E G+  +
Sbjct: 159 LTSKEAPDWEIIAARFLMYQINLEIEKSEERYELFDFKAKIAFL--------TENGLYGK 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326
            + E+    ++  L + + + RD  F Y GL ++  RY   +  G  IE  Q  FM +AM
Sbjct: 211 YILENYSKDEIDELESYMDFTRDDIFTYSGLDLVKKRYLITNHQGDLIEKVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEKDKISFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF +  R   NA W +F P
Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450

Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV   +     D YG+EFE  Y    ++    +    R +S   + R ++    ETG P
Sbjct: 451 HEVEKKYGKAIEDTYGEEFEDFY----KKLVEDKDISRRTMSVKDMVRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +I  +D  N  +P +H+G+++SSNLCTEI  N S  E                       
Sbjct: 507 FIFNRDAVNRLNPNKHMGMIYSSNLCTEIAQNMSPSESVSTEIIDENGDTIIVNKTRPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   D  +L  T+RT VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGKVDVN---DASELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPYAS-PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I + +     E  D   E I+++AI  S+E+A+E+GAYS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDISWQNEQAHGEFVDRVYEDINYYAIKESLEIAKEKGAYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G                  +       W+EL+  +K  G+RN   MAIAPT + + I
Sbjct: 684 WESG--------------AYFDLRDYKSQRWEELRGEIKRHGLRNGYLMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         V            L  +                 
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                    +  A +ID    +  A  RQ+ IDQAQS+N+Y+  E S ++L  IY  AW 
Sbjct: 767 --------FYENAHDIDQNISMRMAGIRQRHIDQAQSVNIYITTEYSMRQLLNIYISAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+R +S
Sbjct: 819 SGVKSIYYVRGKS 831


>gi|260912587|ref|ZP_05919118.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633299|gb|EEX51458.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 839

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 272/916 (29%), Positives = 429/916 (46%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG +  FD  KI+ AI K+F++           V+D I+++       ++ +  
Sbjct: 1   MDITKRNGSMAPFDREKIATAIKKSFISTGRTI------VEDEIRDVAIAVEQVIITNPA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                ++E IQD+VE SLMQ G +   + Y+L+R +R++ R   +          IAP L
Sbjct: 55  KQ---NVECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNKIANTLQQPEIAPAL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K +  D     +                       +  +    +   ++  D  +ALI +
Sbjct: 112 KGIAADFEPELYPIA-------------------ALAEKFMGFVKADMNGRDKLSALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E PN+  + AR L  +L+R++      +  ++   +++ L  +         +
Sbjct: 153 AVELTSAEAPNWEFIAARLLSYRLQRDLEAFEQAEDIQSFAQKVRHLASQ--------NL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + E+  D +L   A+ +  ER+    Y GL +L  RY +       +E  Q  F+ 
Sbjct: 205 YGTYIAEAYTDGELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQEMFLG 264

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E   +     +FY++LS      +TPTL N+     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMNEGENRLHWVRKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPDSLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G  I G  G + GV+ ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V Q  N  W 
Sbjct: 385 VRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMVQQDLNQEWH 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +F P+EV       L D YG E+E  Y          +    R ++   + R +L    E
Sbjct: 445 MFCPNEVLTTRGYSLEDFYGSEWEEKYRECVAD----KRLSRRTMTLKDVIRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N    E                   
Sbjct: 501 TGTPFTFNRDIVNRANPNAHNGIIYCSNLCTEIAQNMQPIEEVSNEVVTKDGDTVVVRTV 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         +   L   + T VR LDNVID+N + +  A+ +NH 
Sbjct: 561 KPGDFVVCNLASLSLGNL---PLENEAYLNDVVATVVRALDNVIDLNFYPVPYAQITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL L  I + S + ++  D+  E I+  AI AS  LA+E+G+Y+ F+
Sbjct: 618 YRSIGLGVSGYHHALALRGINWESEDHLQFVDQVFERINRAAIEASSALAKEKGSYACFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                          W +  +RVK  GMRN+  +AIAPT++ 
Sbjct: 678 GSDWQTG--------------AYFEKRNYDSPQWQQTAQRVKVQGMRNAYLLAIAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   +  +DP  Q  +++         V       L  R  W                
Sbjct: 724 SIVAATTAGLDPVMQRFFLEEKKGAMLPRVAP----ALSDRTFW---------------- 763

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A++ +  W + +A  RQ+ IDQAQS+NLY+ +  + ++L  +Y  
Sbjct: 764 -----------LYKGAYQTNQAWSMRAAGIRQRHIDQAQSVNLYITNNYTMRQLLDLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWQSGVKTIYYVRSKS 828


>gi|289548461|ref|YP_003473449.1| ribonucleoside-diphosphate reductase subunit alpha [Thermocrinis
           albus DSM 14484]
 gi|289182078|gb|ADC89322.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermocrinis
           albus DSM 14484]
          Length = 766

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 276/807 (34%), Positives = 425/807 (52%), Gaps = 87/807 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G     +  ++ ++++ AC+GL DV    +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRSGRREELDISKIRIVIDFACAGL-DVDPLELEMDAQIQFRDNITTREIQQLLIR 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF----CRY 259
           ++   +  E P++  V AR LL  L ++V      K +   + + +   PE F      Y
Sbjct: 60  TAAEKVSPETPDWTYVAARLLLYDLYKDVGHLRGYKVKDKINGKYRPYNPESFYHLIKTY 119

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318
            + G+    L E+    ++  LA  +K ERD  F Y G+++L DRY +    G  IE+PQ
Sbjct: 120 TDRGIYGGYLLENYTKEEIDQLAQYIKPERDLLFNYTGIKVLSDRYLVRDEEGRIIELPQ 179

Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M +AM L + E   E+ +   +FY++LS  +   +TPT+ N+   H QLSSCF+ TV
Sbjct: 180 EMYMLIAMTLGIAEKKEERLEWVKKFYDVLSQHYVSLATPTMMNARRTHTQLSSCFVLTV 239

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY IF  +Q+ A ++K++GGLG     +R  GA I    G S GV+P +K+ ND  V
Sbjct: 240 DDDLYDIFDNVQKAAQISKFAGGLGIYLGKIRATGAPIRKFRGASSGVLPVVKIINDVMV 299

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+Q G RKG+    L+ WH DV +FL+++ N GD+R++ HD++ A  IPDLFM+RV + 
Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVLDFLEVKTNVGDERKKAHDIHPAVAIPDLFMERVRRR 359

Query: 497 AGWTLFSPDEVS------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             WTL  P          +L D YGKEFE  Y   E++         R++ A  LW+++L
Sbjct: 360 EKWTLMDPYYCKKVKDGKNLEDFYGKEFEEVYLRLEKEL---PPYAKREVDAWELWKRLL 416

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595
           T++FETG P+I F+D  N  +P +H G+V+SSNLC EI  N S                 
Sbjct: 417 TVIFETGEPYIFFRDTANYLNPNKHCGMVYSSNLCMEIIQNMSVTTHEEDILEEDGRITH 476

Query: 596 -----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                +  VCNLGSINL   +       + LA  +   VR+LDNVI IN + I++A+ +N
Sbjct: 477 RKRSGDVVVCNLGSINLGLVYTA-----EDLAKVMPVLVRMLDNVISINFYAIKEAEYTN 531

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +RAIG+G+  +   L    I + S E ++ AD   E I+++AI AS +LA+ERG Y  
Sbjct: 532 KRYRAIGIGVSNYHYCLVKNGIQWESEEHIKFADALFERIAYYAIKASCDLAKERGKYPL 591

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS W +G+      G   E   + ++   + L W  L K VK  G+RN   +A+ PT 
Sbjct: 592 FDGSDWSKGI----FFGRTPEENQQESVKNGNHLDWIGLAKEVKEHGLRNGYLLAVMPTG 647

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + I G + S+DP +   Y + NMSG                                 
Sbjct: 648 STSLIIGATASVDPIFAKFYKEENMSGI-------------------------------- 675

Query: 831 IGNIERIPDDLKKI---HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKL 885
              + ++P ++KK    + +A+ ID  W I +A+ RQKWIDQ+QS NLY+  ++  G  L
Sbjct: 676 ---LPQVPPEIKKYFWHYKSAYHIDQEWSIRAAAARQKWIDQSQSFNLYIDPEKIDGPTL 732

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +Y+ A  +GLKT YY RS+S T +E
Sbjct: 733 SHLYQLAHQLGLKTVYYCRSKSITDIE 759


>gi|210631891|ref|ZP_03297103.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279]
 gi|210159816|gb|EEA90787.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279]
          Length = 919

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 277/974 (28%), Positives = 428/974 (43%), Gaps = 148/974 (15%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--------- 62
           E     L            + KR+G    ++P KI  A+ +AF  V G            
Sbjct: 5   ESGASVLERTAAGV-----IRKRDGRTEPYEPGKIIEAMRRAFADVYGDAGWQRSGTQAA 59

Query: 63  -----------SRSIRVQDIIKNLTEQ-----------TVTRLLQHNKSALIVHIEDIQD 100
                            ++  +  TE+            +  + +   ++ I  +EDIQD
Sbjct: 60  ANDQRPDAPAGPDGQLSRERSEAHTERPAADQEDELLALLAMVERSMSTSAIQSVEDIQD 119

Query: 101 QVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK---LKIMMDDGTLISF 157
            VE +LM+ GH ++ + Y+LYR  R++ RAA+    SD  +      L  +  D    ++
Sbjct: 120 LVERALMERGHFEVAKNYILYRHHRAEKRAARLELASDVAVDGVDDVLARIQRDFPEEAY 179

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNY 216
           +   L                            +G  E     ALI ++  L  +E P +
Sbjct: 180 DLAVLSARFRTFTG-------------------EGQDEPARLEALIRAAIELTSQEAPRW 220

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
             + AR       R++         +     +  L         ++G+    +  +    
Sbjct: 221 EFIAARLRDFAFARDLAAARSALGIETFSQLIHHL--------TDQGLYGAYILAAYSGA 272

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-- 333
           +L   A  +   RD  F Y GL +L  RY +H  + + +E PQ  F+ +A+ LA+ E   
Sbjct: 273 ELDQAATYMDPSRDELFTYSGLDLLIRRYVIHGHDHTPLESPQEMFLGIALHLAMNEPPA 332

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++      FY++LS      +TPT+ N+     QLSSCF+ TVPD L GI+ ++   A +
Sbjct: 333 QRLAWVRRFYDMLSRLEVTMATPTMSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQV 392

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +KY GG+G     VR  G  I G  G + GVI +++V NDTAVAV+Q G R+GAV  YL+
Sbjct: 393 SKYGGGMGMYLGKVRATGGSIRGFEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLD 452

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV---- 507
            WH D+ EFL+LR N GDDR + HD+  A   PDLF +   +  +  W L  P ++    
Sbjct: 453 AWHRDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDLFWRMAEESLDQQWHLMCPHDILTIK 512

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y +             R I    L R +L    ETG P+   +D 
Sbjct: 513 GYALEDSYGEEWERRYRDCVADPRIP----TRTILIKDLVRLILKSAVETGTPFAFMRDT 568

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P  H GV++ SNLCTEI  N+S                         +  VCNL 
Sbjct: 569 VNRANPNSHEGVIYCSNLCTEIAQNTSAIQEVTREVRTEDGDTVVVTTTRPGDFVVCNLA 628

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S++L         D   +   I TAVR LDNVID+N + +  A+ +NH +R+IGLG+ G+
Sbjct: 629 SLSLGRLPVE---DDAAMGRVIETAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGY 685

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD------ 717
              L    + + S E + + DE  E I++HAI AS  LA+ERGA   F+GS W       
Sbjct: 686 HHMLARRGVSWESEEHLRLVDEVFERINYHAICASERLAEERGANGVFEGSEWQSGAYFA 745

Query: 718 -QGVFPIDSIGLLAEVRDELAMNRTS--RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            +G  P+   G   E    +     +     W EL  RV   G+RN+  +A+APT++ + 
Sbjct: 746 KRGYCPLPCDGSEPEAASAVVTREGAIGSKRWGELAARVAEHGVRNAYLLAVAPTSSTSI 805

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G +  IDP  +  +++         V                                
Sbjct: 806 LSGTTPGIDPIMRKFFLEEKKGAMLPRVAP------------------------------ 835

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             +       +  A  I+  W I +A  RQ+ IDQAQS+NLY+ ++ + +++  +Y  AW
Sbjct: 836 -ELSPQTYWYYKPAHYINQHWSIRAAGMRQRHIDQAQSMNLYITNDYTLRQVLDLYIGAW 894

Query: 894 LMGLKTTYYLRSRS 907
             G+KT YY+RS+S
Sbjct: 895 RQGVKTVYYVRSKS 908


>gi|227485719|ref|ZP_03916035.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236274|gb|EEI86289.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 842

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/921 (29%), Positives = 440/921 (47%), Gaps = 116/921 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    F+  KI RAI KAF +V+      S    + ++ + ++ V  + +   
Sbjct: 1   MKIIKRDGSKVDFELEKIKRAIFKAFKSVD------STITDEKLEYIAQKIVGTIEEKFP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E++QD VE SL+   +++  + ++LYR + +  R   S           ++I+
Sbjct: 55  VDHVVTVEEVQDLVELSLIDENYYREVKSFILYRAKHNMDRKVISDFTKYVSDKDLMEII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                   F+S+R              + S     E++      +++ ++  A+I ++  
Sbjct: 115 SK--VQREFDSQR------------YPIESLYFKFESFTK--PEMNDKEVLDAVIRAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARFL  K+  E+     +        +++ L         E+G+   
Sbjct: 159 LTSKEAPDWEIIAARFLAYKINLEIRQEEERYDIYDFKSKIRFL--------TEKGLYGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E+    ++  L   L Y+RD  F Y GL ++  RY +   +G  +E  Q  FM +AM
Sbjct: 211 YILENYSSAEIDELEKHLDYDRDDIFTYSGLDLIRKRYLITSYDGRLLEKVQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A   Y++LS+     +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEEDKVSFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIETVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+     +PDLF K+V  N    W +F P
Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKQVKNNMEGDWYMFDP 450

Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV   +     D YG+EFE  Y    ++    +    R +    + R ++    ETG P
Sbjct: 451 HEVEKKYGRAIEDTYGEEFEEFY----KKLVDDKEISRRIMPIKDMVRLLIKSWSETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +I  +D  N  +P +H G+++SSNLCTEI  N S  E                       
Sbjct: 507 FIFNRDLVNKYNPNKHKGIIYSSNLCTEIAQNMSPSETVSTEIVTEDGDVVIVNKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   +  +L  T+RT VR LDNVID+N +    A+ +N  +RAI
Sbjct: 567 FVECNLASLTLGKLDVN---NPKELEETVRTVVRALDNVIDLNYYPTPYAEVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I +       E+ D   E I+++AI  SVE+A+++G+Y  F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIRWSDEKAHAELVDRVYEDINYYAIKESVEIAKDKGSYKVFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D                 +   W++L + VK  G+RN   MAIAPT + + I
Sbjct: 684 WQSGAYFTD--------------RDYTSERWEKLAEDVKKYGLRNGYLMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         V            L  +                 
Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A +ID    +  A  RQ+ +DQAQS+N+Y+  E + +++  +Y  AW 
Sbjct: 767 --------LYENAHDIDQNISMRMAGIRQRHLDQAQSVNIYITTEYTMRQILNVYLTAWE 818

Query: 895 MGLKTTYYLRSRSATSVEKST 915
            G+K+ YY+R +S    E  T
Sbjct: 819 SGVKSIYYVRGKSLEVEECDT 839


>gi|293401950|ref|ZP_06646090.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304608|gb|EFE45857.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 835

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 278/915 (30%), Positives = 438/915 (47%), Gaps = 129/915 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G + +FD  K+ +A+ KAF+A             D+  +  +Q    + Q  +
Sbjct: 3   MKIIKRDGTIQTFDSEKMIQAMKKAFVA-------------DVPMDQLKQIAMEITQEIQ 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA---AQSHSKSDAPIAPKL 145
            +  V +EDIQD VE  LM    +   + Y+LYRE+R + R       H   D  + P  
Sbjct: 50  GSAKVSVEDIQDLVEQKLMAYQFYNEAKAYILYREKRKEKRQMLLELCHEVQDEKLLPIF 109

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  D    +++   L +                        + + +   +    L+ +
Sbjct: 110 MQIQKDFD-ETYDLHALYIKFHSF-------------------LKETMGHEERLQMLMKA 149

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
              LI KE P +  + ARFL  +L +E+   + +    + + ++Q L         ++G+
Sbjct: 150 CVELISKETPKWEYIAARFLSYQLHQEINARMKQLQLTSFYEKIQYLS--------KQGL 201

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMR 323
               + ++    ++  L   +K ERD  F Y GL+++  RY L  +    +E PQ  FM 
Sbjct: 202 YGAYMLDAYQKEEIDELKRYVKDERDALFTYSGLELVVKRYLLRTHDLQLMETPQEMFMG 261

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           +AM LA+ ET +   A + Y++LS+     +TPT+ N+   + QLSSCF+ TV D L  I
Sbjct: 262 IAMHLAIPETNRVYWAKQIYDILSTLKVTMATPTMANARKPYHQLSSCFIDTVADTLANI 321

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G  G + GVI ++K+ NDTA AV+Q G 
Sbjct: 322 YKSIDNFAQISKYGGGMGLYFGKVRANGSDIRGFKGAAGGVIRWIKLVNDTATAVDQLGV 381

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF K   +  NA W L
Sbjct: 382 RQGAVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAICYPDLFWKMAKEDLNATWYL 441

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+E  Y +    A   +    R++    L R +L    ET
Sbjct: 442 MCPHEIGKVKGYQLEDFYGEEWEERYFDCVNDARISK----REMILKDLVRLILKSAVET 497

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N S                       
Sbjct: 498 GTPFTFNRDQVNKMNPNGHKGMIYCSNLCTEIAQNMSAITLTEPQIIKVDEEEIVVNKSK 557

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S++L         +  +L+  I T VR LDNVID+N + I  A+ +N  +
Sbjct: 558 PGDFVVCNLASLSLGNIDVT---NKQELSHIIHTIVRALDNVIDLNYYPIPYAEITNRQY 614

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           RAIGLG+ G+   L    + + S E ++  D   E I+ +AI AS  LA+E+G+Y  FKG
Sbjct: 615 RAIGLGVSGYHHMLVKQGLRFESEEHLQFVDTLFETINAYAIQASNVLAKEKGSYQYFKG 674

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S WD G                          W +L + V T GMRN+  +A+APT++ +
Sbjct: 675 SDWDSG--------------AYFTKRGYQNECWQKLAQDVHTYGMRNAYLLAVAPTSSTS 720

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S  +DP     +++         V      +L  +  W                 
Sbjct: 721 IIAGTSAGVDPIMNKYFLEEKKGSMIARVAP----DLNPQTFW----------------- 759

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                     ++  A +I   W++++A  RQ+ IDQAQS+NLY+ +E + + +  +Y QA
Sbjct: 760 ----------LYKNAHQIQQEWIVKAAGIRQRHIDQAQSVNLYITNEFTLRTVLNLYIQA 809

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS++
Sbjct: 810 WENGVKTLYYVRSKA 824


>gi|332297026|ref|YP_004438948.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           brennaborense DSM 12168]
 gi|332180129|gb|AEE15817.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema
           brennaborense DSM 12168]
          Length = 844

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 274/915 (29%), Positives = 430/915 (46%), Gaps = 118/915 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR G   ++D  KI  AI KAF +        ++R       L      +L +   
Sbjct: 1   MEIIKRTGKTETYDGQKIINAITKAFKSTGRDVPQTTLR------ALLTSVEEKLDRE-- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E IQD VE +LM+S      + Y+L+R++RS+ RAA+    +       +++ 
Sbjct: 53  --TVKSVEKIQDLVEQALMESLFFAEAKSYILFRQKRSEFRAARKELCA------LIRVD 104

Query: 149 MDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
             +G           ++   ++    L+ +S+K V         + ++ES+   ALI ++
Sbjct: 105 SGEGET-PLEKVFSGIQKSYQDESYSLKTLSAKYVSFSK-----ENMNESERLAALIRAA 158

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L+  E P +  +  R L    R  +     +   K+ + +++ L         E G+ 
Sbjct: 159 SELVSPEAPKWEFIAGRLLNYSFRHRLRADTERLGLKSFYDKLEYL--------TEAGMY 210

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRV 324
              + +S    ++   A  +  ERD  F Y GL +L  RY +       +E PQ  F+ +
Sbjct: 211 GSYILKSYTKAEIEEAAAFIVPERDDLFTYSGLDLLLKRYVIRTGKHVPLETPQEMFLGI 270

Query: 325 AMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           A+ LA+ E  E+      FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 271 ALHLAMNEPAERMNWVRRFYDMLSRMEVTMATPTLANARKPYHQLSSCFVDTVPDSLNGI 330

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR  G+ I G  G + G+I ++++ NDTAVAV+Q G 
Sbjct: 331 YRSIDNFAKVSKFGGGMGMYFGKVRAAGSAIRGFEGAAGGIIRWIRLVNDTAVAVDQLGV 390

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R GAV  YL+ WH D+ EFL++R N GDDR + HD+      PDLF K   +N    W L
Sbjct: 391 RAGAVAVYLDAWHRDLPEFLNIRTNNGDDRMKAHDVFPGVCYPDLFWKMAKENLDQDWYL 450

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D +G+E+E  Y +        +    R +S   + R +L    ET
Sbjct: 451 MCPHEICTVKGYHLEDFWGEEWEKRYADCVHDNRIAK----RAVSVKDIVRLVLKSAVET 506

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596
           G P++  +D  N  +P  H G+++ SNLCTEI  N S  E                    
Sbjct: 507 GTPFVFNRDTVNRANPNAHRGMIYCSNLCTEIAQNMSGIESVSTQITVQNGETVVVHTTK 566

Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L         D   L S +RTAVR LDNVID+N + +  A+ +N  +
Sbjct: 567 PGSFVVCNLASLSLGNL---PLEDTAYLQSVVRTAVRALDNVIDLNFYPVPYAEITNRAY 623

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+  AL    I + S E +  AD   E I+  A+ AS + A E+GAYS F G
Sbjct: 624 RPIGLGVSGWHHALAKRAIKWESDEHLAFADRVFETINRAAVEASSDNAAEKGAYSCFDG 683

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G                 A        W  L ++V+  GMRN+  +A+APT++ +
Sbjct: 684 SDWQTG--------------AYFAKRGYDSAEWRALAQKVRAQGMRNAYLLAVAPTSSTS 729

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  IDP  +  +++       T                                 
Sbjct: 730 IIAGTTPGIDPVMKRWFLEEKKGYMLTRTAP----------------------------- 760

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
              +  +    +  A +ID  W I S   RQ+ IDQAQS+NLY+ +E + +++  +Y  A
Sbjct: 761 --ELGPETWWYYKNAHQIDQKWSIRSCGIRQRHIDQAQSMNLYITNEYTMRQVLDLYLLA 818

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+K+ YY+RS+S
Sbjct: 819 WECGVKSVYYVRSKS 833


>gi|229816570|ref|ZP_04446869.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM
           13280]
 gi|229807905|gb|EEP43708.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM
           13280]
          Length = 913

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 281/943 (29%), Positives = 433/943 (45%), Gaps = 118/943 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAF-------MAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + KR+G    FD +KI  A+ +AF        A  G  A        +  +  E  +  +
Sbjct: 12  IKKRDGRSERFDGAKIVEAMRRAFEDVADEQAAARGLIAGHGASAPAVSADELEALLASI 71

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ----------- 132
            Q      +  +E +QD VE +LM+ GH ++ + Y+LYR ER++ RA +           
Sbjct: 72  EQAMDRDAVDCVEGVQDLVERALMERGHFEVAKSYILYRHERAEKRAVRVELARAVAGLD 131

Query: 133 ---------SHSKSDAPIAPKLKIMMDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIV 181
                    + +   +           D   +  +    R++   ++    L  +S++  
Sbjct: 132 GEIACEEGRAAAGVPSAADDDTAAAPKDHLAVELDRTLARIQRDFDDPAYDLAMLSAR-- 189

Query: 182 LSETYKNMY-DGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKK 239
               ++ +   G        ALI ++  L  +E P +  + AR L     R +  T  + 
Sbjct: 190 ----FRALTGAGQDADARLGALIRAAVELTSQEAPRWEMIAARLLDLSFMRHLAATRREL 245

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
              +          E      E G+    +  S    +L   A  +  ERD  F Y GL 
Sbjct: 246 GIASF--------GELVRYLTERGLYGDYILASYSVSELEEAAAFMVSERDELFAYSGLD 297

Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTP 356
           +L  RY +   + + +E PQ  F+ +A+ LA+ E   ++      FY++LS      +TP
Sbjct: 298 LLISRYVIRAHDHTPLESPQEMFLGIALHLAMNEEPTQRLAWVKRFYDMLSKLEVTMATP 357

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TL N+     QLSSCF+ TVPD L GI+ ++   A ++KY GG+G     VR  G  I G
Sbjct: 358 TLSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYLGKVRATGGSIRG 417

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
             G + GVI +++V NDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N GDDR + 
Sbjct: 418 FEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLNLRTNNGDDRMKA 477

Query: 477 HDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQA 529
           HD+  A   PDLF +   +  +  W L  P ++       L D YG E+E  Y +     
Sbjct: 478 HDVFPAVCYPDLFWRMAEESLDQDWHLMCPHDILQVKGYALEDFYGDEWERRYRDCVADP 537

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              +    R+I    L R +L    ETG P+   +D  N  +P  H GV++ SNLCTEI 
Sbjct: 538 RISK----RRILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNGHEGVIYCSNLCTEIA 593

Query: 590 LNSSSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N+S+ E                         VCNL S++L         D + +   I 
Sbjct: 594 QNTSAIEEVTREVVTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE---DDEVMGHVIE 650

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           TAVR LDNVID+N + +  A+ +NH +R+IGLG+ G+   L    I + S + +  ADE 
Sbjct: 651 TAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGISWESEDHLAFADEV 710

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS-IGLLAEVRDELAMNRTSRLP 745
            E I++HAI AS  LA+ERGAY  F+GS W  G +         +    E+         
Sbjct: 711 FERINYHAIRASERLAEERGAYGLFEGSDWQTGAYFAKRGYCSSSGEVAEVREGAMGSER 770

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W EL + V   G+RN+  +AIAPT++ + + G +  IDP  +  +++         V   
Sbjct: 771 WGELAEAVARNGVRNAYLLAIAPTSSTSILSGTTPGIDPIMRKFFLEEKKGSMLPRVAP- 829

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
              EL  R  W                            +  A  I+  W + +A  RQ+
Sbjct: 830 ---ELSPRTYW---------------------------YYKPAHYIEQTWSVRAAGVRQR 859

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            IDQAQS+NLY+ ++ + +++  +Y +AW  G+KT YY+RS+S
Sbjct: 860 HIDQAQSMNLYITNDYTLRQVLRLYLEAWRRGVKTIYYVRSKS 902


>gi|215401540|ref|YP_002332844.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
 gi|209484081|gb|ACI47514.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
          Length = 904

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/783 (31%), Positives = 387/783 (49%), Gaps = 55/783 (7%)

Query: 176 VSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234
           V    ++ +  +++ + G+S   ++      + ++     +YA +  R L+E L  +V  
Sbjct: 170 VDVPKLMQKIKESINENGVSFEQMKLYCADVAASMTYIHYDYALLAGRILVEDLHNKVCP 229

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
              +       + +       F   + +                  L  ++K+ RD+ ++
Sbjct: 230 CFVEVTNYLAQNNVVS---HEFNNLVVKHGAL--------------LNREIKHNRDYDYK 272

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
           Y G + L + Y L +N    E PQ   MRVA+ +   +      A+E Y L+S   F  +
Sbjct: 273 YFGFKTLTNGYLLKVNDVIAERPQHMLMRVALAIHGDD---VMSAIETYQLMSLGTFTHA 329

Query: 355 TPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +PTLF +GT  PQ+ SCFL  +  D + GI+  L E+A+++   GGLG     V      
Sbjct: 330 SPTLFAAGTCRPQMCSCFLQCIKEDSIDGIYKTLHESALISNLGGGLGLSVQSVSAQYNG 389

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
              + G    ++  L+V N+    V+QGGKRKGA+ AY+E WH ++ + L+LR+N G + 
Sbjct: 390 TTKSGG----LVSMLRVFNNMVRHVDQGGKRKGALAAYVEPWHPEIYDVLNLRRNMGSED 445

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +  D+    WIPDLFM+RV +N  W+LF P +   L D YG  FEI YE YE+      
Sbjct: 446 AKARDLMLGLWIPDLFMERVKENKEWSLFCPKKYPGLLDEYGSSFEILYEKYEK-----N 500

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
               R++ A  L+R ++    ETG P++ +KDPCN  S Q+++G++  SNLC EI     
Sbjct: 501 KLYERQVKARDLFRFIVETNVETGGPYMLYKDPCNKFSNQKNLGIIKCSNLCAEIVQYCD 560

Query: 594 SEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
            +ETAVCNL SI +          FDY  L    +  VR L+ +ID N +    A  SN 
Sbjct: 561 KDETAVCNLASIAVNKCVNVKTKTFDYVLLNRLTKIVVRNLNKIIDSNHYPTAGAANSNK 620

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G+ G   A  LL IPY S EA  +     E I F A+ AS ELA+  G Y S+
Sbjct: 621 KHRPVGVGIQGLADAFVLLDIPYDSEEARSVNYMIAETIYFSALEASCELAKIDGPYESY 680

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S   +G    D+  +                 W +L+++++  G+RNS  +A  PTAT
Sbjct: 681 ENSPLFRGTMHYDNYNIYPTD---------HLWNWSKLREKIQRHGVRNSLLVAYMPTAT 731

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            A I G ++S +P   N+Y++  ++G+F VVN +L+  L   +++   + + +   +GS+
Sbjct: 732 TAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIKALVDLNIYTPELRNKILAENGSV 791

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            NI+ IP  +K +  TA+EI    +I+ A+ R  +IDQ+QSLNL++ EP+   +  I+  
Sbjct: 792 QNIDEIPQHVKDLFKTAWEIKSKCMIDMAADRAPFIDQSQSLNLFVAEPTYSVMSSIHFY 851

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            W   LKT  YYLR++ A    + T+               +  T             EC
Sbjct: 852 TWQKQLKTGMYYLRTKPAAQATQFTVDAEAAASCGKKRKMDDDGT------------EEC 899

Query: 951 EVC 953
             C
Sbjct: 900 MSC 902


>gi|221633389|ref|YP_002522614.1| ribonucleoside-diphosphate reductase subunit alpha [Thermomicrobium
           roseum DSM 5159]
 gi|221155945|gb|ACM05072.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 770

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 325/767 (42%), Positives = 445/767 (58%), Gaps = 24/767 (3%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           ++L+ + I S    +   P   +  A  LLEK+ RE                    YPE+
Sbjct: 20  AELD-SRILSCLQQLPDRPEAEREAAALLLEKIAREADDGTPLP------------YPEH 66

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313
           F R++E G+    L   +  F L  LA  L   RD    Y  L  L DRY +    +R  
Sbjct: 67  FRRFVERGIARGALDPRLRTFQLDVLARALDPARDALLGYAALATLADRYLVRDPETRQL 126

Query: 314 IEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           +E PQA FMRVAMGLAL E    +   A+ +Y+L+SS  ++ STPTLFN+GT H QL+SC
Sbjct: 127 LERPQALFMRVAMGLALVEPPETRTSWALRWYDLMSSLRYLPSTPTLFNAGTPHHQLASC 186

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +L  V D L  I G+  E  MLAKY+GG+G   T +R  GA + G NG S G+IPFL + 
Sbjct: 187 YLAEVEDSLESILGSAYEFGMLAKYAGGIGTAVTRIRATGAPVRGINGTSGGLIPFLHLY 246

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +    +++QGG+R+G +C YLE WH++VE FLDLR+N GD  RRTH +NTA WIPD F++
Sbjct: 247 DALIASISQGGRRRGTMCVYLEPWHLEVEAFLDLRRNAGDPYRRTHQLNTALWIPDEFLR 306

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG--EIKVFRKISAVALWRKM 549
           RV  +  W LF P    +L DL G  F   Y    RQA+ G    + +R++ A  LW  +
Sbjct: 307 RVETDDLWYLFDPIVAPELPDLVGAAFSERYRELCRQAEAGMLPRRAWRRLPARELWLAI 366

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           L  L ETGHPW+TFKD  N+RS  + +GV+HSSNLCTEI L +S +E AVCNLGS+NL  
Sbjct: 367 LASLMETGHPWLTFKDAGNLRSQLRGIGVIHSSNLCTEIFLPTSRDEVAVCNLGSVNLAR 426

Query: 610 HFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           H       D+++LA+T+R A+R LDNVID N +  E+A ++N  +R +GLGLMGF   L 
Sbjct: 427 HCTPTGELDWEQLAATVRLAMRALDNVIDANLYPSERAARANQLNRPVGLGLMGFAELLA 486

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + YA P A ++AD+  EF+S+HAISAS  LA+ERGA+ +F  S W  GV PID++  
Sbjct: 487 RRAVSYAEPAAADLADQIAEFLSYHAISASCALAEERGAFPNFAFSRWAAGVLPIDTLDE 546

Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
           LA  R   + ++RT RL W+ L++RV+  GMRN   MA+APTATIA + G + S+DP Y 
Sbjct: 547 LAADRGLPVEVDRTRRLDWEPLRQRVRR-GMRNGAVMAVAPTATIALLAGTTPSLDPYYA 605

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           N++ +  +SG F  VN  LV EL++R LW E ++  L    G +  +   P DL     T
Sbjct: 606 NVFSRQTLSGKFLEVNPILVEELRRRGLW-EQLLPGLVAARGDLRAVPGCPPDLVARFPT 664

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           A+++     IE A+R QKW+D   S NLY       ++  +Y  AW  GLK+TYY   R 
Sbjct: 665 AYQVPAESYIEVAARVQKWVDMGVSRNLYHAADRPGQMSAVYLAAWRKGLKSTYYCFVRP 724

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +E+ST+     +     V        +    +SC  D  CE CQ
Sbjct: 725 RMEIEQSTVAVNKARRRPQWVQLAEREVLASD-AASCRLDGSCESCQ 770


>gi|306819884|ref|ZP_07453538.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304552131|gb|EFM40068.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 852

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/913 (28%), Positives = 434/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G +  FD +KI  AI KAF++V  +        ++ +  L+     +   +  
Sbjct: 11  LNIIKRSGQIVPFDTNKIKIAIKKAFISVGMEIE------EEKLNKLSSDVEEKSKNNFP 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E++QD VE +L++ G++ + + Y+LYR    ++R                K+ 
Sbjct: 65  KDHTVSVEEVQDLVEITLIEKGYYAVVKSYILYRASHHNLRKTLEDFTLYFDDEKIFKL- 123

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                      ++++   +E    L  + SK           + +S  +  + LI ++  
Sbjct: 124 ----------MRKIQEDFKEDAYKLSFLYSKFTSFAK-----ENMSYDEKLSMLIRAACE 168

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P +  ++ RFL  +++  +          +   +++ L         +  +   
Sbjct: 169 LTSKEAPKWEYISGRFLALQIQNTIEKETTMLDIHSFADKIRYL--------TKNKLYGP 220

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + E+    D+  L   L Y RD  F Y GL ++  RY +   +G  +E PQ  FM +AM
Sbjct: 221 YMLENYSQEDIEELEKYLDYSRDELFNYSGLNLVAKRYLIRDTDGKILESPQEMFMGIAM 280

Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            L++ E +K+   A + Y+ LS+     +TPT+ N+     QLSSCF+  VPD+L GI+ 
Sbjct: 281 HLSIPEKDKKIHYAKKLYDALSTLKVTMATPTMSNARKCFNQLSSCFIDVVPDNLDGIYR 340

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR +G+ I G  G + G+  ++K+ANDTAVAV+Q G R+
Sbjct: 341 SVTNFAQVSKHGGGMGLYFGKVRAMGSDIRGFKGVAGGITRWVKLANDTAVAVDQLGVRQ 400

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           GA   Y++ WH D  EFL LR N GDDR + HD+     +P+ F K   +  N+ W +  
Sbjct: 401 GACSVYIDLWHKDTPEFLQLRTNNGDDRMKAHDVFPGICVPNYFWKLAKEDLNSPWYMMC 460

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D YG E+E  Y +  + +   +    R IS   + R ++    ETG 
Sbjct: 461 PHEIETVKGYCLEDCYGDEWEEKYLDCVKDSKIDK----RVISVKDMVRLIIKSAVETGT 516

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSE 595
           P+I  +D  N  +P  H G+++ SNLCTEI  N                       +   
Sbjct: 517 PFIFNRDIVNKYNPNPHKGMIYCSNLCTEIAQNMEAIQSISSEVKIIDGQEIVVEMTKPG 576

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+ L         + D+L   + T +R LDNVID+N + +  A+ +N  +RA
Sbjct: 577 DFVVCNLASLVLGNIDVK---NPDELEDIVNTVIRALDNVIDLNYYPVPYAQITNQKYRA 633

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L    I + S E ++ ADE  E I++ AI AS +LA+E+G+Y  F+GS 
Sbjct: 634 IGLGTSGYHHTLVQNDIMFQSEEHLKFADELYENINYFAIKASNQLAKEKGSYKYFEGSN 693

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G                      +   W+ELK+ V+  G+RN   MAIAPT + + I
Sbjct: 694 WQDGQ--------------YFTKRNYNSKRWEELKQSVEKDGIRNGYIMAIAPTGSTSII 739

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP  +  +++         V   L      +  W                   
Sbjct: 740 AGTTAAVDPVMKRYFLEEKKGQIVPRVAPSLTP----KTFW------------------- 776

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A +ID  W+I+SA  RQ+ IDQ+QS+NLY+  E + K++  +Y  A  
Sbjct: 777 --------LYENAHDIDQTWVIKSAGIRQRHIDQSQSVNLYITTEYTMKQILQLYITACE 828

Query: 895 MGLKTTYYLRSRS 907
             +KT YY+RS+S
Sbjct: 829 QEVKTLYYVRSKS 841


>gi|256545922|ref|ZP_05473277.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398344|gb|EEU11966.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 842

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 276/913 (30%), Positives = 431/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G V  F+  KI+RAI K+F +V+      S+   + +  ++      + +   
Sbjct: 1   MEVKKRDGQVVDFEREKINRAIFKSFRSVD------SVISDENLDRISLNIEKTIKERYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE  L+++ ++K  + Y+LYR + +  R   +  ++       L I+
Sbjct: 55  KDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVLTDFEAFIDDEYTLSII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            D              I +E  +    + S  +  E++      +++  L  ALI ++  
Sbjct: 115 KD--------------INDEYDNQRYPIESLYLKFESFTK--KNMTKEALLNALIKAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARF++  +  ++  +  K        ++Q L                
Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYGIVDFRSKVQYLTSAGL--------YGS 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + ES  + DL  L   LK +R+  F Y GL ++  RY +    G  IE  Q  FM ++M
Sbjct: 211 YILESYTNKDLEELGAYLKEDRNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E ++   A + Y++LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIGEKDQVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIRNVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A  +PDLF K    N    W +F P
Sbjct: 391 AVACYLDIWHKDIPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFWKECRDNIGGDWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       + D YG+EFE  Y     +    +    R I+   L R ++    ETG P
Sbjct: 451 HEVFVKYGKSIEDTYGEEFEEFY----YKLVNDKEISKRVIAIKDLIRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           ++  +D  N  +P +H G+++SSNLCTEI  N S  E                       
Sbjct: 507 FVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIKTVDGETVIVNTTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   D ++L   + T VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGNIDVN---DKEELEEVVSTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I +      ++  D+  E I++ AI AS E+A+E+G+YS F GS 
Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLDFVDKVYEDINYFAIKASNEIAKEKGSYSCFDGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G              D           W+ LKK V   G+RN   +A+APT + + I
Sbjct: 684 WDNG--------------DYFKQRGYESERWENLKKDVHENGLRNGYLLAVAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         V            L  +                 
Sbjct: 730 SGTSAGVDPIMNKYFLEEKKGAIVPRVAP---------GLNTKTFW-------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A+ ID    + +   RQ+ IDQAQS+N+Y+  E + +++  IY  AW 
Sbjct: 767 --------LYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+R +S
Sbjct: 819 AGVKSLYYVRGKS 831


>gi|320527967|ref|ZP_08029133.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium
           moorei F0204]
 gi|320131593|gb|EFW24157.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium
           moorei F0204]
          Length = 842

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 281/915 (30%), Positives = 432/915 (47%), Gaps = 128/915 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KRNG V  +D +KI  AI K+F++V+          Q  + +L EQ   +     + 
Sbjct: 8   RIVKRNGQVVPYDGTKIVLAIEKSFLSVK------ESVDQAYLSDLLEQIEAQFDGRQE- 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V +E+IQD VE  LM++  + + + Y+LYRE+R+ +R  +              +++
Sbjct: 61  ---VDVEEIQDTVEKILMKNEKYNVAKSYILYREKRTQMRNDRLELVKLIGDEELENVLV 117

Query: 150 DDGTLIS-FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           D       ++ KRL                            +G S  D  T L  SS  
Sbjct: 118 DIQKTYPDYDLKRLYEKFSTMSK-------------------EGQSLKDRITLLTRSSAE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE PN+ ++  R L   +  ++  T  K    + + ++  +        IE+G+   
Sbjct: 159 LTTKEEPNWERIAGRLLSYSIASDLRATEEKLGLTSFYQKISYM--------IEQGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAM 326
            + E+    ++  +A  +   R+  F Y GL +L  RY +  +   + E PQ  ++ +AM
Sbjct: 211 YILENYSHKEVDEIATLIDNTRNNLFTYSGLDLLSQRYLIRSHQHVLLESPQEMYIGIAM 270

Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+KE   +     +FY+++S      +TPT  N+   + QLSSCF+ TVPD L GI+ 
Sbjct: 271 HLAMKETNNRIGWVKKFYDMMSLHKVTMATPTQANARKPYHQLSSCFIDTVPDSLDGIYH 330

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G     VR  G  I G  G S GVI +++V NDTAVAV+Q G R 
Sbjct: 331 SISNFADVSKFGGGMGMYLGKVRSRGGSIRGFEGASGGVIRWIRVINDTAVAVDQLGVRA 390

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K V +  N  W L  
Sbjct: 391 GAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVKEDMNQDWYLLD 450

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P +V       L D YG+E+E  Y          +    R +    + R +L  + ETG 
Sbjct: 451 PHDVLMVKGYCLEDFYGEEWEKRYWECVHDNRISK----RVLVLKEVVRLILKSMVETGT 506

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+  ++D  N  +P +H G+++SSNLCTEI  N S                         
Sbjct: 507 PFAFYRDAVNRANPNKHKGMIYSSNLCTEIAQNMSEVKQISRVIKTEDGDEVIVTTTKPG 566

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+ L         D  ++     T VR LDNVID+N + +  A+ +N  +R+
Sbjct: 567 DYVVCNLASLCLGNINVK---DPKEIEEVTATVVRALDNVIDLNFYPLPNAQVTNRKYRS 623

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+   L   HI + S E ++  D+  E I++ +I AS  LA+ERG+Y  F+GS 
Sbjct: 624 IGLGVSGYHHMLAKNHIMWESEEHLKFVDKVFENIAYASIKASNTLAKERGSYQYFEGSE 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G                          W ELK+ V   GMRN+  +A+APT++ + +
Sbjct: 684 WESG--------------AYFDARGYDSARWKELKEEVHATGMRNAYVLAVAPTSSTSIL 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--GN 833
            G S  +DP                V+N F + E K                 GSI    
Sbjct: 730 IGTSAGLDP----------------VMNRFFLEEKK-----------------GSILPRT 756

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
              +  D    + TA  ID  W +++A  RQ+ IDQAQS NL++ ++    +L  +Y  A
Sbjct: 757 APELSADTYWYYKTAHTIDQTWSVKAAGIRQRHIDQAQSFNLWITNDYKMSQLLQLYVLA 816

Query: 893 WLMGLKTTYYLRSRS 907
           +  G+KT YY RS++
Sbjct: 817 YDCGVKTIYYTRSKA 831


>gi|15605686|ref|NP_213062.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5]
 gi|6225952|sp|O66503|RIR1_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|2982838|gb|AAC06460.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5]
          Length = 801

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/839 (33%), Positives = 423/839 (50%), Gaps = 116/839 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++   G     +  ++ + ++ AC GL +V    + ++      DG++  +++  LI
Sbjct: 2   TMYVIKRSGRKEKLDINKIRIAIKFACEGL-NVDPLELEADAQIQFRDGITTKEIQQLLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLT----TVYKKPQKATHHEMQCLYPEYFCR 258
            ++   +  E P++    AR LL  L ++V      ++     K   +  +  Y  +   
Sbjct: 61  KTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFYS-FVKE 119

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317
           Y+E+G+    L E+  + D   LAN +K ERD  F Y G++ILYDRY +    G  IE+P
Sbjct: 120 YVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELP 179

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M +AM LA+ E    + K A +FY++LS      +TPTL N+     QLSSCF+ T
Sbjct: 180 QEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLT 239

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V DDL+ IF  +++  M++K++GGLG     +R  GA I    G S GVIP +K+ NDT 
Sbjct: 240 VDDDLFDIFDNVKKAGMISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDTM 299

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+Q G RKG+    L+ WH D+ +FL+++ N GD+R++ HD++ A  IPDLFMKR+  
Sbjct: 300 TYVDQLGMRKGSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRLKN 359

Query: 496 NAGWTLFSPD---------------------------------------EVSDLHDLYGK 516
              WTL  P                                        E   L D YG+
Sbjct: 360 REDWTLIDPYWARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFYGE 419

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           EFE  Y   E           +K+++  LW+++LT+ FETG P+I F+D  N ++P +H 
Sbjct: 420 EFEKWYLELEE---NLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHT 476

Query: 577 GVVHSSNLCTEITLNSSSE---------------------ETAVCNLGSINLLAHFANNQ 615
           G+V+SSNLC EI    S                       +  VCNLGS+NL        
Sbjct: 477 GMVYSSNLCHEIVQTMSPSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNLGKVHT--- 533

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
              +++   +   VR+LDNVI++N + I +A+ +N  +RAIG+G+  +   L    I + 
Sbjct: 534 --EEEIKEVLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWE 591

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E ++ AD+  E I+F+A+  S+ELA+ERG Y  F GS W +G+    S+  + E    
Sbjct: 592 SEEHLKFADKLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGILFGRSVEEIEEN--- 648

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            +    + LPW EL + +K  G+RN+  +A+ PT + + I G + SIDP +   Y + NM
Sbjct: 649 -SRQNGNNLPWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENM 707

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG    V   +      R  W                            + TA+ ID  W
Sbjct: 708 SGILPQVPPEV-----DRFYWH---------------------------YKTAYTIDHEW 735

Query: 856 LIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            I +A+ RQKWIDQAQSLNL++D     G +L  +Y  AW +GLKT YYLRSRSA  +E
Sbjct: 736 TIRAAAVRQKWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKTIYYLRSRSAMDIE 794



 Score = 38.3 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA 53
          + VIKR+G     D +KI  AI  A
Sbjct: 3  MYVIKRSGRKEKLDINKIRIAIKFA 27


>gi|330837705|ref|YP_004412346.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta
           coccoides DSM 17374]
 gi|329749608|gb|AEC02964.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta
           coccoides DSM 17374]
          Length = 848

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/927 (27%), Positives = 408/927 (44%), Gaps = 125/927 (13%)

Query: 26  IKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +  ++ +IKR G   ++   KI+ A+  AF +              I+  LT +    L 
Sbjct: 1   MPAMETIIKRTGKPETYQEHKITAAMKAAFASRSHTADDT------ILSRLTGEVHDELT 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI--- 141
           + + S  +V +E IQD VE  LM+  +  + + Y+LYR  R+  R  +    +  P+   
Sbjct: 55  RLHASGTMVDVELIQDTVEKILMKHEYFDVAKSYILYRSVRTKKRDDRKKILNLLPVPEL 114

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
            P L  +  D     +    L                             G+   +    
Sbjct: 115 EPVLISIQRDYADAPYQLDLLYGKFSAFSK-------------------PGMETDESLGM 155

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           L+ ++  +  ++ P++  + AR    +    +     +        +++ L  E      
Sbjct: 156 LVRAAVEMTTQDAPDWEFIAARLRYLQFSLTLKKQESRYGFSDLFGKIRFLTTEGL---- 211

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
                   + E     ++   A  +  +R+    Y  L +L  RY +    G  +E PQ 
Sbjct: 212 ----YGAYILEKYTHEEIDRAAAFIDEKRNDFLTYSALDLLLQRYVIRSHEGELLETPQE 267

Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F+ +A+ LA+ E  ++      FY+++S+     +TPTL N+   + QLSSCF+ TVPD
Sbjct: 268 LFLGIALHLAMDEKKDRLDWVRRFYDMISTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 327

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   + ++K+ GG+G  +  VR +G+ I    G + GVI ++K+ANDTAVAV
Sbjct: 328 TLDGIYRSVTNFSQVSKFGGGMGLYFGKVRAVGSAIRDFKGVAGGVIRWIKLANDTAVAV 387

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496
           +Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+      PDLF + V  +  
Sbjct: 388 DQLGMRQGAVAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDVFPGVCYPDLFWRMVENDIE 447

Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             W L  P E+       L D YG E+E  Y          +    R I    L R ++ 
Sbjct: 448 GTWNLMCPYEIYKVKGYHLEDSYGDEWEKRYHECLNDPAVPK----RPIKIKELVRMIIK 503

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------- 591
              ETG P+  F+D  N  +P  H G+++ SNLCTEI  N                    
Sbjct: 504 SGVETGTPFAFFRDAVNKANPNAHKGMIYCSNLCTEIAQNMAPITQESVEVTTEGAGGDI 563

Query: 592 -----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                +   E  VCNL S+ L     +   D  ++   +   VR LDNVID+N + +  A
Sbjct: 564 VVVEKTKPGEFVVCNLASLVLGNINVD---DPVEVEGIVTATVRALDNVIDLNMYPVPYA 620

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + +N  +RAIGLG  G+   L    + + S   + IAD   E I++ A+ AS ++A E+G
Sbjct: 621 EITNKRYRAIGLGTSGYHHMLAKKGVAWESEAHLGIADRVFEAINYWAVKASSDIAAEKG 680

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +Y+ F+GS W  G                      +   W  L+  V   GMRN+  +AI
Sbjct: 681 SYAYFEGSDWQTG--------------AYFDKRNYTGDRWAALRSTVAKQGMRNAYLIAI 726

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT++ + + G +  +DP  +  +++         V                        
Sbjct: 727 APTSSTSILAGTTAGLDPVLRRFFLEEKKKNILPRVAP---------------------- 764

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                     +      ++  A  ID +W + +A  RQ+ +DQAQSLNLY+  + S +++
Sbjct: 765 ---------ELSPKTYWLYKNAHLIDQIWTVRAAGVRQRHVDQAQSLNLYITTDMSFRQI 815

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +Y +AW  G+KT YYLRS++    E
Sbjct: 816 MNLYVEAWKNGVKTIYYLRSKALEVDE 842


>gi|229495846|ref|ZP_04389572.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317159|gb|EEN83066.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 834

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 270/912 (29%), Positives = 425/912 (46%), Gaps = 122/912 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRN  V SF   KI  A+ +AF A E +           +  L E  +T +     
Sbjct: 1   MKIIKRNKQVESFSVEKIKNALRRAFRATETRVTPA------ELNALCESILTEI----G 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   V +E +QD VE  LM SG++K+ + Y+LYR + S+ R   +  +        + ++
Sbjct: 51  SPEAVEVEMVQDIVETRLMASGYYKVAKAYILYRTKHSEAREVINRFRHYIADEEVISLL 110

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                        L+     A   L       +L   +   Y     ++    L  ++  
Sbjct: 111 K-----------ELQEQYTGAAYALD------LLYAKFYAFYKE--GAEPLQMLTKAAVE 151

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           LI  E P +  + ARFL  +LR+ +     K      + +++ L         EEG+  R
Sbjct: 152 LITPEAPKWEFIAARFLGLELRKGLEKVEEKYHLSGFYAKIKFL--------TEEGLYGR 203

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAM 326
            + E     ++  LA  +   R     Y  L ++  RY +H +   I E PQ  FM +AM
Sbjct: 204 YILEHYTKEEIDELAKVIDNSRSNLLTYSSLHLIAKRYLIHSSDHIILESPQEMFMGIAM 263

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E  + + A + Y++LS      +TPT+ N+     QLSSCF+  +PD+L GI+  
Sbjct: 264 HLAMPERHRVQWATKIYDILSQLKVTMATPTMSNARKPLSQLSSCFIDVMPDNLIGIYRT 323

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++KY GG+G     VR +G+ I G  G + GV+ ++K+ANDTA+AV+Q G R+G
Sbjct: 324 IDNFAQVSKYGGGMGIYLGKVRAVGSDIRGFKGVAGGVLKWVKLANDTAIAVDQLGVRQG 383

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           +V  YL+ WH D+ EFL +R N GDDR + HD+     IPDLF +++ +  N+ W +  P
Sbjct: 384 SVALYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGVCIPDLFWQQLEEDPNSTWYMLCP 443

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       L D +G E+   Y    + +   +    R I+   + R ++    ETG P
Sbjct: 444 HEVLSVKGYALEDYWGDEWTRRYRECLQDSRLAK----RPIAIKDMLRLIIKSAVETGTP 499

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------E 596
           +I  +D  N  +P  H G+V+ SNLC+EI  + S                         +
Sbjct: 500 FIFNRDTVNRMNPNGHCGIVYCSNLCSEIAQSQSEIRLKQQTVVLEEGEEVVIEKTIAGD 559

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L      +     +L  T+ T VR LDNVID+N + I  A+ +N   R I
Sbjct: 560 FVVCNLASLVLGNIDTESAT---ELRDTVHTIVRALDNVIDLNFYPIPYAEITNLKMRPI 616

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+   L    I + S E +   D+  E I+++AI AS  LA E+G Y+ F GS W
Sbjct: 617 GLGSSGYHHLLAKRGIAWESQEHLSFMDKLYEQINYYAIEASSLLAAEKGQYARFAGSDW 676

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G                 A    +   W +L  +V  +GMRN+  MAIAPT++ + I 
Sbjct: 677 QTGQ--------------YFAKRNYTSERWQKLAAQVAELGMRNAYLMAIAPTSSTSIIA 722

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +  IDP     +++         V      +L     W                    
Sbjct: 723 GTTAGIDPIMNRFFLEEKKGSIVPRVAP----DLSDETFW-------------------- 758

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
                  ++ TA +ID  W++++A  RQ+ +DQ+QS+NLY+  + +   +  +Y +AW  
Sbjct: 759 -------LYKTAHQIDQKWVVDAAGIRQRHLDQSQSVNLYITQDITFGGIRDLYLRAWHE 811

Query: 896 GLKTTYYLRSRS 907
           G+KT YY+RS +
Sbjct: 812 GVKTLYYIRSLA 823


>gi|271967541|ref|YP_003341737.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270510716|gb|ACZ88994.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 731

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 291/759 (38%), Positives = 419/759 (55%), Gaps = 53/759 (6%)

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
             I  +   +  +P  +++ A  L E +  E          +A    +   +     +  
Sbjct: 21  LAIEEAAARVITDPENSRIAAGLLAELIADEAAG----HGVRAFSESVAATHAAGLVQ-- 74

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318
                      + +      L   +  + D  FEY GL+ +YDRY L    +R  +E PQ
Sbjct: 75  -------DGLAAFVAAHAAELDALVAQDADDRFEYFGLRTVYDRYLLRHPRTRQVLERPQ 127

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377
            FF+RVA GL+       + A E Y L+S+  ++ S+PTLFNSG+R PQLSSCFL   P 
Sbjct: 128 HFFLRVACGLSET----VEEAAELYALMSTLSYLPSSPTLFNSGSRRPQLSSCFLLDSPR 183

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I+    + A L+KY+GG+G  WT VR  G+ I GTNG S G++P+L+  + +  A
Sbjct: 184 DELEAIYERYGQVARLSKYAGGIGIAWTRVRSRGSLIRGTNGHSNGIVPWLRTLDSSVAA 243

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+RKGA C YLE+WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV  + 
Sbjct: 244 VNQGGRRKGAACVYLESWHADVEEFLELRDNTGEEARRTHNLNLANWIPDEFMRRVEADG 303

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W+LF P EV  L DLYG            +A   E +  ++I A +L+ +M+  L +TG
Sbjct: 304 VWSLFDPKEVPHLTDLYGAA-----FEEAYRAAEAEGRYVKQIPARSLYGRMMRTLAQTG 358

Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           + W+TFKD  N  S Q  +   V+H SNLCTEI   ++  ETAVCNLGSINL AH     
Sbjct: 359 NGWMTFKDAANRTSNQTARPENVIHLSNLCTEILEVTNDAETAVCNLGSINLAAHLDGRD 418

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+ +L  T+RTAVR LD  ID+  +   +A  +N   R IGLG+MG    L  L +P+ 
Sbjct: 419 VDWTRLRRTVRTAVRFLDRTIDLGFYPTPEAGTANRKWRPIGLGVMGLADVLFALRLPFD 478

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SP+A+E++    E I+  A + S +LA ERG + S+  +    GV   D  G        
Sbjct: 479 SPQALELSTRISEEIALAAYATSSDLAVERGRHPSYDDTRAAAGVLHPDHYGA------- 531

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L+ R+   G+RNS  +AIAPTATIA+I G  + I+P   N++ +  +
Sbjct: 532 -----ARSPEWAALRDRIAETGLRNSLMIAIAPTATIASIAGCYECIEPQVSNIFKRETL 586

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG+F  VN +LV +L+ R LW   +   +K  DGS+ ++  +P+DLK ++ TA+E+    
Sbjct: 587 SGEFLQVNRYLVRDLQARGLWTPQIRDAIKRADGSVQDVPGMPEDLKSLYRTAWELPQKA 646

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           LI+ A+ R  +IDQ+QSLNL++  P+  KL  +Y  AW  GLKTTYYLRSR AT + ++T
Sbjct: 647 LIDLAAARTPYIDQSQSLNLFMATPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIAQTT 706

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                +      +  S  +   C+ CQ
Sbjct: 707 V--------------AQAVPDPEAVACSLENPEYCDACQ 731


>gi|325846379|ref|ZP_08169348.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481563|gb|EGC84603.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 842

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 279/913 (30%), Positives = 437/913 (47%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G V  F+  KI+RAI K+F +V+      S+  ++ +  ++      + +   
Sbjct: 1   MEVKKRDGKVVDFEREKINRAIFKSFRSVD------SVISEENLDKISLNIENTIKERYP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +E+IQD VE  L+++ ++K  + Y+LYR + +  R   +  +S       L I+
Sbjct: 55  KDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVLTDFESYIDDDYTLSII 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
            D      ++++R              + S  +  E++      +++  L  ALI ++  
Sbjct: 115 KD--INEEYDNQR------------YPIESLYLKFESFTK--ANMTKEALLNALIKAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  KE P++  + ARF++  +  ++  +  K        ++Q L           G+   
Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYLTS--------VGLYGA 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E+  + DL  L   LK ER+  F Y GL ++  RY +    G  IE  Q  FM ++M
Sbjct: 211 YILEAYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E +K   A + Y++LS      +TPT+ N+     QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIGEKDKVYFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A  +P+LF K    N    W +F P
Sbjct: 391 AVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPNLFWKECRDNIGGDWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       + D YG+EFE  Y    +  +  +    R I+   L R ++    ETG P
Sbjct: 451 HEVLVKYGKSIEDTYGEEFEEFYHKLVKDKEISK----RVIAIKDLIRLLIKSWTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           ++  +D  N  +P +H G+++SSNLCTEI  N S  E                       
Sbjct: 507 FVFNRDAVNKANPNKHKGIIYSSNLCTEIAQNMSPSETVNEEIKTVDGETVIVNTTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+ L     N   D  +L   + T VR LDNVID+N +    AK +N  +RAI
Sbjct: 567 FVECNLASLTLGNIDVN---DKKELEEVVSTIVRALDNVIDLNYYPTSYAKVTNKKYRAI 623

Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+   L    I +      +E  D+  E I++ AI AS E+A+E+G+YS F+GS 
Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLEFVDKVYEDINYFAIKASNEIAKEKGSYSCFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G              D           W++LKK V   G+RN   +AIAPT + + I
Sbjct: 684 WDNG--------------DYFTQRGYESERWEKLKKDVHENGLRNGYLLAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  +DP     +++         V            L  +                 
Sbjct: 730 SGTSAGVDPIMNKYFLEEKKGAIVPRVAP---------GLNTKTFW-------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A+ ID    + +   RQ+ IDQAQS+N+Y+  E + +++  IY  AW 
Sbjct: 767 --------LYENAYTIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAWE 818

Query: 895 MGLKTTYYLRSRS 907
            G+K+ YY+R +S
Sbjct: 819 AGVKSLYYVRGKS 831


>gi|303237765|ref|ZP_07324324.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           disiens FB035-09AN]
 gi|302482051|gb|EFL45087.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           disiens FB035-09AN]
          Length = 839

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 272/916 (29%), Positives = 432/916 (47%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G   S+   KI  AI K+F++V   G  R       I+ +  +    +L+H+ 
Sbjct: 1   MKIKKRDGSEESYTQQKIISAITKSFISVNSLGHQRD------IEQMALEIEAFVLEHDD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                 +E IQD VE +LM  G +   + Y+L+R +R++ R    +      D  I   L
Sbjct: 55  KR---DVESIQDIVEKTLMSHGFYDEAKSYILFRWQRNEQRKYIKNIAFNIGDNSIEEVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  D     ++   L          L                   +S+++   ALI +
Sbjct: 112 NGIRQDFRGAEYSVTLLSDKFVSFSKPL-------------------MSQTEKLAALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  ++ R L  +L + +     K    + + +++ L         +EG+
Sbjct: 153 AVELTTAECPQWEMISGRLLSFQLNKSIEALERKLNINSFYDKIKYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
             + + ++    ++V     ++ ER+  F Y GL +L  RY +   +G  +E  Q  +M 
Sbjct: 205 YGQYILDNYTKEEIVEAEKLMRPERNHLFNYSGLDLLAKRYLIRGYDGRIVENVQEMYMG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++     + Y+LLS      +TPTL N+   + QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKSDRLLWVKKIYDLLSQLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLIG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAQVSKFGGGMGMYFGKVRATGGSIRGFKGAAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +     W 
Sbjct: 385 MRQGAVAVYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEESLEQNWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF PDE+       L D YG+E+E  Y+     A        R IS   L R +L    E
Sbjct: 445 LFCPDEIKRVKGYALEDFYGEEWERRYKECIDDARLSR----RIISIKDLVRLILRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------- 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                        
Sbjct: 501 TGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAEIKEVSQVVTTENGDTVVVTTV 560

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S++L         D   +   + T VR LDNVID+N + +  AK +NH 
Sbjct: 561 KPGDFVVCNLASLSLGRL---PLEDKAAMCEKVATVVRALDNVIDLNFYPVPFAKITNHN 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL +  I + S + +E  D+  E I++ AISAS E+A+E+GAY  F+
Sbjct: 618 YRSIGLGVSGYHHALAIRGIKWESDKHLEFMDKVFETINYAAISASTEIAKEKGAYKYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                          W +L++ +   GMRN+  +A+APT++ 
Sbjct: 678 GSDWQTGK--------------YFEKRNYITSDWQQLRETIGKQGMRNAYLLAVAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G +  +DP  Q  +++         V   L                          
Sbjct: 724 SILAGTTAGLDPIMQRFFLEEKKGAMLPRVAPAL-------------------------- 757

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                 D    ++  A+ I+  W + ++  RQ+ IDQAQS+NLY+ +E + +++  +Y  
Sbjct: 758 -----SDKTYWVYKDAYHINQQWSVRASGVRQRHIDQAQSMNLYITNEYTMRQVLNLYIL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWKSGVKTIYYVRSKS 828


>gi|325831680|ref|ZP_08164897.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           sp. HGA1]
 gi|325486551|gb|EGC89000.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella
           sp. HGA1]
          Length = 845

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/915 (29%), Positives = 428/915 (46%), Gaps = 117/915 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           +Q+ KRNG V +++  KI RA+  AF +V       ++   D    L  +    +     
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASVG------TVLDDDEADRLIARIERAMASAEQ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +ED+QD VE +LM++ H++  + Y+LYRE+R+  RAA+    +  P  P L  
Sbjct: 55  GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALPG 114

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++          +            L  +S+K              ++  L   L+ ++ 
Sbjct: 115 VLASVQKEFPGEE----------YELAHLSAKFQSFAK-----PDAADGQLLAMLVKAAV 159

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + AR L+ +  R +   +  +  +    ++  L         EEG+  
Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETFAQKVAFL--------TEEGLYG 211

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
             + +     +L   A  +   R+  F Y GLQ+L DRY +    G+ +E PQ  F+ +A
Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271

Query: 326 MGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA++E   E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 272 LHLAMEERPDERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L
Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+   Y      A   +    R I    + R ++    ET
Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARIKK----RAIPIKDVIRLIIKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596
           G P+   +D  N  +P +H G+++ SNLCTEI  N  + E                    
Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567

Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L         D  +LA    +AVR LDNVID+N   +  A+ +N  +
Sbjct: 568 PGAFVVCNLASLSLGHID---MGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+G
Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +  D        R            W EL + V   G+RN   +A+APT++ +
Sbjct: 685 SGWQTGEYFRD--------RGLTDGR------WAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 820 WEEGMKTIYYVRSKS 834


>gi|282860354|ref|ZP_06269422.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           bivia JCVIHMP010]
 gi|282586852|gb|EFB92089.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           bivia JCVIHMP010]
          Length = 839

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/916 (29%), Positives = 427/916 (46%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G + ++  SKI  AI K+F + E  G       Q  I+ +  +    L ++  
Sbjct: 1   MQVTKRDGSIENYTQSKIIAAIGKSFASTENLGH------QKEIEEMALEVENFLKENTS 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                 +E+IQD+VE +LM  G     + Y+L+R +R++ R    +      D  I   L
Sbjct: 55  KR---DVENIQDKVEKTLMAHGFFDEAKSYILFRWQRNEQRKYIKNIAFNIGDNEIEKVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  D     ++   L          L                   +++ +   AL+ +
Sbjct: 112 NGIRQDFRGAEYSVTLLSDKFMSFSKPL-------------------MTQKEKLNALVKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  +  R L  +L R +     K    + + +++ L         +EG+
Sbjct: 153 AVELTTAECPQWEMIAGRLLSFQLNRSIDEVERKLGLSSFYEKLRYL--------TDEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + E     D++     +   R+  F Y GL +L  RY +H  +   IE  Q  +M 
Sbjct: 205 YGTYILEHYSQEDIMAAEKKMDTSRNHLFNYSGLDLLSKRYLIHTFDHKVIERVQEMYMG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E   + +   + Y+LLS      +TPTL N+   H QLSSCF+ TVPD L G
Sbjct: 265 IALHLAIPEKENRMEWVGKIYDLLSQLEVTMATPTLSNARKPHHQLSSCFIDTVPDSLIG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAQVSKHGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   Q  +  WT
Sbjct: 385 MRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQSLDQNWT 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y+     A        R IS   L R +L    E
Sbjct: 445 LFCPNEILRVKGYALEDFYGEEWERRYQECINDARLSR----RVISIKDLVRLILRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N ++ E                   
Sbjct: 501 TGTPFTFNRDIVNRANPNNHKGIIYCSNLCTEIAQNMAAIEEVSQEVKTENGDKVVITTV 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S++L         D + +   + T VR LDNVID+N + +  A+ +NH 
Sbjct: 561 KPGDFVVCNLASLSLGRL---PLEDKEAMCDKVATVVRALDNVIDLNFYPVPYAEITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL    I + S   +E  +E  E I++ AI AS  +A+E+G+Y  F+
Sbjct: 618 YRSIGLGVSGYHHALAKRGIKWESDRHLEFMNEVFETINYAAIKASSAIAKEKGSYEYFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                      +   W +L+  V   GMRN+  +A+APT++ 
Sbjct: 678 GSDWQTG--------------AYFKKRDYNSEAWQQLQAHVAQQGMRNAYLLAVAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G +  +DP  Q  +++         V                              
Sbjct: 724 SILAGTTAGLDPIMQRFFLEEKKGAMLPRVAP---------------------------- 755

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
               + D    ++  A+ I+  W I ++  RQ+ IDQAQS+NLY+ ++ + +++  +Y  
Sbjct: 756 ---ELSDKTYWMYKGAYYINQQWSIRASGIRQRHIDQAQSMNLYITNDYTMRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWKSGVKTIYYVRSKS 828


>gi|317488667|ref|ZP_07947207.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA]
 gi|316912226|gb|EFV33795.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA]
          Length = 845

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/915 (29%), Positives = 428/915 (46%), Gaps = 117/915 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           +Q+ KRNG V +++  KI RA+  AF +V       ++   D    L  +    +     
Sbjct: 1   MQISKRNGTVEAYEAGKIKRAMGAAFASVG------TVLDDDEADRLIARIERAMASAEQ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +ED+QD VE +LM++ H++  + Y+LYRE+R+  RAA+    +  P  P L  
Sbjct: 55  GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALPG 114

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
           ++          +            L  +S+K              ++  L   L+ ++ 
Sbjct: 115 VLASVQKEFPGEE----------YELAHLSAKFQSFAK-----PDAADGQLLAMLVKAAV 159

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P +  + AR L+ +  R +   +  +  +    ++  L         EEG+  
Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETFAQKVAFL--------TEEGLYG 211

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
             + +     +L   A  +   R+  F Y GLQ+L DRY +    G+ +E PQ  F+ +A
Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271

Query: 326 MGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA++E   E+      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI
Sbjct: 272 LHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++KY GG+G  +  VR  G+ I G +G + GVI ++++ANDTAVAV+Q G 
Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F ++   N    W L
Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+   Y      A   +    R I    + R ++    ET
Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARIKK----RAIPIKDVIRLIIKSAVET 507

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596
           G P+   +D  N  +P +H G+++ SNLCTEI  N  + E                    
Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567

Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                VCNL S++L         D  +LA    +AVR LDNVID+N   +  A+ +N  +
Sbjct: 568 PGAFVVCNLASLSLGHID---MGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQY 624

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    I + S E +  A+     + + A+ AS  +A+E+GAY  F+G
Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G +  D        R            W EL + V   G+RN   +A+APT++ +
Sbjct: 685 SGWQTGEYFRD--------RGLTDGR------WAELARDVAEHGLRNGYLLAVAPTSSTS 730

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++   +G    V      EL     W                 
Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                      +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +++  +Y  A
Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 820 WEEGMKTIYYVRSKS 834


>gi|258511566|ref|YP_003185000.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478292|gb|ACV58611.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 772

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/815 (30%), Positives = 394/815 (48%), Gaps = 85/815 (10%)

Query: 122 REERSDVRAAQSHSKSDA--PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179
           R  + ++R+ ++    +          +   DG +   +  ++   ++  C   +    +
Sbjct: 3   RTGQGELRSGRASHALEEWRDRVKTFTVEKRDGRIEPLSLDKIFAFLKRGCEAAEGCDPE 62

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238
            + ++ +  + DG+  S++    I ++       EP +  V AR LL    ++       
Sbjct: 63  RLAADVWPQLRDGMRTSEIARVAIQAAVEKTSVAEPGWQFVAARLLLFDAYKQASRN--- 119

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              +   H     + +        G     + +   + ++  LA  +K ERD+ F Y+GL
Sbjct: 120 ---RGYRHLGYGDFYQLIVELERIGRYGTYIRQHYSEDEIAELAAYIKPERDYLFNYVGL 176

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           + L DRY +   +   +E+PQ  FM V+M LA+KE +K   A  FY++LS+     +TPT
Sbjct: 177 KQLLDRYAIRNLDNGIMELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPT 236

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+     QLSSCF+    DDL  I+   +  A ++K+ GG+G     +R  G+ I   
Sbjct: 237 LSNARKPFHQLSSCFIDMPEDDLVSIYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNH 296

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G S GV+P+++  N+TAV+ NQ G R GA   YL+ WH D+ +FL LR N GD+R + H
Sbjct: 297 PGASGGVVPWIRNFNNTAVSCNQLGMRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAH 356

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRG 532
           D+     IPDLFM+RV +   W LF P EV  +      D +G+EFE  YE      +  
Sbjct: 357 DIFPGVCIPDLFMRRVEERGMWYLFCPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLP 416

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            +    +I A+ + ++++   FETG P+I F+D  N  +P +H G+V+ SNLCTEI  N 
Sbjct: 417 RV----EIPAIEIMKRIMQSAFETGTPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNM 472

Query: 593 SSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           S                     +  VCNL S+NL         D D +   +R  +R +D
Sbjct: 473 SPSRRIEETEEGGIITMKTEAGDFVVCNLSSLNLGRC-----RDLDSIREIVRRQIRAMD 527

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N + + +A  +N  +RA+GLG+ G+   L    IP+ S   V+ ADE  E+I+F 
Sbjct: 528 NVIDLNHYPVPQAAVTNRKYRAVGLGVSGYHQYLAEKGIPWESEAHVKHADELFEWINFF 587

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           AI AS+ELA+E+G Y  F+GS W  G +         ++R      R     WD L++ V
Sbjct: 588 AIEASMELAREKGPYPLFEGSDWQTGRYF--------DLRGYRT--RPGGPDWDGLRREV 637

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+RN+  +AIAPT++ + I G +  IDP Y   +++   +G                
Sbjct: 638 AEHGVRNAYLVAIAPTSSTSLIAGSTAGIDPVYARFFLEEKKNGVVP------------- 684

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                  + D     +  A  ID  W IE+ + RQ+ +DQ+QS 
Sbjct: 685 ------------------QTAPNLNDKTFWYYKEAHTIDQRWSIEACAARQRHVDQSQSF 726

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           NLY+    S ++   +Y  AW  GLKT YY+RS+S
Sbjct: 727 NLYITPGISARQFLDLYLLAWKRGLKTVYYVRSKS 761


>gi|300113308|ref|YP_003759883.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosococcus
            watsonii C-113]
 gi|299539245|gb|ADJ27562.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosococcus
            watsonii C-113]
          Length = 1336

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 345/523 (65%), Positives = 409/523 (78%), Gaps = 3/523 (0%)

Query: 433  DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
             T   V+ GGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKR
Sbjct: 816  TTTALVHNGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKR 875

Query: 493  VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            V +N GWTLFSPDE  DLHDL G+ FE AY  YE +A RGEIK F+K  AV LWRKML+M
Sbjct: 876  VAENGGWTLFSPDETPDLHDLVGQAFEAAYLGYEGKASRGEIKNFKKRRAVDLWRKMLSM 935

Query: 553  LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            LFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL  H  
Sbjct: 936  LFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDEIAVCNLGSINLPQHLD 995

Query: 613  NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +  +  KL  TI TA+R+LDNVID N +++  A++SN  HR +GLGLMGFQ AL+   I
Sbjct: 996  EDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPVGLGLMGFQDALYKRRI 1055

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            PYAS  AVE AD SME IS++AI AS +LA ERG+Y +FK SLW QG+ PIDSI LL E 
Sbjct: 1056 PYASEAAVEFADHSMEAISYYAIKASSDLAAERGSYPTFKDSLWSQGILPIDSISLLEEN 1115

Query: 733  RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            R      +R+  L WD L+++VKT+GMRNSNCMAIAPTATI+NICGVSQSI+P+YQNL+V
Sbjct: 1116 RGGYFQQDRSRTLDWDSLREQVKTVGMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFV 1175

Query: 792  KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
            KSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS   I+RIPD+LK ++ATAFEI
Sbjct: 1176 KSNLSGEFTVINPYLVRDLKAQNLWDEVMVNDLKYFDGSAQPIDRIPDELKTLYATAFEI 1235

Query: 852  DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            DP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT V
Sbjct: 1236 DPRWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSLGATHV 1295

Query: 912  EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            EKST+    G+ N +     +    S    +    D +CE CQ
Sbjct: 1296 EKSTM--TSGQANKLNAVQSSYIQTSEAPQACSILDPDCEACQ 1336



 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 237/440 (53%), Positives = 307/440 (69%), Gaps = 3/440 (0%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M   ++     E   P++    P +    +VI+RNG VT FDPSKI+ A+ KAF+A+EG 
Sbjct: 8   MSYHQEQIPDPETLDPAIRVTAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLALEGN 64

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
           GA+ S R+   +++L EQ V    +  ++   VHIE IQDQVE +LM+ GHHKI R YVL
Sbjct: 65  GAAMSKRIHQTVEDLAEQVVEACTRRLETGGTVHIEGIQDQVELALMRGGHHKIARAYVL 124

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREER+  RA  +         P +++ + DG     +  RL  I+EEAC  L +   + 
Sbjct: 125 YREERARERAQGAAKNKKKATEPPIQVTLADGHTAPLDKARLTHIIEEACQNLPETQPQA 184

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +L+ET +N++DG++E D+E ALI S+RT IEKEPNY+  TAR LL+ LRRE L+ ++   
Sbjct: 185 ILNETLRNLFDGVAEQDVERALIMSARTFIEKEPNYSYATARLLLDSLRREALSFIHGME 244

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             AT  EM   YPEYF  YI +G + +L+   +  +DL  L   L+ ERDF F YLGLQ 
Sbjct: 245 THATQQEMIERYPEYFAAYIRQGAEIQLIDSRLTQYDLTRLGQALRPERDFQFTYLGLQT 304

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYF+H  G+R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FM STPTLFN
Sbjct: 305 LYDRYFIHSGGTRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMSSTPTLFN 364

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SG+  PQLSSC+LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGK
Sbjct: 365 SGSLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGK 424

Query: 421 SQGVIPFLKVANDTAVAVNQ 440
           SQGV+PFLKV NDTAVAVNQ
Sbjct: 425 SQGVVPFLKVTNDTAVAVNQ 444


>gi|167760515|ref|ZP_02432642.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704]
 gi|167661881|gb|EDS06011.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704]
          Length = 843

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/913 (29%), Positives = 436/913 (47%), Gaps = 115/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   ++ P KI RA+  AF +V    +       +    L +    ++     
Sbjct: 1   MRISKRNGTNEAYCPEKIKRAVSLAFQSVGNLLS------DEEADRLLKNVEQKIDDRIT 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E+IQD VE +LM++ H+K  + Y+LYREER+  R ++       P   +L ++
Sbjct: 55  EEPSVSVEEIQDFVEQALMEANHYKELKSYILYREERARKRKSRKKLADKIPAFDRLALV 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D        +            L+ + +K         + D     +  + LI ++  
Sbjct: 115 LADIQKEFTQEE----------YDLEHLYAKFQAFGKP-ELND----QEKLSMLIKAAVE 159

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L  +E P +  V AR L+    +++   + +   +  + ++  L         E+G+   
Sbjct: 160 LTTQEAPQWEMVAARLLMLDFEQKLEKNMRRCHIECFYDKLAYL--------TEQGLYGD 211

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326
            + ++    ++  L   ++ +R+  F Y GL++L  RY +    G  +E PQ  F+ +AM
Sbjct: 212 YILKAYDRDEIERLVLFIEPKRNHLFTYSGLELLLGRYVIRTGKGVPMESPQEMFLGIAM 271

Query: 327 GLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+KE  ++E     FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ 
Sbjct: 272 HLAMKEKKDRESWVKRFYDMLSQLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYR 331

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+
Sbjct: 332 SIDNFAKVSKFGGGMGMYFGKVRASGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGMRQ 391

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503
           GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PD F K    N    W L  
Sbjct: 392 GAVAVYLDVWHRDLPEFLGLRTNNGDDRMKAHDVFPAVCYPDYFWKGARDNIEGDWYLMC 451

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+       L D +G+++E  Y++  R +   +    R I    + R ++    ETG 
Sbjct: 452 PHEILTVKGYALEDYFGEDWEERYQDCVRDSRIQK----RVIPIKDIIRLIIKSAVETGT 507

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595
           P+   +D  N  +P  H G+++ SNLCTEI  N S                         
Sbjct: 508 PFTFNRDTVNRANPNSHKGIIYCSNLCTEIAQNMSAIEQVEQKIEEIDGETVVVTVTKPG 567

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL S++L         D +++A    +AVR LDNVID+N   +  A+ +N  +R 
Sbjct: 568 EFVVCNLASLSLGRL---ELADEEEIAYITESAVRALDNVIDLNFFPVPYARINNRKYRP 624

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+   L    I + S E +E  ++    I + AI AS  +A+E+G+Y  F+GS 
Sbjct: 625 IGLGVSGYHHMLAKHEIAWESEEHLEFVEKVFADIHYAAIKASSRIAREKGSYEYFEGSG 684

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +  D        R            W+EL+  V   G+RN   +A+APT++ + I
Sbjct: 685 WQNGSYFAD--------RGLTDGR------WEELRAEVAEYGLRNGYLLAVAPTSSTSII 730

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  +DP     +++   +G    V      EL   + W                   
Sbjct: 731 AGTTAGLDPIMSRYFLEEKKNGLMPRVAP----ELSMDNFW------------------- 767

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                    +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +K+  +Y  AW 
Sbjct: 768 --------YYKNAHYIDQYWSVRACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWE 819

Query: 895 MGLKTTYYLRSRS 907
            G+KT YY+RS+S
Sbjct: 820 EGVKTIYYIRSKS 832


>gi|307564964|ref|ZP_07627481.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           amnii CRIS 21A-A]
 gi|307346277|gb|EFN91597.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           amnii CRIS 21A-A]
          Length = 839

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/916 (29%), Positives = 422/916 (46%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KR+G + ++ PSKI  AI K+F++ E  G       Q  I+ +  +    + ++  
Sbjct: 1   MNITKRDGSIEAYTPSKIIIAISKSFISTENTGH------QKEIEEMALEVECFIKENTD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                 +E IQD+VE +LM+ G     + Y+L+R +R++ R    +      D  I   L
Sbjct: 55  KR---DVESIQDRVEKTLMKHGFFDEAKSYILFRWQRNEQRKYIKNIAFNIGDNEIEKVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  D     ++   L          L                   +++ +   ALI +
Sbjct: 112 NGIRQDFRSAEYSVTLLSDKFMSFSKPL-------------------MTQKEKMNALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  +  R L  ++ R +     K    + + +++ L  E          
Sbjct: 153 AVELTTAECPKWEMIAGRLLSFQINRNIDEVERKLGISSFYDKIRYLTDEGL-------- 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + E+    D+ +    +   R++ F Y GL +L  RY +   +   IE  Q  +M 
Sbjct: 205 YGGYILENYSKEDIAWAEKRMDNSRNYLFNYSGLDLLSKRYLIRTFDHKIIERIQEMYMG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E   +     + Y+LLS      +TPTL N+     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKENRLSWVGKIYDLLSKLEVTMATPTLSNARKPSHQLSSCFIDTVPDSLIG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAQVSKFGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   QN    W 
Sbjct: 385 MRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQNLDQNWV 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y+              R IS   L R +L    E
Sbjct: 445 LFCPNEILRVKGYALEDFYGEEWERHYQECIDDTRLSR----RVISIKDLIRLILRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------- 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                        
Sbjct: 501 TGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAAIEEISQEVKTENGDKVVVTTV 560

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S++L         D D +   I T VR LDNVID+N + +  AK +NH 
Sbjct: 561 KPGEFVVCNLASLSLGRL---PLEDKDAMCDKINTVVRALDNVIDLNFYPVPFAKITNHR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL    I + S   +E  DE  E I++ AI AS ++A+E+G+Y  F 
Sbjct: 618 YRSIGLGVSGYHHALAKRGIKWESDRHLEFMDEVFETINYAAIKASSDIAKEKGSYEYFN 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                          W  L+++V+T GMRN+  +A+APT++ 
Sbjct: 678 GSDWQTG--------------AYFKKRDYRSDKWKHLQEKVQTQGMRNAYLLAVAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G +  +DP  Q  +++         V                              
Sbjct: 724 SILAGTTAGLDPIMQRFFLEEKKGAILPRVAP---------------------------- 755

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
               + D    ++  A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++  +Y  
Sbjct: 756 ---ELSDKTYWMYKGAYYINQQWSVRASGIRQRHIDQAQSMNLYITNDYTMRQVLNLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWKCGVKTIYYVRSKS 828


>gi|308750952|gb|ADO44435.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobacter thermophilus TK-6]
          Length = 792

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 277/830 (33%), Positives = 427/830 (51%), Gaps = 84/830 (10%)

Query: 120 LYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179
           +YR  R+  +       +       + +    G     +  ++ ++++ AC GL+ V   
Sbjct: 3   IYR--RAGYKYTSHRLLTAYERERAMYVTKRSGVGEPMDISKIRIVIDFACRGLR-VDPL 59

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238
            + ++      +G+S  +++  LI ++   +  + P++  V AR LL  L ++V      
Sbjct: 60  ELEADAQIQFREGISTKEIQQLLIRTAAEKVSPENPDWQYVAARLLLYDLYKDVGHIRGY 119

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEG----VKARLLHESMMDFDLVYLANDLKYERDFAFE 294
           K +   +   +   PE F   ++      +    L       D   LA+ +K +RD  F 
Sbjct: 120 KVKDKINGRYKPYNPESFYNLVKNYAEKGIYGEYLLREYSKEDFQALASYIKPDRDLLFN 179

Query: 295 YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHF 351
           Y G+++LYDRY +    G+ IE+PQ  +M ++M LAL E   E+ K    FY+L+S    
Sbjct: 180 YTGIKVLYDRYLVRDEEGNVIELPQEMYMLISMSLALPEKKEERIKWVKTFYDLMSKHEV 239

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+   H QLSSCF+ TV DDLY IF  +Q+   ++K++GGLG     VR  G
Sbjct: 240 SLATPTLMNARRPHTQLSSCFVLTVDDDLYDIFDNVQKAGQISKFAGGLGIYLGKVRATG 299

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I    G S GV+P +K+ ND  V V+Q G RKG+    L+ WH DV +FL+++ N GD
Sbjct: 300 SPIRKFKGASSGVLPVVKILNDVMVYVDQLGMRKGSASITLDIWHKDVMDFLEVKTNVGD 359

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL------HDLYGKEFEIAYENY 525
           +R++ HD++ A  IPD+FMKR+     WTL  P    ++       D YG+EFE  Y+  
Sbjct: 360 ERKKAHDIHPAISIPDIFMKRLKNREKWTLLDPYYCKNVKDGKNLEDFYGEEFEELYQRL 419

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           ER+         +++ A  LW+++LT++FETG P+I F+D  N  +P +H GVV+SSNLC
Sbjct: 420 ERELPPN---AKKEVDAFELWKRLLTVVFETGEPYIFFRDTANRLNPNKHCGVVYSSNLC 476

Query: 586 TEITLNSSSEETA---------------------VCNLGSINLLAHFANNQFDYDKLAST 624
            EI  N S+ +                       VCNLGSINL   +       + +   
Sbjct: 477 HEIVQNMSASQHIEDSLDPQTGEIVHRKKSGDVVVCNLGSINLGKVYTK-----EDMERV 531

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   VR+LDNVI IN + I++A+ +N  +RAIG+G+  +   L    I + S E ++ A+
Sbjct: 532 VPLLVRMLDNVISINYYAIKEAEYTNRRYRAIGIGVSNYHYCLVKNAIQWESEEHLKFAN 591

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              E I+++AI  S+ELA+ERG Y  F+GS W +GV      G  AE    ++    + L
Sbjct: 592 ALFERIAYYAIKGSMELAKERGRYPLFEGSDWSKGV----FFGRDAEENQRMSEKNGNNL 647

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W EL + VKT G+RN+  +A+ PT + + I G + S+DP +   Y + NMSG    V  
Sbjct: 648 NWIELAEEVKTYGLRNAYLLALMPTGSTSLIIGATPSVDPIFAKFYKEENMSGILPQVPP 707

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                   R  W                            + +A+ ID  W+I +AS RQ
Sbjct: 708 E-----IDRYFWH---------------------------YKSAYSIDQEWIIRAASERQ 735

Query: 865 KWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           KWIDQAQSLNL++  +   G  L  +Y  +W +GLKT YY RS+S T +E
Sbjct: 736 KWIDQAQSLNLFIDPEHVDGPTLSKLYELSWELGLKTVYYCRSKSLTEIE 785


>gi|258648773|ref|ZP_05736242.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           tannerae ATCC 51259]
 gi|260851103|gb|EEX70972.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           tannerae ATCC 51259]
          Length = 844

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 271/917 (29%), Positives = 427/917 (46%), Gaps = 118/917 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G + ++  SKI  A+  AF ++     +      + ++ L       L +     
Sbjct: 5   IIKRDGTIENYKASKIGDAVSAAFASIGEVCPA------EALETLIAAIEKEL-EGIAEN 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V +E IQD VE  LM++G ++  R ++LYREER+  RA  +  +    +    +++ D
Sbjct: 58  RSVRVEQIQDNVEIELMRAGFYRQARRFILYREERAKDRAYINEIEQTVGLEGMHRLLKD 117

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                      ++      C     + SK             ++  +   AL  ++   I
Sbjct: 118 -----------VQRDYPHLCKSFGKLVSKYHAFHKPS-----MTAEEGLHALTRAAVECI 161

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             +EP++  V  R    +    +   +     ++ + ++  L  E +            +
Sbjct: 162 TAEEPDWEFVAGRLYSFQNDLNIRRKMEGLQLQSLYDKLSYLTTEGY--------YGAYI 213

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGL 328
            ES    ++      L+ ERD    Y GL +L  RY +      ++E PQ  ++ +A+ L
Sbjct: 214 LESYTKAEIDLAETFLQPERDRLLTYSGLDLLLRRYTVRNFVHEQLETPQEMYLGIALHL 273

Query: 329 ALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
           A++ET+     V  FY++LS      +TPTL N+   H Q+SSCF+ TV D L GI+ ++
Sbjct: 274 AMRETQNRMDHVRAFYDMLSKQQVSMATPTLANARKPHHQMSSCFIDTVDDSLEGIYRSI 333

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
              A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R GA
Sbjct: 334 ANFANVSKFGGGMGLYFGKVRANGSDIRGYKGAAGGVIRWIKLANDTAVAVDQLGVRSGA 393

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPD 505
           V  YL+ WH D+ +FL LR N GDDR + HD+  A   PDLF K+V +     W L  P 
Sbjct: 394 VACYLDVWHKDILDFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKKVREGLDQSWYLMCPH 453

Query: 506 EV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           E+       L D YG E+E  Y +    A   + +V  K     L R +L    ETG P+
Sbjct: 454 EIQTIKGYALEDSYGDEWEQRYNDCVNDARITKTEVLLK----DLIRLILKSAIETGTPF 509

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------------E 596
             F+D  N  +P +H G+++SSNLC EI  N S                          +
Sbjct: 510 AFFRDHVNRMNPNKHKGIIYSSNLCVEIAQNMSPIQSVQIETMKTPEGDDIIVEKTKAGD 569

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ +         D  ++   +  AVR LDNVID+N + +E A+ +N  +R I
Sbjct: 570 FVVCNLASLVVSKIN---FDDEAEVKRVVYAAVRALDNVIDLNYYPLEYARVTNRRYRPI 626

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG+   L    I + S   +E AD+ ME I+++AI AS+ELA+E+G Y  F+GS W
Sbjct: 627 GLGIMGYHHYLAQQGIVWESEAHLEAADKLMEKINYYAIRASMELAKEKGHYEYFEGSDW 686

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G              D  +  +     W  L   V   G+RN   +AIAPT++ + I 
Sbjct: 687 QTG--------------DYFSRRQYESADWQALAADVAQAGVRNGYLLAIAPTSSTSIIA 732

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +   DP     +++         V   L                              
Sbjct: 733 GTTAGTDPVMNRYFLEEKKGATIARVAPSL------------------------------ 762

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
             D    ++ +A  ID  W I +A  RQ+ +DQAQS+NLY+ ++ + +++  +Y +AW  
Sbjct: 763 -SDKTWWLYKSAHTIDQTWSIRAAGVRQRHVDQAQSVNLYITNDFTLRQVLNLYIKAWEC 821

Query: 896 GLKTTYYLRSRSATSVE 912
           G+KT YY+RS+S    E
Sbjct: 822 GMKTIYYVRSKSLEITE 838


>gi|288817345|ref|YP_003431692.1| ribonucleotide reductase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288786744|dbj|BAI68491.1| ribonucleotide reductase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 767

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 274/805 (34%), Positives = 420/805 (52%), Gaps = 82/805 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G     +  ++ ++++ AC GL+ V    + ++      +G+S  +++  LI 
Sbjct: 1   MYVTKRSGVGEPMDISKIRIVIDFACRGLR-VDPLELEADAQIQFREGISTKEIQQLLIR 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   +  + P++  V AR LL  L ++V      K +   +   +   PE F   ++  
Sbjct: 60  TAAEKVSPENPDWQYVAARLLLYDLYKDVGHIRGYKVKDKINGRYKPYNPESFYNLVKNY 119

Query: 264 ----VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318
               +    L       D   LA+ +K +RD  F Y G+++LYDRY +    G+ IE+PQ
Sbjct: 120 AEKGIYGEYLLREYSKEDFQALASYIKPDRDLLFNYTGIKVLYDRYLVRDEEGNVIELPQ 179

Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M ++M LAL E   E+ K    FY+L+S      +TPTL N+   H QLSSCF+ TV
Sbjct: 180 EMYMLISMSLALPEKKEERIKWVKTFYDLMSKHEVSLATPTLMNARRPHTQLSSCFVLTV 239

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY IF  +Q+   ++K++GGLG     VR  G+ I    G S GV+P +K+ ND  V
Sbjct: 240 DDDLYDIFDNVQKAGQISKFAGGLGIYLGKVRATGSPIRKFKGASSGVLPVVKILNDVMV 299

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+Q G RKG+    L+ WH DV +FL+++ N GD+R++ HD++ A  IPD+FMKR+   
Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVMDFLEVKTNVGDERKKAHDIHPAISIPDIFMKRLKNR 359

Query: 497 AGWTLFSPDEVSDL------HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             WTL  P    ++       D YG+EFE  Y+  ER+         +++ A  LW+++L
Sbjct: 360 EKWTLLDPYYCKNVKDGKNLEDFYGEEFEELYQRLERELPPN---AKKEVDAFELWKRLL 416

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------ 598
           T++FETG P+I F+D  N  +P +H GVV+SSNLC EI  N S+ +              
Sbjct: 417 TVVFETGEPYIFFRDTANRLNPNKHCGVVYSSNLCHEIVQNMSASQHIEDSLDPQTGEIV 476

Query: 599 ---------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                    VCNLGSINL   +       + +   +   VR+LDNVI IN + I++A+ +
Sbjct: 477 HRKKSGDVVVCNLGSINLGKVYTK-----EDMERVVPLLVRMLDNVISINYYAIKEAEYT 531

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +RAIG+G+  +   L    I + S E ++ A+   E I+++AI  S+ELA+ERG Y 
Sbjct: 532 NRRYRAIGIGVSNYHYCLVKNAIQWESEEHLKFANALFERIAYYAIKGSMELAKERGRYP 591

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F+GS W +GV      G  AE    ++    + L W EL + VKT G+RN+  +A+ PT
Sbjct: 592 LFEGSDWSKGV----FFGRDAEENQRMSEKNGNNLNWIELAEEVKTYGLRNAYLLALMPT 647

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            + + I G + S+DP +   Y + NMSG    V          R  W             
Sbjct: 648 GSTSLIIGATPSVDPIFAKFYKEENMSGILPQVPPE-----IDRYFWH------------ 690

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDF 887
                          + +A+ ID  W+I +AS RQKWIDQAQSLNL++  +   G  L  
Sbjct: 691 ---------------YKSAYSIDQEWIIRAASERQKWIDQAQSLNLFIDPEHVDGPTLSK 735

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           +Y  +W +GLKT YY RS+S T +E
Sbjct: 736 LYELSWELGLKTVYYCRSKSLTEIE 760


>gi|160915702|ref|ZP_02077910.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991]
 gi|158432178|gb|EDP10467.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/915 (29%), Positives = 434/915 (47%), Gaps = 127/915 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++KR+G + SF   KI  A+ KAF + +          ++ +  +  + V++L + ++
Sbjct: 1   MNIVKRDGSIQSFHEEKIKDAMRKAFRSTQLPIE------EEQLHIMAVEIVSQLSEGSR 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
                 +EDIQD+VE +LM+  + ++ + Y+LYR +RS+ R A         D  +    
Sbjct: 55  ------VEDIQDKVEEALMKHSYFQVAKNYILYRSKRSEQRKALKSLVEEVQDEGLKEVF 108

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  D  +  ++                      +L++    + + ++       LI +
Sbjct: 109 FHIQKDFDMEVYDM-------------------SALLTKLRTFLKETMNSEQRMEMLIRA 149

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S  +I K+ P +  + AR    ++  ++   + +   +  + ++  L         +EG 
Sbjct: 150 SVEMISKDAPKWEYIAARLFAYRMHNDIAARMQQLGIQDFYGKLAYL--------TKEGY 201

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + E+    D+  L   L+ ERD  F Y GL+++  RY +   N   +E PQ  FM 
Sbjct: 202 YGSYILENYTQKDIAELEAYLQDERDQLFTYSGLELVVKRYLMRAHNHDILETPQEMFMG 261

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           +AM LA+ E E+   A + Y++LSS     +TPT+ N+   + QLSSCF+  V D L  I
Sbjct: 262 IAMHLAIPEQERVVWAKKIYDVLSSLKATMATPTMSNARRPYHQLSSCFIDCVDDSLMNI 321

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + +++  A ++KY GG+G  +  VR  G+ I G  G + G+I ++K+ NDTA AV+Q G 
Sbjct: 322 YKSIENFAQVSKYGGGMGLYFGKVRASGSDIRGYEGAAGGIIRWIKLVNDTATAVDQLGV 381

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501
           R+GAV  YL+ WH D+ EFL+LR N GDDR + HD+  A   PDLF +   +  NA W L
Sbjct: 382 RQGAVAVYLDVWHKDLPEFLNLRTNNGDDRMKAHDIFPALCYPDLFWRMAKEDLNATWYL 441

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG+E+E  Y          +    R++    + R +L    ET
Sbjct: 442 MCPHEIHKTMGYHLEDYYGEEWEKRYFECVNDPRISK----REMLLKDIVRLILKSAVET 497

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------------- 594
           G P+   +D  N  +P  H G+++ SNLCTEI  N                         
Sbjct: 498 GTPFAFNRDHVNRMNPNGHEGMIYCSNLCTEIAQNMKPLELLEKEIVEVDGESIVVERSK 557

Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E  VCNL S+ L         +  +L   IR  VR LDNVID+N + +  AK +N  +
Sbjct: 558 AGEFVVCNLASLTLGNLDVQ---NDSELREVIRVLVRALDNVIDLNYYPLSYAKITNRRY 614

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G+   L    + + S E +   D   E I+++A+ AS +LA+E+G+Y+ F+G
Sbjct: 615 RPIGLGVSGYHHMLAKQGLRFESEEHLAFVDTLFEKINYYALEASSDLAKEKGSYACFEG 674

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S +  G                          W  L+K+VK  G+RN   MA+APT++ +
Sbjct: 675 SDYATGS--------------YFDKRSYVDEKWWNLRKQVKENGLRNGYLMAVAPTSSTS 720

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G S  +DP     +++       T V      +L     W                 
Sbjct: 721 IISGTSAGVDPIMNKYFLEEKKGSMITRVAP----DLSPATFW----------------- 759

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                     ++  A  ID  W++ +A  RQ+ IDQAQS+NLY+ +E + +K+  +Y +A
Sbjct: 760 ----------LYKQAHLIDQSWIVRAAGVRQRHIDQAQSVNLYITNEFTLRKVLNLYIEA 809

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 810 WEQGVKTIYYIRSKS 824


>gi|323343337|ref|ZP_08083564.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           oralis ATCC 33269]
 gi|323095156|gb|EFZ37730.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           oralis ATCC 33269]
          Length = 838

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/913 (29%), Positives = 426/913 (46%), Gaps = 120/913 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG V  +D  KI+ AI K+F++     +     +  I+  +     T   + N 
Sbjct: 1   MEITKRNGSVEHYDKEKIATAIRKSFIST--GNSVADTELYAIVGAVENVINTHADRRN- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD+VE  LM+ G +   + Y+L+R +R++ R A +    +        I+
Sbjct: 58  ------VESIQDEVERKLMEKGFYNEAKSYILFRWKRTEQRKALNAIAEEIGDTAIAGIL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                 I+ +    E  +          S              G++E +  +ALI ++  
Sbjct: 112 K----GIANDFYGSEYGISALSEKFNSFSRA------------GMNEDNKLSALIKAAVE 155

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +   E P++  + AR    +L +++ T    +   + + +++ L         +E +   
Sbjct: 156 MTTAEAPDWEFIAARLASYQLNKDISTFEETEGIHSLYEKLRYL--------TDEKLYGD 207

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + ++  + ++   A+ +  ER+    Y G+ +L  RY +   +   IE  Q  F+ +A+
Sbjct: 208 YILKAYSEEEIAEAASFIVPERNNLLNYSGIDLLIKRYLMRTYSHRPIESVQEMFLGIAL 267

Query: 327 GLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
            LA+ E  +      +FY++LS      +TPTL N+     QLSSCF+ TVPD L GIF 
Sbjct: 268 HLAMNERHRRMVWVRKFYDMLSLLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEGIFR 327

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +L   A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G R+
Sbjct: 328 SLDNFAQVSKFGGGMGLYFGKVRAAGRKIRGFKGAAGGVIRWMKLVNDTAVAVDQLGMRQ 387

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503
           GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N  W +F 
Sbjct: 388 GAAAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEEDINQQWYMFC 447

Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P+E+       L D YG+E+E  Y               R +S   + R +L    ETG 
Sbjct: 448 PNEIISVKGYSLEDYYGEEWEKRYRECVDDLRISR----RVMSIKDIVRLVLRSAVETGT 503

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596
           P+   +D  N  +P  H G+++ SNLCTEI  N S  E                      
Sbjct: 504 PFTFNRDIVNRTNPNAHRGIIYCSNLCTEIAQNMSEIETVANEIRTEEGDTVVVRAAKPG 563

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S++L         D  K+ + + T VR LDNVID+N + +  A+ +NH +R+
Sbjct: 564 DFVVCNLASLSLGHL---PLEDDGKMKNIVSTVVRALDNVIDLNFYPLHYARITNHRYRS 620

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+  AL +  I + S   +E  D+  E I+  AI AS +LA E+GAY+ F GS 
Sbjct: 621 IGLGVSGYHHALAVRGIKWESERHLEFMDQVFERINRAAIEASADLAAEKGAYTYFDGSD 680

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G                          W ++ ++    GMRN+  +AIAPT++ + I
Sbjct: 681 WKTGK--------------YFTKRGYMSKEWQQIARKAAQ-GMRNAYLLAIAPTSSTSII 725

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  +DP  +  +++         V   L                             
Sbjct: 726 AGTTAGVDPVMKRFFLEEKKGAMLPRVAPNL----------------------------- 756

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
              D     +  A+ ID  W + +A  RQK +DQ+QS+NLY+ +E + +++  +Y  AW 
Sbjct: 757 --SDKTYWAYKGAYLIDQKWSMRAAGIRQKHLDQSQSVNLYITNEYTMRQVLDLYLLAWK 814

Query: 895 MGLKTTYYLRSRS 907
            G+KT YY+RS+S
Sbjct: 815 SGVKTLYYVRSKS 827


>gi|77165985|ref|YP_344510.1| ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
            19707]
 gi|254436379|ref|ZP_05049885.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Nitrosococcus oceani AFC27]
 gi|76884299|gb|ABA58980.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
            19707]
 gi|207088069|gb|EDZ65342.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Nitrosococcus oceani AFC27]
          Length = 1336

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 345/525 (65%), Positives = 411/525 (78%), Gaps = 7/525 (1%)

Query: 433  DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
             T   V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR
Sbjct: 816  TTTALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 875

Query: 493  VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            V ++ GWTLFSPDE  DLHDL G+ FE AY  YE +A RGEIK F+K  AV LWRKML+M
Sbjct: 876  VAEDGGWTLFSPDETPDLHDLVGQAFEAAYLGYEDKASRGEIKNFKKRRAVDLWRKMLSM 935

Query: 553  LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            LFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL  H  
Sbjct: 936  LFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDEIAVCNLGSINLPQHLD 995

Query: 613  NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +  +  KL  TI TA+R+LDNVID N +++  A++SN  HR +GLGLMGFQ AL+   I
Sbjct: 996  EDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPVGLGLMGFQDALYKRRI 1055

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            PYAS  AVE AD SME IS++AI AS  LA ERG+Y +F+GSLW QG+ PIDSI LL E 
Sbjct: 1056 PYASEAAVEFADHSMEAISYYAIKASSNLAAERGSYHTFEGSLWSQGLLPIDSISLLEES 1115

Query: 733  RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            R      +R+  L WD L+++VKT+GMRNSNCMAIAPTATI+NICGVSQSI+P+YQNL+V
Sbjct: 1116 RGSYFQQDRSHTLDWDSLREQVKTVGMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFV 1175

Query: 792  KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
            KSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS   I+RIP++LK ++ATAFEI
Sbjct: 1176 KSNLSGEFTVINPYLVQDLKAQNLWDEVMVNDLKYFDGSAQPIDRIPEELKTLYATAFEI 1235

Query: 852  DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            DP WL+E+ASRRQKW+DQAQSLNLY+ EP+GKKLD +Y+ AW+ GLKTTYYLRS  AT V
Sbjct: 1236 DPRWLVEAASRRQKWLDQAQSLNLYMAEPNGKKLDNLYKLAWVRGLKTTYYLRSLGATHV 1295

Query: 912  EKSTLKGVDG-KLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954
            EKST+      KLNAV              P +C+  D +CE CQ
Sbjct: 1296 EKSTMTSDQANKLNAVQSGY----IQKSEAPQACSVQDPDCEACQ 1336



 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 239/439 (54%), Positives = 309/439 (70%), Gaps = 4/439 (0%)

Query: 2   HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61
           +P +  +   E   P++    P +    +VI+RNG VT FDPSKI+ A+ KAF+A+EG G
Sbjct: 11  YPQEQTHDP-EALDPTVRVTAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLALEGNG 66

Query: 62  ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           A+ S R+   ++ LTEQ V    +  ++   VHIE IQDQVE +LM+ GHHKI R YVLY
Sbjct: 67  AAMSKRIHQTVEVLTEQVVEACTRRLETGGTVHIEGIQDQVELALMRGGHHKIARAYVLY 126

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           REER+  RA  +       I P +++ + DG     +  RL  IVEEAC  L +   + +
Sbjct: 127 REERARERAQTAAKNKKKTIEPPIQVTLADGRTAPLDKARLTRIVEEACQNLPETQPQAI 186

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
           ++ET +N++DG++E D+E ALI S+RT IEKEPNY+  TAR LL+ LRRE L+ ++    
Sbjct: 187 INETLRNLFDGVAEQDVERALIMSARTFIEKEPNYSYTTARLLLDSLRREALSFIHGMET 246

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
            AT  EM   YPEYF  YI +G + +L+   +  +DL  L   L+ ERDF F YLGLQ L
Sbjct: 247 HATQQEMIERYPEYFAAYIRQGAEIQLIDSRLTQYDLTRLGQALRPERDFQFTYLGLQTL 306

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
           YDRYF+H  G+R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FM STPTLFNS
Sbjct: 307 YDRYFIHSGGTRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMSSTPTLFNS 366

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           G+  PQLSSC+LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGKS
Sbjct: 367 GSLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGKS 426

Query: 422 QGVIPFLKVANDTAVAVNQ 440
           QGV+PFLKV NDTAVAVNQ
Sbjct: 427 QGVVPFLKVTNDTAVAVNQ 445


>gi|225850106|ref|YP_002730340.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella
           marina EX-H1]
 gi|225645946|gb|ACO04132.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella
           marina EX-H1]
          Length = 804

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 281/813 (34%), Positives = 421/813 (51%), Gaps = 61/813 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202
           ++  DGT   F  K+L   +     G+       ++ +  K +     + ++  +L+T +
Sbjct: 5   VVKRDGTEEKFQMKKLINAIFALLEGMDIPDDYEIVFKVAKELDLKIPERVTTQELDTLV 64

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI K   Y  + A+ LL+ + RE+                       F   IE 
Sbjct: 65  LKAIEQLIPKHYIYDTLAAKQLLKLINREIDKRFS-----------------SFKEAIEF 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
           GV   L    ++DFDL  L + L Y RD   +Y G+  L DRYF     G+ IE PQ FF
Sbjct: 108 GVNENLYKPELLDFDLDRLEDALDYSRDALLDYFGMTTLKDRYFTRDREGNIIEKPQWFF 167

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAMG+   E E     ++ YN +S   ++ STPTL+NSGT   Q SSC++  + D L 
Sbjct: 168 MRVAMGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVNVIDDSLE 223

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E A LAKY+GG+G D T +R  G+ IH  N KS GVIPF+K+ +    A+ QG
Sbjct: 224 SIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGVIPFIKIFDTIVNAIQQG 283

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+ +   YL+ WH+D++ FLDLR+ TG+   RT  +NTA W+PD  M+R+ +     L
Sbjct: 284 GRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAVWMPDEIMRRIKEGEPLYL 343

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  +L   +G+EF   Y     +A+ G +K+++KI +   + + L  L +TGHPW+
Sbjct: 344 FDPAECPELVTAWGEEFTKKYFECIEKAETGHLKLWKKIDSREWFNRYLFKLAKTGHPWL 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
           TFKD  N  +P    GV++SSNLCTEI++ +S E TAVC L S+NL  H        D+D
Sbjct: 404 TFKDRHNEHNPCPEYGVINSSNLCTEISIPNSPESTAVCTLASVNLAKHLNEDRTDIDWD 463

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL  TI T V  LDN++D N +  E+++K+    R +G+GLMGF   L  L IPY S  A
Sbjct: 464 KLKDTIETMVLALDNILDKNFYPSEESRKNTMDLRPLGIGLMGFAETLVELGIPYDSDTA 523

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           VE A++  +F+   A   S ELA+ERG +  ++        +P                 
Sbjct: 524 VEFAEKVAKFMRDTAYRKSEELAKERGPFPHYEEMKEKGKPYPYPP-------------- 569

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                              RN+  +AIAPTA+I+ I G + SID  + N++ +  +SG F
Sbjct: 570 ------------------RRNAVLLAIAPTASISIIAGTTSSIDSYFSNVFSRDTLSGKF 611

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHATAFEIDPMWLIE 858
            VVN  L+ +L++ D+W+E M   +K H GS+  I+ +   + K++   A+EI P   I+
Sbjct: 612 IVVNKQLMKKLEELDMWNEEMAEKIKAHGGSVQFIDELEGKIDKRLFKGAYEIHPFRQID 671

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            A+  QK++DQA S ++Y++E     +  IY  AW  GLK+TYY         EK T K 
Sbjct: 672 IAAAFQKYVDQAVSKSIYIEEELRGDMFDIYMYAWEKGLKSTYYCFIDKTVKGEKYTQKV 731

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
                         +S  S  + +  T + + E
Sbjct: 732 NKRGTRRGFGLRKAASEESETVKTQTTVEEDIE 764


>gi|226945385|ref|YP_002800458.1| ribonucleoside-diphosphate reductase subunit alpha [Azotobacter
            vinelandii DJ]
 gi|226720312|gb|ACO79483.1| ribonucleoside-diphosphate reductase, alpha subunit precursor
            [Azotobacter vinelandii DJ]
          Length = 1338

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 335/529 (63%), Positives = 416/529 (78%), Gaps = 10/529 (1%)

Query: 433  DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
             T+   + GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR
Sbjct: 813  TTSGLAHNGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 872

Query: 493  VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            V ++  WTLFSP +V DLHDL G+ FE  YE YE     G+IK+F+ I+A  LWRKML+M
Sbjct: 873  VFEDGQWTLFSPSDVRDLHDLTGRAFEERYEYYEALTQYGKIKLFKTIAAKDLWRKMLSM 932

Query: 553  LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S  E AVCNLGSINL+ H  
Sbjct: 933  LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSINLVNHIN 992

Query: 613  NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            + + D +KL+ T++TAVR+LDNVIDIN ++++ A+ +N  HR +GLG+MGFQ AL+L HI
Sbjct: 993  DGRLDTEKLSRTVKTAVRMLDNVIDINYYSVDTARNANFRHRPVGLGIMGFQDALYLQHI 1052

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
             Y S  A+  AD SME IS++AI AS +LA+ERGAYSSF+GSLW +G+ P+DS+ +LAE 
Sbjct: 1053 AYGSEAAIAFADRSMEAISYYAIQASCDLAEERGAYSSFEGSLWSRGILPLDSLDILAEQ 1112

Query: 733  RD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            R    + ++R+S L W  L++RVK  GMRNSN MAIAPTATI+NI GVSQSI+P+YQNLY
Sbjct: 1113 RGTKYIEVDRSSTLDWAPLRERVKK-GMRNSNIMAIAPTATISNIVGVSQSIEPTYQNLY 1171

Query: 791  VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            VKSN+SG+FTV+N +LV++LK R+LWD  M++DLKY+DGS+  IERIP DLK ++ATAFE
Sbjct: 1172 VKSNLSGEFTVINPYLVHDLKARELWDGVMVNDLKYYDGSVQQIERIPTDLKALYATAFE 1231

Query: 851  IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            ++  W++E+ASRRQKWIDQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ +ATS
Sbjct: 1232 VETKWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 1291

Query: 911  VEKSTLKGVDGKLNAVPVTDPN----SSTHSLGIPSSCTSD-TECEVCQ 954
             EKST+    GKLNAV          +      +P +C+ D  +CE CQ
Sbjct: 1292 AEKSTIN--TGKLNAVSSVIDESLSAAEPKPAPVPQACSIDNPDCEACQ 1338



 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/437 (52%), Positives = 305/437 (69%), Gaps = 4/437 (0%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
                    D+ P LA   P +   ++VIKRNG V ++   KI+ AI KAF+AVEG  A+
Sbjct: 10  QSPGAPRTADSTPDLAATAPGQ---LRVIKRNGTVVAYTDDKITVAITKAFLAVEGGTAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ + +  LTEQ  T   +   S   +HIE+IQDQVE +LM++G HK+ R+YV+YRE
Sbjct: 67  ASSRIHETVARLTEQVTTTFRRRMPSGGTIHIEEIQDQVELALMRAGEHKVARDYVIYRE 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  R   +  +  A   P +++   DG L+  +  RL+ I+ EAC GL +V + ++  
Sbjct: 127 ARAQERKRAAAVQEVAQPHPSIRVARADGVLVPLDMGRLDTIIGEACEGLAEVDAALIQK 186

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L       + A
Sbjct: 187 ETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESA 245

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
           THHEM  LY      Y+E+G++  LL   + +FDLV L   L +ERD  F YLGLQ LYD
Sbjct: 246 THHEMADLYARALPVYVEKGIEFELLDPKLREFDLVRLGAALDHERDQQFTYLGLQTLYD 305

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           RYFLH +G R E+PQ FFMRVAMGLA++E +KE+RA+EFYNLLSSF +M STPTLFN+GT
Sbjct: 306 RYFLHKDGIRFELPQVFFMRVAMGLAIEEPQKEERAIEFYNLLSSFDYMASTPTLFNAGT 365

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
             PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG
Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYNAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425

Query: 424 VIPFLKVANDTAVAVNQ 440
           V+PFLKV NDTAVAVNQ
Sbjct: 426 VVPFLKVVNDTAVAVNQ 442


>gi|240102479|ref|YP_002958788.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA)
           [Thermococcus gammatolerans EJ3]
 gi|239910033|gb|ACS32924.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA)
           [Thermococcus gammatolerans EJ3]
          Length = 911

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 211/929 (22%), Positives = 378/929 (40%), Gaps = 141/929 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V            D + N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDRERIRWAIKRAMLEVGVH--------DDKLLNRVVRRVVRRINELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +    +            
Sbjct: 57  GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKKILNKDR--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  L    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SLNALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I  E      + R L E++    L  +         ++    + +   R           
Sbjct: 129 IRNEKGEIIESPRELFERVA--TLAVIPDLLYDERVYDKNGKHEQDLSRVKYYLEHFEEF 186

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325
                                     +G   L   +F  +     E+ +   M+V+    
Sbjct: 187 DGRY---------------------SIGRFKLNKYHFERLVNLYRELAEKGRMKVSIDEF 225

Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
             M       + E    E++ L++   FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LGMLENGAFDDYESEVEEYFRLMTGQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + AM+ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG 
Sbjct: 286 MKAAHDVAMIQKSGGGTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGV 345

Query: 444 RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R+GA    LE WH D+E+F+  + KN G +     +++   W  + F + +     + L 
Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALRDGKRYPLV 403

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                              +  ++I   +L+ ++  M +    P + 
Sbjct: 404 NPRT---------------------------GEKVKEIDPKSLFEELAFMAWSKADPGVI 436

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           F D  N R+  +    G + ++N C E  L     E   CNL SINL             
Sbjct: 437 FFDVINRRNVLEPAKGGPIRATNPCGEEPLY----EYESCNLASINLAKFVKYDDEGKPY 492

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+D+ A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY 
Sbjct: 493 FDWDEYAYVIQKVAKYLDNAIDVNRFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYN 552

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E      ++ E+++F+A   SVE A++RG +  ++ S +  G  P++           
Sbjct: 553 SEEGFAFMRKATEYLTFYAYKYSVEAAKKRGTFPLYEKSRYKDGELPVE----------G 602

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                   LPWDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS  
Sbjct: 603 FYHREIWNLPWDELVEEIKKHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 662

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G+F  V+     ELK+R LW + ++  +  + GS+  +E IP+D++++  T+ ++  + 
Sbjct: 663 VGEFYYVDPVFEAELKKRGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLD 722

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----S 910
            I + +  Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    S
Sbjct: 723 HILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYS 782

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           VE    K V  K +   V    +   +  
Sbjct: 783 VEGEKRKRVPAKPSRYAVEKLKAVVEAEP 811


>gi|307722071|ref|YP_003893211.1| ribonucleoside-diphosphate reductase class Ia subunit alpha
           [Sulfurimonas autotrophica DSM 16294]
 gi|306980164|gb|ADN10199.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfurimonas autotrophica DSM 16294]
          Length = 788

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 277/819 (33%), Positives = 430/819 (52%), Gaps = 104/819 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G     +  +++     A  GL +VS   +  +   +  DG++  +++  LI
Sbjct: 1   MITVIKRNGRTEPLDISKIQKYTSAAVKGLGNVSQSELEVDAQIHFRDGITSKEIQETLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V +R  L  L  +V                   Y +    + + 
Sbjct: 61  KTAVDKIDIDAPNWTFVASRLFLFNLYHQVNGFTG--------------YCKLEKYFEKG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
             + R+L      +DL  L   +K ERD  F YLG++ LYDRY +     + IE+PQ  F
Sbjct: 107 EKEGRILLGLKEMYDLDELEKHIKPERDLQFNYLGIKTLYDRYLIKDRDSNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA +E  +++ A++FYN++S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQREENRQEWAIKFYNMISKFEVMLATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF A +E AML+K+ GG+G DWT VR +G++I G    + G IPFLK+ ND A+AV+Q 
Sbjct: 227 GIFDAYKEMAMLSKFGGGIGWDWTQVRSMGSYIDGHKNAAGGTIPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WHID+ +FLDL+KN+G++RRR HD+  + W+ D+FMKRV ++  WTL
Sbjct: 287 GTRKGAIAVYLEPWHIDINDFLDLKKNSGEERRRAHDLFPSLWLNDMFMKRVEEDGIWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  +L ++YG+EF   Y   E+     E  +  K+ A  LW+K+LT  FETG P++
Sbjct: 347 FDPYDTRELTNMYGEEFNKRYLELEQD----ESIIKEKVKAKDLWKKILTSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 403 CFKDNANRANPNDHYGIIRSSNLCTEIFQNTQPNHYKIKFIFENGESVSYEENEMVTVDS 462

Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                         +    NL +   +       +   + TA+R
Sbjct: 463 GITKPAKKVTALDSLGGLPIFVVEKEKVDGSTAVCNLASINLSRVNTKKDIDRIVPTAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID+N + +EK K++N   R+IGLG+MG    L      + S E  +  DE ME +
Sbjct: 523 CLDNVIDLNFYPVEKVKRTNMRSRSIGLGVMGEAQMLAEAGTMWGSQEHFDKIDEIMESV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            ++A+SAS +LA E+G+Y  F+GS W +G+ P D          +      S   WDEL+
Sbjct: 583 CYNAVSASSDLAAEKGSYPEFEGSKWSRGIMPQDHANAEVVNLVDRGGLFASTYEWDELR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +VK  GMRN   MA+APT++I+ + G +Q+I+P ++  + + N+SG   VV        
Sbjct: 643 AKVKKQGMRNGYLMAVAPTSSISILTGTTQAIEPVFKRKWSEENLSGLIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D    +  A++++   LI++A+ RQKWIDQ 
Sbjct: 695 -----------------------VPNLSPDTWSYYTPAYDLNQTVLIKAAAIRQKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QSLN+++   + SG+ L+ IY  AW +GLK+TYYLRS+S
Sbjct: 732 QSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQS 770


>gi|237733861|ref|ZP_04564342.1| ribonucleotide-diphosphate reductase subunit alpha [Mollicutes
           bacterium D7]
 gi|229382942|gb|EEO33033.1| ribonucleotide-diphosphate reductase subunit alpha [Coprobacillus
           sp. D7]
          Length = 838

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 266/916 (29%), Positives = 439/916 (47%), Gaps = 123/916 (13%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K + + KRNG    +D +KI  AI KAF ++          ++ +I ++ +  +  +  
Sbjct: 1   MKKMLIQKRNGLFQDYDNNKIETAIKKAFCSLSETIKDD--ELKKMIADIEKHIIADM-- 56

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                    +E IQD VE +LM+ G+ ++ + Y+LYR++ ++ R       +        
Sbjct: 57  --------SVEAIQDLVEETLMKHGYLQVAKAYILYRQKHTEQRLIIDELLALLGDQNLK 108

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K+++           ++           Q+  S  +L   +K  Y +G+S  +    L+ 
Sbjct: 109 KVLL-----------KIHKDYP------QEEYSLQLLLVKFKTFYKEGMSHFEALKMLMK 151

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           +S  LI KE P +  ++ARFL   + ++V   +    +   +  +  L         ++G
Sbjct: 152 ASVELISKEAPKWEMISARFLTYDVNQQVDQKMNTAGRYTFYERINYL--------AQQG 203

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFM 322
              + + ES    ++  L   +   R+  F Y GL+++  RY   + +   IE PQ  FM
Sbjct: 204 YYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQNHDREIIEKPQEMFM 263

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA+ E+ + K A E Y++LS+     +TPT+ N+     Q+SSCF+ TV D L G
Sbjct: 264 SIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAG 323

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K  GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV+Q G
Sbjct: 324 IYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLG 383

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WT 500
            R+GA   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +    W 
Sbjct: 384 VRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLEASWY 443

Query: 501 LFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  P E+ ++      D YG+E+E  Y          +    R ++   + R ++  L E
Sbjct: 444 MMCPHEIHEVKGYYLEDCYGEEWERKYYECVEDDRIPK----RVMTVKEIVRLIIKSLVE 499

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N  + E                   
Sbjct: 500 TGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETIIVEKT 559

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S+ L         + D+L   I   +R LDNVID+N + I  AK +N  
Sbjct: 560 KPGDFVVCNLASLTLGHLDVL---NDDELRHVISVVIRALDNVIDLNYYPIPFAKITNQK 616

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L  L + + S E ++  ++  E I++ A+ AS +LA+E+G+YS F 
Sbjct: 617 YRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSYSLFN 676

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS ++ G                    R     W  L+ ++K  G+RN   +AIAPT++ 
Sbjct: 677 GSDFETG--------------AYFIKRRYQSKAWQNLQAKIKENGLRNGYLLAIAPTSST 722

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G + ++DP  +  +++       T V      +L     W                
Sbjct: 723 SIIAGTTAAVDPIMKKYFMEEKKGSMITRVAP----DLDSETFW---------------- 762

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A  ID  W++++A  RQ+ +DQ+QS+NLY+ +E + +KL  +Y +
Sbjct: 763 -----------LYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFRKLLNLYIK 811

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 812 AWEYGVKTLYYVRSQS 827


>gi|333030472|ref|ZP_08458533.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741069|gb|EGJ71551.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 835

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 271/925 (29%), Positives = 431/925 (46%), Gaps = 131/925 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRN  V  F   KI RAI+ AF +++          + + ++  E     +  + +
Sbjct: 1   MKIIKRNRQVEDFTYDKIKRAIVAAFHSLQ----------RSVSEHELEIICDLISVNLE 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
            +  V +E +QD VE  LM+ GH+K  + Y+LYR+ R+  R   +  +        ++++
Sbjct: 51  DSDYVDVETVQDLVETVLMKRGHYKEAKAYILYRDRRTACREMINQFRQTITDDDTIELL 110

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFSS 206
            D           ++    +    L        L   Y++ Y  DG         L+ ++
Sbjct: 111 QD-----------IQNEFGQKQYDL------QFLYSKYRSFYKADGNP----LKILMKAA 149

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             LI  + PN+  + +R L  +L +E+     +    + + +M  L         ++ + 
Sbjct: 150 VELITPDAPNWEFIASRLLAVELEKEIQQAERELGLTSLYKKMNYL--------TQQNLY 201

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRV 324
              + ++    ++  L+  +K  R+    Y  L +L  RY   + +   +E PQ  FM +
Sbjct: 202 GSYMLKNYSQAEVEELSKYMKTSRNQLLTYSSLHLLSKRYLIQNYSHHLLERPQEMFMGI 261

Query: 325 AMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           AM LA+ E  +K   A   Y++LS+     +TPT+ N+     QLSSCF   +PD L GI
Sbjct: 262 AMHLAIPEGEKKVCWAKRIYDVLSTLKVTMATPTMSNARKPLSQLSSCFEDVMPDSLVGI 321

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           +  L   A ++K+ GG+G     VR +G+ I G  G + G++ ++K+ NDTA+AV+Q G 
Sbjct: 322 YRTLTNFAQVSKFGGGMGIYIGKVRAVGSDIRGFKGVAGGILKWVKLCNDTAIAVDQLGV 381

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+G+V  YL+ WH D+ EFL +R N GDDR + HD+     IPD F ++V  N    W L
Sbjct: 382 RQGSVAIYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGICIPDYFWEQVKTNMEGDWYL 441

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+      +L D YG E++  Y          +    R I    + R ++    ET
Sbjct: 442 MCPHEIMTMKGYNLEDTYGDEWKQKYLECVNDHRIPK----RIIPIKEMVRLIIKSAVET 497

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------------- 595
           G P+I  +D  N  +P +H GV++ SNLCTEI  N S+                      
Sbjct: 498 GTPFIFNRDLVNNLNPNKHQGVIYCSNLCTEIAQNQSAIQDVRRTVRLENGDEIIVEETK 557

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+ L         D ++L   I T VR LDNVID+N + I  A+ +N   
Sbjct: 558 AGDFVVCNLASLVLGNIDVE---DSEELQGIIHTIVRALDNVIDLNFYPIPYAQITNQKM 614

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG  G+   L    + + S E +   D+  E I+++ I AS +LA+E+G YS F  
Sbjct: 615 RPIGLGTSGYHHLLAQKGLRWESDEHLAYMDKVYEKINYYTIEASNQLAKEKGVYSFFDK 674

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G              D   +   +   W  L   V   GMRN   +AIAPT++ +
Sbjct: 675 SDWQTG--------------DYFKLRGYASEEWKHLATNVAKNGMRNGYLLAIAPTSSTS 720

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +   DP                V+N + + E K                 GSI  
Sbjct: 721 IIAGTTAGTDP----------------VMNRYFLEEKK-----------------GSIVP 747

Query: 834 --IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
                + D    ++ TA +ID  W+I++A  RQ+ +DQ+QS+NLY+  E + +KL  +Y 
Sbjct: 748 RVAPELSDSTFWLYKTAHQIDQSWVIDAAGVRQRHLDQSQSVNLYITQEFTFRKLLNLYL 807

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
           +AW  G+KT YY+RS+S    E  T
Sbjct: 808 RAWEKGVKTLYYVRSQSLEVEECET 832


>gi|212224967|ref|YP_002308203.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus
           onnurineus NA1]
 gi|212009924|gb|ACJ17306.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus
           onnurineus NA1]
          Length = 910

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 208/929 (22%), Positives = 384/929 (41%), Gaps = 141/929 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V        +R + ++  +  + V + +     
Sbjct: 5   KVMKRDGRIVPFDKERIKWAIQRAMLEV-------GVRDEKLLNRVVRR-VVKRVNELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM+ G   + + Y+LYR++++++R  +    +            
Sbjct: 57  GQVPHIENIQDIVELELMRVGLFDVAKAYILYRKKKAEIREEKKKILNKDK--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  +    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SINALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I  E      + R L E++   V+       ++    + +  + +      +   K    
Sbjct: 129 IRNEKGEIIESPRELFERVATLVVIPDLLYDERVF--DREGNHEQDLSNVEKYMEKLDEY 186

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325
              +                      +G   L   +F  +     E+ Q   M+V+    
Sbjct: 187 DRKL---------------------SIGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEV 225

Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
             M       + E    E++ L++S  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 IGMLENGAFDKYEDEIEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + AM+ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG 
Sbjct: 286 MKAAHDVAMIQKMGGGTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGV 345

Query: 444 RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R+GA    LE WH D+E+F+  + KN G +     +++   W    F + + +   + L 
Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEKNIGTNVLANFNISVGIW--SDFWEALREGKRYPLI 403

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                              +  ++I   +L+ ++  M +    P + 
Sbjct: 404 NPRT---------------------------GEKVKEIDPKSLFEELAFMAWAKADPGVI 436

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           F D  N R+  +      + ++N C E  L     E   CNL SINL             
Sbjct: 437 FFDVINRRNVLEPAKGEKIRATNPCGEEPLY----EYESCNLASINLAKFVKYDEEGKPY 492

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+D+ A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L I Y 
Sbjct: 493 FDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYN 552

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   ++ E+++F+A   SVE A++RG +  ++ + +  G  P++           
Sbjct: 553 SKEGYDFMRKATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEGY--------- 603

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                   LPWDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS  
Sbjct: 604 -YHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 662

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G+F  V+     ELK+R LW + ++  +  + GS+  +E IP+D++++  T+ +I  + 
Sbjct: 663 VGEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHWLD 722

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----S 910
            I + +  Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    S
Sbjct: 723 HILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYS 782

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           VE    + V  K +A  V    +   +  
Sbjct: 783 VEGEKRQRVKAKPSAYAVEKLKAVVEAEP 811


>gi|167756570|ref|ZP_02428697.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402]
 gi|167702745|gb|EDS17324.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402]
          Length = 846

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 266/916 (29%), Positives = 439/916 (47%), Gaps = 123/916 (13%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K + + KRNG    +D +KI  AI KAF ++          ++ +I ++ +  +  +  
Sbjct: 9   VKKMLIQKRNGLFQDYDNNKIETAIKKAFCSLSETIKDD--ELKKMIADIEKHIIADM-- 64

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                    +E IQD VE +LM+ G+ ++ + Y+LYR++ ++ R       +        
Sbjct: 65  --------SVEAIQDLVEETLMKHGYLQVAKAYILYRQKHTEQRLIIDELLALLGDQNLK 116

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204
           K+++           ++           Q+  S  +L   +K  Y +G+S  +    L+ 
Sbjct: 117 KVLL-----------KIHKDYP------QEEYSLQLLLVKFKTFYKEGMSHFEALKMLMK 159

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           +S  LI KE P +  ++ARFL   + ++V   +    +   +  +  L         ++G
Sbjct: 160 ASVELISKEAPKWEMISARFLTYDVNQQVDQKMNTAGRYTFYERINYL--------AQQG 211

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFM 322
              + + ES    ++  L   +   R+  F Y GL+++  RY   + +   IE PQ  FM
Sbjct: 212 YYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQNHDREIIEKPQEMFM 271

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA+ E+ + K A E Y++LS+     +TPT+ N+     Q+SSCF+ TV D L G
Sbjct: 272 SIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAG 331

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K  GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV+Q G
Sbjct: 332 IYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLG 391

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WT 500
            R+GA   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +    W 
Sbjct: 392 VRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLEASWY 451

Query: 501 LFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  P E+ ++      D YG+E+E  Y          +    R ++   + R ++  L E
Sbjct: 452 MMCPHEIHEVKGYYLEDCYGEEWERKYYECVEDDRIPK----RVMTVKEIVRLIIKSLVE 507

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+   +D  N  +P  H G+++ SNLCTEI  N  + E                   
Sbjct: 508 TGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETIIVEKT 567

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S+ L         + D+L   I   +R LDNVID+N + I  AK +N  
Sbjct: 568 KPGDFVVCNLASLTLGHLDVL---NDDELRHVISVVIRALDNVIDLNYYPIPFAKITNQK 624

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L  L + + S E ++  ++  E I++ A+ AS +LA+E+G+YS F 
Sbjct: 625 YRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSYSLFN 684

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS ++ G                    R     W  L+ ++K  G+RN   +AIAPT++ 
Sbjct: 685 GSDFETG--------------AYFIKRRYQSKAWQNLQAKIKENGLRNGYLLAIAPTSST 730

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G + ++DP  +  +++       T V      +L     W                
Sbjct: 731 SIIAGTTAAVDPIMKKYFMEEKKGSMITRVAP----DLDSETFW---------------- 770

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                      ++  A  ID  W++++A  RQ+ +DQ+QS+NLY+ +E + +KL  +Y +
Sbjct: 771 -----------LYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFRKLLNLYIK 819

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 820 AWEYGVKTLYYVRSQS 835


>gi|288801823|ref|ZP_06407265.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica D18]
 gi|288335865|gb|EFC74298.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica D18]
          Length = 839

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 267/916 (29%), Positives = 431/916 (47%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG V  ++  KIS AI K+F++     +     +  ++       V + ++ N 
Sbjct: 1   MNITKRNGEVEVYNNEKISIAIKKSFISTGKDISD--SEIAGMVSE-----VEQFIKENP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS---KSDAPIAPKL 145
                 +EDIQ++VE  LM  GH+   + Y+L+R +R++ R A ++      D  +A  L
Sbjct: 54  ELRT--VEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINYIVWTADDRELADVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  +    S++   L+                            G+S+ D   ALI +
Sbjct: 112 HSVAREYRERSYSMVTLQEKFSSFTK-------------------PGMSQKDSIDALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  ++AR L  +  +++     +   K  + +             EEG+
Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEKKITRLEEELGLKTFYRK--------VKYMTEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + ++  + ++   A  +  ER+    Y GL +L  RY +    G  IE  Q  F+ 
Sbjct: 205 YGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYTGKVIERVQEMFLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++       Y+LLS      +TPTL NS     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKEDRLTWVRRIYDLLSKLEVTMATPTLSNSRKSSHQLSSCFIDTVPDSLDG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W+
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNWS 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +             R IS   + R +L    E
Sbjct: 445 LFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR----RVISIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                       +
Sbjct: 501 TGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVVVTTT 560

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S++L         D +K+   + T VR LDNVI++N + +  A+ +N  
Sbjct: 561 RPGEFVVCNLASLSLGRL---PLEDEEKMKEKVATVVRALDNVINLNFYPVPYAQLTNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS  LA+E+G+Y  F+
Sbjct: 618 YRSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSNLAKEKGSYQFFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                          W +++K V   GMRN+  +A+APT++ 
Sbjct: 678 GSDWQTG--------------AYFDKRGYDSAEWQDVRKTVALQGMRNAYLLAVAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  +DP  +  +++         V                              
Sbjct: 724 SIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP---------------------------- 755

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
               + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++  +Y  
Sbjct: 756 ---ELSDETYWMYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILDLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWKEGVKTIYYVRSKS 828


>gi|302344782|ref|YP_003813135.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|302149042|gb|ADK95304.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 839

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/916 (29%), Positives = 432/916 (47%), Gaps = 125/916 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG V  ++  KIS AI K+F++     +       + I  +  +   + ++ N 
Sbjct: 1   MNITKRNGEVEVYNNEKISIAIKKSFISTGKDIS------DNEIAGMVSEV-EQFIKENP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS---KSDAPIAPKL 145
                 +EDIQ++VE  LM  GH+   + Y+L+R +R++ R A ++      D  +A  L
Sbjct: 54  ELRT--VEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINYIVWTADDRELADVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  +    S++   L+                            G+S+ D   ALI +
Sbjct: 112 HSVAREYRERSYSMVTLQEKFSSFTK-------------------PGMSQKDSIDALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  ++AR L  +  +++     +   K  + +             EEG+
Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEKKITRLEEELGLKTFYRK--------VKYMTEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + ++  + ++   A  +  ER+    Y GL +L  RY +   +G  IE  Q  F+ 
Sbjct: 205 YGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLG 264

Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +A+ LA+ E  ++       Y+LLS      +TPTL NS     QLSSCF+ TVPD L G
Sbjct: 265 IALHLAMPEKEDRLMWVRRIYDLLSKLEVTMATPTLSNSRKPSHQLSSCFIDTVPDSLDG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q G
Sbjct: 325 IYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500
            R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W+
Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDMNQNWS 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LF P+E+       L D YG+E+E  Y +             R IS   + R +L    E
Sbjct: 445 LFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR----RVISIKDIVRLVLRSAVE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592
           TG P+   +D  N  +P  H G+++ SNLCTEI  N                       +
Sbjct: 501 TGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVVVTTT 560

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E  VCNL S++L         D +K+   + T VR LDNVI++N + +  A+ +N  
Sbjct: 561 RPGEFVVCNLASLSLGRL---PLEDEEKMKEKVATVVRALDNVINLNFYPVPYAQLTNQR 617

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R+IGLG+ G+  AL    I + S E +E  D+  E I+  AI AS  LA+E+G+Y  F+
Sbjct: 618 YRSIGLGISGYHHALAKRRIKWESEEHLEFMDKVFETINRAAILASSNLAKEKGSYQFFE 677

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G                          W +++K V   GMRN+  +A+APT++ 
Sbjct: 678 GSDWQTGT--------------YFDKRGYDSAEWQDVRKTVALQGMRNAYLLAVAPTSST 723

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G +  +DP  +  +++         V                              
Sbjct: 724 SIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP---------------------------- 755

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
               + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++  +Y  
Sbjct: 756 ---ELSDETYWMYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILDLYLL 812

Query: 892 AWLMGLKTTYYLRSRS 907
           AW  G+KT YY+RS+S
Sbjct: 813 AWKEGVKTIYYVRSKS 828


>gi|163781847|ref|ZP_02176847.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883067|gb|EDP76571.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 767

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 271/802 (33%), Positives = 414/802 (51%), Gaps = 76/802 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++   G     +  ++ + +E A  GL +V    + ++      DG++  +++  LI 
Sbjct: 1   MEVVKRSGKREQLDINKIRIALEFAFKGL-NVDPLELETDAQIQFRDGITTEEIQAVLIR 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE- 262
           ++   +  E P++    AR LL  L ++V      + +     + +    E F  +I   
Sbjct: 60  TAAEKVSPETPDWQFAAARLLLYDLYKKVAHIRGYEVRDELSKDYKPYNTEGFYEFINRF 119

Query: 263 ---GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318
              G+    L +   + D+  LA  +K ERD  F Y G++IL DRY      G  IE+PQ
Sbjct: 120 VGEGIYGDYLLKHYSESDIRDLAKHIKPERDLYFNYTGIKILTDRYLARDEDGRIIELPQ 179

Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M ++M LA+ E   ++ K A EFY+LLS      +TPTL N+     QLSSCF+ TV
Sbjct: 180 EMYMLISMTLAIPEKEGDRVKWAKEFYDLLSEHLITVATPTLMNARRPFTQLSSCFILTV 239

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            DDLY IF  +Q+ A ++K++GGLG     +R  GA I    G S G+IP +KV ND   
Sbjct: 240 DDDLYDIFDNVQKAAQISKHAGGLGIYIGKLRATGAPIRKFKGASSGIIPVVKVINDVMT 299

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V+Q G RKG+    L+ WH D+ +FL+++ N GD+R++ HD++ A  IPDLFMKRV   
Sbjct: 300 YVDQLGMRKGSASITLDIWHKDILDFLEVKTNAGDERKKAHDIHPAISIPDLFMKRVKNR 359

Query: 497 AGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             WTL  P     V D  +L     E   E YER          +++ A  LW+++LT+ 
Sbjct: 360 EKWTLLDPYYTKNVRDGKNLEDLWGEAFEEEYERLEKELPEDAKKEVDAFELWKRLLTVA 419

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595
           FETG P++ F+D  N  +P +H G+V+SSNLC EI  N S                    
Sbjct: 420 FETGEPYLFFRDHANRINPNKHAGMVYSSNLCHEIVQNMSPTKHLGKELDPETGEIVHRK 479

Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNLGS+NL   +       + +   +   VR+LDNVI++N + I +A+ +N  
Sbjct: 480 KSGDVVVCNLGSVNLGKVYTK-----ETMEQVVPKLVRLLDNVIEMNYYAIPEAEYTNKR 534

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIG+G+  +   L    + + S + ++ AD+  E + F+AI  S+ELA+ERG Y  F+
Sbjct: 535 YRAIGIGVSNYHYCLVKNGVNWESEDHLKFADKLFELLGFYAIKGSMELAKERGKYRLFE 594

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W +G+F       L E   E   +    LPW +L + V+  G+RNS  +A+ PT + 
Sbjct: 595 GSDWSRGIFFGRKAEELEENSKENGND----LPWKDLAEDVRENGIRNSYLLALMPTGST 650

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G + S+DP +   Y + NMSG    V          R  W                
Sbjct: 651 SLILGATPSVDPIFAKYYKEENMSGILPQVPPE-----IDRFFWH--------------- 690

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYR 890
                       + +A+ ID  W++ +A+ RQKWIDQAQSLNL++  ++  G  L  IY+
Sbjct: 691 ------------YKSAYNIDQEWVVRAAAVRQKWIDQAQSLNLFIDPEKIDGPTLSKIYQ 738

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
            AW +GLKT YYLRS+S T +E
Sbjct: 739 LAWELGLKTIYYLRSKSITDIE 760



 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAF--MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
          ++V+KR+G     D +KI  A+  AF  + V+        ++Q      TE+    L++
Sbjct: 1  MEVVKRSGKREQLDINKIRIALEFAFKGLNVDPLELETDAQIQFRDGITTEEIQAVLIR 59


>gi|325268391|ref|ZP_08135023.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           multiformis DSM 16608]
 gi|324989245|gb|EGC21196.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella
           multiformis DSM 16608]
          Length = 840

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 265/917 (28%), Positives = 437/917 (47%), Gaps = 126/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +++ +KIS AI K+F++   + A       + I  +  +    +     
Sbjct: 1   MEIIKRNGEKEAYNNNKISIAIKKSFISTGKEIA------DNEIAGMVGEVEQFIT---D 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
           +  +  +EDIQ++VE  LM+ GH+   + Y+L+R +R++ R A ++      D  +A  L
Sbjct: 52  NPGLRTVEDIQNRVEKCLMEHGHYDEAKNYILFRYQRNEQRQAINYIAWAADDRQLADVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  +    S++   L+                            G+S  D   ALI +
Sbjct: 112 HRVAREYRERSYSMVTLQEKFASFSK-------------------PGMSHRDAIDALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  ++AR L  +  +++     +   K  + +             EEG+
Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEQKISRLEEELGLKTFYQK--------VRYMTEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + ++  + ++   A+ ++ +R+    + GL +L  RY +    G  +E  Q  F+ 
Sbjct: 205 YGDYILQNYGEEEINEAADFMQPDRNELLNFSGLDLLLKRYVIKSYAGKVLERVQEMFLG 264

Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +A+ LAL E   ++       Y+LLS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 265 IALHLALPEKKEDRLLWVRRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLD 324

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 325 GIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 384

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W
Sbjct: 385 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNW 444

Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           TLF P+E+       L D YG+E+E  Y +             R IS   + R +L    
Sbjct: 445 TLFCPNEIMRIKGYCLEDCYGEEWERRYLDCVNDQRISR----RVISIKDIVRLVLRSAV 500

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N                       
Sbjct: 501 ETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTK 560

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           +   E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N 
Sbjct: 561 TRPGEFVVCNLASLSLGRL---PLEDEEQMKEKVATVVRALDNVISLNFYPVPYARITNQ 617

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS +LA+E+G+Y  F
Sbjct: 618 RYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSDLAREKGSYQFF 677

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G                          W E+++ V   GMRN+  +A+APT++
Sbjct: 678 EGSEWQTG--------------AYFDKRGYGSAEWQEVRRTVARQGMRNAYLLAVAPTSS 723

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G +  +DP  +  +++         V                             
Sbjct: 724 TSIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP--------------------------- 756

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++  +Y 
Sbjct: 757 ----ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYL 812

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  G+KT YY+RS+S
Sbjct: 813 LAWKSGVKTLYYVRSKS 829


>gi|34558071|ref|NP_907886.1| ribonucleotide-diphosphate reductase subunit alpha [Wolinella
           succinogenes DSM 1740]
 gi|34483789|emb|CAE10786.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN [Wolinella
           succinogenes]
          Length = 788

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 300/866 (34%), Positives = 438/866 (50%), Gaps = 133/866 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L ++   G +   +  +++     A  GL++VS   +  +      D ++  +++  LI
Sbjct: 1   MLTVIKRSGRVEPLDVTKIQKFTHSAVLGLENVSQSELEVDAKIQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + P +  V AR  L  L  +V                   Y +    +   
Sbjct: 61  KTAVDKIDVDAPEWTYVAARLFLYDLYHKV--------------NRFTGYGKLKDYFERG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R++      FDL +L   +  ERD  F YLG++ LYDRY +       IE+PQ  F
Sbjct: 107 ESEGRIIKGLRGKFDLDFLDTKIVPERDLQFNYLGIKTLYDRYLIKDRSNKPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E E  + AV+FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MSIAMFLAQNEREPNEWAVKFYDLLSRFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF   +E A+L+KY GG+G D++ VRGLG++I G    + GV+PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDGYKEMALLSKYGGGIGWDYSKVRGLGSYIDGHKNAAGGVVPFLKITNDVAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+DL+KN+G++RRR HD+  A WIPDLFMKRV ++  WTL
Sbjct: 287 GTRKGAISVYLEPWHTDIFDFIDLKKNSGEERRRAHDLFPALWIPDLFMKRVEEDGAWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
             P E  DL +L+G+ FE  Y  YE      E  +   I A  LW+K+LT  FE G P++
Sbjct: 347 LDPHECQDLTNLHGEAFEKRYLEYECM----EGIIKETIRAKELWKKVLTSYFEIGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 403 CFKDNANRLNPNAHKGIIRSSNLCTEIFQNTEPNHYLIQVEYEDGSSERFEEHAIITTDT 462

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  AVR
Sbjct: 463 GVEKRANKITSMDSLQGKKVFIAERIAQEGKTAVCNLASINLSKIHTQEDIERVVPIAVR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K++N   RAIGLG+MG    L    I + S E +E  DE ME +
Sbjct: 523 MLDNVIDLNFYPNKKVKRTNLETRAIGLGVMGEAQMLAESKIVWGSQEHLERIDEIMEQV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S+HAI AS  LA+E+G Y  F+GS W +G+FPID     A+   +      +   WD L+
Sbjct: 583 SYHAIKASSTLAKEKGIYPDFEGSNWSKGIFPIDLANSEAKKLVDRGGLFGTDCDWDSLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EQVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              + W+                           + +A+++D   LI++AS RQKWIDQ 
Sbjct: 699 -SLETWN--------------------------FYQSAYDLDQNLLIKAASIRQKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QS N++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S    E++T+            
Sbjct: 732 QSTNIFISLDKASGKYLNDIYVNAWKLGLKSTYYLRSQSP-QAEENTMDRSI-------- 782

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               ECE CQ
Sbjct: 783 --------------------ECEGCQ 788


>gi|283768722|ref|ZP_06341633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia
           extructa W1219]
 gi|283104508|gb|EFC05881.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia
           extructa W1219]
          Length = 836

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 280/912 (30%), Positives = 433/912 (47%), Gaps = 127/912 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG    FD +KI  AI K+F +++           DI +      +  L Q   + 
Sbjct: 6   ITKRNGQQVPFDSTKIQMAIRKSFASLQA----------DISEEDLASILDLLEQKIINR 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD+VE SLM+ G+ ++ ++Y+LYR+ R+  R  ++       I    + ++ 
Sbjct: 56  EKLDVEFIQDKVEQSLMEKGYFEVAKKYILYRQVRTIQRQERNELLELMAIEGLEEHLLS 115

Query: 151 DGTLIS-FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                   + KRL+   E   +G                      + D  + L+ S+  L
Sbjct: 116 LQKTYPNLSLKRLKERYENTITG----------------------QEDRLSLLVRSAAEL 153

Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             KE P + KV  R L  +L  ++          + + ++Q L         +EG+    
Sbjct: 154 TSKEEPTWEKVAGRLLAFQLSLKLKQAEDSLGIHSFYEKLQYL--------TQEGLYGDY 205

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMG 327
           + +     ++    + + +  D+ F Y GL +L +RY +H     I E PQ  ++ +A+ 
Sbjct: 206 ILKGYHQEEIEEAYHFIDFSHDYRFTYAGLDLLANRYLIHSRQHVILESPQEMYLGIALH 265

Query: 328 LALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           LALKE   + +   +FY++L+      +TPTL N+   + QLSSCF+ TVPD L GI+ +
Sbjct: 266 LALKEKKYRMEWVKKFYDMLARHEVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYQS 325

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G     VR  G  I G  G S GVI +++V NDTAVAV+Q G R+G
Sbjct: 326 IANFADVSKFGGGMGMYLGKVRSRGGMIRGFEGASGGVIRWIRVINDTAVAVDQLGVRQG 385

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           AV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K+V +  N  W    P
Sbjct: 386 AVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKKVKEDINQDWYFMDP 445

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            ++       L D YG+E+E  YE   +     +    R +S   + R +L  + ETG P
Sbjct: 446 HDIFVVKGYHLEDSYGEEWERKYEECIQDHRISK----RVMSIKEVVRLILKSIVETGTP 501

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEE 596
           +  ++D  N  +P +H G+++ SNLCTEI  N S                         +
Sbjct: 502 FAFYRDAVNRANPNKHAGIIYCSNLCTEIAQNMSEACIESRTIETRDGETVIVQTQKPGD 561

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L     N   D   L     TAVR LDNVID+N + +  AK +N  +RAI
Sbjct: 562 FVVCNLASLCLGNINVN---DIADLERVTSTAVRALDNVIDLNFYPLVNAKITNQNYRAI 618

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+ G+   L    I + S E ++  D   E I++  I AS ELA+ERG+YS FKGS W
Sbjct: 619 GLGVSGYHHMLAKNRIQWESEEHLQFVDRVFEDIAYMTIRASHELAKERGSYSLFKGSDW 678

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           + G              D   + +     W +L+K ++  GMRN+  MAIAPT++ + + 
Sbjct: 679 ENG--------------DYFRLRKYESERWLKLQKDIQKGGMRNAYVMAIAPTSSTSILI 724

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G +  +DP                V+N F + E K   L                     
Sbjct: 725 GTTAGLDP----------------VLNRFFMEEKKGTMLP---------------RTAPE 753

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           +  +    + +A  ID  + I +   RQ+ IDQ+QS NL++ +E    +L  +   A+  
Sbjct: 754 LSLETYWYYKSAHTIDQNYSIRANGIRQRHIDQSQSFNLWITNEYKMSQLLKLLTLAYDC 813

Query: 896 GLKTTYYLRSRS 907
           G+KT YY RS++
Sbjct: 814 GVKTIYYTRSKA 825


>gi|224437766|ref|ZP_03658713.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
 gi|313144212|ref|ZP_07806405.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
 gi|313129243|gb|EFR46860.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           cinaedi CCUG 18818]
          Length = 792

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 300/820 (36%), Positives = 440/820 (53%), Gaps = 104/820 (12%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + ++  +G +   +  +++     A  GL+ V+   +  +      D ++  +++  L
Sbjct: 3   DTITVVKRNGRIEPLDVSKIQKHTSAAVEGLEGVTQSELEVDAKILFKDKITTEEIQQTL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++   I+ + PN++ V AR  L  L  +V                   Y +    +I+
Sbjct: 63  IKTAVDKIDVDAPNWSFVAARLFLYDLYHKVTGWTG--------------YKKLEDYFIQ 108

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
              + RLL      +DL +L + +K ERD  F YLG++ LYDRY L   N   IE+PQ  
Sbjct: 109 GENEGRLLRGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNQPIELPQHM 168

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +    AV+FY+++S F  +C+TPTL N+ T   QLSSCF+ + PD++
Sbjct: 169 FMAIAMFLAQNENDCNAWAVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTPDNI 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF A +E A+L+KY GG+G D++ VRGLG++I G    + GV+PFLK+AND A+AV+Q
Sbjct: 229 EGIFDAYKEMALLSKYGGGIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIAVDQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH DV EF+DLRKN+G++RRR HD+  A WI DLFMKRV  N  WT
Sbjct: 289 LGTRKGAIATYLEVWHNDVFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANEFWT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P +  +L +LYG+EFE  Y  YE+     E  +  ++ A  LW+K+LT  FE+G P+
Sbjct: 349 LFDPYQCPELTELYGEEFEAKYLEYEQ----NEHILKHRVVAKDLWKKILTNYFESGLPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     V                     
Sbjct: 405 LCFKDNANRANPNGHAGIIRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEVELD 464

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                          +    NL +   +     + +   +  A+
Sbjct: 465 NGVRKAANKITSVDSLLGKKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLPIAI 524

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +   DE ME 
Sbjct: 525 RMLDNVIDLNFYPNRKVKVTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEVMEL 584

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           ISF+AIS+S +LAQE+G Y  F GS W +G+ PID     A    +     + +  W+ L
Sbjct: 585 ISFYAISSSSDLAQEKGKYPQFDGSNWSKGIMPIDLASKEALKLVDRGGLFSQQCDWESL 644

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +K+VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  +++ N+SG   VV   L   
Sbjct: 645 RKKVKTQGIRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVVVPHL--- 701

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                         D    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 702 ----------------------------SADTWNYYISAYDIDQTLLIKAAAVRQKWIDQ 733

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S
Sbjct: 734 GQSTNVFVRLDKASGKMLNDIYMLAWRLGLKSTYYLRSQS 773


>gi|319936386|ref|ZP_08010802.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1]
 gi|319808501|gb|EFW05053.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1]
          Length = 835

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 271/913 (29%), Positives = 436/913 (47%), Gaps = 123/913 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KRNG    +D  KI  AI+KAF  +      +       ++N+      ++ +   
Sbjct: 1   MLIQKRNGLYQDYDRHKIENAIIKAFEGIHETIHQQH------LENILNDVEDQIQER-- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + +E IQD+VE +LM+ G+ ++ + Y+LYRE+   +R           I   ++++
Sbjct: 53  ----ISVEYIQDKVEEALMRHGYLQVAKAYILYREKHHHLR---------IVIEELMQML 99

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207
            D+G        +++    +    L       +L    K  Y +G+++ D    L+ +S 
Sbjct: 100 NDEGIESLL--IKIQKDYPQTEYSL------QLLLVKLKTFYKEGMNQHDAFKMLMKASV 151

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            LI K+ P + K++ARFL   + + +   +      + + ++  L         +E    
Sbjct: 152 ELISKDAPEWEKISARFLTYDIHQRIQEKMETMGIYSFYDKLVYL--------TKENYYG 203

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVA 325
             + E     D+  L + +K ER+  F Y GL+++  RY +       +E PQ  FM +A
Sbjct: 204 DYILEHYSHKDIQELESYMKDERNEVFTYSGLELIMKRYLIQDRNRDILEKPQEMFMGIA 263

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LA+KE EK K A + Y++LS+     +TPT+ N+     Q+SSCF+ TV D L GI+ 
Sbjct: 264 MHLAMKEKEKVKWAKDIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAGIYK 323

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           +L   A ++K+ GG+G  +  VR  G+ I G  G + GVI +LK+ NDTA AV+Q G R+
Sbjct: 324 SLDNFAKVSKHGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLGVRQ 383

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503
           GA   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF K    +    W +  
Sbjct: 384 GAAAVYLDAWHRDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKSDLDASWYMMC 443

Query: 504 PDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           P E+ ++      D YG+E+E  Y          E    R +S   + R ++  L ETG 
Sbjct: 444 PHEIHEVKGYYLEDTYGEEWERKYYECVED----ERISKRVMSVKDIVRLIIKSLVETGT 499

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596
           P+   +D  N  +P  H G+++ SNLC+EI  N SS E                      
Sbjct: 500 PFAFNRDHVNRMNPNAHQGMIYCSNLCSEIAQNMSSMEILPHEQIQIDGETIVVEKTKPG 559

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              VCNL S+ L         +  +L   I   +R LDNVID+N + +  AK +N  +R 
Sbjct: 560 DFVVCNLASLTLGHIDVK---NDKELQHIIYVVMRALDNVIDLNYYPVPYAKITNQKYRP 616

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G+   L  L + + S E +E  D+  E I+++A+ AS  LA+E+G Y  F GS 
Sbjct: 617 VGLGTSGYHHMLVKLGMTFESHEHLEFVDQLYEKINYYALEASCALAKEKGKYDYFDGSD 676

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           +D G                          W  L+  +   G+RN   +A+APT++ + I
Sbjct: 677 FDTG--------------AYFEKRHYQSSSWQVLQNDIHEYGLRNGYLLAVAPTSSTSII 722

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + ++DP  +  +++       T V      +L  +  W                   
Sbjct: 723 AGTTAAVDPIMKKFFMEEKKGSMMTRVAP----DLNMKTFW------------------- 759

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A  ID  W+IE+A  RQ+ IDQ+QS+NLY+ +E + +KL  +Y +AW 
Sbjct: 760 --------LYKNAHHIDQQWVIEAAGIRQRHIDQSQSVNLYITNEFTFRKLLDLYIKAWE 811

Query: 895 MGLKTTYYLRSRS 907
            G+KT YY+RS+S
Sbjct: 812 KGVKTLYYVRSQS 824


>gi|32267273|ref|NP_861305.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           hepaticus ATCC 51449]
 gi|32263326|gb|AAP78371.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
           51449]
          Length = 791

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 298/826 (36%), Positives = 439/826 (53%), Gaps = 104/826 (12%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + +   +G +   +  +++     A  GL+ VS   +  +      D ++  +++  L
Sbjct: 3   DTITVTKRNGRIEPLDIAKIQKHTYAAVEGLEGVSQSELEVDAKILFKDKITTEEIQQTL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++   I+   PN++ V AR  L  L  +V                   Y +    + +
Sbjct: 63  IKTAVDKIDVNTPNWSFVAARLFLYDLYHKVTGWTG--------------YKKLEEYFEQ 108

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
              + +L+      +DL +L + +K ERD  F YLG++ LYDRY L   N   IE+PQ  
Sbjct: 109 GEREGKLISGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNRPIELPQHM 168

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +    AV+FYN++S F  +C+TPTL N+ T   QLSSCF+ + PD++
Sbjct: 169 FMAIAMFLAQNEKDCNAWAVKFYNMISLFEVICATPTLANARTTRHQLSSCFVGSTPDNI 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF A +E A+L+KY GG+G D++ VRGLG+ I G    + GV+PFLK+AND A+AV+Q
Sbjct: 229 EGIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKIANDVAIAVDQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH D+ +F+DLRKN+G++RRRTHD+  A WI DLFMKRV  N  WT
Sbjct: 289 LGTRKGAIATYLEIWHNDIHDFIDLRKNSGEERRRTHDLFPAIWICDLFMKRVESNEFWT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  +L +LYG+ FE  Y  YE+     +  +  +I A  LW+K+LT  FE+G P+
Sbjct: 349 LFDPYECPELTELYGEAFEAKYIEYEQ----SDKVLKSRILAKDLWKKILTNYFESGLPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601
           + FKD  N  +P  H G++ SSNLCTEI  N++     V                     
Sbjct: 405 LCFKDNANRVNPNAHAGIIRSSNLCTEIFQNTNPNHYVVEVEFEDGSKVVYEEKEEVKLD 464

Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +  A+
Sbjct: 465 NGMCKRANKITSVDSINGRKVFITSRIAQGGATAVCNLASVNLSKINTKEDIERVLPIAI 524

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L   HI + S E +   DE ME 
Sbjct: 525 RMLDNVIDLNFYPNRKVKVTNMQNRAIGLGVMGEAEMLARSHIDWGSEEHLIKIDEIMEL 584

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +SF+AI +S  LAQE+G Y  F+GS W +G+FPID     A    +     + +  W+ L
Sbjct: 585 VSFYAIESSANLAQEKGKYPQFEGSNWSKGIFPIDMANKEALKIVDRGGLFSQQCDWESL 644

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + +VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 645 RAKVKTQGMRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWYEENLSGLIPVVVPHL--- 701

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               D W+                           + +A++I+   +I++A+ RQKWIDQ
Sbjct: 702 --NLDTWN--------------------------YYVSAYDIEQTHIIKAAAVRQKWIDQ 733

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            QS N++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S  + E+
Sbjct: 734 GQSTNIFVRLDKASGKMLNDIYTLAWKLGLKSTYYLRSQSPEAEEQ 779


>gi|320038060|gb|EFW19996.1| ribonucleoside-diphosphate reductase large subunit [Coccidioides
           posadasii str. Silveira]
          Length = 643

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/668 (35%), Positives = 363/668 (54%), Gaps = 30/668 (4%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           + V +  +  +    +Y G++  +L+     ++  +    P+YA + AR  +  L ++  
Sbjct: 2   EHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARIAVSNLHKQTK 61

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
                         +  LY     +              ++      L + + Y+RDF +
Sbjct: 62  KQFSSV--------IDDLYHYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYDRDFNY 113

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +Y G + L   Y L ING   E PQ   MRVA+G+  ++ EK   A+E YNL+S   F  
Sbjct: 114 QYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK---AIETYNLMSQKFFTH 170

Query: 354 STPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++PTLFN+GT  PQ++SCFL  +  D + GI+  L+  A+++K +GG+G +   +R  G+
Sbjct: 171 ASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGGIGLNVHRIRATGS 230

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G+IP L+V N+TA  V+QG  KR GA   YLE WH D+ EFLDLRKN G 
Sbjct: 231 YIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHSDIFEFLDLRKNHGK 290

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A W PDLFMKRV +N  WTLF P+E   L D+YG EFE  YE YE+    
Sbjct: 291 EEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGDEFEALYEQYEK---- 346

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E +  + I A  LW  +L    ETG+P++ +KD CN +S Q+++G + SSNLCTEI   
Sbjct: 347 -EGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEY 405

Query: 592 SSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           +S +E AVCNL S+ L  +    +  +D+ KL    +  VR L+ +ID N + + +A+KS
Sbjct: 406 TSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNKIIDGNHYPVPEARKS 465

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  HR I +G+ G   A   L +P+ SPEA ++  +  E I   A++AS ++A+  G Y 
Sbjct: 466 NFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKVDGPYE 525

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +++GS   QGV   D   +            T    WD LK+ +   G+RNS  +A  PT
Sbjct: 526 TYEGSPVSQGVLQYDMWNVTP----------TDLWDWDSLKRDIAKHGVRNSLLVAPMPT 575

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           A+ + I G ++  +P   N+Y +  ++G+F VVN +L+ +L    LW + M + +    G
Sbjct: 576 ASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGG 635

Query: 830 SIGNIERI 837
           SI +I  I
Sbjct: 636 SIQSIPNI 643


>gi|325859752|ref|ZP_08172882.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola CRIS 18C-A]
 gi|325482678|gb|EGC85681.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola CRIS 18C-A]
          Length = 840

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/917 (28%), Positives = 435/917 (47%), Gaps = 126/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   +++ +KIS AI K+F++             + I  +  +   + +  N 
Sbjct: 1   MEITKRNGEKEAYNNNKISTAIKKSFISTGKNVP------DNEIAGMVSKV-EQFITDNP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                 +EDIQ++VE  LM+ GH++  + Y+L+R +R++ R A ++      D  +A  L
Sbjct: 54  ELRT--VEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINYIAWAVDDRQLADVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  +    +++   L+                            G+S  D   ALI +
Sbjct: 112 HRVAHEYRERAYSMVTLQEKFASFSK-------------------PGMSHRDAIDALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  ++AR L  +  +++     +   K  + +             EEG+
Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEQKISRLEDELGLKTFYRK--------VKYMTEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + ++  + ++   A+ ++ ER+    Y GL +L  RY +   +G  IE  Q  F+ 
Sbjct: 205 YGDYILQNYSEEEINEAASFIRPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLG 264

Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +A+ LA+ E    +       Y+LLS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 265 IALHLAMPEKKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLD 324

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 325 GIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 384

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W
Sbjct: 385 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNW 444

Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           TLF P+E+       L D YG+E+E  Y +             R IS   + R +L    
Sbjct: 445 TLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR----RVISIKDIVRLVLRSAV 500

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N                       
Sbjct: 501 ETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTK 560

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           +   E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N 
Sbjct: 561 TRPGEFVVCNLASLSLGRL---PLEDEEQMKEKVATVVRALDNVISLNFYPVPYARITNQ 617

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS +LA+E+G+Y  F
Sbjct: 618 RYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFEIINRAAILASSDLAKEKGSYQFF 677

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G                          W ++++ V   GMRN+  +A+APT++
Sbjct: 678 EGSDWQTG--------------AYFDKRGYDNAEWKDVRRTVARQGMRNAYLLAVAPTSS 723

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G +  +DP  +  +++         V                             
Sbjct: 724 TSIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP--------------------------- 756

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++  +Y 
Sbjct: 757 ----ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYL 812

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  G+KT YY+RS+S
Sbjct: 813 LAWKNGVKTLYYVRSKS 829


>gi|257461040|ref|ZP_05626138.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           gracilis RM3268]
 gi|257441414|gb|EEV16559.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           gracilis RM3268]
          Length = 790

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 299/866 (34%), Positives = 431/866 (49%), Gaps = 132/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA  GL++VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKYTSEAVEGLENVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V         +                     
Sbjct: 61  TAVEKIDVDRPNWTFVAARLFLYDLYHKVTGFSGYNSLEDYFA--------------RGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322
              R++      +DL  L + L+ +RD  F YLG++ LYDRY +    G+ IE+PQ  FM
Sbjct: 107 AAGRIMLGLKEKYDLEDLNSYLQPQRDLQFNYLGIKTLYDRYLIKDKSGAPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNELDCQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKR+     WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHEIFPALWINDLFMKRLQSGGKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P EVSDL DLYG EFE  YE YE      +      I A  LW+K+LT  FETG P++ 
Sbjct: 347 DPAEVSDLSDLYGAEFEARYEQYEADDKISKS----TILAKELWKKILTSYFETGMPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  H G++ SSNLCTEI  N++     +                       
Sbjct: 403 FKDNANRINPNAHQGLIRSSNLCTEIFQNTAPNHYKIKVVFADGSERLFEENEDVRTDAG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     +++A  +  AVR+
Sbjct: 463 IVKKAKKITALDTLGGKEIFIVEKGCSEGATAVCNLASVNLSKINSREEIARVMPIAVRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    + + S E  E+ D  ME +S
Sbjct: 523 LDNVIDLNFYPHAKVKHTNLKTRAIGLGVMGEAQMLAERGVKWGSYEHFELIDRIMENVS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELK 750
           F+AI AS  LA E+G Y  F GS W +G+FPID     A+   +   +   S   WD L+
Sbjct: 583 FNAIKASSNLAVEKGRYPDFAGSKWSEGIFPIDLANENAKALVKRGGLFEQSSCDWDGLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +     + +  A+E+D   L+++ + RQKWIDQ 
Sbjct: 695 -----------------------VPNLSPKTWQAYVPAYELDQRLLVKAGAIRQKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN+++   + SG  L  IY  AW +GLK+TYYLRS S              KLN V  
Sbjct: 732 QSLNIFMSLDKASGGYLSEIYTLAWQLGLKSTYYLRSES----------PDSEKLNNVAD 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               ECE CQ
Sbjct: 782 RSI-----------------ECEGCQ 790


>gi|313683663|ref|YP_004061401.1| ribonucleoside-diphosphate reductase class ia alpha subunit
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156523|gb|ADR35201.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfuricurvum kujiense DSM 16994]
          Length = 788

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 284/866 (32%), Positives = 431/866 (49%), Gaps = 133/866 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L I+  +G     +  +++     A  GL +VS   +  +      DG+  ++++  LI
Sbjct: 1   MLTIVKRNGRREPLDITKIQKYTSAAVKGLSNVSQSELEVDAQIQFRDGIHSNEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V +R  L  L   V                   Y      +   
Sbjct: 61  KTAVDKIDIDSPNWTFVASRLFLYDLYHRVNGFTG--------------YGSLQSYFERG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
             + R+L      ++L  L   +  ERD  F YLG++ LYDRY +    G  IE+PQ  F
Sbjct: 107 EGEGRILLGLKEKYNLADLDAYIVPERDLEFNYLGVKTLYDRYLIKDRKGDPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M VAM LA  E++++  A +FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAVAMFLAQNESDRQGWAKKFYDMMSKFEVMMATPTLSNARTTRHQLSSCYIGSSPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF A +E A+L+K+ GG+G DWT VR +G+ I G    + G +PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDAYKEMALLSKFGGGIGWDWTQVRAMGSFIDGHKNAAGGTVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH+DV++FLD++KN+G++RRR HD+  A WI D+FMKRV ++  WT+
Sbjct: 287 GTRKGAIAVYLEPWHMDVKDFLDVKKNSGEERRRAHDLFPALWINDMFMKRVVEDGIWTM 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +V +L +LYG  FE  Y   E+     +        A  LW+K+LT  FETG P++
Sbjct: 347 FDPFDVKELSELYGDAFEKRYLELEQDPSIPKEHS----KAKDLWKKILTSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 403 CFKDSANRSNPNDHFGIIRSSNLCTEIFQNTQPNHYLIKIKFEDGSFVTYEEDEIVKVDS 462

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  A+R
Sbjct: 463 GIEKPANKITALDSLGGRPIYIVEKEKVDGATAVCNLASVNLSRVHTKEDIDRIVPVAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID+N + +EK K++N   RAIGLG+MG    L    I + S E  +  DE ME +
Sbjct: 523 ALDNVIDLNFYPLEKVKRTNMRSRAIGLGVMGEAQMLAENRIVWGSQEHFDKVDEVMEAV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI AS +LA E+G+Y+ ++GS W +G+ P+D      +   +          WDEL+
Sbjct: 583 SYNAIKASSDLAVEKGSYAEYQGSKWSRGILPMDHATAEVQNLVDRGGLFAPNYEWDELR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + +K  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 ETIKRQGMRNGYLMAIAPTSSISILTGTTQTIEPIYKRKWFEENLSGLIPVVAP------ 696

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                    ++  D    +  A+++D   L+++A+ RQKWIDQ 
Sbjct: 697 -------------------------KLSPDTWSYYTPAYDLDQTILVKAAAIRQKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN+++   + SGK L+ IY  AW +GLK+TYYLRS+S    ++ T             
Sbjct: 732 QSLNIFITLDKASGKYLNDIYMLAWKLGLKSTYYLRSQSPEQ-KQDTADRSM-------- 782

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               ECE CQ
Sbjct: 783 --------------------ECEGCQ 788


>gi|319955827|ref|YP_004167090.1| ribonucleoside-diphosphate reductase class ia alpha subunit
           [Nitratifractor salsuginis DSM 16511]
 gi|319418231|gb|ADV45341.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Nitratifractor salsuginis DSM 16511]
          Length = 791

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 294/819 (35%), Positives = 431/819 (52%), Gaps = 104/819 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K++  +G +   +  +++     A  GL  VS   +  +      D +S  +++  LI
Sbjct: 1   MIKVVKRNGRVEPLDVSKIQKYTSAAVEGLDGVSQSELEVDAKLQFRDMISTEEIQLTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  +  +V                   Y      +   
Sbjct: 61  KTAVDKIDIDQPNWTFVAARLFLYDIYHKVSGFTG--------------YIHLRDYFDRG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
             + R+L      +DL  L + +K ERD  F YLG++ LYDRY L    G  IE+PQ  F
Sbjct: 107 EKEGRILLGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRQGQPIELPQHLF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M VAM LA  E + +  A +FY++LS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTTRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF   +E A+L+K+ GG+G DWT VRG+G++I G    + G++PFLK+AND A+AV+Q 
Sbjct: 227 GIFDGYKEMALLSKFGGGIGWDWTQVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WHIDV +FLDL+KN+G++RRR HD+  A WI DLFMKRV ++  WTL
Sbjct: 287 GTRKGAIAVYIEPWHIDVRDFLDLKKNSGEERRRAHDLFPALWINDLFMKRVQEDGIWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P EV +L DLYG+EFE  Y   E+     E      +SA  LW+++L   FETG+P++
Sbjct: 347 FDPYEVKELTDLYGEEFEKRYLELEQD----ESITKEVVSAKQLWKEVLRSYFETGNPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P +H GV+ SSNLCTEI  N+S     +                      
Sbjct: 403 CFKDAANRANPNRHAGVIRSSNLCTEIFQNTSPNHYRMKIIFEDQSVTYFEEEEMVTVDS 462

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +A  + TA+R
Sbjct: 463 GVTKPAKKITALDTLDGKKIWMVEKDPVDGETAVCNLASVNLSKINTPEDIARVVPTAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + + K KK+N   R+IGLG+MG    L    I + S E     DE ME +
Sbjct: 523 MLDNVIDLNFYPLGKVKKTNEKSRSIGLGVMGEAQMLAEAGIEWGSSEHFHKIDEVMESV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI AS +LA E+G Y +F+GS W +G+FPID     A    +          W+ L+
Sbjct: 583 SYYAIKASSDLALEKGCYPNFEGSDWSKGIFPIDKANPEACKLVDRGGLFGYTHDWEALR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKNDGMRNGYLMAIAPTSSISILTGTTQAIEPVYKRKWYEENLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D    +   +E+D   L+ + + RQKWIDQ 
Sbjct: 695 -----------------------VPNLNPDTWAYYTPCYELDQRLLVRAGAIRQKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QSLN++  LD+ SG+ L+ IY +AW  GLK+TYYLRS+S
Sbjct: 732 QSLNIFIRLDKASGRYLNDIYMEAWKFGLKSTYYLRSQS 770



 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 20/80 (25%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KRNG V   D SKI +    A  AVEG            +     +   +L     
Sbjct: 2   IKVVKRNGRVEPLDVSKIQK-YTSA--AVEGLDG---------VSQSELEVDAKLQFR-- 47

Query: 89  SALIVHIEDIQDQVECSLMQ 108
              ++  E+IQ     +L++
Sbjct: 48  --DMISTEEIQ----LTLIK 61


>gi|327312836|ref|YP_004328273.1| ribonucleoside-diphosphate reductase subunit alpha [Prevotella
           denticola F0289]
 gi|326945781|gb|AEA21666.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           denticola F0289]
          Length = 840

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 265/917 (28%), Positives = 435/917 (47%), Gaps = 126/917 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG   ++D +KIS AI K+F++             + I  +  +   + +  N 
Sbjct: 1   MEITKRNGEKEAYDNNKISTAIKKSFISTGKNVP------DNEIAGMVSKV-EQFITDNP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145
                 +EDIQ++VE  LM+ GH++  + Y+L+R +R++ R A ++      D  +A  L
Sbjct: 54  ELRT--VEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINYIAWAVDDRQLADVL 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +  +    +++   L+                            G+S  D   ALI +
Sbjct: 112 HRVAHEYRERAYSMVTLQEKFASFSK-------------------PGMSHRDAIDALIKA 152

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   E P +  ++AR L  +  +++     +   K  + +             EEG+
Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEQKISRLEDELGLKTFYRK--------VKYMTEEGL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               + ++  + ++   A+ ++ ER+    Y GL +L  RY +   +G  IE  Q  F+ 
Sbjct: 205 YGDYILQNYSEEEINEAASFIRPERNELLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLG 264

Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +A+ LA+ E    +       Y+LLS      +TPTL N+   + QLSSCF+ TVPD L 
Sbjct: 265 IALHLAMPEKKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLD 324

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q 
Sbjct: 325 GIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 384

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499
           G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W
Sbjct: 385 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNW 444

Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           TLF P+E+       L D YG+E+E  Y +             R IS   +   +L    
Sbjct: 445 TLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR----RVISIKDIVHLVLRSAV 500

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591
           ETG P+   +D  N  +P  H G+++ SNLCTEI  N                       
Sbjct: 501 ETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTK 560

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           +   E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N 
Sbjct: 561 TRPGEFVVCNLASLSLGRL---PLEDEEQMKEKVATVVRALDNVISLNFYPVPYARITNQ 617

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R+IGLG+ G+  AL   HI + S E ++  D+  E I+  AI AS +LA+E+G+Y  F
Sbjct: 618 RYRSIGLGVSGYHHALAKRHIKWESEEHLQFMDKVFETINRAAILASSDLAKEKGSYQFF 677

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +GS W  G                          W ++++ V   GMRN+  +A+APT++
Sbjct: 678 EGSDWQTG--------------AYFDKRGYDNAEWKDVRRTVARQGMRNAYLLAVAPTSS 723

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G +  +DP  +  +++         V                             
Sbjct: 724 TSIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP--------------------------- 756

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                + D+   ++ +A+ I+  W + ++  RQ+ IDQAQS+NLY+ ++ + +++  +Y 
Sbjct: 757 ----ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYL 812

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  G+KT YY+RS+S
Sbjct: 813 LAWKNGVKTLYYVRSKS 829


>gi|196229991|ref|ZP_03128855.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
           flavus Ellin428]
 gi|196226317|gb|EDY20823.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter
           flavus Ellin428]
          Length = 791

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 341/779 (43%), Positives = 475/779 (60%), Gaps = 57/779 (7%)

Query: 30  QVIKRN------G--GVTSFDPSKISRAIMKA-FMAVEGKGASRSIRVQDIIKNLTEQTV 80
           QVI+R+      G   V  +   KI++A+  A F  VEG+     ++VQ  I+       
Sbjct: 24  QVIRRDLPGDTSGKPRVVPWLGHKIAKAVSAACF--VEGQDDQIGVQVQAEIEY------ 75

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            RL +   S   VHIE +QD VE +L+  GH K+   Y  YR  R+  R           
Sbjct: 76  -RLRRERPS--FVHIEQLQDMVEETLIDLGHAKVALVYGKYRARRAAERE---------- 122

Query: 141 IAPKLKIMMDDGTLISF----NSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSE 195
                 ++ DDG  +          +   +  A  GL+  ++   +L+   ++    L+ 
Sbjct: 123 -HGIGPVIEDDGQQLELATREQLGDIRARISFAKIGLKVTLNDDDLLARLLRSTSISLTP 181

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +    ++ ++++L++ + +     AR LL  +  E L        +A    ++  + + 
Sbjct: 182 VERRDTIVLNAKSLLDVDADARFFAARILLSYIYEETLPWKVADGPQA----LKEAHRKA 237

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING---- 311
           F  YI  G+    L   + +FDL  LA  L    D  F++LG+Q LYDRY +H +     
Sbjct: 238 FLEYIPRGIALGRLEPRLAEFDLKKLATALDPFADLQFDFLGIQTLYDRYLIHTHDSVTG 297

Query: 312 --SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              R+E PQ F+MRVAMGL+++E E+E+RA +FY +  S     STPTLFN+GT HPQLS
Sbjct: 298 RKQRMEAPQVFWMRVAMGLSVQEPEREERAGQFYGIYKSRRACSSTPTLFNAGTMHPQLS 357

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L    D +  I    +  + L+K++GGLG  WT +RG GAHIHGTNG+S GVIPFLK
Sbjct: 358 SCYLLYCGDSIEEITETWRRFSHLSKWAGGLGCSWTAIRGAGAHIHGTNGESSGVIPFLK 417

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V+ND A+AVNQGGKR GA+C+YLE WH D+E+FLDLRK TGDDRRRTH+MNTA+WIPDLF
Sbjct: 418 VSNDIAIAVNQGGKRPGALCSYLELWHADIEDFLDLRKETGDDRRRTHNMNTAHWIPDLF 477

Query: 490 MKRVTQNAG--------WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           MKR+   +         W+LF   E  DL +L G+ FE  Y  YE  A  G++   RK+ 
Sbjct: 478 MKRLKAISDGTLTKEATWSLFRTSETPDLPELSGRAFEERYLQYEALAAEGKLW-SRKVR 536

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
            +ALW++ML MLFETGHPW+TFKDPCN+RSPQ H GV+H+SNLCTEITLN+SS+E AVCN
Sbjct: 537 VLALWKRMLEMLFETGHPWMTFKDPCNLRSPQDHTGVIHNSNLCTEITLNTSSDEVAVCN 596

Query: 602 LGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L SINL AH   +   D+D+L +TI   +R+LDNVIDIN + ++ A  +N  HR +GLGL
Sbjct: 597 LASINLAAHLREDGALDHDRLRATITVLMRMLDNVIDINFYPVDAAANANLRHRPVGLGL 656

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG Q AL+   I + +PEAV   DE++E I+++A  AS +LA ERG Y ++ GS WD+G+
Sbjct: 657 MGLQDALYDKGIAFDTPEAVAFNDEALEAIAYYAYEASSDLAAERGRYQTYAGSKWDRGL 716

Query: 721 FPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            P+D++  L + R   L ++RTSRL W  L++++   GMRNSNC+AIAPTATI+NI G 
Sbjct: 717 MPLDTLAHLEQQRGVPLMVDRTSRLDWTALRQKIAQQGMRNSNCLAIAPTATISNILGA 775


>gi|152989805|ref|YP_001355527.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratiruptor
           sp. SB155-2]
 gi|151421666|dbj|BAF69170.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitratiruptor
           sp. SB155-2]
          Length = 789

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 285/828 (34%), Positives = 440/828 (53%), Gaps = 111/828 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++++  +G +   +  +++   + AC GL+ VS   +  +      DG++  +++  LI
Sbjct: 1   MIRVVKRNGRVEPLDITKIQKYTKAACEGLEGVSQSELEVDAKIQFRDGITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V AR  L  L  +V                   Y      + + 
Sbjct: 61  RTAVDKIDVDRPNWSFVAARLFLYDLYHKVSGFTG--------------YRHLREYFEKG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
             + R++      +DL  L + +K ERD  F YLG++ LYDRY L   N + IE+PQ  F
Sbjct: 107 EKEGRIIPGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRNNNPIELPQQLF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M VAM LA  E + +  A  FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAVAMFLAQNELDCQSWAKRFYDVISKFEVMVATPTLSNARTTRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G DW+ VR +G++I G    + G++PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDWSRVRAMGSYIDGHKHAAGGIVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+++F+DL+KN+G++RRR HD+  A WI DLFMKRV ++  WTL
Sbjct: 287 GTRKGAIAVYIEPWHMDIKDFIDLKKNSGEERRRAHDLFPALWINDLFMKRVAEDGIWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E SDL +++G+EFE  Y  YE++ D     +  ++ A  LW+ +L   FETG P++
Sbjct: 347 FDPYETSDLTEVWGEEFEKRYLEYEQRDDI----LKEQVRAKELWKLILRSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 403 CFKDNANKCNPNDHAGIIRSSNLCTEIFQNTEPNYYKIKIKYEDGSVEYYDEEEEIRIDT 462

Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  A+R
Sbjct: 463 GIVKKAKKISSIDSINGKKVFIVEKEKVDGLTAVCNLASVNLSKVHTKEDIERVVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + +EK KK+N   R+IGLG+MG    L    I + S E  +  DE ME I
Sbjct: 523 MLDNVIDLNFYPLEKVKKTNLQTRSIGLGVMGEAQMLAEHKIEWGSDEHFKKIDEIMEMI 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPW 746
           S++AI +S  LA E+G Y  F+ S W +G+ PID+    A+     R  L         W
Sbjct: 583 SYNAIRSSSNLAVEKGVYPLFENSKWAKGILPIDTANKEAKKLTPDRGGLF---GYIYDW 639

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           +EL+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV    
Sbjct: 640 NELREKVKRDGMRNGYLMAIAPTSSISILTGTTQTIEPVYKRKWFEENLSGLIPVV---- 695

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  D  + +  A+++D   LI++A+ RQKW
Sbjct: 696 ---------------------------VPNLSPDTWQYYTPAYDLDQRLLIKAAAVRQKW 728

Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           IDQ QS+N++  LD+ SG+ L  IY  AW +GLK+TYYLRS+S    +
Sbjct: 729 IDQGQSVNIFIRLDKASGRYLHEIYTLAWKLGLKSTYYLRSQSPEVAQ 776


>gi|299144103|ref|ZP_07037183.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518588|gb|EFI42327.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 843

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 272/920 (29%), Positives = 437/920 (47%), Gaps = 116/920 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G +  FD +KI +AI+KA+ +++ +        +++I  +       LL    S
Sbjct: 3   NIKKRDGRLVEFDRNKIEKAILKAYKSLDRE------PDENVINEMACSVENLLLNKFPS 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E+IQD VE +L+++  +++ + Y+LYR + +  R               + I+ 
Sbjct: 57  NHIATVEEIQDLVEITLIENRQYEVVKSYILYRAQHTMNRKIIEKFSEYITDNNVIDIIR 116

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
           D    I  +  R                 + +  +    +   +++     A+I ++  L
Sbjct: 117 D----IQNDFDR------------THYDIEQLFLKWNSFLKKDMTQRQYLLAIIKAAAEL 160

Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             KE PN+  ++ARF++      +     K+  K  + +++ L         +EG+    
Sbjct: 161 TSKESPNWEYISARFMVYDNNSSIKQNSEKRGIKNFYDKIKTL--------TDEGLYGDY 212

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMG 327
           + +   + D+  L   +   RD  F Y GL ++  RY +    G+ +E  Q  FM ++M 
Sbjct: 213 ILKEYTEEDINELEVYMDSSRDKLFNYSGLDLIVKRYLIRDSEGNVLENIQEMFMGISMH 272

Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
           LA+ E   K   A + Y++LS+     +TPT+ N+   + QLSSCF+  VPD L GI+  
Sbjct: 273 LAIPEGNNKVSFAKKLYDILSTLKITVATPTMSNARKPYHQLSSCFIDIVPDSLTGIYRT 332

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GV+ ++++ NDTAVAV+Q G R+G
Sbjct: 333 IDNFAQVSKHGGGMGIYFGKVRSQGSDIRGFKGVAGGVVRWIRLTNDTAVAVDQLGVRQG 392

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR++ HD+  A   PDLF +    N    W LF P
Sbjct: 393 SVAVYLDVWHKDMPEFLQLRTNNGDDRQKAHDVFPAVSYPDLFWRLAKNNIEATWYLFDP 452

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+       L D YG E+E  Y               R IS   + R ++  L ETG P
Sbjct: 453 HEIEQIMGYKLEDYYGDEWEKRYYECVNNNKLSR----RTISVKDMIRLIIVSLTETGTP 508

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +   +D  N  +P +HVG+++SSNLCTEI  N  + E                       
Sbjct: 509 FTFNRDAANKANPNKHVGMIYSSNLCTEIMQNMKAIETMDTRIEEINKDSYITKVTKAGD 568

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L      N  D  +L + +   VR LDNVID+N + +  A+ +N  +RAI
Sbjct: 569 FVVCNLASLVLGNI---NLEDEKELENIVSITVRALDNVIDLNYYPVPYAEITNQKYRAI 625

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG  G+  AL    I ++S E +E  D+  E I++ AI AS E+A+E+GAY  F GS W
Sbjct: 626 GLGTSGYHHALVQRGIMFSSEEHLEFMDKIYENINYFAIKASSEIAKEKGAYKYFNGSEW 685

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           + G              +       S   W +L++ V+  G+RN+  MAIAPT + + I 
Sbjct: 686 ESG--------------EYFRRRDYSSNRWKDLQESVRVNGLRNAYLMAIAPTGSTSIIA 731

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S  +DP  +  +++         V       L  +  W+                   
Sbjct: 732 GTSAGVDPVMKRYFLEEKKGSIIPRVAPG----LNAKTFWN------------------- 768

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
                   +  A E+D  W+I +AS RQ+ IDQ QS+NLY+  + + +K+  +   A  M
Sbjct: 769 --------YENAHEVDQDWIIRAASIRQRHIDQGQSVNLYITTDYTMRKILNLLISANEM 820

Query: 896 GLKTTYYLRSRSATSVEKST 915
           G+K+ YY+R +S    E  T
Sbjct: 821 GIKSIYYVRGKSLEVEECDT 840


>gi|260591986|ref|ZP_05857444.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           veroralis F0319]
 gi|260536270|gb|EEX18887.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella
           veroralis F0319]
          Length = 840

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/915 (28%), Positives = 435/915 (47%), Gaps = 122/915 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKRNG    ++ +KI+ AI K+F++         I+ ++I   + E  V +++  N 
Sbjct: 1   MDIIKRNGESERYNNNKIAIAIKKSFISTGK-----PIKDEEIAAMVAE--VEQIIIDNP 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E+IQ+QVE  LM  GH+   + ++L+R +R++ R A +     A       ++
Sbjct: 54  DQRT--VEEIQNQVEKHLMMHGHYDEAKNFILFRYQRNEQRKAINDIARMADDTELTTVL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207
            D                  A    + V S + L E + N+    +S  +    LI ++ 
Sbjct: 112 QD-----------------VAREYRERVYSMVTLQEKFANLCKPSMSHKEAIDTLIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L   E P +  ++AR L  +  +++     +      +++++ +  E            
Sbjct: 155 ELTTPEAPAWEMISARILSYRAEQKIKKQEDEIGIDGFYNKLKYMTSEGL--------YG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
             + ++  + ++   A  +K ER+    Y GL +L  RY +    G  IE  Q  ++ +A
Sbjct: 207 EYILQNYTEEEINEAATFIKEERNKLLNYSGLDLLLKRYVIKNYAGKAIERVQEMYLGIA 266

Query: 326 MGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           + LA+ E    +       Y++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 267 LHLAMPEQKENRLMWVHRIYDMLSKLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLDGI 326

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + +L   + ++K+ GG+G  +  VR  G +I G  G + GVI ++++ NDTAVAV+Q G 
Sbjct: 327 YRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLGM 386

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +N    W L
Sbjct: 387 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMADENLDQNWYL 446

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           F P+E+       L D YG+E+E  Y +             R IS   + R +L    ET
Sbjct: 447 FCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLTR----RVISIKDIIRLVLRSAVET 502

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593
           G P+   +D  N  +P  H G+++ SNLCTEI  N                       + 
Sbjct: 503 GTPFTFNRDTVNRANPNHHKGMIYCSNLCTEIAQNMAPIETVSKTIETKDGETIVVTTTK 562

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             E  VCNL S++L         D +++   + T VR LDNVI +N + +  A+ +N  +
Sbjct: 563 PGEFVVCNLASLSLGRL---PLEDEEQMREKVATIVRALDNVISLNFYPVPYAEITNQKY 619

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG+ G+  AL    I + S E ++  D+  E I+  AI AS  LA+E+G+Y  F+G
Sbjct: 620 RSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRSAILASSNLAKEKGSYQYFEG 679

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G+                         W E++K V   GMRN+  +A+APT++ +
Sbjct: 680 SDWQTGL--------------YFDKRGYDSDEWKEVRKTVALQGMRNAYLLAVAPTSSTS 725

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP  +  +++         V                               
Sbjct: 726 IIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP----------------------------- 756

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
              + D+   ++ +A+ I+  W I+++  RQ+ IDQAQS+NLY+ ++ + +++  +Y  A
Sbjct: 757 --ELSDETYWMYKSAYLINQKWSIKASGVRQRHIDQAQSMNLYITNDFTMRQVLDLYLLA 814

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY+RS+S
Sbjct: 815 WKSGVKTIYYVRSKS 829


>gi|154174561|ref|YP_001407352.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           curvus 525.92]
 gi|112802438|gb|EAT99782.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           curvus 525.92]
          Length = 790

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 295/867 (34%), Positives = 437/867 (50%), Gaps = 134/867 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++     A +GL++V+   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTTAAVAGLENVNLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+++G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDLYHKVTGFNG---------------YNHLREYLQKG 105

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
            KA  +   + + +DL  L   ++ ERD  F YLG++ LYDRY +   NG+ IE+PQ  F
Sbjct: 106 EKAGRIIAGLKEKYDLDDLNAYIRPERDLQFAYLGIKTLYDRYLIKDKNGAPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +N  W+L
Sbjct: 286 GTRKGAIAVYIEPWHMDVADFLDLRKNSGEERRRAHELFPALWINDLFMKRVRENGRWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +VSDL DLYG+ FE  YE YE +    E      + A  LW+K+LT  FETG P++
Sbjct: 346 FDPAQVSDLCDLYGENFERRYEQYENE----ENIQKNVVLAKELWKKILTSYFETGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N++     +                      
Sbjct: 402 CFKDNANKANPNDHEGIIRSSNLCTEIFQNTAPNYYKIKITFDDGGERLFDEEEDVTIDS 461

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +       +   +  AVR
Sbjct: 462 GITKKAKKLSALDSLGGRQIFIVEKESVEGKTAVCNLASVNLSKVNKKADIERVVPIAVR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L    + +   E   + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGGYEHFALIDSIMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDEL 749
           S+ AI  S  LA E+G Y +F+GS W +GV PID+    A+   +   +       W++L
Sbjct: 582 SYQAIYTSSNLAVEKGKYPTFEGSKWSRGVMPIDTANENAKALLNHGGLFDEDTCDWEKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + +VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V       
Sbjct: 642 RAKVKTDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV------- 694

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  D  + +  A+E+D   L+ +A+ RQKWIDQ
Sbjct: 695 ------------------------VPNLSPDTWQFYTPAYELDQRVLVRAAAVRQKWIDQ 730

Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            QSLN+++   + SG  L  IY  AW +GLK+TYYLRS S              K+N V 
Sbjct: 731 GQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES----------PDSEKVNNVA 780

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                ECE CQ
Sbjct: 781 DRSI-----------------ECEGCQ 790



 Score = 38.7 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEG-----KGASRSIRVQDIIKNLTEQTVTRL 83
          ++VIKRNG     D SKI +    A   +E            I+ +D+I   TE+    L
Sbjct: 1  MKVIKRNGRTEELDISKIKKYTTAAVAGLENVNLSELEVDAKIQFRDMIT--TEEIQQTL 58

Query: 84 LQ 85
          ++
Sbjct: 59 IK 60


>gi|224372454|ref|YP_002606826.1| ribonucleotide-diphosphate reductase subunit alpha [Nautilia
           profundicola AmH]
 gi|223589714|gb|ACM93450.1| ribonucleoside-diphosphate reductase, alpha subunit [Nautilia
           profundicola AmH]
          Length = 812

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 291/848 (34%), Positives = 436/848 (51%), Gaps = 129/848 (15%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P + ++  +G     +  ++    + AC GL+ V    +  +      DG++ ++++  L
Sbjct: 3   PGITVIKRNGRREPLDISKIRKYTKAACEGLEGVDYTELELDAKLQFRDGITTAEIQDTL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++   I+ + PN+  V AR  L  L   V                      +   Y +
Sbjct: 63  IKTAVDKIDIDRPNWNYVAARLFLYDLYHRVTGFTG---------------YNHLKEYFQ 107

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           +G +A  +   + + FDL  L   LK ERD  F YLG++ LYDRY +   NG  IE+PQ 
Sbjct: 108 KGEEAGRILLGLKEKFDLDDLNAYLKPERDLQFTYLGIKTLYDRYIIKDRNGEPIELPQQ 167

Query: 320 FFMRVAMGLALKETEKE-------------------KRAVEFYNLLSSFHFMCSTPTLFN 360
            FM VAM LA  ET  E                     A +FY+++S F  M +TPTL N
Sbjct: 168 LFMGVAMFLAQNETNYESIPEEERANIPNDPKAIRGYWAKKFYDVISKFEVMVATPTLSN 227

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           + T   QLSSC++ ++ D++ GIF   +E A+L+K+ GG+G D + +R LG+ I      
Sbjct: 228 ARTTRHQLSSCYVGSMNDNIEGIFDDFKEMALLSKFGGGIGWDVSRIRALGSFIDNHKNA 287

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + GVIP+LK+ ND A+AV+Q G RKGA+  YLE WH+DV +FLDL+KN+G++RRR HD+ 
Sbjct: 288 AGGVIPWLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDVLDFLDLKKNSGEERRRAHDLF 347

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            A WI DLFMKRV ++A WTLF P EV DL DLYG+EFE  Y  YE   +  +      I
Sbjct: 348 PALWISDLFMKRVQEDALWTLFDPYEVKDLTDLYGEEFEKRYIEYENDPNIAK----ETI 403

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW+K+L   +ETG+P++ FKD  N R+   H G++ SSNLCTEI  N+      V 
Sbjct: 404 KAKELWKKILLEYYETGNPFLCFKDNANRRNQNDHAGIIRSSNLCTEIFQNTEPNHYKVK 463

Query: 601 NL---GSINLLAHFANNQFDY--------------------------------------- 618
                GS N+     +   ++                                       
Sbjct: 464 VTFEDGSFNMYDEEEDVTVEHGDVKLTKKAKKITSIDAINGKQVYIVEKVPVNGKTAVCN 523

Query: 619 ------------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                       +K+   +  A+R+LDNVID+N + + K K +N  +RAIGLG MG    
Sbjct: 524 LASVNLSKVNTPEKIKEVVPVAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQM 583

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    I + S E +++ DE  E IS++AI  S EL++E+G Y  F+GS W +G+ PIDS 
Sbjct: 584 LAEKQIFWGSEEHLKLIDEVFEGISYYAIKTSAELSEEKGIYPEFEGSRWSKGILPIDSA 643

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
              A+   E  +    +  W+ L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y
Sbjct: 644 NEEAKRLVERDLFSAMQYDWEGLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPVY 702

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           +  + + N+SG   VV                               +  +  +    + 
Sbjct: 703 KRKWYEENLSGLIPVV-------------------------------VPNLSAETYMFYT 731

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            A+E+D   L+++A+ RQKW+DQ QSLN+++   + SG+ L+ IY   W +GLK+ YYLR
Sbjct: 732 PAYELDQTVLVKAAAIRQKWVDQGQSLNIFITTDKASGRYLNEIYTLGWKLGLKSFYYLR 791

Query: 905 SRSATSVE 912
           S+S    E
Sbjct: 792 SQSPEVQE 799


>gi|149194866|ref|ZP_01871960.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149135025|gb|EDM23507.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 813

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 286/844 (33%), Positives = 431/844 (51%), Gaps = 130/844 (15%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P + ++  DG     +  ++    + AC GL  V    +  +      DG++  +++  L
Sbjct: 3   PGITVIKRDGRREPLDISKIRKYTKAACEGLDGVDYSELELDAKLQFRDGITTEEIQDTL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++   I+ + PN+  V AR  L  L   V                      +   Y E
Sbjct: 63  IKTAVDKIDIDKPNWNFVAARLFLYDLYHRVTGYTG---------------YNHLREYFE 107

Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
            G +A  +   + + +DL  L + +K ERD  F YLG++ LYDRY +     + IE+PQ 
Sbjct: 108 RGERAGRILPGLKEKYDLDDLNSYIKPERDLQFTYLGIKTLYDRYIIKDKENNPIELPQQ 167

Query: 320 FFMRVAMGLALKETEKE--------------------KRAVEFYNLLSSFHFMCSTPTLF 359
            FM VAM LA  ET                         A +FY+++S F  M +TPTL 
Sbjct: 168 LFMGVAMFLAQNETNPNSIPNEDKDKVDLNNPKSIRGYWAKKFYDVISKFEVMVATPTLS 227

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+ T   QLSSC++ ++ D++ GIF   +E A+L+K+ GG+G D++ +R LG+ I     
Sbjct: 228 NARTTRHQLSSCYVGSMNDNIEGIFDDYKEMALLSKFGGGIGWDFSKIRALGSFIDNHKN 287

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + GVIP+LK+ ND A+AV+Q G RKGA+  Y+E WH+D+ +FLDL+KN+G++RRR HD+
Sbjct: 288 AAGGVIPWLKITNDIAIAVDQLGTRKGAIAVYIEPWHMDILDFLDLKKNSGEERRRAHDL 347

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             A WIPDLFMKRV ++  WTLF P E  DL +LYG+EFE  Y  YE + D  +    RK
Sbjct: 348 FPALWIPDLFMKRVEEDGLWTLFDPYETGDLTNLYGEEFEKKYIEYENREDITK----RK 403

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW+K+L   +ETG+P++ FKD  N R+   H G++ SSNLCTEI  N+      V
Sbjct: 404 VKAKELWKKILLEYYETGNPFLCFKDNANKRNQNDHSGIIRSSNLCTEIFQNTEPNHYKV 463

Query: 600 CN-------------------------------LGSINLLAHFANNQFD---YDKLASTI 625
                                            + S++ +        +   +D   +  
Sbjct: 464 KVTFEDGSEEYFNEDDDVKVSLGDVEVVVKGKKITSLHYINGKKVYIVEKVPFDGKTAVC 523

Query: 626 RTA--------------------VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
             A                    +R+LDNVID+N + + K K +N  +RAIGLG MG   
Sbjct: 524 NLASVNLSKVNTPEKIAEVVPIAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQ 583

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    I + S E +++ DE  E IS+ AI  S ELA+E+GAY  F+GS W +G+ PID+
Sbjct: 584 LLAERQIFWGSDEHLKLIDEIFEGISYWAIKTSAELAEEKGAYPEFEGSRWSKGILPIDT 643

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
               A+   E  +    +  W  L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P 
Sbjct: 644 ANEEAKKLVERDLFSAMQYDWKSLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPV 702

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           Y+  + + N+SG   VV                               +  +  D    +
Sbjct: 703 YKRKWYEENLSGLIPVV-------------------------------VPNLSADTYMFY 731

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYL 903
             A+E+D   L+++A+ RQKWIDQ QSLN+++   + SG+ L+ IY   W +GLK+ YYL
Sbjct: 732 TPAYELDQRILVKAAAIRQKWIDQGQSLNIFITTDKASGRYLNEIYMLGWKLGLKSFYYL 791

Query: 904 RSRS 907
           RS+S
Sbjct: 792 RSQS 795


>gi|237752016|ref|ZP_04582496.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376583|gb|EEO26674.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 790

 Score =  529 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 296/866 (34%), Positives = 435/866 (50%), Gaps = 131/866 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L ++  +G +   +  +++   +++  GL+ VS   +  +      D ++  +++  LI
Sbjct: 1   MLTVVKRNGRIEPLDVTKIQKHTKDSVLGLEGVSQSELEVDAKLQFRDKITTQEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L   V                   Y      + + 
Sbjct: 61  KTAVDKIDIDCPNWTYVAARLFLYDLYHRVNGFNG--------------YKSLAEYFEKG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R++      F+L  L   +  ERD  F YLG++ LYDRY L    G+ IE+PQ  F
Sbjct: 107 ERENRIIGGLKEKFNLDRLNKKIVPERDLQFNYLGVKTLYDRYLLKDKQGNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD + 
Sbjct: 167 MGIAMFLAQNEKDPNYWAEQFYDLLSKFEVMVATPTLSNARTPRHQLSSCYVGSTPDSIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GVIPFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRRTHD+  A WIPDLFMKRV ++  W+L
Sbjct: 287 GTRKGAISVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVGEDGLWSL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y  YE+     E  V   + A  LW+K+LT  FE G P++
Sbjct: 347 FDSLACADLTNLYGEAFEARYIQYEQD----ESIVRETVKAKDLWKKILTSYFEIGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+    T +                      
Sbjct: 403 CFKDNANRANPNAHAGIIRSSNLCTEIFQNTEPNTTFIRVEFEDGTIEDYPEYQPIITDY 462

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  A+R
Sbjct: 463 GIEKLSNKITSTDSIGGKKVFIAQRESKDGKTAVCNLASINLSKIHTKEDIERVVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S   ++  D  ME +
Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDNRAIGLGVMGEAQMLAESRIEWGSDAHLQKIDAIMESV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI +S ELAQE+G YS F GS W +G+FPID     A+   +          W+ L+
Sbjct: 583 SYNAIKSSCELAQEKGVYSDFVGSEWSKGIFPIDKANNEAKALVDRGGLFAYDYDWNALR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EEVKTKGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W+                           + +A+EID   L+++A+ RQKWIDQ 
Sbjct: 699 -SLDNWN--------------------------YYTSAYEIDQRLLVKAAAVRQKWIDQG 731

Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QS N+++  +  SGK L+ IY  AW +GLK+TYYLRS+S    E ST             
Sbjct: 732 QSTNIFMALNLASGKYLNEIYTLAWKLGLKSTYYLRSQSI-EAEISTDTMDRSI------ 784

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               ECE CQ
Sbjct: 785 --------------------ECEGCQ 790


>gi|118474247|ref|YP_892927.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413473|gb|ABK81893.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 791

 Score =  529 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 300/869 (34%), Positives = 437/869 (50%), Gaps = 137/869 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTSEAVAGLDNVSLSELEVDAKIQFRDNITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +                           Y E+G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDLYHKTTGFSG---------------YNSLKEYFEKG 105

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
            K   +   + + +DL  L   +K ERD  F YLG++ LYDRY +       IE+PQ  F
Sbjct: 106 EKNGRILLGLKEKYDLEDLNAYIKPERDLQFTYLGIKTLYDRYLIKDRNAKPIELPQHMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDSQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKR++QN  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRLSQNERWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  DL DLYG EFE  Y  YE+     +      + A  LW+K+LT  FETG P++
Sbjct: 346 FDPADTPDLCDLYGDEFEKRYIEYEKDPHIAKS----SMLAKELWKKILTNYFETGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------------- 605
            FKD  N  +P  H G++ SSNLCTEI  N+     +   V + GS              
Sbjct: 402 CFKDNANRANPNAHKGIIRSSNLCTEIFQNTEPNYYQTKVVFDDGSFKLFDESEDITVDG 461

Query: 606 -----------------------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +A  +  A+R
Sbjct: 462 GYTKKAKKITALDRLDNKDIFIVEKGIKEGKTAVCNLASINLSKINSKEDIARVVPIAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   R+IGLG+MG    L    I + S E +E  DE ME I
Sbjct: 522 MLDNVIDLNFYPHAKVKHTNLASRSIGLGVMGEAQMLAEKGIIWGSYEHLEFIDEVMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747
           S++AI AS  LA E+GAY  F+GS W +G+FPID     A+    R  L    +    W+
Sbjct: 582 SYNAIYASSNLAVEKGAYPDFEGSNWSKGIFPIDMANKNAKALINRGGLFDQNS--CDWE 639

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+ +VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V   L 
Sbjct: 640 KLRAKVKEGGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPSVVPNL- 698

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                    +                         + +  A+E+D   +I++ + RQKWI
Sbjct: 699 ---------NTETW---------------------QFYTPAYELDQKLIIKAGAVRQKWI 728

Query: 868 DQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           DQ QSLN+++   + SG+ L  IY  AW +G+K+TYYLRS S               L+ 
Sbjct: 729 DQGQSLNIFMSLDKASGRYLSEIYTLAWELGVKSTYYLRSES----------PDSSHLDN 778

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            P+                    ECE CQ
Sbjct: 779 KPMDRSV----------------ECEGCQ 791


>gi|194377918|dbj|BAG63322.1| unnamed protein product [Homo sapiens]
          Length = 570

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 221/581 (38%), Positives = 342/581 (58%), Gaps = 19/581 (3%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA 
Sbjct: 3   DDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTAR 62

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  
Sbjct: 63  YVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVET 122

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  ++    E
Sbjct: 123 NQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIGSQTE 177

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANN 614
           TG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + +
Sbjct: 178 TGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEH 237

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+
Sbjct: 238 TYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPF 297

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +      
Sbjct: 298 ESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP---- 353

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  
Sbjct: 354 ------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRV 407

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T +EI   
Sbjct: 408 LSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQK 467

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  +
Sbjct: 468 TVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQ 527

Query: 914 STLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            TL          V   +     ++  +  S  +  EC +C
Sbjct: 528 FTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 568


>gi|223038384|ref|ZP_03608678.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           rectus RM3267]
 gi|222880241|gb|EEF15328.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           rectus RM3267]
          Length = 791

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 299/870 (34%), Positives = 437/870 (50%), Gaps = 139/870 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+++G
Sbjct: 61  TAVEKIDIDRPNWTFVAARLFLYDLYHKVTGFSG---------------YNHLRDYLQKG 105

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            KA  +   + + +DL  L + ++ ERD  F YLG++ LYDRY +    G+ IE+PQ  F
Sbjct: 106 EKAGRIIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLVSKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +NA W+L
Sbjct: 286 GTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P EV+DL DLYG EFE  Y  YE      E      + A  LW+K+LT  FE+G P++
Sbjct: 346 FDPAEVADLCDLYGDEFEARYIAYE----NDEKIQKNVVMAKELWKKILTSYFESGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDNANKTNPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSERLFDEEEDVRVDS 461

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  AVR
Sbjct: 462 GIVKKAKKLSALDSIGGEQIFIVEKESLEGKTAVCNLASINLSKINKKEDIERVVPIAVR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L    + + S E + + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPW 746
           SF+AI AS  LA E+G Y  F+GS W +GV PID+    A+     R  L         W
Sbjct: 582 SFNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDENA--CDW 639

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V    
Sbjct: 640 SKLREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV---- 695

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  +  + +  A+E+D   L+ + + RQKW
Sbjct: 696 ---------------------------VPNLSPETWQFYTPAYELDQRVLVRAGAIRQKW 728

Query: 867 IDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           IDQ QSLN+++   + SG  L  IY  AW +GLK+TYYLRS S              KLN
Sbjct: 729 IDQGQSLNIFMSLDKASGGYLSEIYMLAWELGLKSTYYLRSES----------PDSEKLN 778

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            V                      ECE CQ
Sbjct: 779 NVADRSI-----------------ECEGCQ 791


>gi|254457625|ref|ZP_05071053.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Campylobacterales bacterium GD 1]
 gi|207086417|gb|EDZ63701.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Campylobacterales bacterium GD 1]
          Length = 788

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 287/819 (35%), Positives = 433/819 (52%), Gaps = 104/819 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G     +  +++     A   L +VS   +  +   +  DG++ ++++  LI
Sbjct: 1   MITIIKRNGRTEPLDITKIQKYTSAAVKDLSNVSQSELEVDAQIHFRDGITSAEIQKTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V +R  +  L  +V                   Y      + + 
Sbjct: 61  KTAVDKIDIDAPNWTFVASRLFMFNLYHQVNGFTG--------------YGSLKKYFEKG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + RLL      +DL  L   +K ERD  F YLG++ LYDRY +     + IE+PQ  F
Sbjct: 107 EKEGRLLQGLADMYDLDRLEKHIKPERDMLFNYLGVKTLYDRYLIKDRANNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA +E EK + A++FY+++S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQREEEKHEWAIKFYDMVSQFQVMLATPTLSNARTTRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF +  E AML+K+ GG+G DWT +R +G++I G    + G +PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYAEMAMLSKFGGGIGWDWTGIRSMGSYIDGHKNAAGGTVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WHID+ +FLDL+KN+G++RRR HD+  A W+ DLFM+RV ++A WTL
Sbjct: 287 GTRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPAMWLNDLFMQRVQEDAIWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  +L  LYG+EF   Y+  E      E  V  K+ A  LW+K+LT  FETG P++
Sbjct: 347 FDPYDTKELATLYGEEFNKRYKELEED----ESIVKEKVKAKNLWKKILTSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----CNLGSI------------ 605
            FKD  N  +P  HVGV+ SSNLCTEI  N++     +     N  SI            
Sbjct: 403 CFKDNANRANPNNHVGVIRSSNLCTEIFQNTNPNHYKIKFIFENGESISYEEDEIVKVDS 462

Query: 606 -----------------------------------NLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  AVR
Sbjct: 463 GMEKPAKKVTALDSLGGLPIYVVEKEKINGDTAVCNLASVNLSRVNTKEDIDRIVPIAVR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID+N + IEK K++N   R+IGLG+MG    L    I + S E  +  DE ME +
Sbjct: 523 CLDNVIDLNFYPIEKVKRTNMKSRSIGLGVMGEAEMLAEQSITWGSQEHFDKIDEIMEAV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           SF+ ISAS +LA E+G Y  F+GS W +GV P+D          +      S   WD+L+
Sbjct: 583 SFNTISASSDLALEKGIYPDFEGSQWSKGVMPMDHANAEVRNLVDRGGLFASTYEWDDLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +VK  GMRN   MAIAPT++I+ + G +Q+I+P ++  + + N+SG   VV        
Sbjct: 643 AKVKKQGMRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWFEENLSGLIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  +    +  A+E++   LI++A+ RQKW+DQ 
Sbjct: 695 -----------------------VPNLSPETWAYYTPAYELNQTLLIKAAAIRQKWLDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QSLN+++   + SG+ L+ IY  AW +GLK+TYYLRS+S
Sbjct: 732 QSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQS 770


>gi|157736291|ref|YP_001488974.1| ribonucleotide-diphosphate reductase subunit alpha [Arcobacter
           butzleri RM4018]
 gi|157698145|gb|ABV66305.1| ribonucleoside-diphosphate reductase, alpha chain [Arcobacter
           butzleri RM4018]
          Length = 794

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 285/820 (34%), Positives = 428/820 (52%), Gaps = 101/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   +G     +  +++ +  EA  GL+ VS   +  + +    DG+   D++ ALI
Sbjct: 2   AIMIQKRNGRKELLDITKIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI 61

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L   V    +    +A  H            YI+ 
Sbjct: 62  KTAVEKIDIDVPNWTFVAARLFLFDLYHRVGIATHGVKGEAYCH---------LKDYIKF 112

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320
           G++A  L  S+ D +DL  L   +   RD  F YLG++ LYDRY +       IE+PQ  
Sbjct: 113 GIEAGRLIPSIADGYDLDELNAYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQM 172

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +K+ +A EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 173 FMAIAMFLAQNEKDKQSKAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF   +E A+L+KY GG+G DW  +R LG  I      + G +PFLK+ ND A+AV+Q
Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQ 292

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH+D+ +F+DL+KN+G++RRR HD+  A WI DLFM+RV +++ WT
Sbjct: 293 LGTRKGAIAVYLEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWT 352

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EV DL + +G EF+  Y  YE      E     ++ A  LW+K+LT  FE G P+
Sbjct: 353 LFDPYEVRDLSETFGDEFKAKYVAYE----NDETITKDRMKAKDLWKKILTSYFEVGSPF 408

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601
           + +KD  N  +P  HVG + SSNLCTEI  N++     +                     
Sbjct: 409 LCWKDTANRTNPNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVD 468

Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   + TA+
Sbjct: 469 GGVTKKANKVSALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAI 528

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N + + K K +N   R+IGLG+MG    L    + + S E  +  D+ ME 
Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEA 588

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS++ I +S +LA E+G Y +F+GS W +G+ P D          +  +   +   WD L
Sbjct: 589 ISYNTIKSSSDLASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDL-FDTSYDWDVL 647

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 648 REKVKKDGMRNGYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------- 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   + R+  +    +  AFEID + +I++A+ RQKWIDQ
Sbjct: 701 ------------------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQ 736

Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N+++   + SGK L  IY  AW +GLK+TYYLRS+S
Sbjct: 737 GQSTNIFMSLDKASGKYLHEIYTLAWKLGLKSTYYLRSQS 776


>gi|295103294|emb|CBL00838.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Faecalibacterium prausnitzii SL3/3]
          Length = 817

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 263/895 (29%), Positives = 416/895 (46%), Gaps = 126/895 (14%)

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + KAF   +G+G     R  D       + +  +L +    + + +E +QD+VE +LM+ 
Sbjct: 1   MKKAF---DGQGKEIGSREMD-------EILATVLNNLSVTVPLTVERVQDEVERTLMER 50

Query: 110 GHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166
           GH+++ + Y+LYRE+RS    VR   + +  D  +   L+ +  D T   ++   L+M  
Sbjct: 51  GHYEVAKAYILYREKRSALRRVRHTIARTVGDDSLDEVLRRIQMDFTEEVYSLAALQMKF 110

Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLL 225
           E  C                     G++E +   AL  ++  L   E P +  + AR L 
Sbjct: 111 ESFCRL-------------------GMTEDERAEALTKAAVELTTAEAPKWEFIAARLLN 151

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
              R        +  Q+     +  LY +      ++G+    +       ++    + L
Sbjct: 152 HSFR-------CRNAQEWEGRGVCDLYGK-LRYLTDKGLYGDYILAHYTHEEIAMAEDFL 203

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFY 343
             ERD  F Y GL +L  RY +       +E PQ  F+ +A+ LA+ E +++      FY
Sbjct: 204 CPERDELFTYSGLDLLLKRYVIQSRSRVPLETPQEMFLGIALHLAMNEGSDRMGWVKRFY 263

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           ++LS      +TPT+ N+   + QLSSCF+ TVPD L GI+ +L   A ++K+ GG+G  
Sbjct: 264 DMLSRMEVTMATPTMSNARKPYHQLSSCFVDTVPDSLDGIYRSLDNFAKVSKFGGGMGMY 323

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R+GAV  YL+ WH D+ EFL
Sbjct: 324 FGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFL 383

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-----SDLHDLYGK 516
            LR N GDDR + HD+  A   PDLF +   +N    W L  P E+       L D +G 
Sbjct: 384 QLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEENIDAPWHLMCPHEILTVKGYALEDYWGT 443

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           E+E  Y +        +    R ++   + R +L    ETG P+   +D  N  +P  H 
Sbjct: 444 EWEKRYLDCVNDPRIEK----RSVTVKDIVRLVLRSAVETGTPFAFNRDSVNHMNPNGHT 499

Query: 577 GVVHSSNLCTEITLNSSSEETA-----------------------VCNLGSINLLAHFAN 613
           G+++ SNLCTEI  N +  E                         VCNL S++L      
Sbjct: 500 GMIYCSNLCTEIAQNMAPIEHISTEVHTENGDTIVVTATRPGEFVVCNLASLSLGNLPVE 559

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              D   +  T+ TA+R LDNVID+N + +E A+ +N  +R+IGLG+ G+   L    I 
Sbjct: 560 ---DEAYMERTVETAIRALDNVIDLNFYPLEYARLTNQKYRSIGLGVSGYHHMLAKRGIH 616

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S E +   D   E I++ A+ A   LA+E+G Y+ F+GS W  G              
Sbjct: 617 WESDEHLAFTDAVFELINYAAVKADTALAREKGRYALFEGSDWQTG-------------- 662

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                   +   W  L K V   GMRN+  +A+APT++ + + G S  IDP  +  +++ 
Sbjct: 663 AYFEKRGYTSEKWRALAKTVAVQGMRNAYLLAVAPTSSTSILSGTSAGIDPIMKKFFLEE 722

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                   V                                  +  D    +  A  ID 
Sbjct: 723 KKGSMLPRVAP-------------------------------ELSMDTWWYYKAAHLIDQ 751

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            W + +A  RQ+ IDQAQS+NLY+ ++ S +++  +Y +AW  G+KT YY+RS++
Sbjct: 752 SWSVRAAGLRQRHIDQAQSMNLYITNDYSMRQVLRLYLEAWRAGVKTIYYVRSKA 806


>gi|242310744|ref|ZP_04809899.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pullorum MIT 98-5489]
 gi|239523142|gb|EEQ63008.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pullorum MIT 98-5489]
          Length = 788

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 299/866 (34%), Positives = 440/866 (50%), Gaps = 133/866 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L ++  DG +   +  +++    ++  GL+ VS   +  +   +  D ++  +++  LI
Sbjct: 1   MLTVIKRDGRIEPLDVTKIQKYTHDSVVGLEGVSQSELEVDAKLHFRDRITTQEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L  +V      K  K      +             
Sbjct: 61  KTAVDKIDIDCPNWTFVAARLFLYDLYHKVNGFNGYKTLKEYLEIGEK------------ 108

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R++      F+L  L   +  +RD  F YLG++ LYDRY L    G+ IE+PQ  F
Sbjct: 109 --ENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MGIAMFLAQNEDDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GV+PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVVPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRRTHD+  A WIPDLFMKRV ++  W L
Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVAEDGLWNL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y+ YE      E      I A  LW+++LT  FE G P++
Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYEAD----ESIPKETIKAKDLWKRILTNYFEVGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+   +  +                      
Sbjct: 403 CFKDNANRANPNYHSGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIQDYEEYQEVLTDC 462

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  A+R
Sbjct: 463 GILKSSNKITSTDSINGKKVFISQRESVDGKTAVCNLASINLSKINTKEDIERVVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S + +E  DE ME I
Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIEWGSQKHLEKIDEIMEMI 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI+AS +LAQE+G Y+ F GSLW QG+FPID     A+   +          WD L+
Sbjct: 583 SYNAINASCKLAQEKGVYNDFAGSLWSQGIFPIDKANNEAKALVDRGGLFGFIYDWDSLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              + W+                           + +A+EID   +I++A+ RQKWIDQ 
Sbjct: 699 -SLENWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QS N++  LD+ SGK L+ IY  AW +GLK+TYYLRS+S    E ST+            
Sbjct: 732 QSTNIFISLDKASGKYLNDIYSLAWRLGLKSTYYLRSQS-VEAENSTMDRSI-------- 782

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               ECE CQ
Sbjct: 783 --------------------ECEGCQ 788


>gi|315635422|ref|ZP_07890688.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
           butzleri JV22]
 gi|315480180|gb|EFU70847.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter
           butzleri JV22]
          Length = 794

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 285/820 (34%), Positives = 429/820 (52%), Gaps = 101/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   +G     +  +++ +  EA  GL+ VS   +  + +    DG+   D++ ALI
Sbjct: 2   AIMIQKRNGRKELLDITKIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI 61

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L   V    +    +A  H            YI+ 
Sbjct: 62  KTAVEKIDIDVPNWTFVAARLFLFDLYHRVGIATHGVKGEAYCH---------LKDYIKF 112

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320
           G++A  L  S+ D +DL  L + +   RD  F YLG++ LYDRY +       IE+PQ  
Sbjct: 113 GIEAGRLIPSIADGYDLDELNSYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQM 172

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +K+ +A EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 173 FMAIAMFLAQNEKDKQSKAKEFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF   +E A+L+KY GG+G DW  +R LG  I      + G +PFLK+ ND A+AV+Q
Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQ 292

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH+D+ +F+DL+KN+G++RRR HD+  A WI DLFM+RV +++ WT
Sbjct: 293 LGTRKGAIAVYLEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWT 352

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P EV DL + +G EF+  Y  YE      E     ++ A  LW+K+LT  FE G P+
Sbjct: 353 LFDPYEVRDLSETFGDEFKAKYIAYE----NDETITKDRMKAKDLWKKILTSYFEVGSPF 408

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601
           + +KD  N  +P  HVG + SSNLCTEI  N++     +                     
Sbjct: 409 LCWKDTANRTNPNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVD 468

Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   + TA+
Sbjct: 469 GGVTKKANKVSALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAI 528

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N + + K K +N   R+IGLG+MG    L    + + S E  +  D+ ME 
Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEA 588

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS++ I +S +LA E+G Y +F+GS W +G+ P D          +  +   +   WD L
Sbjct: 589 ISYNTIKSSSDLASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDL-FDTSYDWDVL 647

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 648 REKVKKDGMRNGYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------- 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   + R+  +    +  AFEID + +I++A+ RQKWIDQ
Sbjct: 701 ------------------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQ 736

Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N+++   + SGK L  IY  AW +GLK+TYYLRS+S
Sbjct: 737 GQSTNIFMSLDKASGKYLHEIYTLAWKLGLKSTYYLRSQS 776


>gi|313887772|ref|ZP_07821454.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846381|gb|EFR33760.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 842

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 275/913 (30%), Positives = 443/913 (48%), Gaps = 116/913 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+     FD  KI  AI KAF +V          V  +I          LL++  
Sbjct: 1   MKILKRDKREVDFDHLKIKNAIEKAFDSVGK------SYVDSVINAYALDIKETLLKNYD 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E+IQD VE  L+     ++ + Y+LYR   S+ R       +       LKI+
Sbjct: 55  PKNPPTVEEIQDLVELKLIDEKEIEVVKAYILYRNRHSEERQILDKFANYITDDKVLKIL 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                  +++ K+           L++     +  +    +    S+    + +I ++  
Sbjct: 115 K--FVRKTYDPKK---------YELEN-----LYKKFESFVKKDQSQDAYLSEIIKAASE 158

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           L +K+ P +  + A FL   L +++   + +      + ++  L         E+G+  +
Sbjct: 159 LTDKDAPRWEFIAALFLNYDLEKKIKANLEEFKINNFYEKIVFL--------TEKGLYGK 210

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326
            + E+    D++ L + +   R+    Y GL +L  RY +   +G  +E  Q  FM +AM
Sbjct: 211 YILENYSKEDILELEDYIDNSRNRLLNYSGLDLLIKRYVIRSHDGRFVESIQEMFMGIAM 270

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            LA+ E  +   A +FY++ SS     +TPT+ N+   + QLSSCF+ TVPD L GI+ +
Sbjct: 271 HLAIPEKNRIYWAKKFYDIYSSLKVTVATPTMSNARKPYNQLSSCFIDTVPDTLKGIYRS 330

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           +   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+G
Sbjct: 331 IDNFAQISKHGGGMGLYFGKVRATGSDIRGFKGVAGGVIRWIKLANDTAVAVDQLGVRQG 390

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504
           +V  YL+ WH D+ EFL LR N GDDR + HD+  A   P+LF +   +  NA W +F P
Sbjct: 391 SVACYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAISYPNLFFELAEKDINATWYMFDP 450

Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            EV       L D YGKE+E  Y          E    R++S   L R ++  L ETG P
Sbjct: 451 HEVLAKKGYSLEDFYGKEWEEKYRECIED----ESISRREMSVKDLVRLIIKSLTETGTP 506

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596
           +  ++D  N  +P +HVG+++SSNLCTEI  N S+ E                       
Sbjct: 507 FAFYRDNVNEMNPNKHVGMIYSSNLCTEIMQNMSAIETLDTTIETEDGDEVIVTKTKPGD 566

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             VCNL S+ L      +  D  +L   + T VR LDNVID+N + I  AK +N  +R+I
Sbjct: 567 FVVCNLASLVLGNI---DLEDDKELKDIVATTVRALDNVIDLNYYPIPYAKVTNRKYRSI 623

Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           GLG  G+  AL    + ++  E  ++ AD+  E I+FHA++AS+E+A+E+G+Y  F+GS 
Sbjct: 624 GLGTSGYHHALVKAGMAFSDIEDHLKWADDLYERINFHAVTASMEIAKEKGSYDFFEGSD 683

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W+ G              +   +       W++L++ VK  G+RN   MAIAPT + + I
Sbjct: 684 WENG--------------NYFDLRDYKDAKWNKLREEVKANGLRNGYIMAIAPTGSTSII 729

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              S  +DP     +++         V      +L  +  W                   
Sbjct: 730 AATSAGVDPIMNRYFLEEKKGSILPRVAP----DLTPQSFW------------------- 766

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++  A E+D  ++IE+A+ RQ+ IDQAQS+N Y+  + + +K+  +Y +A  
Sbjct: 767 --------LYENAHELDQNFVIEAAAIRQRHIDQAQSINFYITTDFTMRKILNLYIKAAK 818

Query: 895 MGLKTTYYLRSRS 907
             LK+ YY+RS+S
Sbjct: 819 EKLKSVYYVRSKS 831


>gi|255323617|ref|ZP_05364747.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           showae RM3277]
 gi|255299331|gb|EET78618.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           showae RM3277]
          Length = 791

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 298/870 (34%), Positives = 437/870 (50%), Gaps = 139/870 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA +GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVLKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+++G
Sbjct: 61  TAVEKIDIDRPNWTFVAARLFLYDLYHKVTGFSG---------------YNHLRDYLQKG 105

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            KA  +   + + +DL  L + ++ ERD  F YLG++ LYDRY +    G+ IE+PQ  F
Sbjct: 106 EKAGRVIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQHMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW  VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +NA W+L
Sbjct: 286 GTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P EV+DL DLYG EFE  Y  YE      E      + A  LW+K+LT  FE+G P++
Sbjct: 346 FDPAEVADLCDLYGDEFEARYIAYE----NDEKIQKNVVMAKELWKKILTSYFESGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSEQLFDEEEDVTVDS 461

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  AVR
Sbjct: 462 GITKKAKKLSALDSIDGKQIFIVEKESVEGKTAVCNLASINLSKINKKEDIERVVPIAVR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L    + + S E + + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPW 746
           S++AI AS  LA E+G Y  F+GS W +GV PID+    A+     R  L         W
Sbjct: 582 SYNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDENA--CDW 639

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V    
Sbjct: 640 SKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV---- 695

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +  +  + +  A+E+D   L+ + + RQKW
Sbjct: 696 ---------------------------VPNLSPETWQFYTPAYELDQRVLVRAGAIRQKW 728

Query: 867 IDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           IDQ QSLN+++   + SG  L  IY  AW +GLK+TYYLRS S              KLN
Sbjct: 729 IDQGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES----------PDSEKLN 778

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            V                      ECE CQ
Sbjct: 779 NVADRSI-----------------ECEGCQ 791


>gi|154149160|ref|YP_001407242.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           hominis ATCC BAA-381]
 gi|153805169|gb|ABS52176.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           hominis ATCC BAA-381]
          Length = 793

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 297/819 (36%), Positives = 433/819 (52%), Gaps = 105/819 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  ++     E+  GL +VS   +  +      D +S  +++  LI 
Sbjct: 1   MKVVKRNGRTEELDISKIRKYTRESIEGLDNVSLSELELDAKIQFRDMISTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V T                 Y      +    
Sbjct: 61  TAVEKIDVDQPNWTFVAARLFLYDLYHKVTTFNG--------------YNSLREYFERGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322
            + ++L      +DL  L + +K +RD  F YLG++ LYDRY L  N    IE+PQ  FM
Sbjct: 107 KEGKILLGLKEKYDLDDLQDYIKPQRDLQFTYLGIKTLYDRYLLKDNEARPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + +  A +FY+LLS F  MC+TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNELDCQTWAKKFYDLLSKFEVMCATPTLSNARTPRHQLSSCYVGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + +E A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSFKEMALLSKFGGGIGWDWSKVRAIGGSIDGNKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+ETWH+D+ +FLDLRKN+G++RRR H++  A WI DLFMKR+ +NA WTLF
Sbjct: 287 TRKGAIATYIETWHMDIGDFLDLRKNSGEERRRAHELFPALWINDLFMKRLEKNANWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P EVSDL D YG+EFE  Y  YE  +   +      I A  LW+K+LT  FE+G P++ 
Sbjct: 347 DPAEVSDLCDCYGEEFEKKYIEYENNSKISKSL----IPAKELWKKILTSCFESGMPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---AVCNLGSI-------------- 605
           FKD  N  +P  H G++ SSNLCTEI  N+           N GSI              
Sbjct: 403 FKDNANKANPNAHEGIIRSSNLCTEIFQNTRPNHYKIKVTFNDGSIKLFEEEDDITLDNG 462

Query: 606 ----------------------------------NLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     + +   +  A+R+
Sbjct: 463 LIKKGKKITSLDALDGKDVFCVEKAYDEGLTAVCNLASINLSKINTKEDIQRVMPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVI++N +   K K +N   RAIGLG+MG    L    IP+ S E  E  D+ ME IS
Sbjct: 523 LDNVINLNFYPHIKVKHTNLKTRAIGLGVMGEAQMLATKGIPWGSYEHFEFIDKIMENIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELK 750
           ++AI AS  LA E+G Y  F+GS W +G+ PID     A+   +   +       W  L+
Sbjct: 583 YNAILASSNLAIEKGKYPDFEGSNWSKGIMPIDLANEEAKALVKRGGLFDEDGCDWKYLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  +++  A+E+D   LI++A+ RQKWIDQ 
Sbjct: 695 -----------------------VPNLSPDTWQLYTPAYELDQRLLIKAAAVRQKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QSLN++  L++ S + L+ IY  AW +GLK+TYYLRS+S
Sbjct: 732 QSLNIFISLEKSSARILNDIYTLAWKLGLKSTYYLRSQS 770


>gi|157165034|ref|YP_001467815.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           concisus 13826]
 gi|112801827|gb|EAT99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           concisus 13826]
          Length = 791

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 298/868 (34%), Positives = 438/868 (50%), Gaps = 135/868 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    EA  GL +VS   +  +      D ++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKYTNEAVLGLNNVSLSELEVDAKIQFRDMITTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L  +V                      +   Y+ +G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLFDLYHKVTGFNG---------------YNHLKDYLAKG 105

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
            K   +   + + +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  F
Sbjct: 106 EKVGRIIPGLKEKYDLEDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 166 MAIAMFLAQNELDSQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLKV ND AVAV+Q 
Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+DV +FLDLRKN+G++RRR H++  A WI DLFMKRV +N  W+L
Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +VSDL DLYG+EFE  Y  YE      E      I A  LW+K+LT  FETG P++
Sbjct: 346 FDPAQVSDLCDLYGEEFEKRYLEYE----NDESIQKNTILAKELWKKILTSYFETGMPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N++     +                      
Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDITVDS 461

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  A+R
Sbjct: 462 GITKKAKKLSALDSLKGKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +  +K K +N   R+IGLG+MG    L   ++ + S E + + D  ME I
Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDE 748
           S++AI  S  LA E+G Y  F+GS W +G+ PID+    A+    D+  +   +   WD+
Sbjct: 582 SYNAIYTSSNLAVEKGIYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDENVCDWDK 641

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V      
Sbjct: 642 LREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV------ 695

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                    +  +  D  + +  A+E+D   LI++ + RQKWID
Sbjct: 696 -------------------------VPNLSPDTWQFYTPAYELDQRILIKAGAIRQKWID 730

Query: 869 QAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           Q QSLN+++   + SG  L  IY  AW +GLK+TYYLRS S              KLN V
Sbjct: 731 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES----------PDSEKLNDV 780

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                                 ECE CQ
Sbjct: 781 ADRSI-----------------ECEGCQ 791


>gi|225850412|ref|YP_002730646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Persephonella marina EX-H1]
 gi|225646207|gb|ACO04393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Persephonella marina EX-H1]
          Length = 847

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 215/944 (22%), Positives = 391/944 (41%), Gaps = 141/944 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+P KI+ AI KA  AV         +     + ++++ V  L +  K 
Sbjct: 4   KIRKRDGRIVPFNPEKITNAIWKAMQAV-------GEKDFSTAEKISKEVVRELERTLKP 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E IQD VE  L+++G  ++ + Y+LYR++R+++R  +    +   I     +  
Sbjct: 57  GEIPDVEQIQDIVERKLIEAGLARVAKAYILYRQKRAEIRKEKQQILNKKEIDE---VDK 113

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                  F+   L                                        + ++R L
Sbjct: 114 R------FDINALR---------------------------------------VLAARYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            +        + + L +++            ++                  ++ V+    
Sbjct: 129 NKDRAGKIIESPKQLFQRVAVNTALPSLLYDERVYSK----------KELKKQPVE---- 174

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
                DFD       LK   D+      L+ L   Y    N  R+++P +  ++  M   
Sbjct: 175 -----DFDPERYEGKLKI-GDYTLNRYHLEGLKRVYDRLNNERRMKIPFSKLLK--MIEK 226

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
                  +   ++Y+++    FM +TP L N G       +CF+  + D +  I   L+ 
Sbjct: 227 GDFESYGREIDQYYSIMVEKKFMPNTPVLVNFGNPLGMGMACFVLDMEDSIESIMETLKR 286

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A++ K  GG G +++ +R  G  I  T+GKS G I F+ + +     + QGG R+GA  
Sbjct: 287 AALIFKAGGGCGYNFSKLRPKGDFISTTHGKSSGPIAFMTLYDKMTDVIKQGGVRRGANM 346

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             L + H D+EEF+  +K       +  + N + ++ + F     +N  + L +P +   
Sbjct: 347 GILNSDHPDIEEFIVAKKGNV----QLTNFNISVFLKEDFWDYYRENKPYPLINPRD--- 399

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                    KV++ ++   L+  ++   +E+  P + F D  N 
Sbjct: 400 ------------------------GKVWKYVNPRNLFDTIVYEGWESAEPGLLFDDNINR 435

Query: 570 RSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--------DYDK 620
            +P     G + ++N C E+ L  +      C+LGSINL A               D+D 
Sbjct: 436 YNPFLETFGRIQATNPCGEVLLYPN----ESCDLGSINLWAFIKEYYDGNGRKVEVDWDG 491

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  T+R A R LDNV+DIN +  ++ +K    +R IGLG+MG    L  L IPY S +  
Sbjct: 492 LEKTVRIATRFLDNVLDINKYPFKEIEKETLKNRKIGLGIMGLADFLFELEIPYNSEDGR 551

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
              +  MEF+++++   S++LA+ERG + S+  S + +G  PI                 
Sbjct: 552 RWMERVMEFVNYYSKEESIQLAKERGKFPSYNKSFYRKGKLPIR----------GFEEKE 601

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +  L WD+L  ++K  G+RN+    IAPT +I+ I G +  I+P +  +Y K    G F 
Sbjct: 602 SWNLDWDKLIDKIKKHGLRNAFTTVIAPTGSISMIAGTTSGIEPIFALVYEKKVTVGTFY 661

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            V+      +++  ++D+ +I D+  ++GSI +I+ IP+  KK+  TA +I     +++ 
Sbjct: 662 YVDPVFEKTMEREGIFDDTLIKDVSKNEGSIQDIKYIPEKWKKVFVTAMDISAEDHVKAL 721

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QKW D + S  +    + + + +   Y  A  +G K     R +S   V  +  +  
Sbjct: 722 ASVQKWTDSSVSKTINFPEDATVEDMKRAYLLAHYLGCKGLTVYRYKSIKGVYVAGEEKK 781

Query: 920 DG---------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +          K   V +   +       I         C VC+
Sbjct: 782 EEAKLTPIRDVKAKGVSIYKESVVHEEAEIERGTKGKDICPVCE 825


>gi|315586644|gb|ADU41025.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
           pylori 35A]
          Length = 788

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 303/837 (36%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL DLYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTDLYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------------ 605
           + FKD  N  +P  H G++ SSNLCTEI  N+             GSI            
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGSIEFFEEKQLVTTD 461

Query: 606 ------------------------------------NLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|78778290|ref|YP_394605.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498830|gb|ABB45370.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Sulfurimonas denitrificans DSM 1251]
          Length = 788

 Score =  524 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 285/827 (34%), Positives = 440/827 (53%), Gaps = 107/827 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G     +  +++     A  GL +VS   +  +   +  DG++  +++  LI
Sbjct: 1   MVTIIKRNGRTEKLDISKIQKYTSAAVEGLSNVSQSELEVDAQIHFRDGITSKEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V +R  L  L  EV                   Y      +   
Sbjct: 61  KTAVDKIDIDAPNWTFVASRLFLFNLYHEVNGFTG--------------YCSLENYFERG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
             + RLL+     ++L  L   +K ERD  F YLG++ LYDRY +     + IE+PQ  F
Sbjct: 107 EKEGRLLYGLKGMYNLEELEKHIKPERDMLFNYLGVKTLYDRYLIKDKNSNPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA +E +KE+ A++FYN++S+F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQREEKKEEWAIKFYNMISTFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF +  E AML+K+ GG+G DWT VR +G++I G    + G +PFLK+ ND AVAV+Q 
Sbjct: 227 GIFDSYAEMAMLSKFGGGIGWDWTNVRSMGSYIDGHKNAAGGTVPFLKITNDIAVAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WHID+ +FLDL+KN+G++RRR HD+  A W+ DLFM+RV ++A WTL
Sbjct: 287 GTRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPALWLNDLFMQRVEEDAIWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +  +L  L+G+EF   Y   E+     E  +  K+ A  LW+K+LT  FETG P++
Sbjct: 347 FDPYDCRELTTLHGEEFNKKYVELEK----NEAIIKEKLKAKNLWKKILTSYFETGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  H G++ SSNLCTEI  N++     +                      
Sbjct: 403 CFKDNANRANPNSHSGIIRSSNLCTEIFQNTNPNHYKIKFIFQNGDSVSYEEEEIIEVDS 462

Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                         +    NL +   +     + +   +  A+R
Sbjct: 463 GLKKPAKKVTALDSIGGREIYVVEKEKINGDTAVCNLASVNLSRINTKEDIDRVVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID+N + IEK K++N   RAIGLG+MG    L    I + + E  +  DE ME +
Sbjct: 523 ALDNVIDLNFYPIEKVKRTNMKTRAIGLGVMGEAQMLAQEGISWGTQEHFDKIDEIMESV 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           SF+AISAS ++A E+G+YS ++GS W +G+ P+D      +   +      S   W+EL+
Sbjct: 583 SFNAISASSDIALEKGSYSEYEGSKWSRGIMPMDHATAEVKNLVDRGGLFASAYEWEELR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +VK  G+RN   MAIAPT++I+ + G +Q+I+P ++  + + N+SG   VV        
Sbjct: 643 TKVKNQGIRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWYEENLSGLIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  +    +  A++++   LI++A+ RQKW+DQ 
Sbjct: 695 -----------------------VPELSPETWAYYTPAYDLNQTLLIKAAAIRQKWLDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS---ATSVE 912
           QSLN+++   + SGK L+ IY  AW +GLK+TYYLRS+S   A+ VE
Sbjct: 732 QSLNIFITLDKASGKYLNEIYMLAWKLGLKSTYYLRSQSPEMASDVE 778


>gi|308182832|ref|YP_003926959.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori PeCan4]
 gi|308065017|gb|ADO06909.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori PeCan4]
          Length = 788

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 301/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNYA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|261839497|gb|ACX99262.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori 52]
          Length = 788

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +R+IGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRSIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|317178962|dbj|BAJ56750.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F30]
          Length = 788

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 301/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------------ 605
           + FKD  N  +P  H G++ SSNLCTEI  N+             G+I            
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTD 461

Query: 606 ------------------------------------NLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|208434597|ref|YP_002266263.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter
           pylori G27]
 gi|208432526|gb|ACI27397.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter
           pylori G27]
          Length = 788

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 301/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKYANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKVNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QSLN++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|15645304|ref|NP_207474.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori 26695]
 gi|2500207|sp|P55982|RIR1_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|2313806|gb|AAD14884.1| ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA)
           [Helicobacter pylori 26695]
          Length = 788

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QSLN++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSLNVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|109947415|ref|YP_664643.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           acinonychis str. Sheeba]
 gi|109714636|emb|CAJ99644.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           acinonychis str. Sheeba]
          Length = 788

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 304/837 (36%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNYPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAIWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG+EFE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLSELYGQEFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHTGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  SV LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                               S+        +    + +A++ID   LI +A+ RQKWIDQ
Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIRAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRVENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECHN 786


>gi|317180438|dbj|BAJ58224.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F32]
          Length = 788

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|297379875|gb|ADI34762.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
           pylori v225d]
          Length = 788

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 301/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQSL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|332673526|gb|AEE70343.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter
           pylori 83]
          Length = 788

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEYQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|308063531|gb|ADO05418.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Sat464]
          Length = 788

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++  WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDTMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKYANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|188527475|ref|YP_001910162.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Shi470]
 gi|188143715|gb|ACD48132.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Shi470]
          Length = 788

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 301/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYRMQIEYTDGAIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|217033693|ref|ZP_03439120.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
 gi|216943882|gb|EEC23319.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10]
          Length = 788

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGTIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +    + +A++ID   LI+ A+ RQKWIDQ
Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKVAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|307637366|gb|ADN79816.1| Ribonucleotide reductase of class Ia/alpha subunit [Helicobacter
           pylori 908]
 gi|325995959|gb|ADZ51364.1| Ribonucleotide reductase of class Ia,alpha subunit [Helicobacter
           pylori 2018]
 gi|325997553|gb|ADZ49761.1| Ribonucleotide diphosphate reductase alpha subunit [Helicobacter
           pylori 2017]
          Length = 788

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + ++ ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L  L I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAELQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|308062005|gb|ADO03893.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Cuz20]
          Length = 788

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 301/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMRIEYTDGTIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|317177497|dbj|BAJ55286.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F16]
          Length = 788

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 299/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|88597697|ref|ZP_01100930.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|88190001|gb|EAQ93977.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
          Length = 789

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 299/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLCEYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSCQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W                          + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -SLDTW--------------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|308184468|ref|YP_003928601.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SJM180]
 gi|308060388|gb|ADO02284.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SJM180]
          Length = 788

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   +
Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                               S+        +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|261838086|gb|ACX97852.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori 51]
          Length = 788

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 301/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W+                           + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|317014098|gb|ADU81534.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Gambia94/24]
          Length = 788

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|317010898|gb|ADU84645.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori SouthAfrica7]
          Length = 788

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 302/837 (36%), Positives = 438/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ L+DRY L   N   IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLHDRYLLKDANNYPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG+EFE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLSELYGQEFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VKT GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                               S+        +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECHN 786


>gi|57505360|ref|ZP_00371289.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016496|gb|EAL53281.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           upsaliensis RM3195]
          Length = 789

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 295/868 (33%), Positives = 433/868 (49%), Gaps = 137/868 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     N  +++    +A   L+ VS   +  +      DG++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      +    
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFERGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  +    IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKVEPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ +  D++ G
Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G +I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGNIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI D+FMKR+  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL +LYG+ FE  YE YE+     +  V   I A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEKD----DSIVKEIIDAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------------------- 602
           FKD  N  +P  H G++ SSNLCTEI  N+      +  +                    
Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVIIDGG 462

Query: 603 -------------------------------GSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     + LA  +  A+R+
Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E     DE ME +S
Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV---RDELAMNRTSRLPWDE 748
           + AI AS  LA E+G+Y  FKGS W +G+FPID     A+    R  L     S   WD+
Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRGGLFAQ--SSCDWDQ 640

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L  
Sbjct: 641 LRQKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL-- 698

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                   +                         + +  A+E+D   L+++A+ R KWID
Sbjct: 699 --------NLETW---------------------QYYTPAYELDQKILVKAAAVRGKWID 729

Query: 869 QAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           Q QSLN++L   + SG  L+ IY  A  +G+K+TYYLRS S              K+N  
Sbjct: 730 QGQSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSES----------PDSEKVNVA 779

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             +                   ECE CQ
Sbjct: 780 DRSI------------------ECEGCQ 789


>gi|217032473|ref|ZP_03437965.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
 gi|298736377|ref|YP_003728903.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
           pylori B8]
 gi|216945819|gb|EEC24440.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128]
 gi|298355567|emb|CBI66439.1| ribonucleoside-diphosphate reductase, alpha chain [Helicobacter
           pylori B8]
          Length = 788

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L N +K ERDF F YLG++ LYDRY L   N   IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|108563087|ref|YP_627403.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPAG1]
 gi|107836860|gb|ABF84729.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori HPAG1]
          Length = 788

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIDFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|153952334|ref|YP_001397294.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939780|gb|ABS44521.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 789

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY L    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLLKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W                          + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -SLDTW--------------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|283956202|ref|ZP_06373687.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283792356|gb|EFC31140.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 789

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDISKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|254779335|ref|YP_003057440.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori B38]
 gi|254001246|emb|CAX29221.1| Ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter
           pylori B38]
          Length = 788

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 439/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 TEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   +
Sbjct: 462 NNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                               S+        +    + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QSLN++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|315639325|ref|ZP_07894487.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           upsaliensis JV21]
 gi|315480651|gb|EFU71293.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           upsaliensis JV21]
          Length = 789

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 293/866 (33%), Positives = 431/866 (49%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     N  +++    +A   L+ VS   +  +      DG++  +++  LI 
Sbjct: 1   MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      +    
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFERGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  +    IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKAEPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E + ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ +  D++ G
Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI D+FMKR+  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL +LYG+ FE  YE YE+     +  V   I A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEKD----DSIVKEIIDAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------------------- 602
           FKD  N  +P  H G++ SSNLCTEI  N+      +  +                    
Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVVIDGG 462

Query: 603 -------------------------------GSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +     + LA  +  A+R+
Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E     DE ME +S
Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           + AI AS  LA E+G+Y  FKGS W +G+FPID     A+       +   S   WD+L+
Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRDGLFAQSSCDWDQLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 QKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                 +                         + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 ------NLETW---------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY  A  +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSES----------PDSEKINVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|57169016|ref|ZP_00368144.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
 gi|305432548|ref|ZP_07401709.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           coli JV20]
 gi|57019561|gb|EAL56251.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228]
 gi|304444259|gb|EFM36911.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter
           coli JV20]
          Length = 789

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 438/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L + +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+DV +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +  DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTQDLCDLYGEAFEKRYEEYEKD----ESIAKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDNANKANPNAHVGIIRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSFNGNKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEKIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           + AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   WD+L+
Sbjct: 583 YEAINASSNLAIEKGSYPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSECDWDKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKEDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  +  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLETWQYYTPAYELDQRILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNDIYQLAWELGVKSTYYLRSES----------PDSEKINIADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|227871658|ref|ZP_03990073.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium
           sinus F0268]
 gi|227842500|gb|EEJ52715.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium
           sinus F0268]
          Length = 839

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 271/918 (29%), Positives = 432/918 (47%), Gaps = 126/918 (13%)

Query: 26  IKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +  +Q +IKR      +   KI RA+ KAF++            Q+ +  L  +    L 
Sbjct: 1   MGAMQTIIKRGLLEEDYQGEKIERAMEKAFLSEGISVE------QEKLHFLLGKVEESLA 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + ++    V +E+IQ+ VE +LM +G +K+ R Y+LYRE+R+ +R  +   K +      
Sbjct: 55  EKHR----VSVEEIQNAVEEALMHNGDYKVARAYILYREKRTLLRHLRQRIKEEIGDNEI 110

Query: 145 LKIMMDDGTLIS-FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
             ++         ++  RL         G Q++S ++                     L 
Sbjct: 111 DDVLRRCQKDFPDYDLARLSAKYLSLSKGEQELSKRL-------------------ALLT 151

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  L  +E P + ++  R       +E+      +   + + ++  L         E+
Sbjct: 152 RAAAELTTQEEPGWERIAGRLRSYHFHKELKKAEESRNLHSFYDKLVYL--------TEQ 203

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFF 321
           G+    + E     ++  LA  +   R+  F Y GL +L  RY +  +   + E PQ  +
Sbjct: 204 GLYGAYILEHYSKEEVEELAKFIDQSRNDLFGYSGLDLLLSRYLIRDHQHVVLESPQEMY 263

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + ++M LA+KE   + +   EFY+++S      +TPT  N+   + QLSSCF+ TVPD L
Sbjct: 264 LGISMHLAMKEKENRLQYVKEFYDMMSLHQVTMATPTQSNARKPYHQLSSCFIDTVPDSL 323

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ ++ + A ++KY GG+G  +  VR  G  I G  G S GVI +++V NDTAVAV+Q
Sbjct: 324 DGIYQSISKFADVSKYGGGMGMYFGKVRSRGGKIRGFEGASGGVIRWIRVVNDTAVAVDQ 383

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498
            G R+GAV  YL+ WH D+ EFL L+ N GDDR + HD+  A   PDLF K+V +  N  
Sbjct: 384 LGMRQGAVAVYLDAWHKDLPEFLQLKTNNGDDRMKAHDVFPAVCYPDLFWKKVKEDLNQE 443

Query: 499 WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           W L  P ++       L D YG+E+E  YE+  R     +     K     L R +L   
Sbjct: 444 WYLMDPHDIFLVKGYCLEDFYGEEWETRYEDCVRDNRISKRVYVLK----DLVRLILKSA 499

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------- 596
            ETG P+  ++D  N  +P +H G+++ SNLCTEI  N    E                 
Sbjct: 500 VETGTPFAFYRDTVNRMNPNKHKGIIYCSNLCTEIAQNMKEAEICERKVVTKDGDEVIVS 559

Query: 597 ------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                   VCNL S+ L      NQ    +L    +T VR LDNVID+N + + +A+ +N
Sbjct: 560 TVKPGDFVVCNLASLCLGNIPVENQP---ELERITKTVVRALDNVIDLNFYPVAEAEITN 616

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +RAIGLG+ G+   L   HI + S E ++  D+  E I++ AI AS ELA+ERGAYS+
Sbjct: 617 KRYRAIGLGVSGYHHMLAKHHIAWESQEHLDFVDKVFENINYAAIKASSELAKERGAYSA 676

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F GS W+ G              +  +    +   W+ LK+ V   G+RN+  +A APT+
Sbjct: 677 FAGSEWESG--------------EYFSRRNYNSPRWESLKQEVHE-GIRNAWILATAPTS 721

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + + G S  +DP     +++         V                            
Sbjct: 722 STSILIGTSAGLDPIMNRFFLEEKKGAILPRVAP-------------------------- 755

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 +  D    + +A ++D  W + +A  RQ+ IDQAQS N ++ +E    +L  +Y
Sbjct: 756 -----ELSMDTYWYYKSAHQMDQTWSVRAAGLRQRHIDQAQSFNFWITNEYKMSELLNLY 810

Query: 890 RQAWLMGLKTTYYLRSRS 907
             AW  G+KT YY+RS++
Sbjct: 811 TLAWECGVKTIYYVRSKA 828


>gi|157414345|ref|YP_001481601.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|218561717|ref|YP_002343496.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|112359423|emb|CAL34205.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|157385309|gb|ABV51624.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|315930489|gb|EFV09541.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 305]
 gi|315931282|gb|EFV10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 789

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFQKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|307746986|gb|ADN90256.1| Ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 789

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFQKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|121613048|ref|YP_999744.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167004719|ref|ZP_02270477.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249021|gb|EAQ71983.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 789

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFQKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|284925327|gb|ADC27679.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter
           jejuni subsp. jejuni IA3902]
          Length = 789

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|317009306|gb|ADU79886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori India7]
          Length = 788

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 299/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|15611688|ref|NP_223339.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori J99]
 gi|7388069|sp|Q9ZLF9|RIR1_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|4155174|gb|AAD06201.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
           pylori J99]
          Length = 788

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 300/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N   IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|57236936|ref|YP_178051.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           jejuni RM1221]
 gi|148926840|ref|ZP_01810519.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|57165740|gb|AAW34519.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni RM1221]
 gi|145844565|gb|EDK21672.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315057465|gb|ADT71794.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 789

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|317181991|dbj|BAJ59775.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori F57]
          Length = 788

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 298/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ L+DRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLHDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLFMKRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 NNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +GVFPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +    + +A++I+   LI++A+ RQKWIDQ
Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDINAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|86153989|ref|ZP_01072191.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842527|gb|EAQ59740.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 789

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDNIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|317012491|gb|ADU83099.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori Lithuania75]
          Length = 788

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L + +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYADGTIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 SNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786


>gi|188996382|ref|YP_001930633.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931449|gb|ACD66079.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 850

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 284/871 (32%), Positives = 431/871 (49%), Gaps = 92/871 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202
           ++  DGT   F  K+L   +     GL       ++ +  K +     + ++  +L+  +
Sbjct: 9   VVKRDGTQEKFQMKKLVDAIFALLEGLDLPDDYEIVFKITKELDLKIPEVVTTEELDYLV 68

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI     Y  +  R LL+ + R +                       F  YI  
Sbjct: 69  LKAIEHLIPTGSIYDTIATRQLLKIINRRIERRFS-----------------SFKDYINY 111

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
            V  +LL   +++FD+  L + + Y RD   +Y GL  L DRY         IE PQ FF
Sbjct: 112 AVNEKLLKPELLNFDIDLLESKIDYSRDNNLDYFGLSTLKDRYLTKDRNFETIEKPQWFF 171

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAMG+   E E     ++ Y+ LS+  ++ STPTLFNSGT   Q SSC++  V D L 
Sbjct: 172 MRVAMGIGNTEEE----ILKIYDKLSNLEYLHSTPTLFNSGTLTNQYSSCYVNVVDDSLE 227

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E A LAKY+GG+G D T +R  G+ IH  N KS G+IPF+K+ +    A+ QG
Sbjct: 228 SIMDKAKETAFLAKYAGGVGTDITRIRATGSKIHSLNAKSSGIIPFIKIFDTIVNAIQQG 287

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD  M+R+ +     L
Sbjct: 288 GRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDEIMRRIKEGEPIYL 347

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  +L   YG+EF   Y+    +A+RGE+++++KI +   ++K L  L +TGHPW+
Sbjct: 348 FDPAECRELVTSYGEEFAKKYQECIEKAERGELELWKKIDSRDFYKKYLFKLAKTGHPWL 407

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------- 613
           TFKD  N  +P     V++SSNLCTEI++ +S + TAVC L S+NL  H           
Sbjct: 408 TFKDAHNRHNPCPKYSVINSSNLCTEISIPNSPQSTAVCTLASVNLARHLKKVERETSDV 467

Query: 614 ---------------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                                +  D+DKL  T+ T V  LDN++D N +  E+++K+   
Sbjct: 468 KREELSPNEKNTSHLLTYSPTHSIDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMD 527

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IG+GLMGF  AL  L IPY S EA+E+A E  +F+       S ELA+ERGA+  + 
Sbjct: 528 LRPIGIGLMGFHEALIYLGIPYDSDEAIELAKEIAKFMRETVYRKSEELAKERGAFPHYY 587

Query: 713 G-SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             S  +      + +    +    L     +       +        RN+  +AIAPTA+
Sbjct: 588 EVSKRESEKVKSEELNPNEKTPTHLLTYSPTHPYNYPPR--------RNAVLLAIAPTAS 639

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I G S SID  + N++ +  +SG F VVN  L+  L+++ +W+E M+  +K + GSI
Sbjct: 640 ISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEMLEKIKANQGSI 699

Query: 832 GNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
             I+ +   + K++  TA+E+ P   I+ A+  Q++IDQA S +LY++E     ++ IY 
Sbjct: 700 QYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDMENIYM 759

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVD-----------------------GKLNAVP 927
            AW  GLK+TYY         EK T+                            ++    
Sbjct: 760 YAWEKGLKSTYYCFIDKTIKGEKYTMNVNKRGERRGFGLARAKDQVNKDLEELERMAREK 819

Query: 928 VTDPNSSTHSLGIPSSCTSDT----ECEVCQ 954
             D        G   +C +D      C  C+
Sbjct: 820 YGDEIVDKVKAGNVDACPTDPLLAKICPSCE 850


>gi|268678696|ref|YP_003303127.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616727|gb|ACZ11092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 788

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 283/820 (34%), Positives = 417/820 (50%), Gaps = 106/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +G +   +  +++     A  GL +VS   +  +      D ++  +++  LI
Sbjct: 1   MLTVQKRNGRIEPLDISKIQKYTSSAIKGLDNVSQSELEVDAKIQFRDKITTEEIQKTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L  +V                       F  Y E 
Sbjct: 61  KTAVDKIDIDRPNWTFVAARLFLYDLYHKVSGFTGYGS---------------FKEYFER 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             K   +   + + +DL  L   ++ ERD  F YLG++ L+DRY +    G  IE+PQ  
Sbjct: 106 CEKEGRIALGLKEKYDLADLEAYIQPERDLQFNYLGIKTLHDRYLIKNKEGKPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM ++M LA  E   +  A +FY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMAISMFLAQNELNSQDWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E ++L+K+ GG+G DW  VR +G  I G    + GVIPFLK+ ND AVAV+Q
Sbjct: 226 EGIFDSYKEMSLLSKFGGGIGWDWNLVRSMGGMIDGHKNAAGGVIPFLKITNDIAVAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH+D+ +FLDL+KN+G++RRR H++  A WI DLFMKRV  NA WT
Sbjct: 286 LGTRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHELFPALWINDLFMKRVESNAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P +  DL ++YG+EFE  Y  YE      E      I A  LW+K+LT  FE+G P+
Sbjct: 346 LFDPAQTPDLCEVYGEEFERRYSAYE----HDESVTKEYILAKELWKKILTSYFESGSPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601
           + FKD  N  +P  H G++ SSNLCTEI  N+      +                     
Sbjct: 402 LCFKDSANKVNPNDHAGIIRSSNLCTEIFQNTQPNHYKIKIVFNDQTFITYEERDLVKVD 461

Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +  A+
Sbjct: 462 SGITKEAKKITALDSIDGKDIFIVEKEMIEGKTAVCNLASVNLSKIHTKEDIERVLPIAI 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N   RA+GLG+MG    L    I + S E     DE ME 
Sbjct: 522 RMLDNVIDLNFYPHAKVKHTNLKSRAVGLGVMGEAQMLAEKGIEWGSYEHFSKIDEVMEA 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS++AI AS  LA E+G Y  F GS W +G+FPID+    A+   +          W+ L
Sbjct: 582 ISYNAILASSNLAIEKGVYPEFSGSKWSKGIFPIDTANEEAKKLVDRGGLFGYMYDWESL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 642 REKVKNNGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGMIPVVAPNL--- 698

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
               + W                            +  A+E+D   L+++ + RQKWIDQ
Sbjct: 699 --NPNTWT--------------------------FYTPAYELDQRILVKAGAIRQKWIDQ 730

Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QSLN+++   + SGK L+ IY  AW +G+K+TYYLRS+S
Sbjct: 731 GQSLNIFITLDKASGKYLNDIYMLAWKLGIKSTYYLRSQS 770


>gi|296271634|ref|YP_003654265.1| ribonucleoside-diphosphate reductase subunit alpha [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095809|gb|ADG91759.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcobacter
           nitrofigilis DSM 7299]
          Length = 794

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 288/820 (35%), Positives = 430/820 (52%), Gaps = 101/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L I   +G     +  +++ +   A  GL+ VS   +  +      DG+S SD++ ALI
Sbjct: 2   ALMIQKRNGRKEVLDITKIQKMSIAATEGLEGVSQSELELDAQIKFIDGMSSSDIQDALI 61

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  +  L   V  T      +A  H            YI+ 
Sbjct: 62  KTAIEKIDIDVPNWTFVAARLFIFNLYHRVGRTTNSVKGEAYSH---------MSDYIKT 112

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320
              A  +   +   +DL  L N LK ERD  F YLG++ LYDRY +       IE+PQ  
Sbjct: 113 AQDAGRMIPGLERGYDLEDLNNYLKPERDLQFNYLGIKTLYDRYLIKDKNSDPIELPQHM 172

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E +K+ RA EFY+++S F  M +TPTL N+ T   QLSSC++ + PD++
Sbjct: 173 FMGIAMFLAQDEDDKQARAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF   +E A+L+KY GG+G DW  +R LG  I G    + G +PFLK+ ND A+AV+Q
Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRALGGAIDGHKSAAGGTVPFLKITNDIAIAVDQ 292

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WH+D+ +FLDL+KN+G++RRR HD+  + WI DLFM+R+ +++ WT
Sbjct: 293 LGTRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHDLFPSLWICDLFMQRIMEDSHWT 352

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P++V DL +L+G  FE  Y  YE         V  +I A  LW+K+LT  FE+G P+
Sbjct: 353 LFDPNDVKDLSELHGDAFEKRYIEYE----NDNSIVKDRIKAKDLWKKILTSYFESGSPF 408

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601
           + FKD  N  +P  HVG + SSNLCTEI  N++  +  +                     
Sbjct: 409 LCFKDNANRANPNAHVGHIRSSNLCTEIFQNTNPNKYKIKLEFDDGSIELYDEDDTIKVD 468

Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   + TA+
Sbjct: 469 SGIIKKANKVTALDSVGGKKIFIVEKEKTDGDTAVCNLASVNLSKIHTKEDIERVVPTAI 528

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N + + K K +N   R+IGLG+MG    L    + + S + ++  D+ ME 
Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAQMLAEEKLVWGSVDHLKKIDKVMEA 588

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS++AI +S ELA E+G Y +F GS W +G+ P D          E  +   +   WD L
Sbjct: 589 ISYNAIKSSAELAVEKGKYPTFDGSNWSKGIMPHDHAPQAVNALVEKDL-FDTGYDWDAL 647

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           + +VK  GMRN   MA+APT++I+ + G +Q+I+P Y+  + + N+SG   VV       
Sbjct: 648 RAQVKKDGMRNGYLMAVAPTSSISILVGTTQAIEPVYKRKWYEENLSGLIPVV------- 700

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   + ++  +    +  A+E+D + +I++A+ RQKWIDQ
Sbjct: 701 ------------------------VPKLSPETWSYYTPAYEVDQLDIIKAAAVRQKWIDQ 736

Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            QS N++L   + SGK +  IY  AW +GLK+TYYLRS+S
Sbjct: 737 GQSTNIFLSLDKASGKYMHQIYTLAWQLGLKSTYYLRSQS 776


>gi|237751458|ref|ZP_04581938.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           bilis ATCC 43879]
 gi|229372824|gb|EEO23215.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           bilis ATCC 43879]
          Length = 785

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 284/817 (34%), Positives = 424/817 (51%), Gaps = 108/817 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++  +G++   +  +++     A  GL   S   +  +     YDG++   ++  LI ++
Sbjct: 6   VIKRNGSMEELDITKIQKHTSSAVEGLSGTSQSELEVDAKLQFYDGITTERIQDTLIKTA 65

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I+   PN+  V AR  L  L   V                   Y      +     +
Sbjct: 66  VDKIDVASPNWTFVAARLFLYDLYHRVSRFTG--------------YRHLREYFEVGERE 111

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRV 324
            +LL      FDL  L + +  +RD  F YLG++ LYDRY L   NG  IE+PQ  FM +
Sbjct: 112 GKLLKGLKEKFDLDLLDSKIVADRDLQFNYLGIKTLYDRYLLKDSNGKPIELPQHMFMAI 171

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AM LA  E +  + A++FY+ LS+F  MC+TPTL N+ T   QLSSC++ + PD++ GIF
Sbjct: 172 AMFLAQNEKDCNEWAIKFYDALSNFEVMCATPTLSNARTTRHQLSSCYIGSTPDNIEGIF 231

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            + +E A+L+KY GG+G D++ VR +G+ I G    + G+IPFLK+ ND A+AV+Q G R
Sbjct: 232 DSYKEMALLSKYGGGIGWDFSQVRTIGSFIDGHKNAAGGIIPFLKITNDIAIAVDQLGTR 291

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA+  Y+E WH DV EF++LRKN+G++RRRTHD+  A WI DLFM+RV Q++ W+ F P
Sbjct: 292 KGAIATYIEIWHNDVTEFIELRKNSGEERRRTHDLFPALWICDLFMERVLQDSQWSFFDP 351

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +L +LYG EF+  YE  E+  +     V   + A  LW+K+L   FETG P++ FK
Sbjct: 352 YTCRELTNLYGDEFKKRYEELEKMPNM----VVSSMPAKDLWKKILNSYFETGLPFLCFK 407

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC------------------------ 600
           D  N  +P  H G++ SSNLCTEI  N+      V                         
Sbjct: 408 DSANRANPNAHSGIIRSSNLCTEIFQNTEPSHYRVEVEFDDGERIYFEESEEVVVDSGVT 467

Query: 601 ---------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                                           NL +   +    ++ +   +  AVR+LD
Sbjct: 468 KRANKLTSIDSLKGKKIFNTQRVQTGGQTAVCNLASINLSKIHTHEDIERIVPIAVRMLD 527

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID+N +   K K +N  +RAIGLG+MG    L    + + S     + D  ME IS++
Sbjct: 528 NVIDLNFYPSRKVKVTNMANRAIGLGVMGEAELLASKLVLWGSEAHFSLIDSIMEAISYN 587

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           AI AS  LA+ERGAY +++GS W +G+FPID     A  + +  + R     W+ L+  V
Sbjct: 588 AIKASAMLAKERGAYPTYEGSNWSKGIFPID----KANEKAKAIVERIFHYDWESLRDLV 643

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K+ G+RN   MAIAPT++I+ + G +Q+I+P Y+ ++ + N+SG    V           
Sbjct: 644 KSEGIRNGYLMAIAPTSSISILVGTTQTIEPIYKQIWHEENLSGMIKSV----------- 692

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                               +  +  +    + +A+ I+   L+ +A+ RQKWIDQ QSL
Sbjct: 693 --------------------VPNLTLETINFYPSAYSINQHDLVRAAAVRQKWIDQGQSL 732

Query: 874 NLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           N++  LD  SGK+L  IY  AW +GLK+TYYLRS+S 
Sbjct: 733 NIFIRLDSVSGKQLHEIYMLAWSLGLKSTYYLRSQSK 769


>gi|222823071|ref|YP_002574644.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           lari RM2100]
 gi|222538292|gb|ACM63393.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           lari RM2100]
          Length = 791

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 293/867 (33%), Positives = 439/867 (50%), Gaps = 133/867 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A + L +VS   +  +      DG+S  +++  LI 
Sbjct: 1   MKVLKRNGRTEELDVSKIKKYTTDAVANLDNVSQSELEVDAKIQFRDGISTEEIQQTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                     ++   Y+E+G
Sbjct: 61  TAVDKIDIDRPNWTFVAARLFLYDLYKKVSGFTG---------------YKHLREYLEKG 105

Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321
            K   +   + + +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  F
Sbjct: 106 EKEGRILIGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E + +  A +FY+L+S+F  M +TPTL N+ T   QLSSC++ +  D++ 
Sbjct: 166 MAIAMFLAQNELDSQTWAKKFYDLISTFEVMLATPTLSNARTTRHQLSSCYIGSTSDNIE 225

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q 
Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  Y+E WH+D+ +FLDLRKN+G++RRR H++  A WI DLFMKRV  N  WTL
Sbjct: 286 GTRKGAIAVYIEPWHMDINDFLDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P + + L DLYG+EFE  YE +E+     E  V   + A  LW+K+L   FE+G P++
Sbjct: 346 FDPADTASLCDLYGQEFEKRYEEFEKD----ESIVKEIVDAKELWKKILLSYFESGLPFL 401

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+      +                      
Sbjct: 402 CFKDSANKTNPNSHAGIIRSSNLCTEIFQNTEPNYYQIKITFDDKTELHLDEDEELTIDG 461

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   + TA+R
Sbjct: 462 GYKKLAKKVSTLDSINGKKVYIVEKYKNEGKTAVCNLASINLSKINTKEDIQRVVPTAIR 521

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E  E  D  ME I
Sbjct: 522 MLDNVIDLNFYPHVKVKNTNLKSRAIGLGVMGEAQMLAEAQIYWGSNEHFEKIDRIMEMI 581

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDEL 749
           S+ AI AS  LA E+G+Y  F+GS W +G+ PID     A+       +   S   W++L
Sbjct: 582 SYEAILASSNLALEKGSYPDFEGSNWSKGIVPIDVANENAKKLTASEGLFDQSECDWEKL 641

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           ++++K  G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG    V       
Sbjct: 642 REKLKRDGIRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPTV------- 694

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                   +  +  +  + +  A+E+D   L+++A+ R KWIDQ
Sbjct: 695 ------------------------VPNLSANTWQYYTPAYELDQKILVKAAAIRGKWIDQ 730

Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            QSLN++  LD+ SG  L+ IY+ AW +G+K+TYYLRS S              K+N   
Sbjct: 731 GQSLNIFVSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSQKVNDDV 780

Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           V                    ECE CQ
Sbjct: 781 VDRTI----------------ECEGCQ 791


>gi|86150529|ref|ZP_01068753.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86152387|ref|ZP_01070597.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|205355764|ref|ZP_03222534.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|315123636|ref|YP_004065640.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85838981|gb|EAQ56246.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85840684|gb|EAQ57936.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|205346541|gb|EDZ33174.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|315017358|gb|ADT65451.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
          Length = 789

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 297/866 (34%), Positives = 438/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L ++V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L + +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  F+GS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV        
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  D  + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|283953643|ref|ZP_06371174.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794684|gb|EFC33422.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 789

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 299/866 (34%), Positives = 436/866 (50%), Gaps = 133/866 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVTKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I+ + PN+  V AR  L  L + V                   Y      + +  
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFLFDLYKRVNGM--------------NRYNHLREYFQKGE 106

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322
            + R+L      +DL  L   +K ERD  F YLG++ LYDRY +    G  IE+PQ  FM
Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QLSSC++ + PD++ G
Sbjct: 167 AIAMFLAQNEFNSQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF + QE ++L+K+ GG+G DW+ VR +G  I G    + G+IPFLK+ ND AVAV+Q G
Sbjct: 227 IFDSYQEMSLLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DLFMKRV  N  WTLF
Sbjct: 287 TRKGAIAVYIEPWHMDIGDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P + +DL DLYG+ FE  YE YE+     E      + A  LW+K+L   FETG P++ 
Sbjct: 347 DPADTADLCDLYGEAFEKRYEKYEKD----ESITKEIVEAKDLWKKILLNYFETGLPFLC 402

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601
           FKD  N  +P  HVG++ SSNLCTEI  N+      +                       
Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDEVHFDEDQKVMIDGG 462

Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631
                                             NL +   +  +  + +   + TA+R+
Sbjct: 463 YEKPAKKISTLDSINGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N +   K K +N   RAIGLG+MG    L    I + S E +   DE ME IS
Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAETKIHWGSDEHLNKIDEIMEQIS 582

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750
           F AI+AS  LA E+G+Y  FKGS W +G+FPID     A+       +   S   W +L+
Sbjct: 583 FEAINASSNLALEKGSYEDFKGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWAKLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              D W                          + +  A+E+D   L+++A+ R KWIDQ 
Sbjct: 699 -SLDTW--------------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S              K+N    
Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVTDR 781

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +                   ECE CQ
Sbjct: 782 SI------------------ECEGCQ 789


>gi|210134885|ref|YP_002301324.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori P12]
 gi|210132853|gb|ACJ07844.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter
           pylori P12]
          Length = 788

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 298/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +++  LI
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN++ V +R  L  L  +V                      +   Y E 
Sbjct: 61  KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105

Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
             +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE+PQ  
Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ + PD++
Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A+AV+Q
Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV ++A WT
Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE G P+
Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600
           + FKD  N  +P  H G++ SSNLCTEI  N++     +                     
Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461

Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
                                               NL +   +     + +   +   V
Sbjct: 462 DNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D  ME 
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           IS+HAI  S  LA+E+G Y  F+ S W +G+FPID     A    E  +   +   W  L
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +++VK+ GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L   
Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                  +    +                      + +A++ID   LI++A+ RQKWIDQ
Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729

Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  +KS L       N
Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDKKSVLDRSVECFN 786


>gi|152993944|ref|YP_001359665.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp.
           NBC37-1]
 gi|151425805|dbj|BAF73308.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurovum sp.
           NBC37-1]
          Length = 789

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 292/819 (35%), Positives = 435/819 (53%), Gaps = 103/819 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++++  +G + + +  +++     A  GL DVS   +  +      D ++  +++T LI
Sbjct: 1   MVRVVKRNGRVETLDVSKIQKYTSAAVEGLDDVSQSELEVDAKLQFRDMITSEEIQTTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  +  +                    Y      +   
Sbjct: 61  KTAVDKIDIDRPNWTFVAARLFLYDIYHKATGFTG--------------YNHLREYFERG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
             + R++      +DL  L + +K ERD  F YLGL+ LYDRY L   NG  IE+PQ  F
Sbjct: 107 EKEGRIVLGLKDKYDLDDLNDYIKPERDLQFNYLGLRTLYDRYLLKDRNGVPIELPQQLF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M VAM LA  E + +  A +FY++LS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MGVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF   +E A+L+K+ GG+G DWT VRG+G++I G    + G++PFLK+AND A+AV+Q 
Sbjct: 227 GIFDGYKEMALLSKFGGGIGWDWTLVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH+DV +FLDL+KN+G++RRR HD+  A W+ DLFMKRV ++A WTL
Sbjct: 287 GTRKGAIAVYLEPWHVDVRDFLDLKKNSGEERRRAHDLFPALWLNDLFMKRVEEDATWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P EV++L +LYG+EFE  Y   E             ISA  LW+++L   FETG+P++
Sbjct: 347 FDPFEVTELTELYGEEFEKRYVELEHSDAD---ITREVISAKGLWKEILRSYFETGNPFL 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------------- 595
           TFKD  N  +P +HVG++ SSNLCTEI  N++                            
Sbjct: 404 TFKDAANRANPNKHVGIIRSSNLCTEIFQNTAPNTYKTRFTFTDGSIESYDENEMLTVDN 463

Query: 596 -------------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                    E    +    NL +   +     + +A  + TAVR
Sbjct: 464 GTTKPAKKVTALDSLGGKQIWIVDKEKIDGDTAVCNLASINLSKIHTKEDIARVVPTAVR 523

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N + + K K++N   R+IGLG+MG    L    I + S +     DE ME +
Sbjct: 524 MLDNVIDLNFYPLAKVKRTNEKSRSIGLGVMGEAQMLAENQIAWGSHDHFTKIDEVMESV 583

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI AS  LA E+G Y +F GS W +G+FPID     A    +          W  L+
Sbjct: 584 SYYAIEASSNLALEKGKYPTFDGSDWSKGIFPIDKANENACKLVDRGGLFGYSHDWTALR 643

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VKT GMRN   MA+APT++I+ + G +Q+I+P Y+  + + N+SG   V         
Sbjct: 644 EKVKTDGMRNGYLMAVAPTSSISILTGTTQAIEPVYKRKWFEENLSGLIPVTAP------ 697

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                    ++  D  + +  A+++D   LI++ + RQKWIDQ 
Sbjct: 698 -------------------------KLSPDTWQYYTPAYDLDQNVLIKAGAIRQKWIDQG 732

Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QSLN+++   + SGK L+ IY  AW  GLK+TYYLRS+S
Sbjct: 733 QSLNIFITLDKASGKYLNEIYMNAWKFGLKSTYYLRSQS 771


>gi|224418360|ref|ZP_03656366.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           canadensis MIT 98-5491]
 gi|253827680|ref|ZP_04870565.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|313141891|ref|ZP_07804084.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
           98-5491]
 gi|253511086|gb|EES89745.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter
           canadensis MIT 98-5491]
 gi|313130922|gb|EFR48539.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT
           98-5491]
          Length = 790

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 295/866 (34%), Positives = 435/866 (50%), Gaps = 131/866 (15%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L ++  DG +   +  +++    ++  GL+ VS   +  +   +  D ++  +++  LI
Sbjct: 1   MLTVIKRDGRIEPLDVTKIQKYTRDSVVGLEGVSQSELEVDAKLHFRDKITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L   V      K  K      +             
Sbjct: 61  KTAVDKIDIDCPNWTFVAARLFLYDLYHRVNGFNGYKSLKEYLEIGEK------------ 108

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
             + R++      F+L  L   +  +RD  F YLG++ LYDRY L    G  IE+PQ  F
Sbjct: 109 --ENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGQPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A +FY+LLS F  M +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQNEKDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + +E A+L+KY GG+G D++ +RGLG+ I G    + GVIPFLK+ ND A+AV+Q 
Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH D+ +F+D++KN+G++RRR HD+  A WIPDLFMKRV ++  W L
Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRAHDLFPALWIPDLFMKRVAEDGLWNL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F     +DL +LYG+ FE  Y+ YE   D  +      I A  LW+++LT  FE G P++
Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYENNPDIPK----ETIKAKDLWKRILTSYFEVGSPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601
            FKD  N  +P  H G++ SSNLCTEI  N+   +  +                      
Sbjct: 403 CFKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIEDYEEYQEVKTDC 462

Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                              NL +   +     + +   +  A+R
Sbjct: 463 GIIKSSNKITSTDSINGKKVFIAQRESIDGKTAVCNLASINLSKINTKEDIERVVPVAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N +   K K +N   RAIGLG+MG    L    I + S + +E  DE ME I
Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIQWGSQKHLEKIDEIMEMI 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AISAS +LAQE+G Y+ F  S W +G+FPID     A+   +          WD L+
Sbjct: 583 SYNAISASCKLAQEKGVYNDFANSSWSKGIFPIDKANSEAKALVDRGGLFGFVYDWDSLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + VKT G+RN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              + W+                           + +A+EID   +I++A+ RQKWIDQ 
Sbjct: 699 -SLENWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731

Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           QS N++  LD+ SG+ L+ IY  AW +GLK+TYYLRS+S    E +T             
Sbjct: 732 QSTNIFISLDKASGRYLNDIYSLAWRLGLKSTYYLRSQS-VEAENTTSAIDRSI------ 784

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               ECE CQ
Sbjct: 785 --------------------ECEGCQ 790


>gi|315452682|ref|YP_004072952.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           felis ATCC 49179]
 gi|315131734|emb|CBY82362.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           felis ATCC 49179]
          Length = 788

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 293/819 (35%), Positives = 425/819 (51%), Gaps = 109/819 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  +G     N ++++  +  A  GL+ ++   +  E +    DG+   D++  LI
Sbjct: 6   EVRVIKRNGRTEPLNVEKIQKYIISATEGLEGINKDELELEAHF-FKDGIKTQDIQQTLI 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+   PN++ V AR  L  L  +V   +  K   A + E+          + E 
Sbjct: 65  KTAIDHIDVHAPNWSFVAARLFLFDLYHKVSGFMGYKH-LAEYFEVGEREGRIVRGFKE- 122

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321
                        FDL  L + L+ +RD  F YLG++ L+DRY L       IE+PQ  F
Sbjct: 123 ------------KFDLDRLNSALEPKRDLQFNYLGIKTLHDRYLLKDKQDRPIELPQHMF 170

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E++  ++A+ FY +LS F  MC+TPTL N+ T + QLSSC++ + PD++ 
Sbjct: 171 MAIAMFLAQNESDPNEKALAFYEVLSRFEVMCATPTLANARTPNHQLSSCYVGSTPDNIE 230

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF + ++ A+L+KY GG+G D++ VR LG++I G    S G IPFLK+ ND A+AV+Q 
Sbjct: 231 GIFDSYKDMALLSKYGGGIGWDFSQVRCLGSYIDGHKEASAGAIPFLKIVNDVAIAVDQL 290

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH DV EF+DLRKN+GD+RRR HD+  A WI DLFM+RV ++  WTL
Sbjct: 291 GTRKGAIAVYLEIWHKDVLEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEEDGMWTL 350

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P   SDL + YG  F   Y  YE      E  + ++I A  LW+K+LT  FE+G P++
Sbjct: 351 FDPYVCSDLTECYGDVFTQKYLAYE----NNENIIKQRIEARTLWKKILTNYFESGLPFL 406

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N      H G++ SSNLCTEI   + S    V                      
Sbjct: 407 GFKDNANNAHLNGHTGLIRSSNLCTEIYQMTGSSHYKVAVEFVDGSLEYYEEKDLITTDA 466

Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                          +   NL +   +       +A  +  AVR
Sbjct: 467 HITKKANKLTSNDSLKGKRIFMTTKIAQGGQVAVCNLASLNLSKVQSEADIARVVPIAVR 526

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDN+ID+N + I+KAK++N   RAIG G+MG   AL    I + S E     D  ME I
Sbjct: 527 MLDNIIDLNFYPIDKAKRTNLQSRAIGFGVMGEAQALAQARIEWGSVEHAHYIDALMEKI 586

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S+  I  S +LAQERG+Y+ F+ S W +G+FP+D     A               W  LK
Sbjct: 587 SYTTILESCKLAQERGSYAHFENSEWSRGIFPMDKAKSQAWEISPHK----PTCDWGGLK 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            +VK  G+RN   MAIAPT++I+ + G +Q+I+P YQ  + + N+SG   VV        
Sbjct: 643 AQVKQHGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVV-------- 694

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  +    + +A++IDP  +I  A+ RQKWIDQ 
Sbjct: 695 -----------------------VPELSLETWHYYTSAYDIDPKAIIRLAAVRQKWIDQG 731

Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QSLNL+L  D+ SGK L  IY  AW +GLK+TYYLR+ S
Sbjct: 732 QSLNLFLRPDQASGKLLHEIYHLAWKLGLKSTYYLRTAS 770


>gi|330984036|gb|EGH82139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 610

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 336/626 (53%), Positives = 427/626 (68%), Gaps = 21/626 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KRNG   +F+ + I+ A+ KAF A  G+ AS+S  ++++I ++ E     +       
Sbjct: 4   VVKRNGQPVAFNGALIAAALSKAFNATLGESASQSSHLREVIASIVEGVTNAVAGKPS-- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V +E IQD VE  LM        R Y+LYREER+ VR              +L    +
Sbjct: 62  --VDVETIQDLVERGLMAKDEAATARAYILYREERNKVRR-------PPEAPAQLYYTDE 112

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                  + + L   + +AC  L +VS+  + ++T KN + G+   D+  A++ ++R +I
Sbjct: 113 ADQTHPLSVELLTDYLAQACQDLPNVSASKLAADTLKNAFPGIKWGDVLKAMLITTRAMI 172

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           E+EP+Y+ V AR L  +L+ E    +               Y +     +E GVK   L+
Sbjct: 173 EQEPDYSFVNARLLWLELKNESRAVLGLGSD--------ATYADDLKAALEFGVKNDHLN 224

Query: 271 ESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
             ++D  FD+  L   L+ + D  F YLG Q LYDRYFLH NG + E PQ FFMRVAMGL
Sbjct: 225 PVLIDGTFDVDQLGRALREKGDMQFTYLGAQTLYDRYFLHSNGQKFERPQVFFMRVAMGL 284

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +L+E +  +RA+EFYNL SSF +M STPTLFN+GT   QLSSC+LTTVPDDL GI+ A+ 
Sbjct: 285 SLEEKKPTERAIEFYNLFSSFDYMASTPTLFNAGTLRSQLSSCYLTTVPDDLSGIYHAIH 344

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV
Sbjct: 345 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 404

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
           CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV     WTLFSP +  
Sbjct: 405 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDKGQWTLFSPSDAP 464

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           DLHDL GK FE  Y  YE  AD GEIKV+++I+A  LWRKML+MLFETGHPW+TFKDPCN
Sbjct: 465 DLHDLVGKAFEERYTQYEAMADAGEIKVYKRIAAGDLWRKMLSMLFETGHPWLTFKDPCN 524

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL  H  + + D  KL  TI TA
Sbjct: 525 LRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLPNHIVDGKLDLAKLQKTINTA 584

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHR 654
           VR+LDNVIDIN +++ +A+ SN  HR
Sbjct: 585 VRILDNVIDINYYSVPQAENSNLKHR 610


>gi|145527768|ref|XP_001449684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417272|emb|CAK82287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 621

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/602 (37%), Positives = 353/602 (58%), Gaps = 20/602 (3%)

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +S  +F  +TPTLFNSGT +PQ+SSCFL  +  D + GI+  L+  A+++K +GG+G   
Sbjct: 1   MSQKYFTHATPTLFNSGTPYPQMSSCFLLDMVDDSIEGIYETLKRCALISKSAGGIGLSV 60

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463
           + +R   ++I GTNG S G++P LKV NDTA  V+QGG KRKG+   YLE WH D+  FL
Sbjct: 61  SKIRSQDSYIRGTNGISNGLVPMLKVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIISFL 120

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            LRKN G + +R  D+    WIPDLFM+RV  ++ WTL  P+E   L D YG+EF   Y 
Sbjct: 121 QLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYT 180

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           +YE +      +V   + A  LW++++     TG P++ +KD CN +S Q+++G + SSN
Sbjct: 181 DYESKNM---GRV--TMKARQLWQEIIDAQISTGLPYMLYKDACNSKSNQKNLGTIKSSN 235

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHT 642
           LCTEI   +S +E AVCNL SINL      ++ F++DKL    +     L+ VID+N + 
Sbjct: 236 LCTEIIQYTSPDEVAVCNLASINLQKLIKEDKTFNFDKLLEITKIITTNLNIVIDLNFYP 295

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++A+ SN  +R IG+G+ GF  AL  + IP+ S +A+E+  +  E I + A   S+ELA
Sbjct: 296 VQQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKIFETIYYGACERSLELA 355

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           Q+ G Y +F GS   QG+   D  G+  +              W+ LK+ +   GMRNS 
Sbjct: 356 QQLGPYETFAGSPASQGILQFDMWGVSPK-----------LYDWNTLKQNIVKYGMRNSL 404

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +A  PTA+ + I   ++S +P   N+Y +  ++G+F  +N  LV++L + +LW   + +
Sbjct: 405 LIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGEFVCINPHLVDDLIELNLWTPQIKN 464

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
            L  ++GS+ NI+ IP ++K+++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+ 
Sbjct: 465 KLIMNNGSVQNIDEIPTNIKQLYKTVWEISQKAILNLATSRAPFIDQSQSLNIHMAEPTM 524

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            K+  ++  AW  GLKT  YYLR+R A    K T+           +    S    +   
Sbjct: 525 SKVTSMHFYAWEKGLKTGMYYLRTRPAADPIKFTVDVEALLKEGGQIKIQQSKQELIDES 584

Query: 942 SS 943
           +S
Sbjct: 585 AS 586


>gi|219118138|ref|XP_002179850.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408903|gb|EEC48836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 926

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/841 (28%), Positives = 388/841 (46%), Gaps = 116/841 (13%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSE 195
                  L +   DG L   +S +L   + +   GL    ++   +     + MY  ++ 
Sbjct: 60  PKKHEDTLHVSKRDGRLELLDSTKLLQRLTDLSDGLDMRFLNLVALTESIVRGMYPNVTT 119

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +++     ++ +L  + P+Y ++ AR L+ +  +   T   +  +   +          
Sbjct: 120 HEIDVLAAETAASLGTQHPDYGRLAARILITQNHKTTPTCFSEAIETLYNSG-------- 171

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SR 313
              +I+  V        ++      + + + +ERD    Y G + L   Y L  +     
Sbjct: 172 -KGFIDHKV------GELVRRRGPEIDSRIVHERDLEMTYFGYKTLERAYLLKKDNGNQV 224

Query: 314 IEMPQAFFMRVAMGLAL-------KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
           +E PQ   MRVA+G+          E +  + A E Y+L+S   F  ++PTLF++GT HP
Sbjct: 225 LERPQYLMMRVALGIHCTSKMSSRSEDDCLEAAFETYDLMSRGFFTHASPTLFHAGTTHP 284

Query: 367 QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           QLSSCFL  +  D + GI+  L+  A+++K +GG+G     +R  G  I GT G S G++
Sbjct: 285 QLSSCFLVQMSEDSINGIYDTLKRCAVISKAAGGIGLSVHNIRARGTPIQGTRGVSNGLV 344

Query: 426 PFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           P L+V + T+  V+QGG KR GA   YLE WH D+ + L L+KN G + +R  D+    W
Sbjct: 345 PMLRVFDVTSRYVDQGGGKRPGAFAIYLEPWHADIFDVLSLKKNHGKEEQRARDLFYGLW 404

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           IPDLFMKRV ++  W+L  P +   L   YG +FE  Y++YE+     E K  R++ A  
Sbjct: 405 IPDLFMKRVEEDDVWSLMCPHQCPGLAHCYGAKFEALYQHYEQ-----EGKFVRQVRARE 459

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW  +L    ETG P++ +KD CN +S QQ++G +  SNLCTEI   S  EETAVCNL S
Sbjct: 460 LWGAILESQIETGTPYMLYKDTCNTKSNQQNIGTIQCSNLCTEIIQYSDQEETAVCNLAS 519

Query: 605 INLLAHFANN--------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           I L     +                FD++ L    +   R L+++ID+N + ++ AK SN
Sbjct: 520 ICLPRFVVSERGTFGSISPESGSAFFDHEALHRAAKIVTRNLNSIIDVNSYPVDGAKTSN 579

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HR IG+G+ G   A   L +P+ S  A ++ +   E I   A+ AS ELA++ G Y +
Sbjct: 580 FKHRPIGIGVSGLADAFLRLGLPFTSAAAKKLNEAIFETIYHAALEASAELAEKEGPYET 639

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRD----------------ELAMNRTSRLPWDELKKRVK 754
           F GS   QG    +  GL  +                       +      W+ L++R+ 
Sbjct: 640 FAGSPASQGKLQFNLWGLSDDETPSHKYALAKETPVPIQMYPNSSNVCGYDWESLRRRIV 699

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+RNS   A     + +                                 V+ L  + 
Sbjct: 700 KTGLRNSLSWA-----STS---------------------------------VSSLSAQT 721

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ M        GS+ NI  IPD LK+++ T +EI    +I+  + R K+IDQ     
Sbjct: 722 FRNQMMRD-----GGSVQNIPDIPDRLKELYKTVWEIKMKDIIDMGADRGKFIDQ----- 771

Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
                P+  KL  ++  AW  GLKT  YYLR++ A +  + T++ +   +    + +   
Sbjct: 772 ----NPNMDKLTAMHFYAWKKGLKTGMYYLRTKPAVNAIQYTVEKISPTVIVGGIPEAEP 827

Query: 934 S 934
            
Sbjct: 828 D 828


>gi|322510749|gb|ADX06063.1| putative ribonucleotide diphosphate reductase, large subunit
           [Organic Lake phycodnavirus 1]
          Length = 824

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/848 (25%), Positives = 377/848 (44%), Gaps = 91/848 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202
            + ++  +      +  ++   V +       ++    ++ +    ++D +  S ++  L
Sbjct: 1   MIHVLKRNSKKEVLSYDKILERVNKFIVKYNLNIQGSGLVLKVIDQLHDNIKTSQIDELL 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
                ++     +Y+K+     +    +E   T++                E       +
Sbjct: 61  AEQCASMGTIHYDYSKLAGYICISNHHKETKRTLF----------------ESVNILCTK 104

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                  + +++      L   + Y+R++  +Y G + L   Y +  +   IE  Q  +M
Sbjct: 105 KGYLSDNYYNIVKEHHKELETMIVYDRNYLIDYFGYKTLERAYLMRNDNMVIENIQHLWM 164

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RVA+ +         +  + Y+ LS   F+ +TPTL+N+GT  PQLSSC+L  +  D + 
Sbjct: 165 RVAVQIHGN---CLPKVKDTYDGLSKKLFIHATPTLYNAGTTRPQLSSCYLLGMEEDSID 221

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF  L++ A ++K++GG+G     VR  G  I GTNG S G++P L+V N+TA  V+QG
Sbjct: 222 GIFNTLRDCASISKWAGGIGLHIHNVRAKGTSILGTNGTSNGIVPMLRVFNNTARYVDQG 281

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KR G+   YLE WH D+ EFL+LRKN GD+  R  D+  A WIPDLFM+++  +  W 
Sbjct: 282 GGKRNGSFAMYLEPWHGDILEFLELRKNHGDEEMRARDLFYALWIPDLFMRKIEHDEDWY 341

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P     L ++YG+EFE  YE+Y         +  +K+ A  LW  +L    ETG P+
Sbjct: 342 LMCPHICKHLDNVYGEEFETLYESYV-----SSGQYLKKMKARELWFHILDSQMETGTPY 396

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-------- 612
           + +KD CN +S Q+++G + SSNLC EI   S  +E+AVCNL SI+L +           
Sbjct: 397 MLYKDACNQKSNQKNIGTIKSSNLCCEIIEYSDKDESAVCNLASISLSSFVKKSKFKLNG 456

Query: 613 ---------NNQFDY-DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                        DY      +I+      + V+D+      +    +         +  
Sbjct: 457 PIVVYAKENCKWCDYLKSFLDSIKI---NYEVVMDVRQTMYPQLYAGDKKIGGFSDVISL 513

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISA------------------------- 697
           F+S      +   +    E  +  ++   +                              
Sbjct: 514 FKSTFDYNGLHKITKMVTENLNRIIDVNYYPTDKTRQSNLKHRPIGIGVQGLADVFAMLN 573

Query: 698 ---SVELAQERGA---YSSFKGSLWDQGVFPIDSIGLLAEVRDEL-----------AMNR 740
                + A+E       + +  SL        +     A  +               +  
Sbjct: 574 IAFDSDEAKEINKMIFETMYHASLEKSMEMAKEQQTQYASFKGSPLSEGILQFDMWNVTP 633

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R  W  LK+ +   G  NS CMA  PTA+ + I   ++  +P   N+Y +  ++G+F 
Sbjct: 634 SKRYDWGALKQNIIKYGTMNSLCMAPMPTASTSQILSNNECFEPFTSNMYTRRTLAGEFM 693

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           V+N  L+ EL   ++W+ ++ +D+  + GSI +I  IPD +K  +   +E+    +++ +
Sbjct: 694 VINKHLMKELIDLNIWNMSIKNDILKYKGSIQSIAEIPDYIKAKYKIVWEMSMKTIMDMS 753

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
             R  +I Q+QS+NL+++EP+ K L  ++  AW  GLKT  YYLR ++    ++ T+   
Sbjct: 754 KDRGAYICQSQSMNLWVEEPNYKTLTNMHLYAWKCGLKTGMYYLRRKAKHHAQQFTVTPE 813

Query: 920 DGKLNAVP 927
                 V 
Sbjct: 814 KEPTECVS 821


>gi|269105097|ref|ZP_06157792.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160732|gb|EEZ39230.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 647

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 373/672 (55%), Gaps = 39/672 (5%)

Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228
              GL+ V    V       +YDG+  ++++  L  ++ +L  + P+YAK+ AR ++  L
Sbjct: 2   LADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSL 60

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
           ++E         + +    +   Y ++  +                  +   L + + Y+
Sbjct: 61  QKETSGYATATRELSEIGILSSAYVDFVAK------------------NQFALEDMIDYK 102

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           RD+ F+Y G + L   Y L + G  +E PQ  FMRVA+ +A  +    +   E Y+LLS 
Sbjct: 103 RDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDD---LEEIRELYDLLSL 159

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            ++  +TPTLFN+G +  QLSSCFL  +  D + GI+  L++ A+++K +GG+G     +
Sbjct: 160 CYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNI 219

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466
           R  GA I GTNG S G++P LKV N+TA  V+QGG KRKG+   YLE WH D+E FLDLR
Sbjct: 220 RATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLR 279

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KN G +  R  D+  A W+PDLFM+RV  +A WTLFSP     L DLYG EF   Y+ YE
Sbjct: 280 KNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYE 339

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R          + I A  L  +++    ETG P++ +KD CN +S Q+++G + SSNLC 
Sbjct: 340 RMGL-----GVKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCA 394

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           EI   S+ +ETA CNL S+ L     N  FD+DKL    + A++ LD VID+N H  +K 
Sbjct: 395 EIMEVSTPDETAACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKI 454

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +KSNH HR +GLG+ G       +H+P+ S EA+ +  +  E +   ++ AS E+A+++G
Sbjct: 455 EKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKG 514

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            YSS+ GS    G F  D                +SR  W +LK ++   G+RNS  +A 
Sbjct: 515 TYSSYDGSPISHGQFQFDLWCEQP----------SSRWDWSQLKHQIAEHGVRNSLLIAQ 564

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ A I G +++ +    N+Y +  +SG+F ++N +LV++L+QR LW   +   +  
Sbjct: 565 MPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIIL 624

Query: 827 HDGSIGNIERIP 838
           ++GS+  I+ IP
Sbjct: 625 NNGSVQGIDAIP 636


>gi|212697416|ref|ZP_03305544.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675608|gb|EEB35215.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 805

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 264/869 (30%), Positives = 412/869 (47%), Gaps = 110/869 (12%)

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             ++      + +      +V +E+IQD VE  L+++ ++K  + Y+LYR + +  R   
Sbjct: 2   DKISLNIENTIKERYPKDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVL 61

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +  +S       L I+ D      ++++R              + S  +  E++      
Sbjct: 62  TDFESYIDDDYTLSIIKD--INEEYDNQR------------YPIESLYLKFESFTK--AN 105

Query: 193 LSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +++  L  ALI ++  L  KE P++  + ARF++  +  ++  +  K        ++Q L
Sbjct: 106 MTKEALLNALIKAASELTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL 165

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
                      G+    + ES  + DL  L   LK ER+  F Y GL ++  RY +    
Sbjct: 166 TS--------VGLYGAYILESYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFE 217

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           G  IE  Q  FM ++M LA+ E ++   A + Y++LS      +TPT+ N+     QLSS
Sbjct: 218 GEYIESVQEMFMGISMHLAIGEKDRVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSS 277

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G    + GVI ++K+
Sbjct: 278 CFIDTVPDTLKGIYRSITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKL 337

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A  +PDLF 
Sbjct: 338 ANDTAVAVDQLGVRQGAVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFW 397

Query: 491 KRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           K    N    W +F P EV       + D YG+EFE  Y    +  +  +    R I+  
Sbjct: 398 KECRDNIGGDWYMFDPHEVLVKYGKSIEDTYGEEFEEFYHKLVKDKEISK----RVIAIK 453

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------- 596
            L R ++    ETG P++  +D  N  +P +H G+++SSNLCTEI  N S  E       
Sbjct: 454 DLIRLLIKSWTETGTPFVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIK 513

Query: 597 ----------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
                              CNL S+ L     N   D ++L   + T VR LDNVID+N 
Sbjct: 514 TVDGETVIVNTTKPGDFVECNLASLTLGNIDVN---DKEELEEVVSTIVRALDNVIDLNY 570

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASV 699
           +    AK +N  +RAIGLG  G+   L    I ++  E  +E  D   E I++ AI AS 
Sbjct: 571 YPTPYAKVTNKKYRAIGLGTSGYHHMLVKNDIKWSEEEAHLEFVDRVYEDINYFAIKASN 630

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           E+A+E+G+YS F+GS WD G              +           W++LK +V   G+R
Sbjct: 631 EIAKEKGSYSCFEGSDWDNG--------------NYFKQRGYESQRWEKLKDQVHKNGLR 676

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   +AIAPT + + I G S  +DP     +++         V            L  + 
Sbjct: 677 NGYLLAIAPTGSTSIISGTSAGVDPIMNKYFLEEKKGAIVPRVAP---------GLNTKT 727

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A+ ID    + +   RQ+ IDQAQS+N+Y+  
Sbjct: 728 FW----------------------LYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITT 765

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           E + +++  IY  AW  G+K+ YY+R +S
Sbjct: 766 EYTMRQILNIYLTAWEAGVKSLYYVRGKS 794


>gi|304439120|ref|ZP_07399039.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372479|gb|EFM26066.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 840

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 271/922 (29%), Positives = 422/922 (45%), Gaps = 126/922 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + + KR+G V  FD  KIS AI K+++ +              I  +T++ V ++     
Sbjct: 1   MNIRKRDGRVVDFDREKISTAIKKSYIGIMKPFEDS------YIDKITDKIVEKVED-LY 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145
              I  +E IQD VE  L++     + + Y+ YR   S  R      +    D  +   +
Sbjct: 54  KDTIPTVEQIQDLVELELIEEKEIDVVKSYITYRAAHSKDRQVLRGFNEYLEDDTLVSII 113

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           + + +D +   +  + L       C                      +S+ D    LI +
Sbjct: 114 RDVRNDYSRDLYPIESLFHKFSSFCK-------------------KDMSQDDSRVMLIRA 154

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L  KE P++  + +RF    L  ++                   + E      E  +
Sbjct: 155 ASELTTKEAPDWEYIASRFYRYDLELKINENYKGIDT----------FYEKIKNLTEMNL 204

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMR 323
             + + E+    D+  L  ++  ERD    Y  + +L  RY +  +    +E PQ  FM 
Sbjct: 205 YGKYILENYTKEDIDKLEKEIVPERDKLLTYSSIDLLAKRYLIRSHDMKVLERPQEMFMG 264

Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           +AM LAL E   K + A   Y +LS      +TPT+ N+     QLSSCF+ TV D L G
Sbjct: 265 IAMHLALPEGKNKVEWATRIYTVLSKLQVTVATPTMNNARKPFYQLSSCFIDTVSDTLEG 324

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +L++ NDTAVAV+Q G
Sbjct: 325 IYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWLRLVNDTAVAVDQLG 384

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWT 500
            R+G+   YL+ WH D+ EFL +R N GDDR + HD+  A   PDLF +    N  A W 
Sbjct: 385 VRQGSCAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVSYPDLFFRLAKNNIDADWY 444

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +F P E+       L D YG EFE  Y      A+  +    R IS   + R ++  L E
Sbjct: 445 MFDPHEIMVKKGYCLEDYYGDEFEKKYYECVHDANISK----RVISVKDMVRLIIKSLTE 500

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+  F+D  N  +P +H G+++SSNLCTEI  N S+ E                   
Sbjct: 501 TGTPFAFFRDAVNKMNPNKHKGMIYSSNLCTEIMQNMSAIEAVSQEIETEEGDTVVVTKT 560

Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 VCNL S+ +      N  D +++   + TAVR LDNVID+N + +  AK +N  
Sbjct: 561 KPGDFVVCNLASLVISNI---NLEDDEEVEYVVSTAVRGLDNVIDLNYYPLPYAKITNSK 617

Query: 653 HRAIGLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
           +RAIGLG  G+  AL    I +    E +E AD   E ++++A+ AS E+A+E+GAY  F
Sbjct: 618 YRAIGLGTSGYHHALIKEGIAFSDEEEHLEFADRVYEKLNYYAVKASNEIAKEKGAYEYF 677

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KGS WD G              +   +       W++L+  +   GMRN   MA+APT +
Sbjct: 678 KGSDWDNG--------------NYFELRGYHGKEWEDLRASIHEHGMRNGYIMAVAPTGS 723

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + ++DP  +  +++         V      +L  R  W               
Sbjct: 724 TSIIAGTTAAVDPVMKRFFLEEKKGAIIPRVAP----DLNTRTFW--------------- 764

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
                       ++  A EID   +I++   R + IDQ QS+NLY+  + + +++  +Y 
Sbjct: 765 ------------LYEQAHEIDQSLIIKATGVRGRHIDQGQSVNLYITSDFTMRQILNLYI 812

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
           +A   GLK+ YY+RS+S    E
Sbjct: 813 RAMEEGLKSLYYVRSKSLEVDE 834


>gi|291276994|ref|YP_003516766.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter
           mustelae 12198]
 gi|290964188|emb|CBG40033.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter
           mustelae 12198]
          Length = 789

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 288/820 (35%), Positives = 424/820 (51%), Gaps = 105/820 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++   G +   +  ++      A   L+DVS   +  ++     D ++  +++  LI
Sbjct: 1   MITVVKRSGRIEPLDISKIHKYTSSAVKDLKDVSHSELEVDSKFYFRDNITTEEIQQTLI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I+ + PN+  V AR  L  L  +V                   Y      + + 
Sbjct: 61  KTAVNKIDMDRPNWTFVAARLFLYDLYHKVSGFTG--------------YRSLREYFEKG 106

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
             + +++      FDL +L   +K ERD  F +LG++ LYDRY L       IE+PQ  F
Sbjct: 107 EQEGKIVKGLKEKFDLDFLNAQIKPERDLQFNFLGVKTLYDRYLLKDRQNKPIELPQHMF 166

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM LA  E +    A++FY+++S F  + +TPTL N+ T   QLSSC++ + PD++ 
Sbjct: 167 MAIAMFLAQNEKDPNAYALQFYDVISKFEVITATPTLANARTPRHQLSSCYIGSTPDNIE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GIF A +E A+L+KY GG+G D++ VRGLG+ I G    + GV+PFLK+ ND A+AV+Q 
Sbjct: 227 GIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKITNDVAIAVDQL 286

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G RKGA+  YLE WH DV+EF+DLRKN+G++RRRTHD+  A WI DLFMKRV +N  WTL
Sbjct: 287 GTRKGAIATYLEIWHTDVQEFIDLRKNSGEERRRTHDLFPALWICDLFMKRVEENGLWTL 346

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +   L +LYG+EFE  Y  +E++ D     +   I A  LW+K+LT  FETG P++
Sbjct: 347 FDPYQCGILTELYGEEFEEKYLEFEKRQDI----IKEHIHAKELWKKILTNYFETGMPFL 402

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600
            FKD  N  +P  H G++ SSNLCTEI  N+S+    +                      
Sbjct: 403 CFKDNANKANPNPHTGIIRSSNLCTEIFQNTSANHYFIEVEFEDSSKQYFEEQELVLTDA 462

Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630
                                         N    NL +   +     + +   +  A+R
Sbjct: 463 GIEKKANKITSLDCIGGKKVYITSRVHKDGNTAVCNLASINLSRIHTKEDIDRIVPIAIR 522

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVI++N +   K K +N  +RAIGLG+MG    L    I + S E  E  D  ME I
Sbjct: 523 MLDNVIELNFYPNRKVKSTNLANRAIGLGVMGEAEMLATQKIHWGSQEHFEKIDMIMEAI 582

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S++AI AS  LA E+G Y  F+GS W +G+FPID     A    +          W+ L+
Sbjct: 583 SYNAILASSNLALEKGKYPQFEGSNWSKGIFPIDIANKEACKLVDRGGLFDREYNWNFLR 642

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV   L    
Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPIYRKKWYEENLSGMIPVVVPNL---- 698

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                 N+E  P      +  A+++D   +I++A+ RQKW+DQ 
Sbjct: 699 ----------------------NLETFP-----YYTRAYDLDQKQIIKAAAIRQKWMDQG 731

Query: 871 QSLNLYLD---EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           QS N ++      S K L  IY  AW +GLK+TYYLRS S
Sbjct: 732 QSTNTFIKLDGNASIKSLHEIYTLAWKLGLKSTYYLRSES 771


>gi|242399121|ref|YP_002994545.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM
           739]
 gi|242265514|gb|ACS90196.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM
           739]
          Length = 897

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 206/936 (22%), Positives = 380/936 (40%), Gaps = 141/936 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  AI +A   V        +R  +++  + +  + R+      
Sbjct: 5   KVMKRDGRIVPFDESRIRWAIQRAMWEV-------GVRDDNLLDKVVKDVIDRI-NELYE 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y++Y       R  ++                
Sbjct: 57  GQVPHIENIQDIVELELMRNGLFEVAKAYIIY-------RKKKAEI-------------- 95

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            +      N ++           L ++  +                  +    + +SR L
Sbjct: 96  REEKRKILNKEK-----------LDEIDKRF----------------SINGLRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I+ E      T + L E++            ++    E           YI++  +    
Sbjct: 129 IKNEEGKIVETPKELFERVAILAAIPDLLYDERMFSKEGT---------YIQDLKRVEYY 179

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            ++  +FD +Y               +G   L    F  +     E+ +   M+V++   
Sbjct: 180 LQNFENFDSIY--------------TIGRFKLNKYQFERMVNLYRELAEKGKMKVSIDEF 225

Query: 330 LK------ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           L         + E    EF+NL+ +  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LNMLKNGEFDKYEGVIEEFFNLMVNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + A++ K  GG G +++ +R  G  +  T G + G I F+ + +  +  + QGG 
Sbjct: 286 MKAAHDVAIIQKMGGGTGLNFSKIRPEGDLVGTTTGAASGPISFMHLIDAVSNVIKQGGV 345

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R+GA    LE WH D+E+F+  ++   G +     +++   W    F + + +   + L 
Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEQNVGTNILSNFNISVGMW--ADFWEALKEGKKYPLI 403

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                              K  ++I   +L+ ++  M +    P + 
Sbjct: 404 NPRT---------------------------GKKVKEIDPRSLFEELAYMAWAKADPGVV 436

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           F D  N R+         + ++N C E  L     +   CNL SINL             
Sbjct: 437 FFDVINKRNVLVPAKGEKIRATNPCGEEPLY----DYESCNLASINLAKFVKYDDEGKPY 492

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           F++D+ A  I    + LDN ID+N   + +   +    R IG+G+MG   AL  L I Y 
Sbjct: 493 FEWDEYAKVIMKVAKYLDNAIDVNKFPLPEIDYNTKLSRRIGVGIMGLADALFKLGIRYN 552

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   ++ E+++F+A   S+  A+ERG +  +  + + +G  PI+           
Sbjct: 553 SKEGYDFMRKATEYLTFYAYKYSIRAAKERGPFPLYHKTEYPEGKLPIEGY--------- 603

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                   LPWDEL + ++  G+RN+      PT +++ I   S  I+P +  +Y KS  
Sbjct: 604 -YHKEIWNLPWDELVEDLRKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 662

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G+F  V+     ELK+R L+ + ++  +  + GS+  +E IP+D++KI  TA +I    
Sbjct: 663 VGEFYYVDPIFEAELKKRGLYTDEILQKISDNYGSVQGLEEIPEDVQKIFVTAMDIHWFD 722

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----S 910
            + + +  Q W+  + S  + + ++ + + +   Y  A  +G K     R  S +    +
Sbjct: 723 HLLAQASIQLWLTDSASKTINMPNDATVEDVKAAYLLAHALGCKGVTVYRDGSLSIQVYN 782

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           VE    K +  K +                 +    
Sbjct: 783 VEGEKRKRISAKPSEYAKKILREIVEREPWINKLID 818


>gi|187778604|ref|ZP_02995077.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC
           15579]
 gi|187772229|gb|EDU36031.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC
           15579]
          Length = 763

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 255/816 (31%), Positives = 400/816 (49%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   +G       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRNGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   + +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L E+  D ++  L+  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIENYSDEEIKELSKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A  FY++LS      +TPTL N+GT   QLS
Sbjct: 177 GEVLELPQERFMTIAMHLAIPEGDKKIFYAKGFYDILSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++TV D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGASITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540
           M+R+ +   W+LF P  V  + D            KEF   Y   E+  +         +
Sbjct: 357 MERLEKREQWSLFDPYMVEKIMDYKLEDYFDDVDCKEFTKRYLECEKNINIPR----NTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596
            A+ + +K++    ETG P+I F+D  NI +P +H G+++SSNLC EI  N S  E    
Sbjct: 413 PALDIMKKLMKSAVETGTPFIFFRDTVNIANPNKHKGMIYSSNLCHEIAQNMSESELVEE 472

Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                                 CNL SINL           +  +  I   +R+LDNVI 
Sbjct: 473 EIIDENGYSEVVQRIKAGDMVTCNLNSINLSKVEK------EDFSKCIPLQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++A+ ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI A
Sbjct: 527 LNKLPVKEARVTSDKYRAIGLGTSGYHHFLVNNKIRWESDEHIKVADEIYEEIAYTAIKA 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FKGS W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSEKWQQLQSDIKRYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAARQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757


>gi|167045242|gb|ABZ09901.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG9M20]
 gi|167045330|gb|ABZ09987.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG10D8]
          Length = 885

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 203/916 (22%), Positives = 361/916 (39%), Gaps = 135/916 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELATQLSDAVLAKLTEHGFS 66

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +    +           
Sbjct: 67  ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKILNTK--------- 117

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                                           VL    K+        D+    + +SR 
Sbjct: 118 --------------------------------VLDSVGKSF-------DINCLRVLASRY 138

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L     +        L E++   V  +   +       +          + IEE  +   
Sbjct: 139 LFRDNKHEIIEKPSELFERVAILVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 190

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325
                    L  L       +      +G   L   +F  +    +E+ +   M+V+   
Sbjct: 191 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 235

Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
              M  + K      R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+  
Sbjct: 236 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQS 295

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGG
Sbjct: 296 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 355

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR+GA    +E WH D+E+F+  +   G       +++   W    F   +  +      
Sbjct: 356 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 411

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                 +                             +I+A  L   +    +++  P + 
Sbjct: 412 LRSPKDNSSA-------------------------GEINAHQLIDLIAQSAWKSAEPGLI 446

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRTADGQYE 502

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYN 562

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+       +    
Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 622

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 623 --------YDWGALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS+  +  IPD ++ I  TA +I    
Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSD 734

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            + + +  Q WI  A +  + + ++ + + +   Y  A  MGLK     R  S    V  
Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794

Query: 914 STLKGVDGKLNAVPVT 929
            T +    K    P  
Sbjct: 795 MTGENSVKKFEVKPSD 810


>gi|167044788|gb|ABZ09456.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG8D6]
          Length = 885

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 203/916 (22%), Positives = 361/916 (39%), Gaps = 135/916 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELATQLSDAVLAKLTEHGFS 66

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +    +           
Sbjct: 67  ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKILNTK--------- 117

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                                           VL    K+        D+    + +SR 
Sbjct: 118 --------------------------------VLDSVGKSF-------DINCLRVLASRY 138

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L     +        L E++   V  +   +       +          + IEE  +   
Sbjct: 139 LFRDNKHEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 190

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325
                    L  L       +      +G   L   +F  +    +E+ +   M+V+   
Sbjct: 191 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 235

Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
              M  + K      R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+  
Sbjct: 236 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQS 295

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGG
Sbjct: 296 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 355

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR+GA    +E WH D+E+F+  +   G       +++   W    F   +  +      
Sbjct: 356 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 411

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                 +                             +I+A  L   +    +++  P + 
Sbjct: 412 LRSPKDNSSA-------------------------GEINAHQLIDLIAQSAWKSAEPGLI 446

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRTADGQYE 502

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYN 562

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+       +    
Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 622

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     W  L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 623 --------YDWGALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS+  +  IPD ++ I  TA +I    
Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSD 734

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            + + +  Q WI  A +  + + ++ + + +   Y  A  MGLK     R  S    V  
Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794

Query: 914 STLKGVDGKLNAVPVT 929
            T +    K    P  
Sbjct: 795 MTGENSVKKFEVKPSD 810


>gi|42557734|emb|CAF28708.1| putative ribonucleotide reductase alpha subunit [uncultured
           crenarchaeote]
          Length = 906

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 214/918 (23%), Positives = 381/918 (41%), Gaps = 137/918 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH--- 86
           Q+ KR+ G+  F+ SKIS AI KA MA              + + L+E+ V ++ Q    
Sbjct: 21  QIRKRDKGLVDFNNSKISNAIYKALMA-------AGKADSKLAERLSEKVVQKMDQQFSI 73

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +  +  +ED+QD VE  L++ G  +  + Y+LYR ER  VR  +    +         
Sbjct: 74  LDTNRVPSVEDVQDMVESILIEEGLSETAKAYILYRHERRKVRDEKKKILNK-------- 125

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
                                     L +V                    D+ +  + +S
Sbjct: 126 ------------------------KDLDEVDKAF----------------DVNSLRVLAS 145

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           R L+    N        L E++   V         +                 ++   +A
Sbjct: 146 RYLLRDNNNEIVEDPGLLFERVAILVTIPDILHDSETYSS----------SEVVQNITEA 195

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
              ++ + DFDL                 +G   L   +F  +    I++ ++  M+++ 
Sbjct: 196 EEYYKKLDDFDLKL--------------KIGNHYLNKYHFESLIRHYIDLAKSGHMKISF 241

Query: 327 G------LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
                     + ++   R VE+YNL+ S  F+ +TPTL N+G +  QLS+CF+  + DD+
Sbjct: 242 KDLLRHIAEGQLSKYSDRIVEYYNLMVSKDFLPNTPTLMNAGAKLGQLSACFVLDMKDDM 301

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI  +  + AM+ K  GG+G +++ +R  G  +  T+G + G I F+++ +     V Q
Sbjct: 302 SGIMKSSTDAAMIFKSGGGVGINYSNLRPEGDIVASTSGVASGPISFMRIIDTITDVVKQ 361

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKR+GA    +E+WH D+E+F+  +   G       +++   W           N  + 
Sbjct: 362 GGKRRGANMGIMESWHPDIEKFVTAKTKPG--VFENFNVSVGIWSDFWQSIINENNHKYN 419

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L +P                                 ++I +  L   +    +++  P 
Sbjct: 420 LKNPTTQE---------------------------PIKQIDSHQLLDLITFSAWKSAEPG 452

Query: 561 ITFKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613
           + F D  N  +P  +   G + ++N C E +L         CNLGSINL           
Sbjct: 453 VIFFDNINKYNPCINVKEGPLRATNPCGEQSLYPY----ESCNLGSINLANFVKRSVDGK 508

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           ++FD+ +    IR + R LDNVID+N + +E+ + +    R IGLG+MG    L  L IP
Sbjct: 509 HEFDWQRYEQAIRLSTRFLDNVIDMNKYPVEEIEHNTKLTRRIGLGIMGIADLLFTLGIP 568

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S E  +  +   E +S++++  SV +A+ R  +  F  + + +G        ++    
Sbjct: 569 YNSKEGYDFMNRVAEALSYYSMEESVAIAKARDPFPLFNQTDYVEG-------KMIPVAG 621

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                 R     WD L ++++  G+RNS    IAPT T++ I   S  ++P +  ++ K 
Sbjct: 622 YYEIPKRYHSYDWDSLIEKIEKYGIRNSWTTTIAPTGTLSMIADTSNGVEPVFALVFEKR 681

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G F   N    N LK+  L+++ +++ +  + GS+  +  IP+ L+KI  TA ++  
Sbjct: 682 VTVGRFFYTNRIFENILKENGLYNDEILTKIANNYGSVRGLPEIPEWLQKIFVTAIDVHW 741

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SV 911
              + + +  QKWI  A +  + +  + + + +   Y  +  MGLK     R  S    V
Sbjct: 742 TDHLMAQAVWQKWISNAIAKTINMPSDVTVEDIKAAYLLSHEMGLKGVTVYRDGSRHEQV 801

Query: 912 EKSTLKGVDGKLNAVPVT 929
              T    + K    P +
Sbjct: 802 LHITGNDKEKKFIVKPSS 819


>gi|167043944|gb|ABZ08631.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG3J11]
          Length = 890

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 209/916 (22%), Positives = 367/916 (40%), Gaps = 135/916 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI KAF A              +   L++  + +L +H  S
Sbjct: 19  QVRKRDGSVSDFNRDKILNAIYKAFSASNKPDKG-------LAIKLSDGVLVKLTEHGFS 71

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +            +K+ 
Sbjct: 72  ANNPPSVEAIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEK------------MKV- 118

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                    N+K+L+ + +                             D+    + +SR 
Sbjct: 119 --------LNTKKLDSVGKSF---------------------------DINCLRVLASRY 143

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L     N        L E++   V  +   +       +          + IEE  +   
Sbjct: 144 LFRDNKNEIIEKPSELFERVAILVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 195

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325
                    L  L       +      +G   L   +F  +    +E+ +   M+V+   
Sbjct: 196 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 240

Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
              M  + K      R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ G
Sbjct: 241 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGG 300

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGG
Sbjct: 301 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 360

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR+GA    +E WH D+E+F+  +   G       +++   W    F   +  +      
Sbjct: 361 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 416

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                 +                             +I+A  L   +    +++  P + 
Sbjct: 417 LRSPKDNSSA-------------------------GEINAHHLIDLIAQSAWKSAEPGLI 451

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 452 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRMADGQYE 507

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 508 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 567

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+       +    
Sbjct: 568 SKEGYDFQLKLAEALTYYSMEESVALAKNRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 627

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 628 --------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 679

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I    
Sbjct: 680 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSD 739

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            + + +  Q WI  A +  + + ++ S + +   Y  A  MGLK     R  S    V  
Sbjct: 740 HLLAQAVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 799

Query: 914 STLKGVDGKLNAVPVT 929
            T +    +    P  
Sbjct: 800 MTGENSVKRFEVKPSD 815


>gi|167042931|gb|ABZ07646.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_ANIW137N13]
          Length = 885

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 209/916 (22%), Positives = 366/916 (39%), Gaps = 135/916 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 14  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELAIKLSDAVLIKLTEHGFS 66

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +            +K++
Sbjct: 67  VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEK------------MKVL 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                                   L  V                    D+    + +SR 
Sbjct: 115 N--------------------TKRLDSVGKSF----------------DINCLRVLASRY 138

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L     N        L E++   V  +   +       +          + IEE  +   
Sbjct: 139 LFRDNKNEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 190

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325
                    L  L       +      +G   L   +F  +    +E+ +   M+V+   
Sbjct: 191 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 235

Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
              M  + K      R  E+Y L+ S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ G
Sbjct: 236 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGG 295

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGG
Sbjct: 296 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 355

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR+GA    +E WH D+E+F+  +   G       +++   W              W + 
Sbjct: 356 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW-----------KDFWDVL 402

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
              E            +  Y     + +        +I+A  L   +    +++  P + 
Sbjct: 403 VNSE------------DGKYTLRSPKDNSSAG----EINAHHLIDLIAQSAWKSAEPGLI 446

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRMADGQYE 502

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 562

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+       +    
Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 622

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 623 --------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I    
Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSD 734

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            + + +  Q WI  A +  + + ++ S + +   Y  A  MGLK     R  S    V  
Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794

Query: 914 STLKGVDGKLNAVPVT 929
            T +    +    P  
Sbjct: 795 MTGENSVKRFEVKPSD 810


>gi|118576941|ref|YP_876684.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A]
 gi|118195462|gb|ABK78380.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A]
          Length = 881

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/965 (23%), Positives = 397/965 (41%), Gaps = 162/965 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS- 89
           + KRNG + +F+  KI+ AI KA  A        S    D+   L    V +L+Q   S 
Sbjct: 13  IRKRNGTLDNFNMDKITNAISKALAAT-------SEADHDLASELAHGVVKKLVQQGFSI 65

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
           ++   +EDIQD VE +L++SGH +I + Y+LYR ER  +R  +    +   + P      
Sbjct: 66  SIPPSVEDIQDMVESTLIESGHSEIAKAYILYRHERRKIRDEKLRLLNAKALDPV----- 120

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                                          DL +  + +SR L
Sbjct: 121 -------------------------------------------AKSFDLNSLRVLASRYL 137

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           +             L E++   VL +V      +   + +  +P       ++  +AR  
Sbjct: 138 LRNNKGEITEGPSELFERVA--VLISVGDLLYDSELFDKEGRHP-------QDVGEARGY 188

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG-- 327
            + +  FD  +               +G   L   +F  +    + +     M+V     
Sbjct: 189 LDKLDSFDCKF--------------KIGNYYLNKYHFRALINHYVTLAGKGQMKVGFKDL 234

Query: 328 ----LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
               +A +     +R  E+Y L++S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ GI
Sbjct: 235 LTQIIAKRHNNYAERISEYYELMASQDFLPNSPTMMNAGGRLGQLSACFVLNMPDDMGGI 294

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             +  + AM+ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGK
Sbjct: 295 MKSTSDAAMIFKSGGGVGINYSDLRQEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGK 354

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    +E WH DVE+F+  +   G       +++   W  + F + +          
Sbjct: 355 RRGANMGIIEAWHPDVEKFITNKTEAG--ILENFNVSVGVW--EDFWQALAGPGEGKYML 410

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                                          K  R+ISA  L   +    +++  P + F
Sbjct: 411 RSTA--------------------------GKPVREISAHQLIDLIAHSAWKSAEPGLIF 444

Query: 564 KDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616
            D  N  +       G + ++N C E +L         CNLGSINL            +F
Sbjct: 445 FDNINKYNVLAKAMGGALRATNPCGEQSLYPY----ESCNLGSINLARLVKRKADGEFEF 500

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+ +    IR   R LDNVID+N + +++  +++   R IGLG+MG    L+ L IPY S
Sbjct: 501 DWQRYEEMIRKTTRFLDNVIDVNLYPVKEIDRASKESRRIGLGVMGVADLLYKLRIPYNS 560

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            E  ++  +  E ++++++  SV LA+ RG +     + + +G  P+     LA      
Sbjct: 561 KEGYDLQSKLAEALTYYSMEESVALAKSRGEFPLCPQTEYPEGKIPVAGYYELA------ 614

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                    WD L  ++K  G+RN+    +APT T++ +   S  ++PS+  ++ K    
Sbjct: 615 --RDEHTYDWDALIDKIKRHGIRNALTTTVAPTGTLSMLADCSNGMEPSFALVFEKRVTV 672

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G F   N  +   LK+  L+++ +++ +  + GS+  +E IP+ ++KI  TA +I     
Sbjct: 673 GKFFYTNKIIAQILKEHGLYNDDLLARISENYGSLRGLEEIPEWMQKIFVTAMDIHWSDH 732

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS----- 910
           +   S  Q+WI  A +  + + ++ +   +   Y  A  +GLK T   R  S        
Sbjct: 733 LMVQSVWQEWIGNAIAKTINMPNDVTADDVKASYLLAHELGLKGTTVYRDGSRHKQVLHM 792

Query: 911 --------------------VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE- 949
                               VEK   + V  ++NA   + P     ++ +  + T   E 
Sbjct: 793 ASENSEKTFDVYPSLYISEYVEKIQDRYVRTEVNAALSSGPTEEAPTVDLNITETVPEED 852

Query: 950 -CEVC 953
            C  C
Sbjct: 853 LCPTC 857


>gi|167044534|gb|ABZ09208.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine crenarchaeote HF4000_APKG6N3]
          Length = 890

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 207/916 (22%), Positives = 364/916 (39%), Gaps = 135/916 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V+ F+  KI  AI +AF A             ++   L++  + +L +H  S
Sbjct: 19  QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELAIKLSDAVLIKLTEHGFS 71

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +L+  GH  I + Y+LYR ER  +R  +            +K++
Sbjct: 72  VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEK------------MKVL 119

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                                   L  V                    D+    + +SR 
Sbjct: 120 N--------------------AKRLDSVGKSF----------------DINCLRVLASRY 143

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L     N        L E++   V  +   +       +          + +EE  +   
Sbjct: 144 LFRDNKNEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGM------SQNVEEAAEY-- 195

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325
                    L  L       +      +G   L   +F  +    +E+ +   M+V+   
Sbjct: 196 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 240

Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
              M  + K      R  E+Y L++S  F+ ++PT+ N+G R  QLS+CF+  +PDD+ G
Sbjct: 241 LLTMLASKKFDAYADRISEYYELMTSQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGG 300

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGG
Sbjct: 301 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 360

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR+GA    +E WH D+E+F+  +   G       +++   W    F   +  +      
Sbjct: 361 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 416

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                 +                             +I+A  L   +    +++  P + 
Sbjct: 417 LRSPKDNSSA-------------------------GEINAHHLIDLIAQSAWKSAEPGLI 451

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615
           F D  N  +       G + ++N C E +L         CNLGSINL            +
Sbjct: 452 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRMADGQYE 507

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +    I    R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 508 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 567

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  +   +  E ++++++  SV LA+ RG +     + + +G  P+       +    
Sbjct: 568 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 627

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                     WD L ++++  G+RN     +APT T++ +   S  ++P++  ++ K   
Sbjct: 628 --------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 679

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N      LK+ +L+ + +++ +  + GS   I  IPD ++ I  TA +I    
Sbjct: 680 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWTD 739

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            + + S  Q WI  A +  + + ++ S + +   Y  A  MGLK     R  S    V  
Sbjct: 740 HLLAQSVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 799

Query: 914 STLKGVDGKLNAVPVT 929
            T +    +    P  
Sbjct: 800 MTGENSVKRFEVKPSD 815


>gi|315425463|dbj|BAJ47126.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 834

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 216/925 (23%), Positives = 378/925 (40%), Gaps = 128/925 (13%)

Query: 40  SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ 99
            FD  +I  AI KA        A++ +  + +++ +    + +L     +  I H+E+IQ
Sbjct: 2   DFDAERIRGAIRKAM-------AAKQVMDEKVLEKVVASVLEQLSSRFGAEKIPHVEEIQ 54

Query: 100 DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNS 159
           D VE +LM+ G  ++ + Y+LYR ER+ +R  +        +    K         +F+ 
Sbjct: 55  DIVESALMEHGLKEVAKAYILYRHERTRIREEKMRILETGYVDEVDK---------AFSV 105

Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
             L   +  A   L+D S +++  E  K M+                             
Sbjct: 106 NAL--RLMAARYLLRDRSGRLI--ERPKQMFQR-------------------------TA 136

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
               L + L   +      + +K    +++    E +   I  G    +         L 
Sbjct: 137 ALIVLADILYNPMFFDKSGQQKKWEEDDVKL---EEYADNIGVGPSDNMHETKWNIHHLE 193

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            LA   K          G+               +E            L    +   +  
Sbjct: 194 RLATLYKR-----LNERGM-------MRKPLREVLE-----------YLKSNPSRFYENY 230

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
             +Y+L+    F+ ++PTLFN+GT   QLS+CF+  V DD+  I    +E A++ K  GG
Sbjct: 231 RRYYDLMVGKRFLPNSPTLFNAGTVLGQLSACFVLDVEDDISSIMRTAEEAAVIFKTGGG 290

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +++ +R  G  +  T G + G + F+++ +     V QGG+R+GA    L   H D+
Sbjct: 291 VGINYSKLRPEGDVVSSTGGVASGPVSFMRIVDTVTDVVKQGGRRRGANIGILNINHPDI 350

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           ++F+  ++  G       + N +  +   F K   ++  + L +P +             
Sbjct: 351 DKFISAKQRPGFLE----NFNISVMVTADFWKHYEEDRPYPLVNPRD------------- 393

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-GV 578
                           V+R +    L R++    ++T  P + + D  N  +P +   G 
Sbjct: 394 --------------GSVWRLVDTRKLLRQIAENAWKTADPGLLYHDNINELNPLREAYGD 439

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           ++  N C E  L         CNLGSINL A   + + D+D L   +  AVR LDNV+D+
Sbjct: 440 IYCVNPCGEQPLYPH----ESCNLGSINLHAFVKDGRLDWDALGKCVEDAVRFLDNVVDL 495

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             H  E  +K     R IGLG+MG    L+ L IPY+S E  E+    ME+I++ A+  S
Sbjct: 496 TKHPTEAIEKMTLRTRRIGLGIMGLADMLYALRIPYSSEEGFEMMRRVMEYIAYKAVETS 555

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           VELA+ERG +  F  S W +G  P   +    E++            W  L + VK  G+
Sbjct: 556 VELAEERGPFPDFPRSSWARGELPFRGLREGRELKMY----------WSRLVEHVKK-GI 604

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS+ + +APT +I+ +   S  ++P +  +Y K   +G F   +      L++  L  +
Sbjct: 605 RNSHLLTVAPTGSISMLADTSSGLEPQFALVYRKQVTAGVFYYSDPVFEKALEEYGLPKQ 664

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            ++  +  + GS+  I+ IP+DL+++  TA +I     + +    QKW+D + S  + + 
Sbjct: 665 EIVRRVAENGGSVQGIQEIPEDLRRVFVTALDIPWWDHLRAQHEIQKWVDASVSKTINMP 724

Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST---------LKGVDGKLNAVPV 928
              +   +   +  A  +GLK     R  S ++    T         L  ++     +  
Sbjct: 725 SWVTVDDVLKAFIAAHRLGLKGVTVYRDGSKSAQVLVTPTQRNRRYELSVINNTPELLRG 784

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVC 953
                       P      T C VC
Sbjct: 785 LGIEVEEKIAETPPPAIIHTTCPVC 809


>gi|170758616|ref|YP_001788132.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169405605|gb|ACA54016.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 763

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 397/816 (48%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   I +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKIIQNGKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKTKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTTFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540
           MKR+ +   W+LF P  V  +              +EF   Y   ER  +         +
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR----DTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
             + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S       
Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEE 472

Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +   CNL SINL           ++ +  I   +R+LDNVI 
Sbjct: 473 KIIDDNGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +
Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FK S W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757


>gi|168179223|ref|ZP_02613887.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669564|gb|EDT81540.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum NCTC 2916]
          Length = 763

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 399/816 (48%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   + +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540
           MKR+ +   W+LF P  V  +              +EF   Y   ER  +         +
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR----DTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
             + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S       
Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEE 472

Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +   CNL SINL           ++ +  I   +R+LDNVI 
Sbjct: 473 EIIDENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +
Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTAIKS 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FKGS W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757


>gi|226950224|ref|YP_002805315.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843054|gb|ACO85720.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 763

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 398/816 (48%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   + +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K     +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYGKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540
           MKR+ +   W+LF P  V  +              +EF   Y   ER  +         +
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR----DTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
             + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S       
Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHRGMIYSSNLCHEIAQNMSESQLLEE 472

Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +   CNL SINL           ++ +  I   +R+LDNVI 
Sbjct: 473 EIIDENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +
Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTAIKS 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FKGS W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757


>gi|153939013|ref|YP_001392092.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum F str. Langeland]
 gi|152934909|gb|ABS40407.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum F str. Langeland]
          Length = 763

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 252/816 (30%), Positives = 396/816 (48%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   + +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540
           MKR+ +   W+LF P  V  +              +EF   Y   ER  +         +
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR----DTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
             + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S       
Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEE 472

Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +   CNL SINL           ++    I   +R+LDNVI 
Sbjct: 473 EIIDGNGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +
Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FK S W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757


>gi|170754701|ref|YP_001782420.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum B1 str. Okra]
 gi|169119913|gb|ACA43749.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 763

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/816 (30%), Positives = 396/816 (48%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   + +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A +FY++LS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDILSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540
           MKR+ +   W+LF P  V  +              +EF   Y   ER  +         +
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR----DTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
             + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S       
Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEE 472

Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +   CNL SINL           ++    I   +R+LDNVI 
Sbjct: 473 EIIDGNGYSEIVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +
Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FK S W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757


>gi|322807125|emb|CBZ04699.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Clostridium botulinum H04402 065]
          Length = 763

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 253/816 (31%), Positives = 396/816 (48%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELEVDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   I +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKIIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540
           MKR+ +   W+LF P  V  +              +EF   Y   ER  +         +
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDLREFTNKYLECERNTNIPR----DTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
             + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S       
Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEE 472

Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +   CNL SINL           ++    I   +R+LDNVI 
Sbjct: 473 EIIDGNGYSEIVQRIKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +
Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FK S W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757


>gi|148380774|ref|YP_001255315.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|153930834|ref|YP_001385058.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum A str. ATCC 19397]
 gi|148290258|emb|CAL84377.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|152926878|gb|ABS32378.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum A str. ATCC 19397]
          Length = 763

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/812 (30%), Positives = 397/812 (48%), Gaps = 101/812 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG       ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   + +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y +   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYQLVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGNN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           MKR+ +   W+LF P  V       L D +  E    + N   + +R        +  + 
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRKEFTNKYLECERNTNIPRDTVPTLD 416

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S           
Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEEEIID 476

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +   CNL SINL           ++    I   +R+LDNVI +N  
Sbjct: 477 GNGYSEIVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVISLNKL 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +S+EL
Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKSSMEL 590

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G+Y +FK S W+ G                      +   W +L+  +K  GMRN 
Sbjct: 591 AKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYGMRNG 636

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
              AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W     
Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW----- 687

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
                                  +  A  ID  W I++ + RQK IDQAQS NLY+  E 
Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 726 KAKEILNMYIESWKQGVKTIYYVRNKSLEMDE 757


>gi|168184458|ref|ZP_02619122.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Bf]
 gi|237796250|ref|YP_002863802.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum Ba4 str. 657]
 gi|182672445|gb|EDT84406.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Bf]
 gi|229261891|gb|ACQ52924.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 763

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 255/816 (31%), Positives = 399/816 (48%), Gaps = 109/816 (13%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI   DG   S   ++ + +V+ AC G++      +  ++     DG++  +++  LI 
Sbjct: 3   IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62

Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++   + +               N+  V AR L   L +E   + +       +      
Sbjct: 63  TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
           Y E   + ++  +    L ++  D ++  LA  +  ERD  F Y GL++L DRY +   N
Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176

Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           G  +E+PQ  FM +AM LA+ E  +K   A +FY+LLS      +TPTL N+GT   QLS
Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GV+P+++
Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+  +  IPDLF
Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540
           MKR+ +   W+LF P  V  +              +EF   Y   ER  +         +
Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR----DTV 412

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
             + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S       
Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEE 472

Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +   CNL SINL           ++ +  I   +R+LDNVI 
Sbjct: 473 EIIDENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +++AK ++  +RAIGLG  G+   L    I + S E +++ADE  E I++ AI +
Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKISWESDEHIKVADEIYEEIAYIAIES 586

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+E+G+Y +FKGS W+ G                      +   W +L+  +K  G
Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R+RS    E
Sbjct: 722 TPEIKAKEILNMYMESWRQGVKTIYYVRNRSLEMDE 757


>gi|118442856|ref|YP_878439.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           novyi NT]
 gi|118133312|gb|ABK60356.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium
           novyi NT]
          Length = 764

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/821 (30%), Positives = 394/821 (47%), Gaps = 110/821 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K+   +G       ++ + +V  AC GL       +  ++     +G+S  +++  LI
Sbjct: 2   DIKVRKRNGEYEKLCVEKTKKMVSLACEGLDGCDPLELEIDSRIQFRNGMSTKEIQKILI 61

Query: 204 FSSRTLI--------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            ++   +              +   N+  V AR L   L +E       K  +   H   
Sbjct: 62  QTAIEKVIYIDKNNYDNSPSKKTNINWQYVAARLLAFDLYKEA------KINRNYSHFGY 115

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
             +     + +  G+  + L E+  D ++  L+  ++ +RD  F Y GL++L DRY +  
Sbjct: 116 GDFLSLVKKLVNMGLYGKYLIENYSDEEIKELSEYIEPKRDELFNYEGLKLLNDRYLIKG 175

Query: 309 INGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            NG  +E+PQ  FM +AM LA+ E   +   A +FY+L+S      +TPTL N+GT   Q
Sbjct: 176 FNGEILELPQERFMVIAMHLAIPEGKNRVYFAKKFYDLMSKLKMTVATPTLGNAGTPFYQ 235

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF++ V D+L+ I+   Q+ A ++K+ G LG     +R L + I G    S GVIP+
Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVIPW 295

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ T+  IPD
Sbjct: 296 IKLYNDTAVAVDQLGKRKGGASITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSIPD 355

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFR 538
           +FMKR+     W+LF P  +  L              KEF   Y   E      E     
Sbjct: 356 IFMKRLLNRENWSLFDPYTIQKLMGYKLEDYFDDEENKEFTKRYLECEA----NENLPRD 411

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-- 596
            +S + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S  E  
Sbjct: 412 TVSCLDVMKKIMKSAVETGAPFIFFRDTVNRANPNKHKGMIYSSNLCHEIAQNMSESELI 471

Query: 597 ---------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
                                   CNL SINL           D+L  +I   +R+LDNV
Sbjct: 472 SEEVTDKNGFNEVVSRIKSGDMVTCNLNSINLSKVSR------DELKESIPLQIRMLDNV 525

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I +N   ++++  ++  +RAIGLG  G+   L    I + S E ++  D   E I++ AI
Sbjct: 526 ISLNRLPVKESAITSDKYRAIGLGTSGYHQYLASNKIKWESEEHIKEVDSLFEDIAYEAI 585

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+ELA+E+GAY+ F+GS W  G                      +   W++L++ +  
Sbjct: 586 KASMELAKEKGAYAEFEGSEWQSGK--------------YFERRGYNSERWNKLREDIAK 631

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RN   MA+APT + +NI   +  IDP ++  +++    G FT        +L   + 
Sbjct: 632 YGIRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEE-KKGSFT---PKTAPDLNNENF 687

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W                            +  A  I+  W I++ + RQK IDQ+QS NL
Sbjct: 688 W---------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNL 720

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Y+  E   K +  +Y ++W  G+KT YY+R++S    E S+
Sbjct: 721 YITPEVKAKDILNMYTESWRQGIKTIYYVRNKSIEMDECSS 761


>gi|229827461|ref|ZP_04453530.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC
           49176]
 gi|229788399|gb|EEP24513.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC
           49176]
          Length = 763

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 258/817 (31%), Positives = 389/817 (47%), Gaps = 109/817 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   +G   +   ++ + +V  AC GL       +  ++     +G+S  +++  LI
Sbjct: 2   DILIKKRNGRYENLCVEKTKKMVALACEGLDGCDPMELEMDSKIQFKNGMSTKEIQQVLI 61

Query: 204 FSSRT-------------LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            S+               L      +  V AR  L  L +E       K  +        
Sbjct: 62  RSAIEKVIVNEQSENGSGLSRMNSKWQHVAARLFLFDLYKEA------KISRNYKTFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            + +     +E G+          + +   LA  +K ERDF F Y G+++L DRY +H +
Sbjct: 116 DFKKLIEMLVERGIYTEDFITKYTEAERRELAEYIKPERDFLFNYEGVKLLADRYLVHGV 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           NG  +E+PQ  FM +AM LA  E +K   A  FY+LLS      +TPTL N+GT   QLS
Sbjct: 176 NGEVMELPQERFMAIAMHLASVEEDKVYYAKAFYDLLSKLKMTVATPTLANAGTTFNQLS 235

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCF++TV D+L+ I+    + + ++K+ G LG     VR LG+ I G N  S GVIP+++
Sbjct: 236 SCFISTVSDNLWSIYDVNSKFSKVSKHGGALGIYLGKVRSLGSDIRGYNNASGGVIPWVR 295

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + NDTAVAV+Q G+RKG     L+ WH D+ EF+DLR N GDDRR+ HD+  A  IPD+F
Sbjct: 296 LYNDTAVAVDQLGRRKGGASITLDIWHKDLYEFIDLRTNNGDDRRKAHDIFPAISIPDIF 355

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFRK 539
           M+R+     ++LF P EV  L               KEF   Y+  E      +I     
Sbjct: 356 MERLINRQEFSLFDPHEVEKLMGFSLEDYYDKDEKHKEFSERYKLCENDNRLTKI----T 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---- 595
           + A+ + +K++    ETG P+I F+D  N  +P  H G+++ SNLC EI  N S      
Sbjct: 412 VPALDIMKKIMKSAVETGTPFIFFRDTVNRANPNSHAGMIYGSNLCHEIAQNMSETKYVS 471

Query: 596 -------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                              +   CNL S+NL           ++L   +   +R+LDNVI
Sbjct: 472 EEIITENGETKIVTTVKSGDMVTCNLNSVNLGNVT------LEELKENVPLQIRMLDNVI 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +N   +  AK ++  +RAIGLG+ G+   L    I + + + +E AD   E I+++AI 
Sbjct: 526 TLNMFPVADAKVTSLKYRAIGLGVSGYHHYLAKNAIAWENEKHIEEADRLFEEIAYNAIK 585

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ELA+E+GAY+ F+GS W  G              +           W ELKK V   
Sbjct: 586 ASMELAKEKGAYAEFEGSKWQTG--------------EYFDERGYVSERWQELKKDVMKY 631

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN   MA+APT + +NI G +  IDP ++  +V+    G FT                
Sbjct: 632 GLRNGYLMAVAPTGSTSNIAGTTAGIDPIFKKFFVEE-KKGSFTPK-------------- 676

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                               + D+    +  A  I+ +W I + + RQ+ IDQAQS NLY
Sbjct: 677 ----------------TAPELNDETFWYYKEAHYINQLWSIRACAARQRHIDQAQSFNLY 720

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +  E   K +  +Y +A+  G+KT YY+R+RS    E
Sbjct: 721 ITPEVKAKDILDMYVEAYKAGIKTIYYVRNRSLEMDE 757


>gi|227498393|ref|ZP_03928543.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
 gi|226903855|gb|EEH89773.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
          Length = 760

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 246/814 (30%), Positives = 382/814 (46%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   DG     + ++ + ++  AC GL       +  ++     DG++   ++  LI
Sbjct: 2   DIMIRKRDGHFEPLSVEKTKRMIAFACLGLDSCDPMELEMDSKLQFVDGMTTKQIQQTLI 61

Query: 204 FSSRT-------------LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++               L E  P++  V AR  L  L +E         Q+        
Sbjct: 62  RTAIEKVIPSRHEGGGVPLQEMNPDWQFVAARLFLFDLYKEA------AIQRRYKAFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +       +++   A        + +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 116 NFSNLIHMLVDKKKYADFFVTDYTEDELQELGDYIKPKRDYLFNYEGLKLLADRYLVRGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K   A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEVYELPQERFMAIAMHLALVEGKNKVAYAKKFYDLMSELKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF+  V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFVAGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWV 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q G+RKG     L+ WH D  EF++LR N GDDRR+ HD+  +  +P+L
Sbjct: 296 RLYNDTAVAVDQLGRRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPSISVPNL 355

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+ +   +TLF P EV+ +              K F   Y   E+ +    I     
Sbjct: 356 FMERLIKRENFTLFDPHEVNTVMGFALEDFYDTEEDKAFTEHYLACEKDSRLHGI----S 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALEMMKKIMKSAVETGTPFIFFRDTVNEANPNKHAGMIYASNLCHEIAQNVGFTNLKK 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       ++  +   CNL SINL         D D L   I   VR+LDNVI IN
Sbjct: 472 EILEDDGTITTVTAPGDMVTCNLNSINLGKI------DEDFLEEQIALQVRMLDNVITIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ +   +RAIGLG  G+   L    + + S E +  AD   E I+++AI AS+
Sbjct: 526 QTPVPESRLTCDKYRAIGLGTSGYHHYLVKHGLRWESKEHIAAADALFEKIAYYAIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           EL++E+GAY +FKGS WD G                      +   W  L   V   GMR
Sbjct: 586 ELSKEKGAYPAFKGSEWDTGK--------------YFTRRGYTSEKWQRLAADVHKYGMR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   +A+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 632 NGYLLAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KQGSFT---PKTAPDLNPKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I + + RQ+ IDQAQS NLY+  
Sbjct: 685 ------------------------LYKEAHTIDQQWSIRANAARQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
                ++  +Y +A+  G+KT YY+R++S    E
Sbjct: 721 RMKASEILNLYIEAYKQGIKTIYYVRNQSLEMDE 754


>gi|170289761|ref|YP_001736577.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173841|gb|ACB06894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 876

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/964 (23%), Positives = 392/964 (40%), Gaps = 149/964 (15%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++  +V+KR+G V  FD  +I RAI  A   V   G      +  ++K + +   +    
Sbjct: 1   MRVTKVVKRDGRVVEFDSFRIRRAIEMAMREV---GKFDEAILDKVVKYVLDVIDSTFSD 57

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                   H+E+IQD VE +LM+    ++ + Y++YR+ER  +R  +        +    
Sbjct: 58  ERP----PHVEEIQDIVELALMKYDLFEVAKAYIVYRKEREKIRKEKMAILGKDYVDD-- 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +                         L   + +++ S   +   DG             
Sbjct: 112 -VDKR----------------------LSLNAVRLLASRYLQKGPDG------------- 135

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            R L + +  + ++ +  ++  +  + L    +  Q+    E            +  G  
Sbjct: 136 -RFLEDPKGLFIRIASLVVIPDILYDPLIFDKEGEQEVHPTEYFNPEEWAGKVGLGGGDP 194

Query: 266 ARLLHE--SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
              L          L  +               G               R+   Q F M 
Sbjct: 195 ENHLAPPFVWNAHHLERMKALYD-----ELNSQG-------------KMRVSWSQFFDML 236

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
                  +     K  +E+Y L+    F+ ++PTLFN+GT   QLS+CF+  + D L  I
Sbjct: 237 ----RDGRFDHHYKDFLEYYRLMVDLKFIPNSPTLFNAGTMLGQLSACFVLPIEDSLESI 292

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             +  E AM+ K  GG+G +++ +R  G  +  T G++ G + F+++ +     V QGG+
Sbjct: 293 MRSATEAAMIFKSGGGVGINYSKLRPQGDIVRSTGGQASGPVSFMRIIDVITDVVKQGGR 352

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    LE WH D+ +F++ +   G+      + N +  I + F K   +   + L +
Sbjct: 353 RRGANMGILEIWHPDIMKFIEAKAKPGNLE----NFNLSVMITEDFWKYYEEGKDYPLIN 408

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P                              +V+  I     +RK+  M + TG P + F
Sbjct: 409 PR---------------------------NGEVWGSIDPREAFRKIAEMAWRTGDPGVLF 441

Query: 564 KDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDY 618
            D  N R+  + H+G + S+N C E  L         CNLGS+NL A+         FD+
Sbjct: 442 ADNINRRNILREHLGEIKSTNPCGEEPLYPY----ESCNLGSMNLYAYIRRENGLVTFDW 497

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           D+ +  IR A+R LDN+ID+N   I + +K+    R +GLGLMG    L  L IPY S E
Sbjct: 498 DEYSRDIRKALRFLDNIIDVNKFPIPEIEKTTKRTRKVGLGLMGLADTLFALRIPYNSEE 557

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
                  + E++++ A+  SVE A+ERG++  F  S + +G  P++              
Sbjct: 558 GFNFMRRAAEYLTYFAMLESVERAKERGSFPLFPESGYVRGEMPVE----------GFYH 607

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                L WD L++++   G+RN+    IAPT +I+ I  VS  I+P +  ++ K    G 
Sbjct: 608 PEIWNLDWDYLREQIMRNGIRNAEVTTIAPTGSISMIAEVSSGIEPQFALVFEKRVTVGS 667

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI------ERIPDDLKKIHATAFEID 852
           F  V++    +LK+  L+ E ++ D+  + GS+  I      E + + +K+I   A++I 
Sbjct: 668 FFYVDAEFERQLKENGLYSEKILRDIAENGGSLYGIEAPEGKEDVIERMKRIFLVAYDIP 727

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS---- 907
               I + +   +WI  A S  + +    S   ++  Y  A  +GLK     R  S    
Sbjct: 728 WWDHIRAEAEISRWICAAVSKTINMPNWVSVSDIEKAYLFAHRLGLKGITVYRDGSKSAQ 787

Query: 908 ------------ATSVEKSTLKGVD------GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
                       A+ +E  TLK ++       +L    V +   +      P+       
Sbjct: 788 VLITPTQRRGEYASFIENETLKMMESLGIELPQLRKAKVEEKTQAQPVFKPPAQPNHVET 847

Query: 950 CEVC 953
           C  C
Sbjct: 848 CPEC 851


>gi|329766042|ref|ZP_08257603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137497|gb|EGG41772.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 882

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 205/911 (22%), Positives = 379/911 (41%), Gaps = 125/911 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-NK 88
           ++ KR+G VT+F+ +KIS AI KA  A        S   + +  +L  + V +L++    
Sbjct: 12  EIRKRSGAVTAFNQNKISNAIFKALAAT-------SKADRVLADHLANKVVQKLVEQGFT 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           ++    +EDIQD VE +L+ SG+  I + Y++YR ER  +R  +            +K++
Sbjct: 65  NSRAPSVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLRDEK------------MKVL 112

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                                   L  VS +                 DL    + +SR 
Sbjct: 113 N--------------------AKSLDSVSKEF----------------DLNCLRVLASRY 136

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L     N    +   + E++   +L  +      A   +             +   +AR 
Sbjct: 137 LFRNNKNEIIESPTQMFERVA--ILVGIGDILYDAQVFDKSG-------NISQSTDEARS 187

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-MPQAFFMRVAMG 327
             E + +FD  +         D+       + L + Y    +  +++   +     +A  
Sbjct: 188 YLEKLDNFDYKFKIG------DYFLNKWHFRSLINHYVTLASKGQMKVSFKDLLTLIAA- 240

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
              K      +  E+++L+++  F+ ++PT+ N+G R  QLS+CF+  +PDD+  I  + 
Sbjct: 241 --KKFDSYADKITEYFDLMTAQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMEKIMKST 298

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
            + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGGKR+GA
Sbjct: 299 SDAALIFKSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGA 358

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               +E WH DVE+F+  +   G       +++   W  + F   +              
Sbjct: 359 NMGIIEAWHPDVEKFITNKTEPG--VLENFNVSVGIW--EDFWNALVNTEDGKYMLRS-- 412

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                                    + K  ++I+A  L   +    +++  P + F D  
Sbjct: 413 -----------------------PRDRKPVKEINAHQLIDLIALSAWKSAEPGLIFFDQI 449

Query: 568 NIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDK 620
           N  +         + ++N C E +L         CNLGSINL+           +FD+ +
Sbjct: 450 NKYNVFAKARQAPLRATNPCGEQSLYPY----ESCNLGSINLVNLVKRQADGEYEFDWQR 505

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
              TIR   R LDN+ID+N + +++   ++   R IGLG+MG    L+ L IPY S E  
Sbjct: 506 YEETIRKTTRFLDNIIDVNHYPVKEIDIASKDSRRIGLGVMGVADLLYKLKIPYNSKEGY 565

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+  +  E ++++++  SV LA+ RG +     + + +G  PI       +         
Sbjct: 566 ELQSKLSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPIAGYYEKPKE-------- 617

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           +    WD L +++K  G+RN     +APT T++ I   S  ++P++  ++ K    G F 
Sbjct: 618 SHCYEWDALIEKIKKHGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVTVGRFF 677

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
             N  +   LK+  L+ + +++ +  + GS+  I  IP  ++ ++ TA +I     + + 
Sbjct: 678 YTNKIVEEVLKEHGLYSDELLAKIADNYGSLKGIPEIPQWMQDVYVTAMDIHWADHLMAQ 737

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKG 918
              Q WI  A +  + +  + + + +   Y  A  +GLK     R  S    V   T + 
Sbjct: 738 GVWQDWIGNAIAKTINMPYDVTAEDVKSAYLLAHELGLKGITVYRDGSRHKQVLHMTSEN 797

Query: 919 VDGKLNAVPVT 929
                   P  
Sbjct: 798 AQKSFEVRPSE 808


>gi|225847949|ref|YP_002728112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643612|gb|ACN98662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 846

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/946 (23%), Positives = 392/946 (41%), Gaps = 148/946 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FD SKI+ AI KA  AV  K  S S       ++L ++ V +L     S
Sbjct: 4   KIIKRDGRVVDFDISKIANAIWKAMQAVGEKDKSLS-------ESLAKKVVEKLESKLSS 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E +QD VE +L+++G  K+ + Y+LY       R  ++  +       K++I+ 
Sbjct: 57  NQIPTVEQVQDIVEETLIEAGLSKVAKAYILY-------REKRAQIR-----KEKMQILN 104

Query: 150 DDGTLI---SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
            D       +F+   L ++V      L    S  V+ E+ K ++  ++      +L++  
Sbjct: 105 KDYIDEVDKAFDINALRVLVSRY---LNKDESGRVV-ESPKQLFQRVAIHVTLPSLLYDE 160

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           R   +K               L++E    +     KA              +Y       
Sbjct: 161 RVFSKK-------------SSLQKESKIKIQDYLGKAR-----------IGKYFLNIYHL 196

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
             L       +   L      ++DF+     L +L    F        E           
Sbjct: 197 EALERLHKRMNKEKL-----MKKDFS---EILNMLTKDEFKDYEKEVDE----------- 237

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
                          +YNL+ S  FM +TP L N G       +CF+  + D L  I   
Sbjct: 238 ---------------YYNLMVSRKFMPNTPALVNFGNPLGMGMACFVLGMEDSLLSIMET 282

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+  A++ +  GG G +++ +R  G  +  T+G S G I F+ + +     + QGG R+G
Sbjct: 283 LKNAAIIFQSGGGCGYNFSTLRPEGDFVRSTHGVSSGPIAFMTLFDKMTDVIKQGGVRRG 342

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A    L + H D+E+F+  +K       +  + N + ++ + F +   +N  + L +P  
Sbjct: 343 ANMGILNSDHPDIEKFVVAKKGN----LQLTNFNISVFLKEDFWEYYKENKPYPLINPR- 397

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                                       ++ + I+    +  ++   +E+  P + F D 
Sbjct: 398 --------------------------NKQIVKYINPKNFFDLIVYQGWESAEPGLLFDDN 431

Query: 567 CN-IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--------D 617
            N      + +G + S+N C E+ L  +      C+LGSINL A               +
Sbjct: 432 INRYNPFLKALGKIESTNPCGEVLLYPN----ESCDLGSINLWAFVEEEYDGEKRVVKIN 487

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           ++ L  T+R AVR LDN++DIN + ++K ++     R IGLG+MG    L  L +PY S 
Sbjct: 488 WEDLEKTVRLAVRFLDNILDINKYPLKKIEERTLKTRKIGLGVMGLADTLFELELPYDSK 547

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E ++  +  MEFI++++   S+E+A++RG++  F  S +  G  P               
Sbjct: 548 EGLDFMERIMEFINYYSKLESIEIAKKRGSFPYFNKSFYKNGNLPFR----------GFY 597

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
              +    W+++ + +K  G+RN+    IAPT +I+ I G S  I+P Y  +Y K    G
Sbjct: 598 EKESWHFDWEKVSQDIKNHGLRNAYTTVIAPTGSISMIAGCSAGIEPVYSLVYEKKVTIG 657

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  VN      +++  L+D+ +I D+  ++GSI NI  IP   K +  TA +I     +
Sbjct: 658 SFYYVNPVFEKFMEREGLFDDNLIKDVVRNNGSIKNIPYIPQRYKNVFKTAKDISGKDHV 717

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV----- 911
           ++ +  QKW+D + S  +    + S +++   Y  A  +G K     R +S   V     
Sbjct: 718 KALASIQKWVDSSVSKTINFPEDVSIEEMKETYLLAHELGCKGLTVYREKSIAGVYTVPQ 777

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECEVC 953
           E+   + V   L    V  P           +         +C  C
Sbjct: 778 EQKEERKVMTSLKDEKVKGPTIYKEITPSFYTQEDYITASEKCPQC 823


>gi|168186577|ref|ZP_02621212.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum C str. Eklund]
 gi|169295443|gb|EDS77576.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum C str. Eklund]
          Length = 764

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 248/821 (30%), Positives = 392/821 (47%), Gaps = 110/821 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K+   +G     + ++ + +V  AC GL+      +  ++     D +S  +++  LI
Sbjct: 2   DIKVKKRNGEYEKLHVEKTKKMVSLACEGLEGCDPLELEIDSRIQFRDCMSTKEIQKILI 61

Query: 204 FSSRTLI--------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            ++   +              +   N+  V AR L   L +E       K  +  ++   
Sbjct: 62  QTAIEKVIYIDKNNHDNISSKKTNINWQYVAARLLAFDLYKEA------KINRDYNYFGY 115

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
             +     R +  G+  + L E+  D ++  L++ ++ +RD  F Y GL++L DRY +  
Sbjct: 116 GDFLYLVKRLVNIGLYGKYLIENYSDEEIKELSDYIEPKRDELFNYEGLKLLNDRYLIKG 175

Query: 309 INGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            NG  +E+PQ  FM +AM LA+ E   K   A +FY+L+S      +TPTL N+GT   Q
Sbjct: 176 FNGEILELPQERFMVIAMHLAIPEGKNKIYYAKKFYDLISKLKMTVATPTLGNAGTPFYQ 235

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF++ V D+L+ I+   Q+ + ++K+ G LG     VR L + I G    S GVIP+
Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFSQVSKHGGALGIYIGKVRALNSEIRGHKNASGGVIPW 295

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ NDTAVAV+Q GKRKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ T+  IPD
Sbjct: 296 IKLYNDTAVAVDQLGKRKGGAAITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSIPD 355

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFR 538
           +FM R+     W+LF P  V  L              KEF   Y   E      +     
Sbjct: 356 IFMTRLLNRESWSLFDPYMVHKLMGYKLEDYFDDEDNKEFTKRYLECEA----NKNLQRD 411

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
            +S + + +K++    ETG P+I F+D  N  +P +H G+++SSNLC EI  N S     
Sbjct: 412 TVSCLDIMKKIMKSAVETGTPFIFFRDTVNRANPNKHRGMIYSSNLCHEIAQNMSESELI 471

Query: 596 --------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
                               +   CNL SINL           ++L   I   +R+LDNV
Sbjct: 472 SEESTYKNGFNEVVSRVRSGDMVTCNLNSINLSKVSR------EELKEAIPLQIRMLDNV 525

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I +N   ++++  ++  +RAIGLG  G+   L    I + S E ++  D   E I++ +I
Sbjct: 526 ISLNKLPVKESSITSDKYRAIGLGTSGYHQYLAKNRIKWESEEHIKEVDALFEDIAYESI 585

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+ELA+E+GAY  F+GS W  G                      +   W +L+  V  
Sbjct: 586 KASMELAKEKGAYPEFEGSEWQSGK--------------YFERRGYNSERWSKLRDDVAK 631

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RN   MA+APT + +NI   +  IDP ++  +++    G FT        +L   + 
Sbjct: 632 YGIRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEE-KKGSFT---PKTAPDLNNDNF 687

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W                            +  A  I+  W I++ + RQK IDQ+QS NL
Sbjct: 688 W---------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNL 720

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Y+  +   K +  +Y ++W  G+KT YY+R++S    E S+
Sbjct: 721 YITPDIKAKDILDMYTESWRQGIKTIYYIRNKSIEMNECSS 761


>gi|161529135|ref|YP_001582961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nitrosopumilus maritimus SCM1]
 gi|160340436|gb|ABX13523.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nitrosopumilus maritimus SCM1]
          Length = 884

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/916 (22%), Positives = 372/916 (40%), Gaps = 135/916 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-NK 88
           ++ KR+G VT+F+  KIS AI KA  A        S   + +   L +  V +L++    
Sbjct: 12  EIRKRSGAVTAFNKDKISNAIYKALAAT-------SKADRGLADQLADNVVNKLVEQGFT 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S     +EDIQD VE +L+ SG+  I + Y++YR ER  +R  +            +K++
Sbjct: 65  STRSPTVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLRDEK------------MKVL 112

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                                   L  VS K                 DL    + +SR 
Sbjct: 113 N--------------------LKALDPVSKKF----------------DLNCLRVLASRY 136

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           L     N    +   + E++                   M            ++ V+   
Sbjct: 137 LFRNGKNEIIESPTQMFERV----------AILVGIGDLMYDAQVFDKSGNTKQDVEEAK 186

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-- 326
            +       L  L        D+ F  +G       +F  +    + +     M+++   
Sbjct: 187 SY-------LEKLDAF-----DYKF-KVGDYFFNKWHFRSLINHYVTLANKGHMKISFKE 233

Query: 327 ----GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
                 A K      +  E+++L+ S  F+ ++PT+ N+G R  QLS+CF+  + D +  
Sbjct: 234 LLTLLAAKKLDGYADKITEYFDLMVSQDFLPNSPTMMNAGGRLGQLSACFVLGMQDGMEE 293

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  +  + A++ K  GG+G +++ +R  G  +  T+G + G + F+ + N     V QGG
Sbjct: 294 IMKSTSDAALIFKSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGG 353

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR+GA    +E WH DVE+F+  +   G       +++   W              +   
Sbjct: 354 KRRGANMGIIEAWHPDVEKFITNKTEPG--VLENFNVSVGVW------------EDFWHA 399

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             +     + L                   + K  ++I+A  L   +    +++  P + 
Sbjct: 400 LVNTSDGNYVLRSP---------------RDKKPVKEINAHQLIDLIALSAWKSAEPGLI 444

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           F D  N  +         + ++N C E +L         CNLGSINL+           +
Sbjct: 445 FFDQINKYNVFAKARQAPLRATNPCGEQSLYPY----ESCNLGSINLVNLVKRQADGTYE 500

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +   TIR   R LDN+ID+N + + +   ++   R IGLG+MG    L+ L IPY 
Sbjct: 501 FDWQRYEETIRKTTRFLDNIIDVNHYPVPEINVASKESRRIGLGVMGVADLLYKLRIPYN 560

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E  E+  +  E ++++++  SV LA+ RG +     + + +G  P+       +    
Sbjct: 561 SKEGYELQSKLSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVAGYYEKPKE--- 617

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                +    WD L +++K  G+RN     +APT T++ I   S  ++P++  ++ K   
Sbjct: 618 -----SHSYEWDALVEKIKQYGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVT 672

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F   N  +   LK+ +L+++ +++ +  + GS+  I+ IP  ++ +  TA +I    
Sbjct: 673 VGRFFYTNKIVEQVLKENNLYNDEILAKIADNYGSLKGIDEIPQWMQDVFVTAMDIHWSD 732

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            + +    Q WI  A +  + +  + + + +   Y  A  +GLK     R  S    V  
Sbjct: 733 HLMAQGVWQDWIGNAIAKTINMPYDVTAEDVKSAYLLAHEIGLKGITVYRDGSRHKQVLH 792

Query: 914 STLKGVDGKLNAVPVT 929
            T +  +   +  P  
Sbjct: 793 MTSENAEKTFDVTPSE 808


>gi|330897025|gb|EGH28546.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 502

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 304/505 (60%), Positives = 372/505 (73%), Gaps = 21/505 (4%)

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
           NTGDDRRRTHDMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE 
Sbjct: 1   NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 60

Query: 528 QA-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                G+IK+F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCT
Sbjct: 61  LTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 120

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           EITLN++ +E AVCNLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +A
Sbjct: 121 EITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQA 180

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           K SN  HR +GLG+MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERG
Sbjct: 181 KNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERG 240

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           AY +F+GSLW +G+ P+DS  +L E R    ++++    L W  ++ RV+  G+RNSN M
Sbjct: 241 AYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIM 299

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DL
Sbjct: 300 AIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 359

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           KY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKK
Sbjct: 360 KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 419

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS-- 942
           LD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P   
Sbjct: 420 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 477

Query: 943 -------------SCTSDTECEVCQ 954
                            + +CE CQ
Sbjct: 478 EAAPAGPAPVPKACAIDEPDCEACQ 502


>gi|294794441|ref|ZP_06759577.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 3_1_44]
 gi|294454771|gb|EFG23144.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 3_1_44]
          Length = 767

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 9   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 68

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 69  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 122

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      ++E   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 123 NFPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 182

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 183 NKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 242

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 243 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 302

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 303 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 362

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+  +              KEF   Y   E+  +   I    +
Sbjct: 363 FMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 418

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 419 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 478

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 479 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 532

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 533 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 592

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G              +       +   W +L   V   G+R
Sbjct: 593 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 638

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 639 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 691

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 692 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 727

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 728 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 761


>gi|294792662|ref|ZP_06757809.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 6_1_27]
 gi|294456561|gb|EFG24924.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. 6_1_27]
          Length = 767

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 246/814 (30%), Positives = 392/814 (48%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 9   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 68

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 69  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 122

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 123 NFPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 182

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K K A +FY+L+S      +TPTL N+GT   QL
Sbjct: 183 NKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 242

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 243 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 302

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 303 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 362

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+  +              KEF   Y   E+  +   I    +
Sbjct: 363 FMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI----E 418

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 419 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 478

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 479 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 532

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 533 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 592

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G              +       +   W +L   V   G+R
Sbjct: 593 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 638

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 639 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 691

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 692 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 727

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 728 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 761


>gi|282849774|ref|ZP_06259158.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula ATCC 17745]
 gi|282580711|gb|EFB86110.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula ATCC 17745]
          Length = 760

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 62  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      ++E   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 116 NFPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+  +              KEF   Y   E+  +   I    +
Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G              +       +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 754


>gi|269798662|ref|YP_003312562.1| ribonucleoside-diphosphate reductase, subunit alpha [Veillonella
           parvula DSM 2008]
 gi|269095291|gb|ACZ25282.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           parvula DSM 2008]
          Length = 760

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 246/814 (30%), Positives = 392/814 (48%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 62  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 116 NFPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K K A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+  +              KEF   Y   E+  +   I    +
Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI----E 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+F+AI AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G              +       +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 754


>gi|238018469|ref|ZP_04598895.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748]
 gi|237864940|gb|EEP66230.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748]
          Length = 776

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 18  EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 77

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 78  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 131

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 132 NFPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 191

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 192 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 251

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 252 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 311

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 312 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 371

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+  +              KEF   Y   E+  +   I    +
Sbjct: 372 FMERMIARENFTLFDPHEILAVKGYALEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 427

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 428 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 487

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 488 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 541

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I+++AI AS+
Sbjct: 542 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYAIKASM 601

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G              +       +   W +L   V   G+R
Sbjct: 602 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 647

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 648 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNNKTFW--- 700

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 701 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 736

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 737 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 770


>gi|307205346|gb|EFN83694.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 701

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/729 (29%), Positives = 375/729 (51%), Gaps = 32/729 (4%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T     + +++ +  +Y  +  R  +  L +E         +K     +  LY
Sbjct: 1   MTTVELDTLAADIAASMVNQHMDYEILAGRIAISNLHKET--------KKVFSEVITQLY 52

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                       +    + +++      L + + Y+RDF + Y   +IL +++ L +NG 
Sbjct: 53  HGNLSIMNRRLPRISEKYYTIIQEHADRLNSAIIYDRDFNYSYTAFKILENKHLLRLNGK 112

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E PQ   MRVA+ +   + +    A+E YNLLS  + + +  TL ++ T   Q++S F
Sbjct: 113 VVERPQHMLMRVAVSIHNDDVDN---AIETYNLLSKQYIVHAAQTLNSACTVKQQMASSF 169

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T+  D + GI  +L+  A+L  ++G +G +   +R     I GT G S G++P L+  
Sbjct: 170 LLTMSEDSIDGILDSLERVAVLCHHNGDIGFNVHCIRAKNTPIRGTGGVSNGLVPMLRAY 229

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           N +          +G +  YLE WH D+ +FL+L+++ GD++ R  DM  A W PD+FM+
Sbjct: 230 NTSI-PTVCRKNIEGPITVYLEPWHSDIYQFLELKRDIGDEQLRAKDMFYALWTPDIFMR 288

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV  +A W+L  P E   L D++G EFE  Y  YE      E +  +++ A  LW  +  
Sbjct: 289 RVFDDADWSLMCPHECPGLIDVWGDEFEALYIRYEE-----ENRYRKQVKARDLWVFITQ 343

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG--SINLLA 609
           +  +TG P+I +KD CN++S QQ++G ++  +  TE+   S+S+E A C+L   ++++  
Sbjct: 344 LQIQTGTPYIVYKDHCNLKSNQQNLGTINCGSFSTEVIQYSASDEIAACHLATIAVDMFV 403

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           +     +D+ KL   ++     LD +ID+N + +E+   S +  RAIG+   G   A  L
Sbjct: 404 NSTTKTYDFSKLKKVVKIVTYNLDKMIDVNLYPLEEVTFSAYRQRAIGISASGLADAFIL 463

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  P+ S EA ++  +  E   + A+ AS E+A E G Y++++GS   +G+   +     
Sbjct: 464 MRYPFESKEAKKLNVQIFETFYYGALEASCEMAIEDGPYATYEGSPVSKGILQYEMWNAK 523

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    WD LK ++   G+RNS  +A      +A + G ++S+ P   N+
Sbjct: 524 P----------TDLWDWDTLKAKIAKYGVRNSLLIAQTSDTFMAQMLGNNESVGPYTSNI 573

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
                 S  F  V   L+ +L ++ LW E M + +  + GSI +I+ IPDDLK ++ TA+
Sbjct: 574 CTMHASSKLFPYVKKHLLRDLIEKGLWSEDMCNKIISNGGSIQDIDDIPDDLKLLYKTAW 633

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK-TTYYLRSRSA 908
           E+    + E A+ R  +IDQ+Q LN+++ +PS  KL  ++  AW +GLK + Y+ ++   
Sbjct: 634 EMPQKRIFEMAAARGPFIDQSQCLNVHMKDPS-DKLTSMHFYAWEIGLKSSMYHFKTEDF 692

Query: 909 TSVEKSTLK 917
           T+  +   K
Sbjct: 693 TNCTQVKEK 701


>gi|281339148|gb|EFB14732.1| hypothetical protein PANDA_021921 [Ailuropoda melanoleuca]
          Length = 500

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 194/513 (37%), Positives = 297/513 (57%), Gaps = 18/513 (3%)

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  
Sbjct: 1   RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 60

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P++ +
Sbjct: 61  PNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLY 115

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLA 622
           KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ KLA
Sbjct: 116 KDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLA 175

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  L+  P+ SPEA  +
Sbjct: 176 EVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLL 235

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS +LA+E G Y +++GS   +G+   D   +            T 
Sbjct: 236 NKQIFETIYYGALEASCDLAREHGPYETYEGSPVSRGILQYDMWNVTP----------TD 285

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +V
Sbjct: 286 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 345

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+ +L +R LW+E M + +   +GSI +I  IPDDLK+++ T +EI    +++ A+ 
Sbjct: 346 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 405

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD- 920
           R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R A +  + TL     
Sbjct: 406 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKL 465

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                    +     ++  +  S  +  EC +C
Sbjct: 466 KDKEKATKEEEEKERNTAAMVCSLENREECLMC 498


>gi|303230488|ref|ZP_07317247.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514854|gb|EFL56837.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 760

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 62  QTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 116 NFPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+  +              KEF   Y   E+  +   I    +
Sbjct: 356 FMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDPNLHGI----E 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G              +       +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLASDVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSIEMDE 754


>gi|289596835|ref|YP_003483531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289534622|gb|ADD08969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 785

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/948 (23%), Positives = 387/948 (40%), Gaps = 189/948 (19%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTV 80
             E+ + ++VIKR+G +  F   KI +AIMKA  ++ G G   + RV + +++ + E  V
Sbjct: 1   MSEEGEVMKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKESRV 60

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            R+           +E IQD VE +LM  G+  + + Y+LYREER  +R A+        
Sbjct: 61  ERIT----------VEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKVIGVQDD 110

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           +   +  +                 V EA   L+D +  ++  ET + M++         
Sbjct: 111 LKLTVNAIK----------------VLEARYLLKDENGNVI--ETPRQMFE--------- 143

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               ++R L              L++                                  
Sbjct: 144 ---RTARYLA-------------LVDIFY------------------------------- 156

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E+ +  +   +     D+      L    +F                             
Sbjct: 157 EDDIYDKEGKQKERKIDVEEKPEFLSI-WEFNMLKRAFTYFSK---------------EG 200

Query: 321 FMRVAMGLALKETEKEKRAVE-----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +M+V     L   + +   +E     F  ++    ++ ++PTL N+ T+  QLS+CF+  
Sbjct: 201 YMKVDFSYVLDSLKSKWDKIERVKNKFAEVMLHRKYVPNSPTLMNANTKLGQLSACFVLP 260

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD + GIF A++  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +   
Sbjct: 261 VPDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVAT 320

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             + QGGKR+GA    L   H D+ EF+    +   + +   + N +  + D FM  + +
Sbjct: 321 DVIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDALLR 377

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +  + L +P                              +  ++I A  +W  ++T  ++
Sbjct: 378 DDYYPLRNPR---------------------------NGEEVKRIKARQVWDLIITQAWK 410

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           TG P + F D  N + P +H+G + S+N C E  L         CNLGSINL     N +
Sbjct: 411 TGDPGVIFIDEVNRKHPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGK 466

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +D L  T+ TAV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY 
Sbjct: 467 IKWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYD 526

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAVE+A++ M+FI+  +  AS++LA++RG + +++GS W              ++R+ 
Sbjct: 527 SEEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNA 577

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                                + I G S SI+P +   +++  +
Sbjct: 578 TTTTIAPTGTI--------------------------SIIAGTSSSIEPLFAIAFIRRVL 611

Query: 796 SG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            G +   VN      +K+  L+ E ++  +    GS+ +I+ +P+++K++  TA +IDP+
Sbjct: 612 DGQELLEVNPLFEEIMKREGLYSEELMHKVAET-GSVQHIDDVPENIKRLFRTAHDIDPV 670

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA----- 908
           W +   +  QK++D A S  + L  + S   ++  Y  AW +  K     R  S      
Sbjct: 671 WHVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSKNVQVI 730

Query: 909 ------TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
                 T  E    K  +   NA+     N       +    T D  C
Sbjct: 731 YKGTKTTKQEIKEEKKKESSANALIDLTFNVKVEEKYLKVDSTFDPAC 778


>gi|322379521|ref|ZP_08053886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS1]
 gi|322380284|ref|ZP_08054500.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS5]
 gi|321147267|gb|EFX41951.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS5]
 gi|321148076|gb|EFX42611.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           suis HS1]
          Length = 798

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 307/821 (37%), Positives = 435/821 (52%), Gaps = 114/821 (13%)

Query: 144 KLKIMMDDGTLI--SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           ++     + + +      ++++ I+ +A  GL  +  +   +E    ++   S  DL T+
Sbjct: 16  EMTATKRNESKVLPEQQIEQIKQIIHKATEGLTGLDKQEFETEA---LHCN-STQDLFTS 71

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +   I+ + PN++ V AR  LE L ++V       P +      +           
Sbjct: 72  LIKMAVDRIDVDAPNWSFVAARLFLEDLYQKVSGFSGYLPLRVYLERGES---------- 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQA 319
               K R++      FDL  L + LK ERD+ F YLG++ LYDRY L       IE+PQ 
Sbjct: 122 ----KGRIVRGFKEKFDLELLDSALKPERDWQFNYLGIKTLYDRYLLKDESNHPIELPQH 177

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
            FM +AM LA  E++   RA+EFY +LS F  MC+TPTL N+ T + QLSSC++ + PD+
Sbjct: 178 MFMAIAMFLAQNESDPNARALEFYGVLSRFELMCATPTLANARTPNHQLSSCYIGSTPDN 237

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GIF + ++ A+L+KY GG+G D++ VR LG+ I G    S GVIPFLK+AND AVAV+
Sbjct: 238 IEGIFDSYKDMALLSKYGGGIGWDFSQVRCLGSFIDGHKSASAGVIPFLKIANDVAVAVD 297

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G RKGA+  YLE WH+D+ EF+DLRKN+GD+RRR HD+  A WI DLFM+RV  +  W
Sbjct: 298 QLGTRKGAIAVYLEIWHMDILEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEADQEW 357

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           TLF P    DL   +G EFE  Y  YE+ +      V  +I A  LW+K+LT  FETG P
Sbjct: 358 TLFDPYRCQDLTQCFGAEFEAKYLAYEQDSHM----VKHRIKARDLWKKILTNYFETGLP 413

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC------------------- 600
           ++ FKD  N  +P  HVG++ SSNLCTEI  N+SS    +                    
Sbjct: 414 FLGFKDNANRANPNGHVGMIRSSNLCTEIYQNTSSSHYKMQIDFTDGSREFFEELEEVCT 473

Query: 601 --------------------------------NLGSINLLAHFANNQFDYDKLASTIRTA 628
                                            +   NL +   +       L   +  A
Sbjct: 474 DTGITKRANKLSSNDSLGGKKIFMASKVAEEGMVAVCNLASLNLSKINSQQDLERVVPIA 533

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR+LDNVID+N + I KAK++N   RAIGLG+MG    L    I + S E     D  +E
Sbjct: 534 VRMLDNVIDLNFYPISKAKETNLKSRAIGLGVMGEAQMLAEARIKWGSAEHALKMDFLLE 593

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            +S+ AI AS +LA ERG+Y+ F+GS W QG+FPID I    +           R  W  
Sbjct: 594 KMSYEAIKASSQLAIERGSYAYFEGSAWSQGIFPIDYIKQEVKEISPHK----PRCDWKS 649

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LKK+VK  G+RN   MAIAPT++I+ + G +Q+I+P YQ  +++ N+SG   VV      
Sbjct: 650 LKKKVKEQGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWLEENLSGLIPVV------ 703

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                    +  +  +    + +A++ID   +I+ A+ RQKWID
Sbjct: 704 -------------------------VPSLSLETWPFYTSAYDIDAKDMIKLAAVRQKWID 738

Query: 869 QAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           Q QSLNL+L   + SGK L  IY  AW +GLK+TYYLR++S
Sbjct: 739 QGQSLNLFLRPKKASGKLLHEIYYLAWKLGLKSTYYLRTQS 779


>gi|297837607|ref|XP_002886685.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332526|gb|EFH62944.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 688

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/642 (35%), Positives = 339/642 (52%), Gaps = 53/642 (8%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y+RDF +++ G + L   Y L ++G  +E PQ   MRV +G+ +   E    A++ Y+
Sbjct: 82  IVYDRDFDYDFFGFKTLERLYLLKVHGKVVERPQHMLMRVVVGIHM---EDIDSAIKTYH 138

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L+S   F  ++PTLFN+GT  PQLSS FL  + D    I   LQ+  ++ K +G +    
Sbjct: 139 LMSQRLFTHASPTLFNAGTPRPQLSSSFLICMRD--DSIESTLQKCDVIRKSAGSISVSV 196

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             ++G    +   +                      GGK+ G    YLE WH D+ EFL 
Sbjct: 197 HNIQGTNGVVPMLDVDQG------------------GGKKNGPFAVYLEPWHADIFEFLK 238

Query: 465 LRKNTGD-DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           ++KN G     +   M  A WIPDLFM+RV  +  W+LF P+E   L D +G EFE  Y 
Sbjct: 239 IQKNHGKVQNSQEEHMAIALWIPDLFMERVKHDGKWSLFCPNEAPGLADCWGTEFERLYT 298

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            YER     E K  +   A   +  +LT   ETG P++ FKD CN +S QQ++G + SS+
Sbjct: 299 KYER-----EGKAKKVFPAQEPFFDILTSQLETGMPYMLFKDSCNRKSNQQNLGTIKSSS 353

Query: 584 LCTEITLNSSSEETAVCNLGSINLLA-------------HFANNQFDYDKLASTIRTAVR 630
           LCT +   +S  ET VCNL SI L                  +  FDYDKLA        
Sbjct: 354 LCTGVIEYTSPTETTVCNLASIALDVPLDSHPSKLAGSLRSKSRYFDYDKLAEVTAIVTN 413

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LD +ID N + +E A+ SN  HR IG+G+ G   A  LL +P+ SPEA ++  +  E I
Sbjct: 414 DLDRIIDGNYYPVETAETSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQKLNKDIFETI 473

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
            +HA+ AS ELA    AY ++KGS   +G+   D   +    R            WD L+
Sbjct: 474 YYHALKASSELAARNDAYETYKGSPMSKGILQPDMWNVTPSNR----------WDWDFLR 523

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           + +   G+RNS  +++ PTA+ + I G ++S +P   N+Y    +SG+  +VN  L+++L
Sbjct: 524 EMISKNGVRNSLLVSLMPTASTSQILGNNESFEPYTSNIYSHRGLSGESILVNKHLLHDL 583

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +  LW   +   +   +GSI N+  IPDD+K I+ TA+EI    +++ A  R  +IDQ+
Sbjct: 584 TEMGLWTPTLKEKIIDENGSIRNVPEIPDDMKAIYRTAWEIKQRTVVDMAVDRGCYIDQS 643

Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
           Q+LN+ L+EPS +KL  ++   W  GLKT  +YLRSR+ T V
Sbjct: 644 QTLNINLEEPSYQKLTSLHFYTWTKGLKTGMHYLRSRATTMV 685


>gi|303228691|ref|ZP_07315516.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516671|gb|EFL58588.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 760

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/814 (29%), Positives = 393/814 (48%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 62  QTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 116 NFPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGKNKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+  +              KEF   Y   E+ ++   I    +
Sbjct: 356 FMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDSNLHGI----E 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINKDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G              +       +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLASDVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 754


>gi|313894419|ref|ZP_07827984.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313441243|gb|EFR59670.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 760

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/814 (29%), Positives = 390/814 (47%), Gaps = 106/814 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I   DG     + ++ + ++  AC GL       +  +      DG++  +++  L+
Sbjct: 2   EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELELDAKLQFVDGMTTKEIQKTLV 61

Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   +             +   ++  V AR  L  L +E          +        
Sbjct: 62  QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            +P      +EE   A          +L  L + +K +RD+ F Y GL++L DRY +   
Sbjct: 116 NFPNLVHMLVEEKKYADFFVSEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
           N    E+PQ  FM +AM LAL E   K + A +FY+L+S      +TPTL N+GT   QL
Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++ V D+L+ I+    + + ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q GKRKG     L+ WH D  EF++LR N GDDRR+ HD+  A  +P++
Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355

Query: 489 FMKRVTQNAGWTLFSPDEV---------SDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+     +TLF P E+                 KEF   Y   E+  +   I    +
Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYALEDYFDTEDEKEFTKRYIECEQDPNLHGI----Q 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591
           + A+ + +K++    ETG P+I F+D  N  +P +H G++++SNLC EI  N        
Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471

Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                       +++ +   CNL SI+L           ++L   I   +R+LDNVI IN
Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +++ ++  +RAIGLG  G+   L    I + S E +E+AD+  E I++++I AS+
Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASM 585

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+GAY +FKGS W+ G                      +   W +L   V   G+R
Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------AYFTRRGYTSDRWKQLAADVAKYGIR 631

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+APT + +NI   +  IDP ++  +++    G FT        +L  +  W   
Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNNKTFW--- 684

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                   ++  A  ID  W I++   RQ+ IDQAQS NLY+  
Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   K++  +Y +A+  G+KT YY+R++S    E
Sbjct: 721 QMKAKEILDLYVEAYKQGVKTIYYIRNQSLEMDE 754


>gi|254168705|ref|ZP_04875547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197622331|gb|EDY34904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 796

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 222/950 (23%), Positives = 387/950 (40%), Gaps = 189/950 (19%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQ 78
               E+ + ++VIKR+G +  F   KI +AIMKA  ++ G G   + RV + +++ + E 
Sbjct: 10  RSMSEEGEVMKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKES 69

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V R+           +E IQD VE +LM  G+  + + Y+LYREER  +R A+      
Sbjct: 70  RVERIT----------VEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKVIGVQ 119

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
             +   +  +                 V EA   L+D +  ++  ET + M++       
Sbjct: 120 DDLKLTVNAIK----------------VLEARYLLKDENGNVI--ETPRQMFE------- 154

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                 ++R L              L++                                
Sbjct: 155 -----RTARYLA-------------LVDIFY----------------------------- 167

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             E+ +  +   +     D+      L    +F                           
Sbjct: 168 --EDDIYDKEGKQKERKIDVEEKPEFLSI-WEFNMLKRAFTYFSK--------------- 209

Query: 319 AFFMRVAMGLALKETEKEKRAVE-----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
             +M+V     L   + +   +E     F  ++    ++ ++PTL N+ T+  QLS+CF+
Sbjct: 210 EGYMKVDFSYVLDSLKSKWDKIERVKNKFAEVMLHRKYVPNSPTLMNANTKLGQLSACFV 269

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + GIF A++  AM+ K  GG G  ++ +R  G  +  T G + G + F++V + 
Sbjct: 270 LPVPDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDV 329

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               + QGGKR+GA    L   H D+ EF+    +   + +   + N +  + D FM  +
Sbjct: 330 ATDVIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDAL 386

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  + L +P                              +  ++I A  +W  ++T  
Sbjct: 387 LRDDYYPLRNPR---------------------------NGEEVKRIKARQVWDLIITQA 419

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++TG P + F D  N + P +H+G + S+N C E  L         CNLGSINL     N
Sbjct: 420 WKTGDPGVIFIDEVNRKHPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVEN 475

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            +  +D L  T+ TAV  +DNVID N + + +  +     R IGLG+MG+   L  L IP
Sbjct: 476 GKIKWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIP 535

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S EAVE+A++ M+FI+  +  AS++LA++RG + +++GS W              ++R
Sbjct: 536 YDSEEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIR 586

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           +                                      + I G S SI+P +   +++ 
Sbjct: 587 NATTTTIAPTGTI--------------------------SIIAGTSSSIEPLFAIAFIRR 620

Query: 794 NMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            + G +   VN      +K+  L+ E ++  +    GS+ +I+ +P+++K++  TA +ID
Sbjct: 621 VLDGQELLEVNPLFEEIMKREGLYSEELMHKVAET-GSVQHIDDVPENIKRLFRTAHDID 679

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA--- 908
           P+W +   +  QK++D A S  + L  + S   ++  Y  AW +  K     R  S    
Sbjct: 680 PVWHVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSKNVQ 739

Query: 909 --------TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
                   T  E    K  +   NA+     N       +    T D  C
Sbjct: 740 VIYKGTKTTKQEIKEEKKKESSANALIDLTFNVKVEEKYLKVDSTFDPAC 789


>gi|326792203|ref|YP_004310024.1| ribonucleoside-diphosphate reductase, subunit alpha [Clostridium
           lentocellum DSM 5427]
 gi|326542967|gb|ADZ84826.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           lentocellum DSM 5427]
          Length = 763

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 252/817 (30%), Positives = 390/817 (47%), Gaps = 109/817 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++I   DG L    + + + +VE AC  L       +  +      D ++  +++  LI
Sbjct: 2   TIEIRKRDGRLEPLCASKTKKMVEFACRNLAGCDPIELELDAKIQFRDKMTTREIQKVLI 61

Query: 204 FSSRTLIEKEP-------------NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++   + +               N+  V AR L+  L +E          +   H    
Sbjct: 62  QTAIEKVIQTNEDAYGNQVKQTYINWQYVAARLLVYDLYKEA------AISRGYTHFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
            Y   +   I  G+    L  +  D ++  LA  +  ERD  F Y G+++L DRY +   
Sbjct: 116 DYKALYEELIHRGLYGDYLKMNYTDTEVEELAAYINPERDDLFNYEGIKLLADRYLVKGY 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
            G  +E+PQ  FM +AM LA+ E  ++   A +FY+LLS      +TPTL N+GT   QL
Sbjct: 176 KGEVMELPQERFMTIAMHLAIPEGEKRVYYAKQFYDLLSQLKMTVATPTLANAGTAFYQL 235

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF++TV D+L+ I+   Q+ A ++K+ G LG     VR L + I G    S GVIP++
Sbjct: 236 SSCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYLGKVRALNSEIRGHKRSSGGVIPWV 295

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ NDTAVAV+Q G+RKG+    L+ WH D+ +FL+L+ N GDDRR+ HD+  +  IPDL
Sbjct: 296 RLYNDTAVAVDQLGRRKGSASVTLDVWHSDLYDFLELKTNNGDDRRKAHDIFPSISIPDL 355

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLY---------GKEFEIAYENYERQADRGEIKVFRK 539
           FM+R+ +   W+LF P  V      Y          K F   Y   E       I     
Sbjct: 356 FMERLLKRENWSLFDPYMVHKEMGFYLEDYFDDEEDKAFTTRYLACEANEKLERI----T 411

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--- 596
           I  + + +K++    ETG P+I F+D  N  +P +H+G++++SNLC EI  N S+ E   
Sbjct: 412 IPTLDIMKKIMISAVETGTPFIFFRDTVNRANPNKHLGMIYASNLCHEIAQNMSASELIA 471

Query: 597 --------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNL S NL           ++    I   +R+LDNVI
Sbjct: 472 EGTKEVNGEMEVYSRIKPGDMVTCNLNSTNLGRVER------EEFKDIIPLQIRMLDNVI 525

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +N   +++A+ ++  +RAIGLG  G+   L   HI + S E +++ADE  E +++ AI 
Sbjct: 526 TLNQLPVKEAQLTSDRYRAIGLGTSGYHHYLVNHHISWESEEHLKVADELFEDMAYEAIR 585

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S+ELA+E+GAY  F+GS W  GV                     +   W +LK+ V   
Sbjct: 586 GSMELAKEKGAYPGFEGSEWQTGV--------------YFERRGYTSPRWQKLKEEVAKY 631

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN   MA+APT + +NI   +  IDP ++  +++    G FT        +L   + W
Sbjct: 632 GLRNGYIMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKAAPDLCAENFW 687

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                      ++  A  I+  W I++   RQ+ IDQAQS NLY
Sbjct: 688 ---------------------------LYKEAHHINQSWSIKACGIRQRHIDQAQSFNLY 720

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +  E   K +  +Y  AW  G+KT YY+R++S  + E
Sbjct: 721 VTPEVKAKDILQMYIDAWQEGVKTLYYVRNQSLETDE 757


>gi|298707147|emb|CBJ29920.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 821

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/707 (28%), Positives = 332/707 (46%), Gaps = 53/707 (7%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDG 192
            + +   AP + ++  DG        ++   +   C GL +  +   +V  +  + +Y G
Sbjct: 163 EEGERGGAPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSG 222

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++  +L+T    +   +  + P+YA++ AR  +  L+R    +     ++        L+
Sbjct: 223 VTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFADTVEE--------LH 274

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
                +   +          ++  +   +  ++K+ERDF+ ++ G + L   Y L +   
Sbjct: 275 AYVDPKTGRQAGYISDEVHEIVMKNRDLIDAEVKHERDFSLDFFGFKTLERAYLLKLGDK 334

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +E PQ  FMR+A+G+     E  + A E Y+L+S   F+ ++PTLF++GT  PQLSSCF
Sbjct: 335 VMERPQYMFMRIAIGIHG---EDLEAAFETYHLMSEKWFIHASPTLFHAGTCQPQLSSCF 391

Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           L T   D + GI+  L++   +   +G +             I         +       
Sbjct: 392 LLTTKEDSIAGIYDTLKQWHSVGAGAGFVLAVVVSSSVCVGSISVRANLPTFLCSPRLKI 451

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +  +   +                       L L            D+    WIPDLFM+
Sbjct: 452 DPVSCPCSHQPMFP-----------------LPLCTQPL-----KRDLFYGLWIPDLFME 489

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV Q+  W+L  P +   L + +GKEFE  Y  YER     E K  RK+ A  LW  +L 
Sbjct: 490 RVEQDGEWSLMCPSQCPGLSECWGKEFEELYTKYER-----EGKYMRKVRAQDLWFAILD 544

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG+P++ +KD CN +S  +H+G + SSNLCTEI   +   E AVCNLGS+ L    
Sbjct: 545 AQTETGNPYMMYKDACNRKSNHKHLGTIQSSNLCTEIVEYTDPGEVAVCNLGSVVLPKFV 604

Query: 612 ANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           + +   FD+ +L    +  VR L+ +ID+N + +E+A+ SN  HR +G+G+ G   A   
Sbjct: 605 SEDGKSFDHQRLFEVTKVFVRNLNKIIDVNWYPVEEAQHSNARHRPMGIGVQGLADAFIK 664

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + +P+ S  A  +  +  E + F A++AS ELA++ G Y +F+GS   +G+F  D  G  
Sbjct: 665 MRMPFESEGARALNRDIFETMYFAAMTASCELAEKEGPYETFEGSPVSKGIFQFDMWGET 724

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              R            W  L+ RV   G+RNS  +A  PTA+ A I G ++ I+P   NL
Sbjct: 725 PSDR----------WDWASLRTRVAKHGVRNSLLLAPMPTASTAQILGFNECIEPYTSNL 774

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           Y +   +G+F VVN  L  +L +  LW  ++ + L    GSI +I  
Sbjct: 775 YARRVKAGEFIVVNPHLFTDLMEMGLWSPSVRNQLMASGGSIASIAG 821


>gi|51891460|ref|YP_074151.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855149|dbj|BAD39307.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 782

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 253/812 (31%), Positives = 390/812 (48%), Gaps = 84/812 (10%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
           A  +  +   P   +L +++D    ++     L  +V  AC  +    +   ++E    +
Sbjct: 18  AISNAVRPAQPYQGELNMLLD--ERVNVPEIDLTELVVSACRSIYPERASEFIAELRPLL 75

Query: 190 YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +     S         +      +EP++  V AR  L+KL  E          +  + + 
Sbjct: 76  HATTDRSQQMDLAARLAAEKTSVEEPDWQYVAARLYLQKLYGEAARNRG--YHQPGYGDF 133

Query: 249 QCLYPEYFCRYIE--EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
             L  +      E    V    + E+  + ++  L   ++ ERD  F Y+GL  L DRY 
Sbjct: 134 YELVRQLHAMGDEAGNRVYGAYMIEAYSEEEIRELGRYIRPERDELFTYVGLLHLADRYL 193

Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           +   +G  +E+PQ  +M +AM LA  E+++   A  FY++LS      +TPT  N+ T  
Sbjct: 194 IKGFHGEILELPQERYMHIAMHLASVESDRVTWAKRFYDVLSRQEMTVATPTFRNAATPL 253

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           PQLSSCF+ TV D L  I+   Q  A ++K+ GG+G     +R  G+ I G  G + GVI
Sbjct: 254 PQLSSCFIDTVDDSLQSIYDTNQSFAQVSKHGGGMGIYIGKLRARGSAIRGRKGAAAGVI 313

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P+++  NDTAVAV+Q G RKGAV  +L+ WH ++ EFL L+ N GDDR R HD+     +
Sbjct: 314 PWVRNYNDTAVAVDQLGARKGAVSIWLDVWHKEIFEFLALKLNNGDDRMRAHDIFPGVCV 373

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           PD FM+ V Q+A W LF P EV         D +G+E+E  Y      A   ++     +
Sbjct: 374 PDAFMRAVEQDADWHLFCPHEVRTEMGFSLEDAWGEEWERRYRLCVEAAHADKLDAT-VV 432

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595
            A  + + ML   +ETG P++ F+D  N  +P +H G+V+ SNLCTEI  N S       
Sbjct: 433 RARQVAKAMLKSQYETGGPFLFFRDTVNRLNPNKHAGMVYCSNLCTEIAQNQSPTRLIEK 492

Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                         +  VCNL SINL           +K+A  +  A+R+LDNVID+N +
Sbjct: 493 TDDGEVITYRWQPGDFVVCNLASINLSKVHT-----EEKIAEVVPLAIRMLDNVIDLNFY 547

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +AK +N  +RAIGLG+ G+   L  L I + S + +  ADE  E ++++A+  S+EL
Sbjct: 548 PVPQAKITNKKYRAIGLGVHGYHQMLAELGIHWESEDHLRKADEVFELLNYYAVKTSIEL 607

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A E+G Y   KGS W+ G              +  A+       W  L+++   +G+RN+
Sbjct: 608 AAEKGCYPLCKGSDWETG--------------EYFALRGYESDRWQALRRQAAEVGLRNA 653

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +AIAPT++ + +CG + S+DP Y  +Y +        +                    
Sbjct: 654 YLLAIAPTSSTSLLCGTTASVDPIYDRVYNEGKKDQVIPLAAP----------------- 696

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
                          +       +  A +ID  W I +A  RQ+ IDQ+QS NLY+  + 
Sbjct: 697 --------------GLSPKTYLYYKPAHQIDQTWSIRAAGVRQRHIDQSQSFNLYIRPDI 742

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            G+    +Y QAW  GLKT YY+RSRS    E
Sbjct: 743 KGRDFLNLYMQAWKNGLKTVYYVRSRSLEVTE 774


>gi|254168812|ref|ZP_04875653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197622249|gb|EDY34823.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 796

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 220/947 (23%), Positives = 385/947 (40%), Gaps = 187/947 (19%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             E+ + ++VIKR+  +  F   KI +AIMKA  ++ G         ++  + +T + V 
Sbjct: 12  MSEEGEVMKVIKRDSRIVDFSEDKIFQAIMKAMNSIGGYS-------EEDAQRVTWKVVE 64

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           ++ +       + +E IQD VE +LM  G+  + + Y+LYREER  +R A+        +
Sbjct: 65  KIKESRVER--ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKVIGVQDDL 122

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              +  +                 V EA   L+D +  ++  ET + M++          
Sbjct: 123 KLTVNAIK----------------VLEARYLLKDENGNVI--ETPRQMFE---------- 154

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++R L              L++                                  E
Sbjct: 155 --RTARYLA-------------LVDIFY-------------------------------E 168

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           + +  +   +     D+      L    +F                             +
Sbjct: 169 DDIYDKEGKQKERKIDVEEKPEFLSI-WEFNMLKRAFTYFSK---------------EGY 212

Query: 322 MRVAMGLALKETEKEKRAVE-----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           M+V     L   + +   +E     F  ++    ++ ++PTL N+ T+  QLS+CF+  V
Sbjct: 213 MKVDFSYVLDSLKSKWDKIERVKNKFAEVMLHRKYVPNSPTLMNANTKLGQLSACFVLPV 272

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
           PD + GIF A++  AM+ K  GG G  ++ +R  G  +  T G + G + F++V +    
Sbjct: 273 PDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATD 332

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            + QGGKR+GA    L   H D+ EF+    +   + +   + N +  + D FM+ + ++
Sbjct: 333 VIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMEALLRD 389

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             + L +P                              +  +KI A  +W  ++T  ++T
Sbjct: 390 DYYPLRNPR---------------------------NGEEVKKIKARQVWDLIITQAWKT 422

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P I F D  N R P +H+G + S+N C E  L         CNLGSINL     N + 
Sbjct: 423 GDPGIIFIDEVNRRHPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGKI 478

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            +D L  T+ TAV  +DNVID N + + +  +     R IGLG+MG+   L  L IPY S
Sbjct: 479 KWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDS 538

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EAVE+A++ M+FI+  +  AS++LA++RG + +++GS W              ++R+  
Sbjct: 539 EEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNAT 589

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                                               + I G S SI+P +   +++  + 
Sbjct: 590 TTTIAPTGTI--------------------------SIIAGTSSSIEPLFAIAFIRRVLD 623

Query: 797 G-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           G +   VN      +K+  L+ E ++  +    GS+ +I+ +P+++K++  TA +IDP+W
Sbjct: 624 GQELLEVNPLFEEIMKREGLYSEELMHKVAET-GSVQHIDDVPENIKRLFRTAHDIDPVW 682

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA------ 908
            +   +  QK++D A S  + L  + S   ++  Y  AW +  K     R  S       
Sbjct: 683 HVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIY 742

Query: 909 -----TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
                T  E    K  +   NA+     N       +    T D  C
Sbjct: 743 KGTKTTKQEIKEEKKEESSANALIDLTFNVKVDEKYLKVDSTFDPAC 789


>gi|319765946|ref|YP_004131447.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. Y412MC52]
 gi|317110812|gb|ADU93304.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y412MC52]
          Length = 785

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 263/805 (32%), Positives = 393/805 (48%), Gaps = 92/805 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++ +   + ++   L   
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L +L RE         +     E    +        
Sbjct: 91  AILEGLSYIDEDEPDWTFVCARLYLRQLYREAARQRGYDER-----ERYGDFYSLLVALT 145

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           E+GV + LL E     ++  +   L  E+D  F Y+GL+ L DRY          E+PQ 
Sbjct: 146 EQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYELPQE 205

Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L + E    + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 206 RFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 265

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 266 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 325

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q  
Sbjct: 326 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 385

Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547
            W LF P EV  +     ++          F   Y     ++   + K    + A+ + +
Sbjct: 386 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSKEK----VPAIEVMK 441

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501

Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +         E R   +      L WD LK+ V   GMRN   MAIAP
Sbjct: 617 PAFPGSDWQTGAYF--------ERRGYESHGE---LDWDRLKQDVARYGMRNGYIMAIAP 665

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +        V       +L ++  W            
Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 709

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  AW  GLKTTYY+RS S T  E
Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGTIDE 779


>gi|297530898|ref|YP_003672173.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. C56-T3]
 gi|297254150|gb|ADI27596.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. C56-T3]
          Length = 785

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 261/802 (32%), Positives = 389/802 (48%), Gaps = 92/802 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++ +   + ++   L   
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L +L RE         +     E    +        
Sbjct: 91  AILEGLSYIDEDEPDWTFVCARLYLRQLYREAARQRGYDER-----ERYGDFYSLLVALT 145

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           E+GV +  L E     ++  +   L  E+D  F Y+GL+ L DRY          E+PQ 
Sbjct: 146 EQGVYSPFLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYELPQE 205

Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L   E    + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 206 RFLVIAMTLMANEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 265

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 266 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 325

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q  
Sbjct: 326 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 385

Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547
            W LF P EV  +     ++          F   Y     +    + K    + A+ + +
Sbjct: 386 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSKEK----VPAIEVMK 441

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501

Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +         E R   +      L WD LK+ V   GMRN   MAIAP
Sbjct: 617 PAFPGSDWQTGAYF--------ERRGYESHGE---LDWDRLKQDVARYGMRNGYIMAIAP 665

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +        V       +L ++  W            
Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 709

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754

Query: 888 IYRQAWLMGLKTTYYLRSRSAT 909
           ++  AW  GLKTTYY+RS S T
Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGT 776


>gi|160881348|ref|YP_001560316.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           phytofermentans ISDg]
 gi|160430014|gb|ABX43577.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           phytofermentans ISDg]
          Length = 764

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 243/818 (29%), Positives = 387/818 (47%), Gaps = 110/818 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I   + T      ++ + ++  AC GL+      +  +      DG+S  +++  L+
Sbjct: 2   DIMIKKRNQTYEPLCVEKTKRMIAFACEGLEGCDPIELELDARIQFVDGMSTKEIQKMLV 61

Query: 204 FSSRT-------------LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            ++               + E   N+  V AR  +  L +E         ++   H    
Sbjct: 62  QTAIEKVIHTKKDEFGNIMRETHTNWQYVAARLFVFDLYKEA------AIERHYKHFGYG 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI- 309
            +       +EE +    L ++    ++  L   +K ERD+ F Y G+++L DRY +   
Sbjct: 116 DFLNLVNSLVEEELYGSYLTDAYTQLEIKELGAYIKPERDYLFNYEGVKLLSDRYLVKGL 175

Query: 310 NGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
                E+PQ  FM +AM LA+ E +  + + A +FY+LLSS     +TPTL N+GT   Q
Sbjct: 176 KKEVFELPQERFMVIAMHLAIPEEKAKRMEYAKKFYDLLSSLQMTVATPTLANAGTPFYQ 235

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF++ V D+L+ I+   Q+ + ++K+ G LG     +R L + I G    S GVIP+
Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFSSVSKHGGALGIYVGKIRALNSEIRGNKNASGGVIPW 295

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ NDTA+AV+Q G+RKG     L+ WH D+ +FLDL+ N GDDRR+ HD+ TA  +P+
Sbjct: 296 VRLYNDTAIAVDQLGRRKGGATITLDIWHADLYDFLDLKTNNGDDRRKAHDIFTALSVPN 355

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLH---------DLYGKEFEIAYENYERQADRGEIKVFR 538
           LFM+R+ +   W+LF P  V+ +          ++   EF   Y   E   +   I    
Sbjct: 356 LFMERLERREEWSLFDPYLVNKVMGFSLEDSYDEVAENEFTKRYLACEECKELPRI---- 411

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-- 596
            + A+ + ++++    ETG P+I F+D  N  +P +H G+++SSNLC EIT N S  E  
Sbjct: 412 TVPALEVMKRIMKSAVETGAPFIFFRDTVNQANPNKHAGMIYSSNLCQEITQNMSESELR 471

Query: 597 ---------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
                                   CNL SI+L             LA  I   +R+LDNV
Sbjct: 472 EELIQDESGAKVIITKIKPGDMVTCNLNSISLGRIEK------KDLAVNIPLQIRMLDNV 525

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           I +N   + +A+ ++  +RAIGLG  G+   L    I + + + +E AD+  E I++ AI
Sbjct: 526 ITLNQTPVAEARITSDKYRAIGLGTSGYHHYLVNHGIGWETQKHLEEADDLFEEIAYQAI 585

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS+ELA+E+G Y +F GS W+ G              +       +   W  L K V  
Sbjct: 586 KASMELAKEKGKYEAFHGSEWETG--------------EYFKRRDYTSDRWLALSKEVAE 631

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            GMRN    A+APT + +NI   S  IDP ++  +++    G F         +L   + 
Sbjct: 632 HGMRNGYITAVAPTGSTSNIANTSAGIDPIFKRYFIEE-KKGSFI---PKTAPDLNTSNF 687

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           W                           ++  A  ID  + I +   RQ+ IDQ+QS NL
Sbjct: 688 W---------------------------LYKEAHTIDQQFSIRACGIRQRHIDQSQSFNL 720

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           Y+  E     +  +Y +AW  GLKT YY+R++S    E
Sbjct: 721 YITPEYKAIDILNLYMEAWRKGLKTIYYVRNQSLEMDE 758


>gi|56419446|ref|YP_146764.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           kaustophilus HTA426]
 gi|56379288|dbj|BAD75196.1| ribonucleoside-diphosphate reductase alpha subunit [Geobacillus
           kaustophilus HTA426]
          Length = 785

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 262/805 (32%), Positives = 392/805 (48%), Gaps = 92/805 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++ +   + ++   L   
Sbjct: 31  KMIIIDDQGKPVSFSREEFASLIGQAVAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L++L RE         +     E    +        
Sbjct: 91  AILEGLSYIDEDEPDWTFVCARLYLQQLYREAARQRGYDAR-----ERYGDFYSLIVSLT 145

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           E+GV + LL E     ++    + L   +D  F Y+GL+ L DRY          E+PQ 
Sbjct: 146 EQGVYSPLLLERYTKEEIETAGSFLDPGKDLLFTYIGLRTLADRYLARDYERRLYELPQE 205

Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L + E    + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 206 RFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 265

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 266 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 325

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q  
Sbjct: 326 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 385

Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547
            W LF P EV  +     ++          F   Y     +    + K    + A+ + +
Sbjct: 386 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSKEK----VPAIEVMK 441

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501

Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +         E R   +      L WD LK+ V   GMRN   MAIAP
Sbjct: 617 PAFPGSDWQTGAYF--------ERRGYQSHGE---LDWDRLKQDVARYGMRNGYIMAIAP 665

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +        V       +L ++  W            
Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 709

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  AW  GLKTTYY+RS S T  E
Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGTIDE 779


>gi|261419129|ref|YP_003252811.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp.
           Y412MC61]
 gi|261375586|gb|ACX78329.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y412MC61]
          Length = 760

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 263/805 (32%), Positives = 393/805 (48%), Gaps = 92/805 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201
           K+ I+ D G  +SF+ +    ++ +A +G   +S    +   ++ +   + ++   L   
Sbjct: 6   KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 65

Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            I    + I E EP++  V AR  L +L RE         +     E    +        
Sbjct: 66  AILEGLSYIDEDEPDWTFVCARLYLRQLYREAARQRGYDER-----ERYGDFYSLLVALT 120

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           E+GV + LL E     ++  +   L  E+D  F Y+GL+ L DRY          E+PQ 
Sbjct: 121 EQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYELPQE 180

Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            F+ +AM L + E    + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV 
Sbjct: 181 RFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 240

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+
Sbjct: 241 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 300

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q  
Sbjct: 301 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 360

Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547
            W LF P EV  +     ++          F   Y     ++   + K    + A+ + +
Sbjct: 361 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSKEK----VPAIEVMK 416

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
            ++    E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S              
Sbjct: 417 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 476

Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       LA  I   +R+LDNVID+N   + +A  
Sbjct: 477 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 531

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RA+GLG  G+   L L  I + S EAV  ADE  E I++ AI AS+ELA+E+G+Y
Sbjct: 532 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 591

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F GS W  G +         E R   +      L WD LK+ V   GMRN   MAIAP
Sbjct: 592 PAFPGSDWQTGAYF--------ERRGYESHGE---LDWDRLKQDVARYGMRNGYIMAIAP 640

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            A+ + I G + SIDP +  +Y +        V       +L ++  W            
Sbjct: 641 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 684

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887
                           + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  
Sbjct: 685 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 729

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++  AW  GLKTTYY+RS S T  E
Sbjct: 730 LHLTAWKSGLKTTYYVRSTSGTIDE 754


>gi|292490775|ref|YP_003526214.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
 gi|291579370|gb|ADE13827.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
          Length = 1695

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/433 (54%), Positives = 304/433 (70%), Gaps = 3/433 (0%)

Query: 8   NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67
           +   E   P++    P +    +VI+RNG VT FDPSKI+ A+ KAF+AVEG  A+ S R
Sbjct: 8   SPDSESLDPTVRATAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLAVEGGSAATSKR 64

Query: 68  VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
           +   ++ LT Q V    +  ++   VHIEDIQDQVE +LM+ G+HKI R YVLYREER+ 
Sbjct: 65  IHQTVEALTAQVVEACTRRLETGGTVHIEDIQDQVELALMRGGYHKIARAYVLYREERTR 124

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187
            RA  +         P L++ + DG ++  +  RL  I+EEAC  L +   + +L+ET +
Sbjct: 125 ERAQAAAKTKKKAAEPPLQMTLADGRVVPLDKARLTRIIEEACQALPETQPQTILNETLR 184

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           N++DG++E D+E ALI S+RT IEKEP+Y+ V AR LL+ LRRE L+ ++     AT  E
Sbjct: 185 NLFDGVAEQDVERALIMSARTFIEKEPHYSYVAARLLLDSLRREALSFIHGAETHATQGE 244

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M   YPEYF  YI++G   +L+   +  +DL  L   L+ ERDF F YLGLQ LYDRYF+
Sbjct: 245 MAERYPEYFAAYIKQGADLQLIDPRLTQYDLTRLGQALRPERDFEFTYLGLQTLYDRYFI 304

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           H  G R E+PQAFFMRVAMGLA+ E E+E+R +EFY LLSSF FM STPTLFNSG+  PQ
Sbjct: 305 HSGGIRFELPQAFFMRVAMGLAINEVEREERTIEFYELLSSFDFMSSTPTLFNSGSLRPQ 364

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSC+LTTV DDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PF
Sbjct: 365 LSSCYLTTVADDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPF 424

Query: 428 LKVANDTAVAVNQ 440
           LKVANDTAVAVNQ
Sbjct: 425 LKVANDTAVAVNQ 437



 Score =  403 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 225/371 (60%), Positives = 277/371 (74%), Gaps = 1/371 (0%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
             TEITLN+S +E AVCNLGSINL  H   N  +  KL  TI TA+R+LDNVID N +++ 
Sbjct: 1325 NTEITLNTSDDEIAVCNLGSINLPQHLDENGLNLPKLEKTITTAMRMLDNVIDYNYYSVP 1384

Query: 645  KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             A++SN  HR +GLGLMGFQ AL+ L +PYAS  AVE AD SME IS++AI AS  LA E
Sbjct: 1385 TARRSNLRHRPVGLGLMGFQDALYKLRLPYASEAAVEFADRSMEAISYYAIKASSNLAGE 1444

Query: 705  RGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            RG Y +F+GSLW +G+ PIDSIGLL + R   L  +RT  L WD L+++VKT+GMRNSNC
Sbjct: 1445 RGKYCTFEGSLWSKGILPIDSIGLLEQGRGGYLQQDRTQTLDWDGLREQVKTVGMRNSNC 1504

Query: 764  MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            MAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK RDLWDE M++D
Sbjct: 1505 MAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKARDLWDEVMVND 1564

Query: 824  LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
            LKY DGS+  I+RIP+DLK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGK
Sbjct: 1565 LKYFDGSVQPIDRIPEDLKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPSGK 1624

Query: 884  KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            KLD +Y+ AW+ GLKTTYYLRS  AT VEKST+            +       S    + 
Sbjct: 1625 KLDNLYKLAWVRGLKTTYYLRSLGATHVEKSTMTSDQVNTLNAVQSGSPQEPESEAPQAC 1684

Query: 944  CTSDTECEVCQ 954
               D +CE CQ
Sbjct: 1685 SILDPDCEACQ 1695



 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 120/154 (77%), Positives = 131/154 (85%)

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            TA  V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR
Sbjct: 808 TTAALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 867

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  WTLFSPDE  DLHDL G+ FE AY  YE +A  GEIK F+K  AV LWRKML+M
Sbjct: 868 VAEDGEWTLFSPDETPDLHDLVGQAFEEAYLRYEEKAACGEIKNFKKQRAVDLWRKMLSM 927

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           LFETGHPWITFKDPCN+RSPQQH GVVHSSNLC 
Sbjct: 928 LFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCC 961


>gi|159041217|ref|YP_001540469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caldivirga maquilingensis IC-167]
 gi|157920052|gb|ABW01479.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caldivirga maquilingensis IC-167]
          Length = 877

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 221/877 (25%), Positives = 371/877 (42%), Gaps = 86/877 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD--GLSESDLETA 201
            + ++  +G    FN  +L   ++ A +     + + +L E    +     ++ S++  +
Sbjct: 11  MITVIKRNGLREEFNPVKLLNSLKLAGA----PNPERILEEVTSQIKGKGEVTSSEISDS 66

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +      LI ++  +      +LL  + ++       K   +    +   Y      +  
Sbjct: 67  VQLMMLNLISEDFKWHDAARNYLLFSIYKQAWGKEVVKSINSGSLTLSEAYRRGLRDWFN 126

Query: 262 EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP 317
           +G+   L       F    L  L N L   RD    Y G++ L  RY +   +GS  E P
Sbjct: 127 QGLNQGLWSLDAAKFYEKHLDELMNKLDPSRDLLLTYNGVRTLMSRYLMKRLDGSFFETP 186

Query: 318 QAFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           Q  +MR+AMG+A  E     +  K   +FY+L+S   F+ ++PT+FN+ T+  +LS+CF+
Sbjct: 187 QYMWMRIAMGVAYSEVKYGNDPIKWVEKFYDLVSQLKFLPNSPTMFNALTKLGELSACFV 246

Query: 374 TTVPDD------------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
             V D              +GI  A +  A+L +   G+G  +  +R  G  +  T+G +
Sbjct: 247 IPVDDCLSKDSNRDNPNCFFGIMDAAKLAALLFQAGAGVGYQFGELRPEGDVVKSTSGVA 306

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F+++ +     + QGGKR+GA    L  WH D+E+F+  +     D  +  + N 
Sbjct: 307 SGPLSFMRLFDTLVDVIKQGGKRRGAQMGMLFWWHPDIEKFITSKTGRLKDV-QLQNFNI 365

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  I D FM +  +     L +P E + L+  +G+EF   YE    +   G +KV+R+++
Sbjct: 366 SVTIDDYFMTKALRGEDVYLLNPRECTCLYQTWGQEFIKCYEECVSKVKAGLVKVWRRVN 425

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV------GVVHSSNLCTEITLNSSSE 595
           A  LW K++   +++G P +  +D  N++    +        V++ +N C E+ L     
Sbjct: 426 AGELWSKIVESAWDSGDPGLWNRDVANMKIEYVNDVVSEKYRVINGTNPCGEVALYPF-- 483

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNLGSINL  +   N  D+  LA+ I  AVR LD+VID N H  E   ++N   R 
Sbjct: 484 --ESCNLGSINLTKYINGNSIDWVSLANDIMLAVRFLDDVIDSNQHPHEYLDRANKASRR 541

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+ G+   L  L IPY SP+A+ +AD  M F++  A+ ASVELA+E+G +  +  S 
Sbjct: 542 IGLGINGWADVLVSLDIPYDSPKAIALADVVMGFVARVAVRASVELAKEKGPFPLWPSSK 601

Query: 716 WDQGVFPIDSIG-----LLAEVRDELAMNRT------------------------SRLPW 746
           W  G  P          +L        +                            R   
Sbjct: 602 WRSGFLPWRVHDERVSKMLEVKGVSSDVEEYLEILKLGYGELGGLPNKAEEYLAKLRATD 661

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           DEL K   T+G+RN   ++IAP  + + I GV+ SI+P +   YV++   G     N   
Sbjct: 662 DELIKDASTVGVRNGALISIAPEGSRSLIAGVNSSIEPIFAIAYVRNLSIGKLIEYNYTA 721

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL--KKIHATAFEIDPMWLIESASRRQ 864
           + +LK  +  D    S +            +P +     +  TA EI   W +       
Sbjct: 722 LRKLKDSNALDNETTSKVLESG-------MLPSNHVMHPVLKTANEIHWRWHVFMQVTFA 774

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           KW D   S  + +    + + ++  YR AW +G       R +S       T     GK 
Sbjct: 775 KWSDSGVSKTINMPSNATKEDVNGAYRLAWALGAFGITVYRDKSKAVQVIYTGVEGKGKA 834

Query: 924 NAVPVTD----------PNSSTHSLGIPSSCTSDTEC 950
            +                     +       T D  C
Sbjct: 835 QSTESKAIKVTVKAINLNRDIEENKLAEIGETDDPAC 871



 Score = 41.0 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 23/96 (23%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    F+P K+  ++  A       GA    R+   ++ +T Q         K  
Sbjct: 14  VIKRNGLREEFNPVKLLNSLKLA-------GAPNPERI---LEEVTSQI--------KGK 55

Query: 91  LIVHIEDIQDQVECS---LMQSGH--HKITREYVLY 121
             V   +I D V+     L+      H   R Y+L+
Sbjct: 56  GEVTSSEISDSVQLMMLNLISEDFKWHDAARNYLLF 91


>gi|239826136|ref|YP_002948760.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp.
           WCH70]
 gi|239806429|gb|ACS23494.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. WCH70]
          Length = 761

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 259/810 (31%), Positives = 387/810 (47%), Gaps = 92/810 (11%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSES 196
              A  + I  ++G    F+ +RL   +         + +   +    + +   D LS  
Sbjct: 2   ELQANTIIITSENGQTKPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSAE 61

Query: 197 DLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +   LI    + I + EP +  V A   L+KL +E         ++           E 
Sbjct: 62  QITNYLILEGLSYISEAEPEWTFVCAHIYLQKLYKEAAKQRGYDAKQ-----RYGSLYEL 116

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
               + +GV  R L ++    ++  L   +  ++D  F Y+GL+ L DRY     + +  
Sbjct: 117 ITTLVSKGVYDRSLLDNYSKEEINELGKLIDPDKDKLFTYIGLRTLADRYLARDYDRNLY 176

Query: 315 EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E+PQ  F+ +AM L  KE    +     E Y  LS+ +   +TPTL N+G  + QLSSCF
Sbjct: 177 ELPQERFLIIAMTLMAKEPKHRRFTFIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCF 236

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + TV D L GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N
Sbjct: 237 IDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLN 296

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           +TAV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM++
Sbjct: 297 NTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQ 356

Query: 493 VTQNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           V +   W LF P EV              +     F   Y    ++    + K    + A
Sbjct: 357 VEKRGDWYLFDPHEVRKVMGFSLEDFYDEEKGSGSFREKYWQCVQEERLSKEK----VPA 412

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595
           + + + ++    E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N S         
Sbjct: 413 IEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTVVEKQYT 472

Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SINL     +     D L   I   +R+LDNVID+N   +
Sbjct: 473 KDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNNIPV 527

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +AK +N  +RA+GLG  G+   L L  I + S EAVE AD+  E I++ AI AS+ELA+
Sbjct: 528 LQAKFTNQKYRAVGLGTFGWHHLLALKGIRWESDEAVEYADKLYEKIAYLAIKASMELAK 587

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G+Y +F GS W  G +         + R      RT    WD LK++V   GMRN   
Sbjct: 588 EKGSYPAFPGSDWQTGAYF--------DKRGYH---RTEEFDWDALKEQVAKHGMRNGYV 636

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           MAIAP A+ + I G + SIDP +  +Y +        V       +L     W       
Sbjct: 637 MAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNAETTW------- 685

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882
                                + +A+ ID  W I+  + RQ+ IDQA S N Y L+    
Sbjct: 686 --------------------YYKSAYHIDQHWSIKQNAARQRHIDQAISFNFYVLNTIKA 725

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           K+L  ++  AW  GLKTTYY+RS S+T  E
Sbjct: 726 KELLDLHLTAWKSGLKTTYYVRSTSSTIDE 755


>gi|328722126|ref|XP_003247490.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 767

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/781 (25%), Positives = 338/781 (43%), Gaps = 51/781 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESD 197
           A +   L +   DGT+   +   +   +++ C GL+ +          K  +Y G++ S 
Sbjct: 2   AELKKHLHVQKRDGTIEKVHYDAITARIKQLCYGLEKIDPAATAIHVIKKFLYAGITTSQ 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A   ++ T+    P+Y K+ AR  +  L ++                          
Sbjct: 62  LDDAAAETAITMATIHPDYEKLAARIAISNLHKQTKEKFSDVIDDI------------HK 109

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
            Y    +        ++      L   + YE D+  +Y G + L   + +      IE P
Sbjct: 110 NYNYWNIGLSDDIYEIIMKHKDRLNEAINYENDYILDYFGFKYLIQHFLVKSENQTIERP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN----SGTRHPQLSSCFL 373
           Q  FM+VA+G+   +      A+E Y +LS       +P +      +   +  + S + 
Sbjct: 170 QHLFMKVAVGIHGDD---IDSAIETYKMLSQK-LCMFSPVVMQLQPAARKLNVSVISHYS 225

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+      +        +      +R  G +I G+ G+S G+   LK  +
Sbjct: 226 VAMIADSIDGIYDTSIRLSSFILPYSSVALHVHKIRAAGTYIQGSYGESSGLPLMLKQYD 285

Query: 433 DTAVAVNQGGKRK--GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                     + K    V  Y E WH D+ + +D  + T     +  +   A WIPD FM
Sbjct: 286 SIVRNSETLERPKSIKGVTIYCELWHADIMKVIDQIRMTSIADIKLKNCQLALWIPDEFM 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +  W+  SPD    L D++GKEF+  Y+ YE    + +  V R+I A  LW +++
Sbjct: 346 RRVQNDQMWSFMSPDHCPGLIDVHGKEFDNLYKEYE---LKSKSFVMRQIEAKKLWSQII 402

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P + FKD CN +S + H+G +  +    +    ++S+E A C   SI++   
Sbjct: 403 QSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMF 462

Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKSNHTHRAIGLGLMGF 663
             + N FD+ KL  T +     L+ +ID N         +E   K N    AIG+G+ G 
Sbjct: 463 LTSENIFDFSKLKETAKKLTYDLNKIIDNNNVILNKEKQLELGLKQNQW--AIGIGVQGL 520

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
                 +  P+ + EA  +  +  E I + A+ AS ELA   G Y +F  S   +G+   
Sbjct: 521 ADLFIKMKYPFDNKEARVLNTQIHESIYYGALEASCELATTNGPYKTFPNSPTSKGLLQF 580

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D             +  ++   W+ LK ++   G+RNS     + T   + ICG   SI+
Sbjct: 581 DLWN----------VKPSNLWDWNNLKTKITQHGLRNSLVTVTSNTEVESTICGKVNSIE 630

Query: 784 PSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           P   N+  +    G+       VVN  L+ +L  R LWD+ +   L  + GS+  I+ +P
Sbjct: 631 PLDTNVKRRYISLGESKPKEIQVVNPHLLKDLHDRKLWDDNLKYQLMNNMGSVQEIKGLP 690

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           +DLK+++ T +EID   LI  A+ R  +IDQ+Q+ +L + +     +  +    W MGLK
Sbjct: 691 EDLKQLYKTKWEIDQKDLIIMAADRAPFIDQSQAFSLNMVKADEDIISEMLISTWKMGLK 750

Query: 899 T 899
           T
Sbjct: 751 T 751


>gi|302386032|ref|YP_003821854.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           saccharolyticum WM1]
 gi|302196660|gb|ADL04231.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           saccharolyticum WM1]
          Length = 752

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 242/800 (30%), Positives = 378/800 (47%), Gaps = 100/800 (12%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L+   + G L       +      A   L+ +S K             ++  +   A
Sbjct: 8   QEILESFKELGELEEV-LDGIRQEWGSASYDLKHLSIKFTGF-----CKKNMNLEERLGA 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI ++  L  +E P++  + AR L+ +    +   + ++   +   ++  L         
Sbjct: 62  LIQAAVELTTQEAPDWEYIGARLLMVRFNIRLKEELGRRKIGSFFDKICFL--------T 113

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           EEG+    + E+    ++      +   R+  F Y GL++L +RY +     + +E PQ 
Sbjct: 114 EEGLYGDYILENYNKEEIQRFEGYMDQTRNHLFNYSGLELLLNRYVIRSHQNAPLETPQE 173

Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            F+ +AM LA+ ET ++E     FY++LS+     +TPTL N+   + QLSSCF+ TVPD
Sbjct: 174 MFLGIAMHLAMNETVDREAWVKRFYHMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GV+ ++K+ANDTAVAV
Sbjct: 234 SLDGIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVVRWIKLANDTAVAV 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496
           +Q G R+GAV  YL+ WH D+ EFL L+ N GDDR + HD+      P+LF K+  +N  
Sbjct: 294 DQLGMRQGAVAVYLDVWHKDLPEFLTLKTNNGDDRMKAHDVFPGVCYPNLFWKQAKENIE 353

Query: 497 AGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             W L  P E+  +      D YG ++E  Y +    +   +    R I    + R +L 
Sbjct: 354 GDWYLMCPHEILTVKGWALEDFYGIQWEERYLDCVSDSRIHK----RIIPIKDIIRLVLK 409

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------- 596
              ETG P+   +D  N  +P  H G+++ SNLCTEI  N S+ E               
Sbjct: 410 SAVETGTPFTFNRDIVNEANPNSHCGMIYCSNLCTEIAQNMSTVEQLEQQIRWVDGETVV 469

Query: 597 --------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                     VCNL S++L      +  D  +LA   R+AVR LDNVID+N   I  AK 
Sbjct: 470 VTVTKPGDFVVCNLASLSLGKI---DLTDTQELAELTRSAVRALDNVIDLNFFPIPYAKV 526

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +R +GLG+ G+   L    I + S E +E +D   E I++ AI AS + A+E+G Y
Sbjct: 527 TNLRYRPVGLGVSGYHHMLAKNGISWESQEHLEFSDRVFEAINYAAIQASCDFAREKGRY 586

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+GS W  G                          W  L+++V   GMRN   +AIAP
Sbjct: 587 DLFEGSQWQTG--------------AYFDKRGYCSEKWKSLREKVAAYGMRNGWLLAIAP 632

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T++ + I G +  +DP     Y++   SG    V      +L     W            
Sbjct: 633 TSSTSMIAGTTAGLDPVLNRYYLEEKKSGLVPRVAP----DLSPETFW------------ 676

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                           +  A  ID  W + +A  RQ+ +DQAQS+NLY+ ++ + +++  
Sbjct: 677 ---------------KYKNAHYIDQKWSVRAAGVRQRHVDQAQSMNLYITNDYTLRQVLG 721

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           +Y  AW  G+KT YY+RSRS
Sbjct: 722 LYILAWECGVKTIYYIRSRS 741


>gi|312112172|ref|YP_003990488.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus
           sp. Y4.1MC1]
 gi|311217273|gb|ADP75877.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. Y4.1MC1]
          Length = 761

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 256/797 (32%), Positives = 383/797 (48%), Gaps = 92/797 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204
           I +++G    F+ +RL   +         + +   +    + +   D LS   +   LI 
Sbjct: 10  ITLENGQTEPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSTEQITNYLIL 69

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              + I E EP +  V AR  L+KL +E       + ++        LY       + +G
Sbjct: 70  EGLSYISETEPEWTFVCARIYLQKLYKEAAKQRGYEAKQRY----GSLYA-LITALVSKG 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           V +  L       ++  L   +  ++D  F Y+GL+ L DRY     + +  E+PQ  F+
Sbjct: 125 VYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYLARDYHRNLYELPQERFL 184

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +AM L  KE    +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L
Sbjct: 185 IIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVDDSL 244

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+V+Q
Sbjct: 245 QGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVSVDQ 304

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM++V +   W 
Sbjct: 305 LGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQVEKRGDWY 364

Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           LF P EV              +     F   Y    ++    + K    + A+ + + ++
Sbjct: 365 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVQEERLSKEK----VPAIEIMKSIM 420

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595
               E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N S                 
Sbjct: 421 RSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTIVEKQYTKDGKIIIE 480

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +     D L   I   +R+LDNVID+N   + +A+ +N 
Sbjct: 481 KIPGDFVVCNLSSINLARAVTD-----DVLERLISIQMRMLDNVIDLNHIPVLQAQLTNQ 535

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAVE AD+  E I++ AI +S+ELA+E+G+Y +F
Sbjct: 536 KYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAYLAIRSSMELAKEKGSYPAF 595

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +         E R      R     WD LKK+V   GMRN   MAIAP A+
Sbjct: 596 PGSDWQTGAYF--------EKRGY---RRNDNADWDTLKKQVAKYGMRNGYLMAIAPNAS 644

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP +  +Y +        V       +L     W               
Sbjct: 645 TSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNAETTW--------------- 685

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  ++ 
Sbjct: 686 ------------YYKSAYHIDQHWSIKQNAVRQRHIDQAISFNFYVMNTIKAKELLDLHL 733

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  GLKTTYY+RS S
Sbjct: 734 TAWKAGLKTTYYVRSTS 750


>gi|295401052|ref|ZP_06811026.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976845|gb|EFG52449.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 761

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 256/797 (32%), Positives = 383/797 (48%), Gaps = 92/797 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204
           I +++G    F+ +RL   +         + +   +    + +   D LS   +   LI 
Sbjct: 10  ITLENGQTEPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSTEQITNYLIL 69

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              + I E EP +  V AR  L+KL +E       + ++        LY       + +G
Sbjct: 70  EGLSYISETEPEWTFVCARIYLQKLYKEAAKQRGYEAKQRY----GSLYA-LITALVSKG 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           V +  L       ++  L   +  ++D  F Y+GL+ L DRY     + +  E+PQ  F+
Sbjct: 125 VYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYLARDYHRNLYELPQERFL 184

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +AM L  KE    +     E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L
Sbjct: 185 IIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVDDSL 244

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+V+Q
Sbjct: 245 QGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVSVDQ 304

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM++V +   W 
Sbjct: 305 LGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQVEKRGDWY 364

Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           LF P EV              +     F   Y    ++    + K    + A+ + + ++
Sbjct: 365 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVQEERLSKEK----VPAIEIMKSIM 420

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595
               E+G P++ ++D  N ++P  H+G+++ SNLCTEI  N S                 
Sbjct: 421 RSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTIVEKQYTKDGKIIIE 480

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +     D L   I   +R+LDNVID+N   + +A+ +N 
Sbjct: 481 KIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNHIPVLQAQLTNQ 535

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAVE AD+  E I++ AI +S+ELA+E+G+Y +F
Sbjct: 536 KYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAYLAIRSSMELAKEKGSYPAF 595

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +         E R      R     WD LKK+V   GMRN   MAIAP A+
Sbjct: 596 PGSDWQTGAYF--------EKRGY---RRNDNADWDTLKKQVAKYGMRNGYLMAIAPNAS 644

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP +  +Y +        V       +L     W               
Sbjct: 645 TSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNAETTW--------------- 685

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I+  + RQ+ IDQA S N Y ++    K+L  ++ 
Sbjct: 686 ------------YYKSAYHIDQHWSIKQNAVRQRHIDQAISFNFYVVNTIKAKELLDLHL 733

Query: 891 QAWLMGLKTTYYLRSRS 907
            AW  GLKTTYY+RS S
Sbjct: 734 TAWKAGLKTTYYVRSTS 750


>gi|329928245|ref|ZP_08282156.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. HGF5]
 gi|328937963|gb|EGG34364.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. HGF5]
          Length = 792

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 242/807 (29%), Positives = 384/807 (47%), Gaps = 87/807 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205
           ++  +   ++F+  RL +  +    GL  +  + +L      +  + ++  ++ +A   S
Sbjct: 20  VVKPNNRQLAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 79

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE PN+    AR  L  L ++  T    +  KA   E    +       +++G+
Sbjct: 80  ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 136

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               L  S     +  L   +   RD  F+Y+GL  L +RY  +  +G  +E+PQ  +M 
Sbjct: 137 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMV 196

Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
           +AM L   E   ++     E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 197 IAMFLMHNEPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 256

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 257 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 316

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+
Sbjct: 317 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWS 376

Query: 501 LFSPDEVSDLHDL-----YGKEFEIAYEN---------YERQADRGEIKVFRKISAVALW 546
           LF P EV  +             E  Y++            +A    +     + A+ + 
Sbjct: 377 LFCPHEVKKIMGWKDENGRPLGLEDFYDHTQGEGEFRQKYAEAVANPLLPRITVQAIDIM 436

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595
           ++++    ETG P++ ++D  N  +P    G+++SSNLCTEI  N S             
Sbjct: 437 KRIMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 496

Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L             L   +   VR+LDNVIDIN   +
Sbjct: 497 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 551

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+
Sbjct: 552 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 611

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y  FKGS W+ G +         E   +      +   W EL++ V+  G+RN+  
Sbjct: 612 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 667

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +      + V N     +L ++ +W       
Sbjct: 668 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKVANP--APDLSEKTIW------- 716

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                + TAF ID  W I+ A+ RQ+ +DQAQS NLY+  +   
Sbjct: 717 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 756

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +   ++  AW  G+K+TYY+RSR+ T
Sbjct: 757 SEFLELHLHAWKAGIKSTYYVRSRALT 783


>gi|12002837|gb|AAG43397.1|AF168794_1 ribonucleotide reductase subunit M1 [Xenopus laevis]
          Length = 520

 Score =  472 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/535 (40%), Positives = 324/535 (60%), Gaps = 18/535 (3%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400
            YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + GI+  L++ A+++K +GG+
Sbjct: 1   TYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGI 60

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDV 459
           G   + +R  G++I GTNG S G++P L+V N+TA  V+QG  KR GA   YLE WH DV
Sbjct: 61  GVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDV 120

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +FLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P E   L +++G +FE
Sbjct: 121 FDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFE 180

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             YE YER     E +  + + A  +W  ++    ETG P++ +KD CN +S QQ++G +
Sbjct: 181 ELYEKYER-----EGRARKVVKAQQVWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTI 235

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDI 638
             SNLCTEI   +S +E AVCNL S+ L  +  +   FD+ KLA   +  V+ L+ +I+I
Sbjct: 236 KCSNLCTEIVEYTSEKEVAVCNLASLALNMYVTSERSFDFKKLADVTKVIVKNLNKIIEI 295

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +A+ SN  HR IG+G+ G   A  L+  P+ S +A  +  +  E I + A+ +S
Sbjct: 296 NFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFQSEKAQMLNKQIFETIYYAALESS 355

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA+E G Y +++G    +G+   D   +            T    W  LK+++   G+
Sbjct: 356 CELAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGI 405

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L ++ LW+E
Sbjct: 406 RNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNE 465

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            M + +  ++GSI N+  IP +LK+++ T +EI    +I  A+ R  +IDQ+QSL
Sbjct: 466 EMKNQIIANNGSIQNVPDIPAELKELYKTVWEISQKTVITMAADRGAFIDQSQSL 520


>gi|261404532|ref|YP_003240773.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           sp. Y412MC10]
 gi|261280995|gb|ACX62966.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. Y412MC10]
          Length = 777

 Score =  472 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 242/807 (29%), Positives = 384/807 (47%), Gaps = 87/807 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205
           ++  +   ++F+  RL +  +    GL  +  + +L      +  + ++  ++ +A   S
Sbjct: 5   VVKPNNRQLAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 64

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE PN+    AR  L  L ++  T    +  KA   E    +       +++G+
Sbjct: 65  ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
               L  S     +  L   +   RD  F+Y+GL  L +RY  +  +G  +E+PQ  +M 
Sbjct: 122 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMV 181

Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
           +AM L   E   ++     E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMFLMHNEPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+
Sbjct: 302 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWS 361

Query: 501 LFSPDEVSDLHDL-----YGKEFEIAYEN---------YERQADRGEIKVFRKISAVALW 546
           LF P EV  +             E  Y++            +A    +     + A+ + 
Sbjct: 362 LFCPHEVKKIMGWKDENGRPLGLEDFYDHTQGEGEFRQKYAEAVANPLLPRITVQAIDIM 421

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595
           ++++    ETG P++ ++D  N  +P    G+++SSNLCTEI  N S             
Sbjct: 422 KRIMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 481

Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L             L   +   VR+LDNVIDIN   +
Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 536

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+
Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 596

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y  FKGS W+ G +         E   +      +   W EL++ V+  G+RN+  
Sbjct: 597 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 652

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +      + V N     +L ++ +W       
Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKVANP--APDLSEKTIW------- 701

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                + TAF ID  W I+ A+ RQ+ +DQAQS NLY+  +   
Sbjct: 702 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 741

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +   ++  AW  G+K+TYY+RSR+ T
Sbjct: 742 SEFLELHLHAWKAGIKSTYYVRSRALT 768


>gi|328719872|ref|XP_003246886.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 766

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/779 (25%), Positives = 348/779 (44%), Gaps = 48/779 (6%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESD 197
           A +   L +   DGT+   +   +   +++ C GL+ +          K  ++ G++ S 
Sbjct: 2   AELKKHLYVQKRDGTIEKVHYDEIIARIKQLCYGLEKIDPAATAIHVIKKCLFAGITTSQ 61

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+ A    + T+    P+Y K+ AR  +  L ++              ++      +Y+ 
Sbjct: 62  LDDAAAEMAITMATIHPDYEKLAARIAISNLHKQTKEKFSDVIDDIHKND------DYWN 115

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             + + +   ++       +   L   + YE D+  +Y G + L   + +      IE P
Sbjct: 116 TGLSDDIYEIIM------KNKDRLNEAINYENDYILDYFGFKYLTQNFLVKSENQTIERP 169

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN----SGTRHPQLSSCFL 373
           Q  FM+VA+ +   +      A+E Y +LS       +P +      +   +  + S + 
Sbjct: 170 QHLFMKVAVSIHGDD---IDSAIETYKMLSQK-LCMFSPVVMQLQPAARKLNVSVISHYS 225

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
             +  D + GI+  L   +        +      +R  G +I G+NGKS G+   LK  +
Sbjct: 226 VAMIADSIDGIYDTLNRLSTFILPYSSVAVHVHKIRAAGTYIKGSNGKSSGLPLMLKQYD 285

Query: 433 DTAVAVNQGGKRK--GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                     + K    V  Y E WH D+ + +D  + T     +  +   A WIPD FM
Sbjct: 286 SMVHCKETLERPKSIKGVAIYCELWHADIMKIIDQIRKTTIADIKLKNSQLALWIPDEFM 345

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +RV  +  W+  SPD    L D++G+EF+  Y+ YE    + +  V R+I A  LW +++
Sbjct: 346 RRVENDQMWSFMSPDHCPGLIDVHGEEFDNLYKEYE---LKSKSFVMRQIEAKKLWSQII 402

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ETG P + FKD CN +S + H+G +  +    +    ++S+E A C   SI++   
Sbjct: 403 QSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMF 462

Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN----HTHRAIGLGLMGFQS 665
             + N FD+ KL  T +     L+ +I+ N   + K  +          AIG+G+ G   
Sbjct: 463 LTSENIFDFSKLKETAKKITYDLNKIIENNNVILNKEDQLKLGLKQNQLAIGIGIQGLAD 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
               +  P+ + EA  +  +  E I + A+ AS ELA + G Y ++  S   +G+   D 
Sbjct: 523 LFIKMRYPFDNKEARYLNIQIHETIYYGALEASCELASKNGPYKTYPNSPTSKGLLQFDL 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                       +  ++   W+ LK ++   G+RNS     + T   + I G   SI+P 
Sbjct: 583 WN----------VKPSNLWDWNSLKTKIAQHGLRNSLVTVTSNTEVESTIFGNVNSIEPL 632

Query: 786 YQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
             N+  +    G+       VVN +L+ +L  R LWDE +I +L  + GSI  I  +PDD
Sbjct: 633 DTNVKRRYISLGESKPKEIQVVNPYLLKDLHDRKLWDEKLIPELVNNMGSIQEI-NLPDD 691

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899
           LK+++ T +EID   L+  A+ R  +IDQ+Q+ +L + + +   +  ++   W MGLKT
Sbjct: 692 LKQLYRTKWEIDQKVLVTMAADRAPFIDQSQAFSLNMVKANEDIISEMHISTWKMGLKT 750


>gi|207091868|ref|ZP_03239655.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 733

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 297/782 (37%), Positives = 414/782 (52%), Gaps = 107/782 (13%)

Query: 199 ETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  LI ++   I+ + PN++ V +R  L  L  +V                      +  
Sbjct: 1   QQTLIKTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLK 45

Query: 258 RYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
            Y E   +   + +   + FDL +L   +K ERDF F YLG++ LYDRY L   N + IE
Sbjct: 46  EYFENAEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIE 105

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +PQ  FM +AM LA  E E  K A+EFY +LS F  MC+TPTL N+ T   QLSSC++ +
Sbjct: 106 LPQHMFMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGS 165

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
            PD++ GIF + +E A+L+KY GG+G D++ VR +G++I G    S G IPFLK+AND A
Sbjct: 166 TPDNIEGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVA 225

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +AV+Q G RKGA+  YLE WHIDV EF+DLRKN+GD+RRR HD+  A W+ DLF+KRV +
Sbjct: 226 IAVDQLGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLE 285

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           +A WTLF P E  DL +LYG++FE  Y  YE+        +   I+A  LW+K+L   FE
Sbjct: 286 DAMWTLFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFE 341

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------- 605
            G P++ FKD  N  +P  H G++ SSNLCTEI  N+             GSI       
Sbjct: 342 AGLPFLAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGSIEFFEEKQ 401

Query: 606 -----------------------------------------NLLAHFANNQFDYDKLAST 624
                                                    NL +   +     + +   
Sbjct: 402 LVTTDSNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRV 461

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +   VR+LDNVID+N +   K K +N  +RAIGLG+MG    L    I + S E +E  D
Sbjct: 462 VPIMVRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKID 521

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
             ME IS+HAI  SV LA+E+G Y  F+ S W +G+FPID     A    E  +   +  
Sbjct: 522 ALMEQISYHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-C 580

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+SG   VV  
Sbjct: 581 DWQGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP 640

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            L          +    +                      + +A++ID   LI++A+ RQ
Sbjct: 641 NL----------NAETWN---------------------FYTSAYDIDAKDLIKAAAVRQ 669

Query: 865 KWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           KWIDQ QS+N++L  +  SGK L  IY  AW +GLK+TYYLRS S +  EKS L      
Sbjct: 670 KWIDQGQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVEC 729

Query: 923 LN 924
            N
Sbjct: 730 FN 731


>gi|319790521|ref|YP_004152154.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio
           ammonificans HB-1]
 gi|317115023|gb|ADU97513.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio
           ammonificans HB-1]
          Length = 764

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/794 (27%), Positives = 383/794 (48%), Gaps = 83/794 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++   G     + +++  ++  A  GL  V++  + ++   + +DG++   +  A+I
Sbjct: 3   RITVVKRKGDREPLSIEKIRKVINWAAQGLA-VNTLKLEAKLKLHFFDGITTRQIHEAVI 61

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++ +L   +EP++  +  R  +  L +EV  ++ +   K  +      Y +     +++
Sbjct: 62  NTALSLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYVGGGEEYLKVVKDLVDK 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+  + L E   + +LV   + +K   DF ++Y G  +L  RY      +  E+PQ  FM
Sbjct: 120 GLYTKELLEKYSEEELVEAGDYIKQSYDFLYDYAGANLLARRYLCIYEDTPFELPQEMFM 179

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A+ LA+ E   ++     +FY+L++      +TP L N    +  LSSCF+T + D+L
Sbjct: 180 TIALMLAINEPKEKRMAFVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDNL 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I     + A ++K +GG+G + + +R  G+ I    G S GV+P++K+ ND AVAVNQ
Sbjct: 240 DSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWVKILNDVAVAVNQ 299

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            GKR GAV   L+ WH+DV +FL+L+   GD RR+  D+     IPDLFM+RV  N  W 
Sbjct: 300 EGKRAGAVTVALDVWHLDVYDFLELKTENGDLRRKAFDIFPQLVIPDLFMERVKLNQEWL 359

Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P EV       L++L+G EFE AY + E +    ++++ +++ A  L++++L     
Sbjct: 360 LVDPYEVERKFGYRLYELWGDEFEKAYTHVEAE--SDKLRLKKRVKARELFKEILKTQVA 417

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596
           TG P+I FKD  N  +P +H G + + NLC E   N    +                   
Sbjct: 418 TGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKGFKTYTDGKRIINEVEECG 477

Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNL S+NL         + ++L   +R AVR+LDN I++    I +++  N  +R 
Sbjct: 478 LVHTCNLLSVNLANI-----ENDEELEEAVRAAVRILDNTIELTSSPIPESELHNRRYRT 532

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G +G    L    IPY   +++ + DE  E I+++ I  SV LA+ERGA+  F+GS 
Sbjct: 533 IGIGTLGLADYLAKREIPYGR-QSLAVIDELYEKIAYYGIDESVNLAKERGAFPLFEGSD 591

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+       ++ +    L    + +  W +L  ++KT G+RN    AIAP  +   +
Sbjct: 592 WSKGI-------IIGKDAGYLLEKTSLKEKWLKLLSKLKTYGIRNGQLFAIAPNTSSGLL 644

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  + P +   Y+  N      +   +L     +   W                   
Sbjct: 645 QGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KEKFW------------------- 680

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYRQ 891
                    +  +  +D   +I+  S  QKW+D   S+    NL L     + +   +  
Sbjct: 681 --------FYRESKTMDQKEVIDVISTIQKWVDSGISMELLFNLNL-GIRARDIYETFLY 731

Query: 892 AWLMGLKTTYYLRS 905
           AW  G+KT YY+R+
Sbjct: 732 AWEKGIKTVYYVRT 745


>gi|253574543|ref|ZP_04851884.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846248|gb|EES74255.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 777

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 248/811 (30%), Positives = 379/811 (46%), Gaps = 95/811 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205
           +   +   ++F+S RL +  +    GL +V  + +L      +  D ++  ++  A   S
Sbjct: 5   VTKPNNRQLAFDSARLGVYADRILQGLHNVDKERLLRGVNAKLRRDVVTGEEISNAFTMS 64

Query: 206 SRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ K EP++    AR LL  L ++       +  KA   E    +        + G+
Sbjct: 65  ALELVSKDEPDWKYAAARSLLTSLYKKAA---VNRRYKAYPEEPYGSFYHLITELCQLGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMR 323
               L E      +  L   +    D  F+Y+GL  L +RY     +G  +E+PQ  +M 
Sbjct: 122 YREELLECYTKEQIEELGRTIDPSCDLLFDYIGLLTLTERYLATDFDGRTMELPQERYMV 181

Query: 324 VAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
           +AM L     E ++ +   E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMYLMHKEPEEKRLELVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W 
Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEARGEWH 361

Query: 501 LFSPDEVSD------------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           LF P EV                      +L    F   Y           I     + A
Sbjct: 362 LFCPHEVKKTMGWKDENGRPLGLEDFYDEELGKGSFREKYAEAVAHPTLSRI----TMPA 417

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595
           + + ++++    ETG P++ ++D  N  +P +  G+++SSNLCTEI  N S         
Sbjct: 418 IDIMKRIMKSQLETGTPYMFYRDTVNRANPNRAHGMIYSSNLCTEIMQNQSPTVVEQEEL 477

Query: 596 ----------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                           +  VCNL SI+L             L   +    R+LDNVIDIN
Sbjct: 478 VTKDGQTRIVVSKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQTRMLDNVIDIN 532

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +A+ +N  +RAIGLG  G    L L  I + S EAVE  D   E I++  I +S+
Sbjct: 533 NIEVLQAQYTNSQYRAIGLGTFGLHHLLALEGIRWESQEAVEYNDALYEKINYLLIKSSM 592

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+G Y  F GS W+ G +  +S G +   R+   +   +   W EL+K V+  G+R
Sbjct: 593 ELAKEKGKYPKFAGSDWETGQY-FESRGYVDGTREGKYV---TTEQWRELQKEVRENGVR 648

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+   AIAP  + + I G + SIDP Y+ L  +      + + N     +L ++ +W   
Sbjct: 649 NAWMFAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKIANP--APDLSEKTIW--- 701

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                    + TAF ID  W IE A  RQ+ +DQ QS NLY+  
Sbjct: 702 ------------------------YYKTAFLIDQHWSIEMAGARQRHVDQGQSFNLYVRP 737

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +        ++  AW  GLK+TYY+RSR+ T
Sbjct: 738 DIRATDFLDLHLHAWKAGLKSTYYVRSRALT 768


>gi|323692022|ref|ZP_08106270.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
 gi|323503945|gb|EGB19759.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
          Length = 764

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 239/803 (29%), Positives = 376/803 (46%), Gaps = 104/803 (12%)

Query: 149 MDDGTLISF-NSKRLEMIVEEACSGLQDV---------SSKIVLSETYKNMYDGLSESDL 198
              G+ +S  + + L   + E    L+++         S +++  +    +   +   + 
Sbjct: 11  KTAGSQVSLQSLEHLTREIPELAPALEEIEARWPKEEYSPELLAHKFSAFVKKNMEPEEA 70

Query: 199 ETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
            + LI ++  L  KE P++  + A  LL + R  +     K    + +  ++ L      
Sbjct: 71  LSLLIQAAAELTRKEAPDWEYIAAYLLLVRFRINLREEDKKHGIGSFYDRIRYL------ 124

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM 316
               E +    + E     +L      +  +RD  F Y GL +L  RY +       +E 
Sbjct: 125 --TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLES 182

Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           PQ  F+ +++ LA+KE  ++ K    FY++LS+     +TPTL N+   + QLSSCF+ T
Sbjct: 183 PQEMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDT 242

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTA
Sbjct: 243 VPDSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTA 302

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +
Sbjct: 303 VAVDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADE 362

Query: 496 --NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             ++ W L  P E+       L D YG+E+E  Y +  +     E    R +    + R 
Sbjct: 363 AIDSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKD----ERIPKRVLPIKDIIRL 418

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +L    ETG P+   +D  N  +P +H G+++ SNLCTEI  N S  E            
Sbjct: 419 ILKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGE 478

Query: 597 -----------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                        VCNL S++L     +   D  +L   +R AVR LDNVID+N   +  
Sbjct: 479 TVVVTVTKPGDFVVCNLASLSLGKINVS---DRSELTFLVRCAVRALDNVIDLNFFPVPY 535

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK +N  +R +GLG+ G+   L    I + S E + IAD   E+I++ AI AS + A+E+
Sbjct: 536 AKINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEK 595

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y  F GS W  G                  M       W  L+++   +G+RN   +A
Sbjct: 596 GCYEYFPGSGWQTGS--------------YFEMRGYCSDEWRRLREKAAAVGLRNGWLIA 641

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            APT++ + I G +  +DP     Y++   +G    V                       
Sbjct: 642 AAPTSSTSMISGTTAGLDPIMNRFYLEEKKNGLVPRVAP--------------------- 680

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                      +       +  A  ID  W + +A  RQ+ IDQAQS+NLY+ +  + ++
Sbjct: 681 ----------ELTPSTYWRYKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQ 730

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907
           +  +Y  AW  G+KT YY+RS+S
Sbjct: 731 VLELYLLAWKSGVKTIYYIRSKS 753


>gi|315644972|ref|ZP_07898100.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           vortex V453]
 gi|315279683|gb|EFU42985.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           vortex V453]
          Length = 777

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 242/807 (29%), Positives = 380/807 (47%), Gaps = 87/807 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205
           ++  +   ++F+  RL +  +    GL  +  + +L      +  + ++  ++ +A   S
Sbjct: 5   VVKPNNRQLAFDEIRLSVYADRNLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 64

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE PN+    AR  L  L ++  T    +  KA   E    +       +++G+
Sbjct: 65  ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMR 323
               L  S     +  L   +   RD  F+Y+GL  L +RY     +G  +E+PQ  +M 
Sbjct: 122 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLATDFDGRVMELPQERYMV 181

Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
           +AM L   E   ++     E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMFLMHNEPADKRIDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+ V     W+
Sbjct: 302 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGICLPDLFMEAVEAREEWS 361

Query: 501 LFSPDEVSDLHDL-----YGKEFEIAY---------ENYERQADRGEIKVFRKISAVALW 546
           LF P EV  +             E  Y              +A          + A+ + 
Sbjct: 362 LFCPHEVKKIMGWKDENGRPLGLEDFYDQAQGDGEFRQKYAEAVANPQLPRITVQAIDIM 421

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595
           ++++    ETG P++ ++D  N  +P    G+++SSNLCTEI  N S             
Sbjct: 422 KRVMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 481

Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                       +  VCNL SI+L             L   +   VR+LDNVIDIN   +
Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 536

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++  + +S+ELA+
Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 596

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G Y  FKGS W+ G +         E   +      +   W EL++ V+  G+RN+  
Sbjct: 597 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 652

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            AIAP  + + I G + SIDP Y+ L  +      + V N     +L ++ +W       
Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKVANP--APDLSEKTIW------- 701

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
                                + TAF ID  W I+ A+ RQ+ +DQAQS NLY+  +   
Sbjct: 702 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 741

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +   ++  AW  G+K+TYY+RSR+ T
Sbjct: 742 SEFLELHLHAWKAGIKSTYYVRSRALT 768


>gi|323486977|ref|ZP_08092291.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14163]
 gi|323399689|gb|EGA92073.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14163]
          Length = 764

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 239/803 (29%), Positives = 376/803 (46%), Gaps = 104/803 (12%)

Query: 149 MDDGTLISF-NSKRLEMIVEEACSGLQDV---------SSKIVLSETYKNMYDGLSESDL 198
              G+ +S  + + L   + E    L+++         S +++  +    +   +   + 
Sbjct: 11  KTAGSQVSLQSLEHLTREIPELAPALEEIEARWPKEEYSPELLAHKFSAFVKKNMEPEEA 70

Query: 199 ETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
            + LI ++  L  KE P++  + A  LL + R  +     K    + +  ++ L      
Sbjct: 71  LSLLIQAAAELTRKEAPDWEYIAAYLLLVRFRINLREEDKKHGIGSFYDRIRYL------ 124

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM 316
               E +    + E     +L      +  +RD  F Y GL +L  RY +       +E 
Sbjct: 125 --TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLES 182

Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           PQ  F+ +++ LA+KE  ++ K    FY++LS+     +TPTL N+   + QLSSCF+ T
Sbjct: 183 PQEMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDT 242

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           VPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTA
Sbjct: 243 VPDSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTA 302

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           VAV+Q G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +
Sbjct: 303 VAVDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADE 362

Query: 496 --NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             ++ W L  P E+       L D YG+E+E  Y +  +     E    R +    + R 
Sbjct: 363 AIDSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKD----ERIPKRVLPIKDIIRL 418

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596
           +L    ETG P+   +D  N  +P +H G+++ SNLCTEI  N S  E            
Sbjct: 419 ILKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGE 478

Query: 597 -----------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                        VCNL S++L     +   D  +L   +R AVR LDNVID+N   +  
Sbjct: 479 TVVVTVTKPGDFVVCNLASLSLGKINVS---DRSELTFLVRCAVRALDNVIDLNFFPVPY 535

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK +N  +R +GLG+ G+   L    I + S E + IAD   E+I++ AI AS + A+E+
Sbjct: 536 AKINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEK 595

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y  F GS W  G                  M       W  L+++   +G+RN   +A
Sbjct: 596 GCYEYFPGSGWQTGS--------------YFEMRGYCSDEWRRLREKAAAVGLRNGWLIA 641

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            APT++ + I G +  +DP     Y++   +G    V                       
Sbjct: 642 AAPTSSTSMISGTTAGLDPIMNRFYLEEKKTGLVPRVAP--------------------- 680

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                      +       +  A  ID  W + +A  RQ+ IDQAQS+NLY+ +  + ++
Sbjct: 681 ----------ELTPSTYWRYKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQ 730

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907
           +  +Y  AW  G+KT YY+RS+S
Sbjct: 731 VLELYLLAWKSGVKTIYYIRSKS 753


>gi|138894465|ref|YP_001124918.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265978|gb|ABO66173.1| Ribonucleoside-diphosphate reductase alpha subunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 785

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 253/802 (31%), Positives = 379/802 (47%), Gaps = 92/802 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204
           ++ D G   S + +    ++E+A +G   +S +      ++ +   + ++   L    I 
Sbjct: 34  VVDDQGKEKSLSRREFAALIEQATAGFVRLSLEEYEERVWQLLSRKEFVTVDQLYQTAIL 93

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              + I E+EP +  V AR  L  + RE         +     E    +        E+G
Sbjct: 94  EGLSYISEEEPEWTFVCARLYLRMMYREAARQRGYDAR-----ERYGDFYSLIVSLTEQG 148

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           V + LL E     ++    + L  ++D  F Y+GL+ L DRY          E+PQ  F+
Sbjct: 149 VYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLYELPQERFL 208

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +AM L + E    + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L
Sbjct: 209 IIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVDDSL 268

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+V+Q
Sbjct: 269 QAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLNNTAVSVDQ 328

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q   W 
Sbjct: 329 LGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRGDWY 388

Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           LF P EV              +     F   Y      +   + K    + A+ + + ++
Sbjct: 389 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVNDSRLSKEK----VPAIEVMKSIM 444

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595
               E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S                 
Sbjct: 445 RSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQYVKDGTIIIE 504

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +           I   +R+LDNVID+N   + +A  +N 
Sbjct: 505 KIPGDFVVCNLSSINLARAVTDGV-----FERLIPIQLRMLDNVIDLNNIPVLQASLTNK 559

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAV   DE  E I++ AI AS+ELA+E+G+Y  F
Sbjct: 560 KYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLAIQASMELAKEKGSYPGF 619

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +         E R            WD LK+ V   GMRN   MA+AP A+
Sbjct: 620 SGSDWQTGAYF--------ERRGYKNHGE---RDWDRLKREVARYGMRNGYLMAVAPNAS 668

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP ++ +Y +        V       +L ++  W               
Sbjct: 669 TSIIAGSTASIDPIFRKVYAEEKKDYKIPVTVP----DLNEQTTW--------------- 709

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I   + RQ+ IDQA S N Y ++    K+L  ++ 
Sbjct: 710 ------------YYKSAYYIDQRWSIRQNAARQRHIDQAISFNFYVMNTIKAKELLELHL 757

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
            AW  GLKTTYY+RS S T  E
Sbjct: 758 TAWKSGLKTTYYVRSTSGTMEE 779


>gi|196247936|ref|ZP_03146638.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. G11MC16]
 gi|196212720|gb|EDY07477.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus
           sp. G11MC16]
          Length = 760

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 253/802 (31%), Positives = 378/802 (47%), Gaps = 92/802 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204
           ++ D G   S + +    ++E+A +G   +S +      ++ +   + ++   L    I 
Sbjct: 9   VVDDQGKEKSLSRREFAALIEQATAGFVRLSLEEYEERVWQLLSRKEFVTVDQLYQTAIL 68

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              + I E+EP +  V AR  L  + RE         +     E    +        E+G
Sbjct: 69  EGLSYISEEEPEWTFVCARLYLRMMYREAARQRGYDAR-----ERYGDFYSLIVSLTEQG 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322
           V + LL E     ++    + L  ++D  F Y+GL+ L DRY          E+PQ  F+
Sbjct: 124 VYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLYELPQERFL 183

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +AM L + E    + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L
Sbjct: 184 IIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVDDSL 243

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I+ +  + A L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+V+Q
Sbjct: 244 QAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLNNTAVSVDQ 303

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+RKGA+  YL+ WH D+  FLD R N GD+R RTHD+ T   IPDLFM++V Q   W 
Sbjct: 304 LGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRGDWY 363

Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           LF P EV              +     F   Y     +    + K    + A+ + + ++
Sbjct: 364 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVNEPRLSKEK----VPAIEVMKSIM 419

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595
               E+G P++ ++D  N ++P +H+G+++ SNLCTEI  N S                 
Sbjct: 420 RSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQYVKDGTIIIE 479

Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
               +  VCNL SINL     +       L   I   +R+LDNVID+N   + +A  +N 
Sbjct: 480 KIPGDFVVCNLSSINLARAVTDGV-----LERLIPIQLRMLDNVIDLNNIPVLQASLTNK 534

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RA+GLG  G+   L L  I + S EAV   DE  E I++  I AS+ELA+E+G+Y  F
Sbjct: 535 KYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLVIQASMELAKEKGSYPGF 594

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            GS W  G +         E R            WD LK+ V   GMRN   MA+AP A+
Sbjct: 595 SGSDWQTGAYF--------ERRGYKNHGE---RDWDRLKREVARYGMRNGYLMAVAPNAS 643

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G + SIDP ++ +Y +        V       +L ++  W               
Sbjct: 644 TSIIAGSTASIDPIFRKVYAEEKKDYKIPVTVP----DLNEQTTW--------------- 684

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890
                        + +A+ ID  W I   + RQ  IDQA S N Y ++    K+L  ++ 
Sbjct: 685 ------------YYKSAYYIDQRWSIRQNAARQHHIDQAISFNFYVMNTIKAKELLELHL 732

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
            AW  GLKTTYY+RS S T  E
Sbjct: 733 TAWKSGLKTTYYVRSTSGTMEE 754


>gi|307596370|ref|YP_003902687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta distributa DSM 14429]
 gi|307551571|gb|ADN51636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta distributa DSM 14429]
          Length = 895

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 223/857 (26%), Positives = 386/857 (45%), Gaps = 77/857 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203
           +K++  +G    F+  +L   ++     L  V    +V+S    ++   +S S+L   + 
Sbjct: 14  IKVLKRNGNTEDFSRDKLVRSLK-----LAGVPDPDLVISAL--DLRGTVSSSELSDKVQ 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                ++  +  +      +LL  + ++V      K       + +  Y E F  +   G
Sbjct: 67  LIMLNMVTDDLKWHDAARNYLLWSVYKQVWGKDVVKAINEGRVKFEDAYREGFKAWFRTG 126

Query: 264 VKARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
           ++ R+            +  LA  L   RD    Y G++ L  RY L   +GS  E+PQ 
Sbjct: 127 LELRIWDSEMSAWYAQHIDELAKYLDPSRDLLLTYNGVRTLMSRYLLKRLDGSFFEVPQY 186

Query: 320 FFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            +MR AMG+A  E     +       FY+L+S   FM ++PTL+N+ TR  QLS+CF+  
Sbjct: 187 LWMRTAMGVAYAELRYGGDPITWTRRFYDLMSQLRFMPNSPTLYNAMTRLGQLSACFVVP 246

Query: 376 VPDDL--------------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           + D L              +GI  AL+  A++ +  GG+G ++  +R  G  +  T G +
Sbjct: 247 IDDCLSRESDTNREDPECNFGIMDALRLAALIFQSGGGVGYNFGKLRPEGDIVRSTTGIA 306

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F+K+ +     + QGGKR+GA    L  WH D+E+F+  +     D  +  + N 
Sbjct: 307 SGPLSFMKLFDTLVDTIKQGGKRRGAQMGMLFWWHPDIEKFITSKSGELKDI-QLQNFNI 365

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  I D FM++  +     L +P E   L+  +G+EF   YE        G+++++R+++
Sbjct: 366 SVTIDDYFMQKALKGEDIYLINPRECPCLYKTWGEEFVKCYEGCVEAIKAGKVRIWRRVN 425

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           A  LW K++   +++G P +  +D  N   + +    V++++N C+E +L     +   C
Sbjct: 426 AKELWDKIVKSAWDSGDPGLWNRDLANYINNEKLPGEVINATNPCSEESLY----DFESC 481

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINL+ +    + D+D LA  ++ AVR LD+VID+N    E+ +K     R IGLG 
Sbjct: 482 NLGSINLVKYVHEGRIDWDSLARDVQLAVRFLDDVIDVNKLPHERLRKRVLETRRIGLGA 541

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G    L  L + Y SP+A+ +++E   FI+  A+ AS+ELA+E+G Y ++K S W +GV
Sbjct: 542 NGLADTLIALGLRYDSPQALAVSNELASFIARMAVRASIELAKEKGVYPAYKHSDWAEGV 601

Query: 721 FPI--------------------------DSIGLLAEVR----DELAMNRTSRLPWDELK 750
            P                           D      +VR       A+ +  R    +L 
Sbjct: 602 LPWTKHRERLEKFSSTIDKEAVDEYMKTLDVGYNDPKVRAIIDGSTAVLKGYRALDSDLS 661

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V T+G+RN + M+IAP  + + I GV+ SI+P +   Y+++   G     N   +  L
Sbjct: 662 IDVSTVGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKLIEYNYTALRLL 721

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK--KIHATAFEIDPMWLIESASRRQKWID 868
            Q    DE+    ++ +         +P D     +  TA EI   W +       +W D
Sbjct: 722 MQTKTLDESTRRFVEEYG-------ILPRDHPLADLLRTAHEIHWKWHVYMQVTWARWND 774

Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST-LKGVDGKLNAV 926
              S  + +  +   + ++  YR AWL+        R +S +     T +KG + K    
Sbjct: 775 SGVSKTINMPSDTPMEDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGVKGAEAKPTIE 834

Query: 927 PVTDPNSSTHSLGIPSS 943
                  +   +    S
Sbjct: 835 VKEVKVETKPKVETKVS 851


>gi|149182582|ref|ZP_01861053.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
 gi|148849718|gb|EDL63897.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
          Length = 746

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 249/780 (31%), Positives = 369/780 (47%), Gaps = 95/780 (12%)

Query: 164 MIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLIE-KEPNYAKVT 220
            +++E     Q VS +    +    +     ++   L+  LI ++   I  +EP +  V 
Sbjct: 14  RLLKELRERHQSVSFEEYEEKVLDTLEAKGDVTAEQLDNMLILAAVERISSQEPEWTYVA 73

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           A   L KL R    +    P+K         + E   +  E G+    L +     ++  
Sbjct: 74  ADIYLRKLYRASAESRGTDPEKGY-----GSFYEMMAQLEEMGIYDTRLLQKYSRDEIDS 128

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL--KETEKEK 337
           L   +  ERD  F Y+G+  L +RY      G  IE+PQ  FM +AM L     E ++  
Sbjct: 129 LERIINPERDGLFTYIGIVTLAERYLAKSHAGHFIELPQERFMIIAMTLLADEPEEKRLT 188

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
              E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV DDL  I+ +  + + L+K  
Sbjct: 189 LIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVEDDLRSIYDSNTDVSTLSKNG 248

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G     +R  G+ I G  G S G+IP++K  N+TAV+V+Q G+R+GA+  YL+ WH 
Sbjct: 249 GGIGIYLGKIRSRGSDIKGFKGVSSGIIPWMKQLNNTAVSVDQLGQRQGAIAVYLDVWHK 308

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD + N GD+R+RTHD+ T   +PDLFM++V +   W LF P EV  +    G  
Sbjct: 309 DIFPFLDSKLNNGDERQRTHDLFTGVCLPDLFMEQVEKRGDWYLFDPHEVRKVM---GFS 365

Query: 518 FEIAY----------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            E  Y          E Y       E+   + + A+ L++ ++    ETG P++ ++D  
Sbjct: 366 LEDHYDEQPGQGSFREKYWACVFHPELS-HQTVPAIELFKSIMISQLETGTPYMFYRDTV 424

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLL 608
           N  +  QH G+++ SNLCTEIT N S                     +  VCNL S++L 
Sbjct: 425 NRFNANQHKGMIYCSNLCTEITQNMSATVMEEERVEDGTIITYKKPGDYVVCNLSSLSLA 484

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               +       L   I  AVR+LDNVIDIN   + +A+ +N  +R IGLG  G+   L 
Sbjct: 485 KAVQDGV-----LKEVISIAVRMLDNVIDINDIPVLQAQLTNERYRGIGLGTYGWHHLLA 539

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L  I + S EA+E  D   E I+F  I AS  LA+E+GAY  F GS W  G         
Sbjct: 540 LKGIKWESEEALEYCDSLYEDIAFFTIKASAALAKEKGAYPYFTGSEWAAGS-------- 591

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                        +   W ELK+ VK  G+RN   MA+AP+++ + I G + SIDP ++ 
Sbjct: 592 ------YFEKRDYTSPRWLELKEEVKEHGVRNGYLMAVAPSSSTSLIAGSTASIDPVFRL 645

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            Y +        V                                   +       + TA
Sbjct: 646 EYSEEKKDYKIPVTAP-------------------------------DLSPHTTWYYKTA 674

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           + ID  W I+  ++RQ+ IDQ+ S NLY+ ++   K L  I+  AW  GLKTTYY+RS S
Sbjct: 675 YNIDQHWSIKQNAKRQRHIDQSISFNLYVRNDIKAKALLDIHLHAWKAGLKTTYYVRSTS 734


>gi|332971064|gb|EGK10034.1| ribonucleotide-diphosphate reductase alpha subunit [Desmospora sp.
           8437]
          Length = 749

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 240/789 (30%), Positives = 362/789 (45%), Gaps = 94/789 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211
             I  + + LE  +++  S    +     +++   +  +  S   +   +I  +   +  
Sbjct: 10  ETIPRDRQALEGFLQQLMSDFPRLDLHEYVAQQLHSFREEDSVDRIADRMILDALERVSG 69

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           +EP++  V +R  L +L  E               +    + E      E GV + LL E
Sbjct: 70  EEPDWTFVASRIYLLRLYEEA------SRHPFRQGKPYGDFYELIRGLTESGVYSPLLLE 123

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330
           +    ++  LA  ++ ERD  F Y GL+ L DRY      G   E+PQ  F+ +AM L  
Sbjct: 124 TYTRAEIGELAMMIRPERDHLFTYAGLRTLADRYLARSREGELYELPQERFLVIAMVLMS 183

Query: 331 KETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
           +E    +     E Y  LS+ +   +TPTL N+G    QLSSCF+  V D L GI+ +  
Sbjct: 184 REERERRLHWVREAYWALSNLYMTVATPTLSNAGKDFGQLSSCFVDVVDDSLQGIYDSNT 243

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A ++K  GGLG     +R  G+ I G  G S GVIP++K  N+TAV+V+Q G+RKG++
Sbjct: 244 DVARVSKGGGGLGVYLGKIRSRGSDIKGYKGISSGVIPWMKQLNNTAVSVDQLGQRKGSI 303

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ WH D+  FLD + N GD+R RTHD+ T   IPDLFM+ V     W LF P ++ 
Sbjct: 304 AVYLDIWHQDILSFLDAKLNNGDERLRTHDLFTGVCIPDLFMEAVEAREDWHLFDPHQIR 363

Query: 509 D----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                              F   Y       +         + A+ L ++++    ETG 
Sbjct: 364 RVMGWSLEDFYDEKRGEGSFREKYAACVEHPELDRT----TVPAIELMKRIMVSQLETGT 419

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAV 599
           P++ ++D  N ++P  H G+++ SNLCTEI  N S                     +  V
Sbjct: 420 PYMFYRDEANRKNPNHHAGLIYCSNLCTEIMQNMSPTLLREERVEEGKILITKEPGDFVV 479

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL SINL     +       L   I   VR+LDNVID+N   + +A+ +N  +RAIGLG
Sbjct: 480 CNLSSINLGRAVPDGV-----LKRLIPVQVRMLDNVIDLNTIEVPQARITNQKYRAIGLG 534

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G+   L +  I + S EAV   +E    I++  I AS+ELA+E+G Y  F GS W  G
Sbjct: 535 TFGWHHLLAVKGIRWESEEAVRFGEELYGEIAYLTIRASMELAREKGPYPLFAGSDWQTG 594

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                    PW  L + V+  G+RN+  MA+AP A+ + I G +
Sbjct: 595 --------------AYFEKRGLREEPWHSLAEDVRHHGLRNAWLMAVAPNASTSLIAGST 640

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            SIDP ++  Y +   +    V                                   +  
Sbjct: 641 ASIDPVFRREYSEEKKNYKIPVTAP-------------------------------DLTP 669

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           +    +  A EID  W +  A+ RQ++IDQ+QSLNLY+  +   + L  ++  AW  GLK
Sbjct: 670 ETGWYYKPAHEIDQRWSLRQAAARQRYIDQSQSLNLYVRHDIKARDLLDLHLTAWKSGLK 729

Query: 899 TTYYLRSRS 907
           TTYYLRS +
Sbjct: 730 TTYYLRSTA 738


>gi|225386406|ref|ZP_03756170.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme
           DSM 15981]
 gi|225047487|gb|EEG57733.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme
           DSM 15981]
          Length = 761

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 238/789 (30%), Positives = 375/789 (47%), Gaps = 97/789 (12%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSK-IVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE 213
            F    +E  +E           +  +LS  +++    G+  ++L  +LI S+  L  +E
Sbjct: 22  PFEGGAVEACLEGIRQDFPGQEYELEILSNKFRSFRKPGMKRTELYDSLIQSAAELTSRE 81

Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            P +  + AR    +   E+   +        + ++  L          EG+    + E 
Sbjct: 82  APRWEFIAARIRYSQFGEELEERLAGLGISGFYDKLVYL--------TREGLYGDYILEH 133

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALK 331
             + ++      L  ER+  F Y GL +L  RY +  +    +E PQ  ++ +A+ LA++
Sbjct: 134 YTEAEIREAETFLDPERNKLFTYSGLDLLIKRYVIQNHKRQPLETPQEMYLGIALHLAME 193

Query: 332 ET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           E    +      FY++LS+     +TPTL N+     QLSSCF+ TVPD L GI+ ++  
Sbjct: 194 EKPDCRMAWVRRFYDMLSNMQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEGIYRSIDN 253

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A ++K+ GG+G  +  VR  G  I G  G + GVI ++K+ NDTAVAV+Q G R+GAV 
Sbjct: 254 FAQVSKFGGGMGLYFGKVRATGGSIRGFEGAAGGVIRWVKLVNDTAVAVDQLGMRQGAVA 313

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV 507
            YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +  N  W L  P E+
Sbjct: 314 VYLDAWHKDLPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKMAKEDLNQPWHLMCPHEI 373

Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                  L D +G+E+E  Y +        +    R ++   + R +L    ETG P+  
Sbjct: 374 LQVKGYSLEDSFGEEWERRYLDCVADGRISK----RTVALKDIVRLILRSQVETGTPFTF 429

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSEETAV 599
            +D  N  +P  H G+++ SNLCTEI  N                       + + E  V
Sbjct: 430 NRDVVNRANPNGHKGMIYCSNLCTEIAQNMAGIETVSTEIREENGDTVVVTTTKAGEFVV 489

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+ L         D   + +   +AVR LDNVI +N + +  AK +N  +R+IGLG
Sbjct: 490 CNLASLCLGNIDVT---DEAAVRAVTASAVRALDNVIGLNFYPLPYAKITNRRYRSIGLG 546

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G+   L    I + S E +  ADE  E I+F A+ AS +LA E+G+Y  F+GS W+ G
Sbjct: 547 VSGYHHMLAKNGIAWESEEHLRFADEVFERINFAAVEASSDLAAEKGSYDYFEGSDWETG 606

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                 +   WD L+++V   GMRN+  +A+APT++ + +CG +
Sbjct: 607 --------------AYFDKRGYTGEKWDGLRRKVARQGMRNAYLVAVAPTSSTSILCGTT 652

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             +DP  +  +++         V      EL  R  W                       
Sbjct: 653 AGVDPVMKRYFLEEKKHAILPRVAP----ELTPRTYW----------------------- 685

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
               ++  A  +D  W + +A  RQ+ IDQAQS+NLY+ +E + +++  +Y QAW  G+K
Sbjct: 686 ----LYKEAHLVDQTWSVRAAGARQRHIDQAQSVNLYITNEYTMRQVLNLYIQAWEEGVK 741

Query: 899 TTYYLRSRS 907
           T YY+RS++
Sbjct: 742 TIYYVRSKA 750


>gi|167748342|ref|ZP_02420469.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662]
 gi|167652334|gb|EDR96463.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662]
          Length = 763

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 230/795 (28%), Positives = 384/795 (48%), Gaps = 97/795 (12%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSS 206
           +++      F    L   ++      Q+  S  +L+E +++ + +G+ + +    L+ ++
Sbjct: 20  ILESFRTEEFPIGDLLKSIQN--EFPQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAA 77

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  +E P +  + AR  + +    V   + +   +  + ++  L         ++ + 
Sbjct: 78  AELTSQEAPKWENIAARLKILEFESVVKNNLEEYQIRNFYEKIVVLS--------QQNLY 129

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
              + ++  + ++   ++ ++ ER+  F Y GL++L  RY +    G+ +E PQ  FM +
Sbjct: 130 GDYILKNYAEDEIHLFSSWIRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGI 189

Query: 325 AMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           AM LA+KE  ++ +    FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 190 AMHLAMKETEDRNQWVKRFYDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 249

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G 
Sbjct: 250 YRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGM 309

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GD+R + HD+  A   PD F ++   N    W L
Sbjct: 310 RQGAVAVYLDVWHRDLPEFLSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGSWYL 369

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG E+   Y +        E    R I    + R ++    ET
Sbjct: 370 MCPHEILTVKGYALEDCYGTEWTEKYLDCV----LDERISKRVIPIKDIVRMIIKSAAET 425

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +P +H G+++ SNLCTEI  N S                       
Sbjct: 426 GTPFTFNRDHVNRANPNRHKGIIYCSNLCTEIAQNMSASGQIEQKIEMIGGEEVVVTVTK 485

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S++L         DY++L+    +AVR LDNVID+N   +  A+ ++  +
Sbjct: 486 PGDFVVCNLASLSLGNLCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRY 542

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG+ G+   L    I + S E ++ A++    I + A++AS ++++E+G+Y  F G
Sbjct: 543 RPVGLGVSGYHHMLAKHKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPG 602

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G              D       ++  W  L+ R+K  G+RN   +A APT++ +
Sbjct: 603 SDWQTG--------------DYFRKRDLTKGRWKALEDRIKKHGLRNGYLLAAAPTSSTS 648

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G +  +DP     +++    G    V      EL     W                 
Sbjct: 649 IIAGTTAGLDPVMNRYFLEEKKYGLIPRVAP----ELSMETFW----------------- 687

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
                      +  A  ID  W +++   RQ+ IDQAQS+NLY+ +E + +K+  +Y  A
Sbjct: 688 ----------YYKNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILA 737

Query: 893 WLMGLKTTYYLRSRS 907
           W  G+KT YY RS+S
Sbjct: 738 WEQGVKTIYYTRSKS 752


>gi|61806079|ref|YP_214439.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|61374588|gb|AAX44585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|265525291|gb|ACY76088.1| NrdA [Prochlorococcus phage P-SSM2]
          Length = 775

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 203/825 (24%), Positives = 342/825 (41%), Gaps = 74/825 (8%)

Query: 146 KIMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
            +   +G  +   N +++ ++ EEAC GL  VS+  V  ++    YDG++ ++++  LI 
Sbjct: 6   TVKKRNGRGVEPLNLEKIHVMCEEACEGLAGVSASQVEIQSGIQFYDGITTAEIQEILIR 65

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI+   PNY  V AR LL  LR+++   + + P             ++  + +++G
Sbjct: 66  SASDLIDLDHPNYQFVAARLLLFSLRKQLFGRLRECPTVI----------DHVQKCVKKG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
           +    + +   + +   L + + + RDF F Y GL+ + D+Y       G   E PQ  +
Sbjct: 116 IYDAEILDLYSEEEYNRLQSFIDHSRDFLFTYAGLRQVVDKYLVQDRSTGEVYETPQFMY 175

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A  +     +  +     ++Y+ +S       TP +    T   Q +SC L  + D 
Sbjct: 176 LMIAATIFSKYPKETRLDYVRKYYDAISRHRINIPTPIMAGVRTPIRQFASCVLVDIDDT 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ A I G   +  GV+PFLK    T     
Sbjct: 236 LDSIFSSDMAIGKYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVVPFLKKFESTVRCCT 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++ + L L+ N G +  R   ++ +  +  LF +R  QN   
Sbjct: 296 QNGIRGGSATVHFPIWHQEISDILVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIQNLPI 355

Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           TLFSP +V  L+D +G   F+  Y  YE      E      I A  L   +L    ETG 
Sbjct: 356 TLFSPHDVPGLYDAFGSDTFDELYTQYE----SDESIPRTTIGAQELILDLLKERAETGR 411

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL---AHFANNQ 615
            ++   D CN  S       V  SNLC EITL +   +      G I L    A      
Sbjct: 412 IYLMNIDHCNSHSSFLDK--VEMSNLCQEITLPTKPIQHIDDETGEIALCILSAINIGKI 469

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D   L      ++R LD +ID   + +  A+ +    R++G+G +G    L    + Y 
Sbjct: 470 RDVSDLEGLCDLSIRSLDELIDFQGYPVRAAEIATKARRSLGVGFIGLAHYLAKQGVKYE 529

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            PEA ++  +  E   ++ I +SV LA+E+GA +    + + QG+ PID+     +    
Sbjct: 530 DPEAWKLVHDLTEVFQYNLIKSSVNLAKEKGACTYSDRTKYSQGILPIDTYKQDVDE--- 586

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +       W+ L++ VK  G+RNS   A  P+ + + +C  +  I+P    L +K + 
Sbjct: 587 -LVPNNLSCDWESLREDVKQYGIRNSTLSAQMPSESSSVVCNATNGIEPPRGYLSIKKSK 645

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G    +     N LK     +  ++ D+  + G                          
Sbjct: 646 KGPLKQIVPSY-NTLK----NNYTLLWDMPNNTG-------------------------- 674

Query: 856 LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I   +  QK+ DQA S N   +       E     +       +  G KT+YY  +   
Sbjct: 675 YINIVAVMQKFFDQAISGNWSYNPQHFDEGEVPTSVMAQDLLTTYKYGWKTSYYQNTYDV 734

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            + E   +       N V +     ST    + S   +  ECE C
Sbjct: 735 KTDE---IDLSVSNPNDVGIQG---STRLENLISELENQEECESC 773


>gi|301792342|ref|XP_002931138.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Ailuropoda melanoleuca]
          Length = 477

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 280/490 (57%), Gaps = 18/490 (3%)

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           KNTG + +R  D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE
Sbjct: 1   KNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYE 60

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +Q      +V + + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCT
Sbjct: 61  KQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCT 115

Query: 587 EITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           EI   +S +E AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + +
Sbjct: 116 EIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPE 175

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A  SN  HR IG+G+ G   A  L+  P+ SPEA  +  +  E I + A+ AS +LA+E 
Sbjct: 176 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREH 235

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y +++GS   +G+   D   +            T    W  LK+++   G+RNS  +A
Sbjct: 236 GPYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIA 285

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ A I G ++SI+P   N+Y +  +SG+F +VN  L+ +L +R LW+E M + + 
Sbjct: 286 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQII 345

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
             +GSI +I  IPDDLK+++ T +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL
Sbjct: 346 ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL 405

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSS 943
             ++   W  GLKT  YYLR+R A +  + TL              +     ++  +  S
Sbjct: 406 TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCS 465

Query: 944 CTSDTECEVC 953
             +  EC +C
Sbjct: 466 LENREECLMC 475


>gi|326781923|ref|YP_004322325.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
 gi|310003113|gb|ADO97511.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
          Length = 765

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 189/825 (22%), Positives = 336/825 (40%), Gaps = 84/825 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K+   DG +   + +++ ++VEEAC GL  VS+  V  ++    YDG++ ++++  LI +
Sbjct: 6   KVKKRDGRIEPLDLEKMHLMVEEACQGLAGVSASQVEMKSGIQFYDGITTAEIQEILIKA 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  LI+   PNY  V AR LL  LR+ +   + + P   T          +    + + V
Sbjct: 66  ASDLIDLDHPNYQFVAARLLLFSLRKSLYGKMRELPHLET----------HINDCVGKEV 115

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322
               ++      ++  + + + + RDF F Y GL+ + D+Y       G   E PQ  +M
Sbjct: 116 YDSDIYTKYSKEEIEKVNSYIDHNRDFLFTYAGLRQVVDKYLVQDRSGGGVYETPQFMYM 175

Query: 323 RVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A+ +     +  +      +Y+ +S       TP +    T   Q +SC L  V D L
Sbjct: 176 MIALTIFREYPKETRLSYVKRYYDAISKHRINIPTPIMAGVRTPLRQFASCVLVDVDDTL 235

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF +            G+G +   +RG+ + I G   +  GV+PFLK    T     Q
Sbjct: 236 DSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCCTQ 295

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R   +   +
Sbjct: 296 NGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIADGEIS 355

Query: 501 LFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           LFSP +V  L+D +G + F+  Y +YE           + + A  L   +L    ETG  
Sbjct: 356 LFSPHDVPGLYDAFGTDAFDARYVDYESDQSIPR----KTVRAQELILNLLKERAETGRI 411

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL---AHFANNQF 616
           ++   D CN  S  +    V  SNLC EITL +   +        I L    A       
Sbjct: 412 YLMNIDHCNSHSSFKDK--VEMSNLCQEITLPTYPLQHIDDEGAEIALCILSAINVGKVR 469

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
             ++L      +VR L+ +ID   + ++ A+++    R++G+G +G    L  L   Y S
Sbjct: 470 SDEELEELCDLSVRGLEELIDYQEYPVKAAERATKARRSLGIGFIGLAHYLAKLGYKYDS 529

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA +      E   ++ + +S ++A+E+G  + F  + +  G+ PID+     +  DE+
Sbjct: 530 QEAWDAVHGLSESFQYYLLKSSNQIAKEKGWCADFGRTKYSDGILPIDTY---KKDVDEI 586

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
                +   W+ L+  +   G+R+S   A  P+ + + +   +  I+P    L +K +  
Sbjct: 587 TTEGLAH-DWESLRASILEHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSIKKSKK 645

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI-DPMW 855
           G    +                          GS          LK  +   +++     
Sbjct: 646 GPLKQIVP----------------------QYGS----------LKNNYTLLWDMESNRG 673

Query: 856 LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I   +  QK+ DQA S N          +E     +   +   +  G KT+YY      
Sbjct: 674 YINVVAVMQKFFDQAISGNWSYNPENYPDNEVPVSTMAQDFLTTYKYGWKTSYY------ 727

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               ++T      ++        N              + ECE C
Sbjct: 728 ----QNTHDMKSDEVEEEKSELHNILNELEQA-----EEGECESC 763


>gi|310831538|ref|YP_003970181.1| putative ribonucleotide reductase large subunit [Cafeteria
           roenbergensis virus BV-PW1]
          Length = 922

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 223/941 (23%), Positives = 383/941 (40%), Gaps = 170/941 (18%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   + +  ++   + +  +G   +++    ++ +T  ++Y G++  +L+    
Sbjct: 17  YVIKRDGRRENVHFDKITQRISKLLTGNMNKNIDIINIVKKTITSIYPGITTKELDNQSA 76

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           +    +     +YA +  R  +  L +E + T  +K +     +   +Y   +  +I++ 
Sbjct: 77  YQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEKMELIN--DNLHIYDSEWIEFIKKH 134

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                            L   + Y RD++F++ G++ +   Y   ++G  IE PQ  FMR
Sbjct: 135 R--------------NKLNKIIDYNRDYSFDFFGIKTMERTYITKLDGHLIERPQDVFMR 180

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VA  +   +    ++ ++ YNL+S  +F  ++PTLFN+G +   L SCFL    D + GI
Sbjct: 181 VASLVHCGD---LQKTIDSYNLMSKKYFTHASPTLFNAGNKKGNLVSCFLLGTEDSMTGI 237

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
                + A ++K+ GG+G   + VR  G+ I  TNG S G++P L+V N     VNQ G+
Sbjct: 238 SKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGHSDGIVPMLQVYNSICRYVNQSGR 297

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           RKG+   YLE  H D+ +FL+LRKNTG +  R  D+  A W+ DLFM +V  N  W LF 
Sbjct: 298 RKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLFLALWVSDLFMNQVKLNNDWYLFC 357

Query: 504 P------DEVSDLHD---LYGKEFEIAYENYERQ-------------------------A 529
           P      ++V         +    E  Y    +                           
Sbjct: 358 PDKAPGLNDVYGDEYETLYWKYVSEEKYNKKIKARKLWEAIMTAQFETGSPYMLYKDNIN 417

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFET----------GHPWITFKDPC--NIRSPQQHVG 577
            +   K    I +  L  +++     T            P          N         
Sbjct: 418 KKSNQKNIGIIRSSNLCAEIVEYSDSTETAACNLASIALPNFIKSKNVSDNGWIVYSKPN 477

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLA---------------------------- 609
            ++   +   +   +   E  +  + S+ L                              
Sbjct: 478 CIYCKWIKQMLINKNIKFEEKLIEIDSVELYNLKQKIGKELITFPQVFLNNTLIGGMEET 537

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
             +    +DY+KL +      + LD+VID N +  +++++SN  HR IGLG+ G    L 
Sbjct: 538 WIYFGKDYDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLA 597

Query: 669 LLHIPYASPEAVEIADES------------------------------------------ 686
           LL +PYAS  A++I ++                                           
Sbjct: 598 LLRVPYASKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEF 657

Query: 687 ----MEFISFHAIS---------ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
                E                   ++  Q  GAYS+F+GS + +G              
Sbjct: 658 YDDNFECYPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEGKLQYHLWNRTPINI 717

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
             L         WD L   +K  G RNS   A+ PTA+ + + G  +S +P   N+Y + 
Sbjct: 718 STL----IEGKSWDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRR 773

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            ++G+F VVN  L+N+L +   W   +   +   +GSI NI  +P+ +K I+ T++E+  
Sbjct: 774 TLAGEFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQ 832

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912
            ++I+  S R  +IDQ QS+NLY  +P  +KL      AW  GLKT  YYLRS+ + +  
Sbjct: 833 KYIIDGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANAT 892

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           K T+               N+S + +   +    D  C +C
Sbjct: 893 KITV-------------LLNNSQNKINSQNMMEEDEGCVMC 920


>gi|308067266|ref|YP_003868871.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
 gi|305856545|gb|ADM68333.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
          Length = 777

 Score =  460 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 240/811 (29%), Positives = 380/811 (46%), Gaps = 95/811 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205
           +   +   ++F+  R+ +  +   SGL  +    ++      +  D ++  D+  A   +
Sbjct: 5   VTKPNNRQLAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDDISNAFAMA 64

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE P++    AR LL  L ++  T    +  K+   E    +       ++ G+
Sbjct: 65  ALELVSKEEPDWKFAAARALLTSLYKKAAT---HRRYKSYADEPYGAFYPLITDLVQRGI 121

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
             + L +      +  L + +  + D  F+Y+GL  L +RY  +  +G  +E+PQ  +M 
Sbjct: 122 YRQELLDYYTKEQIDELGDSILPKNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMI 181

Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
           +AM L  +E   ++ +   E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 182 IAMYLMHQEPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+RV     W 
Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWN 361

Query: 501 LFSPDEVSD------------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           LF P EV                            F   YE   +      I     + A
Sbjct: 362 LFCPHEVKKVMGWKDDNGRPLGLEDFYDETFGSGTFREKYEEASQHPILSRI----TVPA 417

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593
           + + ++++    ETG P++ ++D  N  +P +  G+V+SSNLCTEI  N S         
Sbjct: 418 IDIMKRLMKSQLETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEEL 477

Query: 594 --------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                           +  VCNL SI+L         D       +   VR+LDNVIDIN
Sbjct: 478 VTKDGQTRIVISKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDIN 532

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++ A+ +S+
Sbjct: 533 NIEVLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSM 592

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+G Y+ F+GS W  G +             +      +   W EL + VK  G+R
Sbjct: 593 ELAKEKGRYAKFEGSDWSTGHYFTSRGYTDGTREGKF----VTTSEWSELSEEVKQNGVR 648

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+   AIAP  + + I G + SIDP Y+ L  +      + + N     +L ++ +W   
Sbjct: 649 NAWLFAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKIANP--APDLNEKTIW--- 701

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                    + TAF +D    I  AS RQ+ IDQ QS NLY+  
Sbjct: 702 ------------------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYVRP 737

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +    +   ++  AW  G+K+TYY+RSR+ T
Sbjct: 738 DIKATEFLELHIHAWKSGMKSTYYVRSRALT 768


>gi|160937687|ref|ZP_02085047.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439332|gb|EDP17084.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC
           BAA-613]
          Length = 748

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 240/789 (30%), Positives = 366/789 (46%), Gaps = 97/789 (12%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSS--KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213
             + K LE  +EE     Q        +L         G+  ++   ALI S+  L  KE
Sbjct: 9   DLDYKGLEQCLEEIGRDFQGEGYGLDRLLERYRSFRKPGMGPAEGMEALIRSAAELTSKE 68

Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
            P +    AR        EV   +     K  + ++  L         E+G+    + + 
Sbjct: 69  TPLWEFAAARLRYCGFACEVEEQLKGLGIKGLYEKISYL--------TEQGLYGDYILKH 120

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
               ++      L  ER+  F Y GL +L  RY +   +   +E PQ  ++ +++ LA+K
Sbjct: 121 YSREEIEEAEGFLDDERNKLFTYAGLDLLLKRYVIQDHSHHPLETPQEMYLGISLHLAMK 180

Query: 332 E--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           E    + +    FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ ++  
Sbjct: 181 ESKDCRMQWVRRFYDMLSRMQVTMATPTLSNARKPYHQLSSCFIDTVPDSLEGIYRSVDN 240

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ NDTAVAV+Q G R+GA  
Sbjct: 241 FAQVSKFGGGMGLYFGKVRATGSRIRGFEGAAGGVIRWIKLVNDTAVAVDQLGMRQGAAA 300

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV 507
            YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   +N    W L  P E+
Sbjct: 301 VYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCFPDLFWKMAEENLDQDWHLMCPHEI 360

Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                  L D YG+ +E  Y +        +    R +    + R ++    ETG P+I 
Sbjct: 361 RTVKGYCLEDCYGELWEERYLDCVGDDRISK----RTVLLKDVVRLIIKSAVETGTPFIF 416

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAV 599
            +D  N  +P  H G+++ SNLCTEI  N S  E                         V
Sbjct: 417 NRDTVNRANPNSHRGIIYCSNLCTEIAQNMSPIESVSTQVLEVNGETAVVQTTRPGDFVV 476

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S+ L A   +   D D++     +AVR LDNVID+N + +  A  +N  +R IGLG
Sbjct: 477 CNLASLCLGAIDVD---DPDEVEYIAASAVRALDNVIDLNFYPLAYAGITNQNYRGIGLG 533

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G+   L    I + S E +  AD+  E I + A+ AS  LA E+G Y  F+GS W  G
Sbjct: 534 VSGYHHMLAKHGIRWESEEHLVFADQVFERIHYAAVRASANLAAEKGCYRYFEGSEWQTG 593

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                                     W EL ++V   GMRN+  +A+APT++ + + G +
Sbjct: 594 --------------AYFEKRGLVSREWKELAEQVAEHGMRNAYLLAVAPTSSTSILSGTT 639

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             +DP  +  Y++   +     V      +L  R  W                       
Sbjct: 640 AGLDPVMKRFYLEEKKNAILPRVAP----DLTPRTFW----------------------- 672

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
               ++ + + +D  W + +A  RQ+ IDQAQS+NLY+ ++ + ++L  +Y  AW  G+K
Sbjct: 673 ----LYKSGYTMDQTWTVRAAGVRQRHIDQAQSVNLYITNDYTMRQLLNLYILAWESGVK 728

Query: 899 TTYYLRSRS 907
           T YY+RS+S
Sbjct: 729 TLYYVRSKS 737


>gi|325663146|ref|ZP_08151596.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470600|gb|EGC73830.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 750

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 245/770 (31%), Positives = 372/770 (48%), Gaps = 95/770 (12%)

Query: 173 LQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230
           L  V S   L E Y   Y  G S  +    L+ ++  L  +E P +  + AR  L   R 
Sbjct: 30  LDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWEMIAARIRLVTFRN 89

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E+   + ++   + + ++  L         +E +    + E+  + ++      ++ ERD
Sbjct: 90  ELKEQMKQRNVNSFYEKICYL--------TKENLYGAYILENYTEEEITAFEKLMREERD 141

Query: 291 FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSS 348
             F Y GL++L +RY +    G  +E PQ  F+ +AM LA+KE   +     +FYN+LS 
Sbjct: 142 HLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDRSGWVEKFYNMLSK 201

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                +TPTL N+   H QLSSCF+ TVPD L GI+ ++   A ++K  GG+G  +  VR
Sbjct: 202 LQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSKLGGGMGMYFGKVR 261

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL+LR N
Sbjct: 262 ASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLNLRTN 321

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521
            GDDR + HD+      PD F ++   N    W L  P E+       L D +G+E++  
Sbjct: 322 NGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGYALEDSFGEEWKKK 381

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y +     +  +    R I    + R ++  + ETG P+   +D  N  +P  H G+++ 
Sbjct: 382 YLDCVADPEIQK----RVIPIKDVIRMIIKSVVETGTPFAFNRDHVNRANPNSHKGIIYC 437

Query: 582 SNLCTEITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQFDY 618
           SNLCTEI  N S                         E  VCNL S++L     N   + 
Sbjct: 438 SNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASLSLGRIDVN---NK 494

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L+   +TAVR LDNVID+N   +  AK +N  +R IGLG+ G+   L    IP+ S E
Sbjct: 495 EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKNEIPWESEE 554

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            +  A+     I + A+ AS ELA+E+G+Y+ F+GS W  G              +  A 
Sbjct: 555 HLAFAERVFAEIHYAAVEASAELAKEKGSYTYFEGSKWQTG--------------EYFAE 600

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W  L K++   GMRN   MAIAPT + + I G +  IDP     +++   SG 
Sbjct: 601 RHLTEDRWKNLAKKIMENGMRNGYLMAIAPTGSTSMIAGTTAGIDPVMSRYFLEEKKSGI 660

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V   L  +      W                            +  A  ID  W + 
Sbjct: 661 LPRVAPELTMD----TFW---------------------------YYKNAHHIDQTWSVR 689

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +   RQ++IDQAQS+NLY+ +E + +K+  +Y  AW  G+KT YY+RS+S
Sbjct: 690 ACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIRSKS 739


>gi|331086749|ref|ZP_08335826.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409915|gb|EGG89350.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 750

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 246/770 (31%), Positives = 373/770 (48%), Gaps = 95/770 (12%)

Query: 173 LQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230
           L  V S   L E Y   Y  G S  +    L+ ++  L  +E P +  + AR  L   R 
Sbjct: 30  LDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWEMIAARIRLVTFRN 89

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E+   + ++   + + ++  L         +E +    + E+  + ++      ++ ERD
Sbjct: 90  ELKEQMKQRNVNSFYEKICYL--------TKENLYGAYILENYTEEEITAFEKLMREERD 141

Query: 291 FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSS 348
             F Y GL++L +RY +    G  +E PQ  F+ +AM LA+KE   +     +FYN+LS 
Sbjct: 142 HLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDRSVWVEKFYNMLSK 201

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                +TPTL N+   H QLSSCF+ TVPD L GI+ ++   A ++K  GG+G  +  VR
Sbjct: 202 LQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSKLGGGMGMYFGKVR 261

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL+LR N
Sbjct: 262 ASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLNLRTN 321

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521
            GDDR + HD+      PD F ++   N    W L  P E+       L D +G+E++  
Sbjct: 322 NGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGYALEDSFGEEWKKK 381

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y +     +  +    R I    + R ++  + ETG P+   +D  N  +P  H G+++ 
Sbjct: 382 YLDCVADPEIQK----RVIPIKDVIRMIIKSVVETGTPFAFNRDHVNRANPNSHKGIIYC 437

Query: 582 SNLCTEITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQFDY 618
           SNLCTEI  N S                         E  VCNL S++L     N   + 
Sbjct: 438 SNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASLSLGRIDVN---NR 494

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L+   +TAVR LDNVID+N   +  AK +N  +R IGLG+ G+   L    IP+ S E
Sbjct: 495 EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKNEIPWESEE 554

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            +  A+     I + A+ AS ELA+E+G Y+ F+GS W  G              +  A 
Sbjct: 555 HLAFAERVFAEIHYAAVEASAELAREKGCYTYFEGSKWQTG--------------EYFAE 600

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W +L K+V+  GMRN   MAIAPT + + I G +  IDP     +++   SG 
Sbjct: 601 RHLTEDRWKKLAKKVRENGMRNGYLMAIAPTGSTSMIAGTTAGIDPVMSRYFLEEKKSGI 660

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V   L  +      W                            +  A  ID  W + 
Sbjct: 661 LPRVAPELTMD----TFW---------------------------YYKNAHHIDQTWSVR 689

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +   RQ++IDQAQS+NLY+ +E + +K+  +Y  AW  G+KT YY+RS+S
Sbjct: 690 ACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIRSKS 739


>gi|67598375|ref|XP_666214.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis TU502]
 gi|54657163|gb|EAL35983.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis]
          Length = 526

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 181/524 (34%), Positives = 289/524 (55%), Gaps = 29/524 (5%)

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           K  +  YLE WH+DV EF+++RKN G +  R  D+  A W+PDLFM+RV ++  WTL  P
Sbjct: 15  KVPIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCP 74

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           DE   L D++G +F+  YE YE+Q      +  + + A  LW  +L    ETG P+I +K
Sbjct: 75  DECRGLQDVWGDDFKKLYEEYEKQ-----GRGRKTMKAQKLWFLILQAQIETGTPFICYK 129

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622
           D  N +S Q+++G + SSNLCTEI   +S +E AVCNL SI L      N   FD+DKL 
Sbjct: 130 DAANSKSNQKNLGTIVSSNLCTEIIEYTSKDEVAVCNLASIGLPKFVDKNNKTFDFDKLK 189

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              +   R L+ +ID+  +++++ K SN  HR +G+G+ G      +L +PY S  A ++
Sbjct: 190 EVTKVITRNLNKLIDVGYYSLKECKNSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKL 249

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  E I + A+ AS ELA++ G Y ++ GS   +G+   D  G+  +         + 
Sbjct: 250 NKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD---------SG 300

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              WD LK R+   G+RNS  ++  PTA+ + I G ++S +P   N+Y +  +SG+F VV
Sbjct: 301 LCDWDSLKDRISKYGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVV 360

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N  L+N+L +  LWD+ +  ++  ++GSI NI  IP+D+++++ T +EI    +I+ A+ 
Sbjct: 361 NPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAAD 420

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921
           R  ++ Q+QSLN++++  +  KL  ++   W  GLKT  YYLR++SAT   + T+     
Sbjct: 421 RGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLL 480

Query: 922 KLNAVPVTDPNSSTHSLGIPSS------------CTSDTECEVC 953
           K          ++      P +               D EC +C
Sbjct: 481 KSETKEKDSLETNKRQALEPETQKLIACPLRPTNMKDDEECMMC 524


>gi|310639979|ref|YP_003944737.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309244929|gb|ADO54496.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 812

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 238/811 (29%), Positives = 381/811 (46%), Gaps = 95/811 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205
           +   +   ++F+  R+ +  +   SGL  +    ++      +  D ++  ++  A   +
Sbjct: 40  VTKPNNRQLAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDEISNAFAMA 99

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L+ KE P++    AR LL  L ++  T    +  K+   E    +       +++G+
Sbjct: 100 ALELVSKEEPDWKFAAARALLTSLYKKAAT---HRRYKSYADEPYGAFYPLITDLVQKGI 156

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
             + L +      +  L + +  + D  F+Y+GL  L +RY  +  +G  +E+PQ  +M 
Sbjct: 157 YRQELLDCYTKEQIDELGDSILPQNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMI 216

Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
           +AM L  +E   ++ +   E Y  +S+ +   +TPT+ N+G +   QLSSCF+ TV D L
Sbjct: 217 IAMYLMHQEPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 276

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF +  + A L+K  GG+G     VR  G+ I G    S GVIP+++  N+TAV+V+Q
Sbjct: 277 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 336

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+  YL+ +H D+  FLDL+ N GD+R R HD+     +PDLFM+RV     W 
Sbjct: 337 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWN 396

Query: 501 LFSPDEVSD------------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           LF P EV                            F   YE   +      I     + A
Sbjct: 397 LFCPHEVKKVMGWKDDKGRPLGLEDFYDEAFGSGSFREKYEEASKHPILSRI----TVPA 452

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593
           + + ++++    ETG P++ ++D  N  +P +  G+V+SSNLCTEI  N S         
Sbjct: 453 IDIMKRLMKSQLETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEEL 512

Query: 594 --------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                           +  VCNL SI+L         D       +   VR+LDNVIDIN
Sbjct: 513 VTKDGQTRIVISKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDIN 567

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +A+ +N  +RA+GLG  G    L L  I + S EAV   D   E I++ A+ +S+
Sbjct: 568 NIEVLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSM 627

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+G Y+ F+GS W  G +             +      +   W EL + V+  G+R
Sbjct: 628 ELAKEKGRYAKFEGSDWATGHYFTSRGYTDGTREGKF----VTTSEWSELAEEVQQNGVR 683

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N+   AIAP  + + I G + SIDP Y+ L  +      + + N     +L ++ +W   
Sbjct: 684 NAWLFAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKIANP--APDLNEKTIW--- 736

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                    + TAF +D    I  AS RQ+ IDQ QS NLY+  
Sbjct: 737 ------------------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYVRP 772

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +    +   ++  AW  G+K+TYY+RSR+ T
Sbjct: 773 DIKATEFLELHIHAWKSGMKSTYYVRSRALT 803


>gi|319779631|ref|YP_004130544.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Taylorella equigenitalis MCE9]
 gi|317109655|gb|ADU92401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Taylorella equigenitalis MCE9]
          Length = 758

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 186/798 (23%), Positives = 321/798 (40%), Gaps = 71/798 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + ++  DG     + +++  +++ A +GL +VS+  V   +    YDG+   D++  +
Sbjct: 4   NTISVIKRDGRSEPLDLEKIHRVIDWAANGLDNVSTSQVELNSQIQFYDGIQTQDIQETI 63

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI  + P+Y  + AR  +  +R++                      ++    I+
Sbjct: 64  IKAAADLISTDTPDYQYLAARLAMINIRKKAYGDHVPPHL-----------YDHVSSLIQ 112

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           +GV  + +       +   + + L ++RD+ F Y+ +  +  +Y     ++G   E PQ 
Sbjct: 113 KGVYDKNIISDYSKDEFEEMNSYLVHDRDWDFSYVAVMQMQGKYLVQNRVSGEIYETPQF 172

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     +  + K   EFY+  S+F     TP +    T   Q SSC L    
Sbjct: 173 LYVLVAACLFAKYPKDVRLKYIREFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECG 232

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R  G+ I G   +  G IPF K        
Sbjct: 233 DSLDSINATSSAIVRYVSQRAGIGINAGRIRAEGSPIRGGEARHTGCIPFYKHFQTAVKC 292

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +  
Sbjct: 293 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNRLMYERLVKGQ 352

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +      FE  Y  YE+     +    R++ +  L+  ++    
Sbjct: 353 NITLFSPSDVPGLYDAFFEDQDTFEQLYTKYEQDPSIRK----RQVKSNDLFSMLMQERA 408

Query: 555 ETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  +I   D CN           +  SNLC EITL +   +      G I L      
Sbjct: 409 STGRIYIQNVDHCNTHGAFDPKKAPIRQSNLCLEITLPTKPLDDINDPKGEIALCTLSAF 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D+L       VR LD ++D   + I+ A+ S    R++G+G++ F   L   
Sbjct: 469 NLGAIDSLDELEHLADLVVRALDALLDYQDYPIKAAQISTMNRRSLGVGVINFAYYLAKN 528

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+      I  ++ E I ++ + AS+ LA+E G   +F  + + QGV PID+     
Sbjct: 529 GAKYSDGSGNAITHQTFEAIQYYLLKASMNLAKEFGPCPAFDETKYSQGVLPIDTYKKSV 588

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +           RL WD L+  +   G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 589 DD----FCKEPLRLDWDTLRVDIVKYGLRNSTLTALMPSETSSQISNATNGIEPPRGLIT 644

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                                     +LK  + T ++
Sbjct: 645 VKQSKDGILKQIVPDYK--------------------------------ELKDKYETLWQ 672

Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYY 902
           +  M   ++     QK++DQ+ S N   D            +L     +A+  G+KT YY
Sbjct: 673 LPNMDGYLQIVGIMQKFVDQSISANTNYDPKKFENGLVPMMQLIKDLLKAYKYGVKTLYY 732

Query: 903 LRSRSATSVEKSTLKGVD 920
             +R  +   + T K  D
Sbjct: 733 HNTRDGSDDIQDTSKEDD 750


>gi|15641269|ref|NP_230901.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121590732|ref|ZP_01678063.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 2740-80]
 gi|121729794|ref|ZP_01682230.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae V52]
 gi|147674951|ref|YP_001216821.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           O395]
 gi|153212312|ref|ZP_01948100.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 1587]
 gi|153823599|ref|ZP_01976266.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae B33]
 gi|153827302|ref|ZP_01979969.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-2]
 gi|153829751|ref|ZP_01982418.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 623-39]
 gi|227081428|ref|YP_002809979.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae M66-2]
 gi|229505157|ref|ZP_04394667.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae BX 330286]
 gi|229511171|ref|ZP_04400650.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae B33]
 gi|229515629|ref|ZP_04405088.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TMA 21]
 gi|229518290|ref|ZP_04407734.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC9]
 gi|229521369|ref|ZP_04410788.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TM 11079-80]
 gi|229525855|ref|ZP_04415260.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229529664|ref|ZP_04419054.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae 12129(1)]
 gi|229608177|ref|YP_002878825.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae
           MJ-1236]
 gi|254291707|ref|ZP_04962494.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae AM-19226]
 gi|254848380|ref|ZP_05237730.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|255745653|ref|ZP_05419601.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholera CIRS 101]
 gi|262159071|ref|ZP_06030183.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae INDRE 91/1]
 gi|262169429|ref|ZP_06037121.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC27]
 gi|262191405|ref|ZP_06049593.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae CT 5369-93]
 gi|297578848|ref|ZP_06940776.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385]
 gi|298498652|ref|ZP_07008459.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757]
 gi|9655739|gb|AAF94415.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547413|gb|EAX57524.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 2740-80]
 gi|121628469|gb|EAX60959.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae V52]
 gi|124116690|gb|EAY35510.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 1587]
 gi|126518878|gb|EAZ76101.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae B33]
 gi|146316834|gb|ABQ21373.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O395]
 gi|148874785|gb|EDL72920.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae 623-39]
 gi|149738793|gb|EDM53135.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-2]
 gi|150422391|gb|EDN14351.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae AM-19226]
 gi|227009316|gb|ACP05528.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae M66-2]
 gi|227013173|gb|ACP09383.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae O395]
 gi|229333438|gb|EEN98924.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae 12129(1)]
 gi|229339436|gb|EEO04453.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229341467|gb|EEO06470.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TM 11079-80]
 gi|229345005|gb|EEO09979.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC9]
 gi|229347398|gb|EEO12358.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae TMA 21]
 gi|229351136|gb|EEO16077.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae B33]
 gi|229357380|gb|EEO22297.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae BX 330286]
 gi|229370832|gb|ACQ61255.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae MJ-1236]
 gi|254844085|gb|EET22499.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|255736728|gb|EET92125.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholera CIRS 101]
 gi|262022242|gb|EEY40951.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae RC27]
 gi|262029256|gb|EEY47908.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae INDRE 91/1]
 gi|262032694|gb|EEY51244.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio cholerae CT 5369-93]
 gi|297536442|gb|EFH75275.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385]
 gi|297542985|gb|EFH79035.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757]
 gi|327483945|gb|AEA78352.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 193/798 (24%), Positives = 316/798 (39%), Gaps = 71/798 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++           A   +M           +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKM-----------VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +S         G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A++S+   R +G+G++ +   L    
Sbjct: 469 LGAIESLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY-- 902
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 903 LRSRSATSVEKSTLKGVD 920
            R  +      +T+K  +
Sbjct: 734 TRDGAKDEQTDATVKVQE 751


>gi|61806368|ref|YP_214727.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
 gi|61563912|gb|AAX46967.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
          Length = 768

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 205/830 (24%), Positives = 343/830 (41%), Gaps = 88/830 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++  DG+    +  R+  IVE AC GL  VS   V   +    +DG+  SD++  L+
Sbjct: 5   EINVIKRDGSKAPLDLNRVHHIVEHACRGLAGVSESQVEISSGLQFFDGIKTSDIQEILV 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR++V       P +         + E+    I+ 
Sbjct: 65  RSANDLISLEAPNYQYVAARLLLFSLRKQVYGGHPDHPTE---------FVEHIQSCIDR 115

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
            +    + +   + ++  L   + ++RD+ F Y G++ + D+Y       G   E PQ  
Sbjct: 116 NLYDGDILKKYTNDEITELGKYIDHDRDYLFTYAGIRQVVDKYLVQDRSTGEVFETPQFM 175

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A  L   +    + K   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 176 YMMIAATLFQDDDKFYRLKYVKKYYDAISKHKINIPTPIMGGVRTPLRQFASCVLVDVDD 235

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T    
Sbjct: 236 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFEATVRCC 295

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R  +++ 
Sbjct: 296 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSVQISGLFYQRFIEDST 355

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            TLFSP  V DL+D +G + F+  Y  YE      +    + + A  L   +L    ETG
Sbjct: 356 ITLFSPHNVPDLYDAFGTDAFDELYVKYENDNSIPK----KVVRAQELVLDLLKERAETG 411

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V  SNLC EITL ++         E A+C L +IN+   
Sbjct: 412 RLYIMNIDHCNSHSSFKDK--VSMSNLCQEITLPTTPLQHIDGSGEIALCILSAINVGKL 469

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D+L      AVR LD +ID   + +  A++S    R++G+G +G    L   
Sbjct: 470 TK-----LDELDDLCELAVRGLDALIDYQQYPVTAAEQSTKNRRSLGIGYIGLAHYLAKN 524

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   F  +SAS +LA E+G    F  + +  G+ PID+     
Sbjct: 525 GAKYDSQKAFDLVHKLTERFQFALLSASNQLAMEKGPCGYFGKTKYADGILPIDTYKNDV 584

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +       W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 585 DEI----IPNDLSCDWEFLRGRILEYGLRHSTLSAQMPSESSSIVSNATNGIEPPRDYLS 640

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    +              +  ++ D+  +DG                     
Sbjct: 641 IKKSKKGPLKQIVPSYSTL-----KNNYTLLWDMHNNDG--------------------- 674

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 I+  +  QK+ DQA S N          +E   +++   +   +  G KT+YY 
Sbjct: 675 -----YIKVTAIMQKFFDQAISGNWSYNPENYPNNEVPMQQMAMDWLNTYKYGWKTSYYQ 729

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +              D K +      P   T +L        +  CE C
Sbjct: 730 NT-------------YDAKKDGDDDLAPPVPTENLINDILTLEEENCESC 766


>gi|113200700|ref|YP_717863.1| ribonucleotide reductase subunit A [Synechococcus phage syn9]
 gi|76574599|gb|ABA47164.1| ribonucleotide reductase subunit A [Synechococcus phage syn9]
          Length = 767

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/831 (23%), Positives = 336/831 (40%), Gaps = 92/831 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++   GT  + +  ++  +VE AC GL  VS   V        +DG+   D++  LI
Sbjct: 6   TINVIKRSGTAETLDLDKIHTMVEHACKGLAGVSESQVEMNANLQFFDGVETKDIQEILI 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR+ V                     E+  + IE 
Sbjct: 66  RSANDLISLEAPNYQFVAARLLLFGLRKAVYNGHPDGHPPL---------KEHVEKCIER 116

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV  + +     D +   L + + ++RD+ F Y G++ + D+Y       G   E PQ  
Sbjct: 117 GVYDKTILSKYTDEEWDKLNSFMDHDRDYLFTYAGIRQVVDKYLVQDRSTGEIYETPQFM 176

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A  L   +    + +   ++YN +S       TP +    T   Q +SC L  V D
Sbjct: 177 YMMIAATLFQDDDPFYRIEYVKKYYNAISKHRLNIPTPVMAGVRTTLRQFASCVLVDVDD 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I        GV+PFLK    T    
Sbjct: 237 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRDGEVVHTGVVPFLKKFESTVRCC 296

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  +F +R   N  
Sbjct: 297 TQNGIRGGSATVHFPIWHTEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFIANKD 356

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G   F+  Y  YE+ +   +    ++I+A  L   +L    ETG
Sbjct: 357 ISLFSPHDVPGLYDAFGTPEFDDLYTQYEQDSSIPK----KRINAQELILDLLKERAETG 412

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 413 RLYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLQHIDGQGEIALCILSAINVGKL 470

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            + ++ D          AVR LD++ID   + I+ A+ S    R++G+G +G    L   
Sbjct: 471 KSLDEIDE-----LCELAVRGLDSLIDYQGYPIKAAEISTLNRRSLGIGFIGLAHYLAKH 525

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y SP+A ++  +  E   +  + AS  +A E+G    F  + +  G+ PID+     
Sbjct: 526 GAKYNSPKAYKLVHDLTERFQYALLIASNRMAMEKGPCGYFDKTKYSDGILPIDTYKKEI 585

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      ++      W+ L++R+K  G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 586 DDI----VSNDLSCDWEFLRERIKQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 641

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    +                                    + LK  +   ++
Sbjct: 642 IKKSKKGPLKQIVPQF--------------------------------NSLKANYDLLWD 669

Query: 851 I-DPMWLIESASRRQKWIDQAQSLNL-----YL--DEPSGKKLDFIYRQAWLMGLKTTYY 902
           +      I+  S  QK+ DQA S N          +E    ++       +  G KT+YY
Sbjct: 670 MPSNEGYIKIVSVMQKFFDQAISGNWAYNPENYPNNEVPVSEMAKDLLTTYKYGWKTSYY 729

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     ++T                      L      + + +C+ C
Sbjct: 730 ----------QNTYDAKKDAPIEESGDVDKLINEILQ-----SEEDDCDSC 765


>gi|326784254|ref|YP_004324792.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
 gi|310003485|gb|ADO97881.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
          Length = 765

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 204/830 (24%), Positives = 344/830 (41%), Gaps = 93/830 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L ++  DG     N  ++  +VE AC+GL  VS   V   +    +DG+  +D++  LI
Sbjct: 7   ELHVVKRDGEKEVMNLDKVHAMVEHACNGLAGVSESHVEMNSNLQFFDGIKTADIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR++V                     E+  + + +
Sbjct: 67  RSANDLISLEAPNYQFVAARLLLFGLRKQVYNGHPDGHPPLL---------EHVKKCVGK 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    +     D +   L + + ++RD+ F Y G++ + D+Y       G   E PQ  
Sbjct: 118 GVYDGGILSMYTDEEWEKLNSYIDHDRDYLFTYAGIRQVTDKYLVQDRSTGEIYETPQFM 177

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L   +    + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMVAATLFQNDDRFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T    
Sbjct: 238 TLDSIFSSDMAIGYYVSQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R   N+ 
Sbjct: 298 TQNGIRGGSATVHFPIWHAEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIANSV 357

Query: 499 WTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G  +F+  Y + E+     ++   + ++A  L+  +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDDFDELYCDAEQ----NDLIPRKTVNAQKLFLDLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------ETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 414 RMYIMNIDHCNTHSSFKDK--VNMSNLCQEITLPTDPIQHIDGGGEIALCILSAINVGKL 471

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 + D+L      AVR LD +ID   + +  AK+S    R++G+G +G    L   
Sbjct: 472 -----KNLDELDELCELAVRGLDALIDYQHYPVAAAKQSTINRRSLGIGYIGLAHYLAKH 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+     
Sbjct: 527 GANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKKEV 586

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +       W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 587 DEI----VPNDLSCDWEYLRGRITEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 642

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +     N LK     +  ++ D+  +DG                     
Sbjct: 643 VKKSKKGPLKQIVPSY-NSLK----NNYTLLWDMHNNDG--------------------- 676

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 I+  +  QK+ DQA S N          +E    ++       +  G KT+YY 
Sbjct: 677 -----YIKVTAVMQKFFDQAISGNWSYNPENYSDNEVPVSEMAKDLLTTYKYGWKTSYYQ 731

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  A                       + +   L      T + +C+ C
Sbjct: 732 NTYDA------------------KKDGDDENVDKLINELLTTEEEDCDSC 763


>gi|258624429|ref|ZP_05719376.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM603]
 gi|258583276|gb|EEW08078.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM603]
          Length = 760

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/790 (24%), Positives = 314/790 (39%), Gaps = 69/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                       +  + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FNHVSKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +S  E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A++S+   R +G+G++ +   L    
Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKS 914
           +R     E++
Sbjct: 734 TRDGAKDEQT 743


>gi|262165507|ref|ZP_06033244.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           VM223]
 gi|262025223|gb|EEY43891.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           VM223]
          Length = 760

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/790 (24%), Positives = 314/790 (39%), Gaps = 69/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                       +  + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FNHVSKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +S  E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A++S+   R +G+G++ +   L    
Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFASGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKS 914
           +R     E++
Sbjct: 734 TRDGAKDEQT 743


>gi|325294458|ref|YP_004280972.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064906|gb|ADY72913.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 765

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 220/794 (27%), Positives = 384/794 (48%), Gaps = 83/794 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++  +G+    N +++  ++  A  GL +V++  + S+   + YDG++  ++  +++
Sbjct: 3   KISVVKRNGSKEPLNIEKIRKVINWAAKGL-EVNTLKLESKLKLHFYDGITTREIHKSIV 61

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  L   +EP++  +  R  +  L +EV  ++ +   K  +      Y +     +E+
Sbjct: 62  NTALQLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYIGGGKEYLKVLKDLVEK 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           G+    + +S  + ++V   + LK E DF ++Y G  +L  RY        IE+PQ  +M
Sbjct: 120 GLYTNEIFKSYSEEEIVKAGDYLKLEYDFLYDYAGANLLAKRYLCIYEDYPIELPQEMYM 179

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            +A+ LA  E   ++     +FY+L++      +TP L N    +  LSSCF+T + D L
Sbjct: 180 SIALMLAKDESIDKRMTLVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDSL 239

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I     + A ++K +GG+G + + +R  G+ I    G S GV+P++++ ND AVAVNQ
Sbjct: 240 DSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWIRILNDIAVAVNQ 299

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            GKR GAV   L+ WH+D+ +FL+L+   GD RR+  D+     IPDLFM+RV ++  W 
Sbjct: 300 EGKRAGAVTVALDVWHLDIFDFLELKTENGDLRRKAFDIFPQVVIPDLFMERVKKDKDWL 359

Query: 501 LFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P EV        ++L+G+EFE AY   E+++ + ++K   K     L +++L     
Sbjct: 360 LVDPYEVEKKFGFRLYELWGEEFEKAYVQIEKESYKLKLKKKVKA--KELLKEILKTQVA 417

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597
           TG P+I FKD  N  +P +H G + + NLC E   N    ++                  
Sbjct: 418 TGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKSFKTTLEKGKIVSKVEKPG 477

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
               CNL SINL         +  +L   +RTAVR+LDN ID+    I ++K  N  +R 
Sbjct: 478 LVHTCNLLSINLANI-----ENDKELEDVVRTAVRILDNTIDLTTSPILESKLHNDRYRT 532

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G +G    L    IPY   +++ + DE  E I+++ I  S+ LA+ERG + +F+GS 
Sbjct: 533 IGIGTLGLADYLAKREIPYG-KQSLNLIDELYEKIAYYGIDESINLAKERGKFQAFEGSD 591

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W +G+       ++ + R+ L      +  W  + +++K  G+RN    AIAP  +   +
Sbjct: 592 WSRGI-------IIGKDREYLLKKTHLKEKWLTVLEKLKKYGIRNGQLFAIAPNTSSGLL 644

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  + P +   Y+  N      +   +L     ++  W                   
Sbjct: 645 QGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KKKFW------------------- 680

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYRQ 891
                    +  +  ++   +I+  S  Q+W+D   S+    NL L     K +      
Sbjct: 681 --------FYRESKFLNQKEVIDVISTIQRWVDSGISMELLFNLNL-GVRAKDIFETVIY 731

Query: 892 AWLMGLKTTYYLRS 905
           AW  G+KT YY+R+
Sbjct: 732 AWEKGIKTIYYVRT 745


>gi|258620210|ref|ZP_05715249.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM573]
 gi|262171720|ref|ZP_06039398.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           MB-451]
 gi|258587568|gb|EEW12278.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus
           VM573]
 gi|261892796|gb|EEY38782.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus
           MB-451]
          Length = 760

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/790 (24%), Positives = 314/790 (39%), Gaps = 69/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                       +  + +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FNHVSKMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +S  E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A++S+   R +G+G++ +   L    
Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKS 914
           +R     E++
Sbjct: 734 TRDGAKDEQT 743


>gi|37679428|ref|NP_934037.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           vulnificus YJ016]
 gi|37198172|dbj|BAC94008.1| ribonucleotide reductase, alpha subunit [Vibrio vulnificus YJ016]
          Length = 767

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 195/798 (24%), Positives = 318/798 (39%), Gaps = 69/798 (8%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
              ++ +  +L +   DG   + + ++L  ++  A  GL +VS   V    +   YDG++
Sbjct: 2   LGKESRMNQQLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGIT 61

Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
            SD+   +I S+  LI +E P+Y  + AR  +  LR++              +E   LY 
Sbjct: 62  TSDIHETIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY- 110

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHING 311
           ++  R ++ G   + + E     +L  L   L ++RD  F Y  ++ L  +YF    ++G
Sbjct: 111 DHVARLVDMGKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSG 170

Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              E  Q  ++ VA  L     +  +      FY+  S+F     TP +    T   Q S
Sbjct: 171 QIYESAQFLYILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFS 230

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +R LG+ I G      G IPF K
Sbjct: 231 SCVLIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYK 290

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                    +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L 
Sbjct: 291 YFQTAVKCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLM 350

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +R+ +    TLFSP +V  L+D +     EFE  Y  YE             + A+ ++
Sbjct: 351 YQRLVEGGNITLFSPSDVPGLYDAFFENQAEFERLYVKYE----NDPSIKKETVKALEMF 406

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             ++     TG  +I   D CN  SP    V  V  SNLC EI L +        + G I
Sbjct: 407 TLLMQERASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEI 466

Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            L              D L       VR LD ++D   + +  A KS    R +G+G++ 
Sbjct: 467 ALCTLSAFNLGAINTLDDLKELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVIN 526

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G+ P
Sbjct: 527 YAYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKGLMP 586

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +    L  +      WD L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 587 IDTYKKDID----LICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNATNGI 642

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V    +         +  ++ ++  +DG +           
Sbjct: 643 EPPRGYVSVKASKDGILKQVVPDFIEL-----KNNYELLWNIGSNDGYLH---------- 687

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLM 895
                                QK++DQA S N   D           KKL      A+  
Sbjct: 688 ----------------LVGIMQKFVDQAISANTNYDPARYESGKVPMKKLLQDLLTAYKF 731

Query: 896 GLKTTYYLRSRSATSVEK 913
           G+KT YY  +R     E+
Sbjct: 732 GVKTLYYHNTRDGAKDEQ 749


>gi|27366310|ref|NP_761838.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           vulnificus CMCP6]
 gi|320156820|ref|YP_004189199.1| ribonucleotide reductase of class Ia (aerobic), subunit alpha
           [Vibrio vulnificus MO6-24/O]
 gi|27362511|gb|AAO11365.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           vulnificus CMCP6]
 gi|319932132|gb|ADV86996.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 760

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 195/789 (24%), Positives = 315/789 (39%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + ++L  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQAEFERLYVKYE----NDPSIKKETVKALEMFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAINTLDDLKELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V    +         +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFIEL-----KNNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D           KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPARYESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R     E+
Sbjct: 734 TRDGAKDEQ 742


>gi|261380738|ref|ZP_05985311.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           subflava NJ9703]
 gi|284796456|gb|EFC51803.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           subflava NJ9703]
          Length = 759

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 193/786 (24%), Positives = 318/786 (40%), Gaps = 71/786 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            A  +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+  
Sbjct: 3   AATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+                       ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317
            E G   R +       +   L   + + RD  F Y  ++ L  +Y     +     E P
Sbjct: 112 TEAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
              TG  +I   D CN  SP   HV  VH SNLC EI L +   +      G I L    
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPHVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   + D+L       VR LD ++D   + +  A+ +    R +G+G++ +   L 
Sbjct: 468 AFNLGALNNLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYLA 527

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+   
Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 588 DLDAVCSEPL----HYDWESLRAGIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK++  G    V                                    + LK  + T 
Sbjct: 644 VSVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671

Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTT 900
           +++      ++     QK++DQ+ S N  Y          S K++      A+  G+KT 
Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTL 731

Query: 901 YYLRSR 906
           YY  +R
Sbjct: 732 YYHNTR 737


>gi|89092732|ref|ZP_01165685.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum
           sp. MED92]
 gi|89083244|gb|EAR62463.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum
           sp. MED92]
          Length = 754

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/801 (24%), Positives = 317/801 (39%), Gaps = 71/801 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     + +++  +V  A  GL  VS   V  + +   ++G+   D+   LI
Sbjct: 4   DLMVTKRDGRQEKLDLEKIHKVVIWAADGLNAVSPSEVELKAHLQFFEGMKTFDIHETLI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR+                       ++    +E 
Sbjct: 64  KSAADLISEDAPDYQYLAARLAIFHLRKRAFGQFEPPRL-----------FDHVSAQVEA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E   + +   L   L ++RD  F Y  ++ L  +Y     + G   E PQ  
Sbjct: 113 GRYDKHLIEDYSEAEWETLNGYLDHKRDMNFSYSAVKQLEGKYLVQNRVTGEVYESPQIL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L     +  +      FY+  S F     TP +    T   Q SSC L    D
Sbjct: 173 YMLVAACLFADYPKETRLDYVKRFYDATSLFKLSLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSASIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP EV  L+D +     EFE  Y  YE   +  +    + I AV L+  +     +
Sbjct: 353 ITLFSPHEVPGLYDAFFADQDEFERLYVQYENDPNIRK----QTIKAVELFGILAAERAQ 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPTVAPVKQSNLCLEIALPTKPLQHVNDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D D+L +     VR LDN++D   + I  A  S    R +G+G+  F   L    
Sbjct: 469 LGALEDLDELDNLADLIVRALDNLLDYQDYPIPAAHTSTMNRRPLGVGVTNFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E + ++ + AS  LA+ERG    F  +++ +G+ PID+     +
Sbjct: 529 VKYSDGSANGLVHKTFEAVQYYLLKASNALAKERGKCPKFDETVYSKGLLPIDTYKREVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              E  +       W+ L++ +K  G+RNS   A+ P  T + I   +  I+P    + V
Sbjct: 589 EFCEEPL----HYFWETLREDIKEFGLRNSTLTALMPCETSSQITNSTNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       L+++      ++ D+  + G +                    
Sbjct: 645 KASKDGIMKQVVPGYTE-LREQ----YELLWDIPNNTGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY-- 902
                       QK++DQ+ S N          D+   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQSISANTNYDPSLFPNDKVPMKQLLQDLLTAYKYGVKTLYYHN 733

Query: 903 LRSRSATSVEKSTLKGVDGKL 923
            R  ++   +    +G   KL
Sbjct: 734 TRDGASDQADDGGCEGGACKL 754


>gi|332974188|gb|EGK11122.1| ribonucleotide-diphosphate reductase alpha subunit [Psychrobacter
           sp. 1501(2011)]
          Length = 758

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 183/795 (23%), Positives = 320/795 (40%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             LK+M  DG L   +  ++  ++  A  GL +VS   V  +++   YDG+   D+   +
Sbjct: 5   DNLKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI ++ P+Y  + AR  +  LR+                       ++  +   
Sbjct: 65  IKAAADLISEDTPDYQYLAARLAIFHLRKIAYNQFEPPHL-----------FDHVTKLTA 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G     + +     +   L   + + RD    Y   + +  +Y     +  +  E PQ 
Sbjct: 114 AGKYDEHILQDYSREEFDELNEYIDHWRDMTLAYAAAEQMAGKYLVQDRVTKTVYESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            +M V M L     ++E+      FY+  S F     TP +    T   Q SSC L    
Sbjct: 174 LYMLVGMCLFASYDKSERLHYVKRFYDASSQFKISLPTPIMAGVRTPSRQFSSCVLIECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G   +  G IPF K+       
Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRTLYTRLIKGQ 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              LFSP +V  L++ +     +FE  Y  YE+  +  +    R + A  L+  ++    
Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEELYTEYEQDENIRK----RHVPAADLFSLLMQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP       +  SNLC EI L +   +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCMEIALPTKPLDNINDEKGEIALCTLSAV 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N  +   L          VR LD ++D   + ++ A+  +   R +G+G++ +   L   
Sbjct: 470 NLGEVQSLDDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A+ +  ++ E + ++ + AS +LA+E+GA  +F  + + QG+ PID+     
Sbjct: 530 GVKYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDTYKADL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       N   +L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DKI----CNEPLQLDWEALRSEIKEHGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK++  G    V   ++N        +  ++  +  +DG                     
Sbjct: 646 VKASKDGILKQVVPDILNL-----KDNYELLWQMPNNDG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++  +  QK+IDQ+ S N          +    K L      A+ +G+KT YY 
Sbjct: 680 -----YLKLVAVMQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R   +  ++ +  
Sbjct: 735 NTRDGANDAQADIDD 749



 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
           +  ++V+KR+G +   D  KI + I     A EG       +V+
Sbjct: 3  HMDNLKVMKRDGRLEPIDLDKIHKVIT---WAAEGLDNVSVSQVE 44


>gi|261377766|ref|ZP_05982339.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           cinerea ATCC 14685]
 gi|269146055|gb|EEZ72473.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           cinerea ATCC 14685]
          Length = 759

 Score =  457 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/783 (24%), Positives = 319/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEPIDLDKIHRVVTWAADGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISQDTPDYQYLAARLAIFHLRKIAYGDFEPPHL-----------YDHVKKLTDS 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + + RD AF Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHGRDMAFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNNLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+     +
Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|254230293|ref|ZP_04923682.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp.
           Ex25]
 gi|262393880|ref|YP_003285734.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha
           [Vibrio sp. Ex25]
 gi|151937190|gb|EDN56059.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp.
           Ex25]
 gi|262337474|gb|ACY51269.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio sp. Ex25]
          Length = 760

 Score =  457 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/789 (24%), Positives = 311/789 (39%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVSRLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   + ++RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ F   L    
Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + ++ + ASVELA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVELAKEQGKCPSFDETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L+K +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTEL-----KDNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R     E+
Sbjct: 734 TRDGAKDEQ 742


>gi|260768283|ref|ZP_05877217.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio
           furnissii CIP 102972]
 gi|260616313|gb|EEX41498.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio
           furnissii CIP 102972]
 gi|315179990|gb|ADT86904.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           furnissii NCTC 11218]
          Length = 760

 Score =  457 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/797 (24%), Positives = 314/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++    +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLL-----------DHVSAMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +   L   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREEFELLNGFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKATRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE           R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKRTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLVNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A+KS    R +G+G++ +   L    
Sbjct: 469 LGAIEKLDDFEELAELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYAYYLARHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + ++ + ASV LA+E+G   +F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVNLAKEQGKCPAFDETNYAKGLLPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      W+ L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LLCDEPLHYDWNALREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A   +K  ++  D
Sbjct: 734 TRDGAKDDQKDAVQPAD 750


>gi|319638205|ref|ZP_07992968.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102]
 gi|317400478|gb|EFV81136.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102]
          Length = 759

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/786 (24%), Positives = 317/786 (40%), Gaps = 71/786 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            A  +K+   DG L   +  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+  
Sbjct: 3   AATNIKVTKRDGRLEDIDLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+                       ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317
            + G   R +       +   L   + + RD  F Y  ++ L  +Y     +     E P
Sbjct: 112 TDAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLPATELFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
              TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L    
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   + D+L       VR LD ++D   + +  A+ +    R +G+G++ +   L 
Sbjct: 468 AFNLGALNNLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYLA 527

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+   
Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +       N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 588 DLDAV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK++  G    V                                    + LK  + T 
Sbjct: 644 VSVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671

Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTT 900
           +++      ++     QK++DQ+ S N  Y          S K++      A+  G+KT 
Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTL 731

Query: 901 YYLRSR 906
           YY  +R
Sbjct: 732 YYHNTR 737


>gi|225075857|ref|ZP_03719056.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens
           NRL30031/H210]
 gi|224952803|gb|EEG34012.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens
           NRL30031/H210]
          Length = 759

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 194/799 (24%), Positives = 321/799 (40%), Gaps = 71/799 (8%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            A  +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+  
Sbjct: 3   AATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+                       ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317
            E G   R +       +   L   + + RD  F Y  ++ L  +Y     +     E P
Sbjct: 112 TEAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R + A  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
              TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L    
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVASVHQSNLCMEIALPTKPLDNINDAEGEIALCTLS 467

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   D D+L       VR LD ++D   + +  A+ +    R +G+G++ +   L 
Sbjct: 468 AFNLGALNDLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYLA 527

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+   
Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +       N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 588 DLDAV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK++  G    V                                    + LK  + T 
Sbjct: 644 VSVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671

Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTT 900
           +++      ++     QK++DQ+ S N  Y          S K++      A+  G+KT 
Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTL 731

Query: 901 YYLRSRSATSVEKSTLKGV 919
           YY  +R      ++ ++  
Sbjct: 732 YYHNTRDGADDTQADIQDD 750


>gi|325578587|ref|ZP_08148687.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159823|gb|EGC71953.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 756

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 198/796 (24%), Positives = 325/796 (40%), Gaps = 71/796 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGTL   N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  G
Sbjct: 65  AAADLISKDTPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L       +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDPALLADYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + A  
Sbjct: 294 QGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGADI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L++ +     +FE  Y  YE+  +  +    R + AV L+  ++     T
Sbjct: 354 TLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP   +   V  SNLC EI L +   +      G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +   L    +
Sbjct: 470 GKLDDLDELENLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVINYAYYLAKNGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILPIDTYKNDIDS 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                        W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P   ++ +K
Sbjct: 590 ----LTQEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     N        +  ++ D+  +DG +                     
Sbjct: 646 ASKDGILKQVVPDYENL-----SDNYELLWDIPSNDGYLH-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   K L      A+  GLKT YY  +
Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNT 734

Query: 906 RSATSVEKSTLKGVDG 921
           R     E S     DG
Sbjct: 735 RD--GAEDSQEDLDDG 748


>gi|117620066|ref|YP_856856.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561473|gb|ABK38421.1| ribonucleoside-diphosphate reductase, alpha subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 767

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/794 (24%), Positives = 321/794 (40%), Gaps = 79/794 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I 
Sbjct: 15  LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIK 74

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E+ P+Y  + AR  +  LR++                      ++  + ++ G
Sbjct: 75  AAADLISEQSPDYQYMAARLAIFHLRKKAYGQFEPPHL-----------YQHVAKLVDMG 123

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + L E     +   L   L + RD  F Y  ++ L  +Y     + G   E PQ  +
Sbjct: 124 KYDKHLLEDYSQAEFEELNQHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 183

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 184 ILVAACLFSKYPKDTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 243

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G      G IPF K         +
Sbjct: 244 LDSINATASAIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 303

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L  +R+ +    
Sbjct: 304 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 363

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +   L+D +     +FE  Y  YE+     +    + + AV L+  M+     T
Sbjct: 364 TLFSPSDAPGLYDAFFADQDKFEALYVKYEQDPSIRK----KTLKAVDLFSLMMQERAGT 419

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP       V  SNLC EI L +           E A+C L + NL
Sbjct: 420 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNL 479

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         + L      AVR LD ++D   + ++ A K +   R +G+G++ +   L
Sbjct: 480 GAIEK-----LEDLEEMADLAVRALDALLDYQDYPLKAAMKGSMNRRTLGIGVINYAYYL 534

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+    + +   + E I ++ + ASV+LA+E G   +F  + + QG+ PID+  
Sbjct: 535 AKNGARYSDGSGLALTHRTFEAIQYYLLKASVQLAREFGPCPAFNETTYAQGILPIDTYK 594

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N    L W+ L++ ++T+G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 595 KDLDN----LCNEPLHLDWEALREEIRTVGLRNSTLTALMPSETSSQISNATNGIEPPRG 650

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V       LK +      ++      DG +                
Sbjct: 651 LVSVKASKDGILKQVVPEYDR-LKDQ----YELLWKQPSVDGYLQ--------------- 690

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
                           QK++DQA S N          ++   K+L      A+  GLKT 
Sbjct: 691 -----------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTL 739

Query: 901 YYLRSRSATSVEKS 914
           YY  +R      ++
Sbjct: 740 YYHNTRDGADDAQT 753


>gi|294669613|ref|ZP_06734680.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308526|gb|EFE49769.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 759

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/786 (24%), Positives = 321/786 (40%), Gaps = 71/786 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            A  +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   AAASIKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+                       ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FDHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317
            + G   R + E     +   L   + + RD  F Y  ++ L  +Y     +     E P
Sbjct: 112 TDAGKYDRHIIEDYSQEEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
              TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L    
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                     D+L       VR LD ++D   + +E A+ +    R +G+G++ +   L 
Sbjct: 468 AFNLGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLA 527

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+   
Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 588 DLDAVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK++  G    V                                    + LK  + T 
Sbjct: 644 VTVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671

Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
           +++      ++     QK++DQ+ S N          ++ S K++      A+  G+KT 
Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPSKFEGNKVSMKQMLKDLLTAYKYGVKTL 731

Query: 901 YYLRSR 906
           YY  +R
Sbjct: 732 YYHNTR 737


>gi|261400677|ref|ZP_05986802.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209587|gb|EEZ76042.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica ATCC 23970]
          Length = 759

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/796 (24%), Positives = 326/796 (40%), Gaps = 71/796 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L + + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNSYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNNLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + ++ + ASV LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKGV 919
            +R      ++ ++  
Sbjct: 735 NTRDGADDTQADIQDD 750


>gi|148653375|ref|YP_001280468.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           sp. PRwf-1]
 gi|148572459|gb|ABQ94518.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter sp. PRwf-1]
          Length = 758

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 186/795 (23%), Positives = 327/795 (41%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +K+M  DG L   +  ++  ++  A  GL +VS   V  +++   YDG+   D+   +
Sbjct: 5   DNIKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI ++ P+Y  + AR  +  LR+                       ++  +  E
Sbjct: 65  IKAAADLISEDTPDYQYLAARLAIFHLRKIAYNQFEPPHL-----------FDHVTKLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + + +     +   L + + + RD    Y   + +  +Y     +  +  E PQ 
Sbjct: 114 AGKYDQHILQDYSREEFDELNDYIDHWRDMNLAYAAAEQMAGKYLVQDRVTKTVYESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V M L     ++E+      FY+  S+F     TP +    T   Q SSC L    
Sbjct: 174 LYVLVGMCLFASYDKSERMHYVKRFYDAASTFKISLPTPIMSGVRTPSRQFSSCVLIECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G   +  G IPF K+       
Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRPLYTRLIKGE 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
              LFSP +V  L++ +     +FE  Y  YE+  +  +    R + A  L+  ++    
Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEALYTKYEKDDNIRK----RHVPAADLFSLLMQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L +   +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLSAV 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N  + D L          VR LD ++D   + ++ A+  +   R +G+G++ +   L   
Sbjct: 470 NLGEVDSLEDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+   A+ +  ++ E + ++ + AS +LA+E+GA  +F  + + QG+ PID+     
Sbjct: 530 GTRYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDTYKADL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       N   RL W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DKV----CNEPLRLDWEALRQEIKTHGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK++  G    V   ++N        +  ++  +  +DG                     
Sbjct: 646 VKASKDGILKQVVPDILNLKG-----NYELLWQMPNNDG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++  +  QK+IDQ+ S N          +    K L      A+ +G+KT YY 
Sbjct: 680 -----YLKLVAVMQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R   +  ++ +  
Sbjct: 735 NTRDGANDAQADIDD 749



 Score = 38.7 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
           +  ++V+KR+G +   D  KI + I     A EG       +V+
Sbjct: 3  HMDNIKVMKRDGRLEPIDLDKIHKVIT---WAAEGLDNVSVSQVE 44


>gi|241760524|ref|ZP_04758617.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           flavescens SK114]
 gi|241319028|gb|EER55530.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           flavescens SK114]
          Length = 759

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/786 (24%), Positives = 320/786 (40%), Gaps = 71/786 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            A  +K+   DG L   N  ++  +V  A  GLQ+VS   V  +++   Y+G+   D+  
Sbjct: 3   AATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI ++ P+Y  + AR  +  LR+                       ++  + 
Sbjct: 63  TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317
            E G   R +       +   L   + + RD  F Y  ++ L  +Y     +     E P
Sbjct: 112 TEAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLG+ I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++  
Sbjct: 352 GGNITLFSPNEVPSLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
              TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L    
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                     D+L       VR LD ++D   + +E A+ +    R +G+G++ +   L 
Sbjct: 468 AFNLGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLA 527

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+   
Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 588 DLDAVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK++  G    V                                    + LK ++ T 
Sbjct: 644 VTVKASKDGILKQVVPEF--------------------------------ETLKDVYETL 671

Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
           +++      ++     QK++DQA S N          ++ S K++      A+  G+KT 
Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTL 731

Query: 901 YYLRSR 906
           YY  +R
Sbjct: 732 YYHNTR 737


>gi|91775576|ref|YP_545332.1| ribonucleotide-diphosphate reductase subunit alpha [Methylobacillus
           flagellatus KT]
 gi|91709563|gb|ABE49491.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Methylobacillus flagellatus KT]
          Length = 774

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 189/794 (23%), Positives = 315/794 (39%), Gaps = 69/794 (8%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           +        +K    DG     N  ++  +++ A  GL +VS   V  +++   YDG+  
Sbjct: 13  EPKMTQYESMKATKRDGRQEPINLDKIHRVIDWAAQGLDNVSVSQVELKSHIQFYDGIRT 72

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +   +I S+  LI +E P+Y  + AR  +  LR+                       +
Sbjct: 73  DVIHETIIKSAADLISEETPDYQYLAARLSIFHLRKIAYGQFEPPHL-----------FD 121

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312
           +  +  E G   + + +     +   L + L + RD  F Y  ++ L  +Y     +   
Sbjct: 122 HVTKLTEMGKYDKHILQDYSREEFDALNDHLDHWRDMNFSYAAVKQLEGKYLVQNRVTKK 181

Query: 313 RIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E PQ  +M VAM L  +     + +    FY+ +S+F     TP +    T   Q SS
Sbjct: 182 IYESPQFLYMLVAMCLFARYEGKTRLEYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 241

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G   +  G +PF K+
Sbjct: 242 CVLIECDDSLDSINATTSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAQHTGCLPFYKL 301

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  
Sbjct: 302 FQAAVKSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQINRLLY 361

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    R + AV L+ 
Sbjct: 362 QRLIKGGNITLFSPHDVPGLYDAFFADQDEFERLYTQYEANDSLRK----RIVPAVDLFS 417

Query: 548 KMLTMLFETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            ++     TG  +I   D CN        +  V  SNLC EI L +          G I 
Sbjct: 418 LLMQERAGTGRIYIQNVDHCNTHSPFNPRLAPVRQSNLCMEIALPTRPLNDINDENGEIA 477

Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           L              D+L       VR LD ++D   + ++ A  +    R++G+G++ +
Sbjct: 478 LCTLSAFNLGALESLDELEGLADLVVRALDALLDYQDYPVKAAFNATQKRRSLGVGVINY 537

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y    A+ +   + E I ++ + ASV+LA+E G   +F  + + QG+ PI
Sbjct: 538 AYYLAKNGTGYTDDAALGLTHRTFEAIQYYLLKASVQLAREFGPCGAFNETTYSQGILPI 597

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +           +L W++L+K +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 598 DTYKKDLDAV----CQEALQLDWEQLRKDIVAHGLRNSTLTALMPSETSSQIANATNGIE 653

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK +  G    V   +             ++  L  +DG              
Sbjct: 654 PPRGLVSVKQSKDGILRQVVPEIERL-----RNQYQLLWSLPNNDG-------------- 694

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
                        ++     QK++DQ+ S N   D       +   K+L     QA+ +G
Sbjct: 695 ------------YLKLVGIMQKFVDQSISSNTNYDPKRFEGGKVPMKQLLKDLLQAYKLG 742

Query: 897 LKTTYYLRSRSATS 910
           +KT YY  +R   S
Sbjct: 743 IKTLYYHNTRDGAS 756


>gi|182419342|ref|ZP_02950594.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum 5521]
 gi|237666539|ref|ZP_04526524.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376673|gb|EDT74245.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum 5521]
 gi|237657738|gb|EEP55293.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 743

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 239/771 (30%), Positives = 372/771 (48%), Gaps = 91/771 (11%)

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTT 235
           S   +L      + DG+SE  +  +LI  +  L    EPN+    ++    +L  EV   
Sbjct: 23  SENKLLEALNLIIRDGMSEKHIRKSLIQVALELTTDMEPNWQFAASKIYTYELYDEVR-- 80

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
             +     +  ++   Y ++  +  + G+  + + ++    D++ L   +K ERDF F Y
Sbjct: 81  --ENRGLNSSEDLYKNYYDFISQLTDRGLYGKYILDNYTKEDILELEKTIKPERDFLFNY 138

Query: 296 LGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352
            G+ +L  RY +   N + +E+PQ  FM +AM LA+ E +  +   A  FY++LSS    
Sbjct: 139 SGINLLSKRYLVQDYNRNPVELPQQMFMGIAMHLAIPEDKSKRVYWAKRFYDVLSSLKAT 198

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TPT+ N+     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     VR LG+
Sbjct: 199 MATPTMSNARKPFYQLSSCFIDTVEDSLEGIYKSLDNFAQVSKFGGGMGIYMGKVRALGS 258

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G S G+IP++K+ NDTAVAV+Q G R G+V  +L+ WH D+ EFL +R N GDD
Sbjct: 259 SIRGFKGASGGIIPWVKLFNDTAVAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDD 318

Query: 473 RRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENY 525
           R++ HD+      PDLF K    N  + W +  P E+       L D YG E+E  Y   
Sbjct: 319 RKKAHDVFPGLCYPDLFWKLAENNIDSDWYMMCPHEIKEIKGYSLEDFYGDEWEEKYYEC 378

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                  E    R +S   + R ++    ETG P+  ++D  N  +P +H G+++SSNLC
Sbjct: 379 V----NDERIEKRVMSVKDIVRLIIKSAAETGAPFAFYRDTVNKMNPNKHNGIIYSSNLC 434

Query: 586 TEITLNSSSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLA 622
           TEI  N S  E                         VCNL S+ L      +    +++ 
Sbjct: 435 TEIMQNMSPMEINKSEIINEDGSCIVTQNIIPGDFVVCNLSSVVLGNIDVCS---EEEVD 491

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             + T +R +DNVID+N +++  A+ +N  +RAIGLG  G+   L    I +   +  + 
Sbjct: 492 YVVETQIRAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNRIHWTEEKHKDF 551

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           ADE  E I+++A+ AS+++A+E+GAY+ FK S WD G              D   +    
Sbjct: 552 ADEVYERINYYAVKASMKIAKEKGAYNLFKESDWDNG--------------DYFELRGYK 597

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+K +K  GMRN   +A+AP  + A I G S+ IDP     Y++          
Sbjct: 598 DEKWCALRKEIKENGMRNGYLLAVAPNGSTATIAGTSEGIDPVMARFYLEEKKGSIIPKT 657

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              L                                DD    +  A+ ID  W ++    
Sbjct: 658 APNL-------------------------------NDDNYWYYNPAYNIDQAWSVQMNGI 686

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           RQ+ IDQ QS NLY+ +  + +++  +Y +A   G+K+ YY+RS+S    E
Sbjct: 687 RQRHIDQGQSFNLYITNNYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTE 737


>gi|329119973|ref|ZP_08248645.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463886|gb|EGF10200.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 759

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/786 (24%), Positives = 321/786 (40%), Gaps = 71/786 (9%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            A  LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+  
Sbjct: 3   AAENLKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62

Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +I ++  LI +E P+Y  + AR  +  LR+                       ++  + 
Sbjct: 63  TIIKAAADLISQETPDYQYLAARLAIFHLRKIAYGQFEPPHL-----------FDHVKKL 111

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317
            E G   R + E     +   L   + + RD  F Y  ++ L  +Y     +     E P
Sbjct: 112 TEAGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 172 QFLYVLVAMCLFSKYPKDTRLNYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +RGLGA I G   +  G IPF K+     
Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGAEIRGGEAQHTGCIPFFKMFQAAV 291

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +
Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++  
Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
              TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L    
Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                     D+L       VR LD ++D   + +E A+ +    R +G+G++ +   L 
Sbjct: 468 AFNLGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLA 527

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+   
Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 588 DLDAVCSEPL----LCDWESLRADIVEHGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + VK++  G    V                                    + LK  + T 
Sbjct: 644 VTVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671

Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
           +++      ++     QK++DQA S N          ++ S K++      A+  G+KT 
Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTL 731

Query: 901 YYLRSR 906
           YY  +R
Sbjct: 732 YYHNTR 737


>gi|298368553|ref|ZP_06979871.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282556|gb|EFI24043.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 759

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + + RD  F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ +    R +G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+     +
Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTIYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPSKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|89097913|ref|ZP_01170800.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
 gi|89087415|gb|EAR66529.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
          Length = 769

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 250/793 (31%), Positives = 382/793 (48%), Gaps = 87/793 (10%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES--DLETALIFS 205
           +   GT ++ +S +  + +    S    +  + +       + D  + S  +L   LI  
Sbjct: 20  INPGGTTMNISSAK-PLPLASIDSDFPHLDFQPLYKRAT-QLQDNHTPSNDELLNQLILD 77

Query: 206 SRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S ++I + EP++  V AR  L  L  +       + +++T  E             + GV
Sbjct: 78  SLSMISEAEPDWTYVAARLYLSSLYEKA-----AEHRRSTAGESYGPLYGLITDLTDAGV 132

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMR 323
            + +L ES    ++  +   +  E+D  F Y+ +++L DRY       R  E+PQ  FM 
Sbjct: 133 YSPVLLESYTKEEIDIIGTYIDPEKDRLFTYIAVKMLADRYLSRDKKKRLFELPQERFMI 192

Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           ++M L   E    +     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L 
Sbjct: 193 ISMTLNRSEPKERRLSLIKESYWALSNLYMTAATPTLSNAGKNWGQLSSCFIDTVDDSLQ 252

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+ +  + A L+K  GG+G     +R  G+ I G  G S GV+P++K  N+TAV+V+Q 
Sbjct: 253 GIYDSNTDIANLSKNGGGIGVYLGKIRSRGSDIKGFKGASSGVLPWMKQLNNTAVSVDQL 312

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+RKGAV  YL+ WH D+  FLD + N GD+R RTHD+ T   +PDLFM+ V     W L
Sbjct: 313 GQRKGAVSVYLDIWHKDIFSFLDSKLNNGDERYRTHDLFTGVCLPDLFMETVEARGDWHL 372

Query: 502 FSPDEVSDLHDLYGKEFEI-------AYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           F P EV  +     ++F             YE       +   + + A+ + ++++    
Sbjct: 373 FDPHEVRSVMGFSLEDFYDEKPGAGSFRVKYEECVANPRLSKQK-VPAIDIMKRIMISQL 431

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SE 595
           ETG P++ ++D  N ++P +H+G+++ +NLCTEI  N S                     
Sbjct: 432 ETGTPFMFYRDEVNRKNPNRHLGMIYCTNLCTEIVQNQSATITKDQREEDGRIIIEKIPG 491

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL SINL    A++      L   I   VR+LDNVID+N   + +   +N  +RA
Sbjct: 492 DFVVCNLSSINLARAAADHV-----LERLIPIQVRMLDNVIDLNTIPVLQGVATNRKYRA 546

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L L  + + + EAV +ADE  E I+F  I AS+ LA E+G+Y  FKGS 
Sbjct: 547 IGLGTFGWHHLLALKKLRWENEEAVRLADELYEKIAFLTIKASMNLAMEKGSYPGFKGSD 606

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +           R   +++      WD L + V+  G+RN   MA+AP A+ + I
Sbjct: 607 WHSGEYFT--------SRGYSSLDSVH--DWDSLMQAVRKNGIRNGYLMAVAPNASTSII 656

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S SIDP ++  Y +        V       +L +   W                   
Sbjct: 657 AGSSPSIDPIFRKFYSEEKKDYKIPVTAP----DLNEHTTW------------------- 693

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                    + +A+ ID  W I   S+RQK IDQA S NLY+ +    K+L  ++  AW 
Sbjct: 694 --------YYKSAYVIDQHWSILQNSKRQKHIDQAISFNLYVQNNIKAKELLDLHLSAWK 745

Query: 895 MGLKTTYYLRSRS 907
            GLKTTYY+RS S
Sbjct: 746 NGLKTTYYVRSTS 758


>gi|145298926|ref|YP_001141767.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851698|gb|ABO90019.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 755

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 198/786 (25%), Positives = 319/786 (40%), Gaps = 79/786 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I 
Sbjct: 3   LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIK 62

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E+ P+Y  + AR  +  LR++                      ++  R ++ G
Sbjct: 63  ATADLISEQSPDYQYMAARLAIFHLRKKAYGQFEPPHL-----------YQHVARLVDMG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + L       +   L   L + RD  F Y  ++ L  +Y     + G   E PQ  +
Sbjct: 112 KYDKHLLTDYTQAEFEELNEHLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 171

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 172 ILVAACLFSKYPKDTRLSYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 231

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G      G IPF K         +
Sbjct: 232 LDSINATASAIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 291

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L  +R+ +    
Sbjct: 292 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 351

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +   L+D +     +FE  Y  YE+     +    + I AV L+  M+     T
Sbjct: 352 TLFSPSDAPGLYDAFFADQDKFEALYVKYEQDPAIRK----KTIKAVDLFSLMMQERAGT 407

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP       V  SNLC EI L +           E A+C L + NL
Sbjct: 408 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNL 467

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         + L      AVR LD ++D   + ++ A+K +   R +G+G++ +   L
Sbjct: 468 GAIEK-----LEDLEEMADLAVRALDALLDYQDYPLKAAQKGSMNRRTLGIGVINYAYYL 522

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+    + +   + E I F+ + ASV+LA+E G   +F  + + QG+ PID+  
Sbjct: 523 AKNGARYSDGSGLALTHRTFEAIQFYLLKASVQLAREFGPCPAFNETTYAQGILPIDTYK 582

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N    L W+ L++ +KT+G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 583 KDLDN----LCNEPLHLDWETLREEIKTVGLRNSTLTALMPSETSSQISNSTNGIEPPRG 638

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V       LK +      ++      DG +                
Sbjct: 639 LVSVKASKDGILKQVVPEYHR-LKDQ----YELLWKQPSVDGYLQ--------------- 678

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
                           QK++DQA S N          ++   K+L      A+  GLKT 
Sbjct: 679 -----------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTL 727

Query: 901 YYLRSR 906
           YY  +R
Sbjct: 728 YYHNTR 733


>gi|254169166|ref|ZP_04876002.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289596591|ref|YP_003483287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197621901|gb|EDY34480.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|289534378|gb|ADD08725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 768

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 215/931 (23%), Positives = 382/931 (41%), Gaps = 177/931 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    +D  +I+ AI KAF+             ++I   L++    R+ ++    
Sbjct: 5   IKKRSGDYVLYDRKRIANAIKKAFLETGEVDTP-----EEIADELSKIVEERIQKY---- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            I  +E IQD+VE  LM+  + +  + Y++YRE R  VR A+     +  +   +  +  
Sbjct: 56  EIPSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAKKILGVEDDLKLTVNAIK- 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                          V EA   L+D   K                      +I + R + 
Sbjct: 115 ---------------VLEARYLLKDEKGK----------------------IIETPRQMF 137

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
            +   Y  +      +    EV     K+ ++      +                     
Sbjct: 138 YRTARYIALVDALYFD----EVFDLSGKQKRRNEVFAGKS-------------------- 173

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
            ++  +++  L    +         +             +   IE               
Sbjct: 174 -NLGVYEMDMLKRAYRRLNFKGHMKVDFSEFIRILNDKWD--IIE--------------- 215

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
                 +R  EFY+++ + +F+ ++PTL NS TR  QLS+CF+  VPD + GIF A++  
Sbjct: 216 ------ERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYA 269

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           AM+ K  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA   
Sbjct: 270 AMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMG 329

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            L   H D+ EF+    +   + +   + N +  + D FM  + ++  + L +P      
Sbjct: 330 VLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPR----- 381

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                   +  ++I A  +W  ++T  ++TG P + F D  N +
Sbjct: 382 ----------------------NGEEVKRIKARQVWDLIITQAWKTGDPGVIFIDEVNRK 419

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            P +H+G + S+N C E  L         CNLGSINL     N +  +DKL   I  A+ 
Sbjct: 420 HPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGKIKWDKLRKVIHIAIH 475

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + + + ++     R IGLG+MG+   L  L IPY S EAVE+A++ M+FI
Sbjct: 476 FLDNVIDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFI 535

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  +  AS++LA++RG + +++GS W              ++R+                
Sbjct: 536 NEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNATTTTIAPTGTI---- 582

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNE 809
                                 + I G S SI+P +  +YV+  + G +   +N      
Sbjct: 583 ----------------------SIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEI 620

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            K+R  + E ++ ++    GSI N++ +P+D+K+I  TA +I P W +   +  QK++D 
Sbjct: 621 AKKRGFYSEDLMLEIAKS-GSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDN 678

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVD 920
           A S  + L  + + + ++ +Y  A+ +  K     R +S        A    +  LK  +
Sbjct: 679 AVSKTVNLRYDATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKADKAIEGILKRKE 738

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
            +L  V +             ++C  D  C+
Sbjct: 739 KELLQVKLFPEEYVKLDSTETAACR-DGTCD 768


>gi|91227185|ref|ZP_01261644.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 12G01]
 gi|269967068|ref|ZP_06181136.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 40B]
 gi|91188713|gb|EAS75001.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 12G01]
 gi|269828327|gb|EEZ82593.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           alginolyticus 40B]
          Length = 760

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/789 (24%), Positives = 313/789 (39%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVSRLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ F   L    
Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFDETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L+K +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTEL-----KDSYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R     E+
Sbjct: 734 TRDGAKDEQ 742


>gi|261364562|ref|ZP_05977445.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567129|gb|EFC88689.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           mucosa ATCC 25996]
          Length = 759

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       E+  +  + 
Sbjct: 66  KAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FEHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + + RD  F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ +    R +G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+     +
Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCSEPL----LCDWESLRSDIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|326783255|ref|YP_004323799.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
 gi|310005202|gb|ADO99591.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
          Length = 770

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 321/782 (41%), Gaps = 68/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++++  DG     N  ++ ++VE AC+GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIQVIKRDGVSEPLNLDKIHVMVEHACNGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  LR+ V                     E+  R +  
Sbjct: 67  RSANDLISLDAPNYQFVAARLLLFSLRKAVYNGHPNGHPPLR---------EHVERCVSR 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
            V    +     D +   L + + ++RD+ F Y G++ + D+Y      +G   E PQ  
Sbjct: 118 SVYDASILSKYTDEEWEKLNSFMDHDRDYLFTYAGVRQVVDKYLVQDRSSGEVYETPQFM 177

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A  L   +    + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMIAATLFQDDDKFYRLEYVKKYYDAISKHRINIPTPVMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+   I G   +  GV+PFLK    T    
Sbjct: 238 TLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINTKIRGGEVQHTGVVPFLKKFESTVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  LF +R   N  
Sbjct: 298 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIANGE 357

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G + F+  Y  YE      E    + I A  L+  +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDDLYVRYE----SDEFTPRKTIGAQELFLSLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL---AHFANN 614
             ++   D CN  S  +    V+ SNLC EITL +          G I L    A     
Sbjct: 414 RLYLMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPISHIDDPKGEIALCILSAINVGK 471

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             + D+L      AVR LD +ID   + +E AK+S    R++G+G +G    L      Y
Sbjct: 472 LKNLDELDELCDLAVRGLDALIDYQEYPVEAAKQSTTNRRSLGVGYIGLAHYLAKHGANY 531

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + +A ++  +  E   +  ++AS  LA E+G    F  + +  G+ PID+     +   
Sbjct: 532 DTYKAQDLVHKLSERFQYALLTASNRLAMEKGPCGYFGKTKYADGILPIDTYKNDVDEI- 590

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +    +  W+ L+ R+K  G+RNS   A  P+ + + +   +  I+P    L +K +
Sbjct: 591 ---VPNDLQCDWEFLRGRIKEYGLRNSTLSAQMPSESSSVVSNATNGIEPPRAYLSIKKS 647

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G    +                                      LK  +   +++   
Sbjct: 648 KKGPLKQIVPQYST--------------------------------LKNAYTLLWDMPNN 675

Query: 855 W-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              I+  +  QK+ DQA S N          +E     +       +  G KT+YY  + 
Sbjct: 676 DGYIKVTAVMQKFFDQAISGNWSYNPEMYPDNEVPVSVMAQDLLNTYKYGWKTSYYQNTY 735

Query: 907 SA 908
            A
Sbjct: 736 DA 737


>gi|260598670|ref|YP_003211241.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           turicensis z3032]
 gi|260217847|emb|CBA32363.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Cronobacter
           turicensis z3032]
          Length = 774

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/792 (24%), Positives = 320/792 (40%), Gaps = 71/792 (8%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
                P+   L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+ 
Sbjct: 8   HGQVLPMNQSLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIK 67

Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
            SD+   +I ++  LI ++ P+Y  + AR  +  LR++                   LY 
Sbjct: 68  TSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYD 117

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311
                 +E G     L +   + +   +   + + RD  F Y  ++ L  +Y     + G
Sbjct: 118 HVVKM-VELGKYDHHLLQDYSEEEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTG 176

Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              E  Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q S
Sbjct: 177 EIYESAQFLYLLVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFS 236

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +R LG+ I G      G IPF K
Sbjct: 237 SCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYK 296

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                  + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L 
Sbjct: 297 HFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLM 356

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +R+ +    TLFSP +V  L+D +     EFE  Y  YE+     E    ++I A  L+
Sbjct: 357 YQRLLKGEDITLFSPSDVPGLYDAFFANQDEFERLYTTYEQD----ESIRKQRIKASELF 412

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             M+     TG  +I   D CN  SP    V  V  SNLC EI L +   +    + G I
Sbjct: 413 SLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDDSGEI 472

Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            L              D+L      AVR LD ++D   + I  AK+     R +G+G++ 
Sbjct: 473 ALCTLSAFNLGAIDSLDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVIN 532

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ P
Sbjct: 533 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILP 592

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +      +       WD L++ +KT G+RNS   A+ P+ T + I   +  I
Sbjct: 593 IDTYKKDLDAIASEPL----HYDWDALRESIKTHGLRNSTLSALMPSETSSQISNATNGI 648

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P   ++ +K++  G    V                                    + LK
Sbjct: 649 EPPRGHISIKASKDGILRQVVPDY--------------------------------EQLK 676

Query: 843 KIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWL 894
             +   +E+      ++     QK+IDQ+ S N   D       +   ++L      A+ 
Sbjct: 677 DKYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPTRFTSGKVPMQQLLKDLLTAYK 736

Query: 895 MGLKTTYYLRSR 906
           +G+KT YY  +R
Sbjct: 737 LGVKTLYYQNTR 748


>gi|330829607|ref|YP_004392559.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           veronii B565]
 gi|328804743|gb|AEB49942.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas
           veronii B565]
          Length = 755

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/789 (24%), Positives = 314/789 (39%), Gaps = 69/789 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I 
Sbjct: 3   LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETIIK 62

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E+ P+Y  + AR  +  LR++                      ++  R ++ G
Sbjct: 63  ATADLISEQTPDYQYMAARLAIFHLRKKAYGQFEPPHL-----------YQHVARLVDMG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + L E     +   L   L + RD  F Y  ++ L  +Y     + G   E PQ  +
Sbjct: 112 KYDKHLLEDYTQAEFEELNTHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 171

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 172 ILVAACLFSKYPKDTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 231

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G      G IPF K         +
Sbjct: 232 LDSINATASSIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 291

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L  +R+ +    
Sbjct: 292 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 351

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +   L+D +     +FE  Y  YE+     +    + + AV L+  M+     T
Sbjct: 352 TLFSPSDAPGLYDAFFADQDKFEELYVKYEQDPAIRK----KTLKAVDLFSLMMQERAGT 407

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 408 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNIDDESGEIALCTLSAFNL 467

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 + L      AVR LD ++D   + I  AKK +   R +G+G++ +   L     
Sbjct: 468 GAIEKLEDLEEMADLAVRALDALLDYQDYPIAAAKKGSMGRRTLGIGVINYAYYLAKNGA 527

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+    + +   + E I ++ + ASV+LA+E G    F  + + QG+ PID+     + 
Sbjct: 528 RYSDGSGLALTHRTFEAIQYYLLKASVQLAREFGPCPLFGETTYAQGILPIDTYKKDLDA 587

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N    L W+ L++ +K++G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 588 ----LCNEPLHLDWESLREEIKSVGLRNSTLTALMPSETSSQISNATNGIEPPRGLVSVK 643

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V       LK +      ++      DG +                     
Sbjct: 644 ASKDGILKQVVPEYDR-LKDQ----YELLWKQPSVDGYLQ-------------------- 678

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N          ++   K+L      A+  GLKT YY  +
Sbjct: 679 ------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTLYYHNT 732

Query: 906 RSATSVEKS 914
           R      ++
Sbjct: 733 RDGADDAQT 741


>gi|255065943|ref|ZP_05317798.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           sicca ATCC 29256]
 gi|255049854|gb|EET45318.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           sicca ATCC 29256]
          Length = 759

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + + RD  F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YILVAMCLFSKYPQETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L+D +     EFE  Y  YE+  +  +    R +SA  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ +    R +G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + ++ + ASV LA+E GA   F  +++ QG  PID+     +
Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|261211024|ref|ZP_05925314.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC341]
 gi|260839999|gb|EEX66599.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC341]
          Length = 760

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 190/790 (24%), Positives = 312/790 (39%), Gaps = 69/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++    +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGEYEPPTL-----------FKHVTNMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +S         G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A++S+   R +G+G++ +   L    
Sbjct: 469 LGAIESLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKS 914
           +R     E++
Sbjct: 734 TRDGAKDEQT 743


>gi|148978905|ref|ZP_01815225.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962103|gb|EDK27389.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales
           bacterium SWAT-3]
          Length = 760

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  + ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVAKLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G     L E     +   L + + ++RD  F Y  ++ L  +YF    +     E  Q  
Sbjct: 113 GKYDSHLMEDYTKAEFDELDSYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     ++ +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEELYVKYE----NDPSIKRETVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D LA      VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCDEPLHYDWDALREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V    +N  +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFLNLKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R     ++
Sbjct: 734 TRDGAKDDQ 742


>gi|262402401|ref|ZP_06078962.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC586]
 gi|262351183|gb|EEZ00316.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp.
           RC586]
          Length = 760

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 189/790 (23%), Positives = 311/790 (39%), Gaps = 69/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++    +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGEYEPPTL-----------FKHVTNMVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +   L+D +     EFE  Y  YE           + + A+ ++  ++     
Sbjct: 353 ITLFSPSDAPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +S         G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A++S+   R +G+G++ +   L    
Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKS 914
           +R     E++
Sbjct: 734 TRDGAKDEQT 743


>gi|301156449|emb|CBW15920.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 756

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 198/796 (24%), Positives = 325/796 (40%), Gaps = 71/796 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DGTL   N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I 
Sbjct: 5   LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  G
Sbjct: 65  AAADLISKDTPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L       +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDPALLADYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + A  
Sbjct: 294 QGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGADI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L++ +     +FE  Y  YE+  +  +    R + AV L+  ++     T
Sbjct: 354 TLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP   +   V  SNLC EI L +   +      G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L S    AVR LD ++D   + +  AK+S+   R++G+G++ +   L    +
Sbjct: 470 GKLENLDELESLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVINYAYYLAKNGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILPIDTYKNDIDS 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                        W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P   ++ +K
Sbjct: 590 ----LTQEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     N        +  ++ D+  +DG +                     
Sbjct: 646 ASKDGILKQVVPDYENL-----SDNYELLWDIPSNDGYLH-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   K L      A+  GLKT YY  +
Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNT 734

Query: 906 RSATSVEKSTLKGVDG 921
           R     E S     DG
Sbjct: 735 RD--GAEDSQEDLDDG 748


>gi|315634376|ref|ZP_07889663.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476966|gb|EFU67711.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 756

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 197/797 (24%), Positives = 325/797 (40%), Gaps = 71/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGTL   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGTLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L +     +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDHALLDDYTREEWDEMDSFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++     
Sbjct: 353 ITLFSPSDVKGLYEAFFADQDKFEELYVQYEQDPSIRK----RTVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEQGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 S----LTSEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPGNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDG 921
           +R     E S     DG
Sbjct: 734 TRD--GAEDSQEDLDDG 748


>gi|326782537|ref|YP_004323091.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
 gi|310002751|gb|ADO97150.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
          Length = 769

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 203/831 (24%), Positives = 339/831 (40%), Gaps = 91/831 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++  +G     N  ++  +VE AC GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIHVIKRNGEKTPLNLDKVHAMVEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  LR+ V                     E+  + +  
Sbjct: 67  RSANDLISLDAPNYQFVAARLLLFGLRKAVYNGHPDGHPPLL---------EHVKKCVGI 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    + +   D +   L + + +ERDF F Y G++ + D+Y      +G   E PQ  
Sbjct: 118 GVYDSAILQKYTDEEWEKLNDFMDHERDFLFTYAGIRQVTDKYLVQDRSSGEIYETPQFM 177

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L   +    + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMVAATLFQDDDKFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T    
Sbjct: 238 TLDSIFSSDMAIGQYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R  QN  
Sbjct: 298 TQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIQNGT 357

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G + F+  Y +YE           + + A  L   +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDARYVDYESDQSIPR----KTVDAQKLILDLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 414 RVYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLQHIDGQGEIALCILSAINVGKL 471

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 + D+L      AVR LD +ID   + ++ A++S    R++G+G +G    L   
Sbjct: 472 -----KNLDELDELCDLAVRGLDALIDYQEYPVKAAEQSTTNRRSLGIGYIGLAHYLAKN 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+     
Sbjct: 527 GAKYDSAKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKSDV 586

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +    +  W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 587 DEI----VPNELQCDWEFLRSRILQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRAYLS 642

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    +                                      LK  +   ++
Sbjct: 643 IKKSKKGPLKQIVPSYTT--------------------------------LKNAYTLLWD 670

Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           +      I+  +  QK+ DQA S N          +E    ++       +  G KT+YY
Sbjct: 671 MHNNDGYIKVTAVMQKFFDQAISGNWSYNPENYPDNEVPVSEMAKDLLNTYKYGWKTSYY 730

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     ++T        +    T+ ++    L      T + +C+ C
Sbjct: 731 ----------QNTYDIKKDGDDEEVKTNVDNLIDELLN----TEEEDCDSC 767


>gi|200388863|ref|ZP_03215475.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199605961|gb|EDZ04506.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 761

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/783 (24%), Positives = 316/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE     G+    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NGDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|210616054|ref|ZP_03290926.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787]
 gi|210149962|gb|EEA80971.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787]
          Length = 749

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 236/785 (30%), Positives = 369/785 (47%), Gaps = 96/785 (12%)

Query: 159 SKRLEMIVEEACSGL-QDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE-PN 215
              +   +E       +D+    +L + +       LS  +    LI ++  L  +E P 
Sbjct: 14  FTEIASYMEAIQKDFPEDIYYLGILEDKFLTFQKPELSIEENLQLLIKAAVELTTQEAPK 73

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  + AR LL    RE+            + ++  L               + + E+   
Sbjct: 74  WEMIAARLLLFTFERELRKAEESCQITTLYEKIVYLTGRGL--------YGQYILENYTK 125

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-T 333
            ++      L  ER+  F Y GL++L +RY +H   G  +E PQ  F+ +AM LA+KE  
Sbjct: 126 EEIDEFETFLAPERNDLFTYSGLELLLNRYVIHTGQGVALESPQEMFLGIAMHLAMKEQK 185

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++      FY++LS      +TPTL N+   + QLSSCF+  VPD L GI+ ++   A +
Sbjct: 186 DRALWVKRFYDMLSKLQVTMATPTLSNARKPYHQLSSCFIDIVPDSLNGIYRSIDNFAKV 245

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G R+GAV  YL+
Sbjct: 246 SKFGGGMGMYFGKVRASGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGVRQGAVAVYLD 305

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV---- 507
            WH D+ EFL+LR N GDDR + HD+  A   PD F ++   N    W L  P E+    
Sbjct: 306 VWHRDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDYFWEQARDNIEGDWYLMCPHEILTVK 365

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+ ++  Y +  +     +    R +    + R ++    ETG P+   +D 
Sbjct: 366 GYALEDCYGEAWKEKYLDCVQDDQIKK----RVVPIKDIIRLIIKSAVETGTPFTFNRDH 421

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603
            N  +P  H G+++ SNLCTEI  N S                         E  VCNL 
Sbjct: 422 VNRMNPNGHKGMIYCSNLCTEIAQNMSGIEEVEERVETVNGETVVVTVTKPGEFVVCNLA 481

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S++L         D +++A   + AVR LDNVID+N   +  AK +N  +R IGLG+ G+
Sbjct: 482 SLSLGHLNVE---DGEEIADITKCAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGY 538

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S + ++   +    I + AI AS E+A+E+G+Y+ F+GS W  G    
Sbjct: 539 HHMLAKQGISWESEQHLQFVGDVFSKIHYAAIEASSEIAKEKGSYTYFEGSDWQTGK--- 595

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                                 W++L+++VK  G+RN+  +AIAPT++ + I G S  +D
Sbjct: 596 -----------YFDKRHLKTEKWNQLREKVKQQGLRNAYLLAIAPTSSTSIIAGTSAGLD 644

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++   +G    V      EL     W                           
Sbjct: 645 PIMNRYFLEEKKNGLMPRVAP----ELSMETFW--------------------------- 673

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + +K+  +Y  AW  G+KT YY
Sbjct: 674 YYKNAHYIDQKWSVRACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEEGVKTIYY 733

Query: 903 LRSRS 907
           +RS+S
Sbjct: 734 IRSKS 738


>gi|261867685|ref|YP_003255607.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413017|gb|ACX82388.1| hypothetical protein D11S_1001 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 756

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/797 (24%), Positives = 323/797 (40%), Gaps = 71/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDPSLLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+  +  +    R + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYETFFADQDKFEQLYVQYEQDPNIRK----RTVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKLENLDELDNLADLAVRTLDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 S----LTTEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDG 921
           +R     E S     DG
Sbjct: 734 TRD--GAEDSQEDLDDG 748


>gi|89074074|ref|ZP_01160575.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           sp. SKA34]
 gi|89050212|gb|EAR55723.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           sp. SKA34]
          Length = 755

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++E A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTESIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                      ++    +E+
Sbjct: 64  KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------YDHVKNLVEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + N + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDSHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A  L     +  +      FY+  S F     TP +    T   Q SSC L    D
Sbjct: 173 YILIAAALFNKYPKETRLDYIKRFYDASSLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  ++D +    +EFE  Y  YE+ +          I A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A++S    R +G+G++ F   L    
Sbjct: 469 LGAIESLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QG+ PID+      
Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPIDTYKKDIN 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +    R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 NICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYAKYKE-----NYELLWNIGSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R   S  +
Sbjct: 734 TRDGASDSQ 742


>gi|149197801|ref|ZP_01874850.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149139022|gb|EDM27426.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 755

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/796 (24%), Positives = 317/796 (39%), Gaps = 69/796 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   DGT    + +++  +++ A   L  VS   V   ++   +DG++  D+   +I 
Sbjct: 5   IQVTKRDGTREPIDLEKIHRVIDWAAKDLNHVSVSQVELRSHVQFHDGVTTEDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +E P+Y  + AR  +  LR++        P             E+  + +E+G
Sbjct: 65  SAADLISEESPDYQYLAARLAIFHLRKKAYGQFDPPPL-----------FEHVTKLVEDG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + L E   + +   + N L + RD  F Y  ++ L  +Y     + G+  E PQ  +
Sbjct: 114 KYDKHLIEDYTEDEFNEMENALDHWRDLNFSYAAVKQLEGKYLVQNRVTGAIYESPQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M V   L     +  +    + FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 MLVGACLFSKYPKETRMDYIIRFYDAASNFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I  +            G+G +   +R LG+ I        G IPF K       + +
Sbjct: 234 LDSINASSSAIVKYVSQRAGIGLNAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH +VE  L L+ N G +  R   ++       L  +R+ +    
Sbjct: 294 QGGVRGGAATVFYPLWHREVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYERLVKKGNI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    ++FE  Y  YE             + A+ L+    +    T
Sbjct: 354 TLFSPGDVPGLYDAFFEDQEKFEELYIKYE----NDPSIQKETMKAIELFSLFASERAST 409

Query: 557 GHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  ++   D CN     Q  V  +  SNLC EI L +   E      G I L    A N 
Sbjct: 410 GRIYLQNVDHCNTHSPFQADVAPIRQSNLCLEIALPTKPLEHINDENGEIALCTLSAINL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D++      AVR LD+++D   + +  A+ S+   R +G+G++ F   L    +
Sbjct: 470 GALESLDEMEELTELAVRALDSLLDYQDYPVPAARNSSLNRRTLGIGVINFAYYLAKNGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y++  A  +  ++ E + +H I AS +LAQE G    F  + + QG+ P D+     + 
Sbjct: 530 FYSNGSANNLVHKTFESLQYHLIKASCKLAQELGPCPKFNETTYSQGIMPTDTYKSSVDD 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +     L WD+LK+ VK  GMRNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 FCNEDL----HLDWDQLKEDVKKHGMRNSTLSALMPSETSSQISNATNGIEPPRGLIAVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            +  G    V   +             ++  +  + G +                     
Sbjct: 646 QSKDGILKQVVPEIEKYKSYY-----ELLWQMPNNTGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
                   +  QK+IDQ  S N   D           K L      A+  G+KT YY  +
Sbjct: 681 ------LVAIMQKFIDQTISANTNYDPSKFEGNMVPMKTLLTDLLTAYKYGVKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVDG 921
           R      +    G  G
Sbjct: 735 RDGAGDSQEEDDGCAG 750


>gi|313668431|ref|YP_004048715.1| ribonucleotide reductase I alpha chain [Neisseria lactamica ST-640]
 gi|313005893|emb|CBN87349.1| ribonucleotide reductase I alpha chain [Neisseria lactamica 020-06]
          Length = 759

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/796 (24%), Positives = 326/796 (40%), Gaps = 71/796 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + ASV LA+E GA + FK +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKGV 919
            +R      ++ ++  
Sbjct: 735 NTRDGADDTQADIQDD 750


>gi|325201995|gb|ADY97449.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240149]
          Length = 753

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 190/782 (24%), Positives = 320/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFLY 169

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       VH SNLC EI L +   +      G I L        
Sbjct: 406 GRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    +
Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     + 
Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 586 VCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + LK  + T +++ 
Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669

Query: 853 -PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK++DQ+ S N   D       + S K++      A+  G+KT YY  
Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHN 729

Query: 905 SR 906
           +R
Sbjct: 730 TR 731


>gi|194736487|ref|YP_002115348.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194711989|gb|ACF91210.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
          Length = 780

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/791 (24%), Positives = 318/791 (40%), Gaps = 71/791 (8%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           + +  +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  
Sbjct: 15  QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           SD+   +I ++  LI ++ P+Y  + AR  +  LR++                       
Sbjct: 75  SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312
           +  + +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G 
Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183

Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E  Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SS
Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  
Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+ 
Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            M+     TG  +I   D CN  SP    V  V  SNLC EI L +          G I 
Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIA 479

Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           L              D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +      +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 600 DTYKKDLDAI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + LK 
Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            +   +E+      ++     QK+IDQ+ S N   D       +   ++L      A+  
Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 744 GVKTLYYQNTR 754


>gi|86148465|ref|ZP_01066755.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
 gi|85833762|gb|EAQ51930.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
          Length = 760

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  + ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVAKLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G     L E     +   L   + ++RD  F Y  ++ L  +YF    +     E  Q  
Sbjct: 113 GKYDSHLMEDYTKAEFDELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     ++ +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEELYVKYE----NDPSVKRETVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D LA      VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +  E  +       WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 LVCEEPL----HYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V    +N        +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFLNL-----KNNYELLWNIGNNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R     ++
Sbjct: 734 TRDGAKDDQ 742


>gi|254507982|ref|ZP_05120110.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
 gi|219549090|gb|EED26087.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
          Length = 760

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/797 (24%), Positives = 322/797 (40%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKESIDLEKIHRVIAWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + I+ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVAKLIDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   + + RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSVKKETVKAIEMFSILMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTEYKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +K  ++  D
Sbjct: 734 TRDGASDDQKDAVQPQD 750


>gi|168237292|ref|ZP_02662350.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197289598|gb|EDY28961.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 761

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|326783481|ref|YP_004324016.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
 gi|310004984|gb|ADO99374.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
          Length = 769

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/831 (23%), Positives = 329/831 (39%), Gaps = 91/831 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++   G     +  ++  + E AC GL  VS   V        +DG+  SD++  LI
Sbjct: 7   EIHVIKRSGEKTPLDLDKIHAMAEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY  V AR LL  LR+ V                     E+  + ++ 
Sbjct: 67  RSANDLISLESPNYQFVAARLLLFSLRKAVYNGHPDGHPPLL---------EHVKKCVDL 117

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    +       +   L + + ++RD+ F Y G++ + D+Y      +G   E PQ  
Sbjct: 118 GVYDDGILSKYSKEEWEKLNSFMDHDRDYLFTYAGIRQVADKYLVQDRSSGEVYETPQFM 177

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L   +    + +   ++Y+ +S       TP +    T   Q +SC L  V D
Sbjct: 178 YMMVAATLFQDDDKFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T    
Sbjct: 238 TLDSIFSSDMAIGHYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++++ + L+ N G +  R   ++ +     LF +R   N  
Sbjct: 298 TQNGIRGGSATVHFPIWHQEIQDIIVLKNNKGTEDNRVRKLDYSIQFSKLFYERFISNGI 357

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G + F+  Y +YE           + I A  L   +L    ETG
Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDSLYVDYESDLSIPR----QTIGAQELILSLLKERAETG 413

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------ETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 414 RIYIMNIDHCNTHSSFKDK--VNMSNLCQEITLPTDPINHIDGLGEIALCILSAINVGKL 471

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +      D+L      AVR LD +ID   + ++ A+ S    R++G+G +G    L   
Sbjct: 472 KS-----LDELDELCELAVRGLDALIDYQQYPVKAAENSTKNRRSLGIGFIGLAHYLAKH 526

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+     
Sbjct: 527 GANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKKEV 586

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +       W+ L+ R+   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 587 DEI----VPNDLSCDWEYLRGRIVEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 642

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                                      LK  +   ++
Sbjct: 643 VKKSKKGPLKQIVPSYTT--------------------------------LKGAYTLLWD 670

Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           +      I+  +  QK+ DQA S N          +E    ++       +  G KT+YY
Sbjct: 671 MHNNDGYIKVTAVMQKFFDQAISGNWSYNPENYSDNEVPVSEMAKDLLTTYKYGWKTSYY 730

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     ++T              +   S  +L        + +CE C
Sbjct: 731 ----------QNTYDNKKDGDEV----EQTPSVDNLIDQLITEEEDDCESC 767


>gi|218709926|ref|YP_002417547.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           splendidus LGP32]
 gi|218322945|emb|CAV19122.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           splendidus LGP32]
          Length = 760

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  + ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVTKLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G     L E     +   L   + ++RD  F Y  ++ L  +YF    +     E  Q  
Sbjct: 113 GKYDSHLMEDYTKAEFDELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     ++ +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEELYVKYE----NDPSVKRETVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D LA      VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +  E  +       WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 LVCEEPL----HYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V    +N        +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFLNL-----KNNYELLWNIGNNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R     ++
Sbjct: 734 TRDGAKDDQ 742


>gi|322617029|gb|EFY13935.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322617665|gb|EFY14564.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624705|gb|EFY21534.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322630254|gb|EFY27024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634435|gb|EFY31168.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322639145|gb|EFY35837.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640142|gb|EFY36808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645770|gb|EFY42294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651545|gb|EFY47920.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656106|gb|EFY52405.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659458|gb|EFY55705.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665920|gb|EFY62103.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669842|gb|EFY65983.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673827|gb|EFY69924.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678585|gb|EFY74641.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683619|gb|EFY79633.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322687695|gb|EFY83665.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323196208|gb|EFZ81365.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198376|gb|EFZ83478.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204186|gb|EFZ89197.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208572|gb|EFZ93511.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212338|gb|EFZ97161.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218255|gb|EGA02965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222987|gb|EGA07336.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227422|gb|EGA11587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232250|gb|EGA16353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235717|gb|EGA19801.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323241123|gb|EGA25159.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244865|gb|EGA28867.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248576|gb|EGA32507.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251596|gb|EGA35464.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255475|gb|EGA39238.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263077|gb|EGA46623.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323268137|gb|EGA51614.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270770|gb|EGA54208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 761

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|308049657|ref|YP_003913223.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Ferrimonas balearica DSM 9799]
 gi|307631847|gb|ADN76149.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Ferrimonas balearica DSM 9799]
          Length = 757

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/795 (23%), Positives = 310/795 (38%), Gaps = 69/795 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     + +++  ++  A  GL +VS   V        YDG+    +   LI 
Sbjct: 5   LLVTKRDGRKEPIDLEKIHRVIYWAAMGLDNVSVSQVELAAQIYFYDGIETEAIHETLIK 64

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI    P+Y  + AR  +  LR++                      ++  + ++  
Sbjct: 65  AAADLISADNPDYQYLAARLAVFHLRKKAFGQFEPPHL-----------YDHVTKLVQAR 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L       +   L   + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 RYDEHLLADYSREEFDELNAYIDHWRDMKFSYAAIKQLEGKYLVQNRVTGEVYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M VA  L     +  +      FY+  S F     TP +    T   Q SSC L    D 
Sbjct: 174 MLVAACLFADYPKDVRLSYVKRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G++PFLK       + +
Sbjct: 234 LDSISATSTSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGMLPFLKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE+ L L+ N G D  R   M+    I     +R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVEDLLVLKNNRGTDANRIRHMDYGVQINRALYQRLIEGGDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y+ YE+     +    + + A+ L+  ++     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQDEFERLYQQYEQDPSIRK----KTVKAITLFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP    V  V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQHVDHCNTHSPFDPRVAPVKQSNLCLEIALPTKPLSHPDDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD+++D   + I+ A+ S    R +G+G++ F   L     
Sbjct: 470 GAIEQLDELEEMADLAVRALDSLLDYQDYPIKAARISTMNRRTLGIGVINFAYYLAKNGA 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+      +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PID+     + 
Sbjct: 530 RYSDGSGNNLTHKTFEAIQYYLLKASVGLAKEKGACPAFNETTYSQGILPIDTY----KK 585

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
             +   +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 586 ALDAICDEPLHLDWEGLRAEILEHGLRNSTLSALMPSETSSQISNATNGIEPPRGLVSVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            +  G    V    +  L+ +      ++  +  + G +                     
Sbjct: 646 GSKDGVMKQVVPG-IETLRDQ----YELLWTIPNNTGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N          ++   K L      A+  GLKT YY  +
Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPSRYEGNKMPMKVLLQDLMLAYKYGLKTLYYQNT 734

Query: 906 RSATSVEKSTLKGVD 920
           R   S  ++     D
Sbjct: 735 RDGQSDSQNKADDND 749


>gi|254169182|ref|ZP_04876017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
 gi|197621840|gb|EDY34420.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aciduliprofundum boonei T469]
          Length = 768

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 219/931 (23%), Positives = 382/931 (41%), Gaps = 177/931 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    +D  +I+ AI KAF+             ++I   L++    R+ ++    
Sbjct: 5   IKKRSGDYVLYDRKRIANAIKKAFLETGEVDTP-----EEIADELSKIVEERIQKY---- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            I  +E IQD+VE  LM+  + +  + Y++YRE R  VR A+     +  +   +  +  
Sbjct: 56  EIPSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAKKILGVEDDLKLTVNAIK- 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210
                                                               +  +R L+
Sbjct: 115 ----------------------------------------------------VLEARYLL 122

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           + E      T R +  +                   E+  L  +   R      K+ L  
Sbjct: 123 KDEKGRIIETPRQMFYR-----TARYIALVDALYFDEVFDLSGKQKRRNEIFAGKSNLG- 176

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
                           YERD          L   Y        +++  + F+R+   L  
Sbjct: 177 ---------------VYERDM---------LKRAYRRLNFKGHMKVDFSEFIRI---LND 209

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
           K    E+R  EFY+++ + +F+ ++PTL NS TR  QLS+CF+  VPD + GIF A++  
Sbjct: 210 KWDIIEERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYA 269

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
           AM+ K  GG G  ++ +R  G  +  T G + G + F++V +     + QGGKR+GA   
Sbjct: 270 AMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMG 329

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            L   H D+ EF+    +   + +   + N +  + D FM  + ++  + L +P      
Sbjct: 330 VLSVHHPDILEFI---TSKDSENKVLSNFNISVAVMDEFMDALLRDDYYPLRNPR----- 381

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                   +  ++I A  +W  ++T  ++TG P + F D  N +
Sbjct: 382 ----------------------NGEEVKRIKARQVWDLIITQAWKTGDPGVIFIDEVNRK 419

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            P +H+G + S+N C E  L         CNLGSINL     N +  + KL   I  A+ 
Sbjct: 420 HPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGKIKWHKLRKVIHIAIH 475

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + + + ++     R IGLG+MG+   L  L IPY S EAVE+A++ M+FI
Sbjct: 476 FLDNVIDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFI 535

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  +  AS++LA++RG + +++GS W              ++R+                
Sbjct: 536 NEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNATTTTIAPTGTI---- 582

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNE 809
                                 + I G S SI+P +  +YV+  + G +   +N      
Sbjct: 583 ----------------------SIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEI 620

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            K+   + E ++ ++    GSI N++ +P+D+K+I  TA +I P W +   +  QK++D 
Sbjct: 621 AKKGGFYSEDLMLEIAKS-GSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDN 678

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVD 920
           A S  + L  + + + ++ +Y  A+ +  K     R +S        A    +  LK  +
Sbjct: 679 AVSKTVNLRYDATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKADKAIEGILKRKE 738

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
            +L  V +             ++C  D  C+
Sbjct: 739 KELLQVKLFPEEYVKLDSTETAACR-DGTCD 768


>gi|294787789|ref|ZP_06753033.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294484082|gb|EFG31765.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 758

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/791 (24%), Positives = 320/791 (40%), Gaps = 72/791 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   +G L   N  ++  +++ A  GL +VS   V  +++   Y+G+   D+   +I
Sbjct: 5   TLKVTKRNGQLEPINLDKIHRVLDWAAEGLNNVSVSQVELKSHIQFYNGIHTKDIHETII 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR+                       ++  + +  
Sbjct: 65  KSAADLISEETPDYQYLAARLAIFHLRKIAYGDYTPPHL-----------FDHVNKLVAS 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L     + +   L   + +ERD  F Y  ++ L  +Y     +     E PQ  
Sbjct: 114 GKYDKHLLSDYTESEFNELNQYIDHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFL 173

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +T +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 174 YILVAMCLFAKYPQTTRLDYVKRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIECDD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 234 NLDSINATTSAIVKYVSQRAGIGINAGHIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N  
Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINRLLYTRLIKNQN 353

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+     E    R ++A  L+  ++     
Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYEQ----TESIRKRTVAASDLFSILMQERAG 409

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 410 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFN 469

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D ++       AVR LD ++D   + +  AKK+    R +G+G++ +   L    
Sbjct: 470 LGAITDVNEFEPLADLAVRALDALLDYQDYPVLAAKKATMNRRTLGIGVINYAYYLAKNG 529

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + ++ + AS+ LA+E GA   F  + + QG+ PID+     +
Sbjct: 530 VKYSDGSAISLTHRTFEAMQYYLLKASMNLAKEYGACPLFNETTYAQGILPIDTYKADLD 589

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 590 K----FCDEPLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 645

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  + T +++
Sbjct: 646 KASKDGILKQVVPEFER--------------------------------LKGQYETLWQM 673

Query: 852 -DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQA S N   D            ++      A+  G+KT YY 
Sbjct: 674 GSNDGYLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKTLYYH 733

Query: 904 RSR-SATSVEK 913
            +R  A  V++
Sbjct: 734 NTRDGAEDVQQ 744


>gi|330897026|gb|EGH28547.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 417

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 199/411 (48%), Positives = 271/411 (65%), Gaps = 2/411 (0%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++   G   A  +           ++VIKRNG V  +   KI+ AI KAF+AVEG  A+ 
Sbjct: 8   ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
           S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+ 
Sbjct: 68  SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           R+  RA ++  +      P ++I   DG+    +  RL  IV EAC GL +V + ++ +E
Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           T KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L         AT
Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           HHEM  LY +    Y+  G+K  LL+  + +FDL  L   + +ERD  F YLGLQ LYDR
Sbjct: 246 HHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           YF+H +G R E+PQ FFMRVAMGLA++E  +E RA+EFYNLLSSF +M STPTLFN+GT 
Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
            PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I 
Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIK 416


>gi|225023975|ref|ZP_03713167.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC
           23834]
 gi|224943000|gb|EEG24209.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC
           23834]
          Length = 759

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/795 (24%), Positives = 320/795 (40%), Gaps = 71/795 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+   DG L   +  ++  +V  A  GL +VS   V  +++   Y+G+   D+   +I 
Sbjct: 7   LKVTKRDGRLEPIDLDKIHRVVTWAAQGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+                       ++  +   EG
Sbjct: 67  AAADLISEDTPDYQYLAARLAIFHLRKIAYGQYEPPHL-----------FDHVSKLTAEG 115

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              R + E     +   +   + + RD  F Y  ++ L  +Y     +     E PQ  +
Sbjct: 116 KYDRHILEDYSREEFDEIDGYIDHARDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L     +  +      FY+ +S F     TP +    T   Q SSC L    D 
Sbjct: 176 ILVAMCLFAKYPKATRLDYVKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 235

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G   +  G IPF K+      + +
Sbjct: 236 LDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 295

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+VE  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 296 QGGVRGGAATLFYPLWHIEVESLLVLKNNRGVEDNRVRQLDYGVQINRLLYTRLIKGGNI 355

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L+D +     EFE  Y  YE+     +    R + A  L+  ++     T
Sbjct: 356 TLFSPNEVPGLYDAFFADQDEFERLYVQYEQDPAIRK----RVVPATELFSTLMQERAGT 411

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D  N  SP       V  SNLC EI L +          G I L        
Sbjct: 412 GRIYIHNVDHSNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFNL 471

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L +    AVR LD ++D   + I  A+K+    R +G+G++ +   L    +
Sbjct: 472 GALENLDELENLSDLAVRALDALLDYQDYPIPAARKATMNRRTLGIGVINYAYYLAKHGV 531

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y++  A+ +   + E + ++ + ASV+LA+E GA   F  +++ +GV PID+     + 
Sbjct: 532 RYSNDSALALTHRTFEAMQYYLLKASVQLAKEYGACPLFGQTMYAKGVLPIDTYKKDLDS 591

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 592 ICSEPL----HYDWEALRAEIVQHGLRNSTLTALMPSETSSQIANATNGIEPPRGLVSVK 647

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    D LK  + T +++ 
Sbjct: 648 ASKDGILKQVVPEF--------------------------------DRLKNQYETLWQMG 675

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK++DQA S N   D           K++      A+  GLKT YY  
Sbjct: 676 GNDGYLKLVGIMQKFVDQAISANTSYDPKRFDGGRVPMKQMLKDLLTAYKFGLKTLYYHH 735

Query: 905 SRSATSVEKSTLKGV 919
           +R      +S ++  
Sbjct: 736 TRDGADDTQSDIQDD 750


>gi|224583239|ref|YP_002637037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467766|gb|ACN45596.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|326624096|gb|EGE30441.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 780

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/791 (24%), Positives = 318/791 (40%), Gaps = 71/791 (8%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           + +  +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  
Sbjct: 15  QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           SD+   +I ++  LI ++ P+Y  + AR  +  LR++                       
Sbjct: 75  SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312
           +  + +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G 
Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183

Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E  Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SS
Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  
Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+ 
Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            M+     TG  +I   D CN  SP    V  V  SNLC EI L +          G I 
Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479

Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           L              D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +      +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 600 DTYKKDLDAI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + LK 
Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            +   +E+      ++     QK+IDQ+ S N   D       +   ++L      A+  
Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 744 GVKTLYYQNTR 754


>gi|332970338|gb|EGK09330.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella kingae
           ATCC 23330]
          Length = 758

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 317/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   +G+L + N  ++  +++ A   L +VS   V  +++   Y+G+   D+   +I
Sbjct: 5   TLKVTKRNGSLEAINLDKIHRVLDWAAEDLNNVSVSQVEMKSHIQFYNGIRTQDIHETII 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR+                       ++  +  E 
Sbjct: 65  KSAADLISEDTPDYQYMAARLAIFHLRKIAYGDYTPPHL-----------FDHVTKLTEA 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     + +     +   +   + ++RD  F Y  ++ L  +Y     ++    E PQ  
Sbjct: 114 GKYDPHILQDYTRAEFDEINQYIDHDRDLTFSYAAVKQLEGKYLVQNRVSKQIYESPQFL 173

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 174 YMLVAMCLFAKYPKATRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 234 SLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N  
Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLLYTRLIKNQD 353

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE      +    R +SA  L+  ++     
Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYENDPTIRK----RTMSASDLFSILMQERAG 409

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L + S        G I L       
Sbjct: 410 TGRIYIQNVDHCNTHSPFNPKVAPVRQSNLCLEIALPTKSLNNINDENGEIALCTLSAFN 469

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+        VR LD ++D   + IE A+K+    R +G+G++ +   L    
Sbjct: 470 LGAIENLDEFEPLADLTVRALDALLDYQDYPIEAARKATMNRRTLGIGVINYAYYLAKNG 529

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + ++ + ASV LA+E GA   F  + + QG+ PID+     +
Sbjct: 530 VKYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFGETTYSQGILPIDTYKADLD 589

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 590 K----FCDEPLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 645

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    D LK  + T +++
Sbjct: 646 KASKDGILKQVVPEF--------------------------------DRLKSQYETLWQM 673

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQA S N   D            ++      A+  GLKT YY 
Sbjct: 674 GGNDGYLKLVGVMQKFIDQAISANTSYDPTRFEGGRVPMNQMLKDLLSAYKYGLKTLYYH 733

Query: 904 RSR 906
            +R
Sbjct: 734 NTR 736


>gi|194444716|ref|YP_002041538.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194403379|gb|ACF63601.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 761

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|167549729|ref|ZP_02343488.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325233|gb|EDZ13072.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 761

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVGKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|161613002|ref|YP_001586967.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161362366|gb|ABX66134.1| hypothetical protein SPAB_00708 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 780

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/791 (24%), Positives = 317/791 (40%), Gaps = 71/791 (8%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           + +  +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  
Sbjct: 15  QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           SD+   +I ++  LI ++ P+Y  + AR  +  LR++                       
Sbjct: 75  SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312
           +  + +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G 
Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183

Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E  Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SS
Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  
Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+ 
Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            M+     TG  +I   D CN  SP    V  V  SNLC EI L +          G I 
Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479

Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           L              D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +      +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 600 DTYKKDLDAI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + LK 
Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            +   +E+      ++     QK+IDQ+ S N   D       +   ++L      A+  
Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 744 GVKTLYYQNTR 754


>gi|204929225|ref|ZP_03220368.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321769|gb|EDZ06968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 761

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS EL++E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELSKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|56412826|ref|YP_149901.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62180850|ref|YP_217267.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|168261710|ref|ZP_02683683.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466026|ref|ZP_02699896.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168817992|ref|ZP_02829992.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|197361759|ref|YP_002141395.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56127083|gb|AAV76589.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62128483|gb|AAX66186.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|195631245|gb|EDX49805.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197093235|emb|CAR58680.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205344941|gb|EDZ31705.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349577|gb|EDZ36208.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320086714|emb|CBY96486.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322715326|gb|EFZ06897.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 761

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|168229640|ref|ZP_02654698.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469857|ref|ZP_03075841.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197249651|ref|YP_002147233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194456221|gb|EDX45060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197213354|gb|ACH50751.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205335883|gb|EDZ22647.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 761

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|156975011|ref|YP_001445918.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio harveyi
           ATCC BAA-1116]
 gi|156526605|gb|ABU71691.1| hypothetical protein VIBHAR_02733 [Vibrio harveyi ATCC BAA-1116]
          Length = 760

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/797 (24%), Positives = 318/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   + ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDKHILEDYTKAELDELDAYMDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   +    + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ F   L    
Sbjct: 469 LGAIKSLDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +  E  +       WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 LICEEEL----HYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFAEL-----KDNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSGYESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A   +K  ++  D
Sbjct: 734 TRDGAKDDQKDAVQPQD 750


>gi|238913486|ref|ZP_04657323.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 761

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPIVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|205359118|ref|ZP_02667324.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205338509|gb|EDZ25273.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 780

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/791 (24%), Positives = 317/791 (40%), Gaps = 71/791 (8%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           + +  +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  
Sbjct: 15  QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74

Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           SD+   +I ++  LI ++ P+Y  + AR  +  LR++                       
Sbjct: 75  SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312
           +  + +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G 
Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183

Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E  Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SS
Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  
Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+ 
Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFS 419

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            M+     TG  +I   D CN  SP    V  V  SNLC EI L +          G I 
Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479

Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           L              D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +      +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 600 DTYKKDLDAI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + LK 
Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            +   +E+      ++     QK+IDQ+ S N   D       +   ++L      A+  
Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 744 GVKTLYYQNTR 754


>gi|330445622|ref|ZP_08309274.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489813|dbj|GAA03771.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 755

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++E A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                      E+    + +
Sbjct: 64  KAAADLISEETPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------YEHVKNLVAK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDEHLLEDYTEEEFAVMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A  L     +  +      FY+  S F     TP +    T   Q SSC L    D
Sbjct: 173 YILIAAALFNKYPKETRLDYIKRFYDAASLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  ++D +    +EFE  Y  YE+ +          I A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A++S    R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QGV PID+     +
Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYAQGVLPIDTYKQDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +    R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYAKYKE-----NYELLWNIGSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSKQPGGKVPMKLLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R   S  +
Sbjct: 734 TRDGASDNQ 742


>gi|16765604|ref|NP_461219.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167992611|ref|ZP_02573708.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|585857|sp|P37426|RIR1_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha;
           AltName: Full=Protein B1; AltName:
           Full=Ribonucleoside-diphosphate reductase 1 R1 subunit;
           AltName: Full=Ribonucleotide reductase 1
 gi|295896|emb|CAA51452.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420816|gb|AAL21178.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205329161|gb|EDZ15925.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261247485|emb|CBG25312.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994367|gb|ACY89252.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158835|emb|CBW18348.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913267|dbj|BAJ37241.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321223023|gb|EFX48094.1| Ribonucleotide reductase of class Ia aerobic, alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323130607|gb|ADX18037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989210|gb|AEF08193.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 761

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|293392276|ref|ZP_06636610.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952810|gb|EFE02929.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 756

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/797 (24%), Positives = 322/797 (40%), Gaps = 71/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDPSLLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE   +  +    R + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEQLYVQYELDPNIRK----RTVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKLENLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 S----LTTEPLHYNWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDG 921
           +R     E S     DG
Sbjct: 734 TRD--GAEDSQEDLDDG 748


>gi|197334709|ref|YP_002156002.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           fischeri MJ11]
 gi|197316199|gb|ACH65646.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           fischeri MJ11]
          Length = 758

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G+    N  ++  ++  A  GL +VS   V  +++   YDG+  SD+   +I
Sbjct: 4   QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +    IE 
Sbjct: 64  KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQFEPPTL-----------FNHVLNLIEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +   +   + + RD  F Y  ++ L  +YF    + G+  E  Q  
Sbjct: 113 GKYDKHIVEDYTQEEFDLMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKESRLDYIKRFYDATSQFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  YE YE+            + A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFADQAEFERLYEKYEQDTSI----KRETVKAIELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       V  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLSAFN 468

Query: 615 QFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +K   L      AVR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAIEKLEELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PIDS     +
Sbjct: 529 VKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPIDSYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +     L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 AICNEEL----HLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N        +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFANL-----KNNYELLWNIGSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+ +GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYKLGLKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R   S  +
Sbjct: 734 TRDGASDSQ 742


>gi|325130343|gb|EGC53109.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis OX99.30304]
 gi|325136203|gb|EGC58811.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M0579]
 gi|325208253|gb|ADZ03705.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 759

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQ+ S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|194448974|ref|YP_002046331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|207857696|ref|YP_002244347.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|194407278|gb|ACF67497.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|206709499|emb|CAR33843.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 761

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|269963957|ref|ZP_06178266.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi
           1DA3]
 gi|269831300|gb|EEZ85450.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi
           1DA3]
          Length = 760

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 321/797 (40%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY  +  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-NHVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   +    + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ F   L    
Sbjct: 469 LGAIKSLDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +  E  +       WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 LICEEEL----HYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFTEL-----KDNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSGYESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A   +K  ++  D
Sbjct: 734 TRDGAKDDQKDAVQPQD 750


>gi|237808190|ref|YP_002892630.1| ribonucleotide-diphosphate reductase subunit alpha [Tolumonas
           auensis DSM 9187]
 gi|237500451|gb|ACQ93044.1| ribonucleoside-diphosphate reductase, alpha subunit [Tolumonas
           auensis DSM 9187]
          Length = 758

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 203/796 (25%), Positives = 310/796 (38%), Gaps = 69/796 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   D    + +  ++  +V  A  GLQ VS   V    +   YDG+  SD+   LI
Sbjct: 4   SLMVTKRDNHTEALDLDKIHRVVTWAAEGLQGVSVSQVELSAHIQFYDGIRTSDIHETLI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++                      E     +E 
Sbjct: 64  KSAADLISEQAPDYQYMAARLAMFHLRKKAYGGFTPPSL-----------FEQVKTQVEA 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   L   L +ERD  F Y  ++ L  +Y     + G   E PQ  
Sbjct: 113 GRYDQQLLTDYSKEEFDLLDGYLAHERDMHFAYAAVKQLEGKYLLQNRVTGEIYESPQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L      T +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YMLVAACLFANYPRTTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ Q   
Sbjct: 293 SQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEENRVRHMDYGVQINRLMYQRLIQGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +   L+D +     EFE  Y  YE+     +    R++ AV L+  ++     
Sbjct: 353 ITLFSPSDAPGLYDAFFADQAEFERLYLQYEKDPAIRK----RQMKAVELFSLLMQERAG 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +  +   G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLDHYLDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK      R +G+G++ +   L    
Sbjct: 469 LGAIESLDELEPLAELAVRALDALLDYQDYPIPAAKNGAMWRRPLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + ASV+LA+E GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSALGLTHRTFEAIQYYLLKASVKLAKEFGACPRFNETTYAQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                       L WD L+  ++  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 D----LCQEPLLLDWDSLRHEIRQHGLRNSTLTALMPSETSSQIANATNGIEPPRGLISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++     +DG +                    
Sbjct: 645 KASKDGILRQVVPDYTEL-----KDNYELLWSQPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  GLKT YY  
Sbjct: 681 -------LVGVMQKFVDQAISANTSYDPSRFEGHKVPMKQLLKDLLTAYKYGLKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVD 920
           +R      +  +   D
Sbjct: 734 TRDGADDAQLQVAQSD 749


>gi|90581240|ref|ZP_01237038.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum
           S14]
 gi|90437611|gb|EAS62804.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum
           S14]
          Length = 755

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/789 (24%), Positives = 315/789 (39%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++E A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                      E+    + +
Sbjct: 64  KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------YEHVKNLVAK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + N + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDGHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A  L     +  +      FY+  S F     TP +    T   Q SSC L    D
Sbjct: 173 YVLIAAALFNKYPKETRLDYIKRFYDASSLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGES 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  ++D +    +EFE  Y  YE+ +          I A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A++S    R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  E+ E I ++ + ASV LA+E+GA  +F  + + QG+ PID+      
Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPIDTYKKDIN 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +    R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 NICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V          +   +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEY-----AKYKDNYELLWNIGNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R   S  +
Sbjct: 734 TRDGASDSQ 742


>gi|309379221|emb|CBX22178.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           lactamica Y92-1009]
          Length = 759

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/796 (24%), Positives = 325/796 (40%), Gaps = 71/796 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +    
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTGA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + ASV LA+E GA + FK +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKGV 919
            +R      ++ ++  
Sbjct: 735 NTRDGADDTQADIQDD 750


>gi|15602582|ref|NP_245654.1| ribonucleotide-diphosphate reductase subunit alpha [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721011|gb|AAK02801.1| NrdA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 756

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/794 (24%), Positives = 316/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG L   +  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGHLEPIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   + + L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDPALLVDYTREEWDEMDSYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSKYPTETRLSYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+          R + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEQLYLQYEQDPTIR----QRSVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDEKGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AKKS+   R++G+G++ +   L    
Sbjct: 469 LGTLENLDELEGLADLAVRALDALLDYQDYPVIAAKKSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E G    F  + + QG+ PID+     +
Sbjct: 529 VRYSDSSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYSQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 N----LTKEPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ DL  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYETLGE-----NYELLWDLPNNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  +  
Sbjct: 734 TRDGAEDVQEDIDD 747


>gi|56460471|ref|YP_155752.1| ribonucleotide-diphosphate reductase subunit alpha [Idiomarina
           loihiensis L2TR]
 gi|56179481|gb|AAV82203.1| Ribonucleotide reductase, alpha subunit [Idiomarina loihiensis
           L2TR]
          Length = 776

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/833 (22%), Positives = 321/833 (38%), Gaps = 83/833 (9%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            +L +    G     N  ++  ++  A  GL +VS+  V  +++   YDG+   D+   +
Sbjct: 3   EQLYVTKRSGEREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETI 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI +E P+Y  + AR  +  LR+                +M           + 
Sbjct: 63  IKAAADLISEEAPDYQYMAARLAIFHLRKRAYGKFEPPRLYDQVKKM-----------VA 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           E      L E   + +   +   L + RD  F Y  ++ L ++Y     + G   E  Q 
Sbjct: 112 EHRYDEHLLEDYTEAEFDQMDEILDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQF 171

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     ++ +      FY+  S F     TP +    T   Q SSC L    
Sbjct: 172 LYILVAACLFANYPKSTRMDYVKRFYDAASEFKISLPTPIMSGVRTPTRQFSSCVLIEAG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I        G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++          +R+ ++ 
Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRTMYQRLIKDD 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +     EFE  Y  YE+     E    ++I A+ L+   +    
Sbjct: 352 YITLFSPSDVPGLYDAFFEDQDEFERLYLQYEQD----ESIRKKRIKAIELFGLFMQERA 407

Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  ++   D CN  SP       +  SNLC EI L +          G I L      
Sbjct: 408 STGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLSHVNDEEGEIALCTLSAF 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 +  +  +    AVR LD+++D   + +  A  +    R +G+G++ F   L   
Sbjct: 468 NLGKIENLGEFENLADLAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINFAYYLAKH 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +  ++ E I ++ + AS+ LA+ERGA   F  + + QG+ P D+     
Sbjct: 528 GVKYSDGSANGLVHQTFEAIQYYLMQASMNLAKERGACPKFNETTYSQGIMPTDTYKKDL 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       +    L WD+L+  +K  GMRNS   A+ P+ T + I   +  I+P    + 
Sbjct: 588 DKV----CDEPLHLDWDKLRADIKQHGMRNSTLSALMPSETSSQISNATNGIEPPRGFVS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +KS+  G    V                                    ++LK  +   ++
Sbjct: 644 IKSSKDGVTKQVVPDY--------------------------------ENLKDKYELLWQ 671

Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY 902
           I +    +E     QK++DQ  S N   D       +   K+L      A+ +G+KT YY
Sbjct: 672 IPNNKGYLELVGIMQKFVDQTISANTNYDPSKFQAGKVPMKQLLQDLLTAYKLGVKTLYY 731

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
                      +T  G     + +      +++ +         D +C    C
Sbjct: 732 ----------HNTRDGAADNQSDIAARKGAAASQAQPTEVIIEEDDDCAGGAC 774


>gi|312885177|ref|ZP_07744857.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367190|gb|EFP94762.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 760

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 319/797 (40%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      E+  + +E 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FEHVTKLVES 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +LV L + + ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDKHILEDYTQAELVELDSFIDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIFESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKHNRLSYIKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHGESRALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     +FE  Y  YE      +      + A+ L+  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDKFERLYVQYE----NDDTVKKETVKAIELFSILMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSQVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D  A      VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAIKSLDDFAELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I +H + ASV LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVNLAKEQGKCPLFHETNYAKGLLPIDTYKKDTD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 SI----CDEPLHYDWDSLREEIVEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFSEYKE-----NYELLWDIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +K  ++  D
Sbjct: 734 TRDGASDDQKDAVQPQD 750


>gi|261392426|emb|CAX49971.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Neisseria meningitidis 8013]
          Length = 759

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|326782932|ref|YP_004323330.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
 gi|310004191|gb|ADO98585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
          Length = 772

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/829 (23%), Positives = 335/829 (40%), Gaps = 92/829 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +G     +  ++  +VE AC GL  VS   V   +    +DG+  +D++  LI 
Sbjct: 14  INVTKREGEKTPLDLNKVHKMVELACEGLAGVSESAVEINSGLQFFDGIKTADIQEILIR 73

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI    PNY  V AR LL  LR+ V                     E+  + I++G
Sbjct: 74  SANDLISLDHPNYQYVAARLLLFGLRKAVYNGHPDGHPPLL---------EHVKKCIDKG 124

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
           V    +     + +   L + + ++RD+ F Y G++ + D+Y      +G   E PQ  +
Sbjct: 125 VYDSSIVSKYTEEEWEKLNSYIDHDRDYLFTYAGIRQVVDKYLVQDRSSGEVYETPQFMY 184

Query: 322 MRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M VA+ L   +    + +   ++Y+ +S       TP +    T   Q +SC L  V D 
Sbjct: 185 MMVAITLFQDDDKFYRLEYVRKYYDAISKHRLNIPTPIMGGVRTPLRQFASCVLVDVDDT 244

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I     +  GV+PFLK    T     
Sbjct: 245 LDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRSGEVQHTGVVPFLKKFESTVRCCT 304

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R   +   
Sbjct: 305 QNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISQLFYQRFIDDRSI 364

Query: 500 TLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +LFSP +V  L++ +G   F+  Y  YE           + + A  L   +L    ETG 
Sbjct: 365 SLFSPHDVPGLYEAFGTPEFDDLYVEYENDRAIPR----KTMKAQKLILDLLKERAETGR 420

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------ETAVCNLGSINLLAHF 611
            +I   D CN  S  +    V+ SNLC EITL +          E A+C L +IN+    
Sbjct: 421 LYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPIQHIDGSGEIALCILSAINVGKL- 477

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + ++L      AVR LD +ID   + +  AK+S    R++G+G +G    L    
Sbjct: 478 ----KNLEELDELCELAVRGLDALIDYQQYPVNAAKQSTLNRRSLGIGYIGLAHYLAKNG 533

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y S +A ++  +  E   +  ++AS  +A E+G    F  + +  G+ PID+     +
Sbjct: 534 AKYDSQKAFDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKSEVD 593

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+ R+K  G+R+S   A  P+ + + +   +  I+P    L V
Sbjct: 594 EI----VPNDLSCDWEYLRGRIKEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSV 649

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K +  G    +     N LK     +  ++ D+  +DG                      
Sbjct: 650 KKSKKGPLKQIVPSY-NSLKA----NYTLLWDMHNNDG---------------------- 682

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                I+  +  QK+ DQA S N          +E     +       +  G KT+YY  
Sbjct: 683 ----YIKVTAVMQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYKYGWKTSYYQN 738

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +                  +A    D   +   L      + + +C+ C
Sbjct: 739 T-----------------YDAKKDGDDEPNVDKLINDILTSEEEDCDSC 770


>gi|260778826|ref|ZP_05887718.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604990|gb|EEX31285.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 760

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/797 (24%), Positives = 316/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  R I+ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVSRLIDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSIKKESVKAIEMFSILMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASV LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPLFGETNYAKGLLPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTE-----YKDNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +K  ++  D
Sbjct: 734 TRDGASDDQKDAVQPQD 750


>gi|188590737|ref|YP_001919719.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188501018|gb|ACD54154.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 741

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 238/790 (30%), Positives = 375/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           L+ + + A  G++D        +  K +     DG+  +D+  +LI  S  L    EPN+
Sbjct: 2   LKKLCDLAIEGIKDNDGTYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDIEPNW 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               +   + +L  +V         K     +   Y E+     E  +    + E+    
Sbjct: 62  QYAASTIYMYELYDKVRKNRNLDISK----NLYDNYYEFIKELTERNLYGEYILENYSKE 117

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--T 333
           D++ L  ++K ERDF F Y G++++  RY +   N   IE+PQ  FM +AM LA+ E   
Sbjct: 118 DVLELEKEIKPERDFLFNYSGIELVAKRYLVQDFNRKVIELPQQMFMGIAMHLAIPEVKE 177

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FYN+LS      +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL- 510
            WH D+ EFL +R N GDDR++ HD+      PDLF K   +N    W +  P E+ +  
Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTK 357

Query: 511 ----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                D YG+E+E  Y          +    R I    L R ++    ETG P+  F+D 
Sbjct: 358 GYCLEDFYGEEWEAKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDS 413

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+                        +  VCNL 
Sbjct: 414 ANKMNPNKHNGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLS 473

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L         + ++L   + T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 474 SLVLGNIDVL---NDEELEYVVETQIRAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGY 530

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I +   +     D+  E I++++I AS+ L++E+G Y  F+GS WD G    
Sbjct: 531 HHMLANNKIHWTEEKHRTFVDKVYERINYYSIKASMNLSKEKGKYELFEGSDWDNG---- 586

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     +   +   +   W +LK+ VK+ GMRN   +A+AP  + A I G S+ ID
Sbjct: 587 ----------NYFELRDYNDEKWIDLKESVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     Y++             L                                +D   
Sbjct: 637 PIMARFYLEEKKGSIIPKTAPNL-------------------------------SEDNYW 665

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + TA+ ++  W +E    RQ+ IDQ QS NLY+  + + +++  +Y +A   G+K+ YY
Sbjct: 666 YYNTAYNLEQGWCVEMNGVRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725

Query: 903 LRSRSATSVE 912
           +RS+S    E
Sbjct: 726 VRSKSLEVTE 735


>gi|197262131|ref|ZP_03162205.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197240386|gb|EDY23006.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 761

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLQEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|84386982|ref|ZP_00990006.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           splendidus 12B01]
 gi|84378272|gb|EAP95131.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio
           splendidus 12B01]
          Length = 760

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V  + +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  + ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVAKLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G     L E     +   L   + ++RD  F Y  ++ L  +YF    +     E  Q  
Sbjct: 113 GKYDSHLMEDYTKAEFEELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     ++ +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +    + FE  Y  YE             + AV L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEALYVKYE----NDPSVKRETVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D LA      VR LD ++D   + +  A+KS    R +G+G++ +   L    
Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +  E  +       WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 LVCEEPL----HYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V    +N        +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFLNL-----KDNYELLWNIGTNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R     ++
Sbjct: 734 TRDGAKDDQ 742


>gi|329298016|ref|ZP_08255352.1| ribonucleotide-diphosphate reductase subunit alpha [Plautia stali
           symbiont]
          Length = 761

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/782 (25%), Positives = 319/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++  +                LY +     +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYSQFEPP----------KLYDQIVKM-VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDRHLLEDYSTEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYVQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ +   L    
Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I +  + AS ELA+E+GA   FK + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYWLLKASNELAKEQGACPWFKETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 SV----CNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++ ++  +DG +                    
Sbjct: 645 KASKDGVLRQVVPEYER-LKDQ----YELLWEMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPGRFANGKVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|28898708|ref|NP_798313.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839544|ref|ZP_01992211.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|260363693|ref|ZP_05776477.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus K5030]
 gi|260879740|ref|ZP_05892095.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260898786|ref|ZP_05907227.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260901599|ref|ZP_05909994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28806926|dbj|BAC60197.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746925|gb|EDM57913.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|308086602|gb|EFO36297.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308093358|gb|EFO43053.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308108672|gb|EFO46212.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308113387|gb|EFO50927.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus K5030]
 gi|328474727|gb|EGF45532.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           parahaemolyticus 10329]
          Length = 760

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/797 (23%), Positives = 316/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   S +  ++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRDGRKESIDLDKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FDHVSRLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L + + ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYSKAELDELDSYIDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSVKKETVKAIEMFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ F   L    
Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + ++ + ASV LA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LICDEELHYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTEL-----KNNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A   +K  ++  D
Sbjct: 734 TRDGAKDDQKDAVQPQD 750


>gi|323494791|ref|ZP_08099890.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           brasiliensis LMG 20546]
 gi|323310984|gb|EGA64149.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           brasiliensis LMG 20546]
          Length = 760

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/797 (24%), Positives = 322/797 (40%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   S + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDEYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSIKKETVKAIEMFSILMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             +    D         VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGSIKSLDDFEELSNLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASVELA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFDETNYAKGLMPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LICDEPLHYDWDGLRQEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTE-----YKDNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +K  ++  D
Sbjct: 734 TRDGASDDQKDAVQPQD 750


>gi|317048918|ref|YP_004116566.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp.
           At-9b]
 gi|316950535|gb|ADU70010.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           At-9b]
          Length = 761

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/782 (25%), Positives = 317/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY +     +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDQVVKM-VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDRHLLEDYSKEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRATRMDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTTYEKDDSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ P D+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPTDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 SI----CNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWEMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPSRFANGKVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|251792453|ref|YP_003007179.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533846|gb|ACS97092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Aggregatibacter aphrophilus NJ8700]
          Length = 756

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/797 (24%), Positives = 324/797 (40%), Gaps = 71/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG L   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGKLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  
Sbjct: 64  KAAADLISKDTPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDHALLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++++     +FE  Y  YE+     +    R + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYEVFFADQDKFEELYVQYEQDPSIRK----RAVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L +    AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 S----LTSEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPGNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDG 921
           +R     E S     DG
Sbjct: 734 TRD--GAEDSQEDLDDG 748


>gi|260772918|ref|ZP_05881834.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP
           69.14]
 gi|260612057|gb|EEX37260.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP
           69.14]
          Length = 760

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 317/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++E A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVIEWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            SS  LI +E P+Y  + AR  +  LR++              +E   LY ++    + +
Sbjct: 64  KSSADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVSAMVAK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G     L E     +   +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDSHLLEDYSAEEFALMDTFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAACLFAKYPKATRLDFVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYRRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y NYE           R + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVNYE----NDPSIKKRTVKALEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A+KS    R +G+G++ +   L    
Sbjct: 469 LGAIEKLDDFEELAELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E + ++ + ASV LA+E+G   +F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVLLAKEQGRCPAFNETNYAKGLLPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----TLCDEPLHYDWDSLRNEIMEFGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V    +   +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFIKLKE-----NYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKYGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A   +K  ++  D
Sbjct: 734 TRDGAKDDQKDAVQAQD 750


>gi|254672041|emb|CBA04616.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha275]
          Length = 759

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/783 (24%), Positives = 319/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|332290531|ref|YP_004421383.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium
           anatis UMN179]
 gi|330433427|gb|AEC18486.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium
           anatis UMN179]
          Length = 756

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/797 (24%), Positives = 318/797 (39%), Gaps = 71/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L++   DG L   N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLRVTKRDGRLEPINLDKIHRVITWAAEGLNNVSVSQVELRSHIQFYEGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI K+ P+Y  + AR  +  LR++                   LY E   R +  
Sbjct: 64  KSAADLISKDTPDYQYLAARLAIFHLRKKAFGHFEPP----------RLY-EQVKRLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDASLLVDYSREEWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAASLFAQYPKETRLNYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + A 
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGAD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+  +    ++FE  Y  YE+  D  +    R + A+ L+  ++     
Sbjct: 353 ITLFSPSDVPGLYAAFFADQEKFEQLYLKYEQDPDIRK----RSVKAIELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLQHIHDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + ++ A+      RA+G+G++ +   L    
Sbjct: 469 LGALNNLDELEDLADLAVRALDALLDYQNYPVKAAEIGAMGRRALGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS +LA+E G    F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASNQLAKEFGPCKFFDETTYAKGILPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 S----LTKEPLHYDWESLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPDYENLSE-----NYELLWDIPNNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                    +  QK+IDQ+ S N   D       +   K L      A+  G+KT YY  
Sbjct: 681 -------LVAIMQKFIDQSISANTNYDPQRFEDGKVPMKVLLKDLLTAYKYGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDG 921
           +R     E S     DG
Sbjct: 734 TRD--GAEDSQEDLDDG 748


>gi|325138280|gb|EGC60849.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis ES14902]
 gi|325142422|gb|EGC64826.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis 961-5945]
 gi|325198445|gb|ADY93901.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis G2136]
          Length = 753

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/795 (24%), Positives = 324/795 (40%), Gaps = 71/795 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP    V  VH SNLC EI L +   +      G I L        
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    +
Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     + 
Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 586 VCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + LK  + T +++ 
Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKDAYETLWQLP 669

Query: 853 -PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK++DQ+ S N  Y          S K++      A+  G+KT YY  
Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYHN 729

Query: 905 SRSATSVEKSTLKGV 919
           +R      ++ ++  
Sbjct: 730 TRDGADDTQADIQDD 744


>gi|308389412|gb|ADO31732.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           alpha710]
          Length = 759

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|325204294|gb|ADY99747.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240355]
          Length = 753

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 321/782 (41%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYIRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP    V  VH SNLC EI L +   +      G I L        
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    +
Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     + 
Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 586 V----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + LK  + T +++ 
Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669

Query: 853 -PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK++DQA S N   D       + S K++      A+  G+KT YY  
Sbjct: 670 GNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHN 729

Query: 905 SR 906
           +R
Sbjct: 730 TR 731


>gi|325200081|gb|ADY95536.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis H44/76]
          Length = 753

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/782 (24%), Positives = 321/782 (41%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + G
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP    V  VH SNLC EI L +   +      G I L        
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    +
Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     + 
Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 586 VCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + LK  + T +++ 
Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669

Query: 853 -PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK++DQ+ S N   D       + S K++      A+  G+KT YY  
Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHN 729

Query: 905 SR 906
           +R
Sbjct: 730 TR 731


>gi|59711809|ref|YP_204585.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio fischeri
           ES114]
 gi|59479910|gb|AAW85697.1| ribonucleoside diphosphate reductase 1, alpha subunit [Vibrio
           fischeri ES114]
          Length = 758

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G+    N  ++  ++  A  GL +VS   V  +++   YDG+  SD+   +I
Sbjct: 4   QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +    IE 
Sbjct: 64  KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQFEPPTL-----------FNHVLNLIEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +   +   + + RD  F Y  ++ L  +YF    + G+  E  Q  
Sbjct: 113 GKYDKHIVEDYTQEEFALMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKDTRLDYIKRFYDATSQFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  YE YE+            + A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFADQAEFERLYEKYEQDTSI----KRETVKAIELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       V  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLSAFN 468

Query: 615 QFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               +K   L      AVR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAIEKLEELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PIDS     +
Sbjct: 529 VKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPIDSYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +     L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 AICNEEL----HLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N        +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFANL-----KNNYELLWNIGSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+ +GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYKLGLKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R   S  +
Sbjct: 734 TRDGASDSQ 742


>gi|242238483|ref|YP_002986664.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya
           dadantii Ech703]
 gi|242130540|gb|ACS84842.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya
           dadantii Ech703]
          Length = 762

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 198/807 (24%), Positives = 319/807 (39%), Gaps = 71/807 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY       ++ 
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAFGQFEPPT----------LYDHVVNM-VDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDRHLLEDYSQEEFTLMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFTDQDEFERLYVQYEQDDSIRK----KQLKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   +   V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D  +L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAISDLSELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ P+D+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNVLAQEQGACPWFGETTYAQGILPVDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 SV----CNEALHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +++
Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQA S N   D       +   K+L      A+  GLKT YY 
Sbjct: 673 PSNDGYLQLVGIMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGLKTLYYQ 732

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930
            +R      +  L     + +      
Sbjct: 733 NTRDGAEDVQDDLLDTTPQDDGCESGA 759


>gi|325265978|ref|ZP_08132664.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella
           denitrificans ATCC 33394]
 gi|324982616|gb|EGC18242.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella
           denitrificans ATCC 33394]
          Length = 758

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/790 (24%), Positives = 314/790 (39%), Gaps = 71/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L   N  ++  +++ A +GL +VS   V  +++   Y+G+   D+   +I
Sbjct: 5   TLKVTKRDGRLEPINLDKIHRVLDWAAAGLDNVSVSQVELKSHIQFYNGIRTEDIHETII 64

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR+                       ++  R  E 
Sbjct: 65  KSAADLISEETPDYQYLAARLAIFHLRKIAYGEYQPPHL-----------FDHVRRMTEM 113

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD  F Y  ++ L  +Y     +     E PQ  
Sbjct: 114 GKYDRHILEDYSKEEFDELNQYINHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFL 173

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 174 YILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIMSGVRTPTRQFSSCVLIECDD 233

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGLG+ I G   +  G IPF K+      + 
Sbjct: 234 SLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +N  
Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIKNQN 353

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+     E    R +SA  L+  ++     
Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYEQD----ESIRKRTLSASDLFSILMQERAG 409

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 410 TGRVYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 469

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D ++       AVR LD ++D   + I  A K+    R +G+G++ +   L    
Sbjct: 470 LGAISDLNEFEPLADLAVRALDALLDYQDYPIPAAYKATMNRRTLGIGVINYAYYLAKNG 529

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E + +H + AS+ LA+E GA   F  + + QG+ PID+     +
Sbjct: 530 VKYSDGSAINLTHRTFEAMQYHLLKASMNLAKEYGACPLFNETTYAQGILPIDTYKADLD 589

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 590 K----FCDEPLHLDWEGLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 645

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  + T +++
Sbjct: 646 KASKDGILKQVVPEFER--------------------------------LKGQYETLWQM 673

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+ DQA S N   D            ++      A+  G+KT YY 
Sbjct: 674 GGNDGYLKLVGIMQKFTDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKTLYYH 733

Query: 904 RSRSATSVEK 913
            +R      +
Sbjct: 734 NTRDGADDVQ 743


>gi|254805094|ref|YP_003083315.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha14]
 gi|254668636|emb|CBA06263.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha14]
          Length = 759

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQ+ S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|325128286|gb|EGC51170.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis N1568]
          Length = 753

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/795 (24%), Positives = 323/795 (40%), Gaps = 71/795 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I 
Sbjct: 1   MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR+                       ++  +  +  
Sbjct: 61  AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAA 109

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  +
Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGL + I G   +  G IPF K+      + +
Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     T
Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405

Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP    V  VH SNLC EI L +   +      G I L        
Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    +
Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     + 
Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 586 V----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + LK  + T +++ 
Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669

Query: 853 -PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK++DQ+ S N  Y          S K++      A+  G+KT YY  
Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYHN 729

Query: 905 SRSATSVEKSTLKGV 919
           +R      ++ ++  
Sbjct: 730 TRDGADDTQADIQDD 744


>gi|269102946|ref|ZP_06155643.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162844|gb|EEZ41340.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 755

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/789 (23%), Positives = 318/789 (40%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  +++ A  GL++VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLTVTKRDGRTETLDLDKIHRVLDWAAEGLENVSVSQVELKSHIQFYDGMRTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                      ++    +E+
Sbjct: 64  KAAADLISEETPDYQYMAARLAIFHLRKKAYGQFEPPTL-----------YKHVSHLVEQ 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E   + +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTEEEFAVIDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YVLIAACLFAKYPKETRLDYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+     E    + + A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFADQVEFERLYTQYEQD----ESIKKQSVKAIDLFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYVQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A++S    R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  E+ E I ++ + AS+ LA+E+GA  +F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASLGLAKEQGACPAFNETTYAQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +    R  W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYTK-----YKDNYELLWNIGGNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSRQPGGKVPMKLLLKDLLTAYKLGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R   S  +
Sbjct: 734 TRDGASDSQ 742


>gi|296103862|ref|YP_003614008.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058321|gb|ADF63059.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 761

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 199/782 (25%), Positives = 317/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISREAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRDTRLEYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  E+ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +     L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AIANAPL----HLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPDYEQL-----KDNYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|149190929|ref|ZP_01869192.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii
           AK1]
 gi|148835284|gb|EDL52258.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii
           AK1]
          Length = 763

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/790 (24%), Positives = 317/790 (40%), Gaps = 69/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   S + +++  ++  A  GL +VS   V  + +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRNGRKESIDLEKIHRVIAWAAEGLNNVSVSQVELKAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++                      ++  + +E 
Sbjct: 64  KSAADLISEDAPDYQYLAARLAIFHLRKKAYGQYEPPAL-----------FDHVSKMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G     L E     +L  L + + + RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDAHLLEDYTKSELDELDSYIDHTRDHDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +V+  L L+ N G +  R   M+    +  L   R+ Q   
Sbjct: 293 SQGGVRGGAATVFYPMWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYARLVQGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE             + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFERLYVKYE----NDPSIKKETVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D L       VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAINELDDLKDLSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I +H + ASVELA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANNLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTY----K 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              +L  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 585 NDVDLVCDEPLHYDWDALRSEIMEFGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPDFANLKE-----NYELLWNIGNNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKS 914
           +R     ++S
Sbjct: 734 TRDGAKDDQS 743


>gi|121635005|ref|YP_975250.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis FAM18]
 gi|120866711|emb|CAM10463.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           FAM18]
 gi|325132506|gb|EGC55199.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M6190]
          Length = 759

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/796 (24%), Positives = 324/796 (40%), Gaps = 71/796 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQ+ S N  Y          S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKGV 919
            +R      ++ ++  
Sbjct: 735 NTRDGADDTQADIQDD 750


>gi|326783874|ref|YP_004324268.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
 gi|310003886|gb|ADO98281.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
          Length = 766

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/830 (23%), Positives = 347/830 (41%), Gaps = 91/830 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G +   + +++  +VE AC GL  VS+  V  ++    YDG++ ++++  L+ 
Sbjct: 5   IKVVKRAGHIEPLDLEKMHKMVELACDGLAGVSASQVEIQSGIQFYDGMTTAEIQGILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI+ + PNY  V AR LL  LR+ +   +++ P                 R +++G
Sbjct: 65  SASDLIDLDAPNYQYVAARLLLFGLRKNLYGRIHELPTLLDQ----------IKRGVDKG 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
           +    +       ++  L   + +ERD+ F Y GL+ + D+Y       G+  E PQ  +
Sbjct: 115 IYDGDILNKYTKSEIEDLDKIIDHERDYLFTYAGLRQVVDKYLVQDRSTGALYETPQFMY 174

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +AM +        +      +YN +S       TP +    T   Q +SC L  V D 
Sbjct: 175 LLIAMTIFAEYPPENRIDYVTRYYNAISRHKINIPTPIMGGVRTPIRQFASCVLVDVDDT 234

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I G   +  GV+PFLK    T     
Sbjct: 235 LDSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCCT 294

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R  ++   
Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIEDKEI 354

Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           TLFSP    +L + +G  +F+  Y  YE      E    RK+ A  L   +L    ETG 
Sbjct: 355 TLFSPHSCPNLFESFGTPDFDELYCRYE----LDESIPKRKVRAQELIMNLLKERAETGR 410

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAH 610
            +I   D CN  S  +    V  SNLC EITL +           E A+C L +IN+   
Sbjct: 411 IYIMNIDHCNDHSSFKDK--VSMSNLCQEITLPTEPLQHIDAIDGEIALCILSAINVGKL 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   ++L      +VR L+ +ID   + ++ A+ +    R++G+G +G    L   
Sbjct: 469 TR-----LEELEDLCDLSVRSLEELIDYQDYPVKAAELATLGRRSLGVGYIGLAHYLAKH 523

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y S +A +   +  E   ++ + +S +LA+E+G  + F  + +  G+ PID+     
Sbjct: 524 GWKYDSQDAWDAVHKLTESFQYYLLKSSNQLAKEKGCCTDFFSTKYSDGILPIDTYKRDV 583

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +   ++ +    +  W+ L+  +   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 584 DEITKVGL----KHDWESLRASIVEHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 639

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    V     +        +  ++ D++ +DG                     
Sbjct: 640 IKKSKKGPLKQVVPSYGHL-----KNNYTLLWDMEGNDG--------------------- 673

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 I+  +  QK+ DQA S N          +E     +     + +  G KT+YY 
Sbjct: 674 -----YIKVVAVMQKFFDQAISGNWSYNPTQYPDNEVPISVMAQDLLKTYKYGWKTSYY- 727

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                    ++T       ++ V             + +  + + EC+ C
Sbjct: 728 ---------QNTYDMKSDDVDDV----EEVKPQLEKLFTELSEEQECDSC 764


>gi|218768315|ref|YP_002342827.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis Z2491]
 gi|121052323|emb|CAM08653.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           Z2491]
 gi|319410560|emb|CBY90928.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Neisseria meningitidis WUE 2594]
          Length = 759

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|205353393|ref|YP_002227194.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273174|emb|CAR38136.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628484|gb|EGE34827.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 761

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTDEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W +L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 -DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
            +    ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNEGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|77360361|ref|YP_339936.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875272|emb|CAI86493.1| ribonucleoside diphosphate reductase 1, alpha subunit
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 760

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/797 (24%), Positives = 315/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  ++AR  +  LR++                      ++  + + +
Sbjct: 64  KAAADQISKESPDYQYLSARLAVFHLRKKAYGQFEPPRL-----------FDHVTKMVGD 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 L     + +L  L   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 KRYDAHLLVDYTEQELDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAASLFADYPRDTRIAYIKRFYDAISLFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+HI        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ ++  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EF+  Y  YE+     E    ++I A+ L+         
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       +  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLDNVNDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LDN++D   + +  AK +    R +G+G++ +   L    
Sbjct: 469 LGAIESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P D+     +
Sbjct: 529 KRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L WD L+  +K  GMRNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 KI----CDEPLHLDWDALRASIKEHGMRNSTVSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYERL-----KDNYELLWDIPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D           K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPGKFEGGRVPMKVLLKDLLSAYKLGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  ++ T    D
Sbjct: 734 TRDGASDAQEDTPDLED 750


>gi|78484808|ref|YP_390733.1| ribonucleotide-diphosphate reductase subunit alpha [Thiomicrospira
           crunogena XCL-2]
 gi|78363094|gb|ABB41059.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Thiomicrospira crunogena XCL-2]
          Length = 760

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/792 (22%), Positives = 313/792 (39%), Gaps = 74/792 (9%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + +   +G     + +++  ++  A  GL++VS   V   ++   YDG+  SD+   +
Sbjct: 4   ETMNVAKRNGETEPLDLEKIHRVITWAAEGLENVSVSEVELRSHIQFYDGMKTSDIHETI 63

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI +  P+Y  + AR  +  LR++                      E+  + + 
Sbjct: 64  IKSAADLISESAPDYQHLAARLAIFHLRKKAFDRFTPPTL-----------FEHVNKMVR 112

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
             +    + +     +   L N ++++RD  F Y  ++ L  +Y     + G   E PQ 
Sbjct: 113 NRLYDPQIQDDYTKAEFDELDNYIQHDRDMNFSYAAVKQLEGKYLVQNRVTGKIYESPQF 172

Query: 320 FFMRVAMGLALKE-------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            +M + M L             +      FY+  S+F     TP +    T   Q SSC 
Sbjct: 173 IYMLIPMSLFAHYPNDAEPGKTRLDYVKRFYDAASNFKLSLPTPIMSGVRTPTRQFSSCV 232

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L    D L  I               G+G +   +R LG+ I G      G+IPF+K   
Sbjct: 233 LIECGDSLDSINATSSSIVKYVSQRAGIGVNVGQIRALGSEIRGGEAYHTGMIPFIKHFQ 292

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
               + +QGG R GA   +   WH++VE  + L+ N G +  R   ++    +  L  +R
Sbjct: 293 TAVKSCSQGGVRGGAATLFFPIWHLEVESLIVLKNNRGVEENRARHLDYGVQVNKLMYQR 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           + +    TLFSP +V  L+D +    +EFE  Y+ YE      +    + + AV L+ ++
Sbjct: 353 MIEGGNITLFSPSDVPGLYDAFFEDQEEFERLYKIYEADDTIRK----KTMKAVDLFTQV 408

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
                +TG  +I   D  N  S        +H SNLC EITL +    +     G I L 
Sbjct: 409 AQERAQTGRIYIQNVDHSNTHSSFDPKKAPIHQSNLCLEITLPTHPLNSVDDPEGEIALC 468

Query: 609 A---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                      D D+L       VR LD+++D   + +E A+K++   R +G+G+     
Sbjct: 469 TLSAFNLGALEDLDELDELSDLIVRALDSLLDYQDYPVEAARKASMGRRTLGVGVTNLAY 528

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L   H+ Y+   A  +  ++ E I ++ + AS+ L++E G    F+ + + QG+ PID+
Sbjct: 529 YLAKNHVKYSDGSANNLVHKAFEAIQYYLLKASLNLSKEYGKCDFFEDTKYAQGILPIDT 588

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +              W+ L+  ++  G+RNS   A+ P  T + I   +  I+P 
Sbjct: 589 YKKELDE----FCTEPLHYDWETLRSEIQKHGLRNSTMTALMPCETSSQITNSTNGIEPP 644

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + VK++  G    V         +       ++  +  + G +              
Sbjct: 645 RGYVSVKASKDGILKQVVPGF-----KEFRDQYELLWQIPDNKGYLQ------------- 686

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLK 898
                             QK++DQA S N   D    +        +      A+  GLK
Sbjct: 687 -------------LVGIMQKFVDQAISANTNYDPAKFEDGRVPIKLVLQDLLYAYKAGLK 733

Query: 899 TTYYLRSRSATS 910
           T YY  +R    
Sbjct: 734 TLYYHNTRDGAD 745



 Score = 37.9 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69
            + + V KRNG     D  KI R I     A EG        V+
Sbjct: 2  STETMNVAKRNGETEPLDLEKIHRVIT---WAAEGLENVSVSEVE 43


>gi|322832010|ref|YP_004212037.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp.
           Y9602]
 gi|321167211|gb|ADW72910.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp.
           Y9602]
          Length = 760

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 202/795 (25%), Positives = 322/795 (40%), Gaps = 69/795 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVIDWAAEGLQNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                M           +E 
Sbjct: 64  KAAADLISKDAPDYQYLAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLVKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  YE YE+ A   + K    + AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYEKYEQDASIRKQK----VKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I+ AK+     R +G+G++ +   L    
Sbjct: 469 LGAIESLDDLEELAVLAVRALDALLDYQDYPIKAAKRGAMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ P+D+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACQWFNETTYSQGIMPVDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L WD L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----CDEPLHLDWDTLRENIKTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N           +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPSRFPNSKVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGV 919
           +R      +  +K  
Sbjct: 734 TRDGADDVQEDMKAD 748


>gi|323497714|ref|ZP_08102729.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           sinaloensis DSM 21326]
 gi|323317190|gb|EGA70186.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio
           sinaloensis DSM 21326]
          Length = 760

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/797 (24%), Positives = 320/797 (40%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   + + +++  ++  A  GL +VS   V    +   YDG++ +D+   +I
Sbjct: 4   QLTVTKRNGRKETIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++              +E   LY ++  + I+ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVAKLIDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L + RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPQETRLSYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSVKKETVKAIEMFSILMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L         WD L++ + T G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCEEALHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTK-----YKDNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +K  ++  D
Sbjct: 734 TRDGASDDQKDAVQPQD 750


>gi|254670479|emb|CBA06178.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria
           meningitidis alpha153]
          Length = 759

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQ+ S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|326784149|ref|YP_004324542.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
 gi|310004881|gb|ADO99272.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
          Length = 774

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/835 (24%), Positives = 336/835 (40%), Gaps = 93/835 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +   DG++   N +++  +VEEAC GL  VS+  V   +    YDG+S  +++  LI
Sbjct: 6   TINVEKRDGSIEPLNLEKMHKMVEEACEGLSGVSASQVEMNSGIQFYDGISTDNIQEILI 65

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI    PNY  V +R L+  LR++V        +      M   Y          
Sbjct: 66  RSASDLISLDNPNYQYVASRLLMFSLRKQVFN------KSVWQDGMPTPYDVALYNVTVN 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
            V    L +   D D   L N + + RD+ F Y GL+ + D+Y      +    E PQ  
Sbjct: 120 KVYDEELLDKYSDEDWAKLNNYIDHGRDYLFSYAGLRQVVDKYLVQDRSSNEVFETPQYM 179

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +AM L      T++      +YN +S       TP +    T   Q +SC L    D
Sbjct: 180 YLFIAMTLFADYPATQRLDYVRRYYNAISKHKINIPTPIMAGVRTPLRQFASCVLIDSDD 239

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ + I G      GV+PFLK    T    
Sbjct: 240 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVAHTGVVPFLKKFESTVRCC 299

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R  +N  
Sbjct: 300 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIKNED 359

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            TLFSP +V  L+D +G + F+  Y +YE           + I A  L+  +L    ETG
Sbjct: 360 ITLFSPHDVPGLYDDFGTDAFDARYVDYESDQSIPR----KTIGAQELFLSLLKERAETG 415

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S  +    V+ SNLC EITL +          E A+C L ++N+   
Sbjct: 416 RLYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLQHIDGDGEIALCILSAVNVGKL 473

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 + D +      AVR L+ +ID   + +  A+KS    R++G+G +G    L   
Sbjct: 474 -----KNLDDMEELCDLAVRGLEELIDYQNYPVNAAEKSTKNRRSLGVGFIGLAHYLARN 528

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y  P A ++  +  E   ++ + +S ELA+E+GA   +  + +  G+ PID+     
Sbjct: 529 GEHYDDPGAWKLVHKLAESFQYYLLKSSNELAKEKGACGYYHRTKYSDGILPIDTYKREV 588

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +   ++ +       WD L+  +K  G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 589 DEICQVEL----SHDWDSLRADIKEFGLRHSTLSAQMPSESSSVVSNETNGIEPPRAYLS 644

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    V                                      LK  +   +E
Sbjct: 645 IKKSKKGPLKQVVPQFTT--------------------------------LKNNYTLLWE 672

Query: 851 I-DPMWLIESASRRQKWIDQAQSLNL-----YLDEPSG------KKLDFIYRQAWLMGLK 898
           + D    I   S  QK+ DQA S N         + +         L   Y+  W    K
Sbjct: 673 MKDNTGYINVVSVMQKFFDQAISGNWSYNPENYPDNNVPVSVMAGDLLNTYKYGW----K 728

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           T+YY          ++T        N     +   S   L      T +  C+ C
Sbjct: 729 TSYY----------QNTYD-SKTDPNDEAPQEEEKSVEDLLQEILNTQEEACDSC 772


>gi|261340637|ref|ZP_05968495.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317050|gb|EFC55988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 761

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 198/782 (25%), Positives = 321/782 (41%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVKM-VEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRDTRLEYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     E    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKD----ESIRKQRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPIDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D + ++    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 586 DLDGI-VSEPLHLDWEGLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V      + +     +  ++ ++  +DG +                    
Sbjct: 645 KASKDGVLRQVVP----DYETLG-NNYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|163803512|ref|ZP_02197382.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           AND4]
 gi|159172688|gb|EDP57539.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           AND4]
          Length = 760

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 190/797 (23%), Positives = 315/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVARLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L+++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLEHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +    L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +   L+D +    +EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDAPGLYDAFFENQEEFERLYVKYE----NDPSVKKETVKAIEMFTLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   +    + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D         VR LD ++D   + +  A KS    R +G+G++ F   L    
Sbjct: 469 LGAIKSLDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASV LA+E+G    F  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVMLAKEQGKCPLFDETNYAKGLLPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      W  L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LICDEKLHYDWGTLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              D  ++ ++  ++G +                    
Sbjct: 645 KASKDGILKQVVPDFAEL-----KNDYELLWNIGSNEGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSGYDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A   +K  ++  D
Sbjct: 734 TRDGAKDDQKDAVQPQD 750


>gi|161870165|ref|YP_001599335.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis 053442]
 gi|161595718|gb|ABX73378.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis
           053442]
          Length = 759

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGNLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AV----CNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQ+ S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|16761203|ref|NP_456820.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29141102|ref|NP_804444.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213161594|ref|ZP_03347304.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424146|ref|ZP_03357024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213612728|ref|ZP_03370554.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213646445|ref|ZP_03376498.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|25285839|pir||AC0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503502|emb|CAD07509.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136728|gb|AAO68293.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 761

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRV--AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V   +        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|251780295|ref|ZP_04823215.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084610|gb|EES50500.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 741

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 239/790 (30%), Positives = 375/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           L+ + + A  G++D        +  K +     DG+  +D+  +LI  S  L    EPN+
Sbjct: 2   LKKLCDLAIEGIKDNDGMYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDIEPNW 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               +   + +L  +V         K     +   Y E+     E  +    + E+    
Sbjct: 62  QYAASTIYIYELYDKVRKNRNLDINK----NLYDNYYEFIKELTERNLYGEYILENYSKE 117

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--T 333
           D++ L  ++K ERDF F Y G++++  RY +   N   IE+PQ  FM +AM LA+ E   
Sbjct: 118 DVLELEKEIKPERDFLFNYSGIELVAKRYLVQDFNRKVIELPQQMFMGIAMHLAIPEVKE 177

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FYN+LS      +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL- 510
            WH D+ EFL +R N GDDR++ HD+      PDLF K   +N    W +  P E+ +  
Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTK 357

Query: 511 ----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                D YG+E+E  Y          +    R I    L R ++    ETG P+  F+D 
Sbjct: 358 GYSLEDFYGEEWEAKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDS 413

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+                        +  VCNL 
Sbjct: 414 ANKMNPNKHNGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLS 473

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L         + D+L   + T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 474 SLVLGNIDVL---NDDELEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRGIGLGTSGY 530

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I +   +     D+  E I++++I AS+ L++E+G Y  F+GS WD G    
Sbjct: 531 HHMLANNKIHWTEEKHRIFVDKVYERINYYSIKASMNLSKEKGKYELFEGSDWDNG---- 586

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     +   +   +   W +LK+ VK+ GMRN   +A+AP  + A I G S+ ID
Sbjct: 587 ----------NYFELRDYNDEKWIDLKESVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     Y++             L                                +D   
Sbjct: 637 PIMARFYLEEKKGSIIPKTAPNL-------------------------------SEDNYW 665

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + TA+ ++  W +E    RQ+ IDQ QS NLY+  + + +++  +Y +A   G+K+ YY
Sbjct: 666 YYNTAYNLEQGWCVEMNGVRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725

Query: 903 LRSRSATSVE 912
           +RS+S    E
Sbjct: 726 VRSKSLEVTE 735


>gi|15677158|ref|NP_274311.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           meningitidis MC58]
 gi|7226531|gb|AAF41667.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis MC58]
 gi|316984081|gb|EFV63059.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis H44/76]
 gi|325134465|gb|EGC57110.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M13399]
 gi|325140482|gb|EGC63003.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis CU385]
 gi|325205933|gb|ADZ01386.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M04-240196]
          Length = 759

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                       ++  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQ+ S N   D       + S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|240016385|ref|ZP_04722925.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA6140]
 gi|240113128|ref|ZP_04727618.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae MS11]
 gi|240118182|ref|ZP_04732244.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID1]
 gi|254493924|ref|ZP_05107095.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae 1291]
 gi|268599211|ref|ZP_06133378.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae MS11]
 gi|268603897|ref|ZP_06138064.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID1]
 gi|226512964|gb|EEH62309.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae 1291]
 gi|268583342|gb|EEZ48018.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae MS11]
 gi|268588028|gb|EEZ52704.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID1]
          Length = 759

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                        +  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YNHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKEVRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|325144566|gb|EGC66865.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           meningitidis M01-240013]
          Length = 764

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/792 (24%), Positives = 322/792 (40%), Gaps = 71/792 (8%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
            +        LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+ 
Sbjct: 2   EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIR 61

Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             D+   +I ++  LI ++ P+Y  + AR  +  LR+                       
Sbjct: 62  TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311
           ++  +  + G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +  
Sbjct: 111 DHVKKLTDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170

Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              E PQ  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q S
Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +RGL + I G   +  G IPF K
Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +      + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L 
Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             R+ +    TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+
Sbjct: 351 YTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLF 406

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             ++     TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I
Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEI 466

Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            L              D+L       VR LD ++D   + +E A+ S    R++G+G++ 
Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVIN 526

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  P
Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V                                    + LK
Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670

Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWL 894
             + T +++      ++     QK++DQ+ S N   D       + S K++      A+ 
Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYK 730

Query: 895 MGLKTTYYLRSR 906
            G+KT YY  +R
Sbjct: 731 YGVKTLYYHNTR 742


>gi|198243793|ref|YP_002216346.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197938309|gb|ACH75642.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 780

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/791 (24%), Positives = 317/791 (40%), Gaps = 71/791 (8%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           + +  +   L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  
Sbjct: 15  QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74

Query: 196 SDLETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           SD+   +I ++  LI ++  +Y  + AR  +  LR++                       
Sbjct: 75  SDIHETIIKAAADLISRDASDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312
           +  + +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G 
Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183

Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E  Q  ++ VA  L        +      FY+ +S+F     TP +    T   Q SS
Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                 + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  
Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+ 
Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            M+     TG  +I   D CN  SP    V  V  SNLC EI L +          G I 
Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479

Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           L              D+L      AVR LD ++D   + I  AK+     R +G+G++ F
Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PI
Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +      +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+
Sbjct: 600 DTYKKDLDAI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + +K++  G    V                                    + LK 
Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683

Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
            +   +E+      ++     QK+IDQ+ S N   D       +   ++L      A+  
Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743

Query: 896 GLKTTYYLRSR 906
           G+KT YY  +R
Sbjct: 744 GVKTLYYQNTR 754


>gi|161502571|ref|YP_001569683.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863918|gb|ABX20541.1| hypothetical protein SARI_00615 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 761

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/783 (25%), Positives = 313/783 (39%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYRHVVKM-VEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + +GV PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEQGACPWFNETTYAKGVLPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AIA----NEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|85711600|ref|ZP_01042657.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina
           baltica OS145]
 gi|85694460|gb|EAQ32401.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina
           baltica OS145]
          Length = 777

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 184/825 (22%), Positives = 316/825 (38%), Gaps = 71/825 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            +L +    G     N  ++  ++  A  GL +VS+  V  +++   YDG+   D+   +
Sbjct: 3   EQLFVTKRSGQREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETI 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI +E P+Y  + AR  +  LR+                       ++  + ++
Sbjct: 63  IKAAADLISEEAPDYQYMAARLAIFHLRKRAYGKFEPPRL-----------YDHVKKMVD 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           E      L E   + +   +   + + RD  F Y  ++ L ++Y     + G   E  Q 
Sbjct: 112 EKRYDAHLLEDFSEQEFDQMDEIIDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQF 171

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     ++ +      FY+  S+F     TP +    T   Q SSC L    
Sbjct: 172 LYILVAACLFANYPKSTRMDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIETG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I        G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH+++E  L L+ N G +  R   ++       L  +R+ ++ 
Sbjct: 292 CSQGGVRGGAATLFYPLWHLEIENLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLVKDD 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +    +EFE  Y  YE      E    ++I A+ L+   +    
Sbjct: 352 FITLFSPSDVPGLYDAFFEDQEEFERLYVQYE----NDENIRKKRIKAIELFSLFMQERA 407

Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  ++   D CN  SP       V  SNLC EI L +          G I L      
Sbjct: 408 STGRIYVQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSHVNDEEGEIALCTLSAF 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                            AVR LD+++D   + +  A  +    R +G+G++ F   L   
Sbjct: 468 NLGKIESLSDFEELADLAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINFAYYLAKH 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +   + E I F+ + AS+ELA+E+G    F  + + QG+ P D+     
Sbjct: 528 GVKYSDGSANGLVHRTFEAIQFYLMKASMELAKEKGKCPKFNETTYSQGILPTDTYKKDL 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +     L W++L+K ++  GMRNS   A+ P+ T + I   +  I+P    + 
Sbjct: 588 DAFCSEPL----HLDWEQLRKDIQEHGMRNSTLSALMPSETSSQISNATNGIEPPRGFVS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK++  G    V     N        +  ++  +  + G +                   
Sbjct: 644 VKASKDGVTKQVVPDYENL-----KNNYELLWQIPDNKGYLQ------------------ 680

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY- 902
                        QK++DQ  S N           +   K+L      A+ MG+KT YY 
Sbjct: 681 --------LVGIMQKFVDQTISANTNYDPGKFNGAKVPMKQLLQDLLTAYKMGVKTLYYH 732

Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             R  +A +    + +    +  +    +            +C  
Sbjct: 733 NTRDGAADNQSDISAEQKRQRKQSDRPAEVVIEEDDDCAGGACKI 777


>gi|71892251|ref|YP_277985.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796357|gb|AAZ41108.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 760

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/797 (24%), Positives = 322/797 (40%), Gaps = 69/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +G     N  ++  ++  A  GL+ VS   V   ++   Y+G+  SD++  +I
Sbjct: 4   TLLVTKRNGHHEPINLDKIHRVINWAAKGLEQVSVSQVELRSHIQFYNGIKTSDIQETII 63

Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI E+EP+Y  + AR  +  LR++                   LY     R I+ 
Sbjct: 64  KAAADLISEEEPDYQYLAARLAVFHLRKKAYGQFEPP----------KLYNHVL-RLIKI 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDQHLLDDYNAEEFNQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++  A  L     +  +     +FY+ +S+F    +TP +    T   Q SSC L    D
Sbjct: 173 YILTAACLFSKYPKKTRMHYIQQFYDAISTFKISLATPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSSIVKYVAQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH+++E  L L+ N G D  R   ++    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLIEGKY 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     EFE  Y  YE   +       RKI A+ L+  M+     
Sbjct: 353 ITLFSPSDVPGLYEAFFNNQNEFEHLYNIYENDHNIR----HRKIKAIELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  S        V  SNLC EITL +        + G I L       
Sbjct: 409 TGRIYIQHTDHCNTHSAFDSIAAPVRQSNLCLEITLPTKPLNNINDHNGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             N  + D L+      VR LD ++D   + I  A++S    R++G+G++ +   L    
Sbjct: 469 LGNIENLDDLSELSILIVRALDALLDYQHYPIPAAQRSAVRRRSLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I +H + AS  LAQE+G+   F  + + +G+ PID+      
Sbjct: 529 VRYSDGSANKLTHRTFEAIQYHLLRASNNLAQEKGSCEWFNDTSYSKGILPIDTYKTDLN 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L+ ++K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 S----FINEPLHYNWEDLRVKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++ +G    V    +         D  ++  +  + G +                    
Sbjct: 645 KTSKNGILRQVVPEFIKLKS-----DYELLWQIPDNRGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N          ++   K+L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISTNTNYDPSRFPENKVPMKQLLSDLLYAYRLGIKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDG 921
           +R      + TL     
Sbjct: 734 TRDGAQDVQKTLPHNQS 750


>gi|33152745|ref|NP_874098.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           ducreyi 35000HP]
 gi|33148969|gb|AAP96487.1| ribonucleoside-diphosphate reductase, alpha chain [Haemophilus
           ducreyi 35000HP]
          Length = 756

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/798 (23%), Positives = 317/798 (39%), Gaps = 71/798 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             +L +   +G     + +++  ++  A  GL +VS   V    +   Y G+  SD+   
Sbjct: 2   QSQLMVTKRNGQQEPLDLEKIHRVITWAAEGLANVSVSQVELSAHIQFYQGIRTSDIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI KE P+Y  + AR  +  LR++   T Y                E+  + +
Sbjct: 62  IIKAAADLISKETPDYQYLAARLAVFHLRKKAYGTFYPPHL-----------FEHIQKLV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
           + G    LL +   + +   +   L +ERD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 KLGKYDNLLLKQYSEEEWDIMNGFLVHERDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L   
Sbjct: 171 FLYILVAACLFSSYPKATRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSSAVIKYVSQRAGIGINAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++VE  + L+ N G +  R   M+    I  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPIWHLEVESLVVLKNNRGVEDNRCRHMDYGVQINKLIYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           +  TLFSP +V  L++ +    ++FE+ Y  YE+     +    + I A+ L+  ++   
Sbjct: 351 SDITLFSPSDVPGLYEAFFADQEKFELLYLQYEQDPSIRK----KSIKAIELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             TG  +I   D  N  SP       +  SNLC EI L +          G I L     
Sbjct: 407 ASTGRIYIHNVDHSNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNINDEQGEIALCTLSA 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+L      AVR LD ++D   + ++ A+K     R++G+G++ +   L  
Sbjct: 467 FNLGTLQNLDELEPLADLAVRALDALLDYQNYPVKAAEKGAIARRSLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+   A ++   + E + ++ + AS+ LA+E G    F  + + +G+ PIDS    
Sbjct: 527 HGVRYSDGSANDLTHRTFEAVQYYLLKASMNLAKELGPCKGFNETTYAKGILPIDSYKKD 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +          S   W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    +
Sbjct: 587 IDQ----LTQEPSHYDWEALRADIKQFGLRNSTLTALMPSETSSQISNATNGIEPPRGYV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K++  G    V                                    + LK  +   +
Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------ETLKDQYELLW 670

Query: 850 EIDPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTY 901
           +I  M   +      QK++DQA S N          D+   K L      A+  GLKT Y
Sbjct: 671 DIPNMDGYLHLVGIMQKFVDQAISANTNYDPKRFEDDKVPMKILLKDLLTAYKYGLKTLY 730

Query: 902 YLRSRSATSVEKSTLKGV 919
           Y  +R      +  L   
Sbjct: 731 YQNTRDGAEDSQEDLDAN 748



 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
            + V KRNG     D  KI R I  A      V       S  +Q      T      +
Sbjct: 3  SQLMVTKRNGQQEPLDLEKIHRVITWAAEGLANVSVSQVELSAHIQFYQGIRTSDIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|48478313|ref|YP_024019.1| ribonucleotide-diphosphate reductase subunit alpha [Picrophilus
           torridus DSM 9790]
 gi|48430961|gb|AAT43826.1| ribonucleoside-diphosphate reductase alpha chain [Picrophilus
           torridus DSM 9790]
          Length = 773

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 233/929 (25%), Positives = 377/929 (40%), Gaps = 179/929 (19%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KI+ AI KA ++V+           +    LT+  +  LL+   S 
Sbjct: 8   VIKRDGSRVPFDKEKITMAIYKAMLSVKFGSM-------EDASKLTDAVIDELLK---SD 57

Query: 91  LIVHIEDIQDQVECSLMQS-----GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
               +E IQD VE  LM           + + Y++YRE+R  +R  +        +   L
Sbjct: 58  EEPTVERIQDTVEKVLMTKKINNRDFTAVAKSYIIYREKRKTIREEKELIGVKDDLKLTL 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +                 V EA    +D   KI+  ET + M+  +            
Sbjct: 118 NAIK----------------VLEARYLFKDQDGKII--ETPRQMFHRV------------ 147

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  L   E  Y                                   Y +Y   Y    V 
Sbjct: 148 AVHLAIIEGLYDY-------------------------------RRYQKYNEIYQNGTVY 176

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
             L    +   +L    ++LK E +    +            HIN               
Sbjct: 177 TSLTRTQI--DELKRAFDELKAEGELTGSFEDFLDFIKTKRNHINE-------------- 220

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                          +F +++S+  F+ ++PTL N+G    QLS+CF+  V D +  IF 
Sbjct: 221 ------------YIEKFEDVMSNLKFVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFD 268

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           AL+  A + K  GG G  ++ +R     +  T G + G + F+++ + T   + QGGKR+
Sbjct: 269 ALKYTAEIHKSGGGTGFSFSRLRAKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGGKRR 328

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA    L   H D+ +F+    +   + +   + N +  + D F +++  +    L +P 
Sbjct: 329 GANMGILRYDHPDIMDFI---TSKDSENKVLSNFNISVAVEDEFFEKLDNDDYIELKNPR 385

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           +                            KV  +I A  +W  ++   ++TG P + F D
Sbjct: 386 D---------------------------GKVVNRIKASTIWNTIINQAWKTGDPGMIFLD 418

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N ++P +++G + S+N C E  L         CNLGSINL     + +FD+D    TI
Sbjct: 419 EINKKNPVKNIGYIESTNPCGEQPLMPY----ESCNLGSINLSKFVVDGKFDFDAYKETI 474

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             A R LDNV+D N   ++K K+     R IGLGLMGF   L +L IPY S EA+EI + 
Sbjct: 475 DIATRFLDNVVDANKFPVDKIKEMTRKTRKIGLGLMGFADMLIMLGIPYNSNEALEIGER 534

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M+F++  +   S  LA+ERG +  + GS W+                            
Sbjct: 535 IMKFLNDESHLESQRLAEERGVFPGWYGSDWE---------------------------- 566

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNS 804
               K+ +K   MRNS    IAPT TI+ I G S SI+P +   +V+  ++G +   +N 
Sbjct: 567 ----KQNIK---MRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELIEINP 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
              NEL++R+L+ + ++  +    G++ +I+ +PDD+K++  TA EIDP W +   +  Q
Sbjct: 620 LFENELRKRNLYSDDLMEKVART-GNLRDID-LPDDIKRVFVTAQEIDPDWHVLMQATFQ 677

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDG 921
           ++ D   S  + L  E +   +   YR A  +  K     R RS T       T    + 
Sbjct: 678 RYCDSGVSKTINLPYEATPDDIARSYRLAKDLHCKGITVYRDRSKTQQVLYAGTDTKKEE 737

Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
           K       +  +      +  S T D  C
Sbjct: 738 KKEKNETIELYTKLPDKYVKLSSTFDPAC 766


>gi|59801041|ref|YP_207753.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA 1090]
 gi|240013943|ref|ZP_04720856.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae DGI18]
 gi|240121512|ref|ZP_04734474.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID24-1]
 gi|240128433|ref|ZP_04741094.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268686828|ref|ZP_06153690.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|293398905|ref|ZP_06643070.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae F62]
 gi|59717936|gb|AAW89341.1| putative ribonucleotide reductase I alpha chain [Neisseria
           gonorrhoeae FA 1090]
 gi|268627112|gb|EEZ59512.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291610319|gb|EFF39429.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae F62]
          Length = 759

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                        +  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YNHVKKLTDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKEARLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|239999149|ref|ZP_04719073.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|240080504|ref|ZP_04725047.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|240115884|ref|ZP_04729946.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID18]
 gi|240123730|ref|ZP_04736686.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae PID332]
 gi|240125921|ref|ZP_04738807.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae SK-92-679]
 gi|260440301|ref|ZP_05794117.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae DGI2]
 gi|268594983|ref|ZP_06129150.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|268596638|ref|ZP_06130805.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|268601558|ref|ZP_06135725.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID18]
 gi|268682360|ref|ZP_06149222.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID332]
 gi|268684518|ref|ZP_06151380.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae SK-92-679]
 gi|291043594|ref|ZP_06569310.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2]
 gi|268548372|gb|EEZ43790.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae 35/02]
 gi|268550426|gb|EEZ45445.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae FA19]
 gi|268585689|gb|EEZ50365.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID18]
 gi|268622644|gb|EEZ55044.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae PID332]
 gi|268624802|gb|EEZ57202.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           gonorrhoeae SK-92-679]
 gi|291012057|gb|EFE04046.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2]
          Length = 759

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+   D+   +I
Sbjct: 6   DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR+                        +  +  + 
Sbjct: 66  KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YNHVKKITDA 114

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +     E PQ  
Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VAM L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 175 YVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +RGL + I G   +  G IPF K+      + 
Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L   R+ +   
Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+  ++     
Sbjct: 355 ITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I L       
Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSAFN 470

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L       VR LD ++D   + +E A+ S    R++G+G++ +   L    
Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYAYYLAKNG 530

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  PID+     +
Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  + T +++
Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674

Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N          ++ S K++      A+  G+KT YY 
Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734

Query: 904 RSR 906
            +R
Sbjct: 735 NTR 737


>gi|326784481|ref|YP_004325028.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
 gi|310004514|gb|ADO98906.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
          Length = 767

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 203/831 (24%), Positives = 334/831 (40%), Gaps = 95/831 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++K++  DG   + N +++  +VE AC GL  VS   V   +    +DG+   D++  LI
Sbjct: 9   EIKVVKRDGEQTTLNLEKVHKMVEHACEGLAGVSESAVEINSGLQFFDGIETKDIQEILI 68

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  LR+ V      K              ++    I++
Sbjct: 69  RSANDLITLENPNYQYVAARLLLFGLRKSVYNGHPDKHPIL---------KDHVENCIKK 119

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    +     + +   L   + ++RDF F Y G++ + D+Y       G   E PQ  
Sbjct: 120 GVYDGEVLAKFNEEEWEKLNGYIDHDRDFLFTYAGIRQVTDKYLVQDRSTGEIFETPQFM 179

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A+ L   +    + +   ++Y+ +S       TP +    T   Q +SC L  + D
Sbjct: 180 YMMIAVTLFQDDDKFYRLEYIKKYYDAISKHKINIPTPIMAGVRTPIRQFASCVLVDLDD 239

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF              G+G +   +RG+ + I G   +  GV+PFLK    T    
Sbjct: 240 TLDSIFSGDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKLESTVRCC 299

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  +  +F +R   N  
Sbjct: 300 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFITNGT 359

Query: 499 WTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            TLFSP +V  L+D +G   F+  Y  YE      E      ISA  L   +L    ETG
Sbjct: 360 ITLFSPHDVPGLYDAFGSDSFDELYTQYE----SDESIPKSTISAQELILDLLKERAETG 415

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             ++   D CN  S  +    V  SNLC EITL +          E A+C L +IN+   
Sbjct: 416 RIYLMNIDHCNSHSSFKDK--VSMSNLCQEITLPTDPLQHIDGNGEIALCILSAINVGKI 473

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D+L      AVR LD +ID   + ++ A++S    R++G+G +G    L   
Sbjct: 474 NK-----LDELDELCDLAVRGLDALIDYQQYPVKAAEQSTKNRRSLGIGFIGLAHYLAKN 528

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           +  Y SPEA ++  +  E   +  +++S  L+ E+G    F  + +  G+ PID+     
Sbjct: 529 NAKYESPEAYDLVHKLTERFQYALLTSSNRLSMEKGPCGYFGKTKYADGILPIDTYKKDV 588

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +       W+ L+ R+   G+RNS   A  P+ + + +   +  I+P    L 
Sbjct: 589 DEI----IPNDLSCDWEFLRGRISEYGLRNSTLSAQMPSESSSVVSNATNGIEPPRDYLS 644

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G    V                          GS          LK  +   ++
Sbjct: 645 IKKSKKGPLKQVVP----------------------SYGS----------LKNNYTLLWD 672

Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           + D    I   +  QK+ DQA S N          +E     +       +  G KT+YY
Sbjct: 673 MPDNTGYINVVAIMQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYKYGWKTSYY 732

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     ++T        +       N            T +  C+ C
Sbjct: 733 ----------QNTYDAKKDGDDVDVDNLINELL--------TTEEEVCDSC 765


>gi|238021470|ref|ZP_04601896.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147]
 gi|237868450|gb|EEP69456.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147]
          Length = 757

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/796 (24%), Positives = 313/796 (39%), Gaps = 71/796 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++   DG L   N  ++  +V  A  GL +VS   V  +++   Y+G+   D+   +I 
Sbjct: 5   MQVTKRDGRLEPINLDKIHKVVTWAAEGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI +E P+Y  + AR  +  LR+            A   +M  L           G
Sbjct: 65  SAADLISEETPDYQYLAARLAIFHLRKIAYGEYAPPHLFAHVQKMVAL-----------G 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L +   + +   +   + +ERD  F Y  ++ +  +Y     +     E PQ  +
Sbjct: 114 KYDAHLLQDYTEAEYNEINGYIDHERDLTFSYAAVKQMEGKYLVQNRVTRQIFESPQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VAM L     +  +      FY+ +S F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RGLG+ I G   +  G IPF K+      + +
Sbjct: 234 LDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+V+  L L+ N G +  R   ++    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHIEVQSLLVLKNNRGVEENRIRQLDYGVQINKLMYTRLIKGGNI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP E   L++ +     EFE  Y  YE      +      ISA  L+  ++     T
Sbjct: 354 TLFSPHETPGLYEAFFADQDEFERLYTQYENDPSIRK----ETISAADLFSMLMQERAGT 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  ++   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+  +     VR LD ++D   + I  AKK+    R +G+G++ +   L    +
Sbjct: 470 GALENLDEFENLADLTVRALDALLDYQDYPIPAAKKATMNRRTLGVGVINYSYYLAKNGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A+++   + E + ++ + ASV LA+E GA   F  + + QG+ PID+     + 
Sbjct: 530 KYSDGSAIDLTHRTFEAMQYYLLKASVNLAKEYGACPLFNETTYSQGILPIDTYKADLDK 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 ----FCNEPLHYDWEALRADIVKYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVTIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            +  G    V                                      LK  + T +++ 
Sbjct: 646 QSKDGILKQVVPEFER--------------------------------LKNQYETLWQMG 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQA S N   D            ++      A+  G+KT YY  
Sbjct: 674 GNDGYLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVD 920
           +R      +S L+  D
Sbjct: 734 TRDGADDRQSDLQDDD 749


>gi|304387411|ref|ZP_07369602.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338504|gb|EFM04623.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria
           meningitidis ATCC 13091]
          Length = 764

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/792 (24%), Positives = 320/792 (40%), Gaps = 71/792 (8%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
            +        LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+ 
Sbjct: 2   EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIR 61

Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             D+   +I ++  LI ++ P+Y  + AR  +  LR+                       
Sbjct: 62  TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311
           ++  +  +     R + E     +   L   + +ERD +F Y  ++ L  +Y     +  
Sbjct: 111 DHVKKLTDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170

Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              E PQ  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q S
Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +RGL + I G   +  G IPF K
Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +      + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L 
Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             R+ +    TLFSP+EV  L++ +     EFE  Y  YE+  D  +    R I A  L+
Sbjct: 351 YTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLF 406

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             ++     TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I
Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEI 466

Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            L              D+L       VR LD ++D   + +E A+ S    R++G+G++ 
Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVIN 526

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  P
Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V                                    + LK
Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670

Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWL 894
             + T +++      ++     QK++DQ+ S N  Y          S K++      A+ 
Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYK 730

Query: 895 MGLKTTYYLRSR 906
            G+KT YY  +R
Sbjct: 731 YGVKTLYYHNTR 742


>gi|52425047|ref|YP_088184.1| ribonucleotide-diphosphate reductase subunit alpha [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307099|gb|AAU37599.1| NrdA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 765

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/795 (23%), Positives = 315/795 (39%), Gaps = 71/795 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG +   +  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I
Sbjct: 13  ALMVTKRDGQVEPLDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 72

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY E+  + +  
Sbjct: 73  KAAADLISKDAPDYQYLAARLAIFHLRKKAYGHFDPP----------RLY-EHVKKLVRL 121

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   + N L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 122 GKYDESLLSDFSREEWDEMDNFLDHSRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 181

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 182 YILVAASLFSKYPAETRLDYIHRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 241

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 242 SLDSINATSSAIIKYVSQRAGIGINAGAIRALGSPIRDGEAFHTGCIPFYKHFQTAVKSC 301

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  + L+ N G +  R   M+    I     +R+ +   
Sbjct: 302 SQGGVRGGAATVYFPMWHLEVESLVVLKNNRGVEENRARHMDYGVQINRTMYQRLIKGGD 361

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++     
Sbjct: 362 ITLFSPSDVPGLYEAFFADQAKFEELYVKYEQDPTIRK----RTVKAVDLFSLLMQERAS 417

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 418 TGRIYVQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDEDGEIALCTLSAFN 477

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D D+L +    AVR LD ++D   + +  AK+S+   RA+G+G++ +   L    
Sbjct: 478 LGKIDDLDELENLADLAVRSLDALLDYQDYPVPAAKRSSLGRRALGIGVINYAYYLAKNG 537

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS+ LA+E GA   F  + + +G+ PID+     +
Sbjct: 538 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKELGACEYFNETTYAKGILPIDTYKKDVD 597

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W++L+  +   G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 598 N----LTSEPLHYDWEQLRTEILEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHISV 653

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    ++L   +   +++
Sbjct: 654 KASKDGILKQVVPDY--------------------------------ENLSDKYELLWDM 681

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
             M   +      QK++DQ+ S N          D+   K L      A+  GLKT YY 
Sbjct: 682 PNMDGYLHLVGIMQKFVDQSISANTNYDPKRFEDDKVPMKILLKDLLTAYKYGLKTLYYQ 741

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 742 NTRDGADDAQEDLDD 756


>gi|294501622|ref|YP_003565322.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           megaterium QM B1551]
 gi|294351559|gb|ADE71888.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           megaterium QM B1551]
          Length = 747

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 237/795 (29%), Positives = 378/795 (47%), Gaps = 93/795 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFSSRTLI 210
           TL       L   +E        +   +   +  + +   + +++  +   LI ++   I
Sbjct: 4   TLKPTILHELTAYIERLKKEFTQLDFSLYEEKVIQTVTVKENMTDEKVANVLILAALERI 63

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             +EP++  V A   L +L R+               E    + +   +  + G+  + L
Sbjct: 64  SMEEPDWTYVAADVYLNELYRKAADNRG-----YDKKEKYGSFYQLIQKLTKIGIYNKQL 118

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGL 328
            ++  + ++  +A+ +  ERD  F Y+GL  L DRY     +    E+PQ  F+ +AM L
Sbjct: 119 LKTYTEEEINEIASVIIPERDRLFTYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTL 178

Query: 329 ALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
             +E    +     E Y  LSS +   +TPTL N+G  + QLSSCF+ T+ D L GI+ +
Sbjct: 179 MSQEKKENRTALVKEAYWALSSLYMTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDS 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K  GG+G     +R  G+ I G  G S G IP++K  N+TAV+V+Q G+R+G
Sbjct: 239 NTDLATLSKNGGGIGVYLGHIRSRGSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+  YL+ WH D+  FLD R N GD+R+RTHD+ T   +PDLFM++V     W LF P E
Sbjct: 299 AIAVYLDVWHKDIFSFLDARLNNGDERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHE 358

Query: 507 VSDLHDLYGKEFEIAYENYE---------RQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           V  L    G   E  Y+  E          +    E      + A+ ++++++    ETG
Sbjct: 359 VRTLM---GYSLEDFYDEEEGSGSFRTRYAECVNNEQLSRETVPAIEIFKRIMLSQLETG 415

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETA 598
            P++ ++D  N  +  +H G+++ SNLCTEIT N S+                    +  
Sbjct: 416 TPYMFYRDTVNRANQNRHEGIIYCSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFV 475

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL SINL           D L   I   VR+LDNVI++N   + +AK +N  +RA+GL
Sbjct: 476 VCNLSSINLARAVT-----EDVLERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGL 530

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G  G+   L L  I + + EAV   DE  E I++  + AS+ LA+E+GAY  FKGS ++ 
Sbjct: 531 GTFGWNHLLALKKIAWETDEAVAYCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFES 590

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G                    + +   W EL+  V++ G+RN   MA+AP ++ + I G 
Sbjct: 591 G--------------AYFETRKYTSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGS 636

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SIDP ++  Y +   +    V                                   + 
Sbjct: 637 TASIDPIFRKFYSEEKKNYKIPVTAP-------------------------------DLS 665

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                 + + + ID  W I+  ++RQ+ IDQ+ S NLY+ ++   K+L  ++  AW   L
Sbjct: 666 PATNWYYKSVYLIDQHWSIKQNAKRQRHIDQSISFNLYVQNDIRAKELLDLHMTAWKEKL 725

Query: 898 KTTYYLRSRSATSVE 912
           KTTYY+RS S+  +E
Sbjct: 726 KTTYYVRSTSSEVIE 740


>gi|156933157|ref|YP_001437073.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531411|gb|ABU76237.1| hypothetical protein ESA_00967 [Cronobacter sakazakii ATCC BAA-894]
          Length = 761

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/783 (24%), Positives = 317/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVKM-VEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L +   + +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDHHLLQDYSEDEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     E    ++I A  L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTRYEQD----ESIRKQRIKASELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIESLDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AIASEPL----HYDWESLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EQLKDQYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+ +G+KT YY 
Sbjct: 673 PGNDGYLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKLGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|237747537|ref|ZP_04578017.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter
           formigenes OXCC13]
 gi|229378899|gb|EEO28990.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter
           formigenes OXCC13]
          Length = 761

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 197/830 (23%), Positives = 312/830 (37%), Gaps = 96/830 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     +  ++  +++ A  GL +VS   V   +    YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGRKERIDLDKIHRVIDWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++                      ++  R +  G
Sbjct: 65  SAADLISGETPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------YDHVKRLVGMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDSHLLEDYSPAEFAEMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY  +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSKYPKQTRLDYIRRFYEAVSTFRVSLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINVTASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   Y   WH++VE  L L+ N G D  R   ++    +  L  KR+      
Sbjct: 294 QGGVRGGAATVYYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNRLMYKRLIAGGDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y  YE      +    + + AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQDEFERLYSLYEADGSIRK----KTVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + +  AK      R +G+G++ F   L    +
Sbjct: 470 GAIDSLDELEELATLAVRALDALLDYQDYPVLAAKNGAMGRRTLGIGVINFAYYLAKHGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +GV P+D+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFGETSYAKGVLPVDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ ++  G+RNS   A+ P+ T + I   +  I+P   ++ +K
Sbjct: 590 ----FCNEPLHYDWEALRENIRQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                 ++ DL  ++G +                     
Sbjct: 646 ASKDGILRQVVPDYEQLKDAY-----ELLWDLPDNNGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D            +L      A+ +G+KT YY  +
Sbjct: 681 ------LVGVMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLMAYKLGVKTLYYQNT 734

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
           R                         + +  S     +   D  CE   C
Sbjct: 735 R-------------------------DGAEDSQEDLQASKEDDGCESGAC 759


>gi|311278799|ref|YP_003941030.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
 gi|308747994|gb|ADO47746.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
          Length = 761

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 199/782 (25%), Positives = 313/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISREAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+          ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDTSIR----QQRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAISGLDELEDLAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGIMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      WD L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AV----VNEPLHYDWDGLREAIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|229542077|ref|ZP_04431137.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           coagulans 36D1]
 gi|229326497|gb|EEN92172.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           coagulans 36D1]
          Length = 744

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 240/782 (30%), Positives = 371/782 (47%), Gaps = 88/782 (11%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNY 216
           + + +  ++++  +GL ++ +     +  K      S  +    LI  +   I E    +
Sbjct: 8   SKEMILQLIDQMSAGL-EIETGAYKEKILKLWDQDASLVEKTDLLIKHALENIDEAGAAW 66

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               AR  L KL  E     +  P           + +   + +E+G+ +  L +     
Sbjct: 67  TFFAARIYLHKLYAEAAKNRHYDPTLKY-----GSFYDLIRQLVEKGIYSPKLLDKYTKQ 121

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKE--T 333
           ++  L   +  E+D  F Y GL  L  RY          E+PQ  +M +AM L   E   
Sbjct: 122 EIETLGRLIDPEKDLLFTYPGLYTLVTRYLASDFEKHVYELPQERWMVIAMYLMQDEQQE 181

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            + +   E Y  LS+ +   +TPTL N+G  H QLSSCF+ TV D L  I+ +  + A L
Sbjct: 182 TRMEHVKEAYWALSNLYMTVATPTLANAGKTHGQLSSCFIDTVADSLQSIYDSNTDIAQL 241

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+G     +RG G+ I G  G S GV+P++K  N+TAV+V+Q G RKGA+  YL+
Sbjct: 242 SKNGGGIGVYMGKIRGRGSAIKGFPGMSSGVVPWIKQLNNTAVSVDQLGTRKGAITVYLD 301

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            WH D+E+FLDL+ N GDDR R  D+ T   IPD FM++V +   W +F P EV ++   
Sbjct: 302 VWHRDIEDFLDLKLNNGDDRLRARDIYTGVCIPDYFMEQVEKRGDWYVFDPHEVKEVMGF 361

Query: 514 YGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             ++F  E      +          +++  RK+ A+ + ++++    ETG P++ ++D  
Sbjct: 362 ALEDFYDEEKGKGSWREKYEACIHADLRSKRKVPAIEIMKRIMRSQLETGAPFMFYRDEV 421

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------TAVCNLGSINL 607
           N ++P  H G+++ SNLCTEI  N S  E                      VCNL SINL
Sbjct: 422 NRQNPNSHKGIIYCSNLCTEIAQNQSPTELIEEWIKEENVIVKKYRSGDYVVCNLSSINL 481

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +       L   IR  VR+LD+VID+N   I++ + +N  +RA+GLG  G+   L
Sbjct: 482 GKAVPDGV-----LERLIRIQVRMLDHVIDVNTLPIKQVQITNKKYRAVGLGTFGWHHLL 536

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            L  I + +  AVE AD+  E I+++AI +S+ELA+E+G+Y +F GS W  G        
Sbjct: 537 ALEGIEWETEAAVEYADKLYENIAYYAIKSSMELAREKGSYPAFPGSKWSTG-------- 588

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                         +   W  L + VK  G+RN   MA+AP AT + I G + SIDP +Q
Sbjct: 589 ------AYFTGKGYTSERWLALAEEVKKYGLRNGYLMAVAPNATTSIIAGSTASIDPVFQ 642

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-A 846
             Y++      F V                                   +      I+  
Sbjct: 643 PYYMEEKKDYRFPVTAP-------------------------------DLDHRTYNIYRR 671

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +A+++D  W +   + RQK IDQ+ S N Y+      + L  ++ QAW  GLKTTYY+RS
Sbjct: 672 SAYKLDQRWSVRQNAARQKHIDQSISFNFYVPYNIRAQVLLDLHLQAWKSGLKTTYYVRS 731

Query: 906 RS 907
            S
Sbjct: 732 TS 733


>gi|194098863|ref|YP_002001927.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae NCCP11945]
 gi|193934153|gb|ACF29977.1| Ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           gonorrhoeae NCCP11945]
 gi|317164438|gb|ADV07979.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 764

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/792 (24%), Positives = 322/792 (40%), Gaps = 71/792 (8%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
            +        LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+ 
Sbjct: 2   EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIR 61

Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             D+   +I ++  LI ++ P+Y  + AR  +  LR+                       
Sbjct: 62  TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311
            +  +  + G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +  
Sbjct: 111 NHVKKITDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170

Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              E PQ  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q S
Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +RGL + I G   +  G IPF K
Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +      + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L 
Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             R+ +    TLFSP+EVS L++ +     EFE  Y  YE+  +  +    R I A  L+
Sbjct: 351 YTRLIKGGNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLF 406

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             ++     TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I
Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEI 466

Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            L              D+L       VR LD ++D   + +E A+ S    R++G+G++ 
Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVIN 526

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  P
Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V                                    + LK
Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670

Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWL 894
             + T +++      ++     QK++DQA S N          ++ S K++      A+ 
Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYK 730

Query: 895 MGLKTTYYLRSR 906
            G+KT YY  +R
Sbjct: 731 YGVKTLYYHNTR 742


>gi|145629253|ref|ZP_01785052.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.1-21]
 gi|144978756|gb|EDJ88479.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.1-21]
 gi|309750763|gb|ADO80747.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae R2866]
          Length = 756

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|297250514|ref|ZP_06864463.2| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838834|gb|EFH22772.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 764

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/805 (23%), Positives = 325/805 (40%), Gaps = 71/805 (8%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
            +        LK+   DG L + +  ++  +V  A  GL++VS   V  +++   Y+G+ 
Sbjct: 2   EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVAWAAEGLENVSVSQVELKSHIQFYNGIR 61

Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             D+   +I ++  LI ++ P+Y  + AR  +  LR+                       
Sbjct: 62  TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311
           ++  +    G   R + E     +   L   + +ERD +F Y  ++ L  +Y     +  
Sbjct: 111 DHVKKLTYAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170

Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              E PQ  ++ VAM L     +  +      FY+ +S+F     TP +    T   Q S
Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +RGL + I G   +  G IPF K
Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +      + +QGG R GA   +   WHI+ E  L L+ N G +  R   ++    I  L 
Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             R+ +    TLFSP+EV  L++ +     EFE  Y  YE+  +  +    R I A  L+
Sbjct: 351 YTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLF 406

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             ++     TG  +I   D CN  SP    V  VH SNLC EI L +   +      G I
Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEI 466

Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            L              D+L       VR LD ++D   + +E A+ S    R++G+G++ 
Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVIN 526

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    + Y+   A+ +   + E I ++ + AS  LA+E GA + F  +++ QG  P
Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID+     +      +       W+ L+  +   G+RNS   A+ P+ T + I   +  I
Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V                                    + LK
Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670

Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWL 894
             + T +++      ++     QK++DQA S N   D       + S K++      A+ 
Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYK 730

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGV 919
            G+KT YY  +R      ++ ++  
Sbjct: 731 YGVKTLYYHNTRDGADDTQADIQDD 755


>gi|303398730|emb|CBW46711.1| F778R [African swine fever virus Georgia 2007/1]
          Length = 778

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 214/785 (27%), Positives = 358/785 (45%), Gaps = 74/785 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++      KA   +          ++
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
           ++   K + +             + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 91  VDVVYKYKAI-----------FDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   +      K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGRVVNMKMILLTYDLLSQHVITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  KS G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLKSNGIQNYIVLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL + +      + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538
                     W LFSPD+  +LH ++           +EF+  Y  Y       E +   
Sbjct: 320 DQIHNRGDGKWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
             +A  + ++    + + G+P+I FKD  N +S   HVG + +SNLC E+T+        
Sbjct: 375 VTTAKEIIKEWFKTVVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L + + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             +G+   D            E R                 +     G+RN    A+ PT
Sbjct: 555 ASKGLLQPDLWVRCGDLVSSWEERVAQTTQGVLTPKRWSQLRLAAMQGLRNGYVTALMPT 614

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           AT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    G
Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGG 674

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  + 
Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
              W  GL T +YY         +K  ++  +   NA                       
Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771

Query: 949 ECEVC 953
           +CE C
Sbjct: 772 DCEAC 776


>gi|15896522|ref|NP_349871.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           acetobutylicum ATCC 824]
 gi|15026353|gb|AAK81211.1|AE007823_5 Ribonucleotide reductase alpha subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325510680|gb|ADZ22316.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           acetobutylicum EA 2018]
          Length = 743

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 231/787 (29%), Positives = 385/787 (48%), Gaps = 95/787 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMY----DGLSESDLETALIFSSRTLIE-KEPNY 216
           +E + +EA  G+ D  +    ++    +     +G+ E ++  ++I     L +  EP +
Sbjct: 4   VENLCKEALKGINDDENIYTKTKLINVLKHITREGMKEEEIIKSVIQVCLELTKADEPKW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  +R  +  L  EV          + + +    + ++  +  +EG+  + + E+    
Sbjct: 64  LQGASRLYVINLYNEVRKNRNI----SENEDPYKGFYDFIVKLTDEGLYGKYILENYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L + +K +RDF F Y G+++L +RY   +     +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIYELESFIKKDRDFLFTYSGIKLLSERYLIQNFERKVLELPQQMFMGIAMHLAVPEKQE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 180 NRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDTVDDSLKGIYKSLDNFANV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +KY GG+G  +  VR +GA I G  G S GV+P++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKYGGGMGVYFGKVRSMGASIRGFKGASGGVVPWVKLFNDTAIAVDQLGVRNGSVAVWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EF+ LR N GDDR++ HD+      PDLF +   ++    W +  P E+    
Sbjct: 300 AWHKDLPEFMQLRTNNGDDRKKAHDVFPGVCYPDLFWRLAEEDIDANWYMMCPHEIKLVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y +        +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDYYGEEWEKRYFDCVNDPRIDK----RMMSVKDIVRLIIKSAAETGTPFAFYRDA 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+                        +  VCNL 
Sbjct: 416 ANRMNPNKHKGMIYSSNLCTEIMQNMSAMDILEDEIIDENGDKIIVQKAKSGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SI L     N   D ++L   I T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 476 SIVLGNVDVN---DDEELQYVIETQIRAMDNVIDLNYYSVPFAEVTNKRYRGIGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + + S +  E  D   E I+++AI AS+ +A+++G Y  F+GS W+ G    
Sbjct: 533 HHMLTNNRVVWTSDDHFEFTDRVYEKINYYAIQASMNIAKDKGRYEYFEGSDWENGS--- 589

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                         +   +   W  L  ++K  GMRN   MA+AP  + A I G S+ +D
Sbjct: 590 -----------YFKLRGYNSPKWKALIAKIKKYGMRNGYIMAVAPNGSTATIAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         +   L  E    + W                           
Sbjct: 639 PVMARFWMEEKKGSITPKIAPNLSRE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ID    ++    RQ+ IDQ+QS NLY+  + + +++  +Y +A+  G+K+ YY
Sbjct: 668 FYNSAYNIDQKLCVKINGIRQRHIDQSQSFNLYITTDYTMRQIMNLYIEAYKSGVKSIYY 727

Query: 903 LRSRSAT 909
           +RS+S T
Sbjct: 728 VRSKSLT 734


>gi|261253083|ref|ZP_05945656.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio orientalis CIP 102891]
 gi|260936474|gb|EEX92463.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Vibrio orientalis CIP 102891]
          Length = 760

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/797 (24%), Positives = 319/797 (40%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   +G   S + +++  ++  A  GL +VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++                      ++  R ++ 
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVARMVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + + E     +L  L   L ++RD  F Y  ++ L  +YF    ++G   E  Q  
Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + +  + L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE             + A+ ++  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSVKKETVKAIEMFSILMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A KS    R +G+G++ +   L    
Sbjct: 469 LGAIKSLDDLEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASV LA+E+G   SF  + + +G+ PID+     +
Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLRASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               L  +      WD L++ + T G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----LVCDEQLHYDWDGLREEIVTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEFTE-----YKDNYELLWNIGSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   KKL      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +K  ++  D
Sbjct: 734 TRDGASDDQKDAVQPQD 750


>gi|187933383|ref|YP_001884519.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721536|gb|ACD22757.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 741

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 240/790 (30%), Positives = 374/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216
           L  +   A  G++D        +  K +     DG+  +D+  +LI  S  L    EPN+
Sbjct: 2   LRKLCNLAIEGIKDNDGTYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDMEPNW 61

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               +   + +L  +V        +K     +   Y E+     E+      + E+    
Sbjct: 62  QYSASTVYIYELYDKVRKNRNLDVKK----NLYDNYYEFIKELTEKNFYGEYILENYSKE 117

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--T 333
           D++ L  ++K ERDF F Y G+ ++  RY +   N S IE+PQ  FM +AM LA+ E   
Sbjct: 118 DILELEKEIKPERDFLFNYSGIDLVTKRYLVQDFNRSVIELPQQMFMGIAMHLAIPEVKE 177

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
           ++   A  FYN+LS      +TPT+ N+     QLSSCF+ TV D L GI+ +L   A +
Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EFL +R N GDDR++ HD+      PDLF K   +N    W +  P E+    
Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNAK 357

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R I    L R ++    ETG P+  F+D 
Sbjct: 358 GYSLEDFYGEEWETKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDN 413

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+                        +  VCNL 
Sbjct: 414 ANKMNPNKHKGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYNVVQNIEAGDFVVCNLS 473

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L         + ++L   + T +R +DNVID+N +++  A+ +N  +R IGLG  G+
Sbjct: 474 SLVLGNIDVL---NDEELECVVETQIRAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGY 530

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I +   +     D+  E I++++I AS+ L++E+G Y  F+GS WD G    
Sbjct: 531 HHMLANNKIHWTEEKHRTFVDKVYEKINYYSIKASMNLSKEKGKYELFEGSDWDNG---- 586

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     +   +   +   W +LK+ VK+ GMRN   +A+AP  + A I G S+ ID
Sbjct: 587 ----------NYFELRDYNDEKWIDLKQEVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     Y++             L                                +D   
Sbjct: 637 PIMARFYLEEKKGSIIPKTAPNL-------------------------------SEDNYW 665

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + TA+ ++  W +E    RQ+ IDQ QS NLY+  + + +++  +Y +A   G+K+ YY
Sbjct: 666 YYNTAYNLEQGWCVEMNGIRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725

Query: 903 LRSRSATSVE 912
           +RS+S    E
Sbjct: 726 VRSKSLEVTE 735


>gi|157371508|ref|YP_001479497.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           proteamaculans 568]
 gi|157323272|gb|ABV42369.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia
           proteamaculans 568]
          Length = 762

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/806 (23%), Positives = 317/806 (39%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A    M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLLAHVTRM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   + + + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRDTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGQD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQD----DSIRQKRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I+ A +     R +G+G++ +   L    
Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIKAAHRGAMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANALTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               +         W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 ----VICQEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              D  ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERL-----KNDYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPTRFPGGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R      +  L    G  +      
Sbjct: 734 TRDGADDIQEDLLPAKGGDDDCESGA 759


>gi|291618169|ref|YP_003520911.1| NrdA [Pantoea ananatis LMG 20103]
 gi|291153199|gb|ADD77783.1| NrdA [Pantoea ananatis LMG 20103]
 gi|327394562|dbj|BAK11984.1| ribonucleoside-diphosphate reductase 1 alpha subunit NrdA [Pantoea
           ananatis AJ13355]
          Length = 761

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 199/782 (25%), Positives = 320/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY +     ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDQVVKM-VDL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   L + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDRHLLEDYSREEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKMMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDSSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDASIAPVRQSNLCLEIALPTKPLSDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PID+     +
Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++++KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----CNEPLHLDWETLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWDMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPSRFPNGKVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|301170417|emb|CBW30023.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae 10810]
          Length = 756

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 187/794 (23%), Positives = 319/794 (40%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRI 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   +   V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|328784177|ref|XP_001121495.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Apis
           mellifera]
          Length = 610

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 190/465 (40%), Positives = 280/465 (60%), Gaps = 18/465 (3%)

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           V EFLDL+KNTG +  R  ++  A WIPDLFMKRV  N  WTL  P E   L D++G EF
Sbjct: 102 VFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEF 161

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           EI Y  YE      E +  R+I A  LW  +L    ETG P++ +KD CN +S  Q++G 
Sbjct: 162 EILYTRYEN-----EKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQNIGT 216

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           + SSNLCTE+   SS +E AVCNL SI  N+  +  N  FD+ KL    +     LD +I
Sbjct: 217 IKSSNLCTEVVQYSSPDEVAVCNLASIAVNMFVNPINQTFDFQKLLKVTKIVTCNLDKII 276

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + I +A+KSN  HR IG+G+ G   A  L+  P+ S EA ++  +  E + + A+ 
Sbjct: 277 DVNYYPIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALE 336

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS ELA+E+G Y +++GS   +G+   D   ++           T+   W  LKK++   
Sbjct: 337 ASCELAEEKGTYETYEGSPVSKGILQYDMWNVIP----------TNLWDWTILKKKIAKH 386

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RNS  +A  PTA+ A I G ++SI+P   N+Y +  +SG+F VVN  L+ +L +RDLW
Sbjct: 387 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDLTERDLW 446

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           DE M +++  ++GSI +IERIPDDLK ++ T +EI    +++ A+ R  +IDQ+QSLN++
Sbjct: 447 DEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSLNVH 506

Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
           + +P+ +KL  ++   W MGLKT  YYLR++ A +  + T+    
Sbjct: 507 MAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAANALQFTVDKSK 551



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 10/152 (6%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLE 199
             ++ ++  DG     +  ++   + + C  L    +    +       +Y G++  +L+
Sbjct: 4   KGRMYVIKRDGRKEDVHFDKITSRISKLCYNLDMDYIDPSAITFRVISGLYSGVTTVELD 63

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY--------KKPQKATHHEMQCL 251
                ++ T+  K P+YA + AR  +  L +E   +          K   K  +   +  
Sbjct: 64  NLAAETAATMTTKHPDYAILAARIAISNLHKETTKSFSVFEFLDLKKNTGKEENRARELF 123

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
           Y  +      + V    +   M   +   LA+
Sbjct: 124 YALWIPDLFMKRVLDNDIWTLMCPHESPGLAD 155


>gi|148825801|ref|YP_001290554.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittEE]
 gi|148715961|gb|ABQ98171.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittEE]
 gi|309972946|gb|ADO96147.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus
           influenzae R2846]
          Length = 756

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|206576450|ref|YP_002237362.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|288934290|ref|YP_003438349.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella
           variicola At-22]
 gi|290508493|ref|ZP_06547864.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp.
           1_1_55]
 gi|206565508|gb|ACI07284.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|288889019|gb|ADC57337.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           variicola At-22]
 gi|289777887|gb|EFD85884.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp.
           1_1_55]
          Length = 761

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/782 (25%), Positives = 319/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E+
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D + ++ +    W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 586 DLDGI-VSESLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|295706970|ref|YP_003600045.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           megaterium DSM 319]
 gi|294804629|gb|ADF41695.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           megaterium DSM 319]
          Length = 747

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 237/795 (29%), Positives = 379/795 (47%), Gaps = 93/795 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFSSRTLI 210
           TL       L   +E        +   +   +  + +   + +++  +   LI ++   I
Sbjct: 4   TLKPTILHELTAYIERLKKEFTQLDFSLYEEKVIQTVTVKENMTDEKVANVLILAALERI 63

Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
             +EP++  V A   L +L R+         +     E    + +      + G+  + L
Sbjct: 64  SMEEPDWTYVAADVYLNELYRKA-----GDNRGYDKKEKYGSFYQLIQELTKIGIYNKQL 118

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGL 328
            ++  + ++  +A+ +  ERD  F Y+GL  L DRY     +    E+PQ  F+ +AM L
Sbjct: 119 LKTYTEEEINEIASVIIPERDRLFTYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTL 178

Query: 329 ALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
             +E +  +     E Y  LSS +   +TPTL N+G  + QLSSCF+ T+ D L GI+ +
Sbjct: 179 MSQEKKESRTALVKEAYWALSSLYMTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDS 238

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + A L+K  GG+G     +R  G+ I G  G S G IP++K  N+TAV+V+Q G+R+G
Sbjct: 239 NTDLATLSKNGGGIGVYLGHIRSRGSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQG 298

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+  YL+ WH D+  FLD R N GD+R+RTHD+ T   +PDLFM++V     W LF P E
Sbjct: 299 AIAVYLDVWHKDIFSFLDARLNNGDERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHE 358

Query: 507 VSDLHDLYGKEFEIAYENYE---------RQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           V  L    G   E  Y+  E          +    E      + A+ ++++++    ETG
Sbjct: 359 VRTLM---GYSLEDFYDEEEGSGSFRTRYAECVNNEQLSRETVPAIEIFKRIMLSQLETG 415

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETA 598
            P++ ++D  N  +  +H G+++ SNLCTEIT N S+                    +  
Sbjct: 416 TPYMFYRDTVNRANQNRHEGMIYCSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFV 475

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNL SINL           D L   I   VR+LDNVI++N   + +AK +N  +RA+GL
Sbjct: 476 VCNLSSINLARAVT-----EDVLERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGL 530

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G  G+   L L  I + + EAV   DE  E I++  + AS+ LA+E+GAY  FKGS ++ 
Sbjct: 531 GTFGWNHLLALKKIAWETDEAVAYCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFES 590

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G                    + +   W EL+  V++ G+RN   MA+AP ++ + I G 
Sbjct: 591 G--------------AYFETRKYTSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGS 636

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SIDP ++  Y +   +    V                                   + 
Sbjct: 637 TASIDPIFRKFYSEEKKNYKIPVTAP-------------------------------DLS 665

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                 + + + ID  W I+  ++RQ+ IDQ+ S NLY+ ++   K+L  ++  AW   L
Sbjct: 666 PATNWYYKSVYLIDQHWSIKQNAKRQRHIDQSISFNLYVQNDIRAKELLDLHMAAWKEKL 725

Query: 898 KTTYYLRSRSATSVE 912
           KTTYY+RS S+  +E
Sbjct: 726 KTTYYVRSTSSEVIE 740


>gi|145631491|ref|ZP_01787260.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|144982921|gb|EDJ90434.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
          Length = 756

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/794 (23%), Positives = 320/794 (40%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDAQEDLDD 747


>gi|320175006|gb|EFW50121.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae CDC 74-1112]
          Length = 761

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  ++     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLIMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|9628153|ref|NP_042739.1| ribonucleotide reductase large subunit [African swine fever virus]
 gi|1172937|sp|P42491|RIR1_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|780415|gb|AAA65275.1| ribonucleotide reductase large subunit [African swine fever virus]
 gi|162849428|emb|CAN10393.1| Ribonucleotide reductase large subunit [African swine fever virus
           OURT 88/3]
 gi|291289489|emb|CBH29146.1| BA71V-F778R [African swine fever virus E75]
 gi|1097434|prf||2113434AU ribonucleotide reductase:SUBUNIT=large
          Length = 778

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 214/785 (27%), Positives = 359/785 (45%), Gaps = 74/785 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++      KA   +          ++
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
           ++   K + +             + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 91  VDVVYKYKAI-----------FDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL + +      + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538
                     W LFSPD+  +LH ++           +EF+  Y  Y       E +   
Sbjct: 320 DQIHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
             +A  + ++    + + G+P+I FKD  N +S   HVG + +SNLC E+T+        
Sbjct: 375 VTTAKEIIKEWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L + + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             +G+   D            E R                 +     G+RN    A+ PT
Sbjct: 555 ASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLRLAAMQGVRNGYLTALMPT 614

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           AT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ DLW EA+   L    G
Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGG 674

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  + 
Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
              W  GL T +YY         +K  ++  +   NA                       
Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771

Query: 949 ECEVC 953
           +CE C
Sbjct: 772 DCEAC 776


>gi|238895769|ref|YP_002920505.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae NTUH-K2044]
 gi|330000611|ref|ZP_08303754.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|238548087|dbj|BAH64438.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328537953|gb|EGF64132.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 761

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/782 (25%), Positives = 318/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E+
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDTIRK----QRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D + ++      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 586 DLDGI-VSEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|261346129|ref|ZP_05973773.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
 gi|282565782|gb|EFB71317.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
          Length = 763

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/802 (24%), Positives = 316/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL +VS  +V   +    YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGHKERIDLDKIHKVIAWAAEGLNNVSVSLVELRSQIQFYDGIRTSDIHETMI 63

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI    P+Y  + AR  +  LR++                       +  R +E 
Sbjct: 64  KAAADLITGDTPDYQYLAARLAIFNLRKKAYGQFEPPKLYT-----------HVKRLVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E   + D   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSHYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N  
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+  +  +      + AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDENIRKS----SVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  A+K +   R +G+G++ +   L    
Sbjct: 469 LGAINSLDELEELAVLAVRALDALLDYQDYPIPAAQKGSMGRRTLGVGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKRELD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 K----LTDEPLHYDWETLRKEIQQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++  +  ++G +                    
Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNNGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +    +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMNQLLKDLLLAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755


>gi|152971180|ref|YP_001336289.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956029|gb|ABR78059.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 761

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/782 (25%), Positives = 318/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E+
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D + ++      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 586 DLDGI-VSEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|119472402|ref|ZP_01614520.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales
           bacterium TW-7]
 gi|119444924|gb|EAW26222.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales
           bacterium TW-7]
          Length = 760

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/797 (24%), Positives = 313/797 (39%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++                      ++  + + +
Sbjct: 64  KAAADQISKESPDYQYLAARLAVFHLRKKAYGQFEPPRL-----------FDHVTKMVSD 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 L     + +   L   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 KRYDAHLLADYTEQEFDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAASLFADYPRETRVSYIKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+HI        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ ++  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EF+  Y  YE+     E    ++I A+ L+         
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFDTLYVKYEQD----ESIRKKRIKAIELFSVFAQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LDN++D   + +  AK +    R +G+G++ +   L    
Sbjct: 469 LGALESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P D+     +
Sbjct: 529 KRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKTDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L WD L+K ++  GMRNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 KI----CDEPLHLDWDALRKSIQEHGMRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYERL-----KDNYELLWDIPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQ  S N   D       +   K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQTISANTNYDPNKFEGGKVPMKVLLKDLLSAYKLGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +  T +  D
Sbjct: 734 TRDGASDAQDDTPEVED 750


>gi|300926339|ref|ZP_07142139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|301328724|ref|ZP_07221777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
 gi|300417616|gb|EFK00927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|300844872|gb|EFK72632.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
          Length = 761

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 316/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    +
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+ +G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKLGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|145634464|ref|ZP_01790174.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittAA]
 gi|229846891|ref|ZP_04466998.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 7P49H1]
 gi|145268444|gb|EDK08438.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittAA]
 gi|229810380|gb|EEP46099.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 7P49H1]
          Length = 756

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|326571162|gb|EGE21186.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC7]
          Length = 758

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +
Sbjct: 5   DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI  E P+Y  + AR  +  LR+            A           +     E
Sbjct: 65  IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           +G   + +       +   L + + + RD    Y  ++ +  +Y     +     E PQ 
Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            +M V M L     + ++      FY+  S+F+    TP +    T   Q SSC L    
Sbjct: 174 LYMLVGMCLFARYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I               G+G +   +R LG+ I G   +  G IPF K+      +
Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +    + FE  Y  YE   +  +    RK+ A  L+  ML    
Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L ++  +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    +KL+         VR LD ++D   + +  AKK +   R +G+G++ +   L   
Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PID+     
Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V   +     Q       ++ ++  ++G                     
Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 +      QK+IDQ+ S N   D       +   K L      A+  G+KT YY 
Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 735 NTRDGADDAQGDLDD 749


>gi|162849255|emb|CAN10144.1| Ribonucleotide reductase large subunit [African swine fever virus
           Benin 97/1]
          Length = 778

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 213/785 (27%), Positives = 358/785 (45%), Gaps = 74/785 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++      KA   +          ++
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
           ++   K + +             + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 91  VDVVYKYKAI-----------FDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL + +      + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538
                     W LFSPD+  +LH ++           +EF+  Y  Y       E +   
Sbjct: 320 DQIHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
             +A  + ++    + + G+P+I FKD  N +S   HVG + +SNLC E+ +        
Sbjct: 375 VTTAKEIIKEWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVIIPCWEGDKA 434

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L + + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             +G+   D            E R                 +     G+RN    A+ PT
Sbjct: 555 ASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLRLAAMQGVRNGYLTALMPT 614

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           AT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ DLW EA+   L    G
Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGG 674

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  + 
Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
              W  GL T +YY         +K  ++  +   NA                       
Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771

Query: 949 ECEVC 953
           +CE C
Sbjct: 772 DCEAC 776


>gi|229845067|ref|ZP_04465203.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 6P18H1]
 gi|229812039|gb|EEP47732.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 6P18H1]
          Length = 756

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 316/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|68250261|ref|YP_249373.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 86-028NP]
 gi|68058460|gb|AAX88713.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae 86-028NP]
          Length = 756

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|146312443|ref|YP_001177517.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           sp. 638]
 gi|145319319|gb|ABP61466.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Enterobacter sp. 638]
          Length = 761

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 197/782 (25%), Positives = 314/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++               +M  L           
Sbjct: 64  KAAADLISREAPDYQYMAARLAIFHLRKKAYGQFEPPALLDHVTKMVEL----------- 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDAHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        + +    FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLEYVKRFYDAVSIFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGQD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLYDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                   +L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKSLAELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----VNEPLHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK        ++ ++  +DG +                    
Sbjct: 645 KASKDGVLRQVVPDY-ELLKD----SYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|319776093|ref|YP_004138581.1| ribonucleoside-diphosphate reductase subunit alpha [Haemophilus
           influenzae F3047]
 gi|317450684|emb|CBY86904.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3047]
          Length = 756

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/794 (23%), Positives = 319/794 (40%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                   LY ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASGIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|304398197|ref|ZP_07380071.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
 gi|304354063|gb|EFM18436.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
          Length = 761

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/783 (25%), Positives = 316/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY +     ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDQVVKM-VDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   L + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH+++E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDQSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ +   L    
Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGIMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----SNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDQYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQA S N   D       +   K+L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGLMQKFIDQAISSNTNYDPSRFTNGKVPMKQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|319896902|ref|YP_004135097.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3031]
 gi|317432406|emb|CBY80761.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus
           influenzae F3031]
          Length = 756

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKQLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|315126540|ref|YP_004068543.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas sp. SM9913]
 gi|315015055|gb|ADT68393.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas sp. SM9913]
          Length = 760

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/790 (24%), Positives = 305/790 (38%), Gaps = 69/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++                      ++    +E+
Sbjct: 64  KAAADQISKESPDYQYLAARLAVFHLRKKAYGQFEPPRL-----------FDHVTNMVEQ 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 L     + +L  L   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 KRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAASLFSDYPRDTRIDYIKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ ++  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EF+  Y  YE+     E    ++I A+ L+         
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLSNVNDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LDN++D   + +  AK +    R +G+G++ +   L    
Sbjct: 469 LGAIESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +   + E I ++ + AS ELA+ERGA   F  + + QG+ P D+     +
Sbjct: 529 KRYSDGSANALTHRTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L WD L+  +K  GMRNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 KI----CDEPLHLDWDALRASIKEHGMRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYERL-----KDSYELLWDIPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ  S N   D           K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQTISANTNYDPNKYEGGRVPMKVLLKDLLGAYKLGVKTLYYHN 733

Query: 905 SRSATSVEKS 914
           +R   S  + 
Sbjct: 734 TRDGASDAQE 743


>gi|329123257|ref|ZP_08251825.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|327471466|gb|EGF16914.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 756

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|308187585|ref|YP_003931716.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
 gi|308058095|gb|ADO10267.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
          Length = 761

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/783 (25%), Positives = 316/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY +     ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDQVVKM-VDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   L + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH+++E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQD----KSIRQQRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ +   L    
Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----SNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDQYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQA S N   D       +   K+L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGLMQKFIDQAISSNTNYDPSRFANGKVPMKQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|187731504|ref|YP_001881064.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           CDC 3083-94]
 gi|187428496|gb|ACD07770.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii CDC 3083-94]
          Length = 761

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|117920414|ref|YP_869606.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           ANA-3]
 gi|117612746|gb|ABK48200.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. ANA-3]
          Length = 762

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 188/805 (23%), Positives = 331/805 (41%), Gaps = 69/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +   +I 
Sbjct: 5   MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++                      ++  + +E G
Sbjct: 65  SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                + +     +L  + + + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDMHILQDYTREELDIMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + +   +FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EFE  Y  YE+ +   +    + + AV L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       +  SNLC EI L +          G I L    A N 
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               +  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    +
Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGM 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PID+     + 
Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYKRDLDK 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +     L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 ICSEPL----HLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     +ELK    ++  ++  +  ++G +                     
Sbjct: 646 ASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   + L      A+ +G+KT YY  +
Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
           R   S +   +  ++ + +      
Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759


>gi|215275536|sp|P0C8H8|RIR1_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 778

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 213/785 (27%), Positives = 361/785 (45%), Gaps = 74/785 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++      KA   +          ++
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
           ++   K + +             + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 91  VDVVYKYKAI-----------FDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL++ +      + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538
                     W LFSPD+  +LH ++           +EF+  Y  Y       E +   
Sbjct: 320 DQIHNRGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
             +A  + +     + + G+P+I FKD  N +S   HVG + +SNLC E+T+        
Sbjct: 375 VTTAKEIIKAWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L I + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT------IGMRNSNCMAIAPT 769
             +G+   D      ++                 +K  +        G+RN    A+ PT
Sbjct: 555 ASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLRLAAIQGVRNGYLTALMPT 614

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           AT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    G
Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGG 674

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  + 
Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
              W  GL T +YY         +K  ++  +   NA                       
Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771

Query: 949 ECEVC 953
           +CE C
Sbjct: 772 DCEAC 776


>gi|270262778|ref|ZP_06191049.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
 gi|270043462|gb|EFA16555.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
          Length = 762

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/806 (23%), Positives = 318/806 (39%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A    M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLLAHVTRM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   + + + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYNSEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFANQDEFERLYTLYEKD----DSIRQKRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I+ A +     R +G+G++ +   L    
Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANSLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
               +  +      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 ----VICDEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V         +       ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKNEY-----ELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPSRFPAGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R      +  L    G  +      
Sbjct: 734 TRDGADDVQEDLLPAKGGDDDCESGA 759


>gi|109898788|ref|YP_662043.1| ribonucleotide-diphosphate reductase subunit alpha
           [Pseudoalteromonas atlantica T6c]
 gi|109701069|gb|ABG40989.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 771

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 196/811 (24%), Positives = 316/811 (38%), Gaps = 71/811 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            KL +    G   S + +++  ++  A  GL +VS   V  + +   YDG+   D+   L
Sbjct: 3   NKLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI  + P+Y  + AR  +  LR++           A    M           +E
Sbjct: 63  IRSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPALFAHVTNM-----------VE 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
                + L     + +   + + + + RD  F Y  ++ L  +Y     + G   E  Q 
Sbjct: 112 MQKYDQHLLSDYSEAEFQEMDDYIDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     +  + +    FY+  S F     TP +    T   Q SSC L    
Sbjct: 172 LYILVAACLFADYPKDSRMEYIKRFYDATSKFKISLPTPIMAGVRTPTRQFSSCVLIEAG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++ 
Sbjct: 292 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKDQ 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D +     +FE  Y  YE+     +     +I AV L+   +    
Sbjct: 352 HISLFSPSDVPGLYDAFFADQPKFEELYVKYEQDDSIRKT----QIKAVELFSLFMQERA 407

Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  ++   D CN  SP       +  SNLC EI L +   E      G I L      
Sbjct: 408 STGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLSAF 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   +  A     AVR LDN++D   + +  A  +    R +G+G++ F   L   
Sbjct: 468 NLGAIESLEDFAEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINFAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +   + E + +H + AS  LA+E+GA   F  + + QG+ PID+     
Sbjct: 528 GVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPIDTYKKDL 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       N      WD L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ 
Sbjct: 588 DKI----CNEPLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHIS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKS+  G    V       LK +      ++ DL  +DG +                   
Sbjct: 644 VKSSKDGVLKQVVPEY-ELLKDK----YELLWDLPSNDGYLQ------------------ 680

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY- 902
                        QK++DQ  S N   D       +   K L      A+ +G+KT YY 
Sbjct: 681 --------LTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLLTAYQLGVKTLYYH 732

Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
             R  +A + ++           AV   D +
Sbjct: 733 NTRDGAADTSQQELKSTQFVPQEAVVEEDDD 763


>gi|209695248|ref|YP_002263177.1| ribonucleotide-diphosphate reductase subunit alpha [Aliivibrio
           salmonicida LFI1238]
 gi|208009200|emb|CAQ79454.1| ribonucleoside-diphosphate reductase 1 alpha chain [Aliivibrio
           salmonicida LFI1238]
          Length = 758

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 196/790 (24%), Positives = 319/790 (40%), Gaps = 69/790 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           P+L +   +GT    N +++  ++  A   L +VS   V  +++   Y+G+  SD+   +
Sbjct: 3   PQLTVTKRNGTTEKINLEKIHKVITWAAENLDNVSVSQVEMKSHIQFYEGMKTSDIHETI 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI +E P+Y  + AR  +  LR++                      ++    IE
Sbjct: 63  IKAAADLISEETPDYQYLAARLSVFHLRKKAYGQFEPPTL-----------FKHVNNLIE 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQA 319
            G   + + E   + +   +   + + RD  F Y  ++ L  +YF    + G+  E  Q 
Sbjct: 112 LGKYDKHITEDYTEAEFDLMDQMIDHSRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQF 171

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     +  +      FY+  S F     TP +    T   Q SSC L    
Sbjct: 172 LYILVAACLFAKYPKDTRLDYIQRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIECD 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I        G IPF K        
Sbjct: 232 DSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKC 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGE 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  +++ +     EFE  Y  YE+            I A+ L+  ++    
Sbjct: 352 HISLFSPSDVPGMYEAFFADQVEFERLYLKYEQDTSI----KRETIKAIELFSLLMQERA 407

Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP       +  SNLC EI L +          G I L    A 
Sbjct: 408 STGRIYIQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLTHVNDEEGEIALCTLSAF 467

Query: 614 NQFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    +K   L      AVR LD ++D   + +  A KS    R +G+G++ +   L   
Sbjct: 468 NLGAIEKLEELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +  ++ E I F+ + ASV LA+E+GA  +F  + + QG+ PIDS     
Sbjct: 528 GVKYSDGSANGLTHKTFEAIQFYLLKASVNLAKEQGACPAFNETTYAQGILPIDSYKKDI 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +     L W+EL+  +KT G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 588 DNICSEEL----HLDWEELRSDIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V    +N        +  ++ ++  +DG +                   
Sbjct: 644 IKASKDGILKQVVPDYLNL-----KDNYELLWNIGSNDGYLQ------------------ 680

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                        QK++DQA S N   D       +   K L      A+ +GLKT YY 
Sbjct: 681 --------LVGIMQKFVDQAISANTNYDPNSQPNGKVPMKLLLKDLLTAYKLGLKTLYYH 732

Query: 904 RSRSATSVEK 913
            +R   S  +
Sbjct: 733 NTRDGASDSQ 742


>gi|88801049|ref|ZP_01116597.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp.
           MED297]
 gi|88776188|gb|EAR07415.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp.
           MED297]
          Length = 757

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/803 (25%), Positives = 319/803 (39%), Gaps = 84/803 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L+I   DG L     +++  +++ A  GL+ VS   V  +     YDG+S +++   L+ 
Sbjct: 3   LQIKKRDGRLEPIQLEKIHRVLQWASEGLKKVSVSEVELKARIQFYDGMSTTEIHEMLVR 62

Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI   +P+Y  + AR  +  LR++                      +   R + E 
Sbjct: 63  SAADLISDRQPDYQFMAARLAIFHLRKQAFGRFEPPHV-----------YDLVTRLVNER 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
               +L  +  + D   L   L + RD  F Y G++ L  +Y     + G   E PQ  +
Sbjct: 112 RYDPILLSAYSEADWDELNGCLDHSRDLDFAYAGVKQLQGKYLVQDRVTGRIFESPQFVY 171

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +   L        +     +FY   S+  F   TP +    T   Q SSC L    D 
Sbjct: 172 LLIGACLFSGYPAETRLTYVKKFYQAASTHRFSLPTPIMAGVRTPTRQFSSCVLIECDDT 231

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +RG+G+ I        G IPF K+      + +
Sbjct: 232 LDSINATSSSVVNYVSQRAGIGINAGRIRGIGSPIRSGEAFHTGCIPFYKLFQSAVKSCS 291

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WHI+ EE L L+ N G D  R   ++    +  L  +R+ Q++  
Sbjct: 292 QGGIRGGAATVFYPLWHIEAEELLVLKNNRGVDENRCRHLDYGVQLNRLMYQRLIQDSHI 351

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP EV  L+D +      FE  Y+ YE           RK++A  L+  ++     T
Sbjct: 352 SLFSPSEVPGLYDAFFEDQARFETLYKQYEEDTSIRR----RKVNARDLFALLMQERAST 407

Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN   P       +  SNLC EI L +           E A+C L ++NL
Sbjct: 408 GRIYIQNVDHCNEHGPFDPAKAPIRQSNLCMEIALPTKPLQSLDDEQGEIALCTLAAVNL 467

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               + +  D      T    VR LD ++D   + ++ A+ S H  R +G+G++ +   L
Sbjct: 468 GVLDSLDDIDE-----TAELLVRALDALLDYQHYPVKAAELSTHKRRPLGVGVINYAYYL 522

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y    A  +   + E + F  +SAS  LA+E+GA S F  +   +G  PID   
Sbjct: 523 AKHGYRYDDEGAKGLTHRTFERLQFALLSASNRLAREQGACSGFAETKLAKGSMPIDRYK 582

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +              W  L++ +   G+RNS   A+ P+ T A I   +  I+P   
Sbjct: 583 ADLDAV----CQEPLLCDWAALRESILEHGVRNSTLSALMPSETSAQIANATNGIEPPRA 638

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            + +K++  G    V   +     Q D LWD+                            
Sbjct: 639 LVSIKASKDGVLKQVVPEIERLADQYDLLWDQQ--------------------------- 671

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKT 899
                     +  A+  QK++DQA S N  Y  E         + L      A+ +GLKT
Sbjct: 672 -----SNAGYLALAAIMQKFVDQAISSNTSYQPERYPDRKVPMQTLLGDLLTAYKLGLKT 726

Query: 900 TYY--LRSRSATS-VEKSTLKGV 919
            YY   R  SA +  +K T+   
Sbjct: 727 LYYHNTRDGSAANHNQKETIAES 749


>gi|317130867|ref|YP_004097149.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475815|gb|ADU32418.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 726

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 237/740 (32%), Positives = 354/740 (47%), Gaps = 93/740 (12%)

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           L+ ++   I   EP++  V A   L++L ++V        ++    E+   +       +
Sbjct: 35  LLLAALDRISSDEPDWTYVAATIRLQQLYKQVAEK-----RQMRPEEVYTGFAHNVTYLV 89

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
           E G   + L  +    DL  L   L    D  F YLGL  L DRY      G  +E+PQ 
Sbjct: 90  EAGFYDQDLAGAYQKDDLERLEAALNKSNDSKFTYLGLHTLIDRYLTRDHEGHILELPQE 149

Query: 320 FFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            FM +AM L  +E +  +    +E Y  LS+ +   +TPTL N+G  H QLSSCF+ T+ 
Sbjct: 150 RFMIIAMTLMKEEKQSKRLDYVLEAYWALSNLYMTVATPTLSNAGKTHGQLSSCFIDTMD 209

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L GIF +  + A L+K  GG+G     +R  G+ I G  G S GV+P++K  N+TAV+
Sbjct: 210 DSLRGIFDSTTDAATLSKNGGGIGIYLGKIRAKGSSIKGFKGTSSGVLPWMKQLNNTAVS 269

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ T   +PDLFM++V    
Sbjct: 270 VDQLGQRQGAIAVYLDVWHKDIFSFLDAKLNNGDERKRTHDLFTGVCLPDLFMEKVEARE 329

Query: 498 GWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            W LF P EV              +     F   YE   R     +      + A+ + +
Sbjct: 330 AWFLFDPHEVRQTMGFSLEDFYDEERGAGSFREKYEQCVRDPRLSK----ESVPAIEIMK 385

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595
           +++    ETG P++ ++D  N ++P  H G+++ SNLCTEI  N S+             
Sbjct: 386 RVMISQLETGTPYMFYRDEANRQNPNAHCGMMYGSNLCTEIMQNMSATTIKEETTEDGKI 445

Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +  VCNL SINL     +       L+  I   VR+LDNVIDIN   + +A+ 
Sbjct: 446 LITKEAGDYVVCNLSSINLATAVTDGV-----LSRLIPIQVRMLDNVIDINNIEVPQARL 500

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L +  + + S EA+  AD+  E I++  I AS+ELA+E+GAY
Sbjct: 501 TNEKYRAIGLGTFGWHHLLAITGLRWESEEAINFADKLYEKIAYLTIEASMELAKEKGAY 560

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F+ S W  G                 +    +   W  L + V   G+RN   MA+AP
Sbjct: 561 EKFENSAWHTGK--------------YFSQRNYTDEKWIALAEMVNRSGLRNGYLMAVAP 606

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            ++ A I G + SIDP Y+  Y +   +    V                           
Sbjct: 607 NSSTAIIAGTTASIDPIYRKEYAEEKKNFRIPVTAP------------------------ 642

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
                   I       + +A +ID +W ++    RQK IDQ  S N+Y+ +    K+L  
Sbjct: 643 -------DISPATTWYYKSAHDIDQIWSVKQNGARQKHIDQGVSFNIYVKNTVKAKELLD 695

Query: 888 IYRQAWLMGLKTTYYLRSRS 907
           I+  AW  GLK+TYY+RS S
Sbjct: 696 IHLSAWKHGLKSTYYVRSTS 715


>gi|260582635|ref|ZP_05850424.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae NT127]
 gi|260094307|gb|EEW78206.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae NT127]
          Length = 756

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDAQEDLDD 747


>gi|85059562|ref|YP_455264.1| ribonucleotide-diphosphate reductase subunit alpha [Sodalis
           glossinidius str. 'morsitans']
 gi|84780082|dbj|BAE74859.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 760

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/806 (24%), Positives = 322/806 (39%), Gaps = 71/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG   + N  ++  +++ A  GL++VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRKETINLDKIHRVIDWAAEGLENVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                      ++  R +  
Sbjct: 64  KAAADLISREAPDYQYLAARLAVFHLRKKAYGQFEPPKL-----------YDHVSRLVTM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLTDYSAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L      T +      FYN +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YMLVAACLFSGYPRTTRLDYVKRFYNAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNKLMYQRLVKGEY 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TL SP +V  L+D +     EFE  Y  YE+ +        R+I AVAL+  M+     
Sbjct: 353 ITLLSPSDVPGLYDAFFADQDEFERLYTLYEQDSSIR----QRRIKAVALFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       +  SNLC EI L +   E    + G I L       
Sbjct: 409 TGRIYVQNVDHCNTHSPFDAAVAPIRQSNLCLEIALPTKPLEDVNDDSGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLGELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGVGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS +LA+ERGA   F  + + QG+ P+D+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNDLARERGACPWFNETTYAQGILPVDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D + ++      W+ L+  +K  G+RNS   A+ P+ T + I   +  ++P    + +
Sbjct: 586 DLDGI-VSEPLHYDWEALRADIKQHGLRNSTLSALMPSETSSQISNATNGLEPPRGLVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V    +   K        ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPESIPLQKAY-----ELLWEMPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGVMQKFVDQAISANTNYDPSRFPAGKVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R     E +       + +      
Sbjct: 734 TRD--GAEDAQEDMQSTQQDDCESGA 757


>gi|16130169|ref|NP_416737.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|74312754|ref|YP_311173.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei
           Ss046]
 gi|89109051|ref|AP_002831.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|157161717|ref|YP_001459035.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli HS]
 gi|170019453|ref|YP_001724407.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ATCC 8739]
 gi|170081852|ref|YP_001731172.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|194433299|ref|ZP_03065579.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194436240|ref|ZP_03068342.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|238901408|ref|YP_002927204.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli BW2952]
 gi|253772843|ref|YP_003035674.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162245|ref|YP_003045353.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B str. REL606]
 gi|256022084|ref|ZP_05435949.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           4_1_40B]
 gi|297516088|ref|ZP_06934474.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli OP50]
 gi|300931420|ref|ZP_07146749.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|300948932|ref|ZP_07162993.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|300958920|ref|ZP_07171023.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|301024216|ref|ZP_07187915.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|301647676|ref|ZP_07247470.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|307138892|ref|ZP_07498248.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli H736]
 gi|312973511|ref|ZP_07787683.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|331642863|ref|ZP_08343998.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|2507304|sp|P00452|RIR1_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha;
           AltName: Full=Protein B1; AltName:
           Full=Ribonucleoside-diphosphate reductase 1 R1 subunit;
           AltName: Full=Ribonucleotide reductase 1
 gi|2914218|pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914220|pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914222|pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
           The Activity Site From Escherichia Coli
 gi|2914311|pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|2914313|pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|2914315|pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
           The Specificity Site From Escherichia Coli
 gi|284793830|pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|284793831|pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|284793832|pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
           Resolution
 gi|1799581|dbj|BAA16053.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|2367133|gb|AAC75294.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|46275274|emb|CAA30056.2| ribonucleotide reductase [Escherichia coli K-12]
 gi|73856231|gb|AAZ88938.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           sonnei Ss046]
 gi|157067397|gb|ABV06652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli HS]
 gi|169754381|gb|ACA77080.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli ATCC 8739]
 gi|169889687|gb|ACB03394.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|194418393|gb|EDX34482.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194424968|gb|EDX40953.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|238863474|gb|ACR65472.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli BW2952]
 gi|242377868|emb|CAQ32636.1| nrdA, subunit of B1 protein and GDP reductase [multifunctional]
           [Escherichia coli BL21(DE3)]
 gi|253323887|gb|ACT28489.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974146|gb|ACT39817.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli B str. REL606]
 gi|253978313|gb|ACT43983.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli BL21(DE3)]
 gi|260448674|gb|ACX39096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli DH1]
 gi|299880522|gb|EFI88733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|300314423|gb|EFJ64207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|300451586|gb|EFK15206.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|300460790|gb|EFK24283.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|301074206|gb|EFK89012.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|309702544|emb|CBJ01871.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli ETEC H10407]
 gi|310332106|gb|EFP99341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|315136866|dbj|BAJ44025.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli DH1]
 gi|315615495|gb|EFU96127.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 3431]
 gi|320178794|gb|EFW53757.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           ATCC 9905]
 gi|323168603|gb|EFZ54283.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           sonnei 53G]
 gi|323936631|gb|EGB32917.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941072|gb|EGB37259.1| ribonucleotide reductase [Escherichia coli E482]
 gi|323961540|gb|EGB57148.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323973063|gb|EGB68257.1| ribonucleotide reductase [Escherichia coli TA007]
 gi|331039661|gb|EGI11881.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|332093863|gb|EGI98917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 5216-82]
 gi|332096124|gb|EGJ01127.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 155-74]
 gi|332344014|gb|AEE57348.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli UMNK88]
          Length = 761

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|113970254|ref|YP_734047.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           MR-4]
 gi|113884938|gb|ABI38990.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. MR-4]
          Length = 762

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/805 (23%), Positives = 330/805 (40%), Gaps = 69/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +   +I 
Sbjct: 5   MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++                      ++  + +E G
Sbjct: 65  SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + +   +FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EFE  Y  YE+ +   +    + + AV L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       +  SNLC EI L +          G I L    A N 
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               +  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    +
Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGM 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PID+     + 
Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFNETTYAQGILPIDTYKRDLDK 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +     L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 ICSEPL----HLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     +ELK    ++  ++  +  ++G +                     
Sbjct: 646 ASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   + L      A+ +G+KT YY  +
Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
           R   S +   +  ++ + +      
Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759


>gi|331673747|ref|ZP_08374510.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
 gi|331069020|gb|EGI40412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
          Length = 761

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|262274471|ref|ZP_06052282.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Grimontia hollisae CIP 101886]
 gi|262221034|gb|EEY72348.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/790 (23%), Positives = 311/790 (39%), Gaps = 70/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++   G   + +  ++  ++  A  GL +VS   V   ++   YDG+   D+   +I
Sbjct: 4   QITVLKRSGIKENIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYDGIKTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++              ++M           +E 
Sbjct: 64  KAAADLISEETPDYQYLAARLAVFHLRKKAYGRFEPPTLLDHVNKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +L  L + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEELNILDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YIMVAACLFANYPKETRLDYIRRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASAIVRYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE               AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFADQAEFERLYVKYE----NDPSIQRETRKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +        + G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPIRQSNLCLEIALPTKPLTNVEDDQGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       +R LD+++D   + +  A+K+    R +G+G++ F   L    
Sbjct: 469 LGAIKELDELEELADLTIRALDSLLDYQDYPLPAARKATMNRRTLGVGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + ASV LA+ERGA  +F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANGLTHRTFEAIQYYLLKASVGLAKERGACPAFNETNYAKGLLPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      WD L+  +   G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----CDEPLHYDWDALRAEIIEHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ +++ +DG +                    
Sbjct: 645 KASKDGILKQVVPEYEK-----YKDSYELLWNIESNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+ +G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPSKQPGGKVPMKLLLKDLLSAYKLGVKTLYYHN 733

Query: 905 SR-SATSVEK 913
           +R  A   +K
Sbjct: 734 TRDGADDAQK 743


>gi|157833699|pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
          Length = 761

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|30995466|ref|NP_439801.2| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae Rd KW20]
 gi|260581254|ref|ZP_05849072.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae RdAW]
 gi|1172938|sp|P43754|RIR1_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|260092081|gb|EEW76026.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae RdAW]
          Length = 756

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 318/794 (40%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + + 
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGSE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 734 TRDGAEDVQEDLDD 747


>gi|215275537|sp|P0C8H9|RIR1_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 778

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/785 (27%), Positives = 361/785 (45%), Gaps = 74/785 (9%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             LI     L     +Y+ + AR  + +L +   ++      KA   +          ++
Sbjct: 35  QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318
           ++   K + +             + + Y RD+    LG++ + + Y L   +G  +E PQ
Sbjct: 91  VDVVYKYKAI-----------FDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139

Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +MRVA M   + +    K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V 
Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNVN 199

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +   
Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494
            NQGG R GA   YLE WH D+  FL++ +      + R    ++    W+PDLFM+ + 
Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319

Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538
                     W LFSPD+  +LH ++           +EF+  Y  Y       E +   
Sbjct: 320 DQIHNRGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
             +A  + +     + + G+P+I FKD  N +S   HVG + +SNLC E+T+        
Sbjct: 375 VTTAKEIIKAWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E  VCNL ++NL A    N +DY  L          LDN+ID   +  E  ++SN  HR 
Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IG+G+ G       L I + SPEA+ + +     + + A+  S+ELA+E+G++ SF GS 
Sbjct: 495 IGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT------IGMRNSNCMAIAPT 769
             +G+   D      ++                 +K  +        G+RN    A+ PT
Sbjct: 555 ASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLRLAAIQGVRNGYLTALMPT 614

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           AT +N  G ++  +P   NLY +  +SG+F V+N +L+++LK+ +LW EA+   L    G
Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGG 674

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889
           SI +I  IP +++  + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  + 
Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
              W  GL T +YY         +K  ++  +   NA                       
Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771

Query: 949 ECEVC 953
           +CE C
Sbjct: 772 DCEAC 776


>gi|114047557|ref|YP_738107.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           MR-7]
 gi|113888999|gb|ABI43050.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. MR-7]
          Length = 762

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/805 (23%), Positives = 329/805 (40%), Gaps = 69/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +   +I 
Sbjct: 5   MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++                      ++  + +E G
Sbjct: 65  SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + +   +FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EFE  Y  YE+ +   +    + + AV L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       +  SNLC EI L +          G I L    A N 
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               +  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    +
Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGM 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I F+ + AS+ LA+E+ A   F  + + QG+ PID+     + 
Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQDACPLFNETTYAQGILPIDTYKRDLDK 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +     L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 ICSEPL----HLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     +ELK    ++  ++  +  ++G +                     
Sbjct: 646 ASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   + L      A+ +G+KT YY  +
Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
           R   S +   +  ++ + +      
Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759


>gi|188492275|ref|ZP_02999545.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|188487474|gb|EDU62577.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
          Length = 761

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDDSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|82544521|ref|YP_408468.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           Sb227]
 gi|81245932|gb|ABB66640.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           boydii Sb227]
 gi|320184865|gb|EFW59653.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri CDC 796-83]
 gi|332094119|gb|EGI99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 3594-74]
          Length = 761

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+G    F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|90412218|ref|ZP_01220224.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           profundum 3TCK]
 gi|90326942|gb|EAS43327.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium
           profundum 3TCK]
          Length = 753

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/789 (23%), Positives = 312/789 (39%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   +    ++  +++ A  GL +VS   V  +++   YDG+  +D+   +I
Sbjct: 4   QLTVTKRDGRKETIELDKIHRVIDWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++           A           +    + +
Sbjct: 64  KAAADLISEESPDYQYLAARLAIFNLRKKAYGQFEPPTLFA-----------HVTNLVNK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKGQN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ A   +      I A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASIKK----ESIKAIELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A++S    R +G+G++ +   L    
Sbjct: 469 LGAIDTLDDLEELADLTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + ASV LA+E+GA  +F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNVTHQAFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPIDTYKKAID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 DVCSEEL----HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYSK-----YKDNYELLWNIGSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   K L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPSKQANGKVPMKLLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEK 913
           +R   S  +
Sbjct: 734 TRDGASDNQ 742


>gi|212638242|ref|YP_002314762.1| ribonucleotide-diphosphate reductase subunit alpha [Anoxybacillus
           flavithermus WK1]
 gi|212559722|gb|ACJ32777.1| Ribonucleotide reductase, alpha subunit [Anoxybacillus flavithermus
           WK1]
          Length = 758

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 241/798 (30%), Positives = 378/798 (47%), Gaps = 94/798 (11%)

Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
                N + +  ++         +SS+  +  T +++    S  D+   LI ++   I  
Sbjct: 5   QQTEVNEETIRTLLFHIFKDFPHLSSERYIERTIRSLTYTKSHDDMMNKLILNALDEITV 64

Query: 213 E-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           E P++  V AR  L++L  E               +    + E     +  G+    + E
Sbjct: 65  EQPDWTFVAARLYLQQLYNEAAINRGYDVS-----DTYRYFYELQTMLVNLGIYDPFVLE 119

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330
                +L      +  ++D  F Y+GL+ L DRY     +G   E+PQ  F+ +A+ L +
Sbjct: 120 RYTKEELQEAGTWIDPKKDEQFTYIGLKTLVDRYLAKGYDGEIYELPQERFLTIALTLMV 179

Query: 331 KE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
            E   ++ +   E Y  LS+ +   +TPT  N+G  + QLSSCF+ TV D L GI+ +  
Sbjct: 180 NESKEKRMELVKEAYWALSNQYMTVATPTYANAGKSYGQLSSCFIDTVDDSLIGIYESNT 239

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           + A L+K  GG+G     +R   + I G  G S GVIP+++  N+TAV+V+Q G R+G++
Sbjct: 240 DVARLSKGGGGIGVYLGKIRARNSDIKGFKGVSSGVIPWMRQLNNTAVSVDQLGTRQGSI 299

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL+ WH D+  FLD + N GD+R++ HD+     IPDLFM++V +   W LF P EV 
Sbjct: 300 AVYLDVWHKDIFSFLDAKLNNGDERQKCHDLFYGVCIPDLFMEQVEKRGDWYLFDPHEVK 359

Query: 509 DLHDL-----YGKEFEIAY----------ENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +             E  Y          E YE   +  E+   R + A+ + +++L   
Sbjct: 360 KVMGWKDTDGNPLGLEDFYDEERGRGSFREKYEECINHPELSKER-VPAIEIMKRILKSQ 418

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595
            ETG P++ ++D  N  +P +H G+++SSNLCTEI  N S                    
Sbjct: 419 LETGTPYMFYRDEANRMNPNKHAGMIYSSNLCTEIMQNMSPTTVTKEYTQDGEIIIHKKP 478

Query: 596 -ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHT 652
            +  VCNL SI+L     +     D L   I   VR+LDNVID+N + IE  +A  +N  
Sbjct: 479 GDFVVCNLSSIHLARAVQD-----DVLERLIPIQVRMLDNVIDLNENRIEVLQAVMTNKK 533

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG   +   L L  I + S E+V+ AD+  E I++  I AS+ELA+E+GAY +F 
Sbjct: 534 YRAIGLGAFSWHHLLALKGIKWNSEESVDFADKLFEKIAYLTIRASMELAKEKGAYPAFA 593

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G +         ++R   + +    L WDELK++V   G+RN   MA AP A+ 
Sbjct: 594 GSDWHTGKYF--------DLRGYHSHDE---LDWDELKQQVMRHGIRNGYLMAPAPNAST 642

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S DP +  LY +   +    V       +L  +  W                
Sbjct: 643 SVLANGTASCDPVFNRLYFEEKKNYKIPVTVP----DLNAKTFW---------------- 682

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                       +  A+E+D    I   + RQK +DQ+ S NLY+ +    K L  ++  
Sbjct: 683 -----------FYENAYEVDQKMSIRQNAARQKHVDQSLSFNLYVYNTIKAKDLLDLHLT 731

Query: 892 AWLMGLKTTYYLRSRSAT 909
           AW   LK+TYY+RS + T
Sbjct: 732 AWKERLKSTYYVRSTAVT 749


>gi|24373962|ref|NP_718005.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           oneidensis MR-1]
 gi|24348404|gb|AAN55449.1|AE015682_4 ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           oneidensis MR-1]
          Length = 762

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/805 (23%), Positives = 326/805 (40%), Gaps = 69/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   + +  ++  ++  A  GL++VS   V   T+   +DG+    +   +I 
Sbjct: 5   MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E P+Y  + AR  +  LR++                      ++  + +E G
Sbjct: 65  SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + +   +FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EFE  Y  YE+ +   +    + + AV L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTLKAVDLFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       +  SNLC EI L +          G I L    A N 
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F + L    +
Sbjct: 470 GTITDLAELEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVINFANYLAKNGM 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + QG+ PID+     + 
Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYKRDLDK 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +     L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 ICSEPL----HLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     + LK     +  ++  +  ++G +                     
Sbjct: 646 ASKDGQLKQVVPDF-DTLK----NNYELLWQMPSNEGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D           + L      A+ +G+KT YY  +
Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPARFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
           R   S +   +  ++ + +      
Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759


>gi|170767383|ref|ZP_02901836.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
 gi|170123717|gb|EDS92648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
          Length = 761

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/781 (24%), Positives = 313/781 (40%), Gaps = 69/781 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISREAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEEI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTQYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                 ++  +  +DG +                     
Sbjct: 646 ASKDGILRQVVPDYEPL-----HDAYELLWKMPGNDGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  +
Sbjct: 681 ------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNT 734

Query: 906 R 906
           R
Sbjct: 735 R 735


>gi|146293169|ref|YP_001183593.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           putrefaciens CN-32]
 gi|145564859|gb|ABP75794.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella putrefaciens CN-32]
          Length = 762

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/806 (23%), Positives = 327/806 (40%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +    G   + + +++  ++  A  GL++VS   V   ++   YDG+    +   +I
Sbjct: 4   TITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++                      ++  + +E 
Sbjct: 64  KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPAL-----------YDHVTKLVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 GKYDMHILQDYTREELDLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  + K   +FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G +PF K       + 
Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ +   +    + I AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       +  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALN 468

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +  +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    
Sbjct: 469 LGAIKELSELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 MKYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KI----CNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     + LK     +  ++  +  +DG +                    
Sbjct: 645 KASKDGQLKQVVPDF-DTLKD----NYELLWKMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   + L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R   S +   +  ++ + +      
Sbjct: 734 TRDGASDQHDDITNLEKEDDGCAGGA 759


>gi|319426319|gb|ADV54393.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           putrefaciens 200]
          Length = 762

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/806 (23%), Positives = 327/806 (40%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +    G   + + +++  ++  A  GL++VS   V   ++   YDG+    +   +I
Sbjct: 4   TITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++                      ++  + +E 
Sbjct: 64  KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPAL-----------YDHVTKLVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 GKYDMHILQDYTREELDLMNTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  + K   +FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G +PF K       + 
Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ +   +    + I AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       +  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALN 468

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +  +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    
Sbjct: 469 LGAIKELSELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 MKYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KI----CNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     + LK     +  ++  +  +DG +                    
Sbjct: 645 KASKDGQLKQVVPDF-DTLKD----NYELLWKMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   + L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R   S +   +  ++ + +      
Sbjct: 734 TRDGASDQHDDITNLEKEDDGCAGGA 759


>gi|1574509|gb|AAC23305.1| ribonucleoside-diphosphate reductase, alpha chain (nrdA)
           [Haemophilus influenzae Rd KW20]
          Length = 781

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/794 (23%), Positives = 318/794 (40%), Gaps = 69/794 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 29  SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 88

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 89  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 137

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 138 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 197

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 198 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 257

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 258 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 317

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + + 
Sbjct: 318 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGSE 377

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 378 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 433

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 434 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 493

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 494 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 553

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +
Sbjct: 554 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 613

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 614 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 669

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N      + +  ++ D+  +DG +                    
Sbjct: 670 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 705

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 706 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 758

Query: 905 SRSATSVEKSTLKG 918
           +R      +  L  
Sbjct: 759 TRDGAEDVQEDLDD 772


>gi|323171913|gb|EFZ57557.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli LT-68]
          Length = 761

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    +
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|188533367|ref|YP_001907164.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia
           tasmaniensis Et1/99]
 gi|188028409|emb|CAO96270.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 761

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/782 (25%), Positives = 315/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A  GLQ+VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERIDLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++                M           +E 
Sbjct: 64  KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L      T +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRTTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFANQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIESLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N   +L W+ L++ VKT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----CNTPLQLDWEGLRESVKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D           K+L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|15802781|ref|NP_288808.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 EDL933]
 gi|15832371|ref|NP_311144.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. Sakai]
 gi|26248622|ref|NP_754662.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli CFT073]
 gi|91211527|ref|YP_541513.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UTI89]
 gi|110642442|ref|YP_670172.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 536]
 gi|117624428|ref|YP_853341.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli APEC O1]
 gi|157156706|ref|YP_001463583.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli E24377A]
 gi|168761334|ref|ZP_02786341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168787140|ref|ZP_02812147.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|170682262|ref|YP_001744430.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SMS-3-5]
 gi|191170225|ref|ZP_03031779.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|217327968|ref|ZP_03444051.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218559151|ref|YP_002392064.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli S88]
 gi|218690397|ref|YP_002398609.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ED1a]
 gi|218695840|ref|YP_002403507.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 55989]
 gi|218700705|ref|YP_002408334.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI39]
 gi|218705764|ref|YP_002413283.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UMN026]
 gi|227887292|ref|ZP_04005097.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|237704710|ref|ZP_04535191.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|261223313|ref|ZP_05937594.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261259137|ref|ZP_05951670.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291283478|ref|YP_003500296.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|293405701|ref|ZP_06649693.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1412]
 gi|293410598|ref|ZP_06654174.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|293446577|ref|ZP_06662999.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B088]
 gi|298381382|ref|ZP_06990981.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|300818166|ref|ZP_07098378.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|300822683|ref|ZP_07102821.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 119-7]
 gi|300897698|ref|ZP_07116096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300918604|ref|ZP_07135192.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300936791|ref|ZP_07151684.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300981253|ref|ZP_07175430.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300983267|ref|ZP_07176506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|301022394|ref|ZP_07186278.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|301048986|ref|ZP_07195973.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|306814653|ref|ZP_07448815.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|312967535|ref|ZP_07781750.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|331647889|ref|ZP_08348981.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331658315|ref|ZP_08359277.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331663741|ref|ZP_08364651.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331678185|ref|ZP_08378860.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|331683910|ref|ZP_08384506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
 gi|12516569|gb|AAG57363.1|AE005455_4 ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Escherichia coli O157:H7 str. EDL933]
 gi|26109027|gb|AAN81230.1|AE016763_189 Ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli CFT073]
 gi|13362586|dbj|BAB36540.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|91073101|gb|ABE07982.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1
           [Escherichia coli UTI89]
 gi|110344034|gb|ABG70271.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli 536]
 gi|115513552|gb|ABJ01627.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli APEC O1]
 gi|157078736|gb|ABV18444.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E24377A]
 gi|170519980|gb|ACB18158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli SMS-3-5]
 gi|189368234|gb|EDU86650.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189372942|gb|EDU91358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|190909741|gb|EDV69326.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|209765528|gb|ACI81076.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765530|gb|ACI81077.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765534|gb|ACI81079.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|217320335|gb|EEC28760.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218352572|emb|CAU98351.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli 55989]
 gi|218365920|emb|CAR03662.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli S88]
 gi|218370691|emb|CAR18502.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli IAI39]
 gi|218427961|emb|CAR08881.2| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli ED1a]
 gi|218432861|emb|CAR13755.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli UMN026]
 gi|222033995|emb|CAP76736.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli LF82]
 gi|226901076|gb|EEH87335.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|227835642|gb|EEJ46108.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|281179325|dbj|BAI55655.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia
           coli SE15]
 gi|284922225|emb|CBG35307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia
           coli 042]
 gi|290763351|gb|ADD57312.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323407|gb|EFE62835.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B088]
 gi|291427909|gb|EFF00936.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1412]
 gi|291471066|gb|EFF13550.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|294492897|gb|ADE91653.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli IHE3034]
 gi|298278824|gb|EFI20338.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|300299178|gb|EFJ55563.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|300307617|gb|EFJ62137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300358576|gb|EFJ74446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300397544|gb|EFJ81082.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|300408601|gb|EFJ92139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|300414256|gb|EFJ97566.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300458121|gb|EFK21614.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300524883|gb|EFK45952.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 119-7]
 gi|300529310|gb|EFK50372.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|305852047|gb|EFM52499.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|307554300|gb|ADN47075.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli ABU 83972]
 gi|312287732|gb|EFR15637.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|312946855|gb|ADR27682.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285848|gb|EFU45288.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 110-3]
 gi|315292182|gb|EFU51534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 153-1]
 gi|315298060|gb|EFU57329.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 16-3]
 gi|320192145|gb|EFW66790.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC1212]
 gi|320196103|gb|EFW70727.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli WV_060327]
 gi|320641060|gb|EFX10539.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. G5101]
 gi|320646449|gb|EFX15368.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. 493-89]
 gi|320651546|gb|EFX19926.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. H 2687]
 gi|320657298|gb|EFX25100.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663125|gb|EFX30438.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667817|gb|EFX34725.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323184147|gb|EFZ69524.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1357]
 gi|323188038|gb|EFZ73333.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli RN587/1]
 gi|323945043|gb|EGB41108.1| ribonucleotide reductase [Escherichia coli H120]
 gi|323956003|gb|EGB51756.1| ribonucleotide reductase [Escherichia coli H263]
 gi|323967676|gb|EGB63088.1| ribonucleotide reductase [Escherichia coli M863]
 gi|323977568|gb|EGB72654.1| ribonucleotide reductase [Escherichia coli TW10509]
 gi|324006610|gb|EGB75829.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 57-2]
 gi|324013120|gb|EGB82339.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 60-1]
 gi|325496726|gb|EGC94585.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ECD227]
 gi|326344043|gb|EGD67804.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1044]
 gi|327252503|gb|EGE64162.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli STEC_7v]
 gi|330912065|gb|EGH40575.1| ribonucleotide reductase of class 1a (aerobic), alpha subunit
           [Escherichia coli AA86]
 gi|331043613|gb|EGI15751.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331056563|gb|EGI28572.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331059540|gb|EGI31517.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331074645|gb|EGI45965.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|331078862|gb|EGI50064.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
          Length = 761

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|24113614|ref|NP_708124.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 301]
 gi|30063668|ref|NP_837839.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 2457T]
 gi|24052671|gb|AAN43831.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 2a str. 301]
 gi|30041923|gb|AAP17649.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 2a str. 2457T]
 gi|281601679|gb|ADA74663.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017]
 gi|313651059|gb|EFS15458.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332754882|gb|EGJ85247.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 4343-70]
 gi|332755285|gb|EGJ85649.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-671]
 gi|332756581|gb|EGJ86932.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2747-71]
 gi|332766055|gb|EGJ96265.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2930-71]
 gi|333001381|gb|EGK20949.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri VA-6]
 gi|333002008|gb|EGK21574.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-218]
 gi|333002602|gb|EGK22162.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-272]
 gi|333016363|gb|EGK35694.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-304]
 gi|333016744|gb|EGK36072.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-227]
          Length = 761

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|324112771|gb|EGC06747.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 761

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|332306883|ref|YP_004434734.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174212|gb|AEE23466.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 790

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 192/811 (23%), Positives = 313/811 (38%), Gaps = 71/811 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             L +    G   S + +++  ++  A  GL +VS   V  + +   YDG+   D+   L
Sbjct: 22  NNLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETL 81

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI  + P+Y  + AR  +  LR++           A   +M           IE
Sbjct: 82  IRSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPALFAHVTQM-----------IE 130

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
                + L     + +   + + + + RD  F Y  ++ L  +Y     + G   E  Q 
Sbjct: 131 MQKYDQHLLSDYSEAEFQEMDDYIDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQF 190

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     +  +      FY+  S F     TP +    T   Q SSC L    
Sbjct: 191 LYILVAACLFADYPKDTRMDYIKRFYDATSKFKISLPTPIMAGVRTPTRQFSSCVLIEAG 250

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 251 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 310

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++ 
Sbjct: 311 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKDQ 370

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D +     +FE  Y  YE+     +     ++ AV L+   +    
Sbjct: 371 HISLFSPSDVPGLYDAFFADQAKFEELYVKYEQDDSIRKT----QVKAVELFSLFMQERA 426

Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  ++   D CN  SP       +  SNLC EI L +   E      G I L      
Sbjct: 427 STGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLSAF 486

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   +  A     AVR LDN++D   + +  A  +    R +G+G++ F   L   
Sbjct: 487 NLGAIESVEDFAEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINFAYYLAKN 546

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +   + E + +H + AS  LA+E+GA   F  + + QG+ PID+     
Sbjct: 547 GVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPIDTYKKDL 606

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       +      WD L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ 
Sbjct: 607 DKI----CDEPLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHIS 662

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VKS+  G    V         +       ++ DL  +DG +                   
Sbjct: 663 VKSSKDGVLKQVVPEYERLKDKY-----ELLWDLPSNDGYLQ------------------ 699

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY- 902
                        QK++DQ  S N   D       +   K L      A+ +G+KT YY 
Sbjct: 700 --------LTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLLTAYQLGVKTLYYH 751

Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
             R  +A + ++           AV   D +
Sbjct: 752 NTRDGAADTSQQELKSAQFVPQEAVVEEDDD 782


>gi|323952029|gb|EGB47903.1| ribonucleotide reductase [Escherichia coli H252]
          Length = 761

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  E+ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|215487451|ref|YP_002329882.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O127:H6 str. E2348/69]
 gi|215265523|emb|CAS09926.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 761

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E  
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMS 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|113461339|ref|YP_719408.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           somnus 129PT]
 gi|112823382|gb|ABI25471.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Haemophilus somnus 129PT]
          Length = 756

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/795 (23%), Positives = 319/795 (40%), Gaps = 69/795 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL++VS  +V  +++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFEPPKL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSRYPKETRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L   +
Sbjct: 469 LGALENLDELEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYAYYLAKNN 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 N----LTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKGV 919
           +R      +  L   
Sbjct: 734 TRDGAEDMQEDLDDA 748


>gi|170718503|ref|YP_001783715.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           somnus 2336]
 gi|168826632|gb|ACA32003.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           somnus 2336]
          Length = 756

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/795 (23%), Positives = 320/795 (40%), Gaps = 69/795 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL++VS  +V  +++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFEPPKL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSRYPKETRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  +  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L   +
Sbjct: 469 LGALENLDELEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYAYYLAKNN 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 N----LTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N  +     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKGV 919
           +R      +  L   
Sbjct: 734 TRDGAEDMQEDLDDA 748


>gi|120598754|ref|YP_963328.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp.
           W3-18-1]
 gi|120558847|gb|ABM24774.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella sp. W3-18-1]
          Length = 762

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/806 (23%), Positives = 327/806 (40%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +    G   + + +++  ++  A  GL++VS   V   ++   YDG+    +   +I
Sbjct: 4   TITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++                      ++  + +E 
Sbjct: 64  KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPAL-----------YDHVTKLVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 GKYDMHILQDYTREELDLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  + K   +FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G +PF K       + 
Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ +   +    + I AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       +  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALN 468

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +  +L      AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    
Sbjct: 469 LGAIKELSELERLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 MRYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KI----CNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     + LK     +  ++  +  +DG +                    
Sbjct: 645 KASKDGQLKQVVPDF-DTLKD----NYELLWKMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   + L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R   S +   +  ++ + +      
Sbjct: 734 TRDGASDQHDDITNLEKEDDGCAGGA 759


>gi|110806204|ref|YP_689724.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 5 str. 8401]
 gi|110615752|gb|ABF04419.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           flexneri 5 str. 8401]
          Length = 761

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDVSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|237732273|ref|ZP_04562754.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
 gi|226907812|gb|EEH93730.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
          Length = 761

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/783 (24%), Positives = 317/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                      ++  + +E 
Sbjct: 64  KAAADLISREAPDYQYLAARLAIFHLRKKAYGEFEPPKL-----------FDHVVKMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ +   L    
Sbjct: 469 LGAIESLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    + W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AIA----NEPLHMDWEQLRESIKTYGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + L   +   +E+
Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLHDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|2914234|pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 gi|2914236|pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
 gi|2914238|pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
           And Effector Dttp From Escherichia Coli
          Length = 761

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSAS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|191166528|ref|ZP_03028358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|193062323|ref|ZP_03043418.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|193068151|ref|ZP_03049115.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|194427206|ref|ZP_03059757.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|209919686|ref|YP_002293770.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SE11]
 gi|218554797|ref|YP_002387710.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI1]
 gi|256017604|ref|ZP_05431469.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|260844830|ref|YP_003222608.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260856284|ref|YP_003230175.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260868964|ref|YP_003235366.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|307311199|ref|ZP_07590843.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|309793114|ref|ZP_07687542.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|332278614|ref|ZP_08391027.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|190903488|gb|EDV63207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|192931989|gb|EDV84588.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|192958430|gb|EDV88869.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|194414827|gb|EDX31098.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|209912945|dbj|BAG78019.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia
           coli SE11]
 gi|218361565|emb|CAQ99156.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli IAI1]
 gi|257754933|dbj|BAI26435.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257759977|dbj|BAI31474.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257765320|dbj|BAI36815.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|306908705|gb|EFN39202.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|308123400|gb|EFO60662.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|315061534|gb|ADT75861.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli W]
 gi|320199829|gb|EFW74418.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli EC4100B]
 gi|323156511|gb|EFZ42665.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli EPECa14]
 gi|323161695|gb|EFZ47578.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E128010]
 gi|323176839|gb|EFZ62429.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1180]
 gi|323377885|gb|ADX50153.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli KO11]
 gi|324020906|gb|EGB90125.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 117-3]
 gi|324117883|gb|EGC11782.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|332100966|gb|EGJ04312.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 761

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    +
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|152979131|ref|YP_001344760.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           succinogenes 130Z]
 gi|150840854|gb|ABR74825.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinobacillus
           succinogenes 130Z]
          Length = 756

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/795 (23%), Positives = 317/795 (39%), Gaps = 71/795 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +G     +  +L  ++  A  GL +VS   V   ++   Y+G+  +D+   +I
Sbjct: 4   TLMVTKRNGKQEPLDLDKLHRVITWAAEGLHNVSVSQVELRSHIQFYEGIRTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI K+ P+Y  + AR  +  LR++                      E+  + +E 
Sbjct: 64  KSAADLISKDAPDYQYLAARLSVFHLRKKAFGQFEPPHL-----------YEHVKKLVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   + + L + RD  F Y   + L  +Y     + G   E  Q  
Sbjct: 113 GKYDQALLTDYGREEWEQMNDFLDHWRDMNFSYAATKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  SSF     TP +    T   Q SSC L    D
Sbjct: 173 YILVAASLFSQYPKATRLDYVRRFYDATSSFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGQIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     +FE  Y  YE+     +    R + A+ L+  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDKFEQLYVQYEQDPAIRK----RSVKAIELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D  N  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIHNVDHTNTHSPFDPSVAPVRQSNLCLEIALPTKPLQNINDEDGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L +    AVR LD ++D   + +  A++S+   R++G+G++ +   L   +
Sbjct: 469 LGKLENLDELDNLADLAVRALDALLDYQDYPVAAARRSSLGRRSLGIGVINYAYYLAKNN 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y++  A  +   + E I ++ + AS+ LA+E+G    F  + + QG+ PID+     +
Sbjct: 529 MRYSNGSANALTHRTFEAIQYYLLKASMNLAKEQGKCELFHETRYAQGILPIDTYKKDVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+  ++  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 G----LTDEPLHYDWETLRADIQKYGLRNSTVTALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    ++L + +   +++
Sbjct: 645 KASKDGILKQVVPDY--------------------------------ENLGENYELLWDM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
             M   +      QK++DQA S N   D       +   K L      A+  GLKT YY 
Sbjct: 673 PTMDGYLHLVGIMQKFVDQAISANTNYDPQRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQ 732

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  +  
Sbjct: 733 NTRDGAEDAQEDMDD 747


>gi|300903616|ref|ZP_07121534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|301303306|ref|ZP_07209431.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|300404352|gb|EFJ87890.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|300841480|gb|EFK69240.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|315255169|gb|EFU35137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 85-1]
          Length = 761

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|212712303|ref|ZP_03320431.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM
           30120]
 gi|212685049|gb|EEB44577.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM
           30120]
          Length = 763

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 198/802 (24%), Positives = 313/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++           A           +    +E 
Sbjct: 64  KAAADLITGETPDYQYLAARLAIFNLRKKAYGQFEPPKLYA-----------HVKHLVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E   + D   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSHYPQATRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N  
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     E      + AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQD----ETIRKSSVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AKK +   R +G+G++ +   L    
Sbjct: 469 LGAIESLDELEELAILAVRALDALLDYQDYPIPAAKKGSMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKRELD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 K----LTNEPLHYDWEALRAEIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++  +  + G +                    
Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNSGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +    +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISSNTNYDPTRFPNGKVPMNQLLKDLLLAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755


>gi|307129980|ref|YP_003881996.1| Ribonucleotide reductase of class Ia (aerobic), subunit alpha
           [Dickeya dadantii 3937]
 gi|306527509|gb|ADM97439.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Dickeya dadantii 3937]
          Length = 762

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/807 (23%), Positives = 317/807 (39%), Gaps = 71/807 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                      ++  + +E 
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------HDHVIKMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E   + +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ A  L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFTNQDEFERLYVKYEQDDSIRK----KQLKAAELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   +   V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                   +L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAISSLHELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PIDS     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPIDSYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 SICSEPL----HYDWEALRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +++
Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D            +L      A+  GLKT YY 
Sbjct: 673 PSNDGYLQLVGLMQKFVDQAISSNTNYDPARFPSGKVPMTQLLKDLLTAYKFGLKTLYYQ 732

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930
            +R      +  L     + +      
Sbjct: 733 NTRDGAEDAQDDLLDTAPQDDGCESGA 759


>gi|119774863|ref|YP_927603.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           amazonensis SB2B]
 gi|119767363|gb|ABL99933.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella amazonensis SB2B]
          Length = 782

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 190/805 (23%), Positives = 324/805 (40%), Gaps = 69/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G     +  ++  +V  A  GL++VS   V   ++   ++G+    +   +I 
Sbjct: 25  MTVTKRSGEREQIDLDKIHRVVTWAAKGLKNVSVSEVELRSHLQFFEGIPTEAIHETIIK 84

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 85  AAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LVEMG 133

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              R + E     +L  L + + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 134 KYDRHILEDYTKEELDVLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 193

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + K   +FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 194 ILVAACLFAGYPKETRLKYVKDFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 253

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 254 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 313

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 314 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 373

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y  YE++    +    + + AV L+  M+     T
Sbjct: 374 TLFSPSDVPGLYDAFFENQDEFERLYTKYEQEPSIRK----KSLKAVELFSLMMQERAST 429

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  ++   D CN  SP       +  SNLC EI L +   ++     G I L    A N 
Sbjct: 430 GRIYVQNVDHCNTHSPFDSSVAPIRQSNLCLEIALPTKPLDSVDDTNGEIALCTLSALNL 489

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + ++L      AVR LD+++D   + I+ AK  +   R +G+G++ F + L     
Sbjct: 490 GAIENLEELEGLSDLAVRALDSLLDYQDYPIKAAKLGSMNRRTLGIGVINFANYLAKNGK 549

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I F+ + AS+ LA+E+GA  +F  + + QG+ PID+     + 
Sbjct: 550 KYSDGSANNLTHKTFEAIQFNLLKASMNLAKEKGACPAFHETTYSQGILPIDTYKRDLDK 609

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 610 I----CDEPLHLDWEGLRADIKHYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 665

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                 ++  +  +DG +                     
Sbjct: 666 ASKDGQLKQVVPDFDEL-----RNAYELLWQMPSNDGYLQ-------------------- 700

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D           + L      A+ +GLKT YY  +
Sbjct: 701 ------LVGIMQKFVDQAISANTNYDPAKFEGRKVPMQLLLKDLLTAYKLGLKTLYYHNT 754

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
           R   + +   +  V+ + +      
Sbjct: 755 RDGATDQHDDIAVVEKEDDGCAGGA 779


>gi|82777643|ref|YP_403992.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae Sd197]
 gi|309785073|ref|ZP_07679706.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
 gi|81241791|gb|ABB62501.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella
           dysenteriae Sd197]
 gi|308927443|gb|EFP72917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
          Length = 761

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V +L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPELYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|331653668|ref|ZP_08354669.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
 gi|331048517|gb|EGI20593.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
          Length = 761

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|317499962|ref|ZP_07958198.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898679|gb|EFV20714.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 761

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 240/786 (30%), Positives = 376/786 (47%), Gaps = 101/786 (12%)

Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PN 215
           +  +E+    +     + V S  +L E +   +   + + +   ALI ++  L  +E P 
Sbjct: 25  QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGERFDALIKAAAELTSQEAPR 84

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  +    L  +   ++            + ++  L         E+G+    + E+   
Sbjct: 85  WEMIAGWLLDFRFSEKLKEEEKSIGISDLYEKIVYL--------TEKGLYGSYIMENYSK 136

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE 334
            ++V   + +  ER+  F Y GL +L  RY         +E PQ  F+ +A+ LA+ E  
Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196

Query: 335 --KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             +     EFY++LS      +TPTL N+     QLSSCF+ TVPD L GIF ++   AM
Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R GAV  YL
Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV--- 507
           + WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N    W L  P E+   
Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376

Query: 508 --SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L D +G+E+E  Y +    A   +    R +    L R ++    ETG P+   +D
Sbjct: 377 KGYCLEDSFGEEWERRYWDCVHDARIKK----RTVLLKDLIRLIIKSAAETGTPFAFNRD 432

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNL 602
             N  +P  H G+++ SNLCTEI  N S+                        E  VCNL
Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S++L     N   D   +   +RT VR LDNVID+N + +  AK +NHT+R+IGLG+ G
Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    I + S E +   D+  E I++ AI AS + A+E+G+Y  F+GS W+ G   
Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESG--- 606

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                  W EL+++V   GMRN+  +AIAPT++ + I G +  I
Sbjct: 607 -----------AYFEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           DP                V+N + + E K       +M+  +            +  +  
Sbjct: 656 DP----------------VMNKYFLEEKKG------SMLPRVA---------PDLSPETY 684

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A  ID  W + +   RQ+ +DQAQS+N Y+ ++ + +++  +Y +AW  G+KT Y
Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744

Query: 902 YLRSRS 907
           Y+RS+S
Sbjct: 745 YVRSKS 750


>gi|271499643|ref|YP_003332668.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya
           dadantii Ech586]
 gi|270343198|gb|ACZ75963.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya
           dadantii Ech586]
          Length = 762

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 197/806 (24%), Positives = 317/806 (39%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVKM-VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E   + +  ++   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDRHLLEDYTEEEFAHMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSSYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YER     +    +++ A  L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFNNQDEFERLYVKYERDDSIRK----KQLKAAELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   +   V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                   +L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAISSLHELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS +LA+E+GA   F  + + QG+ PIDS     +
Sbjct: 529 VRYSDGSANNLTHQTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPIDSYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 NICSEPL----HYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYETLKNAY-----ELLWDMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D            +L      A+  GLKT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKFGLKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R      +  L     + +      
Sbjct: 734 TRDGAEDAQDDLLDSAPQDDGCESGA 759


>gi|326782457|ref|YP_004322857.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
 gi|310003405|gb|ADO97802.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
          Length = 765

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 204/833 (24%), Positives = 339/833 (40%), Gaps = 88/833 (10%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           +  ++  +K++  DG     N +++  +VE AC GL  VS+  V   +    YDG+  SD
Sbjct: 2   EKSMSNGIKVVKRDGVEEPINLEKIHKMVEHACYGLASVSASQVEINSGIQFYDGIKTSD 61

Query: 198 LETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           ++  LI S+  LI    PNY  V AR LL  LR+ V     +   K           +  
Sbjct: 62  IQEILIRSANDLISLDNPNYQFVAARLLLFGLRKSVYGVSPENHPKVE---------DQL 112

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRI 314
              IE GV  + L ++    +   + + + ++RD  F Y GL+ + D+Y      +G   
Sbjct: 113 SGGIESGVYDQSLIKAYSSEEFAEMDSYMDHDRDMLFTYAGLRQVVDKYLVQDRSSGKIY 172

Query: 315 EMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           E PQ  +M +A  L     +  +      +YN +S       TP +    T   Q +SC 
Sbjct: 173 ETPQYMYMLIAATLFQKYPQETRLDYVRRYYNAISKHQINIPTPVMAGVRTPLRQFASCV 232

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  V D L  IF +            G+G +   +RG+ + I G   +  GVIPFLK   
Sbjct: 233 LVDVDDTLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFE 292

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R
Sbjct: 293 STVRCCTQNGIRGGSATVHFPIWHSEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYER 352

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              N   +LFSP++V  L+D +G + F+  Y +YE           + ++A  L   +L 
Sbjct: 353 FIANGEISLFSPNDVPGLYDAFGTDAFDACYVDYESDQSVPR----KIVNAQELVLSLLK 408

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--- 608
              ETG  ++   D CN  S  +    V+ SNLC EITL +        + G I L    
Sbjct: 409 ERAETGRLYLMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPINHINDDAGEIALCILS 466

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           A         D++ +    AVR L+ +ID   + ++ A++S    R++G+G +G    L 
Sbjct: 467 AINVGKLKTLDEMETLCDLAVRGLEELIDYQDYPVDAARRSTLARRSLGIGYIGLAHYLA 526

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
              + Y++ EA+    +  E   ++ + AS ++AQE+G    F  + +  GV PIDS   
Sbjct: 527 KRGLKYSAQEALSEVHDLTEAFQYYLLRASNKIAQEKGPCQDFGRTKYSDGVLPIDSY-- 584

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +  D L +       WD L+  + T G+R+S   A  P+ + + +   +  I+P    
Sbjct: 585 -KKDVDALVLPEY-NYDWDSLRSDITTYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDY 642

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           L +K +  G    +                                    + LK  +   
Sbjct: 643 LSIKKSKKGPLKQIVPQY--------------------------------NSLKNNYTLL 670

Query: 849 FEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
           +++      IE  +  QK+ DQA S N          +E     +   +   +  G KT+
Sbjct: 671 WDMESNKGYIEIVAVIQKFFDQAISGNWSYNPEQYPDNEVPVSVMANDFLNTYKYGWKTS 730

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           YY                     N            +L      T + +C+ C
Sbjct: 731 YY--------------------QNTYDAKKDGDEIETLIQELLETEEEDCDSC 763


>gi|251790601|ref|YP_003005322.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya zeae
           Ech1591]
 gi|247539222|gb|ACT07843.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae
           Ech1591]
          Length = 762

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 196/807 (24%), Positives = 315/807 (39%), Gaps = 71/807 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYNHVVKM-VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               R L E   + +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 AKYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    ++I A  L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFNNQDEFERLYVKYEQDDSIRK----QQIKAAELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                   +L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAISSLHELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y++  A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PIDS     +
Sbjct: 529 VRYSNGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPIDSYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 NICSEPL----HHDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +++
Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQA S N   D            +L      A+  GLKT YY 
Sbjct: 673 PSNDGYLQLVGLMQKFIDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKFGLKTLYYQ 732

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930
            +R      +  L     + +      
Sbjct: 733 NTRDGAEDAQDDLLDTAAQDDGCESGA 759


>gi|2981919|pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 gi|2981921|pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 gi|2981923|pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC +I L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|126174280|ref|YP_001050429.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS155]
 gi|153000810|ref|YP_001366491.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS185]
 gi|304408852|ref|ZP_07390473.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS183]
 gi|307302855|ref|ZP_07582610.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica BA175]
 gi|125997485|gb|ABN61560.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella baltica OS155]
 gi|151365428|gb|ABS08428.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS185]
 gi|304352673|gb|EFM17070.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS183]
 gi|306913215|gb|EFN43637.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica BA175]
          Length = 762

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/806 (23%), Positives = 324/806 (40%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +    G   + + +++  ++  A  GL++VS   V   ++   +DG+    +   +I
Sbjct: 4   TMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPALYT-----------HVTKLVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 GKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  + K   +FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G +PF K       + 
Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ +   +    + I AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       +  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALN 468

Query: 615 QFDYDKL---ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +L         AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    
Sbjct: 469 LGSIKELSDIEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A E+   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 MKYSDGSANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +     L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KICAEPL----HLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KS+  G    V     + LK        ++  +  +DG +                    
Sbjct: 645 KSSKDGQLKQVVPDF-DTLKD----SYELLWKMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   + L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R   S     +  ++ + +      
Sbjct: 734 TRDGASDSHDDITNLEKEDDGCAGGA 759


>gi|218548312|ref|YP_002382103.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ATCC 35469]
 gi|218355853|emb|CAQ88466.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 761

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +       W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IANEQL----HYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|326561646|gb|EGE11983.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 103P14B1]
 gi|326573452|gb|EGE23420.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 101P30B1]
          Length = 758

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +
Sbjct: 5   DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI  E P+Y  + AR  +  LR+            A           +     E
Sbjct: 65  IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           +G   + +       +   L + + + RD    Y  ++ +  +Y     +     E PQ 
Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L    
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I               G+G +   +R LG+ I G   +  G IPF K+      +
Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +    + FE  Y  YE   +  +    RK+ A  L+  ML    
Sbjct: 354 DITLFSPSDVPGLYEAFFANQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L ++  +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    +KL+         VR LD ++D   + +  AKK +   R +G+G++ +   L   
Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PID+     
Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V   +     Q       ++ ++  ++G                     
Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 +      QK+IDQ+ S N   D       +   K L      A+  G+KT YY 
Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 735 NTRDGADDAQGDLDD 749


>gi|215275535|sp|P0C8H7|RIR1_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
          Length = 779

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 216/816 (26%), Positives = 366/816 (44%), Gaps = 85/816 (10%)

Query: 180 IVLSETYKNMYDGLSESDLETAL-----------IFSSRTLIEKEPNYAKVTARFLLEKL 228
            ++ +   + Y      DL+  L           I     L     +Y+ + AR  +  L
Sbjct: 5   FIVKKLASDTYGKALNVDLDRLLQAQNKYTLQELISYCSALTILHYDYSTLAARLSVYLL 64

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
            +   ++      +A   +          ++++   K + +             + + Y 
Sbjct: 65  HQSTASSF----SEAVSLQAAQSCSRLSPQFVDVVYKYKAI-----------FDSYIDYS 109

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA-MGLALKETEKEKRAVEFYNLL 346
           RD+    LG++ + + Y L   +G  +E PQ  +MRVA M   +      K  +  Y+LL
Sbjct: 110 RDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGRVVNMKMILLTYDLL 169

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S      ++PT+FN+GT+ PQLSSCFL  V D+L  ++  ++   +++   GG+G   + 
Sbjct: 170 SRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGIISGGGGGIGLCLSG 229

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R   + I G+  +S G+  ++ + N +    NQGG R GA   YLE WH D+  FL + 
Sbjct: 230 IRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQDIFTFLQMP 289

Query: 467 K---NTGDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLY--- 514
           +      + R    ++    W+PDLFM+ +           W LFSPD+  +LH ++   
Sbjct: 290 RLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDRGDGTWYLFSPDQAPNLHKVFDLE 349

Query: 515 -------GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                   +EF   Y  Y       E +     +A  + ++    + + G+P+I FKD  
Sbjct: 350 RSRHKNAHREFRKLYYQYVA-----EKRYTGVTTAKEIIKEWFKTVIQVGNPYIGFKDAI 404

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSE---ETAVCNLGSINLLAHFANNQFDYDKLAST 624
           N +S   HVG + +SNLC EIT+        E  VCNL ++NL A    N +DY  L   
Sbjct: 405 NRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAVNLAAFIRENSYDYRGLIEA 464

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
                  LDN+ID   +  E  ++SN  HR IG+G+ G         + + SPEA+ + +
Sbjct: 465 AGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASFKMKFGSPEAIAMDE 524

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL------LAEVRDELAM 738
                + + A+  SVELA+E+G++ SF GS   +G+   D            E R     
Sbjct: 525 AIHAALYYGAMRRSVELAKEKGSHPSFPGSAASKGLLQPDLWVRCDDLVFSWEERVAQTT 584

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                       +     G+RN    A+ PTAT +N  G ++  +P   NLY +  +SG+
Sbjct: 585 QGVLTPKKWWQLRLAAMQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGE 644

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F V+N +L+++LK+ +LW EA+   L    GSI +I  IP ++++ + T+ E++   L +
Sbjct: 645 FIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTK 704

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  ++ Q+ SLN Y  EP   ++  +    W  GL T +YY         +K  ++
Sbjct: 705 HAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIR 764

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +                      +C++D  CE C
Sbjct: 765 NSE---------------------KACSAD--CEAC 777


>gi|239628851|ref|ZP_04671882.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518997|gb|EEQ58863.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales
           bacterium 1_7_47FAA]
          Length = 751

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 229/750 (30%), Positives = 362/750 (48%), Gaps = 95/750 (12%)

Query: 193 LSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           ++  +   ALI S+  L  +E P +    AR    +  +EV   +      + + +++ L
Sbjct: 51  MTAEEHMEALIRSAAELTSREAPRWEFAAARLRYCQFEQEVKERLGTLGIASLYDKLKYL 110

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
                    ++G+    + E+    ++      ++ ER+  F Y GL +L  RY +    
Sbjct: 111 --------TDQGLYGAYILENYSREEIAQAQGFIREERNCLFTYAGLDLLLKRYVIQDRE 162

Query: 312 SR-IEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
              +E PQ  ++ +A+ LA+KE +  + +    FY++LS      +TPTL N+   + QL
Sbjct: 163 RHGLETPQEMYLGIALHLAMKEKKDVRMEWVRRFYDMLSQIKATMATPTLSNARKPYHQL 222

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSCF+ TVPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++
Sbjct: 223 SSCFIDTVPDSLEGIYRSVDNFAQVSKFGGGMGLYFGKVRATGSSIRGFKGAAGGVIRWI 282

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+      PDL
Sbjct: 283 KLVNDTAVAVDQLGMRQGAAAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPGVCYPDL 342

Query: 489 FMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           F K   +  +  W L  P E+       L D YG+E+E  Y +  +     +    R + 
Sbjct: 343 FWKLAEESLDQDWYLMCPHEIEAVKGYCLEDSYGEEWEERYWDCVKDQRISK----RTVL 398

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----- 596
              + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N S  E     
Sbjct: 399 LKDVVRLILKSAVETGTPFAFNRDIVNRANPNSHKGMIYCSNLCTEIAQNMSPVESVSTE 458

Query: 597 ------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
                               VCNL S+ L      +  + ++    + TAVR LDNVID+
Sbjct: 459 ILNREGDTVIVNTTRPGDFVVCNLASLCLGNIDVTSDSEVEE---IVSTAVRALDNVIDL 515

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + +  AK +N  +R+IGLG+ G+   L    I + S E +  AD+  E I++ AI AS
Sbjct: 516 NFYPLPYAKVTNARYRSIGLGVSGYHHMLAKHRIRWESEEHLAFADQVFERINYAAIRAS 575

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             L  E+G+Y  F+GS W  G              +           WD L  +V   GM
Sbjct: 576 SALGAEKGSYEYFEGSQWQSG--------------EYFKKRGYEGGRWDGLAAQVAAQGM 621

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           RN+  MA+APT++ + + G +  +DP  +  +++   +     V   L            
Sbjct: 622 RNAWLMAVAPTSSTSILSGTTAGLDPVMKRFFLEEKKNSIMPRVAPEL------------ 669

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
               D+                   ++ +A+ ID  + + +A  RQ+ IDQAQS+NLY+ 
Sbjct: 670 ----DISTF---------------WLYKSAYTIDQTYTVRAAGVRQRHIDQAQSVNLYIT 710

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +E + ++L  +Y  AW  G+KT YY+RS+S
Sbjct: 711 NEYTMRQLLNLYILAWEQGVKTIYYVRSQS 740


>gi|296113066|ref|YP_003627004.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella
           catarrhalis RH4]
 gi|295920760|gb|ADG61111.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella
           catarrhalis RH4]
 gi|326562609|gb|EGE12920.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 46P47B1]
 gi|326577114|gb|EGE27008.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis O35E]
          Length = 758

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +
Sbjct: 5   DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI  E P+Y  + AR  +  LR+            A           +     E
Sbjct: 65  IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           +G   + +       +   L + + + RD    Y  ++ +  +Y     +     E PQ 
Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L    
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I               G+G +   +R LG+ I G   +  G IPF K+      +
Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +    + FE  Y  YE   +  +    RK+ A  L+  ML    
Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L ++  +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    +KL+         VR LD ++D   + +  AKK +   R +G+G++ +   L   
Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PID+     
Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V   +     Q       ++ ++  ++G                     
Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 +      QK+IDQ+ S N   D       +   K L      A+  G+KT YY 
Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 735 NTRDGADDAQGDLDD 749


>gi|294637128|ref|ZP_06715437.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089662|gb|EFE22223.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 760

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 199/806 (24%), Positives = 316/806 (39%), Gaps = 71/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY     R +E 
Sbjct: 64  KAAADLISRETPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDHVV-RLVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDRHLLEDFSRDEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +        RKI AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQNEFERLYVQYEQDSRIR----QRKIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC E+ L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEVALPTKPLEDVNDESGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANALTHRTFEAIQYYLLKASHQLAREQGACPWFNETRYAQGILPIDNYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AICAEPL----HYDWETLRADIVRDGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +        ++  L  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLQEAY-----ELLWSLPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K+L      A+ +G+KT YY  
Sbjct: 681 -------LVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R     E +       + +      
Sbjct: 734 TRD--GAEDAQEDLGSTQDDGCESGA 757


>gi|307626228|gb|ADN70532.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UM146]
          Length = 761

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A     ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNPTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|260913957|ref|ZP_05920431.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632044|gb|EEX50221.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 756

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 318/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG L   +  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   ALMVTKRDGHLEPIDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI KE P+Y  + AR  +  LR++                   LY E+  + +  
Sbjct: 64  KAAADLISKESPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-EHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDASLLTDYCREEWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ + A 
Sbjct: 293 SQGGVRGGAATVFYPIWHLEAESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGAD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQTKFEELYLKYEQDPTIRK----RAVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L S    AVR LD ++D   + +  AK+S+   R++G+G++ +   L    
Sbjct: 469 LGKLENLDELESLADLAVRALDALLDYQDYPVRAAKRSSLGRRSLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I ++ + AS+ LA+E G    F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYAKGILPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 ----TLTQEPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ +L  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYETLGE-----NYELLWELPNNDGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYGLKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|255928975|ref|YP_003097287.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4]
 gi|255705261|emb|CAR63250.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4]
          Length = 772

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/831 (24%), Positives = 336/831 (40%), Gaps = 89/831 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +K+    G + + N  ++  +VEEAC GL   VS+  V   +    +DG+   D++  L+
Sbjct: 7   IKVKKRSGAVEALNLDKIHKMVEEACEGLGSGVSASQVEMNSGLQFFDGIETKDIQEILV 66

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + PNY  V AR LL  +R++V    +     +          E+  + + +
Sbjct: 67  RSASDLISLDTPNYQFVAARLLLFAVRKQVFGAGWVNGHPSVF--------EHATKCVSK 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    +       +   + + + ++RD  F Y GL+ + D+Y      +G   E PQ  
Sbjct: 119 GVYDGDILGKYSLEEWSKINSWIDHDRDMLFTYAGLRQVVDKYLVQDRSSGEMYETPQYM 178

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +A+ L        + +    +YN +S       TP +    T   Q +SC L    D
Sbjct: 179 YMMIAVTLFQNYPTETRLEYVKRYYNAISKHKINIPTPIMAGVRTPLRQFASCVLVDSDD 238

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF +            G+G +   +RG+ A I G   +  GVIPFLK    T    
Sbjct: 239 TLDSIFTSDMAIGRYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 298

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF +R   N  
Sbjct: 299 TQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFINNEE 358

Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +LFSP +V  L+D +G   F+  Y  YE   D       R+I A  L   +L    ETG
Sbjct: 359 ISLFSPHDVPGLYDAFGTPGFDDLYRAYEFDPDVP----QRRIGAQELLLALLKERAETG 414

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610
             +I   D CN  S       V+ SNLC EITL +          E A+C L +IN+   
Sbjct: 415 RVYIMNIDHCNEHSSFTDK--VNMSNLCQEITLPTDPLQHIDGDGEIALCILSAINVGKI 472

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D L +    AVR L+ +ID   + +  A+ S    R++G+G +G    L   
Sbjct: 473 NK-----LDDLENLCDLAVRGLEELIDYQDYPVRAAELSTLNRRSLGIGYIGLAHYLAKH 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y  P A ++  +  E   ++ + +S  +A+E+G    F  + + QG+ PID+     
Sbjct: 528 GEHYDDPAAWKLVHDLSESFQYYLLKSSNTVAKEKGKCGYFDRTKYAQGILPIDTYKRDI 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +    R  W+ L+  + T G+R+S   A  P+ + + +   +  I+P    + 
Sbjct: 588 DEFCGTEL----RHDWESLRTSITTHGLRHSTLSAQMPSESSSVVSNATNGIEPPRAYMS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                          GS          LK  +   ++
Sbjct: 644 VKKSKKGPLKQIVP----------------------QYGS----------LKNNYTLLWD 671

Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           + D    I+  +  QK+ DQA S N          +E     +     + +  G KT+YY
Sbjct: 672 MKDNDGYIKVVAAMQKFFDQAISGNWSYNPENYDNNEVPVSVMAGDLLKTYKYGWKTSYY 731

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     ++T      +         +       I    T + +C+ C
Sbjct: 732 ----------QNTYDIKSDEPQLTEERKESIEDLLNQILE--TEEEDCDSC 770


>gi|326575650|gb|EGE25573.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis CO72]
          Length = 758

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +
Sbjct: 5   DTIKVTKRDGRLEPINLDKIHRVIAWAAKDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI  E P+Y  + AR  +  LR+            A           +     E
Sbjct: 65  IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           +G   + +       +   L + + + RD    Y  ++ +  +Y     +     E PQ 
Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L    
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I               G+G +   +R LG+ I G   +  G IPF K+      +
Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +    + FE  Y  YE   +  +    RK+ A  L+  ML    
Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L ++  +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    +KL+         VR LD ++D   + +  AKK +   R +G+G++ +   L   
Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PID+     
Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V   +     Q       ++ ++  ++G                     
Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 +      QK+IDQ+ S N   D       +   K L      A+  G+KT YY 
Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 735 NTRDGADDAQGDLDD 749


>gi|262043284|ref|ZP_06016415.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039383|gb|EEW40523.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 761

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/782 (25%), Positives = 317/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E+
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFS  +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+     
Sbjct: 353 ITLFSLSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D + ++      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 586 DLDGI-VSDPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|2981911|pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 gi|2981913|pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
 gi|2981915|pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC  I L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|2981928|pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 gi|2981930|pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
 gi|2981932|pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC +I L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|197285593|ref|YP_002151465.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus
           mirabilis HI4320]
 gi|227356094|ref|ZP_03840484.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis ATCC 29906]
 gi|194683080|emb|CAR43610.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis HI4320]
 gi|227163739|gb|EEI48651.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus
           mirabilis ATCC 29906]
          Length = 763

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 316/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL++VS   V   +    YDG+  +D+   L+
Sbjct: 4   SLLVTKRDGHKERIDLDKIHRVITWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLV 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++                      ++    +E 
Sbjct: 64  KAAADLISGETPDYQYLAARLAVFNLRKKAYGQFEPPAL-----------YDHVKHLVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   R L E     +   +   + ++RD  F Y  ++ L  +YF    I G   E  Q  
Sbjct: 113 GKYDRHLLEDYTKEEFEQMDKFIVHQRDMNFSYAAVKQLEGKYFVQNRITGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FYN +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YVLVAACLFSRYPKETRMDYIERFYNAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKGQD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEKD----KSIRQKQVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D L    R AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIENLDDLEELARLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPIDTY----K 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              ++  N      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 585 KSLDVLTNEPLHYDWESLRKEIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++  +   +G +                    
Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWQMPSIEGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +    +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQGDLEEVVETADSD 755


>gi|257454183|ref|ZP_05619453.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257448356|gb|EEV23329.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 762

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 75/795 (9%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + +   DG L   +  ++  ++E A  GL +VS   V   ++   YD ++   +   +
Sbjct: 5   EDILVQKRDGRLEKIDLDKIHRVIEWAAEGLDNVSVSQVEISSHIQFYDKITTKSIHETI 64

Query: 203 IFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI    P+Y  + AR  +  LR+                       ++  +  +
Sbjct: 65  IKSAADLISAATPDYQYLAARLAIFHLRKIAFGQFEPPHL-----------FDHVTKLTQ 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           EG     + +     +   L + + + RD +F Y  ++ +  +Y     +     E PQ 
Sbjct: 114 EGRYDAHILQDFSKEEFDILNDYIDHNRDLSFAYAAVKQMEGKYLVQDRVTKQVFESPQF 173

Query: 320 FFMRVAMGLA------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            +M V M L         +  +      FY+  S+F     TP +    T   Q SSC L
Sbjct: 174 LYMLVGMCLFASYDKQYDKAARLDYIKRFYDTTSTFKISLPTPIMSGVRTPSRQFSSCVL 233

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G   +  G IPF K+   
Sbjct: 234 IECDDSLDSINATTSAIVRYVSQRAGIGVNAGRIRALGSPIRGGEAQHTGCIPFYKLFQT 293

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I     +R+
Sbjct: 294 AVKCCSQGGVRGGAATLFYPIWHLEVENLLVLKNNRGVEDNRVRHMDYGVQINKTIYQRL 353

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +N   TLFSP +V  L+D +     EFE  YE YE+     E    R + A  L+  M+
Sbjct: 354 IKNQNVTLFSPSDVPGLYDAFFADQAEFERLYEQYEQD----ESIRKRSVPAQELFSLMM 409

Query: 551 TMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
                TG  ++   D CN  SP    V  +  SNLC EI L +   +      G I L  
Sbjct: 410 QERASTGRIYVQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTQPLDNINDESGEIALCT 469

Query: 610 ---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                       + +       VR LD ++D   + +  AK  +   R +G+G++ +   
Sbjct: 470 LSGINLGEINQLEDIKEPAELIVRALDALLDYQDYPVIAAKNGSMKRRTLGIGVINYAYY 529

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y+ P A+ +   + E + ++ + AS +LA+E+GA  +F  + + QG+ PID+ 
Sbjct: 530 LAKNGTKYSDPTALGLTHRTFEALQYYLLVASNKLAKEQGACPAFGDTTYSQGILPIDTY 589

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +       N   +L W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 590 KADIDAI----CNEPLQLDWESLRHDIKTHGLRNSTLTALMPSETSSQIANATNGIEPPR 645

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
             + VK++  G    V   +                                D LK  + 
Sbjct: 646 GLVSVKASKDGILKQVVPEI--------------------------------DKLKDQYE 673

Query: 847 TAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLK 898
             +++ +    +   +  QK+IDQ+ S N   D    +        +      A+ +G+K
Sbjct: 674 LLWQMPNNKGYLSLVAIMQKFIDQSISANTNYDPTKFEDSRVPMKVMIQDLLMAYKLGVK 733

Query: 899 TTYYLRSRSATSVEK 913
           T YY  +R   +  +
Sbjct: 734 TLYYHNTRDGANDAQ 748


>gi|226327850|ref|ZP_03803368.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198]
 gi|225203554|gb|EEG85908.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198]
          Length = 763

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 191/802 (23%), Positives = 316/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL++VS   V   +    YDG+  +D+   L+
Sbjct: 4   SLLVTKRDGHKERIDLDKIHRVIAWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLV 63

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI    P+Y  + AR  +  LR++                      ++  + ++ 
Sbjct: 64  KAAADLISGDTPDYQYLAARLAVFNLRKKAYGQFEPPKL-----------YDHVKKLVDL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   R L E     +   + N + ++RD  F Y  ++ L  +YF    I G   E  Q  
Sbjct: 113 GKYDRHLLEDYTQEEFEQMDNFIVHQRDMNFSYAAVKQLEGKYFVQNRITGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FYN +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YVLVAACLFSRYPQATRMDYIERFYNAISTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKGQD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEKD----KSIRQKQVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D L    R AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIENLDDLEELARLAVRSLDALLDYQDYPILAAKQGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPIDTY----K 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              ++         W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 585 KSLDVLTKEPLHYDWEGLRKDIKEHGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++  +   +G +                    
Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWQMPSIEGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +    +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGADDVQGDLEEVVETEDSD 755


>gi|168749637|ref|ZP_02774659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168754981|ref|ZP_02779988.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168767854|ref|ZP_02792861.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168773048|ref|ZP_02798055.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168780083|ref|ZP_02805090.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168798398|ref|ZP_02823405.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195935608|ref|ZP_03080990.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
 gi|208806525|ref|ZP_03248862.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208814448|ref|ZP_03255777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820413|ref|ZP_03260733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398582|ref|YP_002271640.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|254794125|ref|YP_003078962.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. TW14359]
 gi|187771171|gb|EDU35015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016054|gb|EDU54176.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002029|gb|EDU71015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357729|gb|EDU76148.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362988|gb|EDU81407.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189378969|gb|EDU97385.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208726326|gb|EDZ75927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208735725|gb|EDZ84412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740536|gb|EDZ88218.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159982|gb|ACI37415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209765532|gb|ACI81078.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|209765536|gb|ACI81080.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia
           coli]
 gi|254593525|gb|ACT72886.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|326339581|gb|EGD63392.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1125]
          Length = 761

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKHFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|160875519|ref|YP_001554835.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS195]
 gi|160861041|gb|ABX49575.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS195]
 gi|315267706|gb|ADT94559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS678]
          Length = 762

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/806 (23%), Positives = 324/806 (40%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +    G   + + +++  ++  A  GL++VS   V   ++   +DG+    +   +I
Sbjct: 4   TMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPALYT-----------HVTKLVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 GKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  + K   +FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G +PF K       + 
Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ +   +    + I AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       +  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALN 468

Query: 615 QFDYDKL---ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +L         AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    
Sbjct: 469 LGSIKELSDIEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A E+   + E I F+ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 MKYSDGSANELTHRTFEAIQFYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +     L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KICAEPL----HLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KS+  G    V     + LK        ++  +  +DG +                    
Sbjct: 645 KSSKDGQLKQVVPDF-DTLKD----SYELLWKMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   + L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R   S     +  ++ + +      
Sbjct: 734 TRDGASDSHDDITNLEKEDDGCAGGA 759


>gi|332534564|ref|ZP_08410399.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035984|gb|EGI72463.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 760

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/790 (24%), Positives = 313/790 (39%), Gaps = 71/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++                      ++  + + +
Sbjct: 64  KAAADQISKESPDYQYLAARLAVFHLRKKAYGQFEPPRL-----------FDHVTKMVGD 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 L     + +L  L   L + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 KRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAASLFSDYPRETRTDYIKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+HI        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   ++       L   R+ ++  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EF+  Y  YE+     E    ++I A+ L+         
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQAEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LDN++D   + +  AK +    R +G+G++ +   L    
Sbjct: 469 LGAIESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ P D+     +
Sbjct: 529 KRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L WD L+  +K  GMRNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 KI----CDEPLHLDWDTLRASIKEHGMRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYER-LKDQ----YELLWDIPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY-- 902
                       QK++DQ  S N   D       +   + L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQTISANTNYDPNKFEGGKVPMQVLLKDLLSAYKLGVKTLYYHN 733

Query: 903 LRSRSATSVE 912
            R  ++ S E
Sbjct: 734 TRDGASDSQE 743


>gi|300717618|ref|YP_003742421.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia
           billingiae Eb661]
 gi|299063454|emb|CAX60574.1| Ribonucleoside-diphosphate reductase alpha chain [Erwinia
           billingiae Eb661]
          Length = 761

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/782 (25%), Positives = 316/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GLQ+VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETVI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++                   LY +   R ++ 
Sbjct: 64  KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDQ-VKRMVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   R L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDRHLLEDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRDTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE +    +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYENEPSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLLDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ +   L    
Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A ++   + E I F+ + AS ELA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANDLTHRTFEAIQFYLLKASNELAKEQGACPWFNETTYAQGIMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +     L WD L++++KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AISSEPL----HLDWDGLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERL-----KDSYELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D           K+L      A+  G+KT YY  
Sbjct: 681 -------LVGLMQKFIDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|163748932|ref|ZP_02156183.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella
           benthica KT99]
 gi|161331308|gb|EDQ02196.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella
           benthica KT99]
          Length = 762

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 192/830 (23%), Positives = 326/830 (39%), Gaps = 95/830 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+    G   + + +++  ++  A   L++VS   V   ++   +DG+    +   +I 
Sbjct: 5   MKVTKRSGKRENIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++                   LY       ++ G
Sbjct: 65  AAADLISLEAPDYQFLSARLAIFHLRKKAFGQFEPPA----------LYDHVVK-LVKAG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + + E     +L  L   + + RD +F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDKHILEDYSREELDILDTYVDHWRDMSFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGGMI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EFE  Y  YE  A   +     +I A  L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFADQDEFERLYLQYEADASVRKT----QIKATELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       +  SNLC EI L +          G I L    A N 
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L      AVR LD+++D   + I+ A+KS+   R +G+G++ F   L    +
Sbjct: 470 GAIKDLSELEPLADLAVRALDSLLDYQDYPIKAARKSSMNRRTLGIGVINFAYYLAKEGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  I   + E I ++ + AS+ LA+E GA  SF  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNITHRTFEAIQYYLLKASMNLAKEHGACPSFHETTYSKGILPIDTYKRSLDK 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +    + W+ L++ +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 I----CDEPLHMDWETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           S+  G    V                 ++  +  +DG +                     
Sbjct: 646 SSKDGQLKQVVPDFEK-----YQHSYELLWQMPNNDGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N          ++   + L      A+ +GLKT YY   
Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPGRFEGNKVPMQVLLKDLLNAYKLGLKTLYY--- 731

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
                   +T  G   +++++   +                D +CE   C
Sbjct: 732 -------HNTRDGASDQMDSIISVEKE--------------DEDCEGGAC 760


>gi|322514735|ref|ZP_08067761.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322119330|gb|EFX91446.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 756

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/800 (23%), Positives = 308/800 (38%), Gaps = 73/800 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +    G    F+  ++  ++  A  GLQ+VS   V    +   Y G+  +D+   
Sbjct: 2   QKTLMVTKRSGQQEPFDLDKIHRVITWAAEGLQNVSLSQVELSAHIQFYQGIRTADIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI  E P+Y  + AR  +  LR++                       +  + +
Sbjct: 62  IIKAAADLISTETPDYQYLAARLAMFHLRKKAYGDFTPPHLFT-----------HIKKLV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
             G   + L     + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 ALGKYDQALLTDYTEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ VA  L     +  +      FY+  SSF     TP +    T   Q SSC L   
Sbjct: 171 FLYLLVAACLFSKYPKATRLDYVKRFYDATSSFKISLPTPIMSGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQSAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++VE  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVYYPLWHLEVESLLVLKNNRGIEDNRCRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVDGLYEAFFAEQDKFEQLYLQYEQDPTIRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             TG  +I   D CN        V  +  SNLC EI L +          G I L     
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+        VR LD ++D   + +E AK +    R++G+G++ +   L  
Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVEAAKHAALARRSLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PID+    
Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDNYKKE 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  ++  G+RNS   ++ P+ T + I   +  I+P    +
Sbjct: 587 LDN----LTQEPLHYDWESLRAEIQQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            VK++  G    V                                    + L+  +   +
Sbjct: 643 SVKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670

Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901
           +I D    ++     QK+IDQA S N   D       +   K+L      A+  GLKT Y
Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730

Query: 902 YLRSRSATSVEKSTLKGVDG 921
           Y  +R     E S     DG
Sbjct: 731 YQNTRD--GAEDSQQDLNDG 748



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          K + V KR+G    FD  KI R I  A      V       S  +Q      T      +
Sbjct: 3  KTLMVTKRSGQQEPFDLDKIHRVITWAAEGLQNVSLSQVELSAHIQFYQGIRTADIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|51595598|ref|YP_069789.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 32953]
 gi|51588880|emb|CAH20494.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia
           pseudotuberculosis IP 32953]
          Length = 762

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 192/806 (23%), Positives = 316/806 (39%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPTLFAHVSKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSGYPRESRLDYIKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----SNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R      +  ++      +      
Sbjct: 734 TRDGADDVQEDIQSSLPGDDDCEGGA 759


>gi|22126851|ref|NP_670274.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           KIM 10]
 gi|45440762|ref|NP_992301.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108806925|ref|YP_650841.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Antiqua]
 gi|108812923|ref|YP_648690.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Nepal516]
 gi|145599748|ref|YP_001163824.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|149366795|ref|ZP_01888829.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CA88-4125]
 gi|153949921|ref|YP_001401733.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420851|ref|YP_001605846.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Angola]
 gi|165924688|ref|ZP_02220520.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938388|ref|ZP_02226946.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166009893|ref|ZP_02230791.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211738|ref|ZP_02237773.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400331|ref|ZP_02305844.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419736|ref|ZP_02311489.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423852|ref|ZP_02315605.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|170025072|ref|YP_001721577.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis YPIII]
 gi|186894661|ref|YP_001871773.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928373|ref|YP_002346248.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           CO92]
 gi|229841158|ref|ZP_04461317.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843263|ref|ZP_04463409.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229894121|ref|ZP_04509307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Pestoides A]
 gi|229903353|ref|ZP_04518466.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Nepal516]
 gi|270487163|ref|ZP_06204237.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294503228|ref|YP_003567290.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|21959883|gb|AAM86525.1|AE013899_2 ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Yersinia
           pestis KIM 10]
 gi|45435620|gb|AAS61178.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108776571|gb|ABG19090.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Nepal516]
 gi|108778838|gb|ABG12896.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Antiqua]
 gi|115346984|emb|CAL19875.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CO92]
 gi|145211444|gb|ABP40851.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Pestoides F]
 gi|149291169|gb|EDM41244.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           CA88-4125]
 gi|152961416|gb|ABS48877.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353666|gb|ABX87614.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis Angola]
 gi|165913766|gb|EDR32385.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165923748|gb|EDR40880.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165991289|gb|EDR43590.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166207509|gb|EDR51989.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166962477|gb|EDR58498.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050280|gb|EDR61688.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056701|gb|EDR66464.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169751606|gb|ACA69124.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186697687|gb|ACC88316.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679123|gb|EEO75226.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Nepal516]
 gi|229689610|gb|EEO81671.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697524|gb|EEO87571.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704006|gb|EEO91019.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           Pestoides A]
 gi|262361267|gb|ACY57988.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D106004]
 gi|262365196|gb|ACY61753.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D182038]
 gi|270335667|gb|EFA46444.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294353687|gb|ADE64028.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|320015944|gb|ADV99515.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 762

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 192/806 (23%), Positives = 316/806 (39%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPTLFAHVSKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSGYPRETRLDYIKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----SNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R      +  ++      +      
Sbjct: 734 TRDGADDVQEDIQSSLPGDDDCEGGA 759


>gi|157961885|ref|YP_001501919.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           pealeana ATCC 700345]
 gi|157846885|gb|ABV87384.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           pealeana ATCC 700345]
          Length = 762

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/810 (24%), Positives = 333/810 (41%), Gaps = 79/810 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   + +  ++  ++E A  GL +VS   V   ++   +DG++   +   +I 
Sbjct: 5   MTVTKRSGERETIDLDKIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++                   LY       IE G
Sbjct: 65  AAADLISPESPDYQFLSARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LIELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + + E     ++  L + + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDQHILEDYSQEEIDTLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + +   +FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFAKYPKETRLQYVKDFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G D  R   ++    I  +  +R+ Q    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKVMYQRLIQGGMI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  ++D +    +EFE  Y  YE      +    ++I AV L+  M+     T
Sbjct: 354 SLFSPSDVPGMYDAFFEDQEEFERLYLKYEADDSIRK----KQIKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP       V  SNLC EI L +           E A+C L ++NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         ++L      AVR LDN++D   + I  A+K++   R +G+G++ F + L
Sbjct: 470 GAIKK-----LEELEPLADLAVRALDNLLDYQDYPIISAQKASMNRRTLGIGVINFANYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  I  ++ E I F+ + AS++LA+E+GA  +F  + + +G+ PID+  
Sbjct: 525 AKEGVRYSDGSANGITHKTFEAIQFYLLKASMKLAKEQGACPAFHETTYSKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       +    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 RDLDKI----CDEPLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V             +   ++  +  +DG +                
Sbjct: 641 LISVKASKDGQLKQVVPDFEK-----YQYSYELLWQMPNNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTT 900
                           QK++DQ+ S N   D           K L      A+  G+KT 
Sbjct: 681 -----------LVGLMQKFVDQSISANTNYDPSRFEGGRVPMKVLLKDLLTAYKYGVKTL 729

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           YY  +R   S     +  ++ + ++     
Sbjct: 730 YYHNTRDGASDSHDDITAIEKEDDSCAGGA 759


>gi|58532962|ref|YP_195185.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
 gi|58331429|emb|CAF34215.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
          Length = 776

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/831 (24%), Positives = 333/831 (40%), Gaps = 74/831 (8%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
                 + +   DG++   N +++  +VEEAC  L  VS+  V   +    +DG++  ++
Sbjct: 2   EESMTTINVKKRDGSIEPLNLEKVHKMVEEACEDLAGVSASQVEMHSGIQFHDGITTENI 61

Query: 199 ETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  LI S+  LI    PNY  V AR LL  LR++V        +      M   Y     
Sbjct: 62  QEILIRSASDLISLDNPNYQYVAARLLLFGLRKQVFN------KNVWKDGMPSAYDVALY 115

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIE 315
                 V    L +   D D V + N + ++RD+ F Y GL+ + D+Y      +G   E
Sbjct: 116 NVTINKVYDEDLLDKYSDEDWVKVNNMIDHDRDYLFTYAGLRQVVDKYLVQDRSSGEIYE 175

Query: 316 MPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
            PQ  ++ +AM L      +++      +YN +S       TP +    T   Q +SC L
Sbjct: 176 TPQYMYLFIAMTLFADYPISQRLDYVRRYYNAISKHKINIPTPIMAGVRTTLRQFASCVL 235

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  IF +            G+G +   +RG+ + I G   K  GVIPFLK    
Sbjct: 236 IDSDDTLDSIFTSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVKHTGVIPFLKKFEA 295

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           T     Q G R G+   +   WH ++E+ + L+ N G +  R   ++ +  I  LF +R 
Sbjct: 296 TVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERF 355

Query: 494 TQNAGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             N   +LFSP +V  L+D +G   F+  Y  YER          + I A  L+  +L  
Sbjct: 356 ISNGEISLFSPHDVPGLYDAFGTDRFDELYVGYERDTSVPR----KTIGAQELFLDLLKE 411

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--LGSINLLAH 610
             ETG  ++   D CN  S  +    V+ SNLC EITL +        N  +    L A 
Sbjct: 412 RAETGRVYVMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLHQIDGNGEIALCILSAI 469

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            A    + D+L      AVR L+ +ID   + ++ A+ S    R++G+G +G    L   
Sbjct: 470 NAGKLKNLDELEELCDLAVRGLEELIDYQNYPVKAAEVSTKNRRSLGIGYIGLAHYLAKQ 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y  P+A ++  E  E   F+ + +S E+A+E+GA   F  + +  G+ PID+     
Sbjct: 530 GVKYDDPQAWQLVHELTESFQFYLLKSSNEIAKEKGACGYFDRTKYSDGILPIDTYKSDV 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +       W+ L+  ++T G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 590 DEI----VPNKLNHDWETLRSEIRTFGLRHSTLSAQMPSESSSVVSNETNGIEPPRDYLS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                                      LK  +   ++
Sbjct: 646 VKKSKKGPLKQIVPQY--------------------------------QTLKNNYTLLWD 673

Query: 851 IDPM-WLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           +      I   +  QK+ DQA S N          +E     +       +  G KT+YY
Sbjct: 674 MPNNTGYINVVAVMQKFFDQAISGNWSYNPENYPNNEVPVSVMAGDLLNTYKYGWKTSYY 733

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                     ++T                +       I ++ T +  C+ C
Sbjct: 734 ----------QNTYDSKTDDFEDKQEEKKSLEDLLNDILNTNTQEESCDSC 774


>gi|54309623|ref|YP_130643.1| ribonucleotide-diphosphate reductase subunit alpha [Photobacterium
           profundum SS9]
 gi|46914061|emb|CAG20841.1| putative ribonucleoside-diphosphate reductase,alpha subunit
           [Photobacterium profundum SS9]
          Length = 753

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/800 (23%), Positives = 314/800 (39%), Gaps = 70/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   +    ++  ++  A  GL +VS   V  +++   YDG+  +D+   +I
Sbjct: 4   QLTVTKRDGRQETIELDKIHRVINWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++           A           +    + +
Sbjct: 64  KAAADLISEESPDYQYLAARLAIFNLRKKAYGQFEPPTLFA-----------HVTNLVNK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKGQN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ A   +      I A+ L+  ++     
Sbjct: 353 ISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASIKK----ESIKAIELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L       VR LD ++D   + +  A++S    R +G+G++ +   L    
Sbjct: 469 LGAIETLDDLEELADLTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  I  ++ E I ++ + ASV LA+E+GA  +F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNITHQTFEAIQYYLLKASVGLAKEQGACPAFHETTYSKGILPIDTYKKAID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 DVCSEEL----HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYSK-----YKDNYELLWNIGSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +     L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPSKQANGKVPMTLLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVDGKL 923
           +R  A+  +      V  K+
Sbjct: 734 TRDGASDAQDDAEDCVSCKI 753


>gi|217973231|ref|YP_002357982.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           baltica OS223]
 gi|217498366|gb|ACK46559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           baltica OS223]
          Length = 762

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/806 (23%), Positives = 324/806 (40%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +    G   + + +++  ++  A  GL++VS   V   ++   +DG+    +   +I
Sbjct: 4   TMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPALYT-----------HVTKLVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     + +     +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 GKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  + K   +FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G +PF K       + 
Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE+ +   +    + I AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSCIRK----KTIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       +  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALN 468

Query: 615 QFDYDKL---ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +L         AVR LDN++D   + I+ A+ ++   R +G+G++ F + L    
Sbjct: 469 LGSIKELSDIEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A E+   + E I ++ + AS+ LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 MKYSDGSANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +     L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 KICAEPL----HLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KS+  G    V     + LK        ++  +  +DG +                    
Sbjct: 645 KSSKDGQLKQVVPDF-DTLKD----SYELLWKMPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   + L      A+ +G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R   S     +  ++ + +      
Sbjct: 734 TRDGASDSHDDITNLEKEDDGCAGGA 759


>gi|90409250|ref|ZP_01217355.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas
           sp. CNPT3]
 gi|90309648|gb|EAS37828.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas
           sp. CNPT3]
          Length = 757

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 201/796 (25%), Positives = 325/796 (40%), Gaps = 69/796 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ +   +G+    + +++  ++  A  GL++VS   +   ++   YDG+  +D+   +I
Sbjct: 4   KIFVTKRNGSTECLDLEKIHRVITWASEGLENVSVSQIELNSHIQFYDGIRTNDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + A   +  LR++                      E+  + + +
Sbjct: 64  KAAADLISEDSPDYQYLAAHLAIFHLRKKAYRRFTPPSV-----------FEHVSKMVSK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E     +   +   + ++RD  F Y  ++ L  +Y     + G   E PQ  
Sbjct: 113 GKYDAHLLEDYTKKEFEKMEKFIDHKRDLTFSYAAVKQLEGKYLVQNRVTGEIYESPQFL 172

Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAACLFSNYDKKIRLDYVQRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIEADD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I  A            G+G +   +R LG+HI G      G IPF K       + 
Sbjct: 233 SLDSINAAASSIVKYVSQRAGIGINAGRIRALGSHIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  LF +R+     
Sbjct: 293 SQGGVRGGAATIFYPLWHLEVESLLVLKNNRGIDSNRVRHLDYGVQLSRLFYQRLIDKKD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +      ISAV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFERLYTLYEGD----DSIRQNSISAVNLFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       +  SNLC EI L +      +   G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLRHIMDEEGEIALCTLSALN 468

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LDN++D   + I  AK S+   R +G+G++ +   L    
Sbjct: 469 LGAIKSLDELEPLSELAVRALDNLLDYQDYPIIAAKNSSMARRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I F+ + AS +LA+ERGA   F  + + QG+ PID+     +
Sbjct: 529 VKYSDGSANNLTHRTFEAIQFYLLKASNKLAKERGACPKFNETRYSQGILPIDTYKKSID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L W+ L+K +   G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 SI----CDEKYHLDWETLRKDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGFISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++ D+  + G                      
Sbjct: 645 KASKDGILKQVVPEFEKYRE-----NYELLWDIPNNKG---------------------- 677

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                I      QK+IDQA S N          ++ S   L      A+ MGLKT YY  
Sbjct: 678 ----YINLVGIMQKFIDQAISANTNYDPKRFPNEKVSMTTLLGDLLTAYKMGLKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVD 920
           +R   S E    +  D
Sbjct: 734 TRDGASDENVIAETDD 749


>gi|293415527|ref|ZP_06658170.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli B185]
 gi|291433175|gb|EFF06154.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli B185]
          Length = 761

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +  G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VGMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|326782197|ref|YP_004322598.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
 gi|310004404|gb|ADO98797.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
          Length = 766

 Score =  443 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 204/798 (25%), Positives = 335/798 (41%), Gaps = 82/798 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G   S N +++  +VE AC GL  VS+  V   +    +DG+  S ++  L+ 
Sbjct: 5   ITVIKRNGDKDSLNLEKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIETSQIQEILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY  V +R LL  LR+++            H+E      ++  +  +  
Sbjct: 65  SASDLISLETPNYQYVASRLLLFDLRKQL----------NDHYEDHPFILDHVKKCADLD 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
           V  + + E   + +   + + + Y RD+ F Y G++ + D+Y      +G   E PQ  +
Sbjct: 115 VYDKTIIEKYTEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A  L     +  +      +YN +S       TP +    T   Q +SC L  V D 
Sbjct: 175 IMIATTLFQQYPKETRLDYVRRYYNAISKHKINIPTPVMAGVRTPLRQFASCVLVDVDDT 234

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I G   +  GVIPFLK    T     
Sbjct: 235 LDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRCCT 294

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF  R  QN   
Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMQNKDI 354

Query: 500 TLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +LFSP +V  L+D +G   F+  YE YE      +    + I A  L+  +L    ETG 
Sbjct: 355 SLFSPHDVPRLYDAFGMPEFDALYEQYEAD----DSVPRKTIPARELFNSLLKERSETGR 410

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------ETAVCNLGSINLLAH 610
            +I   D CN  S       V+ SNLC EITL +           E A+C L +IN+   
Sbjct: 411 IYIMNIDHCNSHSSFLDK--VNMSNLCQEITLPTDPINHIDDEGGEIALCILSAINVGKI 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              +Q D          AVR L+ +ID   + ++ AK+S    R++G+G +G    L   
Sbjct: 469 TQLDQMDE-----LCDLAVRALEELIDYMQYPVDAAKRSTLARRSLGIGYIGLAHYLAKN 523

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y  PEA ++  +  E   +H + AS ELA+ERGA   F+ + +  GV PID+     
Sbjct: 524 GVKYDDPEAWKLVHDLTESFQYHLLKASNELAKERGACEGFRHTKYSNGVLPIDTYKKEV 583

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +       W  L+  +   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 584 DE----LVENKLNYDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDFLS 639

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +                                      LK  +   ++
Sbjct: 640 VKKSKKGPLKQIVPGY--------------------------------PHLKNNYTLLWD 667

Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           + D    I+  +  QK+ DQA S N          +E     +     + +  G KT+YY
Sbjct: 668 MKDNSGYIKVTAVIQKFFDQAISGNWSYNPQNYPNNEVPMSVMTKDLIETYKYGWKTSYY 727

Query: 903 LRS---RSATSVEKSTLK 917
             +   +S   VE + + 
Sbjct: 728 QNTYDAKSDLDVEDTKVS 745


>gi|326570478|gb|EGE20518.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC8]
          Length = 758

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 185/795 (23%), Positives = 315/795 (39%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +
Sbjct: 5   DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI  E P+Y  + AR  +  LR+            A           +     E
Sbjct: 65  IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           +G   + +       +   L + + + RD    Y  ++ +  +Y     +     E PQ 
Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FF--MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            +  M + +     + ++      FY+  S+F+    TP +    T   Q SSC L    
Sbjct: 174 LYVLMGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I               G+G +   +R LG+ I G   +  G IPF K+      +
Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +    + FE  Y  YE   +  +    RK+ A  L+  ML    
Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L ++  +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    +KL+         VR LD ++D   + +  AKK +   R +G+G++ +   L   
Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PID+     
Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V   +     Q       ++ ++  ++G                     
Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 +      QK+IDQ+ S N   D       +   K L      A+  G+KT YY 
Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 735 NTRDGADDAQGDLDD 749


>gi|157144814|ref|YP_001452133.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter
           koseri ATCC BAA-895]
 gi|157082019|gb|ABV11697.1| hypothetical protein CKO_00541 [Citrobacter koseri ATCC BAA-895]
          Length = 761

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 197/783 (25%), Positives = 316/783 (40%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGEFEPPA----------LYDHVVKM-VEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ +   L    
Sbjct: 469 LGAINSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AIA----NEALHYNWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGVLRQVVPDY--------------------------------EGLKDRYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQA S N   D       +   ++L      A+  G+KT YY 
Sbjct: 673 PSNDGYLQLVGIMQKFIDQAISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYH 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|326560442|gb|EGE10824.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis 7169]
 gi|326565823|gb|EGE15985.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella
           catarrhalis BC1]
          Length = 758

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +K+   DG L   N  ++  ++  A   L +VS   V  +++   Y+G+   D+   +
Sbjct: 5   DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I ++  LI  E P+Y  + AR  +  LR+            A           +     E
Sbjct: 65  IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
           +G   + +       +   L + + + RD    Y  ++ +  +Y     +     E PQ 
Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V M L     + ++      FY+  S+F+    TP +    T   Q SSC L    
Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I               G+G +   +R LG+ I G   +  G IPF K+      +
Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L++ +    + FE  Y  YE   +  +    RK+ A  L+  ML    
Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L ++  +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    +KL+         VR LD ++D   + +  AKK +   R +G+G++ +   L   
Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y+   A+ +   + E + ++ + AS +LA+E+ A   F  + + QG+ PID+     
Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V   +     Q       ++ ++  ++G                     
Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 +      QK+IDQ+ S N   D       +   K L      A+  G+KT YY 
Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 735 NTRDGADDAQGDLDD 749


>gi|150015086|ref|YP_001307340.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901551|gb|ABR32384.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 743

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 235/780 (30%), Positives = 372/780 (47%), Gaps = 93/780 (11%)

Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLR 229
            GL       +L      +   +++ ++  +LI  +  L    EPN+  V AR    +L 
Sbjct: 19  EGLYTED--KLLDALNPIVRKDMNKREIRNSLIQVALELTTDMEPNWQYVAARAYTYELY 76

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
             V ++   +  K  + +    Y E+     E G+    + ++    D++ L  D+K ER
Sbjct: 77  DRVRSSRNLEDDKNLYQD----YYEFIESLTERGLYGEYILKNYSREDILELEKDIKPER 132

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
           DF F Y G+ +L  RY +   N S IE+PQ  FM +AM LA+ E    +   A  FY++L
Sbjct: 133 DFLFNYSGINLLASRYLVQDYNRSPIELPQQMFMGIAMHLAIPEKEENRVYWAKRFYDVL 192

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           SS     +TPT+ N+     QLSSCF+ +V D L GI+ +L   A ++K+ GG+G     
Sbjct: 193 SSLKATMATPTMSNARKPFYQLSSCFIDSVEDSLEGIYKSLDNFAKVSKFGGGMGIYMGK 252

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R LG+ I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL +R
Sbjct: 253 IRALGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIR 312

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL-----HDLYGKEFE 519
            N GDDR++ HD+      PDLF +    +    W +  P E+ ++      D YG+++E
Sbjct: 313 TNNGDDRKKAHDVFPGICYPDLFWRLAENDIDANWHMMCPHEIKNIKGYALEDFYGEQWE 372

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
             Y          E    R +S   L R ++    ETG P+  ++D  N  +P +H G++
Sbjct: 373 EKYYECV----SDERIEKRVMSVKDLVRLIIKSAVETGAPFAFYRDMTNKMNPNKHNGMI 428

Query: 580 HSSNLCTEITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQF 616
           +SSNLCTEI  N S                         +  VCNL S+ L         
Sbjct: 429 YSSNLCTEIMQNMSPMKIQKSQILSDKDEYAVVEKIIPGDFVVCNLSSVVLGNIDV---C 485

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           + +++   + T +R +DNVID+N +++  A+ +N  +RAIGLG  G+   L    I +  
Sbjct: 486 NDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAIGLGTSGYHHMLVNNKIHWTE 545

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            E     D+  E I+++AI AS+ +++E+G Y  FKGS WD G              +  
Sbjct: 546 EEHKSFVDKIYEKINYYAIKASMNISKEKGFYELFKGSDWDTG--------------EYF 591

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   +   W+ELK+ V   G RN   +A+AP  + A I G ++ IDP     Y++    
Sbjct: 592 RLRNYNSAKWNELKELVHEFGTRNGYLIAVAPNGSTATIAGTTEGIDPIMARFYLEEKKG 651

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
                    L                                +D    + +A+ I+ MW 
Sbjct: 652 SIIPKTAPNL-------------------------------SEDNYWYYNSAYNIEQMWC 680

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           ++    RQ+ IDQ QS NLY+    + +++  +Y +A   G+K+ YY+RS+S    E  T
Sbjct: 681 VKMNGIRQRHIDQGQSFNLYITSSYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTECET 740


>gi|261822456|ref|YP_003260562.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           wasabiae WPP163]
 gi|261606469|gb|ACX88955.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           wasabiae WPP163]
          Length = 761

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/790 (24%), Positives = 312/790 (39%), Gaps = 71/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I
Sbjct: 4   SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKSSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++               +M  L           
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGEE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFANQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   +   V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I+ A++     R +G+G++ F   L    
Sbjct: 469 LGAINSLDDLEDLATLAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 AI----CNEPLHLDWETLRNDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D           K+L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGVMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQ 732

Query: 904 RSRSATSVEK 913
            +R      +
Sbjct: 733 NTRDGAEDVQ 742


>gi|94676899|ref|YP_588830.1| ribonucleotide-diphosphate reductase subunit alpha [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94220049|gb|ABF14208.1| ribonucleoside-diphosphate reductase, alpha subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 760

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/798 (24%), Positives = 322/798 (40%), Gaps = 71/798 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  ++  A  GL++VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRKEPINLDKIHRVINWAADGLENVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++   T                  ++  R ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAVLHLRKKAYGTFEPPTL-----------YDHVSRLVKM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDQHLLKDYSFEEFTQMDKFINHWRDMDFAYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L      T +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSSYPRTNRLDYIRRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R +G+ I G      G IPF K       + 
Sbjct: 233 SLNSINATSSAIVKYVSRRAGIGINAGRIRAIGSQIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+  N  
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGIETNRVRYMDYGVQINKLMYQRLVNNDQ 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     +FE  Y  YE+     +    R I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQNKFEQLYCQYEKDVSIRK----RSIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  ++   D CN  SP   +V  +  SNLC EI L +   E      G I L    A N
Sbjct: 409 TGRIYVQHVDHCNNHSPFDVNVAPIRQSNLCLEIILPTKPIEDINEENGEIALCTLSALN 468

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D        AVR LD ++D   + +  A++     R +G+G++ +   L    
Sbjct: 469 LGTINSLDDFEELTMLAVRALDALLDYQSYPLTSAQRGALNRRPLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS +LA+ERGA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNKLAKERGACPWFHETTYAQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 ++      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 SI----VSEPLHYDWESLRKDIKKSGLRNSTLSAMMPSETSSQISNATNGIEPPRGHVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++ +G    V    V             + D+  ++G +                    
Sbjct: 645 KASKNGILRQVVPESVRL-----HNAYEFLWDMPNNNGYLH------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL- 903
                       QK++DQ+ S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGVMQKFVDQSISANTNYDPSRYPYGKVPMKQLLKDLLTAYKFGIKTLYYQN 733

Query: 904 -RSRSATSVEKSTLKGVD 920
            R  +  + E   +   +
Sbjct: 734 TRDGAKETQEDIQVTQQE 751


>gi|294140835|ref|YP_003556813.1| ribonucleoside-diphosphate reductase subunit alpha [Shewanella
           violacea DSS12]
 gi|293327304|dbj|BAJ02035.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           violacea DSS12]
          Length = 762

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/796 (23%), Positives = 320/796 (40%), Gaps = 79/796 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K+    G   + + +++  ++  A   L++VS   V   ++   +DG+    +   +I 
Sbjct: 5   MKVTKRSGERETIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISPEAPDYQFLSARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LVESG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + + E     +L  L   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDQHILEDFSREELDILDGYVDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGGMI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EFE  Y  YE      +     +I A  L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEADNSVRKT----QIKATELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP       +  SNLC EI L +           E A+C L ++NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                    D  +L      AVR LDN++D   + I  A++S+   R +G+G++ F + L
Sbjct: 470 GKIK-----DLSELEPLADLAVRALDNLLDYQDYPIIAARQSSMNRRTLGIGVINFANYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  I  ++ E I ++ + AS+ LA+E+G    F  + + +GV PID+  
Sbjct: 525 AKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEKGPCPLFHETTYSKGVLPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       +    + W+ L++ +   G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 RSLDKI----CDEPLHMDWETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VKS+  G    V                 ++  +  +DG I                
Sbjct: 641 LISVKSSKDGQLKQVVPDFEK-----YQHSYELLWQMPNNDGYIQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
                           QK++DQA S N          ++   + L      A+ +GLKT 
Sbjct: 681 -----------LVGLMQKFVDQAISANTNYDPSRFEGNKVPMQVLLKDLLNAYKLGLKTL 729

Query: 901 YYLRSRSATSVEKSTL 916
           YY  +R   S +  ++
Sbjct: 730 YYHNTRDGASDQLDSI 745


>gi|152997007|ref|YP_001341842.1| ribonucleotide-diphosphate reductase subunit alpha [Marinomonas sp.
           MWYL1]
 gi|150837931|gb|ABR71907.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas
           sp. MWYL1]
          Length = 754

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 186/797 (23%), Positives = 318/797 (39%), Gaps = 69/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +GT  + N +++  ++  A  GL +VS   V  +     ++G+  +D+   LI
Sbjct: 3   TLTVTKRNGTTENINLEKIHKVIAWAAEGLDNVSVSQVELKARIQFFEGIRTTDIHETLI 62

Query: 204 FSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +  P+Y  + AR  +  LR++                      ++    +E+
Sbjct: 63  KSAADLISESTPDYQYLAARLAIFHLRKKAFGDFEPPHL-----------YKHVKNLVEQ 111

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 L E   + D   L   L + RD  F Y  ++ L  +Y     + G+  E PQ  
Sbjct: 112 KRYDAQLLEKYTEEDFNELNTFLDHSRDMDFSYAAVKQLEGKYLVQNRVTGAIYESPQFI 171

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     + E+      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 172 YILVAACLFAEYDKKERLNLIRRFYDAVSKFKISLPTPIMSGIRTPTRQFSSCVLIECGD 231

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 232 SLDSINATSSAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 291

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +   
Sbjct: 292 SQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKGGN 351

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EF+  Y  YE+     +    + I A  L+    +    
Sbjct: 352 ITLFSPSDVPGLYDAFFADQEEFDRLYTMYEQDPSIRK----QTIKATELFTLFASERAS 407

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L +    +     G I L       
Sbjct: 408 TGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLNSIDDKEGEIALCTLSAFN 467

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       VR LD+++D   + I  A+++    R +G+G++ +   L    
Sbjct: 468 LGALENLDELEELAELIVRALDSLLDYQNYPIPAAQRATELRRTLGVGVINYAYYLAKNG 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A E+  ++ E I +  + AS +LA+E G   +F  + + +G+ PIDS     +
Sbjct: 528 VKYSDGSANELTHKTFEAIQYFLLKASNKLAKEFGPCLAFNETTYSKGILPIDSYKKEID 587

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 ++      W+ L+  + T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 588 NI----VSNELFYDWETLRNDIVTHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSI 643

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +     +  ++  +  +DG +                    
Sbjct: 644 KASKDGILKQVVPEFERLKE-----NYELLWTIPSNDGYLQ------------------- 679

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K +      A+ +G+KT YY  
Sbjct: 680 -------LVGIMQKFVDQAISANTNYDPQKFESQKVPMKVILKDLLTAYKLGVKTLYYHN 732

Query: 905 SRSATSVEKSTLKGVDG 921
           +R     ++  +    G
Sbjct: 733 TRDGADDKQEDMDDCAG 749


>gi|132601|sp|P26685|RIR1_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|554615|gb|AAA42732.1| ribonuclease reductase [African swine fever virus]
          Length = 779

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 210/783 (26%), Positives = 357/783 (45%), Gaps = 74/783 (9%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           LI     L     +Y+ + AR  +  L +   ++      KA   +           +++
Sbjct: 38  LISYCSALTILHYDYSTLAARLSVYLLHQSTASSF----SKAVSLQAAQSCSRLSSHFVD 93

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
              K + +             + + Y RD+    LG++ + + Y L   +G  +E PQ  
Sbjct: 94  VVYKYKAI-----------FDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDA 142

Query: 321 FMRVAMGLA-LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           +MRVA+ +  +      K  +  Y+LLS      ++PT+FN+GT+ PQLSSCFL  V D+
Sbjct: 143 YMRVAIMIHGMGRVVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDN 202

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  ++  ++   +++   GG+G   + +R   + I G+  +S G+  ++ + N +    N
Sbjct: 203 LENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYAN 262

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           QGG R GA   YLE WH D+  FL + +      + R    ++    W+PDLFM+ +   
Sbjct: 263 QGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQ 322

Query: 497 ------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFRKI 540
                   W LFSPD+  +LH ++           +EF+  Y  Y       E +     
Sbjct: 323 IHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTGVT 377

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---ET 597
           +A  + ++    + + G+P+I FKD  N +S   HVG + +SNLC EIT+        E 
Sbjct: 378 TAKEIIKEWFKTVVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQ 437

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            VCNL ++NL A    + +DY  L          LDN+ID   +  E  ++SN  HR IG
Sbjct: 438 GVCNLAAVNLAAFIRESSYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIG 497

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G+ G       L + + SPEA+ I +     + + A+  S+ELA+E+G++ SF GS   
Sbjct: 498 IGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAAS 557

Query: 718 QGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +G+   D            E R                 +     G+RN    A+ PTAT
Sbjct: 558 KGLLQPDLWVRCGDLIPSWENRVAQTTQGVLTPKKWWQLRLAAIQGVRNGYLTALMPTAT 617

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            +N  G ++  +P   NLY +  +SG+F ++N +L+++L++ +LW E +   L    GSI
Sbjct: 618 SSNSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQQLLNAGGSI 677

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            +I  IP ++++ + T+ E++   L + A+ R  ++ Q+ SLN Y  EP   ++  +   
Sbjct: 678 QHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVL 737

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            W  GL T +YY         +K  ++  +   NA                       +C
Sbjct: 738 GWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA-----------------------DC 774

Query: 951 EVC 953
           E C
Sbjct: 775 EAC 777


>gi|238920520|ref|YP_002934035.1| ribonucleotide-diphosphate reductase subunit alpha [Edwardsiella
           ictaluri 93-146]
 gi|238870089|gb|ACR69800.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 760

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 201/806 (24%), Positives = 315/806 (39%), Gaps = 71/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY     R IE 
Sbjct: 64  KAAADLISRETPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDHVV-RLIEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   + + + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDTHLLTDFSRDEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q+  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQSGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     +FE  Y  YE+          RKI AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQSQFERLYVQYEQDNSIR----QRKIKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   HV  V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAHVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ PIDS     +
Sbjct: 529 VRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPIDSYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AICSEPL----HYDWETLRTEIVRDGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++  +  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWAMPGNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   K+L      A+ +G+KT YY  
Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R     E         + +      
Sbjct: 734 TRD--GAEDMQEDLGSAQDDGCESGA 757


>gi|284009346|emb|CBA76527.1| ribonucleoside-diphosphate reductase 1 alpha chain [Arsenophonus
           nasoniae]
          Length = 767

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 191/802 (23%), Positives = 319/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL+DVS   V   +    YDG+  SD+   +I
Sbjct: 8   SLLVTKRDGHKERIDLDKIHKVITWAAEGLKDVSVSQVELRSQIQFYDGIKTSDIHETMI 67

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  + P+Y  + AR  +  LR++                   LY       ++ 
Sbjct: 68  KAAADLISADTPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYQHVLHM-VKI 116

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   + + L + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 117 GKYDKHLLTDYSAEEFEQMDSFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 176

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 177 YILVAACLFSRYPKETRLDYIHRFYDAISNFKISLPTPIMAGVRTPTRQFSSCVLIECGD 236

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 237 SLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 296

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ ++  
Sbjct: 297 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQINKLMYERLIKSEE 356

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V+ L++ +     EFE  Y  YE+ A        +++ A+ L+  M+     
Sbjct: 357 ITLFSPSDVAGLYEAFFADQSEFERLYLKYEQDASIR----QKRVKALDLFSLMMQERAS 412

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +          G I L       
Sbjct: 413 TGRIYIQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTRPLNDINDEKGEIALCTLSAFN 472

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD+++D   + I  A+K +   R +G+G++ +   L    
Sbjct: 473 LGAITSLDELEELAVLAVRALDSLLDYQNYPIIAAEKGSMGRRTLGIGVINYAYYLAKHG 532

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PIDS     +
Sbjct: 533 VHYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNDTTYAKGILPIDSYKKSLD 592

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W  L+K +K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 593 A----LTSEPLHYDWQTLRKNIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 648

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              D  ++  +  +DG +                    
Sbjct: 649 KASKDGILRQVVPEYERL-----KNDYELLWQMPNNDGYLQ------------------- 684

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N          ++    +L      A+  G+KT YY  
Sbjct: 685 -------LVGIMQKFIDQSISANTNYDPTRFPNNKVPMNQLLKDLLLAYKYGVKTLYYHN 737

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 738 TRDGAEDTQVDLEEVVESADSD 759


>gi|238753721|ref|ZP_04615082.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
 gi|238707957|gb|EEQ00314.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
          Length = 761

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/800 (23%), Positives = 318/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                      ++  + ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------FDHVSKMVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     D   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEDFQQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRHTRMDYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ Q   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLQGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    ++FE  Y  YE+ +        +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQEQFERLYTQYEQDSSIR----QQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDPNGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + IE A++     R +G+G++ +   L    
Sbjct: 469 LGAIDSLDELEDLANLAVRALDALLDYQDYPIEAARRGAMGRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNHLAREQGACEWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----SDEPLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +        ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWEMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|221134588|ref|ZP_03560893.1| ribonucleotide-diphosphate reductase subunit alpha [Glaciecola sp.
           HTCC2999]
          Length = 773

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/831 (23%), Positives = 317/831 (38%), Gaps = 84/831 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A   L +VS   V  + +   +DG+S   +   LI
Sbjct: 4   QLSVTKRDGVTEAIDLDKIHKVITWAAKDLHNVSVSQVEIKAHIQFFDGISTEVIHETLI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + P+Y  + AR  +  LR++                      ++    +E 
Sbjct: 64  KSAADLISTDSPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------FDHVKSMVER 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   L + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDEHLLADYTAEEFEAMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YVLVAACLFANYPKATRLDYIKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIEAGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L   R+ +N  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYTRLIKNQN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     +F+  Y  YE      +    + I A+ L+   +     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDKFDELYVKYENDPSIRK----KSIKAMELFSLFMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L +   E  +   G I L       
Sbjct: 409 TGRIYLQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLEHVMDPEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD+++D   + +  A+ ++   R +G+G++ F   L    
Sbjct: 469 LGAIKSLDELEELADLAVRALDSLLDYQDYPVPAARNASLGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LA E+G    F  + + QG+ PID+     +
Sbjct: 529 VKYSDHSANGLIHKTFEAIQYYLMKASNNLAIEQGPCPLFNETTYSQGLMPIDTYKKDID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    L WD L++ V   G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 NI----CDEPLHLDWDSLRESVVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           KS+  G    V     N   +       ++ DL  +DG +                    
Sbjct: 645 KSSKDGVLKQVVPDYENLKDKY-----ELLWDLPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                    +  QK++DQ  S N          ++   K L       + +G+KT YY  
Sbjct: 681 -------LCAIMQKFVDQTISANTSYDPSKYEGNKVPMKLLIKDLLTTYKLGIKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
           +R          +  D  L+A+  T                 D  C    C
Sbjct: 734 TRDGAG------ESSDADLSAIKQTPQAQVVIEEE-------DDGCAGGAC 771


>gi|23100544|ref|NP_694011.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22778777|dbj|BAC15045.1| ribonucleoside-diphosphate reductase alpha subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 744

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 251/775 (32%), Positives = 369/775 (47%), Gaps = 89/775 (11%)

Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT-LIEKEPNYAKVTARF 223
            VE A   L +++      +  K +    SE+ LE ALI  +   + E  PN+    AR 
Sbjct: 16  KVERASQNL-NINKNEWYEKAEKIIPTNSSEAKLEDALINVALENMDEATPNWGFAAARI 74

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +EKL RE            T       Y     +  E+G+    L +     D+     
Sbjct: 75  YVEKLYREASNNRG-----YTQGSYGSFYA-LLEQLTEKGIYTPALLQKYTKEDIEEFGK 128

Query: 284 DLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAV 340
            ++ ERD  F YLG+  +  RY       +  E+PQ  +M +AM +   E   ++++  +
Sbjct: 129 AIQPERDQLFNYLGIYTVATRYLATDHEKNVYELPQERWMVIAMHIMQDEPADQRQENVL 188

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           E Y  LS+ +   +TPTL N+G  H QLSSCF+ TV D L  I+ +  + A L+K  GG+
Sbjct: 189 EAYWALSNLYMTVATPTLTNAGKTHGQLSSCFIDTVDDSLQSIYDSNSDIAKLSKNGGGI 248

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G     +R  G+ I G  G S GV+P++K  N+TAV+V+Q G RKGA+  YL+ WH D+E
Sbjct: 249 GVYMGKIRARGSSIKGFKGMSSGVVPWIKQLNNTAVSVDQLGTRKGAIAIYLDVWHQDIE 308

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLDL+ N GDDR R HD+ T   +PD FM++V     W LF P EV  +     ++F  
Sbjct: 309 SFLDLKLNNGDDRMRAHDIFTGVCLPDYFMEQVENRGDWYLFDPHEVRQVMGYSLEDFYD 368

Query: 521 A------YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                  +     +    E    RK+ A+ + ++++    E+G P++ ++D  N ++   
Sbjct: 369 EQKGSGSFRTRYEECIANEALSKRKVPAIEIMKRLMKSQLESGTPFMFYRDEVNRQNANA 428

Query: 575 HVGVVHSSNLCTEITLNSSSEE--------------------TAVCNLGSINLLAHFANN 614
           H G+++ SNLCTEIT N S  E                      VCNL S+NL     N 
Sbjct: 429 HEGLIYCSNLCTEITQNQSPTEFVEEFLENENTIVKKFKSGDYVVCNLSSVNLGRAVKN- 487

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
               D L   I   VR+LDNVIDIN   I++A+ +N  +RAIGLG  G+   L L  I +
Sbjct: 488 ----DVLERLIPIQVRMLDNVIDINTLPIKQAEITNRKYRAIGLGTFGWHHLLALKGIAW 543

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EAV  ADE  E I++  I +S+EL++E+G Y  ++GS W  G              +
Sbjct: 544 ESDEAVAYADELYEKIAYLTIQSSMELSKEKGHYPVYEGSKWQTG--------------E 589

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                  +   WDELK  VK  GMRN   MA+AP +T A I G + SIDP +Q  Y +  
Sbjct: 590 YFDQKGYTGNKWDELKAEVKQHGMRNGYLMAVAPNSTTAMIAGSTASIDPIFQVFYYEEK 649

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDP 853
                 V                                   +      ++  +A+ +D 
Sbjct: 650 KDFKIPVTAP-------------------------------ELDHHTYNVYRRSAYIVDQ 678

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            + ++  ++RQK IDQ+ S N Y+        L  ++ QAW  GLKTTYY+RS S
Sbjct: 679 RFSVKQNAKRQKHIDQSISFNFYVPNTIKASVLLDLHTQAWREGLKTTYYVRSTS 733


>gi|167623962|ref|YP_001674256.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           halifaxensis HAW-EB4]
 gi|167353984|gb|ABZ76597.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 762

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 199/810 (24%), Positives = 332/810 (40%), Gaps = 79/810 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   + +  ++  ++E A  GL +VS   V   ++   +DG++   +   +I 
Sbjct: 5   MTVTKRSGERETIDLDKIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++                   LY       +E+G
Sbjct: 65  AAADLISPEAPDYQFLSARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LVEQG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                + E     +L  L   + + RD  F Y  ++ L  +Y     ++    E  Q  +
Sbjct: 114 KYDAHILEDYSQEELDILDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + K   +FY+  S F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFAKYPKETRLKYVKDFYDATSLFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G D  R   ++    I  +  +R+ Q    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVDDNRVRHLDYGVQINKVMYQRLIQGGMI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  ++D +    +EFE  Y  YE      +    ++I AV L+  M+     T
Sbjct: 354 SLFSPSDVPGMYDAFFEDQQEFERLYLKYEADDSIRK----KQIKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP       V  SNLC EI L +           E A+C L ++NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         D+L      AVR LDN++D   + I  AKK++   R +G+G++ F + L
Sbjct: 470 GAIKK-----LDELEPLADLAVRALDNLLDYQDYPIISAKKASMNRRTLGIGVINFANYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  I  ++ E I F+ + AS++LAQE+GA  +F  + + +G+ PID+  
Sbjct: 525 AKEGVRYSDGSANGITHKTFEAIQFYLLKASMKLAQEQGACPAFHETTYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       +    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 RDLDKI----CDEPLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V             +   ++  +  +DG +                
Sbjct: 641 LISVKASKDGQLKQVVPDFEK-----YQYSYELLWQMPNNDGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTT 900
                           QK++DQ+ S N   D           K L      A+  G+KT 
Sbjct: 681 -----------LVGLMQKFVDQSISANTNYDPTRFEGGRVPMKVLLKDLLTAYKYGVKTL 729

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           YY  +R   S     +  ++ + ++     
Sbjct: 730 YYHNTRDGASDSLDDITAIEKEDDSCAGGA 759


>gi|71282068|ref|YP_269048.1| ribonucleotide-diphosphate reductase subunit alpha [Colwellia
           psychrerythraea 34H]
 gi|71147808|gb|AAZ28281.1| ribonucleoside-diphosphate reductase, alpha subunit [Colwellia
           psychrerythraea 34H]
          Length = 756

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/791 (23%), Positives = 319/791 (40%), Gaps = 71/791 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             L +   +G   + + +++  ++  A  GL+ VS   V  +++   YDG+   D+   +
Sbjct: 3   NNLFVTKRNGEKETIDLEKIHRVIAWAADGLEQVSVSQVELKSHIQFYDGIKTEDIHETI 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI +E P+Y  + AR  +  LR++                   LY       +E
Sbjct: 63  IKSAADLISEETPDYQYLAARLAVFHLRKKAYGQFEPPA----------LYDHVVK-LVE 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + L       D  ++++ + + RD  F Y  ++ L  +Y     ++G   E  Q 
Sbjct: 112 AGKYDQHLLADYTKDDFEHMSSFMDHSRDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQF 171

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V+  L        + +   +FY+ +S F     TP +    T   Q SSC L    
Sbjct: 172 LYILVSACLFAKYPVESRLRYVEDFYHAISRFKISLPTPIMAGVRTPTRQFSSCVLIECG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I        G IPF K       +
Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +  
Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +V  L+D +    ++FE  Y  YE      +    ++I A+ L+        
Sbjct: 352 SITLFSPSDVPGLYDAFFEDQEKFERLYVQYE----NDDSIRKKRIKAIELFTLFAQERA 407

Query: 555 ETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  ++   D CN  SP       +  SNLC EI L +          G I L      
Sbjct: 408 STGRIYLQNVDHCNTHSPFDSSKAAIRQSNLCLEIALPTKPMNDINDENGEIALCTLSAF 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D+L      AVR LD+++D   + I  A+ ++   R +G+G++ +   L   
Sbjct: 468 NLGAIDSLDELEGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIGVINYAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y++  A  +   + E I F+ + A+ ELA+E+GA   F  +L  +G+ PID+     
Sbjct: 528 GLYYSNGSANNLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKGILPIDTYKKTI 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 588 DDI----TGEPLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIEPPRGLIS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V              +  ++ ++  + G                     
Sbjct: 644 IKASKDGVLKQVVPEYEKLKG-----NYELLWNIPDNQG--------------------- 677

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY- 902
                 +E     QK++DQA S N   D       +   K++      A+ +G+KT YY 
Sbjct: 678 -----YLELVGIMQKFVDQAISANTNYDPNKFEGGKVPVKQILKDILTAYKLGVKTLYYH 732

Query: 903 -LRSRSATSVE 912
             R  ++  +E
Sbjct: 733 NTRDGASDDIE 743


>gi|331087815|ref|ZP_08336740.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409510|gb|EGG88951.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 761

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 240/786 (30%), Positives = 375/786 (47%), Gaps = 101/786 (12%)

Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PN 215
           +  +E+    +     + V S  +L E +   +   + +     ALI ++  L  +E P 
Sbjct: 25  QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGGRFDALIKAAAELTSQEAPR 84

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  +    L  +   ++            + ++  L         E+G+    + E+   
Sbjct: 85  WEMIAGWLLDFRFSEKLKEEEKSIGISDLYEKIVYL--------TEKGLYGSYIMENYSK 136

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE 334
            ++V   + +  ER+  F Y GL +L  RY         +E PQ  F+ +A+ LA+ E  
Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196

Query: 335 --KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             +     EFY++LS      +TPTL N+     QLSSCF+ TVPD L GIF ++   AM
Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R GAV  YL
Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV--- 507
           + WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N    W L  P E+   
Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376

Query: 508 --SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L D +G+E+E  Y +    A   +    R +    L R ++    ETG P+   +D
Sbjct: 377 KGYCLEDSFGEEWERRYWDCVHDARIKK----RTVLLKDLIRLIIKSAAETGTPFAFNRD 432

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNL 602
             N  +P  H G+++ SNLCTEI  N S+                        E  VCNL
Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S++L     N   D   +   +RT VR LDNVID+N + +  AK +NHT+R+IGLG+ G
Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    I + S E +   D+  E I++ AI AS + A+E+G+Y  F+GS W+ G   
Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESG--- 606

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                  W EL+++V   GMRN+  +AIAPT++ + I G +  I
Sbjct: 607 -----------AYFEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           DP                V+N + + E K       +M+  +            +  +  
Sbjct: 656 DP----------------VMNKYFLEEKKG------SMLPRVA---------PDLSPETY 684

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A  ID  W + +   RQ+ +DQAQS+N Y+ ++ + +++  +Y +AW  G+KT Y
Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744

Query: 902 YLRSRS 907
           Y+RS+S
Sbjct: 745 YVRSKS 750


>gi|2914260|pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 gi|2914262|pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
 gi|2914264|pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
           Reduced Active Site From Escherichia Coli
          Length = 761

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT +Y  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLFYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|254361271|ref|ZP_04977414.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|261495802|ref|ZP_05992237.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|110735341|gb|ABG89241.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica]
 gi|153092767|gb|EDN73810.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|261308536|gb|EEY09804.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 756

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/795 (23%), Positives = 308/795 (38%), Gaps = 71/795 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +GT    N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      E+  + +  
Sbjct: 64  KAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL-----------YEHVKKLVAL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  + L+ N G +  R   M+    I  +  +R+ +   
Sbjct: 293 SQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L++ +     +FE  Y  YE+          RK+ AV L+  ++     
Sbjct: 353 ISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIR----QRKVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN        V  +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       VR LD ++D   + +  A+ S+   RA+G+G++ +   L    
Sbjct: 469 LGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVINYAYYLAKNQ 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS+ LA+E+GA + F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLPIDTYKKEID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W++L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 E----LTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGIEPPRGYISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  +   ++I
Sbjct: 645 KASKDGILKQVVPEYER--------------------------------LKAYYELLWDI 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
             M   +      QK++DQA S N           +   K L      A+  GLKT YY 
Sbjct: 673 PNMDGYLHLVGIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQ 732

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 733 NTRDGAEDVQDDLDE 747


>gi|261493905|ref|ZP_05990415.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261310438|gb|EEY11631.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 756

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 184/795 (23%), Positives = 308/795 (38%), Gaps = 71/795 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +GT    N  ++  ++  A  GL++VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      E+  + +  
Sbjct: 64  KAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL-----------YEHVKKLVAL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  + L+ N G +  R   M+    I  +  +R+ +   
Sbjct: 293 SQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L++ +     +FE  Y  YE+          RK+ AV L+  ++     
Sbjct: 353 ISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIR----QRKVKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN        V  +  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       VR LD ++D   + +  A+ S+   RA+G+G++ +   L    
Sbjct: 469 LGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVINYAYYLAKNQ 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS+ LA+E+GA + F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLPIDTYKKEID 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W++L++ +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 E----LTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGIEPPRGYISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  +   ++I
Sbjct: 645 KASKDGILKQVVPEYER--------------------------------LKAYYELLWDI 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
             M   +      QK++DQA S N           +   K L      A+  GLKT YY 
Sbjct: 673 PNMDGYLHLVGIMQKFVDQAISANTNYDPDRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQ 732

Query: 904 RSRSATSVEKSTLKG 918
            +R      +  L  
Sbjct: 733 NTRDGAEDVQDDLDE 747


>gi|114563304|ref|YP_750817.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           frigidimarina NCIMB 400]
 gi|114334597|gb|ABI71979.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella frigidimarina NCIMB 400]
          Length = 762

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/792 (24%), Positives = 323/792 (40%), Gaps = 79/792 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   S +  ++  ++  A  GL++VS   V   ++   +DG+    +   +I 
Sbjct: 5   MTVTKRSGERESIDLDKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  V AR  +  LR++                      ++  + +E G
Sbjct: 65  AAADLISPESPDYQFVAARLAVFHLRKKAFGQFEPPTL-----------YDHVTKLVEIG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                +       +L  L   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDMHIMADYSREELDILDTYIDHWRDLNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + K   +FY+  S F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFARYPKEIRLKYIKDFYDATSLFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGEYI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EFE  Y  YE+ ++  +    ++I AV L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSNIRK----KQIKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP       +  SNLC EI L +           E A+C L ++NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIKQSNLCLEIALPTKPLTNIDDPDGEIALCTLSALNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A       D  +L      AVR LDN++D   + I+ A+ S+   R +G+G++ F + L
Sbjct: 470 GAI-----KDLSELEPLADLAVRALDNLLDYQDYPIKAAQTSSMNRRTLGIGVINFANYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+   A  +  ++ E I F+ + AS+ LA+E+GA   F  + + +G+ PID+  
Sbjct: 525 AKNGKKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFHETTYSKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       +    + W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 RDLDKI----CDEPLHMDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V       LK +      ++ ++  +DG I                
Sbjct: 641 LISVKASKDGQLKQVVPDF-ELLKDK----YELLWNMPNNDGYIQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTT 900
                           QK+IDQA S N   D           + L       + +G+KT 
Sbjct: 681 -----------LVGLMQKFIDQAISANTNYDPSRFEGGRVPMQTLLKDLLSVYKLGIKTL 729

Query: 901 YYLRSRSATSVE 912
           YY  +R   S +
Sbjct: 730 YYHNTRDGASDQ 741


>gi|268591163|ref|ZP_06125384.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
 gi|291313389|gb|EFE53842.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
          Length = 763

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/802 (24%), Positives = 315/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMI 63

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI    P+Y  + AR  +  LR++                      ++    +E 
Sbjct: 64  KAAADLITGDTPDYQYLAARLAIFNLRKKAYGQFEPPAL-----------YKHVKHLVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E   + +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSEAEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSHYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N  
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+  +  +      + AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDENIRKS----SVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+ +   R +G+G++ +   L    
Sbjct: 469 LGAIDSLDELEELAILAVRALDALLDYQDYPIIAAKQGSMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QGV PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKKELD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 K----LTNEPLHYDWEALRQEIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++  +  + G +                    
Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNSGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +    +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFESGKVPMNQLLKDLLLAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755


>gi|212635282|ref|YP_002311807.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           piezotolerans WP3]
 gi|212556766|gb|ACJ29220.1| Ribonucleoside-diphosphate reductase [Shewanella piezotolerans WP3]
          Length = 801

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/785 (24%), Positives = 320/785 (40%), Gaps = 69/785 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   + +  ++  ++E A  GL +VS   V   ++   ++G+    +   +I 
Sbjct: 44  MTVTKRSGERETIDLDKIHRVIEWAAKGLTNVSVSEVELRSHLQFFEGIPTEAIHETIIK 103

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  + AR  +  LR++                   LY       IE G
Sbjct: 104 AAADLISPEAPDYQFLAARLAIFHLRKKAFGQFEPP----------KLYDHVVK-LIELG 152

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                + E     ++  L   + + RD  F Y  ++ L  +Y     ++    E  Q  +
Sbjct: 153 KYDAHILEDYSREEIDILGGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLY 212

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  + K   +FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 213 ILVAACLFAKYPKETRLKYIKDFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 272

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 273 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 332

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G D  R   ++    I  L  +R+ Q    
Sbjct: 333 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKLMYQRMIQGGMI 392

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  ++D +    +EFE  Y  YE      E    +++ AV L+  M+     T
Sbjct: 393 SLFSPSDVPGMYDAFFEDQEEFERLYLKYEAD----ESIRKQQVKAVELFSLMMQERAST 448

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       V  SNLC EI L +          G I L    A N 
Sbjct: 449 GRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 508

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + ++L      AVR LDN++D   + I  A+K++   R +G+G++ F + L    +
Sbjct: 509 GAIKNLEELEPLADLAVRALDNLLDYQDYPIISAEKASMNRRTLGIGVINFANYLAKEGV 568

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  I  ++ E I ++ + AS  LA+E+GA  SF  + + +G+ PID+     + 
Sbjct: 569 RYSDGSANSITHKTFEAIQYYLLKASNNLAKEQGACPSFHETTYSKGILPIDTYKRDLDK 628

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +    + W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 629 I----CDEPLHMDWESLREEIKTHGLRNSTVSALMPSETSSQISNATNGIEPPRGLISVK 684

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V          +  +   ++  +  +DG I                     
Sbjct: 685 ASKDGQLKQVVPDF-----DKYQYSYELLWQMPNNDGYIQ-------------------- 719

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQ+ S N   D       +   K L      A+  G+KT YY  +
Sbjct: 720 ------LVGLMQKFVDQSISANTNYDPGRFPDGKVPMKVLLKDLLTAYKYGVKTLYYHNT 773

Query: 906 RSATS 910
           R   S
Sbjct: 774 RDGAS 778


>gi|227114437|ref|ZP_03828093.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 761

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/783 (24%), Positives = 309/783 (39%), Gaps = 71/783 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I
Sbjct: 4   SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++               +M  L           
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSQEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ A   +    ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 AI----CNEPLHLDWEALRNDIKAYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +++
Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D           K+L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQ 732

Query: 904 RSR 906
            +R
Sbjct: 733 NTR 735


>gi|183599609|ref|ZP_02961102.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827]
 gi|188021859|gb|EDU59899.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827]
          Length = 763

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 191/802 (23%), Positives = 314/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL +VS   V   +    YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGHKERIDLDKIHKVITWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMI 63

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI    P+Y  + AR  +  LR++                      ++  R +E 
Sbjct: 64  KAAADLITGDTPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------YKHVTRLVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSQEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSHYPKETRLDYIRRFYDAASTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +N  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKNQD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +      + AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYLAYEQDDSIRKS----SVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   +   V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + I  AKK     R +G+G++ +   L    
Sbjct: 469 LGAIENLDELEELAVLAVRALDALLDYQDYPIIAAKKGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPIDTYKKELD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 K----LTDEPLHYDWETLRKDIQQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     N           ++  +  + G +                    
Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNSGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQ+ S N   D       +    +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQSISANTNYDPTRFATGKVPMNQLLKDLLLAYKFGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755


>gi|315928436|gb|EFV07748.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 698

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 278/760 (36%), Positives = 394/760 (51%), Gaps = 118/760 (15%)

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             Y      + +   + R+L      +DL  L   +K ERD  F YLG++ LYDRY +  
Sbjct: 2   NRYNHLCEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKD 61

Query: 310 -NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
             G  IE+PQ  FM +AM LA  E   ++ A +FY+L+S F  M +TPTL N+ T   QL
Sbjct: 62  SKGMPIELPQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQL 121

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SSC++ + PD++ GIF + QE A+L+K+ GG+G DW+ VR +G  I G    + G+IPFL
Sbjct: 122 SSCYIGSTPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFL 181

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+ ND AVAV+Q G RKGA+  Y+E WH+D+ +F+DLRKN+G++RRR H++  A WI DL
Sbjct: 182 KITNDIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDL 241

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV  N  WTLF P + +DL DLYG+ FE  YE YE+     E      + A  LW+K
Sbjct: 242 FMKRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKK 297

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------- 601
           +L   FETG P++ FKD  N  +P  HVG++ SSNLCTEI  N+      +         
Sbjct: 298 ILLNYFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDE 357

Query: 602 --------------------------------------------LGSINLLAHFANNQFD 617
                                                           NL +   +  + 
Sbjct: 358 LHFDEEQKVVIDRGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT 417

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            + +   + TA+R+LDNVID+N +   K K +N   RAIGLG+MG    L    I + S 
Sbjct: 418 KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSD 477

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E +   DE ME ISF AI+AS  LA E+G+Y  F+GS W +G+FPID     A+      
Sbjct: 478 EHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLRE 537

Query: 738 -MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +   S   W +L+++VK  GMRN   MAIAPT++I+ + G +Q+I+P Y+  + + N+S
Sbjct: 538 GLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLS 597

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G   VV                               +  +  D  + +  A+E+D   L
Sbjct: 598 GMIPVV-------------------------------VPNLSLDTWQYYTPAYELDQKIL 626

Query: 857 IESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +++A+ R KWIDQ QSLN++L   + SG  L+ IY+ AW +G+K+TYYLRS S       
Sbjct: 627 VKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES------- 679

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                  K+N    +                   ECE CQ
Sbjct: 680 ---PDSEKVNVADRSI------------------ECEGCQ 698


>gi|148244628|ref|YP_001219322.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326455|dbj|BAF61598.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 758

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 180/787 (22%), Positives = 320/787 (40%), Gaps = 75/787 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K+   +G   S + +++  +V  A   L+ VS   V        +DG+   D+   +I
Sbjct: 4   DIKVTKRNGQQESIDMEKIHRVVHWASQDLKSVSVSQVEINAQLAFFDGIKTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  + P+Y  + AR  +  LR++   +    P           + E+  +  + 
Sbjct: 64  KSAADLISTDIPDYQYLAARLSIFHLRKKAFKSFTPPP-----------FFEHIKKITDL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G+  + +    +  ++  L + + + RD  F Y+ ++ L  +Y     + G   E PQ  
Sbjct: 113 GIYDKDILNKYLKEEIEILGSYIDHWRDMNFSYVAVKQLEGKYLVQNRVTGEIYESPQFL 172

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M V M L  +    ++      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YMLVGMCLFQEYEVSKRMNTVKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIETDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  I               G+G +   +R +G+ I G      G IPF K  +    + 
Sbjct: 233 DLDSISATAGVIVKYISQRAGIGINGGKIRAIGSPIRGGEATHTGCIPFYKHFHTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ NTG D  R   ++       L  +R  ++  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLKDGD 352

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            TLFSP +  DL++ +  + E     Y +      I+    I A  L+ K +     TG 
Sbjct: 353 ITLFSPHDTPDLYNAFFADQEEFKRLYHKYEQNTLIRKH-TIKARELFSKFIQERANTGR 411

Query: 559 PWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLA 609
            ++   D CN  S        +  SNLC EITL +           E A+C L ++NL A
Sbjct: 412 IYLQNVDHCNTHSAFNAKQAPIKQSNLCMEITLPTKPLYSIQDEQGEIALCTLSAVNLGA 471

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             +      ++L +     VR LD ++D   + I+ A+ ++   R +G+G+      L  
Sbjct: 472 LDS-----LNELETLTDIIVRSLDCLLDYQDYPIKAAELASKNRRTLGIGVTNLAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y+     ++   + E + ++++ AS  LA+E GA   F  + + QG+ PIDS    
Sbjct: 527 NGAKYSDGSGNQLIHTTFEALQYYSLKASNTLAKELGACPLFFQTQYSQGIMPIDSYKKD 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +   +  +    +  WD L++ + + G+RNS   A+ P  + + I   +  I+P    +
Sbjct: 587 IDAFCDFKL----KFDWDTLRQDITSKGLRNSTLTALMPCESSSQISNSTNGIEPPRGFV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K +  G    +         +       ++ D+K ++G +                  
Sbjct: 643 SIKQSKDGILKQIVPDY-----ELLKNQYELLWDIKDNEGYLQ----------------- 680

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
                         QK++DQ+ S N +        ++   K       +A+  G+KT YY
Sbjct: 681 ---------LCGIMQKFVDQSISTNTHYDPSQFEGNKVPIKLFLMDLLKAYKYGIKTLYY 731

Query: 903 --LRSRS 907
              R   
Sbjct: 732 HTTRDGG 738


>gi|153814164|ref|ZP_01966832.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756]
 gi|145848560|gb|EDK25478.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756]
          Length = 761

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 240/786 (30%), Positives = 375/786 (47%), Gaps = 101/786 (12%)

Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PN 215
           +  +E+    +     + V S  +L E +   +   + +     ALI ++  L  +E P 
Sbjct: 25  QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGGRFDALIKAAAELTSQEAPR 84

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  +    L  +   ++            + ++  L         E+G+    + E+   
Sbjct: 85  WEMIAGWLLDFRFSEKLKEEEKSIGISDLYEKIVYL--------TEKGLYGSYIMENYSK 136

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE 334
            ++V   + +  ER+  F Y GL +L  RY         +E PQ  F+ +A+ LA+ E  
Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196

Query: 335 --KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             +     EFY++LS      +TPTL N+     QLSSCF+ TVPD L GIF ++   AM
Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           ++KY GG+G  +  VR  G+ I G  G + GVI ++++ NDTAVAV+Q G R GAV  YL
Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV--- 507
           + WH D+ EFL LR N GD+R + HD+  A   PDLF K   +N    W L  P E+   
Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376

Query: 508 --SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
               L D +G+E+E  Y +    A   +    R +    L R ++    ETG P+   +D
Sbjct: 377 KEYCLEDSFGEEWERRYWDCVHDARIKK----RTVLLKDLIRLIIKSAAETGTPFAFNRD 432

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNL 602
             N  +P  H G+++ SNLCTEI  N S+                        E  VCNL
Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            S++L     N   D   +   +RT VR LDNVID+N + +  AK +NHT+R+IGLG+ G
Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           +   L    I + S E +   D+  E I++ AI AS + A+E+G+Y  F+GS W+ G   
Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESG--- 606

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                                  W EL+++V   GMRN+  +AIAPT++ + I G +  I
Sbjct: 607 -----------AYFEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           DP                V+N + + E K       +M+  +            +  +  
Sbjct: 656 DP----------------VMNKYFLEEKKG------SMLPRVA---------PDLSPETY 684

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
             +  A  ID  W + +   RQ+ +DQAQS+N Y+ ++ + +++  +Y +AW  G+KT Y
Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744

Query: 902 YLRSRS 907
           Y+RS+S
Sbjct: 745 YVRSKS 750


>gi|284793845|pdb|2X1Y|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|284793846|pdb|2X1Y|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|284793847|pdb|2X1Y|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662301|pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662302|pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|294662303|pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
           E. Coli To 2.1 A Resolution
 gi|303324818|pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324819|pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324820|pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT Y   
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYXQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|253687497|ref|YP_003016687.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754075|gb|ACT12151.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 761

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/790 (24%), Positives = 310/790 (39%), Gaps = 71/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I
Sbjct: 4   SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++               +M  L           
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 AI----CNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D       +   K+L      A+  G+KT YY 
Sbjct: 673 PSNDGYLQLVGLMQKFVDQAISSNTNYDPSRFPSGKVPMKQLLKDLVTAYKFGVKTLYYQ 732

Query: 904 RSRSATSVEK 913
            +R      +
Sbjct: 733 NTRDGAEDVQ 742


>gi|238760195|ref|ZP_04621341.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
 gi|238701574|gb|EEP94145.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
          Length = 761

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/800 (24%), Positives = 316/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYSAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YMLVSACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     EFE  Y  YE+  +  +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDEFERLYTQYEQDDNIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIESLDDLEELAELAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----SNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|238785707|ref|ZP_04629682.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
 gi|238713392|gb|EEQ05429.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
          Length = 761

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/800 (24%), Positives = 320/800 (40%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V +L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPELYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPTVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AISSEPL----HYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       + +G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKLGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|259907949|ref|YP_002648305.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|224963571|emb|CAX55061.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
          Length = 761

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 308/782 (39%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++                M           +E 
Sbjct: 64  KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +++    + AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKLR----VKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIESLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ VK  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----CNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERL-----KDNYELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D           K+L      A+  G+KT YY  
Sbjct: 681 -------LVGVMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|293395207|ref|ZP_06639493.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
 gi|291422384|gb|EFE95627.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
          Length = 762

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/807 (23%), Positives = 317/807 (39%), Gaps = 71/807 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A           +  R +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLHA-----------HVVRMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   + + + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYSTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +        +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIR----QKRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I+ A +     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYAQGILPIDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D +         W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 586 DLDGI-CQEPLHYDWETLRKEIQETGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   K+L       +  G+KT YY 
Sbjct: 673 PSNDGYLQLVGLMQKFIDQSISANTNYDPTRFAGGKVPMKQLLKDLLTTYKFGVKTLYYQ 732

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930
            +R      +  +       +      
Sbjct: 733 NTRDGAEDVQEDMLPAKSADDDCESGA 759


>gi|167462364|ref|ZP_02327453.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 729

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 236/750 (31%), Positives = 347/750 (46%), Gaps = 82/750 (10%)

Query: 191 DGLSESDLETALIFSSRTLIEK--EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           D ++   +  AL        ++   P++  V A   L  L +       K     T ++ 
Sbjct: 14  DKITHEAILKALDNVGLPDSDEGTHPDWTYVAAYVFLRSLYKAA----SKNRVYDTSNKY 69

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y         +G+ +  +       ++     +++ ERD  F Y+GL+ L DRY   
Sbjct: 70  GDFYA-LIKTLSTQGIYSPDILRLYSKDEINEFGREIEPERDKLFNYIGLKTLADRYLAK 128

Query: 309 -INGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
             +G   E+PQ  FM +AM L +  +E  +     E Y  LS+ +   +TPTL N+G   
Sbjct: 129 SYDGEVYELPQERFMIIAMTLMMYEREDHRADLVKEAYWALSNLYMTVATPTLANAGLSF 188

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            QLSSCF+  V D L  I+ +  + AML+K  GG+G     +R  G+ I G  G S GVI
Sbjct: 189 GQLSSCFIDIVDDSLRSIYDSNTDVAMLSKNGGGIGVYVGKLRARGSDIKGFKGVSSGVI 248

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P+++  N+TAV+V+Q G+RKG++  YL+ WH D+  FLDL+ N GD+R R HD+     I
Sbjct: 249 PWVRQLNNTAVSVDQLGRRKGSIAVYLDVWHKDILAFLDLKLNNGDERLRAHDIFPGVCI 308

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIAYE-----NYERQADRGEIKVFR 538
           PDLFM+ V     W LF P EV  +     ++F  E   E      YE   D  E+   R
Sbjct: 309 PDLFMESVRDRGDWYLFDPHEVRRIMGYSLEDFYDEEKGEGSFRQKYEECVDSPELAKVR 368

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595
            + A+ + + ++    ETG P++ ++D  N  +P  H G+++ +NLCTEI  N S     
Sbjct: 369 -VPAIEIMKSIMKSQLETGTPYMFYRDEANRMNPNGHAGMIYCTNLCTEIMQNMSPTVVV 427

Query: 596 -----------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
                            +  VCNL SINL          Y+ L   I   VR+LDNVIDI
Sbjct: 428 EEETDRDGNIITTKEPGDFVVCNLSSINLTRA-------YEVLDRLIPIQVRMLDNVIDI 480

Query: 639 NCHTIEKAKK--SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           N   IE  +   +N  +RAIGLG  G+   L +  I + S +A   A+E  E I++  I 
Sbjct: 481 NADKIEVQQAVVTNRKYRAIGLGTFGWHHLLAVRGIQWESEDAATFANELYEKIAYLTIR 540

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA E+G Y +++ S W  G + I            L M +     W++L   V   
Sbjct: 541 ASCMLAAEKGPYPAYEVSDWSTGDYFIKHGYARP---GFLEMKKGDLTDWEDLADNVTIY 597

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN   MA+AP  + A I G +  IDP +   Y +        V       +L    +W
Sbjct: 598 GIRNGYLMAVAPNMSTAKIGGSTDGIDPIFMRTYSEEKSKYKIPVTVP----DLTTSTMW 653

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                      ++ +AF ID  W I   + RQ+ IDQ  S NLY
Sbjct: 654 ---------------------------LYKSAFNIDQTWSIRQNAARQRHIDQGVSFNLY 686

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +      K L  ++  AW  GLK+TYYLRS
Sbjct: 687 VPNGVKAKDLLGLHMLAWESGLKSTYYLRS 716


>gi|292488818|ref|YP_003531705.1| ribonucleotide reductase subunit alpha [Erwinia amylovora CFBP1430]
 gi|292899969|ref|YP_003539338.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Erwinia
           amylovora ATCC 49946]
 gi|291199817|emb|CBJ46940.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia
           amylovora ATCC 49946]
 gi|291554252|emb|CBA21548.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora
           CFBP1430]
 gi|312172976|emb|CBX81231.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 761

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 196/782 (25%), Positives = 314/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++                M           +E 
Sbjct: 64  KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFANQEEFERLYTQYEQDGSIRK----QRVKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ +   L    
Sbjct: 469 LGAIDSLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ VKT G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----CNTPLLLDWEALRESVKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK     +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEY-ELLKD----NYELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISSNTNYDPTRFANGKVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|283786034|ref|YP_003365899.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter
           rodentium ICC168]
 gi|282949488|emb|CBG89101.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter
           rodentium ICC168]
          Length = 761

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 190/782 (24%), Positives = 314/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGEFEPPA----------LYDHVVKM-VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP ++  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDMPGLYDAFFADQDEFERLYCQYEKDDSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  ++L      AVR LD ++D   + I  A++     R +G+G++ +   L    
Sbjct: 469 LGAINSLEELEDLAVLAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AIASEPL----HFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V      + +        ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVP----DYEHLG-NAYELLWEMPGNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|170726651|ref|YP_001760677.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           woodyi ATCC 51908]
 gi|169811998|gb|ACA86582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella
           woodyi ATCC 51908]
          Length = 762

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/785 (23%), Positives = 316/785 (40%), Gaps = 69/785 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+    G     +  ++  ++  A   L++VS   V   ++   +DG+    +   +I 
Sbjct: 5   LKVTKRSGEREIIDLDKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISPESPDYQFLSARLAIFHLRKKAFGQFEPP----------KLYDHVVK-LVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                + +     +L  L   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDTHILQDYTREELDILDGYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFAKYPQETRLDYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ Q    
Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQINKLMYQRLIQGGVI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  L+D +     EF+  Y  YE      +    +++ A  L+  M+     T
Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFDRLYLQYEADDSIRK----KQVKASELFGLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  ++   D CN  SP       +  SNLC EI L +   +      G I L    A N 
Sbjct: 410 GRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLDNVNDPNGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               +  +L      AVR LDN++D   + +  A+KS+   R +G+G++ F + L    +
Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPLIAAQKSSMNRRTLGIGVINFANYLAKEGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  I  ++ E I ++ + AS+ LA+E+GA  +F  + + +GV PID+     + 
Sbjct: 530 RYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPAFHETTYSKGVLPIDTYKRALDN 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +    + W+ L++ + T G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 I----CDEPLHMDWETLRQDIVTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           S+  G    V             +   ++  +  +DG +                     
Sbjct: 646 SSKDGQLKQVVPDFEK-----YQYSYELLWQMPNNDGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   + L      A+ +G+KT YY  +
Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPSRFDNQKVPMQVLLKDLLNAYKLGVKTLYYHNT 734

Query: 906 RSATS 910
           R   S
Sbjct: 735 RDGAS 739


>gi|283806799|pdb|2X0Z|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|283806800|pdb|2X0Z|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|283806801|pdb|2X0Z|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662294|pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662295|pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|294662296|pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
           E. Coli
 gi|303324811|pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324812|pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
 gi|303324813|pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
           E. Coli
          Length = 761

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT  Y  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLXYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|238797462|ref|ZP_04640961.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
 gi|238718733|gb|EEQ10550.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
          Length = 761

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/800 (24%), Positives = 318/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIRTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YMLVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAKEQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----SDEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +        ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|269139683|ref|YP_003296384.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda EIB202]
 gi|267985344|gb|ACY85173.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella
           tarda EIB202]
 gi|304559552|gb|ADM42216.1| Ribonucleotide reductase of class Ia, alpha subunit [Edwardsiella
           tarda FL6-60]
          Length = 760

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 199/806 (24%), Positives = 312/806 (38%), Gaps = 71/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GLQ+VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                   LY     R +E 
Sbjct: 64  KAAADLISRETPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDHVV-RLVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   L + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDAHLLTDFSRDEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YMLVAACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ Q   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNRLMYQRLIQGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     +FE  Y  YE+ +        RKI AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQNQFERLYVQYEQDSRIR----QRKIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSQDDLEELATLAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LAQE+GA   F  + + QG+ PIDS     +
Sbjct: 529 VRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPIDSYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+  +   G+RNS   ++ P+ T + I   +  I+P    + +
Sbjct: 589 AICSEPL----HYDWETLRAEIVRDGLRNSTLSSLMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++  +  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWAMPGNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +   K+L      A+ +G+KT YY  
Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R     E         + +      
Sbjct: 734 TRD--GAEDMQEDLGSAQDDGCESGA 757


>gi|326783147|ref|YP_004323544.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
 gi|310005565|gb|ADO99953.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
          Length = 766

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 201/797 (25%), Positives = 331/797 (41%), Gaps = 80/797 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +G   S N  ++  +VE AC GL  VS+  V   +    +DG+  S ++  L+ 
Sbjct: 5   INVIKRNGDKDSLNLAKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIKTSQIQEILVK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           S+  LI  E PNY  V +R LL  LR+ +       P             E+  +  +  
Sbjct: 65  SASDLISLEYPNYQYVASRLLLFDLRKALNDHYEDHPPIL----------EHVKKCADLD 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
           V  + + E   + +   + + + Y RD+ F Y G++ + D+Y      +G   E PQ  +
Sbjct: 115 VYDKTIIEKYSEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A+ L     + ++      +YN +S       TP +    T   Q +SC L  V D 
Sbjct: 175 IMIALTLFQRYPKEKRLDYVRRYYNAISKHKINIPTPVMAGVRTPLRQFASCVLVDVDDT 234

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  IF +            G+G +   +RG+ + I G   +  GVIPFLK    T     
Sbjct: 235 LDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRCCT 294

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R G+   +   WH ++E+ L L+ N G +  R   ++ +  I  LF  R   N   
Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMANQEI 354

Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +LFSP +V  L+D +G  +F+  Y  YE      E    + I    L+  +L    ETG 
Sbjct: 355 SLFSPHDVPRLYDTFGTPDFDELYLQYEAD----ESVPRKTIGGYELFNNLLKERSETGR 410

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------ETAVCNLGSINLLAH 610
            +I   D CN  S       V+ SNLC EITL +           E A+C L +IN+   
Sbjct: 411 IYIMNIDHCNSHSSFLDK--VNMSNLCQEITLPTEPINHIDDPNGEIALCILSAINVGKI 468

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              +Q D          AVR L+ +ID   + +E AK+S    R++G+G +G    L   
Sbjct: 469 TQLDQMDE-----LCDLAVRALEELIDYMQYPVEAAKRSTLARRSLGIGYIGLAHYLAKN 523

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y  PEA ++  +  E   +H + AS  LA+E+GA   F+ + +  GV PID+     
Sbjct: 524 GVKYDDPEAWKLVHDLTESFQYHLLKASNTLAKEKGACEGFRHTKYSNGVLPIDTYKKEV 583

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +       W  L+  +   G+R+S   A  P+ + + +   +  I+P    L 
Sbjct: 584 DEI----VPNKLNYDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDFLS 639

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           VK +  G    +     +        +  ++ D+K + G                     
Sbjct: 640 VKKSKKGPLKQIVPGYPHLKS-----NYTLLWDMKDNGG--------------------- 673

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                 I   +  QK+ DQA S N          +E     +     + +  G KT+YY 
Sbjct: 674 -----YIRITAVMQKFFDQAISGNWSYNPSNYPNNEVPMSVMTKDLIETYKYGWKTSYYQ 728

Query: 904 RS---RSATSVEKSTLK 917
            +   +S   VE + + 
Sbjct: 729 NTYDAKSDLDVEDTKVS 745


>gi|310768142|gb|ADP13092.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia sp.
           Ejp617]
          Length = 761

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/782 (24%), Positives = 308/782 (39%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +++ A   LQ+VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++                M           +E 
Sbjct: 64  KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L       +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +++    + A+ L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKLR----VKAIDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIESLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L++ VK  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 AI----CNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERL-----KDNYELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D           K+L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|91793307|ref|YP_562958.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           denitrificans OS217]
 gi|91715309|gb|ABE55235.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella denitrificans OS217]
          Length = 762

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/805 (23%), Positives = 320/805 (39%), Gaps = 69/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   S +  ++  ++  +  GL++VS   V   ++   +DG+    +   +I 
Sbjct: 5   MTVTKRSGERESIDLDKIHRVITWSTKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  + P+Y  V AR  +  LR++                      ++  R +E G
Sbjct: 65  AAADLISPDSPDYQFVAARLAVFHLRKKAYGQFEPPSL-----------VDHVTRLVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + +       +L  +   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDKNILTDYTREELEVMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + K   +FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFARYPAETRLKYIKDFYDATSNFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  L  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGQDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           +LFSP +V  ++D +     EFE  Y  YE+          + + AV L+  M+     T
Sbjct: 354 SLFSPSDVPGMYDAFFADQVEFERLYLQYEQDTRIRR----KTLKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       +  SNLC EI L +   +      G I L    A N 
Sbjct: 410 GRIYIQNVDHCNTHSPFDPSVAPIKQSNLCLEIALPTKPLKNIDDPEGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L      AVR LDN++D   + I  A+  +   R +G+G++ F + L     
Sbjct: 470 GAIKDLSELEPLADLAVRALDNLLDYQDYPIISAQLGSMNRRTLGIGVINFANYLAKNGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +   + E I F+ + AS+ LA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 KYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSKGILPIDTYKRDLDA 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +     + W+ L+K +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 ICSEPL----HMDWEALRKDILEHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     +EL+        ++ ++  +DG +                     
Sbjct: 646 ASKDGQLKQVVPDF-DELRD----SYELLWNMPNNDGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   + L      A+ +G+KT YY  +
Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLGAYKLGVKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
           R   S +   +  V  + +      
Sbjct: 735 RDGASDQFDEITAVIEEDDDCAGGA 759


>gi|50120138|ref|YP_049305.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610664|emb|CAG74109.1| ribonucleoside-diphosphate reductase 1 alpha chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 761

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 195/790 (24%), Positives = 310/790 (39%), Gaps = 71/790 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I
Sbjct: 4   SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++                M  L           
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTNMVEL----------- 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSAEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRMDYVKRFYDAISMFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGEE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ A   +    ++I A  L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKASELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I+ A++     R +G+G++ F   L    
Sbjct: 469 LGAINSLDDLEDLATLAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LA+E+GA + F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACTWFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 AI----CNEPLHLDWETLRKDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    + LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D           K+L      A+  G+KT YY 
Sbjct: 673 PNNDGYLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQ 732

Query: 904 RSRSATSVEK 913
            +R      +
Sbjct: 733 NTRDGAEDVQ 742


>gi|289526538|pdb|2X59|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|289526539|pdb|2X59|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|289526540|pdb|2X59|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662336|pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662337|pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
 gi|294662338|pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNL  EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT  Y  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLXYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|317492552|ref|ZP_07950979.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919302|gb|EFV40634.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 761

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 199/832 (23%), Positives = 317/832 (38%), Gaps = 98/832 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVLDWAAEGLSNVSVSQVELRSHIQFYDGIRTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                   LY       +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVK-LVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTPEEFAQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPRDTRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      + K    + AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYMQYEADDSIRKQK----VKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ +   L    
Sbjct: 469 LGVINSLDDLEELAVLAVRALDALLDYQDYPILAAKRGAMGRRTLGIGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ +
Sbjct: 589 ----TICNEPLHYDWEALRNDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                    D LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEY--------------------------------DRLKNAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK+IDQ+ S N   D       +   K+L      A+  G KT YY 
Sbjct: 673 PNNDGYLQLVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGAKTLYYQ 732

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
            +R                         + +        +   D  CE   C
Sbjct: 733 NTR-------------------------DGAEDVQDDLQATPEDDGCESGAC 759


>gi|168205190|ref|ZP_02631195.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170663300|gb|EDT15983.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 743

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    + + ++    E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +               ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EFL +R N GDDR++ HD+      PDLF K    +    W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+ E                         VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSTMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V   L  E    + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVE 912
           +RS+S +  E
Sbjct: 728 VRSKSLSVDE 737


>gi|311032548|ref|ZP_07710638.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus sp.
           m3-13]
          Length = 755

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 242/759 (31%), Positives = 363/759 (47%), Gaps = 91/759 (11%)

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKP 240
            ++    +    ++ +L   LI  +   +++ EP++  V +R L +KL++EV        
Sbjct: 44  ATKIIDKLLHHNNQDELTNQLILEALNHVDELEPDWTYVASRLLSQKLQQEVCRNR---- 99

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
                 +    +        ++G+    + ++    ++  L   +  ++D+ F Y+GL+ 
Sbjct: 100 ---NISKPYTDFYSLIKGLTDQGIYQPQILKAYTHKEVNELEAIIDPQKDYLFTYIGLKT 156

Query: 301 LYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTL 358
           L DRY    +  R+ E+PQ  FM +AM L  KE   +     E Y  LS+ +   +TPT 
Sbjct: 157 LSDRYLTRDHHKRLLELPQERFMIIAMTLMQKEENNRIHYVKEAYWALSNLYMTVATPTF 216

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N+G  + QLSSCF+ TV D L GI+ +  + A L+K  GGLG     +R  G+ I G  
Sbjct: 217 ANAGKTYGQLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGLGVYLGKIRSRGSDIRGFK 276

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             S GVIP++K  N+TAV+V+Q G+RKGA+  YL+ WH D+  FLD + N GD+R RTHD
Sbjct: 277 SVSSGVIPWMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFSFLDSKLNNGDERMRTHD 336

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQ 528
           +     IPD+FM++V     W LF P EV               +    F   YE     
Sbjct: 337 LFNGVCIPDMFMEQVENRGDWYLFDPHEVRKLMGYSLEDFYDESVGAGSFRQKYEECINH 396

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +  + K    + A+ + + ++    ETG P++ ++D  N  +P  H G+++ +NLCTEI
Sbjct: 397 PELPKEK----VPAIEIMKAIMKGQLETGSPFMFYRDEVNRMNPNAHKGMIYCTNLCTEI 452

Query: 589 TLNSS-------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           T N S                     +  VCNL SINL            +L   I   V
Sbjct: 453 TQNQSATITKKQYVEDGTIITVKTPGDFVVCNLSSINLARTIIAG-----QLERLIPIQV 507

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVI++N   + +AK +N  +RAIGLG  G+   L +  I + S EAV  ADE  E 
Sbjct: 508 RMLDNVIELNEIPVLQAKMTNEKYRAIGLGTFGWHHLLAIEGIKWESNEAVLYADELYEK 567

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I+FH I AS  LA+E+G+Y +F+GS W  G +                   +S+L W  L
Sbjct: 568 IAFHTIQASCLLAKEKGSYPAFEGSDWQTGDYFYKRNY-----------GASSKLDWITL 616

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           +K+V   G+RN   MA+AP AT + I G + SIDP +  +Y +        V       +
Sbjct: 617 QKQVANYGVRNGYLMAVAPNATTSIIAGSTASIDPIFLKVYSEEKKDYKIPVTAP----D 672

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L     W                            + +A+ ID  W I   + RQK IDQ
Sbjct: 673 LNAETTW---------------------------FYKSAYHIDQHWSIAQNAARQKHIDQ 705

Query: 870 AQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           A S NLY+      K L  ++  AW   LKTTYY+RS S
Sbjct: 706 AISFNLYVTNTVKAKALLELHLDAWKQKLKTTYYVRSTS 744


>gi|169347148|ref|ZP_02866090.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169296831|gb|EDS78960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 743

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/790 (28%), Positives = 373/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    + + ++    E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +               ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EFL +R N GDDR++ HD+      PDLF K    +    W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S  E                         VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSVMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V   L  E    + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVE 912
           +RS+S +  E
Sbjct: 728 VRSKSLSVDE 737


>gi|285803183|pdb|2X3S|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|285803184|pdb|2X3S|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|285803185|pdb|2X3S|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662329|pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662330|pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
 gi|294662331|pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNL  EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT  Y  
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLXYQN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|326796345|ref|YP_004314165.1| ribonucleoside-diphosphate reductase, subunit alpha [Marinomonas
           mediterranea MMB-1]
 gi|326547109|gb|ADZ92329.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas
           mediterranea MMB-1]
          Length = 754

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 180/782 (23%), Positives = 312/782 (39%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +G   + + +++  ++  A  GL++VS   V  +     ++G+  +D+   LI
Sbjct: 3   TLTVTKRNGVTENIDLEKIHKVITWAAEGLENVSVSQVELKAQIQFFEGIRTTDIHETLI 62

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +  P+Y  + AR  +  LR++                   LY E+ C  +E+
Sbjct: 63  KSAADLISENTPDYQYLAARLAIFHLRKKAFGQFEPP----------RLY-EHVCNLVEQ 111

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 +       +L  +   + + RD  F Y  ++ L  +Y     + G   E PQ  
Sbjct: 112 NRYDAHILNDYSKEELDQINEFIDHSRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFI 171

Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 172 YILVAACLFANYEKETRLDLIKRFYDAVSQFKLSLPTPIMSGIRTPTRQFSSCVLIECGD 231

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 232 SLDSINATSSAVVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 291

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ +   
Sbjct: 292 SQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKGGN 351

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    ++F+  Y  YE+     +      + A  L+    +    
Sbjct: 352 ITLFSPSDVPGLYDAFFADQEKFDRLYTMYEQDDSIRKS----TVKASELFTLFASERAS 407

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L +   E      G I L       
Sbjct: 408 TGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLENVSDPDGEIALCTLSAFN 467

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       +R LD ++D   + I  A+ +    R +G+G++ +   L    
Sbjct: 468 LGALENLDELEELSELIIRALDALLDYQNYPIPAAQNATELRRTLGVGVINYAYYLAKNG 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A E+  ++ E I +  + AS +L++E G   +F  + + +G+ PID+     +
Sbjct: 528 VRYSDGSANELTHKTFEAIQYFLLKASNKLSKEFGPCKAFNETTYSKGILPIDTY----K 583

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 ++      W+ L+K +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 584 EEVNKIVSSELYYDWESLRKDIVEYGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 643

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++  +  +DG +                    
Sbjct: 644 KASKDGILKQVVPEYER-LKDQ----YELLWSIPSNDGYLQ------------------- 679

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQ+ S N   D       +   K +      A+ +G+KT YY  
Sbjct: 680 -------LVGIMQKFVDQSISANTNYDPQKFESQKVPMKVILKDLLTAYKLGVKTLYYHN 732

Query: 905 SR 906
           +R
Sbjct: 733 TR 734


>gi|110800461|ref|YP_697051.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens ATCC 13124]
 gi|168216674|ref|ZP_02642299.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens NCTC 8239]
 gi|110675108|gb|ABG84095.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens ATCC 13124]
 gi|182381125|gb|EDT78604.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens NCTC 8239]
          Length = 743

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    + + ++    E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +               ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EFL +R N GDDR++ HD+      PDLF K    +    W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+ E                         VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V   L  E    + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVE 912
           +RS+S +  E
Sbjct: 728 VRSKSLSVDE 737


>gi|123441722|ref|YP_001005706.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088683|emb|CAL11485.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 761

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/800 (24%), Positives = 319/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS ELA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNELAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +        ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|227328223|ref|ZP_03832247.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 761

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 195/789 (24%), Positives = 309/789 (39%), Gaps = 69/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  ++  A  GL +VS   V   ++   YD +  SD+   +I
Sbjct: 4   SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +E P+Y  + AR  +  LR++               +M  L           
Sbjct: 64  KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGEE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    ++I A  L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAGELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 AI----CNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK        ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEY-ETLKD----SYELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D           K+L      A+  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQN 733

Query: 905 SRSATSVEK 913
           +R      +
Sbjct: 734 TRDGAEDVQ 742


>gi|303253583|ref|ZP_07339721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247986|ref|ZP_07530016.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302647503|gb|EFL77721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855501|gb|EFM87674.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 756

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   
Sbjct: 2   QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI  E P+Y  + AR  +  LR++                       +  + +
Sbjct: 62  IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
             G   + L     + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAIKQLEGKYLVQNRVTGEIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L   
Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +    ++FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             TG  +I   D CN        V  +  SNLC EI L +          G I L     
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+        VR LD ++D   + ++ AK +    R++G+G++ +   L  
Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PIDS    
Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFNETSYAQGILPIDSYKKE 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P    +
Sbjct: 587 LDN----LTTEPLHYDWESLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K++  G    V                                    + L+  +   +
Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670

Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901
           +I D    ++     QK+IDQA S N   D       +   K+L      A+  GLKT Y
Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730

Query: 902 YLRSRSATSVEKSTLKG 918
           Y  +R      +  L  
Sbjct: 731 YQNTRDGAEDAQEDLND 747



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          K + V KRNG    FD  KI R I  A      V       S  +Q      T      +
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|18311343|ref|NP_563277.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens str. 13]
 gi|18146027|dbj|BAB82067.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium
           perfringens str. 13]
          Length = 743

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    + + ++    E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +               ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EFL +R N GDDR++ HD+      PDLF K    +    W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGICYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+ E                         VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V   L  E    + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVE 912
           +RS+S +  E
Sbjct: 728 VRSKSLSVDE 737


>gi|127512874|ref|YP_001094071.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           loihica PV-4]
 gi|126638169|gb|ABO23812.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Shewanella loihica PV-4]
          Length = 762

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 195/802 (24%), Positives = 324/802 (40%), Gaps = 87/802 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G   + +  ++  ++  A  GL +VS   V   ++   YDG+    +   +I 
Sbjct: 5   MQVTKRSGERETIDLDKIHRVITWAAKGLNNVSVSEVELRSHLQFYDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISPESPDYQFLSARLAIFHLRKKAFGQFEPP----------SLYDHVVK-LVELG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                +       +L  L + + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDTHILNDYSREELDTLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +   +FY+  S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFANYPRETRLQYVKDFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+ Q    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIQGGMI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y  YE+     E    ++I AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFEDQAEFERLYVKYEQD----ESIRKKQIKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607
           G  +I   D CN  SP       V  SNLC EI L +           E A+C L ++NL
Sbjct: 410 GRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTKPLNNIDDPDGEIALCTLSALNL 469

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            A         D+L S    AVR LD+++D   + I  A K +   R +G+G++ F + L
Sbjct: 470 GAIKK-----LDELESLADLAVRALDSLLDYQDYPIVSAHKGSMNRRTLGIGVINFANYL 524

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+   A  I  ++ E I ++ + AS+ LA+E+GA  +F  + + +G+ PID+  
Sbjct: 525 AKEGVRYSDGSANGITHKTFEAIQYYLLKASMNLAKEQGACPAFHETNYAKGILPIDTYK 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       +    + W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 585 RDLDKI----CDEPLHMDWETLRGEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VK++  G    V             +   ++  +  ++G +                
Sbjct: 641 LISVKASKDGQLKQVVPDFEK-----YQYSYELLWQMPGNEGYLQ--------------- 680

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
                           QK++DQ+ S N           +   + L      A+  G+KT 
Sbjct: 681 -----------LVGLMQKFVDQSISANTNYDPSRFPGAKVPMQVLLKDLLTAYKYGVKTL 729

Query: 901 YY--LRSRS------ATSVEKS 914
           YY   R  +       TS+EK 
Sbjct: 730 YYHNTRDGASDKYDDITSIEKE 751


>gi|325261083|ref|ZP_08127821.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. D5]
 gi|324032537|gb|EGB93814.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           sp. D5]
          Length = 763

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 239/830 (28%), Positives = 383/830 (46%), Gaps = 117/830 (14%)

Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAP----KLKIMMDDGTLISFNSKRLEMIVEEACS 171
           + Y+LYRE R+  R ++     +    P     L  +  D +   +  ++L    +    
Sbjct: 2   KSYILYRERRARRRYSRQRIADEFQAVPGLVGVLTSIQKDFSQEEYELEQLSARFQAF-- 59

Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230
                            +  GL++ +    L+ +   L  +E P +  + AR  +   + 
Sbjct: 60  -----------------LSPGLTDMEKLAVLVKACAELTTQEAPKWEMIAARVRMLSFQI 102

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           ++   +      + + +             E+G+    + E     ++      L  +R+
Sbjct: 103 QLNVQMEAFHIHSFYEK--------ISWLTEQGLYGNYILEHYTQAEIEEFGTWLCAKRN 154

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSS 348
             F +  L++L  RY +    G  +E PQ  FM +AM LA+KE + +      FY++LS+
Sbjct: 155 DLFTFSSLELLLGRYTICGRAGEPLETPQEMFMGIAMHLAMKEKQDRSAWVRRFYDMLST 214

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A ++KY GG+G  +  VR
Sbjct: 215 LKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDNFAKVSKYGGGMGMYFGKVR 274

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ I G  G + GVI ++++ANDTAVAV+Q G R+GAV  YL+ WH D+ EFL+LR N
Sbjct: 275 ASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLNLRTN 334

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521
            GD+R + HD+  A   PD F K+   +    W L  P E+       L D +G+ +E  
Sbjct: 335 NGDERMKAHDVFPAVCYPDYFWKQARDHIDGDWYLMCPHEILTIKGYALEDSFGEAWEEK 394

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y +  R     E    R I    + R ++    ETG P+   +D  N  +P  H GV++ 
Sbjct: 395 YLDCVRD----ERIRKRVIPIKDVLRLIIRSAVETGTPFAFNRDTVNKANPNGHKGVIYC 450

Query: 582 SNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDY 618
           SNLCTEI  N S                         E  VCNL S++L         DY
Sbjct: 451 SNLCTEIAQNMSAIELEEQRTEEVDGETVVVTVTKPGEFVVCNLASLSLGHIDVE---DY 507

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           ++L+    +AVR LDNVID+N   +  A+ +N  +R +GLG+ G+   L    I + S E
Sbjct: 508 NELSYITESAVRALDNVIDLNFFPVPYARINNQRYRPVGLGVSGYHHMLAKYGIRWESQE 567

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
            ++ A++    I + A++AS  +A+E+G+Y+ F+GS W  G              +    
Sbjct: 568 HLDFAEKVFSDIHYAAVNASCSIAEEKGSYAYFEGSAWQTG--------------EYFRQ 613

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                  W++L  RV   G+RN   +A APT++ + I G +  +DP     +++   +G 
Sbjct: 614 RNLVDDRWEQLAGRVAAFGLRNGYLLAAAPTSSTSIIAGTTAGLDPVMNRYFLEEKKNGL 673

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V      +L     W                            +  A  ID  W + 
Sbjct: 674 MPRVAP----DLSMETFW---------------------------YYKNAHLIDQTWSVR 702

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +   RQ+ IDQAQS+NLY+ +E + + +  +Y QAW  G+KT YY+RSRS
Sbjct: 703 ACGIRQRHIDQAQSMNLYITNEYTFRGVLNLYLQAWEEGVKTIYYIRSRS 752


>gi|332993181|gb|AEF03236.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas sp.
           SN2]
          Length = 773

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/832 (22%), Positives = 318/832 (38%), Gaps = 84/832 (10%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             L +   +G   S + +++  +V  A  GL++VS   V  +     +DG++ S++   L
Sbjct: 3   NSLSVTKRNGEQESIDLEKIHKVVTWAAKGLENVSVSQVEIKAQIQFFDGINTSEIHETL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI  + P+Y  + AR  +  LR++                      E+    +E
Sbjct: 63  IKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------FEHVTNMVE 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q 
Sbjct: 112 MGKYDKHLIEDYTAEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    
Sbjct: 172 LYILVAACLFANYPKDTRMSYIRRFYDAASTFKLSLPTPIMSGVRTPTRQFSSCVLIETG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++ 
Sbjct: 292 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKDD 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D +    ++FE  Y  YE   +  +    ++I A+ L+   +    
Sbjct: 352 YISLFSPSDVPGLYDAFFADQEKFERLYVQYENDDNIRK----KRIKAMELFSLFMQERA 407

Query: 555 ETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  ++   D CN        V  V  SNLC EI L +   +      G I L      
Sbjct: 408 STGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDEEGEIALCTLSAF 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D+       AVR LDN++D   + +  A  +    R +G+G++ F   L   
Sbjct: 468 NLGAIKSLDEFEELSDLAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +   + E + ++ + AS  LA+E+GA   F  + + QG+ PIDS     
Sbjct: 528 GVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDSYKKDL 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       N      WD L++ +KT G+RNS   A+ P+ T + I   +  ++P    + 
Sbjct: 588 DGV----CNEPLHYDWDALREEIKTHGLRNSTLSALMPSETSSQISNATNGVEPPRGFIS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +KS+  G    V                 ++ D+  +DG +                   
Sbjct: 644 IKSSKDGVLKQVVPEYERL-----RDQYELLWDIPSNDGYLQ------------------ 680

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                        QK+IDQ  S N          ++   K L       + +G+KT YY 
Sbjct: 681 --------LVGIMQKFIDQTISANTNYDPSRYDGNKVPMKLLLKDLLTTYKLGVKTLYYH 732

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
            +R             DG  +A  +    +             D +C    C
Sbjct: 733 NTR-------------DGATDASALDVKANEPLPRQEEVVIEEDDDCAGGAC 771


>gi|307250238|ref|ZP_07532193.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857724|gb|EFM89825.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 756

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/793 (22%), Positives = 307/793 (38%), Gaps = 72/793 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   
Sbjct: 2   QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI  E P+Y  + AR  +  LR++                       +  + +
Sbjct: 62  IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
             G   + L     + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L   
Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +    ++FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             TG  +I   D CN        V  +  SNLC EI L +          G I L     
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+        VR LD ++D   + ++ AK +    R++G+G++ +   L  
Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PIDS    
Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P    +
Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K++  G    V                                    + L+  +   +
Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670

Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901
           +I D    ++     QK+IDQA S N   D       +   K+L      A+  GLKT Y
Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730

Query: 902 YLRSR-SATSVEK 913
           Y  +R  A   ++
Sbjct: 731 YQNTRDGAEDAQQ 743



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          K + V KRNG    FD  KI R I  A      V       S  +Q      T      +
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|110802610|ref|YP_699621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           perfringens SM101]
 gi|110683111|gb|ABG86481.1| ribonucleoside-diphosphate reductase, alpha chain [Clostridium
           perfringens SM101]
          Length = 743

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 226/787 (28%), Positives = 374/787 (47%), Gaps = 95/787 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    + + ++    E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMEEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV T    +     +               ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRTNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EFL ++ N GDDR++ HD+      PDLF K    +    W +  P E+    
Sbjct: 300 AWHKDLPEFLQIKTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+ E                         VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V   L  E    + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSAT 909
           +RS+S +
Sbjct: 728 VRSKSLS 734


>gi|88859280|ref|ZP_01133920.1| ribonucleotide-diphosphate reductase alpha subunit
           [Pseudoalteromonas tunicata D2]
 gi|88818297|gb|EAR28112.1| ribonucleotide-diphosphate reductase alpha subunit
           [Pseudoalteromonas tunicata D2]
          Length = 760

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 196/797 (24%), Positives = 319/797 (40%), Gaps = 70/797 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG     +  ++  ++E A  GL +VS   V  +++   YDG+   D+   +I
Sbjct: 4   QLSVSKRDGRKELLDLDKIHRVIEWAAKGLNNVSVSQVELKSHIQFYDGIRTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++   I KE P+Y  + AR  +  LR++                   LY       +E+
Sbjct: 64  KAAADQISKESPDYQFLAARLAIFHLRKKAYGQFEPP----------RLYDHVVKM-VED 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 L       +   L   L + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 NRYDAHLLADYTQAEFEQLDEVLDHNRDLTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     ++ +      FY+ +S F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAASLFSKYPQSIRLDYIKRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G D  R   ++       +   R+ ++  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKVMYSRLIKDDY 352

Query: 499 WTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D + ++   FE  Y  YE+     +    ++I A+ L+   +     
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQALFESLYVQYEQDPAIRK----KRIKAIELFSMFVQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       +  SNLC EI L +   +  +   G I L       
Sbjct: 409 TGRIYLQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLKHVMDEEGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LDN++D   + +  AK +    R +G+G++ +   L    
Sbjct: 469 LGAIDSLDELEELAELAVRALDNLLDYQDYPVPAAKNATMNRRTLGVGVVNYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 KKYSDGSANALTHQTFEAIQYYLMKASNELAKEKGACPKFHETTYSQGLMPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +    RL WD L++ +K  GMRNS   A+ P+ T + I   +  I+P   ++ V
Sbjct: 589 QICSEPL----RLDWDGLRQSIKQYGMRNSTLSALMPSETSSQISNATNGIEPPRGHVSV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V       LK +      ++ D+  +DG +                    
Sbjct: 645 KASKDGILKQVVPEYER-LKDQ----YELLWDIPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ  S N   D       +   K L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQTVSANTNYDPGKFEGGKVPMKLLLKDLLTAYKFGVKTLYYHN 733

Query: 905 SR-SATSVEKSTLKGVD 920
           +R  A+  +   +   D
Sbjct: 734 TRDGASDAQNEIVADAD 750


>gi|168213272|ref|ZP_02638897.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens CPE str. F4969]
 gi|182625796|ref|ZP_02953563.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens D str. JGS1721]
 gi|170715231|gb|EDT27413.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908952|gb|EDT71439.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 743

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    + + ++    E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +               ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507
            WH D+ EFL +R N GDDR++ HD+      PDLF K    +    W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+ E                         VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V   L  E    + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVE 912
           +RS+S +  E
Sbjct: 728 VRSKSLSVDE 737


>gi|318606421|emb|CBY27919.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 761

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 194/800 (24%), Positives = 317/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ A   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|33519929|ref|NP_878761.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Blochmannia floridanus]
 gi|33504275|emb|CAD83167.1| ribonucleoside-diphosphate reductase 1 alpha chain [Candidatus
           Blochmannia floridanus]
          Length = 761

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 190/795 (23%), Positives = 322/795 (40%), Gaps = 69/795 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     N  ++  ++  A  GL+ +S   V   ++   Y+G+  SD++  +I 
Sbjct: 5   LFVTKRNGHQEPINLDKIHRVINWAAKGLEKISVSQVELRSHIQFYNGIKTSDIQETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  + AR  +  LR++                   LY       ++ G
Sbjct: 65  AAADLISQEEPDYQYLAARLTVFHLRKKAYGQFEPP----------KLYNHVLH-LVKIG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
              + L       +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDKNLVNDYNHKEFEEMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGKIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + +A  L     E  + K    FYN +S+F    +TP +    T   Q SSC L    D+
Sbjct: 174 ILIAACLFAKYPEHIRMKYIKNFYNAISTFKISLATPIMAGVRTPTRQFSSCVLIECDDN 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R +G+ I        G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVAQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH+++E  L L+ N G D  R   ++    I  L  +R+      
Sbjct: 294 QGGVRGGAATLFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLITGKYI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V DL++ +     +FE  Y  YE+  +       RKI ++ L+  M+     T
Sbjct: 354 TLFSPSDVPDLYENFFSDQNKFEYLYHKYEQNHNIR----HRKIKSIELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN        +  +  SNLC EITL +          G I L        
Sbjct: 410 GRIYIQNADHCNSHSPFNSALAPIRQSNLCLEITLPTKPLNNINDINGEIALCTLSALNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
            N  +   L+      +R LD ++D   + I  A+ S    R++G+G++ +   L    +
Sbjct: 470 GNINNLQDLSELADLIIRALDALLDYQKYPIHAAQHSAINRRSLGIGVINYAYYLAKNKV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +   + E I +H + AS  LA+E+GA   FK + + QG+ PID+     + 
Sbjct: 530 RYSDGSANTLTHRTFEAIQYHLLKASNNLAKEKGACIWFKDTTYSQGILPIDTYKKDLDD 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +N      W+ L+K +K  G+RNS   A+ P+ T + I   +  I+P    L +K
Sbjct: 590 I----INEPLHYDWEHLRKSIKQYGLRNSTVSALMPSETSSQIANATNGIEPPRGYLSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++ +G    V              +  ++  +  + G                       
Sbjct: 646 ASKNGILRQVIPDFKQLAS-----NYELLWQIPNNQG----------------------- 677

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               ++     QK+IDQ+ S NL          +   K+L      A+ +G+KT YY  +
Sbjct: 678 ---YLKLVGIMQKFIDQSISTNLNYDPNRFPGSKVPIKQLIADLLYAYKLGIKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVD 920
           R  +S  + TL+   
Sbjct: 735 RDGSSETQETLQYNQ 749


>gi|332162348|ref|YP_004298925.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666578|gb|ADZ43222.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864219|emb|CBX74277.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Yersinia
           enterocolitica W22703]
          Length = 761

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 194/800 (24%), Positives = 317/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ A   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|149911237|ref|ZP_01899860.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp.
           PE36]
 gi|149805691|gb|EDM65690.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp.
           PE36]
          Length = 757

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 187/794 (23%), Positives = 316/794 (39%), Gaps = 70/794 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +    G   + + +++  +++ A  GL +VS  +V  +++   YDG+   D+   +I 
Sbjct: 5   LLVTKRSGKQETIDLEKIHRVIKWAAKGLDNVSVSLVELKSHIQFYDGIRTEDIHETMIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI +E P+Y  ++AR  +  LR++                      ++    ++  
Sbjct: 65  AAADLISEEAPDYQYLSARLAVFHLRKKAYGKFEPPAL-----------YDHVKFNVDAL 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L       +   +   + + RD  F Y  ++ L  +Y     I G   E PQ  +
Sbjct: 114 RYDAHLLADYTAEEFAEMDEFVDHWRDMNFSYGAIKQLEGKYLLQNRITGEIFESPQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     ++ +      FY   S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAASLFATYDKSVRMDYVRRFYEATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINAVSNSIVKYVSQRAGIGINAGRIRALGSSIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+  N   
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQLNRLMYQRLIDNKDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y  YE+     +    + I A  L+  ++     T
Sbjct: 354 TLFSPSDVDGLYDAFFQDQDEFERLYNLYEQDPSIRK----QTIKASELFALLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       +  SNLC EI L +   +      G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPMQHPGDEDGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L +    AVR LD+++D   + +  A+KS    R++G+G++ +   L    +
Sbjct: 470 GAIKDLSELENLSDLAVRALDSLLDYQDYPMPAAEKSTMARRSLGIGVINYAYYLAKNGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +   + E I F+ + AS+ L++ERG   +F  + + QG+ PID+     + 
Sbjct: 530 KYSDGSANNLTHRTFEAIQFYLLKASMNLSKERGPCLAFHETTYAQGILPIDTYKSSLDE 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +    L W+ L+  +K  G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 I----CDEALHLDWETLRSEIKEHGLRNSTLTALMPSETSSQISNATNGIEPPRGLISIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V     N           ++ ++  + G +                     
Sbjct: 646 ASKDGILKQVVPDYENL-----RDSYELLWNIPSNTGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +     L      A+  GLKT YY  +
Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPQRFPGQKVPMTTLLTDLMLAYKYGLKTLYYHNT 734

Query: 906 R-SATSVEKSTLKG 918
           R  A+ V+      
Sbjct: 735 RDGASDVDVVKEDE 748


>gi|253989036|ref|YP_003040392.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780486|emb|CAQ83648.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Photorhabdus
           asymbiotica]
          Length = 763

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 190/802 (23%), Positives = 313/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +V  A  GL++VS   V   +    YD +  SD+   +I
Sbjct: 4   SLLVTKRDGHKERIDLDKIHRVVAWAADGLKNVSVSQVELRSQIQFYDSIKTSDIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  + P+Y  + AR  +  LR++                      ++  R +E 
Sbjct: 64  KAAADLISGDAPDYQYLAARLAIFNLRKKAYGQFEPPAL-----------YDHVSRMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLADYSKEEFEQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSSYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R +G+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ ++       +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFTNQDEFERLYTKYEQDSNIR----QQRLKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + I  AK+     R +G+G++ +   L    
Sbjct: 469 LGAIENLDELEELAILAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   FK + + QG+ PID+     +
Sbjct: 529 ARYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSQGILPIDTYKKTLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P    + +
Sbjct: 589 ----TLTNEPLHYDWETLRSDIKQYGLRNSTLSSLMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              D  ++  +  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKG-----DYELLWQMPGNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D            +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPARFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQDDLEEVVESADSD 755


>gi|46143781|ref|ZP_00134248.2| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208466|ref|YP_001053691.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae L20]
 gi|190150314|ref|YP_001968839.1| ribonucleoside-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303251075|ref|ZP_07337261.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307245898|ref|ZP_07527983.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307252628|ref|ZP_07534521.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307254870|ref|ZP_07536695.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259313|ref|ZP_07541042.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307261474|ref|ZP_07543144.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307263657|ref|ZP_07545268.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126097258|gb|ABN74086.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915445|gb|ACE61697.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302650085|gb|EFL80255.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306853258|gb|EFM85478.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306859873|gb|EFM91893.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306862167|gb|EFM94136.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866680|gb|EFM98539.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306868826|gb|EFN00633.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871034|gb|EFN02767.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 756

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   
Sbjct: 2   QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI  E P+Y  + AR  +  LR++                       +  + +
Sbjct: 62  IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
             G   + L     + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L   
Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +    ++FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             TG  +I   D CN        V  +  SNLC EI L +          G I L     
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+        VR LD ++D   + ++ AK +    R++G+G++ +   L  
Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PIDS    
Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P    +
Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K++  G    V                                    + L+  +   +
Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670

Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901
           +I D    ++     QK+IDQA S N   D       +   K+L      A+  GLKT Y
Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730

Query: 902 YLRSRSATSVEKSTLKG 918
           Y  +R      +  L  
Sbjct: 731 YQNTRDGAEDAQEDLND 747



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          K + V KRNG    FD  KI R I  A      V       S  +Q      T      +
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|37526940|ref|NP_930284.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786373|emb|CAE15426.1| ribonucleoside-diphosphate reductase 1 alpha chain (ribonucleotide
           reductase 1) (B1 protein) (R1 protein) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 763

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/802 (23%), Positives = 318/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGHKERIDLDKIHRVVNWAADGLKNVSVSQVELRSQIQFYDGIKTSDIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            +S  LI  + P+Y  + AR  +  LR++                   LY ++  R ++ 
Sbjct: 64  KASADLISGDAPDYQYLAARLAIFNLRKKAYGQFEPP----------SLY-DHVSRMVKM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLADYSKEEFEQMNEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSGYPKETRLDYIRRFYDAASTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGEE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     EFE  Y  YE+ ++       +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDEFERLYTKYEQDSNIR----QQRLKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP   +   V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + I  AK+     R +G+G++ +   L    
Sbjct: 469 LGAIENLDELEELATLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+E+GA   FK + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSKGILPIDTY----K 584

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              +   N      W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P    + +
Sbjct: 585 KALDTLTNEPLHYDWEALRNEIKQYGLRNSTLSSLMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++  +  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWQMPGNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D       +    +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTHFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDIQDDLEEVVESADSD 755


>gi|255658864|ref|ZP_05404273.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849269|gb|EEX69276.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella
           multacida DSM 20544]
          Length = 755

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 228/766 (29%), Positives = 367/766 (47%), Gaps = 95/766 (12%)

Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTT 235
               ++ +    +   L  ++   AL+ ++  L   E P++ K+ AR       R++   
Sbjct: 39  DFSALVEKYEVFVKPSLQAAEKLQALVRAAVELASAEAPHWDKIAARLRYLVFARQLSED 98

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
             ++       +++ L          +G+    + E   + +L   A  +  ER+  + Y
Sbjct: 99  EARRGITNFVAKLRYL--------TAKGLYGSYILEHYTERELSAAARFMAEERNHLYTY 150

Query: 296 LGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352
            GL +L  RY +H  +G  +E PQ  ++ +A+ LA+ E    +      FY++LS     
Sbjct: 151 AGLDLLLSRYVIHTHHGVALESPQEMYLGIALHLAMLELPAVRMDWVRRFYDMLSLQQVT 210

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TPTL N+   + QLSSCF+ TVPD L GI+ +L   A ++K+ GG+G  +  VR  GA
Sbjct: 211 MATPTLANARKPYHQLSSCFIDTVPDSLEGIYRSLDSFAKVSKWGGGMGLYFGKVRATGA 270

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I G  G + GVI ++++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDD
Sbjct: 271 AIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGACAVYLDAWHKDLPEFLQLRTNNGDD 330

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENY 525
           R + HD+  A   PDLF K   ++    W L  P E+       L D +G+E+E  Y   
Sbjct: 331 RMKAHDIFPAVCYPDLFWKLAKEDLDAPWFLMDPHEIEMVMGYALEDFWGEEWEKRYRAC 390

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +    +    R IS   + R +L  + ETG P+  ++D  N  +P    G+++ SNLC
Sbjct: 391 VAEPRIDK----RVISVKEIVRLILKSVVETGTPFAFYRDTVNRLNPNPQAGMIYCSNLC 446

Query: 586 TEITLNSSSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLA 622
           TEI  N S  E                         VCNL S+NL      +   +++L 
Sbjct: 447 TEIAQNMSPVEAVSTEIRTKDGDTVVQVTTRPGDFVVCNLASLNLGRIDVTS---HEELR 503

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           + +RTAVR LDNVID+N   +  AK +N  +R+IGLG+ G+   L    I + S E +  
Sbjct: 504 TVVRTAVRALDNVIDLNEAPLAYAKLTNAKYRSIGLGVSGYHHMLAKNAIRWESEEHLAF 563

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            D+    I++ AI AS +LA E+G Y  F GS W  G                       
Sbjct: 564 VDDVFARINYAAIEASSDLAAEKGTYGCFAGSDWQTG--------------AYFKKRGYM 609

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W +L  +V+  GMRN+  +A+APT++ + + G +  +DP  +  +++         +
Sbjct: 610 SEAWQKLAAKVRAQGMRNAYLLAVAPTSSTSILVGTTAGVDPIMKRFFLEEKKGAILPRI 669

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                 +L  +  W                            + +A  +D  W + +A  
Sbjct: 670 AP----DLSMKTYW---------------------------YYKSAHTVDQNWSVRAAGV 698

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           RQ+ IDQAQS+NLY+ ++ + +++  +Y +A+  G+KT YY+RS+S
Sbjct: 699 RQRHIDQAQSVNLYITNDFTFRQVLALYIRAYEEGVKTIYYVRSKS 744


>gi|93005950|ref|YP_580387.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           cryohalolentis K5]
 gi|92393628|gb|ABE74903.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter cryohalolentis K5]
          Length = 758

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 184/796 (23%), Positives = 323/796 (40%), Gaps = 69/796 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            K+++   DG L      ++  ++E A  GL +VS   V  +++   Y+G+   D+   +
Sbjct: 5   DKIQVTKRDGRLEPIELDKIHKVIEWAAHGLDNVSVSQVELKSHIQFYEGIKTRDIHETI 64

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI ++ P+Y  + AR  +  LR+                       ++  +  +
Sbjct: 65  IKSAADLISEDTPDYQYLAARLAIFHLRKIAYNKFTPPHL-----------YDHVKKLTD 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + +       +   L   L + RD    Y  ++ +  +Y     ++ +  E PQ 
Sbjct: 114 AGKYDQHILADYSRAEFDELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            +M V M L    +++E+      FY+  S F     TP +    T   Q SSC L    
Sbjct: 174 LYMLVGMCLFSRYEKSERMNYVKRFYDATSEFKISLPTPIMSGVRTPSRQFSSCVLIECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G   +  G IPF K+       
Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIKGQ 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +   L+D +     +FE  Y  YE           R+I A  L+  M+    
Sbjct: 354 DISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPAIR----SRQIPAADLFSLMMQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L +   +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDATVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLSAV 469

Query: 614 N---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N     +   +       VR LD ++D   + ++ A+  +   R +G+G++ +   L   
Sbjct: 470 NLGKVENVSDIEEPAELIVRALDALLDYQDYPVKAAQNGSMRRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A+ +  ++ E + F+ + AS +LA+E+GA  +F  + + QG+ PID+     
Sbjct: 530 GVRYSDDSAIGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DKI----CQEPLHLDWETLRGEITEHGLRNSTLTALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V    +N+LK +      ++  +  +DG                     
Sbjct: 646 IKASKDGILKQVVPE-INKLKNQ----YELLWQMPNNDG--------------------- 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++  +  QK++DQ+ S N   D           K L      A+ +G+KT YY 
Sbjct: 680 -----YLKLVAVMQKFVDQSISANTNYDPVRYEGGRVPMKILLKDLLNAYKLGVKTLYYH 734

Query: 904 RSRSATSVEKSTLKGV 919
            +R   +  ++ ++  
Sbjct: 735 NTRDGANDAQADMEDD 750


>gi|165976418|ref|YP_001652011.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876519|gb|ABY69567.1| ribonucleoside-diphosphate reductase, alpha chain [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 756

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   
Sbjct: 2   QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI  E P+Y  + AR  +  LR++                       +  + +
Sbjct: 62  IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
             G   + L     + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L   
Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIIAGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +    ++FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             TG  +I   D CN        V  +  SNLC EI L +          G I L     
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+        VR LD ++D   + ++ AK +    R++G+G++ +   L  
Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PIDS    
Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P    +
Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K++  G    V                                    + L+  +   +
Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670

Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901
           +I D    ++     QK+IDQA S N   D       +   K+L      A+  GLKT Y
Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730

Query: 902 YLRSRSATSVEKSTLKG 918
           Y  +R      +  L  
Sbjct: 731 YQNTRDGAEDAQEDLND 747



 Score = 43.7 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          K + V KRNG    FD  KI R I  A      V G     S  +Q      T      +
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|168210335|ref|ZP_02635960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711563|gb|EDT23745.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 743

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 228/790 (28%), Positives = 375/790 (47%), Gaps = 95/790 (12%)

Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216
           LE     +   L D +      +    + + ++    E ++  + I  S  L  + EP +
Sbjct: 4   LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ A+  ++ L  EV      +     +               ++G+  + + ++    
Sbjct: 64  QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334
           D+  L  ++K ERDF F Y G+ +L  RY +   N   +E+PQ  FM +AM LA+ E + 
Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            +   A  FY++LSS     +TPT+ N+     QLSSCF+ TV D L GI+ +L   + +
Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K+ GG+G     VR LG+ I G  G S G+IP++K+ NDTA+AV+Q G R G+V  +L+
Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV---- 507
            WH D+ EFL +R N GDDR++ HD+      PDLF K    +  A W +  P E+    
Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIEANWYMMCPHEIKTVK 359

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
              L D YG+E+E  Y          +    R +S   + R ++    ETG P+  ++D 
Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603
            N  +P +H G+++SSNLCTEI  N S+ E                         VCNL 
Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDFVVCNLS 475

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+ L      +    +++   + T +R +DNVID+N +++  A+ +N  +RA+GLG  G+
Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    I + S E +   D+  E I+F+AI AS+ +A+E+G+Y  F+GS W  G    
Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D   +   +   W ELK+ +   GMRN    A+AP  + A + G S+ +D
Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P     +++         V   L  E    + W                           
Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +A+ ++  + + +   RQ+ IDQ QS NLY+  + + +++  +Y  A   G+K+ YY
Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727

Query: 903 LRSRSATSVE 912
           +RS+S +  E
Sbjct: 728 VRSKSLSVDE 737


>gi|194377960|dbj|BAG63343.1| unnamed protein product [Homo sapiens]
          Length = 454

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/467 (35%), Positives = 263/467 (56%), Gaps = 18/467 (3%)

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           MKRV  N  W+L  P+E   L +++G+EFE  Y +YE+Q      +V + + A  LW  +
Sbjct: 1   MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAI 55

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  
Sbjct: 56  IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNM 115

Query: 610 H-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           +  + + +D+ KLA   +  VR L+ +IDIN + + +A  SN  HR IG+G+ G   A  
Sbjct: 116 YVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFI 175

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L+  P+ S EA  +  +  E I + A+ AS +LA+E+G Y +++GS   +G+   D   +
Sbjct: 176 LMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNV 235

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                       T    W  LK+++   G+RNS  +A  PTA+ A I G ++SI+P   N
Sbjct: 236 TP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSN 285

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +Y +  +SG+F +VN  L+ +L +R LW E M + +   +GSI +I  IPDDLK+++ T 
Sbjct: 286 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTV 345

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
           +EI    +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR+R 
Sbjct: 346 WEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRP 405

Query: 908 ATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           A +  + TL          V   +     ++  +  S  +  EC +C
Sbjct: 406 AANPIQFTLNKERLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 452


>gi|71065820|ref|YP_264547.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter
           arcticus 273-4]
 gi|71038805|gb|AAZ19113.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychrobacter arcticus 273-4]
          Length = 758

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 184/797 (23%), Positives = 318/797 (39%), Gaps = 71/797 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            K+++   DG L   +  ++  ++E A   L++VS   V  +++   Y+G+   D+   +
Sbjct: 5   DKIQVTKRDGRLEPIDLDKIHKVIEWAAHNLENVSVSQVELKSHIQFYEGIKTRDIHETI 64

Query: 203 IFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI E  P+Y  + AR  +  LR+                       ++  +  +
Sbjct: 65  IKSAADLISETTPDYQYLAARLAIFHLRKIAYNRFTPPHL-----------YDHVKKLTD 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G     +       +   L   L + RD    Y  ++ +  +Y     ++ +  E PQ 
Sbjct: 114 AGKYDAHILADYSRAEFDELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQF 173

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            +M V M L     + E+      FY+  S F     TP +    T   Q SSC L    
Sbjct: 174 LYMLVGMCLFASYDKAERLDYVKRFYDATSEFKISLPTPIMSGVRTPSRQFSSCVLIECG 233

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G   +  G IPF K+       
Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +      R+ +  
Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIKGQ 353

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +   L+D +     +FE  Y  YE           R+I A  L+  M+    
Sbjct: 354 DISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPTIR----SRQIPAADLFSLMMQERA 409

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            TG  +I   D CN  SP    V  +  SNLC EI L +   +      G I L    A 
Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEAGEIALCTLSAV 469

Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
           N    + ++         VR LD ++D   + ++ A+  +   R +G+G++ +   L   
Sbjct: 470 NLGKVEHVSDIEEPAELIVRALDALLDYQDYPVKAAQNGSMRRRTLGVGVINYAYYLAKN 529

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A+ +  ++ E + F+ + AS +LA+E+GA  +F  + + QG+ PID+     
Sbjct: 530 GVRYSDDSALGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILPIDTYKKDL 589

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +            L W+ L+  + T G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 590 DKI----CQEPLHLDWETLRTEITTHGLRNSTLTALMPSETSSQIANATNGIEPPRGLVS 645

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K++  G    V   +                                D LK  +   ++
Sbjct: 646 IKASKDGILKQVVPEI--------------------------------DKLKDQYELLWQ 673

Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYY 902
           +      ++  +  QK++DQ+ S N   D           K L      A+ MG+KT YY
Sbjct: 674 MPNNDGYLKLVAVMQKFVDQSISANTNYDPVRYEGGRVPMKILLKDLLNAYKMGVKTLYY 733

Query: 903 LRSRSATSVEKSTLKGV 919
             +R   +  ++ ++  
Sbjct: 734 HNTRDGANDAQADMEDD 750


>gi|87120531|ref|ZP_01076425.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp.
           MED121]
 gi|86164174|gb|EAQ65445.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp.
           MED121]
          Length = 755

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/782 (23%), Positives = 308/782 (39%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +G   S N +++  +V  A  GL +VS   V  +     ++G+  +D+   LI
Sbjct: 3   TLTVTKRNGETESINLEKIHKVVTWAAEGLDNVSVSQVELKAQIQFFEGIKTTDIHETLI 62

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI ++ P+Y  + AR  +  LR++           A           +    +E+
Sbjct: 63  KSAADLISEDTPDYQYMAARLAIFHLRKKAFGEFEPPHLLA-----------HVQNLVEQ 111

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
                 +  +  + +   L   L + RD  F Y  ++ L  +Y     + G   E PQ  
Sbjct: 112 KRYDAEILSAYSEAEFDQLNGFLDHSRDMNFSYAAVKQLEGKYLVQNRVTGDIYESPQFI 171

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 172 YLLVAACLFANYDASVRLDYIRRFYDAVSNFKISLPTPIMAGIRTPTRQFSSCVLIECGD 231

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 232 SLDSINATSSAIVKYVSQRAGIGINAGAIRALGSAIRGGEAFHTGCIPFYKHFQTAVKSC 291

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+     
Sbjct: 292 SQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLISGGN 351

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE      +    + I A  L+    +    
Sbjct: 352 ITLFSPSDVPGLYDAFFADQEEFERLYVQYEADDSVRK----QTIKASELFTLFASERAS 407

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 408 TGRIYLQNVDHCNTHSPFDPAVAPVKQSNLCLEIALPTKPLQHIYDEKGEIALCTLSAFN 467

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             +    D+L       VR LD+++D   + +  A+ +    R +G+G++ +   L    
Sbjct: 468 LGSLESLDELEELSDLIVRALDSLLDYQNYPVPAAQSATDLRRTLGVGVINYAYYLAKNG 527

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A E+  ++ E I ++ + AS  L++ERGA  +F  + + +G+ PIDS     +
Sbjct: 528 VRYSDGSANELTHKTFEAIQYNLLKASNNLSKERGACQAFDETTYAKGILPIDSYKKEID 587

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +       W+ L+K +   G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 588 KVCSPEL----YYDWETLRKDIVEHGLRNSTLTALMPSETSSQIHNATNGIEPPRGFVSV 643

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V         +       ++  +  +DG +                    
Sbjct: 644 KASKDGILKQVVPEFERLKDEY-----ELLWSIPSNDGYLQ------------------- 679

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D           K L      A+ +G+KT YY  
Sbjct: 680 -------LVGIMQKFVDQAISANTNYDPAKFESSKVPMKLLLKDLLTAYKLGIKTLYYHN 732

Query: 905 SR 906
           +R
Sbjct: 733 TR 734


>gi|307257035|ref|ZP_07538811.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306864519|gb|EFM96426.1| Ribonucleoside-diphosphate reductase 1 subunit alpha
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 756

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G    F+  ++  ++  A  GL +VS   V    +   Y G+  +D+   
Sbjct: 2   QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI  E P+Y  + AR  +  LR++                       +  + +
Sbjct: 62  IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
             G   + L     + +   +   L + RD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L   
Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSSIRQGEAFHTGCIPFYKHFQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH++ E  L L+ N G +  R   M+    +  L  +R+ + 
Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350

Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
              TLFSP +V  L++ +    ++FE  Y  YE+     +    R + AV L+  ++   
Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406

Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             TG  +I   D CN        V  +  SNLC EI L +          G I L     
Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  + D+        VR LD ++D   + ++ AK +    R++G+G++ +   L  
Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+   A  +   + E + ++ + AS+ LA+E+GA   F  + + QG+ PIDS    
Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  +K  G+RNS   ++ P+ T + I   +  I+P    +
Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K++  G    V                                    + L+  +   +
Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670

Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901
           +I D    ++     QK+IDQA S N   D       +   K+L      A+  GLKT Y
Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730

Query: 902 YLRSRSATSVEKSTLKG 918
           Y  +R      +  L  
Sbjct: 731 YQNTRDGAEDAQEDLND 747



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
          K + V KRNG    FD  KI R I  A      V       S  +Q      T      +
Sbjct: 3  KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62

Query: 84 LQ 85
          ++
Sbjct: 63 IK 64


>gi|238761951|ref|ZP_04622924.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
 gi|238699679|gb|EEP92423.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
          Length = 761

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/801 (23%), Positives = 317/801 (39%), Gaps = 71/801 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                                      LK  +   +E+
Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDAYELLWEM 672

Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903
                 ++     QK++DQA S N   D       +   K+L       +  G+KT YY 
Sbjct: 673 PNNDGYLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQ 732

Query: 904 RSRSATSVEKSTLKGVDGKLN 924
            +R      +  ++   G  +
Sbjct: 733 NTRDGADDVQEDIQSQPGDDD 753


>gi|300723736|ref|YP_003713043.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630260|emb|CBJ90911.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 763

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 194/802 (24%), Positives = 320/802 (39%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTSDIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  + P+Y  + AR  +  LR++                   LY       ++ 
Sbjct: 64  KAAADLISGDAPDYQYLAARLAIFNLRKKAYGQFEPPA----------LYNHVVRM-VDL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSKEEFEQMDSFINHLRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSNYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            +LFSP +V  L+D +     EFE  Y  YE  ++  +     +I AV L+  M+     
Sbjct: 353 ISLFSPSDVPGLYDAFFADQDEFERLYTQYENDSNIRK----ERIRAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D  +L      AVR LD+++D   + I  A++ +   R +G+G++ F   L    
Sbjct: 469 LGAIEDLTELEELAELAVRALDSLLDYQDYPIIAAQQGSMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS ELA+ERGA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDSSANNLTHKTFEAIQYYLLKASNELAKERGACPWFGETTYSQGLLPIDTYKKTLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +    + W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P    + V
Sbjct: 589 ----TLSSEPLHMDWEALRRDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISV 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V      +L +       ++  +  ++G +                    
Sbjct: 645 KASKDGILRQVVPDY--DLLKGAY---ELLWQMPSNNGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D            +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKDLLLAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755


>gi|289526572|pdb|2X5B|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|289526573|pdb|2X5B|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|289526574|pdb|2X5B|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662315|pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662316|pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
 gi|294662317|pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/776 (24%), Positives = 311/776 (40%), Gaps = 71/776 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT 
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729


>gi|285803174|pdb|2X33|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|285803175|pdb|2X33|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|285803176|pdb|2X33|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662308|pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662309|pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
 gi|294662310|pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/776 (24%), Positives = 311/776 (40%), Gaps = 71/776 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT 
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729


>gi|288562861|pdb|2X3I|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|288562862|pdb|2X3I|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|288562863|pdb|2X3I|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662322|pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662323|pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
 gi|294662324|pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
           Subunit Of E. Coli
          Length = 761

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/776 (24%), Positives = 311/776 (40%), Gaps = 71/776 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     T
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       V  SNLC EI L +          G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L     
Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V                                    + L   +   +E+ 
Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673

Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900
                ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT 
Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729


>gi|238751210|ref|ZP_04612704.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
 gi|238710484|gb|EEQ02708.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
          Length = 761

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/800 (23%), Positives = 316/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           ++ 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGDD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----SDEPLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V        +        ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGIKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|157375443|ref|YP_001474043.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella
           sediminis HAW-EB3]
 gi|157317817|gb|ABV36915.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3]
          Length = 762

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/805 (23%), Positives = 320/805 (39%), Gaps = 69/805 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           LK+    G   + +  ++  ++  A   L +VS   V   ++   +DG+    +   +I 
Sbjct: 5   LKVTKRSGERETIDLDKIHRVITWAAKDLNNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI  E P+Y  ++AR  +  LR++                      E+  + +E G
Sbjct: 65  AAADLISPESPDYQFLSARLAIFHLRKKAFGQFEPPKL-----------YEHVVKLVEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                +       +L  L   + + RD  F Y  ++ L  +Y     +     E  Q  +
Sbjct: 114 KYDAHILHDYSREELDTLDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFAKYPKETRLTYIKNFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G +PF K       + +
Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  +  +R+ +    
Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRQLDYGVQLNKVMYQRLIKGGMI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V  L+D +     EFE  Y  YE+     +     ++ A  L+  ++     T
Sbjct: 354 TLFSPSDVPGLYDAFFEDQDEFERLYHQYEQDDSVRKT----QVKAAELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  SP       +  SNLC EI L +          G I L    A N 
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L      AVR LDN++D   + I  A+KS+   R +G+G++ F + L    +
Sbjct: 470 GAIKDLSELEPLADLAVRALDNLLDYQDYPITAAQKSSMNRRTLGIGVINFANYLAKEGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  I  ++ E I ++ + AS+ LA+E+GA  SF  + + +G+ PID+     + 
Sbjct: 530 RYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPSFHETSYSKGILPIDTYKRHLDQ 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +    + W+ L++ +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 I----CDEPLHMDWETLRQDIVQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           S+  G    V          +  +   ++  +  ++G +                     
Sbjct: 646 SSKDGQLKQVVPDF-----DKYQYSYELLWQMPNNEGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                      QK++DQA S N   D       +   + L      A+ +G+KT YY  +
Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPSRFEGQKVPMQVLLKDLLNAYKLGVKTLYYHNT 734

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930
           R   +   S +  V+ +        
Sbjct: 735 RDGATDSHSDIVSVEKEDEGCEGGA 759


>gi|238794994|ref|ZP_04638590.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
 gi|238725697|gb|EEQ17255.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
          Length = 761

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 191/800 (23%), Positives = 316/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                      ++  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------FDHVSKMVEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEELAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N      W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 ----TISNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|238788615|ref|ZP_04632407.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
 gi|238723210|gb|EEQ14858.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
          Length = 761

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 192/800 (24%), Positives = 317/800 (39%), Gaps = 69/800 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++           A   +M           +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  
Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVSACLFSNYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+ +   +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDSSIRK----QRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D L      AVR LD ++D   + I  A++     R +G+G++ F   L    
Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  +      W+ L+K ++T G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 ----TISDEPLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++ D+  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K+L       +  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733

Query: 905 SRSATSVEKSTLKGVDGKLN 924
           +R      +  ++   G  +
Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753


>gi|254517516|ref|ZP_05129572.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp.
           7_2_43FAA]
 gi|226911265|gb|EEH96466.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp.
           7_2_43FAA]
          Length = 743

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 230/767 (29%), Positives = 369/767 (48%), Gaps = 91/767 (11%)

Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTV 236
            + +L      +   + + ++  ++I  +  L    EP +    AR  + KL  ++    
Sbjct: 24  VERLLEALNHIVRPNMKDEEIRDSIIQVALELTSDMEPRWQNAAARLYVFKLYDKIRKNR 83

Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
                +  + ++         +  E+G+  + + E+    +++ L N++K ERDF F Y 
Sbjct: 84  EINNDENIYGDLYGF----INKLTEKGLYGKYILENYTREEILELENEIKPERDFLFTYS 139

Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMC 353
           G+ +L  RY +   + S +E+PQ  FM +AM LA+ E +  +   A  FY++LSS     
Sbjct: 140 GINLLAKRYLIQDFDRSILELPQQMFMGIAMHLAIPEKKEVRVLWAKRFYDVLSSLKATM 199

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +TPT+ N+     QLSSCF+ TV D L GI+ +L   A ++K+ GG+G     VR L + 
Sbjct: 200 ATPTMSNARKPFYQLSSCFIDTVQDSLKGIYKSLDNFAEVSKFGGGMGIYIGKVRALESP 259

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G  G S GVIP++K+ NDTA+AV+Q G R G+V  +L+ WH D+ EFL L+ N GDDR
Sbjct: 260 IRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDLPEFLQLKTNNGDDR 319

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENYE 526
           ++ HD+      PDLF K    +    W +  P E+       L D YG+E+E  Y    
Sbjct: 320 KKAHDVFPGLCYPDLFWKLAETDIDANWYMMCPHEIRLAKGYSLEDFYGEEWEKKYYECV 379

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 +    R +S   + R ++    ETG P+  ++D  N  +P +H G+++SSNLCT
Sbjct: 380 EDDSISK----RVMSVKEIVRLIIKSAAETGTPFAFYRDTVNKMNPNKHKGMIYSSNLCT 435

Query: 587 EITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQFDYDKLAS 623
           EI  N SS                        +  VCNL S+ L         + ++L  
Sbjct: 436 EIMQNMSSMDIQQSEVKDENGDTIIIEKTKSGDFVVCNLSSVVLGNIDVK---NDEELGY 492

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            + T +R +DNVID+N +++  A+ +N  +RAIGLG  G+   L    I +      E A
Sbjct: 493 VVETQIRAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNLIHWTEDSHKEFA 552

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           D+  E I++HAI AS+ +++E+G YS F+GS W  G              +   +     
Sbjct: 553 DDVYERINYHAIKASMNISKEKGRYSCFEGSDWHNG--------------NYFELRGYKS 598

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W++L++ V T GMRN   MA+AP  + A I G S+ IDP                   
Sbjct: 599 EKWNQLREEVNTHGMRNGYLMAVAPNGSTATIAGTSEGIDPVMAR--------------- 643

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                       W E     +            + ++    + +A+ ID  W ++    R
Sbjct: 644 -----------FWLEEKKGSIIP-----KTAPNLSEENYWYYNSAYNIDQKWCVQINGIR 687

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           Q+ IDQ QS NLY+    + +++  +Y +A   G+K+ YY+RS+S T
Sbjct: 688 QRHIDQGQSFNLYITTNYTMRQIMNLYIEACKAGVKSIYYVRSKSLT 734


>gi|218961217|ref|YP_001740992.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate
           reductase (nrdJ-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729874|emb|CAO80786.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate
           reductase (nrdJ-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 753

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 198/649 (30%), Positives = 304/649 (46%), Gaps = 58/649 (8%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                  L++L  RYF    NG  IE       RVA  +A  + EK      FY L+ + 
Sbjct: 3   MELTENALKVLEKRYFRKDENGVLIEDWDKMLTRVASNIASGDEEKT---RRFYQLMDAG 59

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +F+ ++PTL N+G    QLS+CF+  + D +  IF  ++  A++ K  GG G  ++ +R 
Sbjct: 60  YFLPNSPTLMNAGGDLQQLSACFVLPIEDSMESIFETVKNAALIHKSGGGTGFSFSHLRE 119

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             A +  TNG S G + FLKV N    AV QGG R+GA  A L   H  + +F+  ++N 
Sbjct: 120 ANARVRSTNGVSSGPLSFLKVFNAATDAVKQGGTRRGANMAILNVDHPQILDFITCKENP 179

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            +      + N +  I + FM+ VT +  + L SP                         
Sbjct: 180 AE----LTNFNISVGITEDFMQAVTNDDEYNLISPHT----------------------- 212

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 +++K+ A  ++  ++ M  + G P I F D  N  +P   +G + S+N C E  
Sbjct: 213 ----GAIYKKLKARDVFALIVKMAHKNGEPGIVFLDRLNNANPTPTLGKIESTNPCGEQP 268

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         CNLGSINL     +   D+DKL   +R ++  LD VID++   + + +  
Sbjct: 269 LLPY----EACNLGSINLALLIKDGDVDWDKLKEVVRESIDFLDAVIDVSKFPLHQIETI 324

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +  +R IGLG+MG+   L  L IPYAS EAV +A + MEFI F+A   S ELAQE+GA+ 
Sbjct: 325 SQANRKIGLGVMGWADLLFQLKIPYASEEAVALAAKLMEFIDFYAKERSSELAQEKGAFP 384

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F+ S++  G                         PWD LK+++K  G+RN+    IAPT
Sbjct: 385 NFQESIYATG----------------CLKREKINQPWDSLKEKIKKEGIRNATLTTIAPT 428

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            TI+ I   S  I+P +   YVK+ M G+    VN +L   L+++ +++  ++ ++    
Sbjct: 429 GTISMIADTSSGIEPQFSLAYVKNVMDGEKLIYVNKYLQKALEEKGIYNNKLLDEILTR- 487

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
           GS+  IE IPDDLKK+  TA +I P W I   +  QK+ D A S  +      + + +  
Sbjct: 488 GSLAGIEGIPDDLKKVFQTAHDISPEWHIRMQAAFQKYTDNAVSKTINFPNSATVEDIQS 547

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
            Y  A+ +G K     R  S  S                    P +   
Sbjct: 548 AYELAYHLGCKGVTVYRDGSRESQVLYLGTQTTSPEKTDKKVAPRTRPE 596


>gi|269469190|gb|EEZ80729.1| ribonucleotide reductase, alpha subunit [uncultured SUP05 cluster
           bacterium]
          Length = 758

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 186/791 (23%), Positives = 323/791 (40%), Gaps = 81/791 (10%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +++   +G     + +++  +V  A   L+ VS   V        +DG+   ++   +
Sbjct: 3   ENIQVTKRNGKKEPVDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEEIHETI 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI  E P+Y  ++AR  +  LR++   +    P             E+  ++ +
Sbjct: 63  IKSAADLISTETPDYQYLSARLAIFHLRKKAFKSFTPPPL-----------FEHIKKFTD 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G+  + + +     ++  L   + + RD  F Y  ++ L  +Y     + G   E PQ 
Sbjct: 112 LGIYDKDILDKYSKKEIKELDKYIDHWRDMKFSYAAVKQLEGKYLVQNRVTGEIYESPQL 171

Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ V M L    +   +      FY+ +S F     TP +    T   Q SSC L    
Sbjct: 172 LYVLVGMCLFQEYEAKARMDIVKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIEAD 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DDL  I  A            G+G +   +R +G+ I G      G IPF K  +    +
Sbjct: 232 DDLDSISAAAGAIVKYVSQRAGIGINGGRIRAIGSPIRGGEATHTGCIPFYKHFHTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++V+E L L+ NTG D  R   ++       L  +R  ++ 
Sbjct: 292 CSQGGVRGGAATLFYPFWHLEVKELLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLEDG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             TLFSP +VS L+D +    KEF+  YE YE+     +      I A  L+ K +    
Sbjct: 352 DITLFSPHDVSGLYDSFFEDQKEFKRLYEQYEQDDSIRK----ETIKARELFAKFMQERA 407

Query: 555 ETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS--------EETAVCNLGSI 605
            TG  ++   D CN           V  SNLC EITL +           E A+C L ++
Sbjct: 408 NTGRIYLQNVDHCNTHGAFDAKQAPVRQSNLCMEITLPTKPLYSVQDENGEVALCTLSAV 467

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL A  +      D+L       VR LD+++D   + I+ A+ ++   R +G+G+     
Sbjct: 468 NLGALDS-----LDELEDITEIIVRALDSLLDYQDYPIKAAELASMNRRTLGIGVTNLAY 522

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L   +  Y+      +  ++ E + ++A+ AS +LA E G+   F  + + +G+ P+DS
Sbjct: 523 YLAKNNAKYSDGSGNPLIHKTFEALQYYALKASNKLANELGSCPLFNETQYSKGIMPVDS 582

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +      +     L WD L+K +   G+RNS   A+ P  + + I   +  I+P 
Sbjct: 583 YKKDVDDFCNCDLE----LDWDALRKNIVATGLRNSTLTALMPCESSSQISNSTNGIEPP 638

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
              + +K +  G    +         +       ++ D+K +DG +              
Sbjct: 639 RGFVSIKQSKDGILKQIVPEYEALKNKY-----ELLWDIKNNDGYLQ------------- 680

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLK 898
                          +  QK++DQ+ S N +        ++   K       +A+  G+K
Sbjct: 681 -------------LCAIMQKFVDQSISTNTHYDPSQFEGNKVPMKLFLMDLLKAYKYGIK 727

Query: 899 TTYY--LRSRS 907
           T YY   R   
Sbjct: 728 TLYYHTTRDGG 738


>gi|332141552|ref|YP_004427290.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551574|gb|AEA98292.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 773

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 189/802 (23%), Positives = 314/802 (39%), Gaps = 72/802 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             L +   +G   S + +++  +V  A  GL +VS   V  +     YDG++ S++   L
Sbjct: 3   NNLFVTKRNGEKESIDLEKIHKVVTWAAKGLNNVSVSQVEIKAQIQFYDGINTSEIHETL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI  + P+Y  + AR  +  LR++                      E+  + ++
Sbjct: 63  IKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------FEHVGKMVD 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + L E     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q 
Sbjct: 112 MGKYDKHLLEDYTPEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171

Query: 320 FFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    
Sbjct: 172 LYILVAACLFANYDKATRMDYIRRFYDAASTFKLSLPTPIMAGVRTPTRQFSSCVLIETG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++ 
Sbjct: 292 CSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKDG 351

Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
             +LFSP +V  L+D +    ++FE  Y  YE      +    ++I A+ L+   +    
Sbjct: 352 YISLFSPSDVPGLYDAFFADQEKFEELYVKYE----NDDSIRKKQIKAMELFSLFMQERA 407

Query: 555 ETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            TG  ++   D CN        V  V  SNLC EI L +   +      G I L      
Sbjct: 408 STGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDENGEIALCTLSAF 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                   D+       AVR LDN++D   + +  A  +    R +G+G++ F   L   
Sbjct: 468 NLGAIKSVDEFEELADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYLAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A  +   + E + ++ + AS  LA+E+GA   F  + + QG+ PIDS     
Sbjct: 528 GVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDSYKKDL 587

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +       N      WD L++ +K  G+RNS   A+ P+ T + I   +  I+P    + 
Sbjct: 588 DSV----CNEPLHYDWDALREEIKAHGLRNSTLSALMPSETSSQISNATNGIEPPRGFIS 643

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +KS+  G    V       L+ +      ++ D+  +DG +                   
Sbjct: 644 IKSSKDGVLKQVVPEY-ETLRDQ----YELLWDIPSNDGYLQ------------------ 680

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903
                        QK+IDQ  S N          ++   K L       + +G+KT YY 
Sbjct: 681 --------LVGIMQKFIDQTISANTNYDPSRYEGNKVPMKLLLKDLLTTYKLGVKTLYYH 732

Query: 904 RSR---SATSVEKSTLKGVDGK 922
            +R   S TS   +       +
Sbjct: 733 NTRDGASDTSALDAKANEPMPR 754


>gi|170077964|ref|YP_001734602.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002]
 gi|169885633|gb|ACA99346.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002]
          Length = 780

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 226/798 (28%), Positives = 359/798 (44%), Gaps = 86/798 (10%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
           A  S S++  P  P+  ++   G     +  R+  +V+ AC  L+  ++  + +     +
Sbjct: 29  ATYSASRAVTPTKPQTYVIKRSGKRAPLDVTRIRNVVQWACQDLEA-NTIELEAGLKTRL 87

Query: 190 YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
            DG++  +++  LI  +  +   +EP++  V  R  +  L ++ L               
Sbjct: 88  KDGVTTREIQENLIQCALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VARGYQ 138

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              YP+     +        L       +L      +  + D  ++Y G  +L  RY L 
Sbjct: 139 YGQYPQLVADKVAAKAYDERLL-QYSAAELEIANGWINPDWDMDYDYAGAVLLTKRYLLD 197

Query: 309 INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
                 E+PQ  F+  A+ LAL E    + K A +FY  ++      +TP L N    + 
Sbjct: 198 D-----ELPQEAFLTCALLLALPEKPENRLKWAKKFYEAIAQRQISLATPILANLRIPNG 252

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            LSSCF+  + D+L  IF  +   A ++K  GG+G + + +R  G+ + G    S GVIP
Sbjct: 253 SLSSCFIIGMEDNLESIFREITNAARISKNGGGVGCNVSRIRATGSRVMGKANASGGVIP 312

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++K+ NDTA+AVNQGG+R GA+   L+ WH+DV EFL+++   GD RR+ +D+     + 
Sbjct: 313 WIKLLNDTAIAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENGDQRRKAYDVFPQLVVT 372

Query: 487 DLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           D FM+RV     WTL  P EV      DL  L+G++F+ AY   E   D+ +IK+++K+ 
Sbjct: 373 DEFMRRVQHKEAWTLVDPYEVKENLGIDLAALWGEKFDAAYRQIEASLDQ-DIKLYKKVD 431

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-TAVC 600
           A  L+++++    ETG P+I FKD  N  +P QH G +   NLC E   N    +    C
Sbjct: 432 ARHLFKEIMRSQIETGMPYIAFKDTINRANPNQHEGYIPGVNLCVESFSNVVPGQLAHTC 491

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NL         + D+LA     AVR+LDN I+I     E +   N  +R IG+G 
Sbjct: 492 NLDSLNLANI------EADELADACEVAVRILDNTIEITNTPFEDSSIHNQRYRTIGVGA 545

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    L    + Y + EA++      E I ++    SV LAQERGAY  F GS W +G 
Sbjct: 546 MGLADWLAKNKLSYKNIEAID---RLFEDIGYYCTRTSVNLAQERGAYPGFPGSEWSKGH 602

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                  + A+       N  +   W+ L + V+  G+RNS+  AIAP  + + + G S 
Sbjct: 603 L------IGAKPITWYRENAHAVDRWERLSEDVRKYGIRNSHITAIAPNTSSSLVQGCSA 656

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P+Y   +      G   +   F+                                  
Sbjct: 657 SILPTYSKFFYDKWAKGTVPIAPPFIGKSF------------------------------ 686

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDF 887
               +     +D   ++++ +  QKWID   S+    NL                K +  
Sbjct: 687 --WFYQENKSMDQRLVVKAVATMQKWIDTGISMELIFNLNQGIYFPNEPERALKAKDIFE 744

Query: 888 IYRQAWLMGLKTTYYLRS 905
           I   AW  G K  YY+R+
Sbjct: 745 ILMLAWAEGCKAIYYIRT 762


>gi|225568011|ref|ZP_03777036.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM
           15053]
 gi|225163185|gb|EEG75804.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM
           15053]
          Length = 741

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 235/789 (29%), Positives = 368/789 (46%), Gaps = 96/789 (12%)

Query: 155 ISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212
                K L  ++       ++       +  +       GL++ +  + L  ++  L  +
Sbjct: 2   EDIKIKGLNQVLAHIQGDFKEPEYDLAQLYQKYASLQKPGLTDKEQLSLLTKAAVELTTQ 61

Query: 213 E-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           E P +  + AR L    R  +   +  +  ++ + ++  L         +E +    + E
Sbjct: 62  EAPGWEMIAARLLYAGFRDSLEDAMKSRGIRSFYEKIVYL--------TKENLYGSYILE 113

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330
                ++   A  ++ +R   F Y GL +L +RY +    G  +E PQ  FM ++M LA+
Sbjct: 114 HYSRQEIEAFAKLIEEDRSRLFTYSGLDLLLNRYVIRTRKGVILETPQEMFMGISMHLAM 173

Query: 331 KET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           KE   + +    FY +LS      +TPTL N+   + QLSSCF+ TVPD L GI+ ++  
Sbjct: 174 KEKENRSEWVKRFYGMLSLLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDS 233

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A ++KY GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q G R+GAV 
Sbjct: 234 FAKVSKYGGGMGMYFGKVRAGGSAIRGFEGAAGGVIRWIKLANDTAVAVDQLGVRQGAVA 293

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV 507
            YL+ WH D+ EFL LR N GDDR + HD+  A   PD F K    +    W L  P EV
Sbjct: 294 VYLDVWHRDLPEFLKLRTNNGDDRMKAHDVFPAVCYPDYFWKMARDHIEGDWYLMCPHEV 353

Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                  L D YGKE+E  Y +        E    R +    + R ++    ETG P++ 
Sbjct: 354 LTVKGYALEDCYGKEWEEKYLDCVAD----ERISKRVLPIKEIIRLIIRSAVETGTPFVF 409

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAV 599
            +D  N  +P  H G+++ SNLCTEI  N                           E  V
Sbjct: 410 NRDEVNRMNPNGHKGIIYCSNLCTEIAQNMGAVEEVRQSIETVDGETVVVTVTKPGEFVV 469

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNL S++L     +   D  ++  T+ +A+R LDNVID+N   +  AK +N  +R +GLG
Sbjct: 470 CNLASVSLGHIDVS---DEKEIYRTVSSAMRALDNVIDLNFFPVPYAKLNNEKYRPVGLG 526

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           + G+   L    I + S E +  AD+  + +   AI+AS ++A+E+G Y+ F+GS W  G
Sbjct: 527 VSGYHHMLAKHGIQWESEEHLAFADKVFDTLHRAAIAASCDIAEEKGVYACFEGSDWQTG 586

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                               + +   W++L+ R  + G+RN   +A APT++ + I G +
Sbjct: 587 --------------AYFDKRKLTGAAWEQLRARAASCGVRNGYMLAAAPTSSTSIIAGTT 632

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             +DP     Y++   +G    V      EL     W                       
Sbjct: 633 AGLDPVMHRFYLEEKKNGLVPRVAP----ELSMDTFW----------------------- 665

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
                +  A  ID  W + +   RQ+ IDQAQS+NLY+ +E + + +  +Y  AW  G+K
Sbjct: 666 ----YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYITNEYTFRNVLDLYLLAWECGVK 721

Query: 899 TTYYLRSRS 907
           T YY+RSRS
Sbjct: 722 TVYYIRSRS 730


>gi|94499219|ref|ZP_01305757.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter
           sp. RED65]
 gi|94428851|gb|EAT13823.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter
           sp. RED65]
          Length = 756

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 189/789 (23%), Positives = 316/789 (40%), Gaps = 70/789 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  ++  A  GL++VS   V         DG+S SD+   LI
Sbjct: 4   TLHVTKRDGNRAPLDLDKIHKVLTWAAEGLENVSVSEVELRAQIQFSDGISTSDIHETLI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +  P+Y  + AR  +  LR++                      E+  + ++ 
Sbjct: 64  KSAADLISENTPDYQYMAARLNIFHLRKKAYGQFEPPAL-----------YEHVAKLVDM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               R L E     +   +   +++ RD  F Y  ++ L  +Y     + G   E PQ  
Sbjct: 113 DRYDRHLLEDYTKEEFDEMEGFIEHGRDLNFAYAAVKQLEGKYLAQNRVTGEVFESPQFL 172

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +   L        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YVLIGACLFANYEKSNRMDYVRRFYDAVSTFKLSLPTPIMAGVRTPTRQFSSCVLIETDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I  A            G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINAAAGSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   ++    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYERLIKGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     +FE  Y  YE+     +    + I A+ L+  +L     
Sbjct: 353 ITLFSPSDVPGLYDAFFEDQAKFEELYVKYEQDDSIRK----QTIKAMELFSILLQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       +  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFNPEHAPIRQSNLCLEIALPTKPLKDINDKDGEIALCTLAAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L       VR LDN++    + +  A+ ++ + R +G+G++ +   L    
Sbjct: 469 LGALENLDELEELSDIIVRALDNLLSYQDYPMAAAEIASESRRTLGVGVINYAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS +LA+E GA + F  + + QG+ PID+     +
Sbjct: 529 VKYSDGSANGLTHQTFEAIQYYLLKASNQLAKEVGACAKFNETTYSQGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
              E  +    R  W+ L+  +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 KVCEEEL----RYDWEALRGEIKTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ +   +DG +                    
Sbjct: 645 KASKDGILKQVVPEYQKL-----KNNYELLWNWPSNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQA S N   D       +   K L       + +GLKT YY  
Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGGKVPMKLLMKDLLTTYKLGLKTLYYHN 733

Query: 905 SR-SATSVE 912
           +R  A+  +
Sbjct: 734 TRDGASDAQ 742


>gi|225164891|ref|ZP_03727110.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800505|gb|EEG18882.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 608

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 246/572 (43%), Positives = 338/572 (59%), Gaps = 42/572 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+RN  V  F P KI  A+ KAF++++              + +T+    R+  H   
Sbjct: 51  RVIRRNHQVVPFLPQKIEVAVRKAFLSLDRDSTPA--------EAVTQAVSERI--HASR 100

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA---------- 139
               H+E+IQD V+  LM++GH+K+   Y++YR  R + RA      + +          
Sbjct: 101 QAFAHVEEIQDIVQEELMKAGHYKVAEAYIIYRALRHNGRATSIQPDAASAGSEIPDLKP 160

Query: 140 -----PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGL 193
                     + +   DGT + ++   L + +E A  GL   ++   + +   +++YD +
Sbjct: 161 QIRSGDADTMIVVTQPDGTTLLWDRTDLRLRIEFARIGLDLCLTPAEIETALTRSLYDQI 220

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           +  DL+  +I +S+TLIE++ ++AK   R  L  +  EVL     +       +++  + 
Sbjct: 221 TRRDLDQTIILNSKTLIERDADFAKFAGRIQLTYIYEEVLHWDIVRDG---IGKLKTAHQ 277

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311
             F +++  G     L+  ++D+DL  LA  L    D   ++LG+Q LYDRY +      
Sbjct: 278 AAFKKHLAHGAAIHRLNPRLLDYDLDKLAAALDPSADLELDFLGIQTLYDRYLVTDKTTN 337

Query: 312 ----SRIEMPQAFFMRVAMGLALKET-----EKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
                R+E PQ F+MRVAMGL L +      ++E+R    Y L  S  F  STPTLFNSG
Sbjct: 338 PAAPRRLETPQLFWMRVAMGLFLDDGDPATGQREQRITALYELYKSRRFCSSTPTLFNSG 397

Query: 363 TRHPQLSSCFLTTVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T H QLSSC+L T+ D L  I    + ENA L+K++GGLG  WT VRG GAHI GTNG+S
Sbjct: 398 TLHSQLSSCYLYTIDDSLESIMTRGIAENAQLSKWAGGLGGSWTAVRGTGAHIAGTNGES 457

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           QGVIPFLK+ ND   AVNQGGKRKG+ CAYLETWH D+ EFL+LRKNTGDDRRRTHDMNT
Sbjct: 458 QGVIPFLKLHNDQLNAVNQGGKRKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNT 517

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           ANWIPDLFMKR+     WTLF   +V DLH+LYG++FE AY  YE  A  G+I   R I+
Sbjct: 518 ANWIPDLFMKRMEAREHWTLFHSSDVPDLHELYGRKFEDAYLRYETLAAEGKIHGHR-IA 576

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           A+ LW+KML+MLFETGH W+TFKD CNIRSPQ
Sbjct: 577 ALDLWKKMLSMLFETGHTWLTFKDACNIRSPQ 608


>gi|285016982|ref|YP_003374693.1| ribonucleoside-diphosphate reductase alpha subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472200|emb|CBA14707.1| probable ribonucleoside-diphosphate reductase alpha subunit protein
           [Xanthomonas albilineans]
          Length = 803

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 240/797 (30%), Positives = 371/797 (46%), Gaps = 87/797 (10%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           I+ D G   ++F+  RL+  ++   +    +       + +  +   + LS  ++   LI
Sbjct: 45  IVKDGGNRRMAFDRSRLQRTLDRIHAEFPQLDVSDYERKAFAFIEKKESLSADEMVDYLI 104

Query: 204 FSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             + + ++   P +    AR  L++L +      +         E    Y        + 
Sbjct: 105 REAESRVDIATPEWEYFAARLYLDRLYKRASKNRFYDAG-----EKYGSYVGLQESLADR 159

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
           GV +  + ++    +L      +  ERD  F Y GL +L  RY    N     E+PQ  +
Sbjct: 160 GVYSINILKNYSKEELAEAGRMIDPERDKLFAYNGLYLLATRYLATDNSRKVYELPQERW 219

Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           + +A+ L   E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 220 LTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLSNAGKIGGQLSSCFIDTVDD 279

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K  N+TAV+V
Sbjct: 280 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVKNSSGGVVPWIKQLNNTAVSV 339

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ TA  +PD+FM+ V +   
Sbjct: 340 DQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTAVCVPDIFMEAVERRGE 399

Query: 499 WTLFSPDEVSDLHDLYGKEF--EIAYE----NYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV ++   Y ++F  E   E        +    E    + + A+ ++++++  
Sbjct: 400 WYLFDPYEVKEVKGWYLQDFFDEKRGEGSFRAKYEEVVADERIGRKVVKAIDMFKRIMVS 459

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 460 QLETGNPFMFYRDEVNRMNPNKHQGMVYSSNLCTEILQNMSPTRVIQEMISGDQIVTTKQ 519

Query: 596 --ETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             +  VCNL S+NL             D L   IR  VR+LDNVID+N   + +A  +N 
Sbjct: 520 AGDFVVCNLSSVNLGRAVTAQPDLLSPDILERLIRVQVRMLDNVIDLNDLPVPQATITNQ 579

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +RAIGLG  G+   L    I + S +A + +D   E I++  I AS+ LAQE+GAY  F
Sbjct: 580 KYRAIGLGTFGWHHLLAQKGIEWNSRQAEDYSDTLYERINYLTIQASLALAQEKGAYKVF 639

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KGS W  G              +  +        W EL  +V   G+RN+  +A+AP  +
Sbjct: 640 KGSDWQNG--------------EYFSKRGYDSAQWQELAAQVSVHGVRNAWMVAVAPNMS 685

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            A I G + SIDP Y   Y +        VV                             
Sbjct: 686 TAQIAGSTASIDPIYSAFYYEEKKDFRRPVVAP--------------------------- 718

Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                +  D    +   A+++D    +   +RRQ+ +DQ+ S N Y+        L  ++
Sbjct: 719 ----GLTVDTYPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSGIRAGTLLDLH 774

Query: 890 RQAWLMGLKTTYYLRSR 906
             AW  GLKTTYY+RS 
Sbjct: 775 MTAWKEGLKTTYYVRSN 791


>gi|218249009|ref|YP_002374380.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp.
           PCC 8801]
 gi|218169487|gb|ACK68224.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 8801]
          Length = 769

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 219/787 (27%), Positives = 363/787 (46%), Gaps = 86/787 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
             PK++++  D +    N  ++  +V  AC G  +V+   + +     +  G++  +++ 
Sbjct: 29  ATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLTTRLRHGITTREIQD 87

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI  +  +    EPN+  V  R  +  L ++ L          +       Y +     
Sbjct: 88  NLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTL---------VSRGYQYGNYEKTVHTK 138

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E       L       +L    + +  + D  ++Y G  +L  RY L       E+PQ 
Sbjct: 139 VEAQEYDSRLLT-YSSEELREAGSWINPDWDTDYDYAGAVLLTSRYLL-----PNELPQE 192

Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +  ++ LA  E    +   A +FY  +++     +TP L N       L+SCF+ ++ 
Sbjct: 193 ALLSCSLLLATVESPENRLLWARQFYEAIATRKISLATPILANLRVPGGSLTSCFIVSID 252

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  IF  +   A ++K  GG+G + + +R  G+ +      S G+IP++K+ NDTA+A
Sbjct: 253 DSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANASGGIIPWIKLLNDTAIA 312

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     +PD FM+RV   +
Sbjct: 313 VNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQVILPDEFMRRVINKS 372

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P EV      +L +L+G++FE AY   ER+  + +I ++++I A  L++ ++  
Sbjct: 373 EWTLVDPYEVRTKLGIELAELWGEKFEEAYGLIERELGQ-KITLYKRIQARDLFKTIMRS 431

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHF 611
             ETG P++ FKD  N  +P +H G +   NLCTE   N S  +E   CNL S+NL    
Sbjct: 432 QVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPGKEAHSCNLVSLNLANL- 490

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +  +L S  R AVR+LDN IDI  +  E AK  N+ +R IG+G MG    L    
Sbjct: 491 -----EASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYRTIGIGCMGLADWLAKNR 545

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S   +   ++  E   +    AS+ELA+ER  Y +F+GS W QG        + A+
Sbjct: 546 LSYDS---LGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGSEWSQGKL------IGAK 596

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D    N T +  W +L + +K  G+RNS+  AIAP  + + + G + SI P Y   + 
Sbjct: 597 SVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFY 656

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G   +   F          W                     P++      T   +
Sbjct: 657 DKWAKGTVPIAPPF-----IDESFW-------------------FYPEN-----KT---L 684

Query: 852 DPMWLIESASRRQKWIDQAQSL----NLY----LDE-----PSGKKLDFIYRQAWLMGLK 898
           D   ++++ +  Q+W+D   S+    NL       +      + K +      AW  G K
Sbjct: 685 DQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSITAKDIFDTLVLAWQSGCK 744

Query: 899 TTYYLRS 905
             YY+R+
Sbjct: 745 AVYYVRT 751


>gi|118602533|ref|YP_903748.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567472|gb|ABL02277.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 757

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 184/794 (23%), Positives = 322/794 (40%), Gaps = 75/794 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K++  +G   S + +++  +V  A   L+ VS   V        +DG+   D+   +I
Sbjct: 4   DIKVIKRNGQQESIDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E P+Y  + AR  +  LR++   +    P             E+  ++ + 
Sbjct: 64  KSAADLISIEVPDYQYLAARLTIFHLRKKAFKSFTPTPL-----------FEHIKKFTDL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
            +  + +       ++  L   + + RD  F Y  ++ L  +Y     + G   E PQ  
Sbjct: 113 SIYDKEILNKYSKEEIETLGAYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQLL 172

Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ + M L  +     +      FY+ +S F     TP +    T   Q SSC L  V D
Sbjct: 173 YVLIGMYLFQEYEASIRMDIVKRFYDAVSLFKISLPTPIMAGVRTPIRQFSSCVLIEVDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  I               G+G +   +R +G+ I G      G IPF K  +    + 
Sbjct: 233 DLDSISAGAGAIVKYVSQRAGIGINGGKIRAIGSPIRGGEAIHTGCIPFYKHFHTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ NTG D  R   ++       L  +R  ++  
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLKDDD 352

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            TLFSP +V  L+D +    E     YE+      I+  + I A  L+ K +     TG 
Sbjct: 353 ITLFSPHDVPGLYDAFFANQEEFKRLYEQYEQNDSIRK-QAIKARELFAKFMQERANTGR 411

Query: 559 PWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS--------EETAVCNLGSINLLA 609
            ++   D CN  S        +  SNLC EITL +           E A+C L ++NL A
Sbjct: 412 IYLQNVDHCNTHSAFDAKQAPIKQSNLCMEITLPTKPLYSVQDEQGEVALCTLSAVNLGA 471

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             +      +++ +     VR LD ++D   + I+ A+ S+ + R +G+G+      L  
Sbjct: 472 LDS-----LNEMEALTDIIVRSLDCLLDYQDYPIKAAELSSKSRRTLGIGVTNLAYYLAK 526

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y+     ++  ++ E + ++++ AS  LA+E G    F  + + QG+ PIDS    
Sbjct: 527 NGVKYSDGSGNQLIHKTFEALQYYSLKASNTLAKELGVCPLFSQTQYSQGIMPIDSYKKD 586

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +   +  +     L WD L++ +K+ G+RNS   A+ P  + + I   +  I+P    +
Sbjct: 587 IDAFCDCKLE----LDWDTLRQNIKSTGLRNSTLTALMPCESSSQISNSTNGIEPPRGFV 642

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +K +  G    +                 ++ D+K ++G +                  
Sbjct: 643 SIKQSKDGILKQIVPEYERL-----KNQYELLWDIKDNEGYLQ----------------- 680

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902
                         QK++DQ+ S N++        +    K       +A+  G+KT YY
Sbjct: 681 ---------LCGIMQKFVDQSISTNMHYDPSQFEGNRVPMKLFLMDLFRAYKYGIKTLYY 731

Query: 903 --LRSRSATSVEKS 914
              R       EK 
Sbjct: 732 HTTRDGGDDWQEKE 745


>gi|319655056|ref|ZP_08009125.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
 gi|317393251|gb|EFV74020.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
          Length = 740

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 240/751 (31%), Positives = 361/751 (48%), Gaps = 84/751 (11%)

Query: 190 YDGLS---ESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
           Y+ +S      +    I    + I   EP++    +R LL+KL  E       K ++   
Sbjct: 30  YEEMSQLGAEAMYDQFILDCLSFISIDEPDWTFAASRLLLKKLYTE-----SGKNRECQP 84

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            +    +     R    G+  + L +     ++  LA  +K E D  F YLGL++L DRY
Sbjct: 85  DDCYKHFYTLIERLTALGIYDQDLLDVYSKDEINELAQFIKKENDRLFTYLGLKMLADRY 144

Query: 306 FLHIN-GSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
                  +  E+PQ  FM ++M L  +E +  + +   E Y  +S  +   +TPTL N+G
Sbjct: 145 LARDKQKNLYELPQERFMIISMVLMKREPKGKRLELIKEAYWAMSGLYMTVATPTLANAG 204

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               QLSSCF+ TV D L  I+ +  + A L+K  GG+G     +R  G+ I G  G S 
Sbjct: 205 KNWGQLSSCFIETVDDSLDSIYDSNTDIASLSKNGGGIGVYLGKIRSRGSDIKGFKGASS 264

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GVIP++K  N+TAV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ T 
Sbjct: 265 GVIPWMKQLNNTAVSVDQLGQRQGAISVYLDVWHKDIFSFLDAKLNNGDERQRTHDLFTG 324

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKV 536
             IPDLFM++V     W LF P EV  +     ++F      E ++    ++        
Sbjct: 325 VCIPDLFMEKVESRGYWYLFDPHEVRKVMGFSLEDFYDEGEGEGSFRQKYKECIDNPNLS 384

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--- 593
             K+ A+ + + ++    ETG P++ ++D  N ++   H G+++ +NLCTEI  N S   
Sbjct: 385 REKVPAIDIMKSIMRSQLETGTPFMFYRDEVNRKNANSHCGMIYCTNLCTEIVQNQSVTK 444

Query: 594 ----------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                             +  VCNL SINL    +        L   +   VR+LDNVID
Sbjct: 445 RVEEYTRDGRIIIEKHPGDFVVCNLSSINLARAISEGV-----LERLVPIQVRMLDNVID 499

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           IN   + + + +N  +RAIGLG  G+   L L  I + S EA + AD   E I+F AI +
Sbjct: 500 INSIPVPQGQITNQKYRAIGLGTFGWHHLLALKKITWESEEAEKFADILYEQIAFLAIKS 559

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S++LA+E+G+YS+FKGS W+ G +         E R  L     S + W  L K V   G
Sbjct: 560 SMDLAKEKGSYSAFKGSDWETGAYF--------EKRGYLEAE--SDMDWAALSKEVSENG 609

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN+  +A+AP A+ A I G + SIDP +   Y +        V            D+  
Sbjct: 610 VRNAYLLAVAPNASTALIAGSTPSIDPIFNKQYSEEKKDYRIPVTAP---------DINS 660

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E +                        + +A+ I+  W I   + RQK IDQA S N Y+
Sbjct: 661 ETIW----------------------YYKSAYHINQEWSIRQNANRQKHIDQAISFNFYI 698

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
                   L  ++  AW   LKTTYY+RS S
Sbjct: 699 PNHIKAIDLLNLHLSAWKKKLKTTYYIRSTS 729


>gi|238897539|ref|YP_002923218.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465296|gb|ACQ67070.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 762

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 182/806 (22%), Positives = 311/806 (38%), Gaps = 69/806 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG   S +  ++  ++  A  GL  VS   V   +    YDG+   D+   +I
Sbjct: 4   SLLVTKRDGRKESIDLDKIHRVINWAAEGLNHVSVSQVELRSQIQFYDGIKTEDIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  E P+Y  + AR  +  LR++        P             E+  + ++ 
Sbjct: 64  KAAADLISCEAPDYQYLAARLAIFHLRKKAYGRFEPPPL-----------FEHVSKMVKM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   +   + + RD  F Y  ++ L  +Y     +N    E  Q  
Sbjct: 113 GKYDPHLLEDYSEDEFAQMDECIDHWRDMTFSYAAVKQLEGKYLVQNRVNHQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L      + +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSRYPASTRLDYIKRFYHAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R  G+ I        G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRAQGSPIRSGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGEE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+  +     EF+  Y  YE   D       +KI AV L+  ++     
Sbjct: 353 ITLFSPSDVPGLYAAFFSDQSEFQRLYVQYEADPDIR----HKKIKAVELFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  ++   D CN  SP       V  SNLC EI L ++         G I L       
Sbjct: 409 TGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTAPLNNINDEKGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      + R LD ++D   + I  A++S  + R +G+G++ F   L    
Sbjct: 469 LGAINSLDELQELATLSARALDALLDYQHYPIPAAQRSAVSRRTLGIGVINFAYYLARNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS +LA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLRASNDLAREQGACPWFDQTRYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W  L++ +   G+R+S   ++ P+ T + I   +  I+P    + +
Sbjct: 589 DI----HQEPLHYDWASLRQDILKFGLRHSTLSSLMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V     +  +        ++ ++  +DG +                    
Sbjct: 645 KASKDGILRQVVPEYESLKEAY-----ELLWNIPDNDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK++DQ+ S N   D       +   K+L      A+  G+KT YY  
Sbjct: 681 -------LVGLMQKFVDQSISANTNYDPRRFSNGKVPMKQLLTDLLNAYKWGIKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930
           +R      ++ +K      +      
Sbjct: 734 TRDGADDVQADVKENLSMDDECSSGG 759


>gi|266623613|ref|ZP_06116548.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864590|gb|EFC96888.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium
           hathewayi DSM 13479]
          Length = 640

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 219/678 (32%), Positives = 325/678 (47%), Gaps = 85/678 (12%)

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
            +    + E     ++      L   RD  F Y GL++L  RY +       +E PQ  F
Sbjct: 4   QLYGDYILEHYTKEEIETCEGFLDGTRDQLFTYSGLELLLSRYVIRSRENVPLESPQEMF 63

Query: 322 MRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + +A+ LA+ E   + +    FY++LS+     +TPTL N+   + QLSSCF+ TVPD L
Sbjct: 64  LGIALHLAMLEKNDRLEWVRRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPDSL 123

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++K+ANDTAVAV+Q
Sbjct: 124 DGIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVIRWIKLANDTAVAVDQ 183

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498
            G R+GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   P+LF K   +  +A 
Sbjct: 184 LGVRQGAVAVYLDAWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPNLFWKLAKEDIDAD 243

Query: 499 WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           W L  P E+       L D YG+E+E  Y          +    R I    L R +L   
Sbjct: 244 WYLMCPHEILTVKGYSLEDSYGREWEERYWECVADHRIHK----RVIPVKELVRLILKSA 299

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------- 596
            ETG P+   +D  N  +P  H G+++ SNLCTEI  N S  E                 
Sbjct: 300 VETGTPFTFNRDLVNEANPNSHKGIIYCSNLCTEIAQNMSPVEQVEQRIETVDGETVVVT 359

Query: 597 ------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                   VCNL S++L         + +++    + AVR LDNVID+N   +  A+ +N
Sbjct: 360 VTKPGDFVVCNLASLSLGKIDVT---NREEVTRLTQYAVRALDNVIDLNFFPVPYARINN 416

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R IGLG+ G+   L    I + S E +   D   E+I++ AI AS + A+E+G Y  
Sbjct: 417 MKYRPIGLGVSGYHHMLAKNGISWESEEHLAFTDRVFEWINYAAIEASCDNAREKGCYEL 476

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F+GS W  G                    +     W  LK++    GMRN   +AIAPT+
Sbjct: 477 FEGSDWQTG--------------AYFEKRKYHSEEWLRLKEKTAANGMRNGWLIAIAPTS 522

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + + + G +  +DP     Y++   +G    V      +L     W              
Sbjct: 523 STSMLAGTTAGLDPIMNRYYLEEKKNGLVPRVAP----DLSPETFWQ------------- 565

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                         +  A  ID  W + +   RQ+ +DQAQS+NLY+ +E + +++  +Y
Sbjct: 566 --------------YKNAHYIDQQWSVRAGGIRQRHVDQAQSMNLYITNEYTLRQVLNLY 611

Query: 890 RQAWLMGLKTTYYLRSRS 907
             AW  G+KT YY+RSRS
Sbjct: 612 ILAWECGVKTIYYIRSRS 629


>gi|190574753|ref|YP_001972598.1| ribonucleotide-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia K279a]
 gi|190012675|emb|CAQ46303.1| putative ribonucleoside-diphosphate reductase 2 alpha chain
           [Stenotrophomonas maltophilia K279a]
          Length = 828

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 244/800 (30%), Positives = 371/800 (46%), Gaps = 93/800 (11%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALI 203
           I  + G   + F ++RL+  ++   +    +       + +        +S  DL   LI
Sbjct: 70  ITKEAGNRRLPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLI 129

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             + + ++   P + +  AR  L +L +           +   +++   Y  Y       
Sbjct: 130 REAESRVDLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVGLKYGSYVGLQESL 181

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
            + G+ +  +       +L      +  ERD  F Y GL +L  RY          E+PQ
Sbjct: 182 ADRGIYSNDILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQ 241

Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             ++ +A+ L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 242 ERWLTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 301

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TA
Sbjct: 302 VDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTA 361

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGAV  YL+ WH D+E F+DLR N GD R R HD+ T+  +PDLFM+ V +
Sbjct: 362 VSVDQLGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVER 421

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKM 549
            A W LF P EV      Y ++F  E      +     +    E    R + A+ L++++
Sbjct: 422 RADWYLFDPHEVKQAKGWYLQDFYDEKRGAGSFRLRYAELVADERISRRTVKAIDLFKRI 481

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------- 595
           +    ETG+P++ ++D  N R+P +H G+++SSNLCTEI  N S                
Sbjct: 482 MLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIVT 541

Query: 596 -----ETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                +  VCNL SINL    +        D L   I   VR+LDNVID+N   + +A  
Sbjct: 542 TRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATI 601

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L    I + SP+A E+AD   E I+F  I AS +LA+E+G+Y
Sbjct: 602 TNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEELADRLYERINFLTIQASAQLAKEKGSY 661

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F GS W  G +  D                 S   WD L + V T G+RN   +A+AP
Sbjct: 662 PMFAGSDWHNGRYFRD--------------RDYSGAAWDSLAREVATHGLRNGWLLAVAP 707

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + A I G + SIDP Y   Y +        V                           
Sbjct: 708 NMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP------------------------ 743

Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                   +  +    +   A+++D    +   +RRQ+ +DQ+ S NLY+        L 
Sbjct: 744 -------GLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLL 796

Query: 887 FIYRQAWLMGLKTTYYLRSR 906
            ++  AW  GLKTTYY+RS 
Sbjct: 797 ELHLSAWREGLKTTYYVRSN 816


>gi|319760601|ref|YP_004124539.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039315|gb|ADV33865.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 763

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 185/782 (23%), Positives = 319/782 (40%), Gaps = 69/782 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N +++  ++  A  GL+ +S   V   ++   Y+G+  SD++  +I
Sbjct: 4   TLLVTKRDGHHEPINLEKIHRVINWAAQGLEKISVSQVELRSHIQFYNGIKTSDIQETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI KE P+Y  + AR  +  LR++                   LY     R ++ 
Sbjct: 64  KAAADLISKEEPDYQYLAARLSVFHLRKKAYGQFEPP----------KLYDHVL-RLVKI 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L       +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLNDYTHNEFEQMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++  A  L     +  +     +FYN +S+F    +TP +    T   Q SSC L    D
Sbjct: 173 YILTAACLFAKYPKNTRMDYIKKFYNAISTFKISLATPIMSGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R +G+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVAQRAGIGINAGRIRAIGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH+++E  L L+ N G +  R   ++    I  L  +R+     
Sbjct: 293 SQGGVRGGAATLFYPIWHLEIENLLVLKNNRGVESNRIRHLDYGVQINKLMYQRLITGKH 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V DL++ +      F+  Y  YE      ++K    I A+ L+  M+     
Sbjct: 353 ITLFSPADVPDLYESFFSDQNLFDYLYHKYENDHKIRQLK----IKAIELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN        +  +  SNLC EITL +          G I L       
Sbjct: 409 TGRIYIQHTDHCNTHSPFNSALAPIRQSNLCLEITLPTKPLNNINDTNGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             N  + D L+      VR LD ++D   + +  A+ S    R++G+G++ +   L    
Sbjct: 469 LGNLNNLDDLSELSTLIVRALDALLDYQSYPVLAAQYSAKNRRSLGIGVINYAYYLAKHG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I ++ + AS  LA+E+GA + F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANTLTHHTFEAIQYYLLKASNLLAKEKGACAWFDDTSYAQGILPIDTY---KK 585

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D + ++   R  W+EL+ ++K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 586 DLDYI-ISEPLRYNWEELRNQIKQYGLRNSTVSALMPSETSSQISNSTNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V              +  ++ ++  + G                      
Sbjct: 645 KASKDGILRQVVPNCEKLAS-----NYELLWNIPNNQG---------------------- 677

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                +E     QK+IDQ+ S N+          +   K+L      A+ +G+KT YY  
Sbjct: 678 ----YLELVGIMQKFIDQSISTNMNYDPSCFPESKVPIKQLLSDLLYAYKLGIKTLYYHN 733

Query: 905 SR 906
           +R
Sbjct: 734 TR 735


>gi|172058303|ref|YP_001814763.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium
           sibiricum 255-15]
 gi|171990824|gb|ACB61746.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Exiguobacterium sibiricum 255-15]
          Length = 755

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 237/783 (30%), Positives = 364/783 (46%), Gaps = 93/783 (11%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS--ESDLETALIFSSRTLIE-KEPN 215
            + +  ++ +  +   ++  +       + + +G +     +   L   +  +++ +EPN
Sbjct: 17  IEDVYTVIRQITAAYSELDVERYTERAIRAL-EGKTLQADQVYELLTMHALDMLKAEEPN 75

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +  V     L +L  E         +     E          +  E G+    L E+   
Sbjct: 76  WTFVATATYLNRLYLEASENRGYAAE-----ERYGSLYHLIEKLTEIGIFTPHLLETYTK 130

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE-- 332
            ++  LA  +   RD  F Y+GL+ L DRY    +     E+PQ  FM +AM L   E  
Sbjct: 131 EEVEELAASIDPSRDHLFTYIGLRTLSDRYLARDHVKKLYELPQERFMIIAMTLMQTEPK 190

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             + +   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L GI+ +  + A 
Sbjct: 191 ERRIELVKESYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLRGIYDSNTDVAT 250

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+G     +R  G+ I G  G S GVIP++K  N+TAV+V+Q G R+G++  YL
Sbjct: 251 LSKGGGGIGVYMGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVSVDQLGMRQGSIAVYL 310

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD--- 509
           + WH D+ EFLD + N GD+R RTHD+ T   +PD FM+ V     W LF P E+     
Sbjct: 311 DIWHKDILEFLDAKLNNGDERLRTHDLFTGVSLPDHFMRTVEARGDWYLFDPHEIRTVMG 370

Query: 510 -------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                       G  F   Y     +      K    + A+ L ++ +    ETG P++ 
Sbjct: 371 FSLEDSFDETEQGGSFTEKYTACVNEPRLSRTK----VPAIDLVKRYMRSQLETGTPYMF 426

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCNLG 603
           F+D  N  +P +H G+++SSNLC+EI  N S                     +  VCNL 
Sbjct: 427 FRDAVNRANPNKHAGMIYSSNLCSEIMQNMSPTTVTEEYTEDGKIIITKTPGDFVVCNLS 486

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SI L      N      L   I   +R+LDNVID+N   + +A+ +N  +RA+GLG  G+
Sbjct: 487 SIALARAVRENV-----LERLIPIQMRMLDNVIDLNTIDVPQAQITNQKYRAVGLGTFGW 541

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L L  I + S EAV+ AD   E I++  I AS++LA+E+GAY  F+GS W  G +  
Sbjct: 542 HHLLALEGIRWESVEAVQYADRLYEKIAYLTIDASMQLAKEKGAYRLFEGSEWQTGEYIA 601

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                               L WD L+  +   GMRN+  MA+AP ++ A I G + SID
Sbjct: 602 RRHYKTTPE-----------LNWDRLQADITAHGMRNAYLMAVAPNSSTAIIAGSTASID 650

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P Y+ +Y +   +    V                                +  +  +   
Sbjct: 651 PIYKKVYAEEKKNYKIPVT-------------------------------VPDLTPETNW 679

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
            + +AFEID +W I   + RQ+ IDQA S NLY+ +    K+L  ++ +AW +G+KT YY
Sbjct: 680 FYKSAFEIDQLWSIRQNASRQRHIDQAISFNLYVKNSVKAKELLEMHMEAWQLGMKTIYY 739

Query: 903 LRS 905
            RS
Sbjct: 740 TRS 742


>gi|257062092|ref|YP_003139980.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp.
           PCC 8802]
 gi|256592258|gb|ACV03145.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 8802]
          Length = 769

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 219/787 (27%), Positives = 363/787 (46%), Gaps = 86/787 (10%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
             PK++++  D +    N  ++  +V  AC G  +V+   + +     +  G++  +++ 
Sbjct: 29  ATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLTTRLRHGITTREIQD 87

Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            LI  +  +    EPN+  V  R  +  L ++ L          +       Y +     
Sbjct: 88  NLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTL---------VSRGYQYGNYEKTVHTK 138

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
           +E       L       +L    + +  + D  ++Y G  +L  RY L       E+PQ 
Sbjct: 139 VEAQEYDSRLLT-YSSEELREAGSWINPDWDTDYDYAGAVLLTSRYLL-----PNELPQE 192

Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
             +  ++ LA  E    +   A +FY  +++     +TP L N       L+SCF+ ++ 
Sbjct: 193 ALLSCSLLLATVESPENRLLWARQFYEAIATRKVSLATPILANLRVPGGSLTSCFIVSID 252

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  IF  +   A ++K  GG+G + + +R  G+ +      S G+IP++K+ NDTA+A
Sbjct: 253 DSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANASGGIIPWIKLLNDTAIA 312

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           VNQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     +PD FM+RV   +
Sbjct: 313 VNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLILPDEFMRRVINKS 372

Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
            WTL  P EV      +L +L+G++FE AY   ER+  + +I ++++I A  L++ ++  
Sbjct: 373 EWTLVDPYEVRTKLGIELAELWGEKFEQAYGLIERELGQ-KITLYKRIQARDLFKTIMRS 431

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHF 611
             ETG P++ FKD  N  +P +H G +   NLCTE   N S  +E   CNL S+NL    
Sbjct: 432 QVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPGKEAHSCNLVSLNLANL- 490

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +  +L S  R AVR+LDN IDI  +  E AK  N+ +R IG+G MG    L    
Sbjct: 491 -----EASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYRTIGIGCMGLADWLAKNR 545

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S   +   ++  E   +    AS+ELA+ER  Y +F+GS W QG        + A+
Sbjct: 546 LSYDS---LGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGSEWSQGKL------IGAK 596

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D    N T +  W +L + +K  G+RNS+  AIAP  + + + G + SI P Y   + 
Sbjct: 597 SVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFY 656

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G   +   F          W                     P++      T   +
Sbjct: 657 DKWAKGTVPIAPPF-----IDESFW-------------------FYPEN-----KT---L 684

Query: 852 DPMWLIESASRRQKWIDQAQSL----NLY----LDE-----PSGKKLDFIYRQAWLMGLK 898
           D   ++++ +  Q+W+D   S+    NL       +      + K +      AW  G K
Sbjct: 685 DQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSITAKDIFDTLVLAWQSGCK 744

Query: 899 TTYYLRS 905
             YY+R+
Sbjct: 745 AVYYVRT 751


>gi|194366072|ref|YP_002028682.1| ribonucleotide-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia R551-3]
 gi|194348876|gb|ACF51999.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 787

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 243/800 (30%), Positives = 372/800 (46%), Gaps = 93/800 (11%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALI 203
           I  + G   + F ++RL+  ++   +    +       + +        +S  DL   LI
Sbjct: 29  ITKEAGNRRLPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLI 88

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             + + ++   P + +  AR  L +L +           +   +++   Y  Y       
Sbjct: 89  REAESRVDLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVGLKYGSYVGLQESL 140

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
            + G+ +  +       +L      +  ERD  F Y GL +L  RY          E+PQ
Sbjct: 141 ADRGIYSNDILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQ 200

Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             ++ +A+ L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 201 ERWLTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 260

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TA
Sbjct: 261 VDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTA 320

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGAV  YL+ WH D+E F+DLR N GD R R HD+ T+  +PDLFM+ V +
Sbjct: 321 VSVDQLGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVER 380

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKM 549
            A W LF P EV      Y ++F  E      + +   +    E    R + A+ L++++
Sbjct: 381 RADWYLFDPHEVKQAKGWYLQDFYDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKRI 440

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------- 595
           +    ETG+P++ ++D  N R+P +H G+++SSNLCTEI  N S                
Sbjct: 441 MLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIVT 500

Query: 596 -----ETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                +  VCNL SINL    +        D L   I   VR+LDNVID+N   + +A  
Sbjct: 501 TRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATI 560

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +NH +RAIGLG  G+   L    I + S +A ++AD   E I+F  I AS +LA+E+G+Y
Sbjct: 561 TNHKYRAIGLGTFGWHHLLAQQSIQWESQDAEQLADRLYERINFLTIQASAQLAKEKGSY 620

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F GS W  G +  D                 S   WD L + V T G+RN   +A+AP
Sbjct: 621 PMFAGSDWHNGRYFSD--------------RDYSGAAWDSLAREVATHGLRNGWLLAVAP 666

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + A I G + SIDP Y   Y +        V                           
Sbjct: 667 NMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP------------------------ 702

Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                   +  +    +   A+++D    +   +RRQ+ +DQ+ S NLY+        L 
Sbjct: 703 -------GLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLL 755

Query: 887 FIYRQAWLMGLKTTYYLRSR 906
            ++  AW  GLKTTYY+RS 
Sbjct: 756 ELHLSAWREGLKTTYYVRSN 775


>gi|332708566|ref|ZP_08428540.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya
           majuscula 3L]
 gi|332352663|gb|EGJ32229.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya
           majuscula 3L]
          Length = 753

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 214/786 (27%), Positives = 359/786 (45%), Gaps = 86/786 (10%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              ++++  DG+L S +  ++  +VE AC+G +DV+   + +     + DG++  +++  
Sbjct: 14  QGNIQVIKRDGSLTSLDISKIRAVVEWACAG-KDVNPITLEAGLTTRLRDGVTTREIQDN 72

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +  +   + P++  V  R  +  L ++ L                  YP      +
Sbjct: 73  LINCALEMCSPDQPDWRYVAGRLQIWSLWKDTL---------VNRGYEYGDYPRTVRSKV 123

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E G     +       +L    + +  + D  ++Y G  +L  RY L       E+PQ  
Sbjct: 124 ESGQYDPSILT-YTTEELKEAGSWINRDWDTDYDYAGAVLLTRRYLLGD-----ELPQEA 177

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           F+  A+ L   E   ++   A  FY  ++      +TP L N       LSSCF+T++ D
Sbjct: 178 FLTCALLLGSVEVPEDRLGWARRFYEAIAQRKISLATPILANLRIPQGSLSSCFITSIDD 237

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  IF  + + A ++K  GG+G + + +R  G+ + G    S GVIP++K+ NDTA+AV
Sbjct: 238 NLESIFEGITDTARISKNGGGVGVNVSRIRSTGSWVMGKANASGGVIPWIKLLNDTAIAV 297

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     IPD FM+RV     
Sbjct: 298 NQGGRRAGAVTVSVDVWHLDVPEFLEMQAENGDPRRKAYDIFPQLVIPDEFMRRVVNKED 357

Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P EV      +L +L+ +EFE AY+  E       + +++ ++A  L++ ++   
Sbjct: 358 WTLIDPYEVRIKLGIELSELWAEEFESAYQTIEAAIGET-LTLYKTVNARELFKTIMRSQ 416

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-TAVCNLGSINLLAHFA 612
            ETG P++ FKD  N  +P QH G + + NLCTE   N         CNL SINL     
Sbjct: 417 VETGMPYLAFKDTINRANPNQHQGYIPAVNLCTESFSNVEIGHAAHCCNLDSINLANIEE 476

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                  +L +  R AVR+LDN ID++    + A   N  +R IG+G MG    L     
Sbjct: 477 T------ELPNICRLAVRILDNTIDLSTPPFKAAHSHNQKYRTIGVGCMGLADWLAKR-- 528

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            + +   ++      E I ++   AS+ELA ERGAY++F GS W +G        + A+ 
Sbjct: 529 -WLTYNNLKEISNLFEDIGYYCTHASMELAIERGAYAAFDGSEWSKGKL------IGAKP 581

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            +    N      W  L + ++  G+RNS+  AIAP  + + + G + S+ P +   +  
Sbjct: 582 VEWFVENSQHGERWVALSQDIQQFGIRNSHISAIAPNTSSSLVQGCTASVLPVHSKFFYD 641

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G    +    + +    + W                    +  + K         D
Sbjct: 642 KWAKGTVP-IAPPFIKD----NFW--------------------LYHENKNF-------D 669

Query: 853 PMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLMGLKT 899
              ++++ +  Q+WID   S+    NL       +        K +      AW +G K 
Sbjct: 670 QKKVVKAIATIQQWIDTGISMELLFNLNQGVYFPDEPERTLKAKDIYETLVMAWELGCKA 729

Query: 900 TYYLRS 905
            YY+R+
Sbjct: 730 VYYIRT 735


>gi|148259751|ref|YP_001233878.1| ribonucleotide-diphosphate reductase subunit alpha [Acidiphilium
           cryptum JF-5]
 gi|146401432|gb|ABQ29959.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidiphilium
           cryptum JF-5]
          Length = 628

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/682 (29%), Positives = 301/682 (44%), Gaps = 91/682 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY +       E  Q  F RVA        +  + A   Y+
Sbjct: 26  IDRSRDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 77  YISKLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYW 136

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   NGK+ GV+PF++V +   +A++QG  R+G+   YL   H +VEEF++
Sbjct: 137 GNLRSIGEKVGQ-NGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIE 195

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 196 IRRPTGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKD----------------- 238

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                         R +SA +LW ++LT   ETG P+I F D  N   P+ H      V 
Sbjct: 239 ----------GAHVRSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVK 288

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC EITL +  +           L +       ++      I   +R LDNV    I
Sbjct: 289 TSNLCAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQFIEDVMRFLDNVLQDFI 348

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D    ++ +AK +    R++GLG+MGF S L  L+IP+ S  A          I   A +
Sbjct: 349 DNAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRAGADA 408

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ERG                                                  
Sbjct: 409 ASRKLAEERGPCP------------------------------------------DAAEY 426

Query: 757 GMR--NSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G+    S+ MAIAPTA+I+ I G S   I+P   N++++  +SG F+V N  L   L  +
Sbjct: 427 GVMERFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLAAK 486

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
              DE   S++    GS+ +++ + DD K +  TAFE+D  W+IE A+ R  +I Q+QS+
Sbjct: 487 GRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQSI 546

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           N++L      + L  I+ QAW  G+K+ YY RS S    +  + K    +          
Sbjct: 547 NVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADTVSEKVQRHEHGDAANRTAP 606

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +    +   +S T+  EC  CQ
Sbjct: 607 APAPLVAAAASTTNYEECLACQ 628


>gi|326403281|ref|YP_004283362.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium
           multivorum AIU301]
 gi|325050142|dbj|BAJ80480.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium
           multivorum AIU301]
          Length = 628

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/682 (29%), Positives = 301/682 (44%), Gaps = 91/682 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY +       E  Q  F RVA        +  + A   Y+
Sbjct: 26  IDRSRDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 77  YISKLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYW 136

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   NGK+ GV+PF++V +   +A++QG  R+G+   YL   H +VEEF++
Sbjct: 137 GNLRSIGEKVGQ-NGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIE 195

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 196 IRRPTGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKD----------------- 238

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                         R +SA +LW ++LT   ETG P+I F D  N   P+ H      V 
Sbjct: 239 ----------GAHVRSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVK 288

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC EITL +  +           L +       ++      I   +R LDNV    I
Sbjct: 289 TSNLCAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQFIEDVMRFLDNVLQDFI 348

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D    ++ +AK +    R++GLG+MGF S L  L+IP+ S  A          I   A +
Sbjct: 349 DSAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRAGADA 408

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ERG                                                  
Sbjct: 409 ASRKLAEERGPCP------------------------------------------DAAEY 426

Query: 757 GMR--NSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G+    S+ MAIAPTA+I+ I G S   I+P   N++++  +SG F+V N  L   L  +
Sbjct: 427 GVMERFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLAAK 486

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
              DE   S++    GS+ +++ + DD K +  TAFE+D  W+IE A+ R  +I Q+QS+
Sbjct: 487 GRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQSI 546

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           N++L      + L  I+ QAW  G+K+ YY RS S    +  + K    +          
Sbjct: 547 NVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADTVSEKVQRHEHGDAANRTAP 606

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +    +   +S T+  EC  CQ
Sbjct: 607 APAPLVAAAASTTNYEECLACQ 628


>gi|206889598|ref|YP_002247982.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741536|gb|ACI20593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 741

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 181/655 (27%), Positives = 300/655 (45%), Gaps = 84/655 (12%)

Query: 291 FAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLAL-------KETEKEKRAVEF 342
           F      +++L  RY         IE P+  F RVA  +A         E E  +   EF
Sbjct: 8   FELTDNAIEVLKRRYLKKNEDGILIETPEELFTRVATAIAQIDTIYGKSEKEVYRTKEEF 67

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + L++S  F+ ++PTL N+GT   QLS+CF+  V D + GIF A++  A++ K  GG G 
Sbjct: 68  FELMTSLRFLPNSPTLMNAGTPLGQLSACFVLPVEDSMEGIFDAVKYAAIIHKSGGGTGF 127

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R  G  +  T G S G + F+ V +    AV QGG+R+GA    L   H D+ EF
Sbjct: 128 SFSRLRPKGDVVGSTKGISSGPVSFMSVFDSATEAVKQGGRRRGANMGLLRVDHPDILEF 187

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +    DD  +  + N +  + + FMK V  +  + L +P                  
Sbjct: 188 ITCK----DDLTKFTNFNISVGLTEEFMKAVINDEEYELINPRS---------------- 227

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       K+ +++ A  ++  ++   ++ G P I F D  N  +P   +G + ++
Sbjct: 228 -----------GKIVKRLKAKEVFDLIVHQAWKNGEPGIVFLDRINAANPTPSLGEIEAT 276

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C E  L         CNLGSINL     +N  D++ L  T+  AV  LDNVID N + 
Sbjct: 277 NPCGEQPLLPY----ESCNLGSINLAKMVKDNSVDWELLKDTVWKAVHFLDNVIDANKYP 332

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   +++   +R IGLG+MG+   L  L IPY S EA+ +A+E M+FI      AS ELA
Sbjct: 333 LSLIEQNTKANRKIGLGVMGWADMLIQLKIPYNSKEALNLAEELMKFILHEGRLASKELA 392

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG + ++  S++   +                                     +RN+ 
Sbjct: 393 KERGTFPNYAKSIYYDKMP------------------------------------LRNAT 416

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  I+P +   + ++ M G     VN +   E+++  +W +++ 
Sbjct: 417 ITTIAPTGTLSIIAGCSSGIEPLFALCFARNVMDGTRLVEVNPYFKKEMEKIGIWSDSLA 476

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
             +    GSI  I+ IP+++KKI  TA E+ P   I   +  Q+++D A S  + L    
Sbjct: 477 DKIAET-GSIQGIKEIPEEIKKIFVTAHEVSPSEHIRMQAAFQQYVDNAVSKTVNLPNQA 535

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATS--VEKSTLKGVDGKLNAVPVTDPNS 933
           + + +  +Y  A+ +G K     R  S     ++K   +    +++  P   P +
Sbjct: 536 TEEDVREVYLLAYRLGCKGVTVYRDGSRHGQVIQKGKTESPALQISLKPRKRPET 590


>gi|15616798|ref|NP_240010.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681553|ref|YP_002467938.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682109|ref|YP_002468493.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471236|ref|ZP_05635235.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11134536|sp|P57276|RIR1_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|25285846|pir||H84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) [imported] -
           Buchnera sp. (strain APS)
 gi|10038861|dbj|BAB12896.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621842|gb|ACL29998.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624396|gb|ACL30551.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311085921|gb|ADP66003.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086492|gb|ADP66573.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087075|gb|ADP67155.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 761

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 188/789 (23%), Positives = 324/789 (41%), Gaps = 69/789 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG     N  ++  ++  A  GL DVS   V   +    Y+ ++  ++   +I 
Sbjct: 5   LFVTKRDGRKEKINLDKIHKVLNWASEGLDDVSVSQVELCSRIQFYNNITTINIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++               +M  L            
Sbjct: 65  AAADLISQDTPDYQYMAARLAIFHLRKKAYGQFEPPKLYDHVKKMVDLEK---------- 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L ++    + + + + + + RD  F Y  ++ L  +Y     +NG   E  Q  +
Sbjct: 115 -YDENLLKNYSYKEFLQMNSFIDHWRDMNFSYAAVKQLEGKYLIQNRVNGKIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + ++  L     +  +      FYN +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILISACLFSQYPKNVRMNYIHRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I        G IPF K       + +
Sbjct: 234 LNSINATTSSIVKYVSQRAGIGVNAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   ++ A  I  L  +R+      
Sbjct: 294 QGGVRGGAATIFYPIWHLEVESLLVLKNNRGIEENRVRHIDYAIQINKLMYQRMLSGDQI 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           TLFSP +V DL+  +    K+F+  Y  YE+  +  +    + I A+ L+  M+     T
Sbjct: 354 TLFSPSDVPDLYKAFFSDQKKFKKIYLQYEKNKNIRK----KTIKALDLFSLMMQERTST 409

Query: 557 GHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  ++   D CN+ S     +  +  SNLC EITL + S        G I L        
Sbjct: 410 GRIYVQNVDHCNLHSAFNPELSPIRQSNLCLEITLPTKSLNDVHDTDGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D        +VR LD ++D   + +  AKKS  + R++G+G++ F   L    +
Sbjct: 470 GKIKSLDDFKELSILSVRALDEILDYQNYPVLAAKKSAISRRSLGIGVINFAYYLAKNKV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E + ++ + AS ELA+E+GA S F  + +  G  PID+     + 
Sbjct: 530 RYSDGSAHNLTHKTFEAMQYYLLEASCELAKEKGACSLFNHTNYYLGKLPIDTYKKYIDD 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N    L W+ L+ ++K  G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 I----CNEPLHLDWNLLRSKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFISIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            +  G    V      E K+  L  E +   +  + G +                     
Sbjct: 646 VSKDGILRQVVP----EYKKLRLQYELLWD-IPNNTGYLQ-------------------- 680

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                  A   QK+IDQ+ S+N +        ++   K+L +    ++ +GLKT YY  +
Sbjct: 681 ------LAGIMQKFIDQSISVNTHYDPARFLNNKIPMKQLLYDLLLSYKLGLKTLYYQNT 734

Query: 906 RSATSVEKS 914
           R  +  +++
Sbjct: 735 RDGSEDDQN 743


>gi|159030367|emb|CAO91262.1| nrdA [Microcystis aeruginosa PCC 7806]
          Length = 770

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 216/783 (27%), Positives = 364/783 (46%), Gaps = 86/783 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+  S N  ++  +VE AC G + V+S  + +     + DG++  +++  LI 
Sbjct: 34  IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  +   +EP++  V  R  +  L ++ L                  Y +     ++  
Sbjct: 93  CALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VVRGYQYGNYEKTVKTQVKNR 143

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           +    +     + +L    + +  + D  ++Y G  ++  RY L       E+PQ   + 
Sbjct: 144 LYDERILI-YSEAELKEAGSWINPDWDIDYDYAGALLITSRYLLKN-----ELPQEALLT 197

Query: 324 VAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            ++ LA  E    +   A +FY  ++      +TP L N  T    L+SCF+ ++ D L 
Sbjct: 198 CSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDDSLE 257

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF  +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+AVNQG
Sbjct: 258 SIFSEITNAARISKNGGGVGVNVSRIRSTGSWVMGKANASGGIIPWIKLLNDTAIAVNQG 317

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     I D FM+RV   A WTL
Sbjct: 318 GRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVITKAEWTL 377

Query: 502 FSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P EV      +L +L+G+EFE AY   E   D+ E+ +++KI+A  L++ ++    ET
Sbjct: 378 VDPYEVRTKLGIELAELWGEEFEEAYRLVEANLDK-EVLLYKKINARDLFKSIMRSQVET 436

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQ 615
           G P+I FKD  N  +P +H G + S NLCTE   N +  +    CNL S+NL        
Sbjct: 437 GMPYIAFKDTINRANPNKHDGYIPSVNLCTESFSNVTPDKTAHCCNLVSLNLANI----- 491

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D +++ S  + AVR+LDN IDI     + AK  N  +R IG+G MG    L    + Y 
Sbjct: 492 -DKEEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKLSYN 550

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +   +       E I +    +S+ELA+ERGAY +F GS W QG        + A+  + 
Sbjct: 551 NRSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL------IGAKPLEW 601

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              N      W +L + ++  G+RNS+  AIAP  + + + G + S+ P Y   +     
Sbjct: 602 FLTNAVQPQRWQQLAEDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWA 661

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G   +   F+                                      +     ++   
Sbjct: 662 KGTVPIAPPFIEEAF--------------------------------WFYPENKNLEQQQ 689

Query: 856 LIESASRRQKWIDQAQSLNL--YLDE-----------PSGKKLDFIYRQAWLMGLKTTYY 902
           ++++ +  Q+WID   S+ L   L+E            + K +      AW +G K  YY
Sbjct: 690 VVKAIAAMQEWIDTGISMELLFNLNEGVYFPAEPNRCLTAKDIFDTLIMAWELGCKAIYY 749

Query: 903 LRS 905
           +R+
Sbjct: 750 VRT 752


>gi|254524235|ref|ZP_05136290.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
 gi|219721826|gb|EED40351.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
          Length = 787

 Score =  430 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 245/800 (30%), Positives = 374/800 (46%), Gaps = 93/800 (11%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALI 203
           I  + G   + F+++RL+  ++   +    +       + +        LS  DL   LI
Sbjct: 29  ITKEAGNRRLPFDAERLQRSIDTVHAEFPQLDVSDYRRVVQAMVERKPSLSADDLVDLLI 88

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             + + ++   P + +  AR  L +L +           +   +++   Y  Y       
Sbjct: 89  REAESRVDLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVSLKYGSYVGLQESL 140

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
            + G+ +  +       +L      ++ ERD  F Y GL +L  RY          E+PQ
Sbjct: 141 ADRGIYSNDILRCYSKEELQQAGEMIEPERDRLFAYNGLYLLATRYLASDRSREVYELPQ 200

Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             ++ +A+ L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ T
Sbjct: 201 ERWLTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 260

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L GI+ +  + A ++K+ GG+G     VR  GA I G    S GV+P++K  N+TA
Sbjct: 261 VDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVPNSSGGVVPWIKQLNNTA 320

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           V+V+Q G+RKGAV  YL+ WH D+E FLDLR N GD R R HD+ T+  +PDLFM+ V +
Sbjct: 321 VSVDQLGQRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVER 380

Query: 496 NAGWTLFSPDEVSDLHDLYGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKM 549
            A W LF P EV      Y ++F  E      + +   +    E    R + A+ L++++
Sbjct: 381 RADWYLFDPHEVKSAKGWYLQDFYDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKRI 440

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------- 595
           +    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI  N S                
Sbjct: 441 MLSQLETGNPFLFYRDEVNRKNPNKHAGMVYSSNLCTEILQNMSPTRMIQEIVSGDQIVT 500

Query: 596 -----ETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                +  VCNL SINL    +        D L   I   VR+LDNVID+N   + +A  
Sbjct: 501 TRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATI 560

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +N  +RAIGLG  G+   L    I + SP+A ++AD   E I+F  I AS +LA+E+G+Y
Sbjct: 561 TNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEQLADRLYERINFLTIQASAQLAKEKGSY 620

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F GS W  G +  D                 S   WD L + V T G+RN   +A+AP
Sbjct: 621 PMFAGSDWHNGRYFSD--------------RGYSGADWDSLAREVATHGLRNGWLLAVAP 666

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
             + A I G + SIDP Y   Y +        V                           
Sbjct: 667 NMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP------------------------ 702

Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                   +  +    +   A+++D    +   +RRQ+ +DQ+ S NLY+        L 
Sbjct: 703 -------GLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLL 755

Query: 887 FIYRQAWLMGLKTTYYLRSR 906
            ++  AW  GLKTTYY+RS 
Sbjct: 756 ELHLSAWREGLKTTYYVRSN 775


>gi|290473789|ref|YP_003466663.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus
           bovienii SS-2004]
 gi|289173096|emb|CBJ79869.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 763

 Score =  430 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 188/802 (23%), Positives = 310/802 (38%), Gaps = 69/802 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     +  ++  +V  A  GL++VS   V   +    YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTADIHETMI 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  + P+Y  + AR  +  LR++                      ++  R +  
Sbjct: 64  KAAADLISGDAPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------HDHVVRMVNL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G   + L E     +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDKHLLEDYSKEEFEQMDSFINHLRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSTYPKETRLSYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I        G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRDGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +     +I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYESDVTIRK----ERIKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPMNNINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +  +L      AVR LD+++D   + I  AK+ +   R +G+G++ F   L    
Sbjct: 469 LGAINNLTELEELAELAVRALDSLLDYQDYPIIAAKQGSMGRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +  ++ E I ++ + AS  LA+E+GA   F  + + QG+ PID+     +
Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEKGACPWFGETTYAQGILPIDTYKKTLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                       + W+ L+  ++  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 ----TLTREPLHMDWETLRNDIRQHGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V                 ++  +   DG +                    
Sbjct: 645 KASKDGILRQVVPEYNRLKGAY-----ELLWQMPGTDGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904
                       QK+IDQ+ S N   D            +L      A+  G+KT YY  
Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKDLLLAYKYGVKTLYYHN 733

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
           +R      +  L+ V    ++ 
Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755


>gi|304414249|ref|ZP_07395617.1| ribonucleotide reductase alpha subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283463|gb|EFL91859.1| ribonucleotide reductase alpha subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 762

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 194/793 (24%), Positives = 316/793 (39%), Gaps = 73/793 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +V+ A  GL +VS   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRKERINLDKIHRVVDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  + P+Y  + AR  +  LR++        P             E+  + +  
Sbjct: 64  KAAADLISTDAPDYQYLAARLAVFHLRKKAYGQFEPPPL-----------FEHVSKMVAM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L       +   + + + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 KKYDQHLLADYSAAEFAEMESFIDHWRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L        +      FYN +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFSSYPRESRLDYVKRFYNAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I  A            G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINAASSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLLKGED 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE+          ++I AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQTEFERLYMKYEQDQTIR----QQRIKAVDLFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  SP       V  SNLC EI L +          G I L    A N
Sbjct: 409 TGRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTQPLNDINDETGEIALCTLSAFN 468

Query: 615 QFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               D+   L      AVR LD ++D   + I  A+  +   R +G+G++     L    
Sbjct: 469 LGAIDRLEELEELATLAVRALDALLDYQDYPIAAARNGSLGRRTLGIGVINLAYYLAKNG 528

Query: 672 IPYASPEAVE----IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
           + Y++ +  +    +   + E I ++ + AS +LA+E+GA   F  + + QG+ PID+  
Sbjct: 529 VGYSNADLKKNANSLTHRTFEAIQYYLLKASNDLAREKGACPWFDQTTYAQGLLPIDTYK 588

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N    L W+ L++ +K  G+RNS   A+ P+ T + I   +  I+P   
Sbjct: 589 KYLDEI----CNEPLHLDWEGLRQNIKQWGLRNSTLSALMPSETSSQISNATNGIEPPRG 644

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K++  G    V        +        ++ D+  +DG +                
Sbjct: 645 YVSIKASKDGILRQVVPEYERLKEHY-----QLLWDIPNNDGYLQ--------------- 684

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900
                           QK++DQA S N          ++   K+L      A+ +G+KT 
Sbjct: 685 -----------LVGIMQKFVDQAISANTNYDPTRFSDNKVPMKQLLKDLLTAYKLGIKTL 733

Query: 901 YYLRSRSATSVEK 913
           YY  +R      +
Sbjct: 734 YYHNTRDGADDVQ 746


>gi|229916486|ref|YP_002885132.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium
           sp. AT1b]
 gi|229467915|gb|ACQ69687.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Exiguobacterium sp. AT1b]
          Length = 755

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 232/782 (29%), Positives = 368/782 (47%), Gaps = 91/782 (11%)

Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL-ETALIFSSRTLIE-KEPNY 216
              +  +++   +    +S +       + +       D+    L   +  +++ +EP++
Sbjct: 17  LADVSSLIQSIQTRYPHLSVERYEERAIRALETKTLTQDVVYDLLTMHALDMLKAEEPDW 76

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
             V     L +L  E       +            + +       + +    L ++    
Sbjct: 77  TFVATEMYLNRLYLEAARNRGYEASM-----RYGNFYQLVETLTSKRIFTSALLDTYSKE 131

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE- 334
           D+ +L   +   RD  F Y+GL+ L DRY    +  +  E+PQ  FM +AM L  KE E 
Sbjct: 132 DMDHLETLIDPSRDRLFTYIGLRTLSDRYLGRDHVKNLYELPQERFMVIAMTLMQKEDET 191

Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            + K   E Y  LS+ +   +TPTL N+G  + QLSSCF+ TV D L GI+ +  + A L
Sbjct: 192 TRLKLVEEAYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLRGIYDSNTDVATL 251

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+G     +R  G+ I G  G S G +P++K  N+TAV+V+Q G R+G++  YL+
Sbjct: 252 SKGGGGIGVYLGKIRSRGSDIKGFKGVSSGALPWMKQLNNTAVSVDQLGMRQGSIAVYLD 311

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV------ 507
            WH D+ EFLD + N GD+R RTHD+ T   +PDLFM+ V     W LF P E+      
Sbjct: 312 IWHKDIFEFLDAKLNNGDERLRTHDLFTGVCLPDLFMRTVEARGDWHLFDPHEIRTVMGY 371

Query: 508 ----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                      G  F   Y       +   +     + A+ L ++ +    ETG P++ F
Sbjct: 372 SLEDYFDESENGGSFTEKYMECVNTPELSRV----TVPAIDLVKRYMRSQLETGTPYMFF 427

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGS 604
           +D  N  +P +H G+++SSNLC+EI  N S                     +  VCNL S
Sbjct: 428 RDAVNRANPNKHAGMIYSSNLCSEIAQNMSATTIEEEYTQDGKIVITKTPGDFVVCNLSS 487

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           I L           D L   I   +R+LDNVID+N   + +A  +N  +RA+GLG  G+ 
Sbjct: 488 IALARAVKA-----DVLERLIPIQMRMLDNVIDLNTIEVPQAMITNQKYRAVGLGTFGWH 542

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L L  I + S +AV+ A++  E I++  I AS+ELA+E+GA+  F+GS W  G +   
Sbjct: 543 HLLALEGIRWESVDAVQYAEKLYEKIAYLTIQASMELAKEKGAFGVFEGSEWHTGEYF-- 600

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                 + R+  + +    L WD L + V   G+RN+  MA+AP ++ A I G + SIDP
Sbjct: 601 ------KRRNYRSHDD---LDWDGLAEAVHQNGVRNAYMMAVAPNSSTAIIAGSTASIDP 651

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            Y+ +Y +   +    V                                +  +  D    
Sbjct: 652 VYKKVYSEEKKNYKIPVT-------------------------------VPDLTPDTNWF 680

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           + +AFEID +W I   + RQ+ IDQA S NLY+ ++    +L  ++ +AW +G+K+ YY 
Sbjct: 681 YKSAFEIDQLWSIRQNAARQRHIDQAISFNLYVKNDVKATELLAMHLEAWSLGMKSIYYT 740

Query: 904 RS 905
           RS
Sbjct: 741 RS 742


>gi|154505111|ref|ZP_02041849.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149]
 gi|153794590|gb|EDN77010.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149]
          Length = 763

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 224/727 (30%), Positives = 348/727 (47%), Gaps = 93/727 (12%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
           P +  + AR L  +         +   Q+ T  E+   Y +       + +    + E  
Sbjct: 86  PKWEFIAARLLYFQ-------FSFHLKQEETRRELSDFYKKLVY-LTRQNLYGSYILEHY 137

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE 332
              +L+     LK ER+  F + GL +L  RY +  +    +E PQ  F+ +A+ LA+ E
Sbjct: 138 SREELLLAETYLKAERNNLFTFSGLDLLLKRYVIRTHDHIPLESPQEMFLGIALHLAMNE 197

Query: 333 -TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
             ++     +FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI+ ++   A
Sbjct: 198 RNDRMLWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEGIYRSIDNFA 257

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            ++K+ GG+G  +  VR  G++I G  G + GVI ++++ NDTAVAV+Q G R+GAV  Y
Sbjct: 258 QVSKFGGGMGMYFGKVRASGSNIRGFEGAAGGVIRWIRLVNDTAVAVDQLGMRQGAVAVY 317

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-- 507
           L+ WH D+ EFL LR N GDDR + HD+  A   PDLF K   ++    W L  P E+  
Sbjct: 318 LDVWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDMDQNWYLMCPHEIFQ 377

Query: 508 ---SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                L D +G+E+E  Y +  + A   +    R ++   + R +L    ETG P+   +
Sbjct: 378 AKGYHLEDYFGEEWERRYLDCVQDARISK----RTVTLKDIIRLVLRSAAETGTPFTFNR 433

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSEETAVCN 601
           D  N  +P  H G+++ SNLCTEI  N                       +   E  VCN
Sbjct: 434 DTVNRMNPNGHAGMIYCSNLCTEIAQNMQAIEEVSKEVQTTDGDTVVVTVTRPGEFVVCN 493

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L S++L         D   +   + TAVR LDNVID+N +    AK +N  +R+IGLG+ 
Sbjct: 494 LASLSLGHLPVT---DTSYMEEIVSTAVRALDNVIDLNFYPTPYAKLTNQKYRSIGLGVS 550

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G+   L    I + S E ++ AD   E I++ AI AS  LA+E+ +YS F GS W  G  
Sbjct: 551 GYHHMLAKHGIIWESEEHLKFADTVFETINYAAILASTNLAEEKESYSLFNGSDWQSG-- 608

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                                   W  L+K+V T GMRN+  +A+APT++ + I G +  
Sbjct: 609 ------------AYFEKRDYHSEKWLALQKKVATQGMRNAYLLAVAPTSSTSIISGTTAG 656

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           +DP  +  +++         V                                  +    
Sbjct: 657 LDPILKRYFLEEKKGSMLPRVAP-------------------------------ELSPAT 685

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900
              +  A  ID  + I +   RQ+ IDQAQS+N+Y+ ++ + +++  +Y +AW  G+KT 
Sbjct: 686 YWYYKNAHLIDQTYSIRACGVRQRHIDQAQSMNIYITNDFTMRQIFNLYLKAWEEGVKTI 745

Query: 901 YYLRSRS 907
           YY+RS+S
Sbjct: 746 YYVRSKS 752


>gi|166367093|ref|YP_001659366.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa
           NIES-843]
 gi|166089466|dbj|BAG04174.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa
           NIES-843]
          Length = 770

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 215/783 (27%), Positives = 361/783 (46%), Gaps = 86/783 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+  S N  ++  +VE AC G + V+S  + +     + DG++  +++  LI 
Sbjct: 34  IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  +   +EP++  V  R  +  L ++ L                  Y +     +++ 
Sbjct: 93  CALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VARGYQYGNYEKTVKTQVKKL 143

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           +    +     + +L    + +  + D  ++Y G  ++  RY L       E+PQ   + 
Sbjct: 144 LYDERILI-YSEAELKEAGSWINSDWDIDYDYAGALLITSRYLLKN-----ELPQEALLT 197

Query: 324 VAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            ++ LA  E    +   A +FY  ++      +TP L N  T    L+SCF+ ++ D L 
Sbjct: 198 CSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDDSLE 257

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF  +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+AVNQG
Sbjct: 258 SIFDEITNAARISKNGGGVGVNVSRIRATGSWVMGKANASGGIIPWIKLLNDTAIAVNQG 317

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     I D FM+RV   A WTL
Sbjct: 318 GRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVINKAEWTL 377

Query: 502 FSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P EV +       +L+G+EFE AY   E   D+ EI +++KI+A  L++ ++    ET
Sbjct: 378 VDPYEVRNKLGIELAELWGEEFEEAYRLVEANLDQ-EILLYKKINARDLFKSIMRSQVET 436

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQ 615
           G P+I FKD  N  +P +H G +   NLCTE   N +  +    CNL S+NL        
Sbjct: 437 GMPYIAFKDTINRANPNKHDGYIPGVNLCTESFSNVTPDKTAHCCNLVSLNLANI----- 491

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D +++ S  + AVR+LDN IDI     + AK  N  +R IG+G MG    L    + Y 
Sbjct: 492 -DREEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKLSYN 550

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +   +       E I +    +S+ELA+ERGAY +F GS W QG        + A+    
Sbjct: 551 NLSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL------IGAKPVAW 601

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
              N      W +L   ++  G+RNS+  AIAP  + + + G + S+ P Y   +     
Sbjct: 602 FLNNAVQPQRWQQLATDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWA 661

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G   +   F+                                      ++    ++   
Sbjct: 662 KGTVPIAPPFIEEAF--------------------------------WFYSENKNLEQQQ 689

Query: 856 LIESASRRQKWIDQAQSL----NLY----LDEP-----SGKKLDFIYRQAWLMGLKTTYY 902
           ++++ +  Q+WID   S+    NL       E      + K +      AW +G K  YY
Sbjct: 690 VVKAIATMQEWIDTGISMELLFNLNEGVYFPEEPNRCLTAKDIFDTLVMAWELGCKAIYY 749

Query: 903 LRS 905
           +R+
Sbjct: 750 IRT 752


>gi|146304479|ref|YP_001191795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera sedula DSM 5348]
 gi|145702729|gb|ABP95871.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera sedula DSM 5348]
          Length = 823

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 205/868 (23%), Positives = 362/868 (41%), Gaps = 114/868 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+ ++  DG    F  +++   +      L D     +  +  +N  D  ++   L   +
Sbjct: 12  KISVIKRDGRREEFKLEKILSKLGP----LHDEIVDGIAKDVIQNSTDNVINTRSLADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      + P    +  +++L ++   V                              
Sbjct: 68  ERNLIEGSLEHPELMDLAKKYVLARIYNHVFGK--------------------------- 100

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320
                       +FD           +D    Y  L++L  RY L        IE PQ  
Sbjct: 101 --------GKWSEFD----------PKDLLISYNALKVLEARYLLKDPETLRYIETPQMM 142

Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           F RVA  LA  E +K  +     +FY ++SS  F+ +TP L NSGTR   LS+CF+  V 
Sbjct: 143 FKRVASYLAKVEQDKNVQQDAAQKFYEIMSSLKFVPNTPALMNSGTRLGILSACFVLPVR 202

Query: 378 DDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           D +      GI+  L+  A++ +  GG G D++ +R  G  +  T G + G + F+K+ +
Sbjct: 203 DSMTSPSGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMKIFD 262

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V QGGKR+GA    +  WH D+E+F+  +     D  +  + N +  + D FM+ 
Sbjct: 263 VSTDVVKQGGKRRGANMGVMHAWHADIEDFIHAKTGELKDV-QLQNFNISVGVYDYFMEA 321

Query: 493 VTQNAGWTLFSPDEV--SDLHDLYGKEFEIAYENYER----------------------- 527
           V +     L +P +         Y       Y   E                        
Sbjct: 322 VMKEEQVPLITPRKTKIPGTDHEYYIVKARNYMREEWVQEEILRELEEKGSVYLDESKII 381

Query: 528 ------QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                      E  V R ++A  L+ +++   +++G P + F D  N R P  ++G + +
Sbjct: 382 TVDEALAIAEKEGAVIRWVNARTLFEQIVKGAWDSGDPGLLFIDEINRRHPTWYLGKIQA 441

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGS+NL             D+D LA+TIR AVR LDNV+D
Sbjct: 442 TNPCGEEPLLP----WESCNLGSLNLEKFVKERDGTPYIDWDDLANTIRYAVRFLDNVVD 497

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + + + +++    R +GLG+MG   AL  L IPY S +AV ++    +FI +HA+  
Sbjct: 498 ANRYPLPQIEQATKRTRKVGLGVMGLARALIKLGIPYDSVDAVYVSYYLAKFIYYHAMKT 557

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGL---------LAEVRDELAMNRTSRLPWDE 748
           S+ELA+E+G++ ++    +         +                 +  M+   +L    
Sbjct: 558 SIELAKEKGSFPAYDPVRYKDVWESARELDEILTISGIRGKPSDYAKKLMSEAEKLDVTV 617

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK      G+RN+  +++APT TI+ I G S SI+P +   ++++   G F  ++   + 
Sbjct: 618 LKDMRLKYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGKFMEIDPLFLE 677

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L++ +L    ++  +    G +G+   +P  ++K+  TA E++PM+ +   +  Q+W D
Sbjct: 678 YLRKYELDTPDVVKKIAET-GEVGDNPFVPKTIRKLFRTAHEVEPMYHVLHQAAWQQWND 736

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAV 926
              S  + L  E     ++ +Y  AW +G+K     R +S +  V    LK    + +  
Sbjct: 737 SGTSKTINLRSEEPADTVEKVYMTAWKLGIKGITVYRDKSKSQQVIYFGLKKEREEKSKA 796

Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
             +        + +         C+ C+
Sbjct: 797 LPSSLRMEKKFVEVSE--NFAGGCKTCE 822



 Score = 48.7 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 24/103 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  + VIKR+G    F   KI        ++  G          +I+  + +  +    
Sbjct: 9   SLSKISVIKRDGRREEFKLEKI--------LSKLGPLH------DEIVDGIAKDVIQNST 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQS-----GHHKITREYVLYR 122
            +  +   +      D VE +L++          + ++YVL R
Sbjct: 55  DNVINTRSLA-----DIVERNLIEGSLEHPELMDLAKKYVLAR 92


>gi|15613064|ref|NP_241367.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           halodurans C-125]
 gi|10173114|dbj|BAB04220.1| ribonucleoside-diphosphate reductase alpha subunit [Bacillus
           halodurans C-125]
          Length = 726

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 357/743 (48%), Gaps = 94/743 (12%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           LE+  + +   +  ++P +  +TAR  LE+L   V              +    + E   
Sbjct: 34  LESMRMKAMDEISAEQPEWTFITARIYLEELYNSVKEQRGL-------AKPYTQFYELIE 86

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM 316
             +++G+  + L       ++  L   L  E+D  F Y+GL+ L DRY     + + +E+
Sbjct: 87  VLVDKGIYEKDLLNRYTKEEINELGEHLNQEKDELFTYIGLKTLADRYLARLYDRTLMEL 146

Query: 317 PQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           PQ  FM +AM L  KE  +++     E Y  LS+ +   +TPT  N+G    QLSSCF+ 
Sbjct: 147 PQERFMVIAMSLMKKEVNSQRLSLVKEAYWALSNLYMTVATPTFANAGKAVGQLSSCFID 206

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D L GIF +  + A ++K  GGLG     +R  G+ I      S GV+P++K  N+ 
Sbjct: 207 TVDDSLRGIFDSCTDAATVSKSGGGLGIYLGKIRAKGSSIKNYQNVSSGVLPWMKQLNNV 266

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           AV+V+Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ TA  +PDLFM+ V 
Sbjct: 267 AVSVDQLGQRQGAIAVYLDIWHKDIFSFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVE 326

Query: 495 QNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
               W LF P E+                    F   YE      D        ++ A+ 
Sbjct: 327 ARDNWYLFDPHEIRQKMGFSLEDSYDEQKGSGTFRERYEACVNNPDLSRT----EVPAIE 382

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595
           + ++++    ETG P++ ++D  N  +P +H G+V+ SNLCTEI  N S           
Sbjct: 383 IMKRIMISQLETGSPFMYYRDEANRMNPNKHEGMVYGSNLCTEIIQNMSPTTVVEEKTED 442

Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                     +  VCNL S++L     +     D L   I   VR+LDNVID+N   +++
Sbjct: 443 GKILITKQPGDYVVCNLSSLSLARVVED-----DVLERLIPIQVRMLDNVIDVNRIEVKQ 497

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           A+++N  +RAIGLG  G+   L    I + S EA+  ADE  E I++  I AS++LA+E+
Sbjct: 498 AEQTNQKYRAIGLGTYGWHHLLAKKGIAWESEEAIRYADELYETINYLTIQASMKLAEEK 557

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GAY  F GS W+ G              +     + +   W EL ++VK  G+RN   +A
Sbjct: 558 GAYPMFGGSDWETG--------------EYFERRQYTTDKWTELAEQVKEKGLRNGYLLA 603

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +AP AT A I G + SIDP +Q  YV+   +    V                        
Sbjct: 604 VAPNATTALIGGTTASIDPIFQKTYVEEKKNYRIPVTAP--------------------- 642

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                      +  +    + +A+ ID  W I     RQ+ +DQ+ S NLY+      K+
Sbjct: 643 ----------DLSPETTWYYKSAYHIDQTWSIRQNGARQRHVDQSISFNLYVSNTIRAKE 692

Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907
           L  ++  AW  GLKTTYYLRS S
Sbjct: 693 LLELHLLAWKEGLKTTYYLRSTS 715


>gi|331035508|gb|AEC53065.1| ribonucleotide-diphosphate reductase subunit A [Synechococcus phage
           S-CRM01]
          Length = 770

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 197/839 (23%), Positives = 342/839 (40%), Gaps = 95/839 (11%)

Query: 138 DAPIAPKLKIMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           +     ++ +   +G      +  ++  +VE AC GL  VS   +  ++    YDG++  
Sbjct: 2   EEMTTKEIYVKKRNGRGTEPLDLDKIHTMVEAACDGLSRVSPSQIEIQSQLQFYDGITTE 61

Query: 197 DLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           D++  LI S+  LI  + PNY    AR LL  LR+ +   ++                  
Sbjct: 62  DIQATLIRSAADLISLENPNYQYAAARLLLFSLRKSIYHKMWDSWSLQDQ---------- 111

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSR 313
               I+  V    +     D +   L N + ++RDF F Y  ++ +YD+Y       G  
Sbjct: 112 IAYGIDNNVYDPAILTYYTDEEFEILNNYIDHDRDFLFTYAAMRQVYDKYLVQDRSTGKV 171

Query: 314 IEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
            E PQ  +M  A        +  +      +Y+ +S  +    TP +    T+  Q +SC
Sbjct: 172 YETPQFCYMLNAATTFHKYPKATRLNYVKAYYDAISKHYLNLPTPNIAGVRTKTRQYASC 231

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L    DDL  IF +     +      G+G +   +R LG  +        GVIP+LK  
Sbjct: 232 VLIETDDDLRSIFTSATAVGLYTSQRAGIGLNPGRIRALGDKVRNGEISHTGVIPYLKHF 291

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
              A    Q G R G   A+   WH ++++ L L+ N G +  R   ++ +  +  LF +
Sbjct: 292 ETAAKCTTQNGLRGGGATAHFPIWHKEIQDILVLKNNKGTEDNRVRKLDYSIQLSSLFYQ 351

Query: 492 RVTQNAGWTLFSPDEVSDLHDLY-GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           R   ++  TLFSP++V  L+D +  +EF+  Y  YE  +D  +++    I A  L+ +++
Sbjct: 352 RFIDDSYITLFSPNDVPGLYDAFATEEFDELYREYEANSDIPQVR----IPARQLFMELI 407

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602
               ETG  +I   D CN  S    +  V  SNLC EITL +           E A+C L
Sbjct: 408 KERAETGRIYIMNMDHCNTHSSF--LVSVFMSNLCQEITLPTRPLFDIHDIYGEIALCIL 465

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            +IN+      +      +      AVR LD +ID   + +  A+ S  + R++G+G +G
Sbjct: 466 AAINVGKIRHLH-----DMQHLCDLAVRALDELIDYQEYPLVAAEISTKSRRSLGVGFIG 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y   +A+    E  E + ++ + AS  LA+E+GA S F  + +  G+ P
Sbjct: 521 VAQYLAKKKVKYGDKQALVYMHELTEALQYYLLEASNNLAKEKGACSKFNETKYSDGLLP 580

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           ID      +           +L W+ L++++K  G+RNS   A  P+ + + +C  +  I
Sbjct: 581 IDHYKKDVDGI----CPPNYKLDWEVLREKIKVFGLRNSTLSAQMPSESSSVVCNTTNGI 636

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    L VK +  G    +                          G+          LK
Sbjct: 637 EPPRDYLSVKKSKKGTLKQIVP----------------------SYGT----------LK 664

Query: 843 KIHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWL 894
             +   +++      +   +  QK++DQ+ S N          +E     L     QA+ 
Sbjct: 665 NDYTLLWDMESMEGYLNIVAVMQKFMDQSISANTSYNPKNYPNNEVPASILIMDLLQAYK 724

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +G+KT YY  +  +   E++ ++                      + +    D  C+ C
Sbjct: 725 LGIKTLYYHNTYDSKGEEETLVEN---------------KVLDEDVLALLECDETCDSC 768


>gi|126658927|ref|ZP_01730069.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
 gi|126619725|gb|EAZ90452.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
          Length = 768

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 216/786 (27%), Positives = 361/786 (45%), Gaps = 86/786 (10%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             K+++   DG+  + N  ++  +V  AC+  +DV+S  + +     + DG++  +++  
Sbjct: 29  ESKIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNSIALEAGLTTRLRDGITTREIQDN 87

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +  +    EP++  V  R  +  L ++ L                  Y       +
Sbjct: 88  LINCALEMCSPNEPDWRYVAGRLHIWSLWKDTL---------VNRGYQYGNYETTVKTKV 138

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E G     L       +L    + +  + D  ++Y G  +L  RY L       E+PQ  
Sbjct: 139 ETGQYDNRLLT-YSKTELKEAGSWINPDWDTDYDYAGAVLLTSRYLL-----PEELPQEA 192

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            +  A+ LA  E    +   A  FY  ++      +TP L N       L+SCF+ ++ D
Sbjct: 193 LLSCALLLATVESPENRLPWAKRFYEAIARRKVSLATPILANLRVPGGSLTSCFILSIDD 252

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  IF  +   A ++K  GG+G + + +R  G+ + G N  S G+IP++K+ NDTA+AV
Sbjct: 253 NLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGIIPWIKLLNDTAIAV 312

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     + D FM+RV     
Sbjct: 313 NQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKEQ 372

Query: 499 WTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P EV +       +L+G++FE AY   E + DR EI ++++++A  L++ ++   
Sbjct: 373 WTLVDPYEVREKLGIELAELWGEKFEEAYRLIEAEIDR-EITLYKRVNARELFKTIMRSQ 431

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFA 612
            ETG P++ FKD  N  +P +HVG +   NLCTE   N +  +E   CNL S+NL     
Sbjct: 432 VETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESFSNVTPGKEAHCCNLVSLNLANI-- 489

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               + D+L    + AVR+LDN IDI     + AK  N  +R IG+G MG    L    +
Sbjct: 490 ----EEDELNYLCKIAVRILDNTIDITNPPFDDAKSHNDRYRTIGVGCMGLADWLAKQGL 545

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y +   +       E + +     S+ELA+ER  Y +F GS W +G+       + ++ 
Sbjct: 546 TYENIAEI---SNIFEEVGYWCTQTSMELAKERSPYDAFAGSDWSKGLL------IGSKP 596

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            +    N   +  W +L + +KT G+RNS+  AIAP  + + + G + SI P Y   +  
Sbjct: 597 VNWFVENANKKERWIQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYD 656

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G    +    + +      W                            +     ++
Sbjct: 657 KWAKGTVP-IAPPFIKD----SFW---------------------------FYHENKTLE 684

Query: 853 PMWLIESASRRQKWIDQAQSL----NLYL-----DEP----SGKKLDFIYRQAWLMGLKT 899
              ++++ S  Q+WID   S+    NL       +EP    + K +      AW  G K 
Sbjct: 685 QQKVVKAVSTIQQWIDTGISMELLFNLNQGVYFPNEPERCLTAKDIFETLLLAWKEGCKA 744

Query: 900 TYYLRS 905
            YY+R+
Sbjct: 745 IYYVRT 750


>gi|288554978|ref|YP_003426913.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
 gi|288546138|gb|ADC50021.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
          Length = 723

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 241/738 (32%), Positives = 361/738 (48%), Gaps = 87/738 (11%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   L  +EP++  V A   +  LR ++      +P+          +PE+    IE
Sbjct: 34  ASHALNELSVEEPHWTYVAAACYINHLREQIAEQRGVEPKVL-----SASFPEFLKAQIE 88

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320
           +G+    L       +L  LA  L+  RD  F Y+G++ L DRY     N   +E+PQ  
Sbjct: 89  KGIYDGRLDS-YSTDELYELALTLEPARDQKFTYIGIKTLADRYLAKDFNDQIVELPQER 147

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           +M +AM L  +E    + +   E Y  LS  +   +TPT+ N+G    QLSSCF+ TV D
Sbjct: 148 WMVIAMTLMSEENRGSRLELVKEAYWALSHLYMTVATPTMSNAGKVGGQLSSCFIDTVED 207

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  IF +  + A ++K  GGLG     +R  G+ I G    S GVIP++K  N+ AV+V
Sbjct: 208 DLRSIFDSCTDAATVSKNGGGLGMYLGKIRARGSSIRGFKNVSSGVIPWMKQLNNVAVSV 267

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+R+GA+  YL+ WH D+  FLD + N GD+R+RTHD+ TA  +PDLFM+ V +   
Sbjct: 268 DQLGQRQGAIAVYLDVWHKDIFAFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVEKRDT 327

Query: 499 WTLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           W LF P EV        ++F           + YE+ A   E+    +I A+ + ++++ 
Sbjct: 328 WYLFDPHEVRVKMGFSLEDFYDEKKGDGEFRKRYEQCAANDELSRT-EIPAIEVMKRIML 386

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------ 593
              ETG P++ ++D  N  +P +H G+++ SNLCTEI  N S                  
Sbjct: 387 SQLETGSPFMFYRDTANRLNPNKHKGMIYGSNLCTEIMQNMSATTVVEETLEDDTISIKK 446

Query: 594 -SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +  VCNL S++L   F++     D +   ++  VR+LDNVID N   +++A+K+N  
Sbjct: 447 QPGDYVVCNLSSLSLAQVFSD-----DVVERVVKIQVRMLDNVIDQNSIGVKQAEKTNKM 501

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +RAIGLG  G+   L    I + S E+V   +   E I+  AI AS ELA E+GAY  ++
Sbjct: 502 YRAIGLGTYGWHHHLAKRGIAWESEESVWEVERVYERINQAAIKASAELAAEKGAYPHYE 561

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS W  G F  +                     WDE++  +   GMRN   MA+AP AT 
Sbjct: 562 GSDWQTGEFFSE--------------RGYEGAEWDEIRSVISKHGMRNGYVMAVAPNATT 607

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I G + SIDP +Q  YV+   +    VV      +L  R  W                
Sbjct: 608 SLIAGSTASIDPLFQKYYVEEKKNYRIPVVAP----DLDARTTW---------------- 647

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
                       +  A  +D  W I   + RQ+ +DQ  S NLY+ +    K+L  ++  
Sbjct: 648 -----------YYKPAHLVDQTWSIRQNAARQRHVDQGISFNLYVPNNVKAKELLDLHLL 696

Query: 892 AWLMGLKTTYYLRSRSAT 909
           AW  GLKTTYY+RS S +
Sbjct: 697 AWKEGLKTTYYVRSTSLS 714


>gi|332185596|ref|ZP_08387344.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           sp. S17]
 gi|332014574|gb|EGI56631.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           sp. S17]
          Length = 638

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/679 (30%), Positives = 302/679 (44%), Gaps = 95/679 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G + L DRY L       E  Q  F+RVA   A         A   Y+
Sbjct: 46  VDHARDARLTDFGKETLNDRYLL-----PGESYQDLFVRVASAYADNAE----HAQRLYD 96

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SC+L +VPD L GI     EN  LA   GG+G  W
Sbjct: 97  YISKLWFMPATPVLSNGGTGRGLPISCYLNSVPDSLDGIVTTWNENVWLASRGGGIGTYW 156

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 157 GQVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLE 215

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R+  +++    IPD FM+ V   A W L SP                    
Sbjct: 216 IRKPSGDFNRKALNLHHGVLIPDAFMEAVRDGAEWHLKSPKT------------------ 257

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                     +V   + A AL++K++     TG P+I F D  N   P+ H      V +
Sbjct: 258 ---------GEVRATVDARALFQKLVETRLATGEPYIVFADHVNKNMPKHHRELGLKVST 308

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EITL +  +           L +       ++      I   +R LDNV    ID
Sbjct: 309 SNLCSEITLPTGLDHKGNDRTAVCCLSSLNLETWDEWKDDKQFIEDVMRFLDNVLQDYID 368

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +E+A  S    R++GLG+MGF S L    +P+    A        + I+     A
Sbjct: 369 RHEPGMERAAYSAARERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRMFKHINAQVNQA 428

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ LA ERG                 D+  +    R                        
Sbjct: 429 SMTLAAERGPCP--------------DAADVGVMER------------------------ 450

Query: 758 MRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
              S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++   
Sbjct: 451 --FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLIEKSKN 508

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +A+ + +  H GS+ +++ +  + K    T+FEID  WL+E A  R  +IDQAQSLNL+
Sbjct: 509 SDAVWNSILEHGGSVQHLDFLSPEEKDTFKTSFEIDQRWLLELAGDRTPYIDQAQSLNLF 568

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +  +     L  ++ +AW +G+K+ YYLRS+S             G   +  V   N+ +
Sbjct: 569 IPADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA---------GFAGSGGVEADNTIS 619

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                    T   EC  CQ
Sbjct: 620 APKFEIGETTDYDECLACQ 638


>gi|305663588|ref|YP_003859876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ignisphaera aggregans DSM 17230]
 gi|304378157|gb|ADM27996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ignisphaera aggregans DSM 17230]
          Length = 877

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 203/880 (23%), Positives = 370/880 (42%), Gaps = 129/880 (14%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM---YDGLSE 195
             I   +K++  DG++  FN +++ + + +AC  L D +  + + E           +S 
Sbjct: 13  RSIISTVKVIKRDGSIEPFNLEKVFISISKACKKLCDRNEILSIIEILVGEIKERSEIST 72

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            ++   +     +     P + +V  R+ L K+ ++V                       
Sbjct: 73  LEISDRIERIMISKAISNPKWFEVVKRYELGKIYKDVYGKRSDV---------------- 116

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSR 313
                              +FD           +D    +  ++IL  RY +     G  
Sbjct: 117 -------------------EFD----------PKDLKLTFSAIKILGSRYLIKDPETGRF 147

Query: 314 IEMPQAFFMRVAMGLALKETEKE---------------KRAVEFYNLLSSFHFMCSTPTL 358
           IE PQ  F RV+  +A +E +                      FY LLS   F+ ++PTL
Sbjct: 148 IETPQMLFRRVSRAIATQEYKYCIQQNNNEDLCKDRVKYWEELFYELLSDQRFLPNSPTL 207

Query: 359 FNSGTRHPQLSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
            N+GT+   LS+CF+  V D +      GI+ A++  A++ +  GG G D++ +R  G  
Sbjct: 208 MNAGTKLGILSACFVIPVRDSIVTPDGEGIYDAVRAQAIIFQQGGGTGFDFSELRPEGDI 267

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  T G + G + F+++ +     + QGGKR+GA    L  WH D+E+F+D +     D 
Sbjct: 268 VSTTGGIASGPLSFMRMFDVNTEVIKQGGKRRGANMGVLHVWHADIEKFIDAKSGQLKDV 327

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENY 525
               + N +    D F++ V       L +P + +               +     YE++
Sbjct: 328 N-LQNFNISVGAYDYFIEAVMNGGSIPLINPRKTNLRRDLGNNSKFYAITRARHYLYEDW 386

Query: 526 ERQADRGEIK----------------------------VFRKISAVALWRKMLTMLFETG 557
            ++    E++                            +   ++A  L+ K++   +++G
Sbjct: 387 VQEVIINELESKGGSIWLDETILLTIDEAMIIAQEEKAIVGYVNAKKLFEKIVRNAWDSG 446

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P + F D  N R P  ++G ++++N C E  L         CNLGSINL  +   +++ 
Sbjct: 447 DPGLLFIDTINRRHPVWYLGKINATNPCGEQPLLP----WESCNLGSINLEKYVEYDEYG 502

Query: 618 -----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                + +LA  IR  VR +DN+ID+    + + +++    R IG+G+MG+   L  L I
Sbjct: 503 KPRIAWQRLAEDIRVIVRFMDNIIDVAKWPLPQLEEAVKRTRKIGIGVMGWHHMLIKLGI 562

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--- 729
           PY S +A+ +A    E+I ++A  AS+ELA+ERGA+ ++    +         +  L   
Sbjct: 563 PYDSADALYLAYYLAEWIEYNAALASIELARERGAFPAYDPDKYRPTWLSAKPLEELLAI 622

Query: 730 ----AEVRDELAMNRTSR--LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
               A+    +    +SR  + W+ ++   +  G+RN+   +IAPT TI+ I   S SI+
Sbjct: 623 ASIDAKPSKFILELLSSRPQIDWNTVEVLRRKYGIRNAALTSIAPTGTISIIANASPSIE 682

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P +   + +    G F  V+   +  L++ +L    +I ++    GSI +I  +P  +K 
Sbjct: 683 PIFAVAFERHVTVGKFIEVDPLFLEYLRKYELDSPELIEEIARR-GSISDIPYMPRTIKL 741

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
           +   A +IDP W +   +  Q+W+    S  + L  E +   +  +Y  AW++G K    
Sbjct: 742 LFKGALDIDPKWHVLHQAVWQQWVCAGVSKTVNLRFEATVDDVRNVYLLAWMLGCKGITV 801

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            R +S    ++    GV      VP             P 
Sbjct: 802 YRDKSK--AQQVIYVGVKMSQQQVPKERTEKIQLEEKSPQ 839



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 18/98 (18%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  V+VIKR+G +  F+  K+  +I KA          + +  ++ I ++ E  V  + +
Sbjct: 16  ISTVKVIKRDGSIEPFNLEKVFISISKA---------CKKLCDRNEILSIIEILVGEIKE 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQS-----GHHKITREY 118
            ++    +   +I D++E  ++          ++ + Y
Sbjct: 67  RSE----ISTLEISDRIERIMISKAISNPKWFEVVKRY 100


>gi|209523558|ref|ZP_03272112.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           maxima CS-328]
 gi|209495963|gb|EDZ96264.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           maxima CS-328]
          Length = 752

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 213/790 (26%), Positives = 363/790 (45%), Gaps = 84/790 (10%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           +D P   +++++  DG+L   +  R+  +V  AC GL   +   + +     + +G++  
Sbjct: 8   TDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGLDA-NPITLEAGLTTRLKNGVTTR 66

Query: 197 DLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +++  LI  +  L    +P++  V  R  +  L ++ L +   + +          Y + 
Sbjct: 67  EIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVSRGYQYED---------YCQT 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               ++ G     L        L    + +  + D  ++Y G  +L  RY L       E
Sbjct: 118 VTSKVKSGQYDARLL-KYTPDQLREAGSWINPQWDKDYDYAGAVLLTKRYLL-----PEE 171

Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +PQ   +  A+ LA+ E   ++   A +FY  ++      +TP L N    +  LSSCF+
Sbjct: 172 LPQEALLSCALLLAVVEAPEKRMFWAQKFYQAIALRQISLATPILANLRIPNGSLSSCFI 231

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D+L  IF  +++ A ++K  GG+G + + +R  G+ + G    S GVIP++K+ ND
Sbjct: 232 IGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWIKLLND 291

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TA+AVNQGG+R GA+   L+ WH+D+ EFL+++   GD RR+ +D+     I D FM+RV
Sbjct: 292 TAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISDEFMRRV 351

Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
                WTL  P EV      +L +L+G+EFE AY+  E  +   E+K++++I+A  L++ 
Sbjct: 352 RNCENWTLIDPYEVRVKLGIELSELWGEEFESAYQKIEA-SLDYELKLYKRINARELFKN 410

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++    ETG P++ FKD  N  +P QH G +   NLC E   N    E     L     L
Sbjct: 411 IMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----LAHTCNL 465

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                +  D+  L +    AVR+LDN I+I     + +   N  +R IG+G+MG    L 
Sbjct: 466 NSLNLSNLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQRYRTIGVGVMGLADWLA 525

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                Y+  + +       E I F+    S+EL++ERGAY +F GS W QG        +
Sbjct: 526 KRRFSYSHLQEI---SNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL------I 576

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
            A+  D    +   +  W EL + ++  G+RNS+  AIAP  + + + G + S+ P Y  
Sbjct: 577 GAKPVDWFLTHADDKHRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASVLPCYSR 636

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            +      G    +    + +    + W                     P++      T 
Sbjct: 637 FFYDKWAKGTVP-IAPPFIKD----NFW-------------------FYPEN-----KT- 666

Query: 849 FEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLM 895
             +D   ++++ +  Q+WID   S+    NL       E        K +      AW  
Sbjct: 667 --LDQQIVVKAVAAMQQWIDTGISMELMFNLNQGVYFPEEPARSLKAKDIFDTLMAAWEQ 724

Query: 896 GLKTTYYLRS 905
           G K  YY+R+
Sbjct: 725 GCKAIYYVRT 734


>gi|149185042|ref|ZP_01863359.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter
           sp. SD-21]
 gi|148831153|gb|EDL49587.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter
           sp. SD-21]
          Length = 679

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 201/678 (29%), Positives = 300/678 (44%), Gaps = 94/678 (13%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ 
Sbjct: 87  DESRDDLLTEFGKETLEDRYLL-----PGESYQDLFARVADAFA----DDQDHAQRLYDY 137

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 138 ISRLWFMPATPVLSNGGTQRGLPISCYLNSVSDSLDGIVNTWNENVWLASKGGGIGTYWG 197

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 198 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDVTHPEIEEFLEI 256

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 257 RKPSGDFNRKALNLHHGVLVTDAFMEAVRNGEEFDLLSPKD------------------- 297

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V + + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 298 --------GSVRKTVDARSLFQKLVETRLATGEPYIVFSDTVNRMMPKHHRDLGLKVSTS 349

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC EITL +  +           L +       +++     I   +R LDNV    ID 
Sbjct: 350 NLCAEITLPTGIDHLGNDRTAVCCLSSLNIEKWDEWNTDKQFIEDIMRFLDNVLQNYIDR 409

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++GLG+MGF S L    I + SP A     +  + I   A  AS
Sbjct: 410 APDEMARAKYSAMRERSVGLGVMGFHSFLQQKGIGFESPMAKVWNLKMFKHIQSKASEAS 469

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LAQERGA    +     +                                        
Sbjct: 470 MVLAQERGACPDAEDMGAME---------------------------------------- 489

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++    
Sbjct: 490 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKSKNS 549

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            A+ + +    GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL++
Sbjct: 550 TAIWNSILEKGGSVQHLDFLTPEEKATFKTSFEIDQRWLLEFAADRAPYIDQAQSLNLFI 609

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ QAW  G+K+ YYLRS+S                        +++ +
Sbjct: 610 PADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA--------GFAGGVEADNTADAAKY 661

Query: 937 SLGIPSSCTSDTECEVCQ 954
            L   +  T   EC  CQ
Sbjct: 662 ELAAGAEQTDYEECLACQ 679


>gi|299822181|ref|ZP_07054067.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi
           DSM 20601]
 gi|299815710|gb|EFI82948.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi
           DSM 20601]
          Length = 758

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 245/795 (30%), Positives = 373/795 (46%), Gaps = 86/795 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  + +       +  +    + +  +   +  +  DL   L
Sbjct: 4   YIVKDGGNRKLEFDHARLDRYLNKVHEEFPKLEIEDYKRKIFNFIEKKEDYAADDLVDYL 63

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +   P +    AR  L KL ++     +         +    Y        E
Sbjct: 64  IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYIGLQESLGE 118

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    +L+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 119 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 178

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++ +   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 179 WLTIALYLMQNEGKEKRMELVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 238

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 239 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 298

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 299 DQLGQRKGAISVYLDVFHKDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDVFMEAVERRGE 358

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV D    Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 359 WYLFDPHEVHDKKGWYLQDFYDEKKGEGTFREKYDELVADETISKKIVKAIDIAKRIMLS 418

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G ++SSNLCTEI  N S+                  
Sbjct: 419 QLETGNPFMFYRDEVNRMNPNKHEGRIYSSNLCTEIMQNMSATRVIHEIISGDQIVITKK 478

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL SINL         D   L+  I   VR+LDNVID+N   + +A  +N  +
Sbjct: 479 AGDFVVCNLSSINLGRA--VLAEDESTLSRLIDVEVRMLDNVIDLNELPVPQATITNKKY 536

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 537 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEKINYLAIQASNKLAQEKGAYKVFKG 596

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +       S   W EL  +V   GMRN+  MA+AP  + A
Sbjct: 597 SDWETG--------------EYFERRDYSTEAWKELADKVAASGMRNAYLMAVAPNMSTA 642

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+                               
Sbjct: 643 QIAGSTASIDPIYNAFYYEEKKDYRRPVIAP----------------------------- 673

Query: 834 IERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
              +  +    +   A+++D    +   +RRQ+ +DQ+ S NLY+       KL  ++  
Sbjct: 674 --DLSLNTYPYYEKGAYKVDQFASVRQNARRQRHVDQSLSFNLYVPSGIKASKLLELHMT 731

Query: 892 AWLMGLKTTYYLRSR 906
           AW  GLKTTYY+RS 
Sbjct: 732 AWREGLKTTYYVRSN 746


>gi|85710101|ref|ZP_01041166.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           sp. NAP1]
 gi|85688811|gb|EAQ28815.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           sp. NAP1]
          Length = 669

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/689 (29%), Positives = 304/689 (44%), Gaps = 96/689 (13%)

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334
             +       +   RD      G + L DRY L       E  Q  F RVA   A    +
Sbjct: 68  KVNDRRFDVQIDESRDANLTEFGKETLTDRYLL-----PGEKYQDLFARVADAYA----D 118

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            ++ A   Y+ +S+  FM +TP L N GT      SC+L +V D L GI G   EN  LA
Sbjct: 119 DQEHAQRLYDYISNLWFMPATPVLSNGGTSRGLPISCYLNSVSDSLDGIVGTWNENVWLA 178

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              GG+G  W  VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+ 
Sbjct: 179 SKGGGIGTYWGNVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDV 237

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H ++EEFL++RK +GD  R+  +++    + D FM+ V   A + L SP          
Sbjct: 238 SHPEIEEFLEIRKPSGDFNRKALNLHHGVLLTDEFMEAVRDGADFDLKSPKT-------- 289

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                               +V   ++A +L++K++     TG P+I F D  N   P+ 
Sbjct: 290 -------------------GEVRGTVNARSLFQKLVECRLATGEPYIVFNDTVNRMMPKH 330

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           H      V +SNLC+EITL +  +           L +       ++      I   +R 
Sbjct: 331 HRDLGLKVSTSNLCSEITLPTGIDHLGNDRTAVCCLSSLNLEKWDEWSTDKQFIEDVMRF 390

Query: 632 LDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           LDNV    ID     + +A+ S    R++GLG+MGF S L    + + S  A  +  +  
Sbjct: 391 LDNVLQDYIDRAPDEMARARYSAERERSVGLGVMGFHSFLQQKGLGFESAMAKALNLKMF 450

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           + I   A  AS+ LAQERG                 D+  + A  R              
Sbjct: 451 KHIQAKASEASMLLAQERGPCP--------------DAAEMGAMER-------------- 482

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
                        S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L
Sbjct: 483 ------------FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYL 530

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
              L ++      + + +    GS+ +++ + D+ K    T+FEID  WL+E A+ R  +
Sbjct: 531 EKLLDKKSKNSTNVWNSILERGGSVQHLDFLTDEEKASFKTSFEIDQRWLLEFAADRAPY 590

Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQAQSLNL++  +     L  ++ QAW  G+K+ YYLRS+S                  
Sbjct: 591 IDQAQSLNLFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA----------GFAG 640

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               D  +      + +  T   EC  CQ
Sbjct: 641 GVEADNTADAAKFELAAEQTDYEECLSCQ 669


>gi|330994650|ref|ZP_08318573.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter sp. SXCC-1]
 gi|329758291|gb|EGG74812.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter sp. SXCC-1]
          Length = 599

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 204/680 (30%), Positives = 299/680 (43%), Gaps = 91/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G   L +RY L       E  Q  F RVA             A   Y+
Sbjct: 1   MDHSRDALLTAFGKATLDNRYLL-----PGESYQDLFGRVASYYGA----DAAHAQRLYD 51

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 52  YISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 111

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 112 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 170

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ TG D  R+  +++    +PD FM+ V  +  W L SP +                 
Sbjct: 171 LRRPTGGDPNRKALNLHHGVLVPDAFMRAVADDDEWALLSPKDN---------------- 214

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V RK+SA ALW ++LT   E G P+I F D  N   P+ H      V 
Sbjct: 215 -----------TVIRKVSARALWIRILTARMEQGEPYIIFSDHVNNARPEHHKLAGLEVK 263

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC EITL +  ++          L +       ++      I   +  LDNV    I
Sbjct: 264 TSNLCAEITLPTGMDQHGRERTAVCCLSSLNLETWEEWKDNPQFIEDVMLFLDNVLQDFI 323

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +E+A+ +    R++GLG+MGF S L   ++P+ S  A        + I   A +
Sbjct: 324 DRAPDDMERARYAAMRERSVGLGVMGFHSFLQANNVPFESVVAKGWNRRIFKHIRAQADA 383

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ERG                                        D     V   
Sbjct: 384 ASRKLAEERGPCP-------------------------------------DAADYGVME- 405

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L +R  
Sbjct: 406 --RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLLTERGQ 463

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
               + S +  + GS+ +++ +    K +  TAFE+D  W+IE A+ R  ++ QAQS+N+
Sbjct: 464 NTSEVWSSITLNKGSVQHLDFLTRQEKDVFKTAFELDQRWVIEHAADRAPYVCQAQSINI 523

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  G+K+ YY RS S    +       DG+            
Sbjct: 524 FLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSIQRAD----AVSDGQEKRDLSHREGED 579

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                 P++ T   EC  CQ
Sbjct: 580 AAGTAGPATTTDYEECLACQ 599


>gi|83859673|ref|ZP_00953193.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852032|gb|EAP89886.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 626

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 198/678 (29%), Positives = 303/678 (44%), Gaps = 99/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RV+   A    +  + A   Y+ 
Sbjct: 39  DPSRDALLTDFGKKTLVDRYLL-----PGESYQDMFARVSTAYA----DDLEHAQRLYDY 89

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S+  FM +TP L N G       SCFL +V D L  I     EN  LA   GG+G  W 
Sbjct: 90  MSNLWFMPATPVLSNGGADRGLPISCFLNSVDDSLGDIVSTWTENVWLASNGGGIGTYWG 149

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +   NG++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 150 NVRSIGEKVGQ-NGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEI 208

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    + D FM+ V ++  + L SP                     
Sbjct: 209 RKPSGDFNRKSLNLHHGLNVSDAFMEAVAKDEEFELISPRS------------------- 249

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                    +V + ++A  LW+K+L +  +TG P+I F D  N   P         V  S
Sbjct: 250 --------GEVVKTVNARKLWQKILEVRLQTGEPYILFSDTVNNNLPAHQRKLGLKVRQS 301

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +  A    ++      +    R LDN+    I+ 
Sbjct: 302 NLCSEITLPTGVDHLGNDRTAVCCLSSLNAEKFLEWKDDERFLEDIFRFLDNILQDFIER 361

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +E+AK S    R++GLGLMGF S L  +++P+ S  A        + I   A  AS
Sbjct: 362 APDEMERAKYSAARERSVGLGLMGFHSFLQSMNVPFESAMAQSWNKRMFQHIRQGADKAS 421

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V+LA+ERGA                D+     + R                         
Sbjct: 422 VKLAEERGACP--------------DAADNGVKAR------------------------- 442

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
             S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG FTV N +L   L+++    
Sbjct: 443 -FSHKLAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPYLEKILEEKGKNT 501

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            A+ S +  H+GS+ +++ + +  K +  TAFE+D  W+IE A+ R  +I QAQSLNL+L
Sbjct: 502 PAVWSSILEHEGSVQHLDCLDELEKDVFKTAFELDQRWVIEHAADRSPYICQAQSLNLFL 561

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             + +   L  ++  AW  G+K+ YY RS+S                 A           
Sbjct: 562 PGDVNKWDLHMLHWSAWEKGVKSLYYCRSKSVQRA-------------AYAGAGEKDEMS 608

Query: 937 SLGIPSSCTSDTECEVCQ 954
                ++     EC  CQ
Sbjct: 609 KSLSDAAPKDYDECLACQ 626


>gi|260589756|ref|ZP_05855669.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia
           hansenii DSM 20583]
 gi|260539996|gb|EEX20565.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia
           hansenii DSM 20583]
          Length = 733

 Score =  425 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 234/751 (31%), Positives = 368/751 (49%), Gaps = 94/751 (12%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + ++E D+  AL  ++  L  E EP +  + ARFL  K  + + T + K+  ++ + ++Q
Sbjct: 32  ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
            L         +EG+    + E+  + +++   + +K ER+  F Y GL +L +RY +  
Sbjct: 92  YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143

Query: 310 NGSR-IEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +    +E PQ  +M +A+ LA+KE + +     +FY++LS      +TPTL N+   + Q
Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +
Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PD
Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323

Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           LF K   ++    W L  P E+       L D YG+E+E  Y          E    R I
Sbjct: 324 LFWKMAKEDLEQKWHLMCPHEIFMVKGWRLEDCYGEEWEEKYRQCIED----ERIKKRSI 379

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596
           +   + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N    E    
Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439

Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                                VCNL S++L         D   +   + TAVR LDNVID
Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSLGHLSVE---DKKYMKDIVGTAVRALDNVID 496

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N + +  A+ +N  +R IGLG+ G+   L   +I + S E ++ ADE  E I++  + A
Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S +LA+E+G Y  F+GS W  G                          W EL+ +V+  G
Sbjct: 557 SADLAEEKGTYQFFEGSDWHTG--------------AYFEKRNYVSKEWKELEYKVRNTG 602

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN   +A APT++ + + G +  +DP  +  +++         V               
Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDPVMKKFFMEEKKGSMLPRVAP------------- 649

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                              +  D    +  A  ID  + +++   RQ+ IDQAQSLNLY+
Sbjct: 650 ------------------DLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSLNLYI 691

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +  + ++L  +Y +AW  G+KT YY+RS+S
Sbjct: 692 TNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722


>gi|220933052|ref|YP_002509960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halothermothrix orenii H 168]
 gi|219994362|gb|ACL70965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halothermothrix orenii H 168]
          Length = 766

 Score =  425 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 183/656 (27%), Positives = 306/656 (46%), Gaps = 84/656 (12%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYN 344
           D       +++L  RY     +G  IE P+  F RVA  +A        + E+    F+N
Sbjct: 3   DIKLTRNAIKVLKARYLKRDASGELIETPEEMFKRVANNIASANEKYGEDPERDKEAFFN 62

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++S  F+ ++PTL N+     QLS+CF+  + D + GIF AL+  A++ K  GG G  +
Sbjct: 63  LMASLDFLPNSPTLMNADNDLQQLSACFVLPIEDSMDGIFDALKYTALIQKSGGGTGFSF 122

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G + G I F+++ +     V QGGKR+GA    L   H D+ EF+ 
Sbjct: 123 SRLRPKSDIVKTTGGVASGPISFMEIFDAATNTVKQGGKRRGANMGILRVDHPDIMEFIT 182

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     D  R ++ N +  + D FM+ V ++  + L +P                    
Sbjct: 183 AKA----DENRLNNFNISVAVTDEFMEAVKKDEEYDLVNPRS------------------ 220

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +V  ++ A  ++ K++ M  + G P I F D  N  +P  H+G + S+N 
Sbjct: 221 ---------GQVVGQLRAREVFNKIVEMAHKNGEPGIIFIDEINRHNPTPHLGEIESTNP 271

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINC 640
           C E  L         CNLGSINL     N     + D++KL +T+RTA R LDNVID+N 
Sbjct: 272 CGEQPLLPY----EACNLGSINLSHMVKNEGDKPEVDFEKLENTVRTATRFLDNVIDMNR 327

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + +E+ K+  +++R IGLG+MG+   L  L IPY S  AV +A++ M+FI+  +   S +
Sbjct: 328 YPLEQIKEMVYSNRKIGLGVMGWSDLLIRLGIPYNSDRAVNLAEKVMKFINEISHDESHK 387

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           +A++RG++ + +GS++D+                                       MRN
Sbjct: 388 IARKRGSFPNIEGSIYDKS--------------------------------------MRN 409

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           +    IAPT +I+ I G S  I+P +   Y +  +      V+ +     ++R  + E +
Sbjct: 410 ATTTTIAPTGSISIIAGCSSGIEPLFAINYERHVLDDTLIEVHPYFEKIARERGFYSEEL 469

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
           ++ +    GSI  +  IP+D++KI  TA +I+P W I+  +  QKW+D A S  +    E
Sbjct: 470 MAKVAER-GSIQGMSEIPEDVQKIFVTAHDIEPEWHIKMQAAFQKWVDNAVSKTVNFRHE 528

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
            + + +  +Y  A+ +  K     R  S +    +T +      N          T
Sbjct: 529 ATKEDVARVYTLAYDLKCKGVTIYRDGSRSEQVLATGRSKTYGNNGFKKRPRPKIT 584


>gi|15921522|ref|NP_377191.1| ribonucleoside-diphosphate reductase large subunit [Sulfolobus
           tokodaii str. 7]
 gi|15622308|dbj|BAB66300.1| 831aa long hypothetical ribonucleoside-diphosphate reductase large
           subunit [Sulfolobus tokodaii str. 7]
          Length = 831

 Score =  425 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 209/835 (25%), Positives = 365/835 (43%), Gaps = 114/835 (13%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
             +        KLK++   G +  F S ++   +      + D     +      N  D 
Sbjct: 2   QKADITILSLSKLKVLKRSGKVEEFKSDKIFSKLGIIPEDVMDGILNDIAQNAKDNAIDT 61

Query: 193 LSESDLETALIFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            + +D+        R LIE     P    +  +++L ++   V                 
Sbjct: 62  RTIADIVE------RNLIEHSLDHPELMDLAKKYVLARIYNHVFGK-------------- 101

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
                                 +   FD          ERD    Y  L++L  RY L  
Sbjct: 102 ---------------------GNWKGFD----------ERDLLLTYNALKVLEARYLLKD 130

Query: 310 NG--SRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFN 360
                 IE PQ  F RVA  LA  E +        ++   +FY ++S   F+ +TPTL N
Sbjct: 131 PNTLRYIETPQMMFRRVAKHLANVERQYGRSESEVKQLEEKFYKIMSELKFLPNTPTLMN 190

Query: 361 SGTRHPQLSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           SGTR   LS+CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  + 
Sbjct: 191 SGTRLGILSACFVIPVRDSMITPNGEGIYDALRAMAVVHQQGGGTGFDFSELRPKGDIVA 250

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T G + G + F+++ + +   V QGGKR+GA    +  WH D+EEF+  +     D  +
Sbjct: 251 STAGVASGPVSFMRIFDVSTDVVKQGGKRRGANMGVMHVWHPDIEEFIKSKTGQLKD-TQ 309

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-------- 527
             + N +  + D FM+ V +     L +P +       Y       Y N E         
Sbjct: 310 LQNFNISVGVYDYFMQAVERGDVVPLINPRKTKIADWDYYMSKARGYMNEEWIQEVILSE 369

Query: 528 ----------------------QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                                      E  + + ++A  L+ +++   +++G P + F D
Sbjct: 370 LEEKGGTVDLAESKIITIDEALVIAEKENAITQWVNARNLFDEIVKGAWDSGDPGLLFID 429

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N R P  ++G ++++N C E  L         CNLGSINL     + + D+D LA TI
Sbjct: 430 TINRRHPVWYLGKINATNPCGEEPLLP----WESCNLGSINLEKFVVDGKIDWDGLAETI 485

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R AVR+LDNVID N + +++ +++    R +GLG+MG    L  L IPY S +AV ++ +
Sbjct: 486 RYAVRLLDNVIDANRYPLKQIEEATKKTRKVGLGVMGLARMLIKLGIPYDSVDAVYLSYQ 545

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWD---------QGVFPIDSIGLLAEVRDEL 736
             +FI +HA   S+E+A+E+G++ ++   L+            +  I  I        + 
Sbjct: 546 LAKFIYYHAFKESIEIAKEKGSFPAYDAKLYKDIWESAKDFYEILEIMGIKDKPSDYVKK 605

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             +   +L +D+LK+     G+RN+  +++APT TI+ I G S SI+P +   ++++   
Sbjct: 606 LTSIVDKLDFDKLKEDRIKYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAV 665

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G F  ++   ++ L++ +L +  ++  +    G IG+   +P  ++K+  TA E+ P + 
Sbjct: 666 GKFMEIDPLFLDYLRKYELDNPEVVKKIAET-GMIGDNPFMPKSMRKVFRTAHEVSPEYH 724

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +   +  Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S + 
Sbjct: 725 LLHQAAWQQWNDSGTSKTINLRSEEPPETVERVYMLAWKLGIKGVTVYRDKSKSQ 779



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 24/103 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  ++V+KR+G V  F   KI                    ++  I +++ +  +  + 
Sbjct: 10  SLSKLKVLKRSGKVEEFKSDKIF------------------SKLGIIPEDVMDGILNDIA 51

Query: 85  QHNKSALIVHIEDIQDQVECSLMQS-----GHHKITREYVLYR 122
           Q+ K    +    I D VE +L++          + ++YVL R
Sbjct: 52  QNAKDNA-IDTRTIADIVERNLIEHSLDHPELMDLAKKYVLAR 93


>gi|258542156|ref|YP_003187589.1| ribonucleotide-diphosphate reductase subunit alpha [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633234|dbj|BAH99209.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636293|dbj|BAI02262.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639346|dbj|BAI05308.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642402|dbj|BAI08357.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645457|dbj|BAI11405.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648510|dbj|BAI14451.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651563|dbj|BAI17497.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654554|dbj|BAI20481.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 643

 Score =  425 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 203/682 (29%), Positives = 300/682 (43%), Gaps = 96/682 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L +RY L   G      Q  F RVA             A   Y+
Sbjct: 46  VDRSRDALLTPFGKATLDNRYLLPDEGY-----QDLFGRVASYYGA----DAAHAQRIYD 96

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 97  YISKHWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYW 156

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 157 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 215

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 216 LRRPTGGDPNRKALNLHHGVLVSDAFMRAVESDDEWALISPKD----------------- 258

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V RKISA  LW ++LT   E G P+I + D  N   P+ H      V 
Sbjct: 259 ----------GSVIRKISARGLWIRILTARMEQGEPYIVYSDHVNNARPEHHKLAGLEVK 308

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC+EITL +  +           L +        +      I   +  LDNV    I
Sbjct: 309 TSNLCSEITLPTGIDHHGKARTAVCCLSSLNLETWDQWKDNPQFIEDVMLFLDNVLQDFI 368

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK +    R++GLG+MGF S L   ++P+ S  A     +  + I   A +
Sbjct: 369 DRAPEDMHRAKYAAMRERSVGLGVMGFHSFLQSRNVPFESVVAKVWNRKIFKHIREQADA 428

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ RG     +                                            
Sbjct: 429 ASRKLAELRGPCPDAE------------------------------------------EY 446

Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G+    SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L+++
Sbjct: 447 GIMERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQKLLEEK 506

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                 + S +    GS+ +++ +    K +  TAFE+D  W++E A+ RQ +I QAQS+
Sbjct: 507 GQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRQPFICQAQSV 566

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L  +   + L  I+  AW  GLK+ YY RS S    +  T+  V  K + + V    
Sbjct: 567 NLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLSIQRAD--TVSNVLAKNDVMNVDSSQ 624

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +S+ S           EC  CQ
Sbjct: 625 ASSGSASSG---NDYEECLACQ 643


>gi|331083186|ref|ZP_08332302.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330404575|gb|EGG84115.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 733

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 234/751 (31%), Positives = 368/751 (49%), Gaps = 94/751 (12%)

Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + ++E D+  AL  ++  L  E EP +  + ARFL  K  + + T + K+  ++ + ++Q
Sbjct: 32  ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
            L         +EG+    + E+  + +++   + +K ER+  F Y GL +L +RY +  
Sbjct: 92  YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143

Query: 310 NGSR-IEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +    +E PQ  +M +A+ LA+KE + +     +FY++LS      +TPTL N+   + Q
Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           LSSCF+  VPD L GI+ ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI +
Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ NDTAVAV+Q G R+GA   YL+ WH D+ EFL LR N GDDR + HD+  A   PD
Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323

Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           LF K   ++    W L  P E+       L D YG+E+E  Y          E    R I
Sbjct: 324 LFWKMAKEDLEQKWYLMCPHEIFMVKGWRLEDCYGEEWEEKYRQCIED----ERIKKRSI 379

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596
           +   + R +L    ETG P+   +D  N  +P  H G+++ SNLCTEI  N    E    
Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439

Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
                                VCNL S++L         D   +   + TAVR LDNVID
Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSLGHLSVE---DKKYMKDIVGTAVRALDNVID 496

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N + +  A+ +N  +R IGLG+ G+   L   +I + S E ++ ADE  E I++  + A
Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S +LA+E+G Y  F+GS W  G                          W EL+ +V+  G
Sbjct: 557 SADLAEEKGTYQFFEGSDWHTG--------------AYFEKRNYVSKEWKELEYKVRNTG 602

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN   +A APT++ + + G +  +DP  +  +++         V               
Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDPVMKKFFMEEKKGSMLPRVAP------------- 649

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                              +  D    +  A  ID  + +++   RQ+ IDQAQSLNLY+
Sbjct: 650 ------------------DLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSLNLYI 691

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +  + ++L  +Y +AW  G+KT YY+RS+S
Sbjct: 692 TNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722


>gi|167461831|ref|ZP_02326920.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383592|ref|ZP_08057350.1| ribonucleotide-diphosphate reductase subunit alpha-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152060|gb|EFX44996.1| ribonucleotide-diphosphate reductase subunit alpha-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 761

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 243/755 (32%), Positives = 354/755 (46%), Gaps = 92/755 (12%)

Query: 191 DGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQ---KATHH 246
           D  +E  +  +L  ++   I K EP +    A   L++L                     
Sbjct: 51  DQQAELAVYRSLKTAAVECITKDEPEWTFPAAAAYLQELYYIAAQNRSYSLTFRNGVIEG 110

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                + E      E+G+    L +S    ++  L   ++ E+D  F Y+GL  L +RY 
Sbjct: 111 SPYGSFYELISMLCEKGIYKAELIDSYSREEIEDLGRAIQPEKDKLFPYVGLITLAERYL 170

Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                G   E+PQ  FM +AM L ++E    + K   E Y  LS+ +   +TPTL N+G 
Sbjct: 171 ATGFAGEFYELPQERFMIIAMQLMIQEKRSTRLKWVKEAYWALSNQYMTVATPTLSNAGK 230

Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               QLSSCF+ TV D L GI+ +  + A L+K  GG+G     VR  G+ I G  GKS 
Sbjct: 231 ARAGQLSSCFIDTVDDSLQGIYDSNTDIARLSKMGGGIGVYMGKVRSRGSDIRGYKGKSS 290

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P+++  N+TAV+V+Q G RKG++  YL+ WH D+  FLDL+ N GD+R R HD+   
Sbjct: 291 GVLPWIRQLNNTAVSVDQLGTRKGSIAVYLDVWHKDILSFLDLKLNNGDERLRAHDIFPG 350

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRG 532
             IPDLFM+ V Q   + LF P EV               +    F   YE         
Sbjct: 351 VCIPDLFMEAVEQRGEFHLFDPHEVRQVMGYSLEDLYDEKVGEGSFRTKYEECVNNPQLS 410

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                  + A+ + +++L    ETG P++ ++D  N  +P +H G+++SSNLCTEI  N 
Sbjct: 411 RT----TVQAIDIMKRILISQLETGTPYMFYRDTVNRANPNKHKGMIYSSNLCTEIMQNM 466

Query: 593 SSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           S+                    +  VCNL SI+L     +       L   I   +R+LD
Sbjct: 467 SATTLIEEELNDGEIVIRKQAGDFVVCNLSSIHLARAVPDGV-----LERLIPVQIRMLD 521

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVIDIN   + +A  +N  +RAIGLG  G    L L  I + S EAV   +   E ISF 
Sbjct: 522 NVIDINRIEVPQATYTNKRYRAIGLGTFGLHHLLALKKIQWESEEAVVYNEALYERISFL 581

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           AI AS+ELA+E+GAY  F+GS W+ G              +   +       W +L+++ 
Sbjct: 582 AIQASMELAREKGAYPLFEGSGWETG--------------EYFELKGYKSEEWKKLQQQT 627

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  GMRN   MA+AP  + + I G + SIDP Y  +  +      + + N     +L  +
Sbjct: 628 KENGMRNGYLMAVAPNGSTSIIAGSTASIDPIYDLISYEEKT--TYKIANP--APDLSPQ 683

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            +W                            + TAF ID  W I  AS RQ+ IDQ QS 
Sbjct: 684 TIW---------------------------YYKTAFHIDQHWSIRQASARQRHIDQGQSF 716

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           NLY+  +   K+   ++  AW  GLK +YY+RSR+
Sbjct: 717 NLYVKPDIKAKQFLELHLDAWRSGLKASYYVRSRA 751


>gi|298674718|ref|YP_003726468.1| ribonucleoside-diphosphate reductase [Methanohalobium evestigatum
           Z-7303]
 gi|298287706|gb|ADI73672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalobium evestigatum Z-7303]
          Length = 695

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 197/792 (24%), Positives = 333/792 (42%), Gaps = 118/792 (14%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I   DG  + F+S ++   + +A   + +     +  +    + D              
Sbjct: 3   YIKKRDGRTVDFDSDKITQAIHKAIHSVNENDGD-LARKMSYQVIDN------------- 48

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                              LE   +  + +V           ++  Y E    YI    K
Sbjct: 49  -------------------LENRFKNTIPSVEDVQDIVEDVLIKNGYSEVAKSYILYRRK 89

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
              +          YL   +K++ D       +++L  RY L   NG+ +E P   F RV
Sbjct: 90  RSEV-----RETKKYLG--IKHD-DLKLSVNAIRVLERRYLLKGENGNPVETPSEMFERV 141

Query: 325 AMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           A  ++  +            EFY ++S+  F+ ++PTL N+GT   QLS+CF+  V D +
Sbjct: 142 ANSVSSIDKRYGYNPYDSKAEFYRMMSNLEFLPNSPTLMNAGTELGQLSACFVLPVEDSM 201

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF AL   +++ K  GG G  ++ +R  G  +  T G + G + F+ + +     + Q
Sbjct: 202 KDIFEALTNMSLIHKSGGGTGFSFSKLRPNGDIVKSTKGVASGPVSFMSIFDQATEVIKQ 261

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GGKR+GA    L   H D+ EF++    + +      + N +  + D FMK V  ++ + 
Sbjct: 262 GGKRRGANMGILRIDHPDIIEFIN----SKEKEGYLDNFNISVGVTDEFMKAVQSDSKYD 317

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L +P                              K   K+ A  ++  + TM + TG P 
Sbjct: 318 LINPRT---------------------------GKTTEKLRARDIFDLITTMAWRTGDPG 350

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           + F D  N R P  HV  + S+N C E+ L         CNLGSINL     N+  +++K
Sbjct: 351 MIFLDEINRRHPVSHVRTIESTNPCGEVPLLPY----ESCNLGSINLSKMVKNDTINWEK 406

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L +   + +  LDNVID N + + +  +    +R IGLG+MG       L+IPY S EA+
Sbjct: 407 LKNNTHSGIHFLDNVIDANKYPLNEIDRETKNNRKIGLGVMGLAEMFAKLNIPYNSEEAI 466

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E A+  M+FI+  ++  SVEL ++RG++ +FKGS W++                      
Sbjct: 467 ETAENIMKFINEESVKKSVELGEKRGSFPNFKGSQWEK---------------------- 504

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                        K   MRN+    IAPT TI+ I   S  I+P +   +V++ M+    
Sbjct: 505 -------------KYSSMRNATVNTIAPTGTISIIANTSSGIEPIFALSFVRNVMATQLL 551

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            VN    N  K+R+ + + ++ D+    GSI N++++P D++ +  T+ +IDP W +   
Sbjct: 552 EVNPVFENVAKERNFYSKDLMMDISKT-GSIQNLKQVPKDVRDLFVTSLDIDPEWHVRMQ 610

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK++D + S  + L E  +   +  IY  A+ +  K     R  S  +         
Sbjct: 611 AAFQKYVDNSVSKTVNLPEKATLDDVKRIYMMAYKLNCKGITIYRYGSKENQVLELGGLK 670

Query: 920 DGKLNAVPVTDP 931
             K   +     
Sbjct: 671 KEKGEGIIADSE 682



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 25/164 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD  KI++AI KA  +V            D+ + ++ Q +  L    K+ 
Sbjct: 4   IKKRDGRTVDFDSDKITQAIHKAIHSVNENDG-------DLARKMSYQVIDNLENRFKNT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            I  +ED+QD VE  L+++G+ ++ + Y+LYR +RS+VR  + +             +  
Sbjct: 57  -IPSVEDVQDIVEDVLIKNGYSEVAKSYILYRRKRSEVRETKKYLG-----------IKH 104

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
           D   +S N+ R+          L+  +   V  ET   M++ ++
Sbjct: 105 DDLKLSVNAIRVLER----RYLLKGENGNPV--ETPSEMFERVA 142


>gi|119944869|ref|YP_942549.1| ribonucleotide-diphosphate reductase subunit alpha [Psychromonas
           ingrahamii 37]
 gi|119863473|gb|ABM02950.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Psychromonas ingrahamii 37]
          Length = 757

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 192/788 (24%), Positives = 309/788 (39%), Gaps = 69/788 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   +G     +  ++  ++  A  GL++VS   V   ++   YDG+   D+   +I 
Sbjct: 5   LFVTKRNGKRERIDLDKIHRVITWAAEGLKNVSVSQVELNSHIQFYDGIRTDDIHETIIK 64

Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI E  P+Y  + A   +  LR++                      E+  +   +G
Sbjct: 65  AAADLISETSPDYQYLAAHLAVFHLRKKAYRRFTPPSI-----------FEHVSKMCSKG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E     +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDMHLLEDYSKQEFEEMEKFIVHDRDLKFSYAAVKQLEGKYLIQNRVTGDIYESAQFLY 173

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M VA  L        +      FY+ +S F     TP +    T   Q SSC L    D 
Sbjct: 174 MMVAACLFSNYEPAIRLSYVRRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIETGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G D  R   ++    +  LF +R+      
Sbjct: 294 QGGVRGGAATVFYPVWHLEVESLLVLKNNRGIDSNRIRHLDYGVQLSRLFYQRLIDKKNV 353

Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
            LFSP +V  L+D +     EFE  Y  YE   D       + ISAV L+  ++     T
Sbjct: 354 ALFSPSDVPGLYDAFFEDQDEFERLYNLYEGDPDIR----QKSISAVELFSLLMQERAST 409

Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612
           G  +I   D CN  SP       +  SNLC EI L +   +  +   G I L        
Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLQHIMDEEGEIALCTLSAFNL 469

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                 D+L      AVR LD+++D   + ++ A+ S+   R +G+G++ F   L    +
Sbjct: 470 GAIESLDELEELAELAVRALDSLLDYQDYPVKAAENSSMARRTLGIGVINFAYYLAKNGV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS +LA ERGA   F  + + QG+ P+D+     + 
Sbjct: 530 KYSDGSANNLTHKTFEAIQYYLLKASNKLAFERGACPKFNETRYSQGILPLDTYKKSLDN 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +    L W+ L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK
Sbjct: 590 I----CDEQYHLDWETLRSDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSVK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           ++  G    V        +     +  ++ D+  + G                       
Sbjct: 646 ASKDGILKQVVPEYEKYKQ-----NYELLWDIPNNQG----------------------- 677

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
               +E     QK+IDQA S N   D             L      A+ MG+KT YY  +
Sbjct: 678 ---YLELVGIMQKFIDQAISANTNYDPKRFSEGRVPMTNLLKDLLVAYKMGVKTLYYHNT 734

Query: 906 RSATSVEK 913
           R     E 
Sbjct: 735 RDGADDEN 742


>gi|114568950|ref|YP_755630.1| ribonucleotide-diphosphate reductase subunit alpha [Maricaulis
           maris MCS10]
 gi|114339412|gb|ABI64692.1| ribonucleoside-diphosphate reductase, alpha subunit [Maricaulis
           maris MCS10]
          Length = 637

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 197/679 (29%), Positives = 299/679 (44%), Gaps = 99/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G + L DRY L       E  Q  F RVA   A    +  + A   Y+
Sbjct: 49  IDRSRDAFLTEFGKKTLEDRYLL-----PGESYQDMFARVATAYA----DDTEHAQRLYD 99

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL +V D L  I G   EN  LA   GG+G  W
Sbjct: 100 YISQLWFMPATPVLSNGGADRGLPISCFLNSVGDSLDDIVGTWTENVWLASNGGGIGTYW 159

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  I    G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 160 GDVRSIGEKIGEI-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 218

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V  +  + L SP                    
Sbjct: 219 IRKPSGDFNRKSLNLHHGLNISDAFMEAVRDDEEFELKSPKS------------------ 260

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH---VGVVHS 581
                     +V + ++A  LW+K++ +  +TG P+I + D  N   P         V  
Sbjct: 261 ---------GEVVKTVNARKLWQKIIELRLQTGEPYIIYSDTVNRALPAHQRKLGLKVRQ 311

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC EI L +  ++          L +  A    ++      I    R LDNV    ID
Sbjct: 312 SNLCAEIMLPTGFDQNGKERTAVCCLSSLNAAKYMEWKDNPDFIEDIYRFLDNVLQDFID 371

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                +++A  S    R++GLGLMG  + L  ++ P+ S  A     +  + I   A +A
Sbjct: 372 RAPAEMDRAVYSAIQERSVGLGLMGMHTLLQQMNAPFESAMAKSWNLKLFKHIRTAADAA 431

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV+LA+ERGA    + S                + R                        
Sbjct: 432 SVKLAEERGACPDAEAS--------------GVKAR------------------------ 453

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
              S+ +AIAPTA+I+ ICG VS  I+P   N+Y    +SG  TV N  L   L+ + L 
Sbjct: 454 --FSHKLAIAPTASISIICGGVSAGIEPIPANVYTHKTLSGSTTVKNPQLEAVLEAKGLN 511

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              M + +   +GS+ ++E + +  K    TAFEID  W+IE A+ R  ++ Q+QSLN++
Sbjct: 512 TPGMWASILEAEGSVQHLECLDEHEKATFRTAFEIDQRWVIEHAADRTPYVCQSQSLNIF 571

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  G+K+ YY RS+S                 A   ++  S  
Sbjct: 572 LPGDVDKWDLHMLHWSAWEKGVKSLYYCRSKSIQRA-------------AYAGSEKKSDA 618

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                 ++ T   EC  CQ
Sbjct: 619 EVSMAEAAPTDYEECLACQ 637


>gi|21672461|ref|NP_660528.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25091141|sp|Q8K9W3|RIR1_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|21623076|gb|AAM67739.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 763

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 183/790 (23%), Positives = 323/790 (40%), Gaps = 65/790 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              L +   +G     N  ++  ++  A  GL+++S   V   +    Y+ +S  ++   
Sbjct: 2   KNSLFVTKRNGKKEKINLDKIHKVLNWAAKGLENISVSQVELRSRIQFYNNISTVNIHET 61

Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           +I ++  LI +  P+Y  + AR  +  LR++                       +  + +
Sbjct: 62  IIKAAADLISENTPDYQYMAARLAIFHLRKKAYGQFEPPNL-----------YYHVKKMV 110

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318
           + G     L ++    + V + + + + RD  F Y  ++ L  +Y     + G   E  Q
Sbjct: 111 QLGKYDEKLLQNYSFEEYVEMNSFVDHRRDMNFSYAAVKQLEAKYLLQNRVTGQIYESAQ 170

Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++ ++  L    ++  +      FYN +S+F     TP +    T   Q SSC L   
Sbjct: 171 FLYILISACLFSKYEKKVRMNYIQRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIEC 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D+L  I               G+G +   +R LG+ I        G IPF K       
Sbjct: 231 ADNLNSINATTSAIVKYVSQRAGIGINAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   +   WH+++E  L L+ N G +  R   ++ A  I  L  +R+   
Sbjct: 291 SCSQGGVRGGAATVFYPIWHLEIESLLVLKNNRGIEENRVRHLDYAVQINKLMYQRMLLG 350

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
              TLFSP +V  L++ +  + +   E Y +      I+  + I+A+ L+  ++     T
Sbjct: 351 QKITLFSPSDVPKLYEFFFSDQKKFKEIYIKYEKNRNIRK-KSINAIDLFCLIMRERAST 409

Query: 557 GHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614
           G  +I   D CN  S     +  +  SNLC EITL +          G I L    A N 
Sbjct: 410 GRIYIQHVDHCNSHSAFNSKLATIRQSNLCLEITLPTKPLNNIDDKNGEIALCTLSALNL 469

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D   L      +VR LD +++   + +  AKKS  + R++G+G++ F   L    +
Sbjct: 470 GLINDLHDLKELSTLSVRALDEILEYQNYPVVCAKKSAISRRSLGIGVINFAYYLAKNKV 529

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+   A  +  ++ E I ++ + AS ELA+E+G+ S F  + +  G FPID+     + 
Sbjct: 530 RYSDGSAKNLTHKTFEAIQYYLLKASCELAKEKGSCSLFNQTNYYLGKFPIDTYKKDIDS 589

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 N    L W+ L+K++K  G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 590 I----CNEPLHLNWNLLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFISIK 645

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
           S+  G    V                                      LK  +   +EI 
Sbjct: 646 SSKDGMLRQVVPEYKK--------------------------------LKSEYELLWEIP 673

Query: 853 PM-WLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                +E  +  QK++DQ+ S N          ++   K+L +    A+ +G+KT YY  
Sbjct: 674 NNIGYLELVAIMQKFVDQSISANTNYDPKRFLNEKIPMKQLIYDLLVAYKLGIKTLYYQN 733

Query: 905 SRSATSVEKS 914
           +R      ++
Sbjct: 734 TRDGAEDNQN 743


>gi|329847262|ref|ZP_08262290.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           biprosthecum C19]
 gi|328842325|gb|EGF91894.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           biprosthecum C19]
          Length = 589

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 197/678 (29%), Positives = 293/678 (43%), Gaps = 101/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY +       E  Q  F RVA   A    +  + A   Y+ 
Sbjct: 4   DPSRDALLTDFGKTTLDDRYLM-----PGESYQDMFARVATTYA----DDSEHAQRIYDY 54

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N G       SCFL  VPD L GI G   EN  LA   GG+G  W 
Sbjct: 55  ISRLWFMPATPVLSNGGASRGLPISCFLNAVPDSLEGIVGTWNENVALASNGGGIGTYWG 114

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+ +H ++EEFL++
Sbjct: 115 RVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVFHPEIEEFLEI 173

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    I D FM+ V     + L SP                     
Sbjct: 174 RKPSGDFNRKSLNLHHGIGITDEFMEAVRDGTPFGLRSPKNDE----------------- 216

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V R I A  LW+K+L +  +TG P++ F D  N   PQ        V  S
Sbjct: 217 ----------VVRYIDARNLWQKILEIRLQTGEPYLIFNDTINRSMPQHQRELGLKVTQS 266

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLC+EI L++  +           L +  A    ++      I   +R LDNV++     
Sbjct: 267 NLCSEIMLHTGPDHRGQDRTAVCCLSSVNAETFMEWRDAPGFIEDVMRFLDNVLEDFIQC 326

Query: 643 IEKAKKSN----HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              +  S        R++GLGLMGF S L    + + S  A        + +   A  AS
Sbjct: 327 APGSMDSAVYSALCERSVGLGLMGFHSFLQAQGVAFESAMAKSWNMRLFKHLRREADKAS 386

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           ++L QERG                       AE R  +                      
Sbjct: 387 IKLGQERGPC-------------------RDAEERGVME--------------------- 406

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L+ + +  
Sbjct: 407 RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLETKGINT 466

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             +  ++  H+GS+ +++ + +D K +  TAFEID  W++E A+ R   I Q+QSLN++L
Sbjct: 467 AEVWDNIVQHEGSVQHLDELSEDEKFVFKTAFEIDQRWVVELAADRTPEICQSQSLNIFL 526

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++  AW  GLK+ YYLRS+S                         +   
Sbjct: 527 PGDVDKWDLHMLHWTAWEQGLKSMYYLRSKSVQRA---------------SHAGSETKEI 571

Query: 937 SLGIPSSCTSDTECEVCQ 954
              + +  T   EC  CQ
Sbjct: 572 VEKMSTPKTDYEECLACQ 589


>gi|148554423|ref|YP_001262005.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingomonas
           wittichii RW1]
 gi|148499613|gb|ABQ67867.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas
           wittichii RW1]
          Length = 653

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 200/679 (29%), Positives = 305/679 (44%), Gaps = 98/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G + L DRY L       E  Q  F+RVA   A    + +  A   Y+
Sbjct: 64  VDHSRDALLTDFGKETLTDRYLL-----PGESYQDLFVRVASAYA----DDQPHAQRLYD 114

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W
Sbjct: 115 YISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYW 174

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 175 GSVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAAVYLDVSHPEIEEFLE 233

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R+  +++    + D FM+ V   A W L SP +                  
Sbjct: 234 IRKPSGDFNRKALNLHHGVLLTDAFMEAVRDGAEWDLVSPKD------------------ 275

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                          + A AL++K++     TG P+I F D  N   P+ H      V +
Sbjct: 276 ---------GSKRSSVDARALFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDVGLKVST 326

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EITL +  ++  +       L +       +++     +   +R LDNV    ID
Sbjct: 327 SNLCSEITLPTGRDQHGMDRTAVCCLSSLNLETWDEWNGDKRFVEDVMRFLDNVLQDYID 386

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +AK S    R++GLG+MGF S L    +P+    A        + I+  A  A
Sbjct: 387 RAPDEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHIAAAAAEA 446

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ LA ERG                 D+  L    R                        
Sbjct: 447 SMLLASERGPCP--------------DAADLGVMER------------------------ 468

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
              S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F++ N +L   L ++   
Sbjct: 469 --FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIKNPYLQKLLAEKSKD 526

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +A+ + +    GS+ +++ +  D K ++ T+FEID  WLIE A+ R  +IDQAQSLNL+
Sbjct: 527 SDAVWNSILEKGGSVQHLDFLTQDEKDVYKTSFEIDQRWLIELAADRTPYIDQAQSLNLF 586

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +  +     L  ++ +AW +G+K+ YYLRS+S                      + +++ 
Sbjct: 587 IPADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA------------GFAGGVEADNTP 634

Query: 936 HSLGIPSSCTSDTECEVCQ 954
               I        EC  CQ
Sbjct: 635 DLKQIELETKDYDECLACQ 653


>gi|254293197|ref|YP_003059220.1| ribonucleotide-diphosphate reductase subunit alpha [Hirschia
           baltica ATCC 49814]
 gi|254041728|gb|ACT58523.1| ribonucleoside-diphosphate reductase, alpha subunit [Hirschia
           baltica ATCC 49814]
          Length = 621

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 198/679 (29%), Positives = 293/679 (43%), Gaps = 101/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G + L DRY L   G      Q  F RVA   A    +  + A   Y+
Sbjct: 35  IDESRDELLTEFGKKTLTDRYILPGEGY-----QEMFARVAEAYA----DDAEHAQRIYD 85

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL  V D L GI     EN  LA   GG+G  W
Sbjct: 86  YMSRLWFMPATPVLSNGGAGRGLPISCFLNDVNDSLDGIVETWNENVWLASNGGGIGTYW 145

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  I    GK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 146 GNVRSIGETIGN-AGKTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLE 204

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V  +  + L SP                    
Sbjct: 205 IRKPSGDFNRKSLNLHHGLNISDAFMEAVKNDEEFGLISPKT------------------ 246

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH---VGVVHS 581
                     +  +KI+A  LW+K+L +  +TG P++ + D  N   P         V  
Sbjct: 247 ---------GEEVKKINARKLWQKILEVRIQTGEPYLIYSDTVNNAMPAHQRQLGMKVKQ 297

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EI L++  +           L +  A    ++    + +    R LDNV    ID
Sbjct: 298 SNLCSEIMLHTGLDHLGNDRTAVCCLSSVNAEKFLEWKNDENFLEDIFRFLDNVLQDFID 357

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +A  S    R++GLGLMG  S L  +++P  S  A    +   + I   + +A
Sbjct: 358 RAPPEMARAAYSATRERSVGLGLMGMHSFLQSMNVPMESATAKSWNNMIFKHIRRGSDAA 417

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV+LA+ERG     +                                             
Sbjct: 418 SVKLAKERGPCPDAEECGVMA--------------------------------------- 438

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ MAIAPTA+I+ ICG  S  I+P   N+Y    +SG FTV N  L   L+ +   
Sbjct: 439 -RFSHKMAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPHLEKVLEAKGKN 497

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + + + +   +GS+  ++ + +  K    TAFEID  WLIE A+ R  +I QAQSLNL+
Sbjct: 498 TDGIWAIILEAEGSVQGLDFLDEHEKATFRTAFEIDQRWLIELAADRTPYICQAQSLNLF 557

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  GLK+ YY RS+S                 +    +     
Sbjct: 558 LPADIDKWDLHMLHWSAWEKGLKSLYYCRSKSVQRA-------------SFAGAEDKVKV 604

Query: 936 HSLGIPSSCTSDTECEVCQ 954
             +  P   T   EC  CQ
Sbjct: 605 EGMDTPD--TDYDECLACQ 621


>gi|209966732|ref|YP_002299647.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           centenum SW]
 gi|209960198|gb|ACJ00835.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodospirillum
           centenum SW]
          Length = 621

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/680 (29%), Positives = 289/680 (42%), Gaps = 102/680 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+
Sbjct: 34  VDHSRDNLLTAFGKATLDDRYLL-----PGESYQDLFARVASYYA----DDTAHAQRLYD 84

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI G   EN  LA   GG+G+ W
Sbjct: 85  YISRLWFMPATPVLSNGGTDRGLPISCFLNEASDSLEGIVGLWNENVWLAAKGGGIGSYW 144

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 145 GNLRSIGERVKG-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAACYLPVWHPEIEEFVE 203

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    IPD FM+ V  +  W L SP +                 
Sbjct: 204 MRRPTGGDPNRKALNLHHGVVIPDAFMRAVEADEDWKLVSPKD----------------- 246

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                         R +SA  LW ++LT   ETG P++ F D  N   P+ H      V 
Sbjct: 247 ----------GATLRVVSARQLWIRILTARVETGEPYLLFIDHVNRAIPEHHKLAGLTVK 296

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC EITL +  +           L +       ++    + I   +R LDNV+    
Sbjct: 297 MSNLCAEITLPTGLDPWGQQRTAVCCLSSLNLETFLEWQDHPTFIEDTLRFLDNVLTDFI 356

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                       +    R++GLG+MGF S L    +P     A          I   A +
Sbjct: 357 AKAPDEMARAKYAAMRERSVGLGVMGFHSFLQGQGVPIEGVMAKVWNKRIFAHIKRQADA 416

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+ L  ERG                 D+     + R                       
Sbjct: 417 ASLALGAERGPCP--------------DAAEYGGKER----------------------- 439

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN +AIAPTA+I+ ICG  S  I+P   N Y    +SG ++V N +L   L++   
Sbjct: 440 ---FSNKIAIAPTASISIICGGASPGIEPIAANAYTHKTLSGSWSVRNKYLEAVLERHGR 496

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            DE   S +  + GS+ +++ +  D K +  TAFEID  WLIE A+ R  +I Q+QSLN+
Sbjct: 497 NDEDTWSAITLNGGSVQHLDFLSQDEKDLFRTAFEIDQRWLIEHAADRTPFICQSQSLNV 556

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L  +   + L  I+ QAW  G+K+ YYLRS S    E                    ++
Sbjct: 557 FLPADVHKRDLHQIHFQAWKKGVKSLYYLRSLSVQRAE---------------SESRPAA 601

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                 P       EC  CQ
Sbjct: 602 AAKPDTPPEPAKYEECLACQ 621


>gi|257468677|ref|ZP_05632771.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062932|ref|ZP_07927417.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688608|gb|EFS25443.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
          Length = 748

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 232/835 (27%), Positives = 380/835 (45%), Gaps = 120/835 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G   + +  ++   +  AC GL +V+   + S       + ++   ++ +LI  +
Sbjct: 4   VINRAGIRENLDITKIREKLVRACEGL-EVNMVELESYIDSIYQENITTKKIQESLINQA 62

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +   +E ++  V  R L+ +  REV                   + +      E+G+ 
Sbjct: 63  VAMTSFEESDWTYVAGRLLMMETEREVFHKRGFSYGD---------FYKTIKTLTEKGIY 113

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              L +     ++  L   +   RD  ++Y G  +  +RY L   G+  E+PQ  FM +A
Sbjct: 114 DSRL-QEYTKDEIKELEKVIDISRDMMYDYAGANMFVNRYLLKFKGNIYELPQEVFMCIA 172

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LA+ E ++   A  FYN LS      +TP L N       LSSCF+T + D++  IF 
Sbjct: 173 MLLAINEEDRVAVAKRFYNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFY 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            +   A ++K  GG+G + + +R   + ++G    S GV+P++K+ NDTAVAVNQ G+R 
Sbjct: 233 NIDTIAKISKSGGGVGLNISRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRA 292

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAV A L++WH+D+E FL+L+   GD R + +D+     + DLFMKRV +N  WTL  P 
Sbjct: 293 GAVTAALDSWHLDIELFLELQTENGDQRGKAYDIYPQVVLSDLFMKRVEENLEWTLIDPY 352

Query: 506 EVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           EV   +     +LYG++FE  YE  E+      +++ + I A  L+++++ +  ETG P+
Sbjct: 353 EVRKKYGVELCELYGEKFEEIYEKLEKDTS---LELKKVIKARELFKEIMKVQIETGMPY 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCN 601
           I FKD  N+ +   H G++ + NLC E   N S                     E   CN
Sbjct: 410 IFFKDRANLMNHNSHKGMIGNGNLCMESFSNFSPSKNFAEETVEEKGVRTVNLGEVHTCN 469

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L S+NL           ++L + + TAVR+LDN ID+    I+++ K N ++R IG+G M
Sbjct: 470 LVSLNLAEILK------EELENIVDTAVRILDNTIDLTKTPIKESDKHNVSYRTIGVGTM 523

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L    + Y   E++   DE  E I+ ++I +S  LA++RG Y +FKGSLWD+G+F
Sbjct: 524 GLADYLAREFMIYD--ESMNDIDELFEEIALYSIKSSALLAKDRGEYPAFKGSLWDKGLF 581

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    +              W E+ + VK  GMRN    AIAP  + + + G + S
Sbjct: 582 FQKDREWYMKNSKYADK-------WGEVFELVKKYGMRNGELTAIAPNTSTSLLMGATAS 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           ++P++   Y++ N  G    V  +    LK R  +     +                   
Sbjct: 635 VNPTFSRFYIEKNQKGAVPRVVKY----LKDRAWFYPEFKN------------------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLK 898
                    ++P   ++  SR  KW  Q  S+ L  D       K +   +  AW  G K
Sbjct: 672 ---------VNPQTYVKIMSRIGKWTTQGVSMELIFDLNKNIKAKDIYDTFMTAWKNGCK 722

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           + YY+R+     ++K+T                          +      ECE C
Sbjct: 723 SVYYIRT-----IQKNT--------------------------NIMNEKEECESC 746


>gi|284051980|ref|ZP_06382190.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira
           platensis str. Paraca]
 gi|291570481|dbj|BAI92753.1| ribonucleoside-diphosphate reductase alpha chain [Arthrospira
           platensis NIES-39]
          Length = 752

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 212/790 (26%), Positives = 362/790 (45%), Gaps = 84/790 (10%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           +D P   +++++  DG+L   +  R+  +V  AC GL   +   + +     + +G++  
Sbjct: 8   TDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGLDA-NPITLEAGLTTRLKNGVTTR 66

Query: 197 DLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +++  LI  +  L    +P++  V  R  +  L ++ L +   + +          Y + 
Sbjct: 67  EIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVSRGYQYED---------YCQT 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               ++ G     L        L      +  + D  ++Y G  +L  RY L       E
Sbjct: 118 VTTKVKAGQYDDRLL-KYTPEQLREAGTWINPQWDKDYDYAGAILLTKRYLL-----PQE 171

Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           +PQ   +  A+ LA+ E   ++   A +FY  ++      +TP L N    +  LSSCF+
Sbjct: 172 LPQEALLSCALLLAVVEAPEKRMFWAHKFYQAIALRQISLATPILANLRIPNGSLSSCFI 231

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D+L  IF  +++ A ++K  GG+G + + +R  G+ + G    S GVIP++K+ ND
Sbjct: 232 IGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWIKLLND 291

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           TA+AVNQGG+R GA+   L+ WH+D+ EFL+++   GD RR+ +D+     I D FM+RV
Sbjct: 292 TAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISDEFMRRV 351

Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
                WTL  P EV      +L +L+G+EFE++Y+  E  +   ++K++++I+A  L++ 
Sbjct: 352 RNCENWTLVDPYEVRVKLGIELSELWGEEFELSYQKIE-SSLDSKLKLYKRINARELFKN 410

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++    ETG P++ FKD  N  +P QH G +   NLC E   N    E     L     L
Sbjct: 411 IMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----LAHTCNL 465

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   D+  L +    AVR+LDN I+I     + +   N  +R IG+G+MG    L 
Sbjct: 466 NSLNLANLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQCYRTIGVGVMGLADWLA 525

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                Y   + +       E I F+    S+EL++ERGAY +F GS W QG        +
Sbjct: 526 KRRFSYNHVQEI---SNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL------I 576

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
            A+  D    +   ++ W EL + ++  G+RNS+  AIAP  + + + G + S+ P Y  
Sbjct: 577 GAKPVDWFLTHADDKIRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASVLPCYSR 636

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            +      G   +   F      + + W                     P++      T 
Sbjct: 637 FFYDKWAKGTVPIAPPF-----IKENFW-------------------FYPEN-----KT- 666

Query: 849 FEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLM 895
             +D   ++++ +  Q+WID   S+    NL       E        K +      AW  
Sbjct: 667 --LDQQIVVKAVATMQQWIDTGISMELMFNLNQGVYFPEEPDRSLKAKDIFETLMAAWEQ 724

Query: 896 GLKTTYYLRS 905
           G K  YY+R+
Sbjct: 725 GCKAIYYVRT 734


>gi|302390649|ref|YP_003826470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosediminibacter oceani DSM 16646]
 gi|302201277|gb|ADL08847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosediminibacter oceani DSM 16646]
          Length = 772

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/671 (27%), Positives = 302/671 (45%), Gaps = 83/671 (12%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE----KEKRAV 340
              +          +L  RY      G  +E P+    RVA  +A  E       E  A 
Sbjct: 1   MKNKKLRLTENARVVLQKRYLAKDEKGQVVETPEDMIERVARAVAAAEENYGQDPEFWAE 60

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           +FY++++   FM ++PTL N+G    QLS+CF+  V D + GIFGA++  A++ K  GG 
Sbjct: 61  KFYDMMAELKFMPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFGAIKNAALIHKSGGGT 120

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  GA +  T G++ G + F+KV N    AV QGG+R+GA    L   H D+ 
Sbjct: 121 GMSFSRLRPKGATVRSTGGEASGPVSFMKVFNAATEAVKQGGRRRGANMGILRVDHPDIL 180

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+  +    +D     + N +  I D FM+ +  +  + L  P+               
Sbjct: 181 EFIRCK----EDNNELTNFNISVAITDKFMETLKNDGTYELVDPNT-------------- 222

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         KV  ++ A  ++  ++ M ++ G P I F D  N ++P  H+G + 
Sbjct: 223 -------------GKVTGRLKAREVFDLIVDMAWKNGEPGILFIDRVNAKNPTPHIGQIE 269

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVI 636
           S+N C E  L         CNLGSINL          N+ DY++L   +  AVR LD+VI
Sbjct: 270 STNPCGEQPLLPF----ESCNLGSINLSKFVKEGSTGNEIDYEELKQVVHMAVRFLDDVI 325

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N + + + ++    +R IGLG+MGF   L  L IPY S EAV++A+E M FI   A  
Sbjct: 326 DVNKYPLPEIEQMTKANRKIGLGVMGFADMLIKLGIPYDSEEAVKLAEEVMGFIQREARK 385

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ RGA+ +F GS++D    P+                                 
Sbjct: 386 ASEDLAKTRGAFPNFPGSVYDVPGGPL--------------------------------- 412

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDL 815
            +RN+    IAPT TI+ I G S  I+P +   + ++ +       +      E+++R L
Sbjct: 413 -LRNATVTTIAPTGTISIIAGCSSGIEPVFALAFERNVLDKQRLIEIYPLFEEEMRRRGL 471

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +   ++ ++    GS+  I  IP+++K++  TA +I P W +   +  QK+ D A S  +
Sbjct: 472 YSPELMEEVLE-KGSLKGIAGIPEEVKRVFVTAHDISPEWHVRIQAAFQKYTDNAVSKTV 530

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE--KSTLKGVDGKLNAVPVTDPN 932
                 + + +  +Y  A+ +G K     R  S       K T +G +         +  
Sbjct: 531 NFPHSATREDVKKVYLLAYELGCKGVTVYRDGSREEQVLKKGTRQGQEAGAGTCGCEELP 590

Query: 933 SSTHSLGIPSS 943
                   PS 
Sbjct: 591 KEIKPRPRPSV 601


>gi|296536500|ref|ZP_06898591.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC
           49957]
 gi|296263179|gb|EFH09713.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC
           49957]
          Length = 633

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/692 (29%), Positives = 300/692 (43%), Gaps = 101/692 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY +       E  Q  F RVA   +    +    A   Y+
Sbjct: 21  VDRSRDALLTDFGKATLDDRYLM-----PGESYQDLFARVASAYS----DDSAHAQRIYD 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 72  YISRLWFMPATPVLSNGGTTRGLPISCFLNEANDSLNGIVDLWNENVWLASKGGGIGSYW 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 132 GNLRSIGEKVGQ-NGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLPVSHPEIEEFID 190

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ TG D  R+  +++    +PD FM+ V  +  W L SP +                 
Sbjct: 191 LRRPTGGDPNRKALNLHHGILVPDAFMRAVEADEEWALTSPKD----------------- 233

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V RK+SA  LW ++L    E G P+I + D  N   P+        V 
Sbjct: 234 ----------GAVVRKVSARGLWIRILMARIEQGEPYIIYSDAVNNARPEHQKLAGLEVK 283

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC+EITL +  ++          L +      F++   A  I   +R LDNV    I
Sbjct: 284 TSNLCSEITLPTGRDQHGKERTAVCCLSSLNLETWFEWKDDARFIPDVMRFLDNVLQGFI 343

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D    ++ +AK S    R++GLG+MGF S L   ++P+ S  A        + I   A  
Sbjct: 344 DDAPDSMARAKYSAMRERSVGLGVMGFHSFLQAQNVPFESVIAKVWNKRMFKHIREQADL 403

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA+ERG                                                  
Sbjct: 404 ASRLLAEERGPCP------------------------------------------DAAEY 421

Query: 757 GMR--NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G     SN MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L + 
Sbjct: 422 GFMERFSNKMAIAPTASISIICGGASPGIEPIAANVYNHKTLSGSFIVRNPYLKKVLAKH 481

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
              D+   + +  + GS+ +++ + +  K +  TAFE+D  W++E A+ R  +I Q+QS+
Sbjct: 482 GRDDDETWTTITVNKGSVSHLDFLDEQEKAVFKTAFELDQRWVVEHAADRTPYICQSQSV 541

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV----EKSTLKGVDGKLNAVPV 928
           NL+L  +   + L  I+ QAW  G+K+ YY RS S        EK  ++   G   A  +
Sbjct: 542 NLFLPADVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADAISEKVAVQPELGFAAATSI 601

Query: 929 TDPNSSTHSLGIPSSC------TSDTECEVCQ 954
                   +  + +        T   EC  CQ
Sbjct: 602 DAVLPVPPAPRVRAVAGEGGNGTDYEECLACQ 633


>gi|330834375|ref|YP_004409103.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera cuprina Ar-4]
 gi|329566514|gb|AEB94619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Metallosphaera cuprina Ar-4]
          Length = 820

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 196/877 (22%), Positives = 374/877 (42%), Gaps = 115/877 (13%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
            S ++     K+ ++  DG    F  +++   +      + D   + ++ +  +N  D +
Sbjct: 2   QSDTNVLSLSKISVIKRDGKKEEFKLEKILSKLGP----MHDEIVEGIVKDVLQNSTDNV 57

Query: 194 SESDLETALIFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
             + +   ++   R LIE   +      +  R++L ++   V      K           
Sbjct: 58  INTRVIADIVE--RNLIEGSLEHQELMDLAKRYVLSRIYNHVFGKGKWKGID-------- 107

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
                                                ++D    Y  L++L  RY L   
Sbjct: 108 -------------------------------------DKDLLISYNALKVLEARYLLKNP 130

Query: 311 G--SRIEMPQAFFMRVAMGLAL-KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
                +E PQ  F RVA  LA  +  ++++   +FY+++S+  F+ +TP L NSGTR   
Sbjct: 131 ETLRYVETPQMMFRRVASYLAGVEREKRKEIEEKFYDIMSTLRFVPNTPALMNSGTRLGI 190

Query: 368 LSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           LS+CF+  V D +      GI+  L+  A++ +  GG G D++ +R  G  +  T G + 
Sbjct: 191 LSACFVLPVKDSMTTQNGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVAS 250

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G + F+K+ + +   V QGGKR+GA    +  WH D+E+F+  +     D  +  + N +
Sbjct: 251 GPVSFMKIFDVSTDVVKQGGKRRGANMGVMHVWHADIEDFIRSKTGDLKDV-QLQNFNIS 309

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------- 531
             + D FM+ V +     L +P +       +      A         +           
Sbjct: 310 VGVYDYFMEAVMKEEQVPLITPRKTKIKGTDHEYYIVKARNYMREDWVQEEILRELEERG 369

Query: 532 --------------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                E  + R ++A  L+++++   +++G P + F D  N R 
Sbjct: 370 PVYLDESKIITVDEALAIAESEGAIIRWVNARNLFQQIVKGAWDSGDPGLLFIDEINRRH 429

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRT 627
           P  ++G + ++N C E  L S       CNLGS+NL             D++ L + I+ 
Sbjct: 430 PVWYLGKIQATNPCGEEPLLS----WESCNLGSLNLELFVKEKNGKPYIDWEDLTNVIKY 485

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AVR LDNV+D N + + + +++    R +GLG+MG   AL  L IPY S +A+ ++    
Sbjct: 486 AVRFLDNVVDANRYPLPQIEQATKMTRKVGLGVMGLARALIKLGIPYDSVDAIYVSYNLA 545

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQ---------GVFPIDSIGLLAEVRDELAM 738
           +FI + A+ AS+ELA+E+G++ ++    +            +  I  +        +  M
Sbjct: 546 KFIYYQAMKASIELAKEKGSFPAYDPVRYKDIWESAKEFEDILAISEVKGEPSDYAKAIM 605

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +++   ELK      G+RN+  +++APT TI+ I G S SI+P +   ++++   G 
Sbjct: 606 AEAAKIDISELKDLRMRYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGK 665

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  ++   +  L++ +L    +I  +    G +G+   +P  ++++  TA E++PM+ + 
Sbjct: 666 FMEIDPLFLEYLRKYELDTPEVIKKIAES-GEVGDNPFVPKTIRRLFRTAHEVEPMYHVL 724

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
             +  Q+W D   S  + L  E + + +  +Y  AW +G+K     R +S +   +    
Sbjct: 725 HQAAWQQWNDSGTSKTINLRSEETEETVGKVYLTAWRLGIKGITVYRDKSKSQ--QVIYF 782

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           G+  +         +       +  S      C+ C+
Sbjct: 783 GLKKEREEKSKQTTSLRLEKKFVEVSENFSGGCKTCE 819



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  + VIKR+G    F   KI        ++  G          +I++ + +  +    
Sbjct: 9   SLSKISVIKRDGKKEEFKLEKI--------LSKLGPMH------DEIVEGIVKDVLQNST 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQ-----SGHHKITREYVLYR 122
            +  +  +     I D VE +L++          + + YVL R
Sbjct: 55  DNVINTRV-----IADIVERNLIEGSLEHQELMDLAKRYVLSR 92


>gi|253582917|ref|ZP_04860135.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           varium ATCC 27725]
 gi|251835123|gb|EES63666.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           varium ATCC 27725]
          Length = 748

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 233/835 (27%), Positives = 376/835 (45%), Gaps = 120/835 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G   + +  ++   +  AC GL +V+   + S       + ++   ++ +LI  +
Sbjct: 4   VINRAGIKENLDIIKIREKLIRACEGL-EVNMVELESYIDSIYQENITTKKIQESLINQA 62

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +   +E ++  V  R L+ +  REV         +         + +      E G+ 
Sbjct: 63  VAMTSFEESDWTYVAGRLLMMETEREVFHKRGFSYGE---------FYKTIKTLTENGIY 113

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              L +   + ++  L   +   RD  ++Y G  +  +RY L   G+  E+PQ  FM +A
Sbjct: 114 DNRL-QEYTEDEIKELEKAIDISRDMMYDYAGANMFVNRYLLKYKGNIYELPQEVFMCIA 172

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LA+ E  +   A  FYN LS      +TP L N       LSSCF+T + D++  IF 
Sbjct: 173 MLLAINEENRVLVAKRFYNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFY 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            +   A ++K  GG+G + + +R   + ++G    S GV+P++K+ NDTAVAVNQ G+R 
Sbjct: 233 NIDTIAKISKSGGGVGLNVSRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRA 292

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAV   L++WH+D+E FL+L+   GD R + +D+     + DLFMKRV  N  WTL  P 
Sbjct: 293 GAVTVALDSWHLDIELFLELQTENGDQRGKAYDIYPQVVLSDLFMKRVENNLEWTLVDPY 352

Query: 506 EVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           EV      +L +LYG++FE  Y+  E+      +K+ + I A  L+++++ +  ETG P+
Sbjct: 353 EVRIKYGVELCELYGEKFEEIYKALEKDTS---LKLKKVIKARELFKEIMKVQIETGMPY 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCN 601
           I FKD  N+ +   H G++ + NLC E   N                       E   CN
Sbjct: 410 IFFKDRANLMNHNNHKGMIGNGNLCMESFSNFFPSKDFTEKVVEEKGVRSAKLGEVHTCN 469

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L S+NL           ++L + + TAVR+LDN ID+    I ++ K N  +R IG+G M
Sbjct: 470 LVSLNLAEIAR------EELENIVDTAVRMLDNTIDLTKTPIMESDKHNIAYRTIGVGTM 523

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G    L    + Y   E++   DE  E I+ ++I +S  LA+ RG Y  FKGS+WD+GVF
Sbjct: 524 GLADYLAREFMIYD--ESLNDIDELFEEIALYSIKSSALLAKNRGQYPMFKGSMWDRGVF 581

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    + +D    N      W+E+ + V   GMRN    AIAP  + + + G + S
Sbjct: 582 F-------QKNKDWYIKNSKYATKWNEVFELVAKYGMRNGELTAIAPNTSTSLLMGATAS 634

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           ++P++   Y++ N  G    V  +    LK R  +     +                   
Sbjct: 635 VNPTFSRFYIEKNQKGAVPRVVKY----LKDRAWFYPEFKN------------------- 671

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLK 898
                    ++P   +E  SR  KW  Q  S+ L  D       K +      AW  G K
Sbjct: 672 ---------VNPQIYVEIMSRIGKWTTQGVSMELIFDLNKNIRAKDIYNTLMSAWKNGCK 722

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           + YY+R+     ++K+T                          +      ECE C
Sbjct: 723 SIYYIRT-----IQKNT--------------------------NIMNEKEECESC 746


>gi|21233408|ref|NP_639325.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66770373|ref|YP_245135.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21115248|gb|AAM43207.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66575705|gb|AAY51115.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 827

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 242/824 (29%), Positives = 375/824 (45%), Gaps = 99/824 (12%)

Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A + H+++         I  + G   I F   RLE  +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPARLERAIDQIHAEFPQLDVGDYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  + +S    +L+     +  ERD  F Y GL +
Sbjct: 157 RFYDAGQKYGSFVGLQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTP 356
           L  RY    N     E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   +TP
Sbjct: 217 LATRYLATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATP 276

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G
Sbjct: 277 TLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRG 336

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R 
Sbjct: 337 VSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRA 396

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQ 528
           HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        +     +
Sbjct: 397 HDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEE 456

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI
Sbjct: 457 VVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEI 516

Query: 589 TLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK-----LAST 624
             N S                     +  VCNL SINL           D      L   
Sbjct: 517 LQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERL 576

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA + +D
Sbjct: 577 IPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSD 636

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           E  E I++  + AS+ELA+E+G YS F+GS W  G              +       +  
Sbjct: 637 ELYERINYLTVQASMELAKEKGTYSVFRGSDWHTG--------------EYFRARDYNSP 682

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V   
Sbjct: 683 QWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP 742

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
                                           +  D    +   A+++D    +   +RR
Sbjct: 743 -------------------------------GLSLDTWPYYEKGAYKVDQFASVRQNARR 771

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 815


>gi|188993573|ref|YP_001905583.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735333|emb|CAP53547.1| Ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. campestris]
          Length = 827

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 242/824 (29%), Positives = 375/824 (45%), Gaps = 99/824 (12%)

Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A + H+++         I  + G   I F   RLE  +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPARLERAIDQIHAEFPQLDVGDYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  + +S    +L+     +  ERD  F Y GL +
Sbjct: 157 RFYDAGQKYGSFVGLQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTP 356
           L  RY    N     E+PQ  ++ +A+ L   E  +E+R     E Y  LS+ +   +TP
Sbjct: 217 LATRYLATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATP 276

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G
Sbjct: 277 TLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRG 336

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD R R 
Sbjct: 337 VSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRA 396

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQ 528
           HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        +     +
Sbjct: 397 HDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEE 456

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSNLCTEI
Sbjct: 457 VVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEI 516

Query: 589 TLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK-----LAST 624
             N S                     +  VCNL SINL           D      L   
Sbjct: 517 LQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERL 576

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA + +D
Sbjct: 577 IPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSD 636

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           E  E I++  + AS+ELA+E+G YS F+GS W  G              +       +  
Sbjct: 637 ELYERINYLTVQASMELAKEKGTYSVFRGSDWHTG--------------EYFRARDYNSP 682

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V   
Sbjct: 683 QWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP 742

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
                                           +  D    +   A+++D    +   +RR
Sbjct: 743 -------------------------------GLSLDTWPYYEKGAYKVDQFASVRQNARR 771

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ IDQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 815


>gi|291279559|ref|YP_003496394.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter
           desulfuricans SSM1]
 gi|290754261|dbj|BAI80638.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter
           desulfuricans SSM1]
          Length = 768

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/659 (27%), Positives = 302/659 (45%), Gaps = 80/659 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYN 344
                 L +L  RY      G+ +E P+  F RVAM +AL +         EK A EF++
Sbjct: 15  KLSANALTVLRKRYLKKDEKGNIVETPKGMFQRVAMNIALADLNYDKNADIEKTAKEFFD 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++ S  F+ ++PTL N+G    QLS+CF+  V D L  IF A++  A++ K  GG G  +
Sbjct: 75  IMVSLKFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G + F+ V +     + QGG R+GA    L   H D+ EF+ 
Sbjct: 135 SRLRPKDDVVKTTKGVSSGPVSFMTVFDSATETIKQGGTRRGANMGILRVDHPDIMEFIY 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K    D+ +  + N +  + + FM+ V +   + L +P +                  
Sbjct: 195 AKK----DKTKLTNFNLSVAVTEKFMEAVIKGEDYPLINPKD------------------ 232

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     KV +K++A  ++ +M+ + +E G P I F D  N  +P    G + S+N 
Sbjct: 233 ---------GKVVKKLNAKEVFDQMVKLAWEGGDPGIVFIDRINKDNPTPKEGEIESTNP 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL     N +  +D+L   I TAV  LDNVID+N + I 
Sbjct: 284 CGEQPLLPY----ESCNLGSINLGKFVKNKKILWDELKKVIHTAVHFLDNVIDMNNYPIP 339

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++    +R IGLG+MG+   + LL IPY S +A+++A++ M FI     +ASV+LA++
Sbjct: 340 QIEEMTKKNRKIGLGVMGWADMMALLEIPYNSEDALKLAEKVMSFIQEEGRNASVKLAEK 399

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG++ +FK S++ +  F +                                  +RN+   
Sbjct: 400 RGSFPNFKDSIYPEKGFKM----------------------------------LRNATVT 425

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I G S  I+P +   + ++ +  D    VN       K+   + + ++  
Sbjct: 426 TIAPTGTISIIAGASSGIEPYFAIAFYRNVLDNDKLVEVNPIFKEIAKREGFYSDELMEK 485

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882
           +    G + +I+ +P+  K++  TA EI P+W ++  +  Q++ D A S  +   +E + 
Sbjct: 486 IAES-GHLEDIDEVPEKWKRVFVTAHEISPIWHVKMQAAFQRYTDNAVSKTVNFPNEATV 544

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + +  +Y  A+  G K     R  S    V     K    +   V +           +
Sbjct: 545 EDVREVYLLAYKEGCKGITIYRDGSREGQVINVGTKDKKEETQTVEIRGQFRPRPRPKV 603


>gi|48696770|ref|YP_024594.1| ORF51 [Ostreid herpesvirus 1]
 gi|81986457|sp|Q6R7H4|RIR1_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase large subunit
 gi|41352434|gb|AAS00941.1| ORF51 [Ostreid herpesvirus 1]
          Length = 835

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 214/791 (27%), Positives = 357/791 (45%), Gaps = 70/791 (8%)

Query: 204 FSSRTLIEKEPNYAKVTARF--LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            +   LI   P+YA +  R    + ++      T      +    E            ++
Sbjct: 72  MAITPLIPSHPDYAFLAGRVSAYMTQINTPKTFTDAVYGIQMAVGETNGFRSPMKP--VK 129

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            G+   ++    ++     L   +   RD++  Y+G+  L +   + +N    E PQ  F
Sbjct: 130 GGLSDEIVD--FVNEHGARLDGMIDDVRDYSHNYMGITGLLNGVAIKVNKKLYERPQYVF 187

Query: 322 MRVAMGLA-LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           MRVAM +  L      +   + Y L+S      ++P LFN GT     +SCFL  + D++
Sbjct: 188 MRVAMAMTDLSSETALEDIWQTYMLISGQCLSMASPVLFNGGTSSSNTASCFLLDMGDNM 247

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I   + +   L   +GG+G +++ +R  G+ I G  GKS G+   L + +  A +V+Q
Sbjct: 248 VSITKKVAQTMTLIAKNGGIGINFSKLRATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQ 306

Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           G  KR GA+  YL  WH D+ ++L  R   +G++  + H +N    + DLFM+RV  +  
Sbjct: 307 GENKRPGAIAGYLTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKE 366

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+LFSP++V  L +LYG++F  AY  +E      +IK    +SA  L+  +  M++ TG 
Sbjct: 367 WSLFSPNDVVGLEELYGEKFVRAYRAHEA---NPKIKRT-TVSARKLFSDIANMMWSTGE 422

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQF 616
           P+I FKD  N RS  +H+G + +SNLC EI     + E AVCNL +I +         + 
Sbjct: 423 PYILFKDAVNERSNHKHLGTIKNSNLCCEIVQYCDTNEIAVCNLATICVSNFVNVETGEI 482

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAK----------------------------K 648
           D++ +A     A + ++N+ID   + +   +                             
Sbjct: 483 DFEGIADAAGVACKGINNLIDKQNYDLGNEQLMRLADERTEEVVEVNGIKFDAKYNLVSY 542

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR  G+G+ G       L IPY S  A  +A    E I + A+  SV++A+E+G Y
Sbjct: 543 SNLKHRPQGIGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPY 602

Query: 709 S--SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
               +  +   +G    D +      RD           W E+ K+ +  G+ NS   A 
Sbjct: 603 PSYYWDNNTHREGKLQFDFLEGFDRDRDL----THELFNWREVLKKFEKFGINNSVVTAQ 658

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            P+A+ + +    +SI+    N + K    G F ++N  L  +L+   +WD  M+ D++ 
Sbjct: 659 PPSASSSQLNDNVESIEAITSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEA 718

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK 883
           +DGSI NIERIP ++++I+ TA EID   +++  +  Q +IDQ  S N+++    +   +
Sbjct: 719 NDGSIQNIERIPKNIREIYKTAREIDHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQ 778

Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            +         M LKT  YY R   A   +        GK+N             +    
Sbjct: 779 LIMENVILGHKMKLKTGMYYTRGIPAMKQQNF------GKMNFQDKDIGKPVPELV---- 828

Query: 943 SCTSDTECEVC 953
                 +CE C
Sbjct: 829 ------DCEAC 833


>gi|16804194|ref|NP_465679.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes EGD-e]
 gi|46908388|ref|YP_014777.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091824|ref|ZP_00229619.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|47095729|ref|ZP_00233335.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224500180|ref|ZP_03668529.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes Finland 1988]
 gi|224501046|ref|ZP_03669353.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL R2-561]
 gi|226224762|ref|YP_002758869.1| ribonucleoside-diphosphate reductase, subunit alpha [Listeria
           monocytogenes Clip81459]
 gi|254825282|ref|ZP_05230283.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J1-194]
 gi|254826955|ref|ZP_05231642.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL N3-165]
 gi|254831408|ref|ZP_05236063.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 10403S]
 gi|254853281|ref|ZP_05242629.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL R2-503]
 gi|254899144|ref|ZP_05259068.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J0161]
 gi|254912715|ref|ZP_05262727.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J2818]
 gi|254931733|ref|ZP_05265092.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes HPB2262]
 gi|254937042|ref|ZP_05268739.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes F6900]
 gi|255519997|ref|ZP_05387234.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J1-175]
 gi|284802602|ref|YP_003414467.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5578]
 gi|284995744|ref|YP_003417512.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5923]
 gi|300764037|ref|ZP_07074033.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes FSL N1-017]
 gi|16411625|emb|CAD00233.1| lmo2155 [Listeria monocytogenes EGD-e]
 gi|46881659|gb|AAT04954.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47015872|gb|EAL06799.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|47019835|gb|EAL10573.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|225877224|emb|CAS05938.1| Putative ribonucleoside-diphosphate reductase, subunit alpha
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599336|gb|EEW12661.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL N3-165]
 gi|258606641|gb|EEW19249.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL R2-503]
 gi|258609645|gb|EEW22253.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes F6900]
 gi|284058164|gb|ADB69105.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5578]
 gi|284061211|gb|ADB72150.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 08-5923]
 gi|293583288|gb|EFF95320.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes HPB2262]
 gi|293590710|gb|EFF99044.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes J2818]
 gi|293594528|gb|EFG02289.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J1-194]
 gi|300515378|gb|EFK42429.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes FSL N1-017]
 gi|328465962|gb|EGF37143.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes 1816]
 gi|332312606|gb|EGJ25701.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str.
           Scott A]
          Length = 763

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +   P +    AR  L KL ++     +         +    Y        E
Sbjct: 70  IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    DL+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++ K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 738 WNEGLKTTYYVRSN 751


>gi|28198392|ref|NP_778706.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa Temecula1]
 gi|182681035|ref|YP_001829195.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa M23]
 gi|28056462|gb|AAO28355.1| ribonucleoside-diphosphate reductase alpha chain [Xylella
           fastidiosa Temecula1]
 gi|182631145|gb|ACB91921.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylella
           fastidiosa M23]
 gi|307579503|gb|ADN63472.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 830

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 236/807 (29%), Positives = 363/807 (44%), Gaps = 100/807 (12%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203
           I  + G   + F+  RLE  ++        +         +      D ++  DL   LI
Sbjct: 65  ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             + + ++   P +    AR  L +L +           +   ++    Y  +       
Sbjct: 125 REAESRVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
            +  + +  +  S    +L+     +  ERD  F Y GL +L  RY          E+PQ
Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDTSRGVFELPQ 236

Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             ++ +A+ L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K 
Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM
Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542
           + V +   W LF P EV  +   Y ++F  E        +          E    + + A
Sbjct: 417 EAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------- 592
           + ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N           
Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536

Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641
                     + +  VCNL SINL             D L   I   VR+LDNVID+N  
Sbjct: 537 SGNQIVTTKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A  +N  +RAIGLG  G+   L    I + S EA + +D   E I++  I AS+EL
Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDALYERINYLTIRASMEL 656

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G Y+ F GS W  G              +       +   W EL  +V   G+RN+
Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A+AP  + A I G + SIDP Y   Y +        VV                   
Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP----------------- 745

Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                          +  D    +   A+++D    I   +RRQ+ +DQ+ S N Y+   
Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                L  ++  AW  GLKTTYY+RS 
Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818


>gi|154250960|ref|YP_001411784.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum
           lavamentivorans DS-1]
 gi|154154910|gb|ABS62127.1| ribonucleoside-diphosphate reductase, alpha subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 198/682 (29%), Positives = 296/682 (43%), Gaps = 94/682 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + + RD      G   L DRY +       E  Q  F RVA      +      A   Y+
Sbjct: 62  VDHGRDALLTEFGKATLRDRYLM-----PGESYQDMFARVAS--FYADKGDAGHAQRLYD 114

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL    D L GI G   EN  LA   GG+G+ W
Sbjct: 115 YISKLWFMPATPVLSNGGTQRGLPISCFLNEASDSLDGIVGLWNENVWLAAKGGGIGSYW 174

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G NGK+ G+IPF++V +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 175 GNLRSIGETVGG-NGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLPIDHPEIEEFME 233

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +A W L SP +                 
Sbjct: 234 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVEADAEWQLKSPKD----------------- 276

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V + +SA +LW ++LT   ETG P+I +KD  N   P+ H      V 
Sbjct: 277 ----------RSVQKTVSARSLWIRLLTSRIETGEPYIIYKDTVNNARPEHHKLAGLEVK 326

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC EITL +  ++          L +       ++    + I   +R LDNV    I
Sbjct: 327 TSNLCAEITLPTGIDQHGEQRTAVCCLSSLNLETYNEWQDHPTIIEDVMRFLDNVLQDFI 386

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK +    R++GLG+MGF S L    IP+    A          I     +
Sbjct: 387 DRAPDDMRRAKYAAMRERSVGLGVMGFHSYLQANMIPFEGVMAKVWNKRMFARIKEGVDA 446

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ERGA                                                 
Sbjct: 447 ASKKLAEERGACP------------------------------------------DAAEY 464

Query: 757 GMR--NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G     SN  AIAPTA+I+ I G  S  I+P   N +    +SG F V N  L   L+ +
Sbjct: 465 GFNERFSNKTAIAPTASISIITGGTSPGIEPIAANSFTHKTLSGSFNVRNRHLTKLLELK 524

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
              D+   S +  + GS+ +++ + D+ K +  TAFE+D  W+IE A  R   +DQAQS+
Sbjct: 525 GRNDDDTWSSIVVNGGSVQHLDFLSDEEKDVFKTAFELDQRWVIEHAGDRAPLVDQAQSV 584

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L  +   + L  ++  AW  G+K+ YY RS S    EK+ +  +             
Sbjct: 585 NLFLAADVHKRDLHKLHFMAWQHGVKSLYYCRSLSIQRAEKAEVVSLLP-----GKVLDV 639

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
            +   +   +      EC  CQ
Sbjct: 640 LTLDQVAAEAQSNDYEECLACQ 661


>gi|27904670|ref|NP_777796.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605262|sp|Q89AS4|RIR1_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|27904067|gb|AAO26901.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 761

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 186/786 (23%), Positives = 325/786 (41%), Gaps = 69/786 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   +G +   N  ++  ++  A  GL+++S   V  ++    Y+ +  + +   +I
Sbjct: 4   MLFVTKRNGKIELINLDKIHRVLNWAAKGLENISISQVALKSRIQFYNNIKTTIIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI +  P+Y  + AR  +  LR++                      ++    I+ 
Sbjct: 64  KAAADLISENSPDYQYMAARLTIFHLRKKAFGQFNPPNL-----------YDHVKNMIKL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L       D + + + +K+ RD  F Y  ++ L  +Y     +     E  Q  
Sbjct: 113 EKYDQHLLNDYPKQDFLIMNSFIKHRRDMNFSYAAVKQLEGKYLIQNRVTKKIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ ++  L        + K    FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILISACLFSKYPNETRMKYIKNFYDAISTFKISLPTPIMAGLRTPTRQFSSCVLIESED 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  I               G+G +   +R LG+ I   +    G IPF K       + 
Sbjct: 233 NLNSINATTSAIVKYVSQRAGIGINAGRIRALGSPIRNGDTLHTGCIPFYKHFQSAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH ++E  L L+ N G +  R   M+ +  +  L  +R+     
Sbjct: 293 SQGGVRGGAATIFYPIWHFEIESLLVLKNNRGIEENRVRHMDYSVQLNKLMYQRLILGEH 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V +L+D +    ++FE  Y  YE      +    +K+ A  L+  M+     
Sbjct: 353 ITLFSPSDVPNLYDSFFNNQEKFERLYIKYE----NDKTIRKKKVKASYLFSLMMQERTS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG  +I   D CN  S        +  SNLC EITL + + +      G I+L    A N
Sbjct: 409 TGRIYIQNVDHCNSHSAFNPKIAPIRQSNLCLEITLPTKALQDVHDKNGEISLCTLSAIN 468

Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + + L+      VR LD+V+D   + I  AKKS  + R +G+G++ F   L    
Sbjct: 469 LGSLNNLNDLSKLSNLIVRALDSVLDYQEYPILSAKKSALSRRTLGIGVINFAYYLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+   A  +   + E I +H ++AS  LAQE+GA   F  + + +G+ PID+     +
Sbjct: 529 VRYSDGSANNLTHRTFEAIQYHLLNASCVLAQEKGACHWFSHTNYYKGILPIDTYKKNVD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                  N    L W+ L+K++K  G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 EI----CNEPLHLDWELLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISI 644

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K++  G    V         +R   +  ++ ++  + G +                    
Sbjct: 645 KASKDGMLRQVVPEY-----KRLKNNYELLWNIPNNTGYLQ------------------- 680

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
                   AS  QK++DQ+ S N          ++   ++L      A+ +GLKT YY  
Sbjct: 681 -------LASIMQKFVDQSISANTNYDPKLFPNNKIPMQQLILDLLTAYKLGLKTLYYQN 733

Query: 905 SRSATS 910
           +R   S
Sbjct: 734 TRDGAS 739


>gi|307571741|emb|CAR84920.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes L99]
          Length = 757

 Score =  420 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 4   YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 63

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +   P +    AR  L KL ++     +         +    Y        E
Sbjct: 64  IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 118

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    DL+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 119 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 178

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++ K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 179 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 238

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 239 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 298

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 299 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 358

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 359 WYLFDPHEVKAKKGWYLQDFYDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 418

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 419 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 478

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 479 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 535

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 536 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 595

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 596 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 641

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 642 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 675

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 676 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 731

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 732 WNEGLKTTYYVRSN 745


>gi|16801323|ref|NP_471591.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           innocua Clip11262]
 gi|16414771|emb|CAC97487.1| lin2259 [Listeria innocua Clip11262]
          Length = 763

 Score =  420 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +   P +    AR  L KL ++     +         +    Y        E
Sbjct: 70  IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    DL+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++ K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 738 WNEGLKTTYYVRSN 751


>gi|217963684|ref|YP_002349362.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes HCC23]
 gi|290893102|ref|ZP_06556090.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J2-071]
 gi|217332954|gb|ACK38748.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           monocytogenes HCC23]
 gi|290557264|gb|EFD90790.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit
           NrdA [Listeria monocytogenes FSL J2-071]
          Length = 763

 Score =  420 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +   P +    AR  L KL ++     +         +    Y        E
Sbjct: 70  IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    DL+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++ K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 738 WNEGLKTTYYVRSN 751


>gi|319785672|ref|YP_004145147.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464184|gb|ADV25916.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 814

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 247/805 (30%), Positives = 369/805 (45%), Gaps = 89/805 (11%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSET--YKNMYDGLSESDLETALI 203
           I  + G   ++F+  RLE  ++   +G   +           +      LS  DL   LI
Sbjct: 54  ITKEAGNRRLAFDPARLERSIDVIAAGFPQLEIGDYKRAVLGFVARKPALSADDLVDHLI 113

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +   ++   P + +  AR  L +L +      +    +         Y        + 
Sbjct: 114 REAEARVDLTAPEWERFAARLYLRRLYKRASRNRFYDAGQKY-----GSYVGLQESLADR 168

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFF 321
           G+ +  +  +    +L      ++ ERD  F Y GL +L  RY          E+PQ  +
Sbjct: 169 GIYSNDILRAYSKEELEEAGRMIEPERDKLFAYNGLYLLATRYLATDTARNVYELPQERW 228

Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           + +A+ L  +E  +E+R     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 229 LTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLQNAGKVGGQLSSCFIDTVDD 288

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K  GG+G     VR  GA I G    S GV+P++K  N+TAV+V
Sbjct: 289 SLQGIYDSNTDIARVSKGGGGVGAYLGYVRAAGAPIRGVPNSSGGVVPWIKQLNNTAVSV 348

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGAV  YL+ WH D+E FLDLR N GD R R HD+ TA  IPDLFM+ V +   
Sbjct: 349 DQLGQRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDLFMEAVERRGD 408

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E ++ +  ++         R + A+ L+++++  
Sbjct: 409 WYLFDPHEVKQAKGWYLQDFYDERRGEGSFRSKYQELVEDGRIGRRTVKAIDLFKRIMVS 468

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N ++P +H G V+SSNLCTEI  N S                   
Sbjct: 469 QLETGNPFMFYRDEVNRKNPNKHCGTVYSSNLCTEILQNQSPTRMIQEVISGNQIVTTRQ 528

Query: 596 --ETAVCNLGSINLLA--HFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             +  VCNL SINL      A+ Q D   D L   +   VR+LDNVID+N   + +A  +
Sbjct: 529 AGDFVVCNLSSINLGRAVVQADGQGDLISDVLERLVPIQVRMLDNVIDLNQLPVPQATIT 588

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +RAIGLG  G+   L L  I + S EA + +D   E I+  AI AS+ELA+E+G Y 
Sbjct: 589 NRRYRAIGLGTFGWHHLLALKGIHWDSKEAEDYSDALYERINRLAIQASMELAKEKGTYP 648

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F GS W  G                      +   W +L  +V   G+RN   +A+AP 
Sbjct: 649 AFPGSDWHTG--------------AYFRERGYNSPEWLDLAAQVAVNGLRNGWLLAVAPN 694

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            + A I G S SIDP Y   Y +        V                            
Sbjct: 695 MSTAQIAGSSASIDPVYSAFYYEEKKDYRRPVAAP------------------------- 729

Query: 830 SIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
                  +  +    +   A+++D    +   +RRQ+ +DQA S NLY+        L  
Sbjct: 730 ------GLSLETWPYYEKGAWKVDQFASVRQNARRQRHVDQAISFNLYVPSSIRASVLLE 783

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912
           ++ + W  GLKTTYY+RS      E
Sbjct: 784 LHLEGWRQGLKTTYYVRSNDIDVAE 808


>gi|262277046|ref|ZP_06054839.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha
           proteobacterium HIMB114]
 gi|262224149|gb|EEY74608.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha
           proteobacterium HIMB114]
          Length = 646

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/682 (29%), Positives = 293/682 (42%), Gaps = 103/682 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G+  L DRY         E  Q  F RVA   A    +    A   YN
Sbjct: 56  IDRSRDANLTDFGMATLTDRYLSEN-----ESYQDLFARVAATYA----DDNLHAQRLYN 106

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N+GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 107 YISKLWFMPATPVLSNAGTSRGLPISCFLNEAADSLDGIVNLWSENVWLAAKGGGIGSYW 166

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +    GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 167 GNLRAIGEKVGRV-GKTSGIIPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIE 225

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  RR  +++    + D FM+ V  +A W L SP +                 
Sbjct: 226 MRRPTGGDPNRRALNLHHGVLVTDAFMRAVETDADWPLKSPYD----------------- 268

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   I A  LW ++LT   ETG P+I + D  N   PQ H      V 
Sbjct: 269 ----------GTVQSTIKARNLWIRLLTARVETGEPYIVYIDTVNRMIPQHHKLAGLTVK 318

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +SNLC+EITL +  ++          L +    N  ++      I   +R+LDNV+    
Sbjct: 319 TSNLCSEITLPTGIDKYGKDRTAVCCLSSLNLENYDEWKDEPGFIEDIMRMLDNVLSDFI 378

Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +   ++ K    S    R++GLG+MGF S +    IP  S  A     +  +FI     +
Sbjct: 379 NRAPESFKDAKYSAMRERSVGLGVMGFHSYMQRHMIPIESVMAKVWNKKMFQFIDKEVNA 438

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ERG                                                  
Sbjct: 439 ASKKLAEERGPCP------------------------------------------DAAEY 456

Query: 757 GMR--NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G+    SN  AIAPTA+I+ ICG  S  I+P   N Y    +SG F V N +L   L++ 
Sbjct: 457 GINERFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKKILQKY 516

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           +     + S +  + GS+ +++ +  D K +  TAFEID  WLI+ ++ R  +I QAQSL
Sbjct: 517 NQDTNEVWSSITTNQGSVEHLDFLSQDEKDVFKTAFEIDQRWLIDHSADRTPYISQAQSL 576

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           N+++  +   K L  I+ QAW  GLK+ YY RS+S    E             V  +   
Sbjct: 577 NVFIPADIHKKDLHQIHYQAWKKGLKSLYYCRSKSIQRAE------------VVNTSFAK 624

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +               EC  CQ
Sbjct: 625 TKKQKSQENQQTNDYEECLSCQ 646


>gi|71901121|ref|ZP_00683228.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|71729126|gb|EAO31250.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
          Length = 830

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 236/807 (29%), Positives = 363/807 (44%), Gaps = 100/807 (12%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203
           I  + G   + F+  RLE  ++        +         +      D ++  DL   LI
Sbjct: 65  ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             + + ++   P +    AR  L +L +           +   ++    Y  +       
Sbjct: 125 REAESRVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQ 318
            +  + +  +  S    +L+     +  ERD  F Y GL +L  RY          E+PQ
Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASCGVFELPQ 236

Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             ++ +A+ L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K 
Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM
Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542
           + V +   W LF P EV  +   Y ++F  E        +          E    + + A
Sbjct: 417 EAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------- 592
           + ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N           
Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536

Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641
                     + +  VCNL SINL             D L   I   VR+LDNVID+N  
Sbjct: 537 SGNQIVTTKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A  +N  +RAIGLG  G+   L    I + S EA + +D   E I++  I AS+EL
Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDALYERINYLTIRASMEL 656

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G Y+ F GS W  G              +       +   W EL  +V   G+RN+
Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A+AP  + A I G + SIDP Y   Y +        VV                   
Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP----------------- 745

Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                          +  D    +   A+++D    I   +RRQ+ +DQ+ S N Y+   
Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                L  ++  AW  GLKTTYY+RS 
Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818


>gi|16330926|ref|NP_441654.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803]
 gi|3914655|sp|P74240|RIR1_SYNY3 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|1653420|dbj|BAA18334.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803]
          Length = 767

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 215/798 (26%), Positives = 364/798 (45%), Gaps = 86/798 (10%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            A + +   +    +++++  DG+    N  ++  +V+ AC GL +V+S  + +     +
Sbjct: 16  DAHAGTSQGSHQGHRIQVIRRDGSSTPLNIGKIRAVVDWACLGL-EVNSIALEAGLTTRL 74

Query: 190 YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
            +G+S  +++  LI  +  +    EP++  V  R  +  L ++ L               
Sbjct: 75  REGISTREIQDNLISCALEMCSPNEPDWRYVAGRLHVWSLWKDTL---------VRRGYQ 125

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
              Y       +  G     +     + +L      +  + D  ++Y G  +L  RY L 
Sbjct: 126 YGQYLRTVQTKVTNGEYDSRILT-YSEGELQEAGCWINSDWDTDYDYAGAVLLTSRYLL- 183

Query: 309 INGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
                 E+PQ   +  A+ LA  E    + + A  FY  +++     +TP L N      
Sbjct: 184 ----PNELPQEALLTCALLLASVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGG 239

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            L+SCF+  + D+L  IFG +   A ++K  GG+G + + +R  G+ + G    S GVIP
Sbjct: 240 SLTSCFIVAMEDNLESIFGEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIP 299

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           + K+ NDTA+AVNQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     +P
Sbjct: 300 WTKLLNDTAIAVNQGGRRAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILP 359

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           D FM+RV     WTL  P EV +       +L+G++FE AY   E       I ++++I+
Sbjct: 360 DEFMRRVINKEDWTLVDPYEVREKMGIELAELWGEQFEGAYREIE-SNLDTTITLYKRIN 418

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVC 600
           A  L+++++    ETG P+++FKD  N  +P +H+G +  +NLC E   N +  ++   C
Sbjct: 419 ARELFKQIMRTQVETGMPYLSFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCC 478

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NL         D   +A   + AVR+LDN I++       AK  N+ +R IG+G 
Sbjct: 479 NLVSLNLANL------DLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGA 532

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    L    + Y     +       E I +    +S+ELA+ERGAY +F GS W +G+
Sbjct: 533 MGLADWLAKRRLNYDELADIN---RLFEEIGYWCTQSSMELAKERGAYPAFPGSDWQKGL 589

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                  + ++       N      W++L   ++T G+RNS+  AIAP  + + + G + 
Sbjct: 590 L------IGSKPVSWFQANAAKPERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTA 643

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P Y   +      G   +   F+ N       W                     P++
Sbjct: 644 SILPVYSRFFYDKWAKGTVPIAPPFIGN-----CFW-------------------FYPEN 679

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEP-----SGKKLDF 887
                 T   +D   ++++ +  Q+W D   S+    NL       E      + K +  
Sbjct: 680 -----KT---MDQRKVVKAVAAIQQWTDTGISMELLFNLNAGIYFPEEPERSLNAKDIFD 731

Query: 888 IYRQAWLMGLKTTYYLRS 905
               AW  G K  YY+R+
Sbjct: 732 TLVMAWEAGCKAIYYIRT 749



 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKG--VQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           MHP+         A  + A       +G  +QVI+R+G  T  +  KI   +  A + +E
Sbjct: 1   MHPTLISAPISSSANDAHAGTSQGSHQGHRIQVIRRDGSSTPLNIGKIRAVVDWACLGLE 60

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQD 100
               +           LT +    +             +IQD
Sbjct: 61  VNSIALEA-------GLTTRLREGISTR----------EIQD 85


>gi|58040421|ref|YP_192385.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconobacter
           oxydans 621H]
 gi|58002835|gb|AAW61729.1| Ribonucleoside-diphosphate reductase alpha chain [Gluconobacter
           oxydans 621H]
          Length = 658

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 203/682 (29%), Positives = 296/682 (43%), Gaps = 92/682 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L +RY L       E  QA F RVA             A   Y+
Sbjct: 57  VDRSRDSLLTDFGKATLNNRYLL-----PGEDYQALFARVASYYGA----DAGHAQRIYD 107

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI G   EN  LA   GG+G+ W
Sbjct: 108 YISRHWFMPATPVLSNGGTERGLPISCFLNEAEDSLSGIVGLWNENVWLASKGGGIGSYW 167

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G +I   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH +VEEF++
Sbjct: 168 GNLRSIGENIGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEVEEFVE 226

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 227 MRRPTGGDPNRKALNLHHGVLVTDAFMRAVENDEEWALLSPKD----------------- 269

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                         RK+SA  LW ++LT   E G P+I + D  N   P+ H      V 
Sbjct: 270 ----------HSTIRKVSARGLWIRILTARMEQGEPYIIYSDHVNRARPEHHKLAGLEVK 319

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC EITL +  +           L +       ++      I   +  LDNV    I
Sbjct: 320 TSNLCAEITLPTGIDHHGKNRTAVCCLSSLNLETWDEWKDDPQFIEDVMLFLDNVLQDFI 379

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     + +AK +    R++GLG+MGF S L    IP+ S  A     +  E I   A +
Sbjct: 380 DRAPDDMARAKYAAARERSVGLGVMGFHSFLQARMIPFESVMAKVWNRKIFEHIRKQADA 439

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA+ RG                                                  
Sbjct: 440 ASKHLAEVRGPCP------------------------------------------DAAEY 457

Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G     S+ +AIAPTA+I+ I G  S  I+P   N++++  +SG F+V N  L   L++R
Sbjct: 458 GFMERFSHKLAIAPTASISIITGNASPGIEPISANVFLQKTLSGSFSVRNRHLKKILEER 517

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               + + S +  + GS+ N++ +  D K +  TAFE+D  W++E A+ R  +I QAQS+
Sbjct: 518 GYDTDEVWSAITLNKGSVQNLDFLTQDEKDVFKTAFELDQRWVVEHAADRAPFICQAQSV 577

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L  +   + L  I+ QAW  GLK+ YY RS S    +  +   V   +      +  
Sbjct: 578 NLFLPADVHKRDLHQIHFQAWKKGLKSLYYCRSLSVQRADAVSNLAVKSDILEDEKYEAT 637

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
           +     G   S     EC  CQ
Sbjct: 638 AQAAPRGE-MSSGDYEECLSCQ 658


>gi|87198299|ref|YP_495556.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133980|gb|ABD24722.1| Ribonucleoside-diphosphate reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 667

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/678 (29%), Positives = 302/678 (44%), Gaps = 96/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + ++ A   Y+ 
Sbjct: 77  DDSRDVNLTDFGKDTLDDRYLL-----PGEKYQDLFARVADAYA----DDQEHAQRLYDY 127

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 128 ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVATWNENVWLASRGGGIGTYWG 187

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 188 KVRGIGESVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFLEI 246

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V   A + L SP +                   
Sbjct: 247 RKPSGDFNRKALNLHHGVLLTDEFMEAVRDGAEFHLRSPKD------------------- 287

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 288 --------GSVRSTVDARSLFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTS 339

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +       +++     +   +R LDNV    ID 
Sbjct: 340 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLETWDEWNGDKRFVEDVLRFLDNVLQDYIDR 399

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++G+G+MGF S L    I + S  A     +  + ++  A  AS
Sbjct: 400 APDEMARAKYSAARERSVGMGVMGFHSFLQKKGIAFESAMAKAWNLKMFKHVAAKADEAS 459

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LAQERGA                                       D  +  V     
Sbjct: 460 ILLAQERGACP-------------------------------------DAAEMGVMQ--- 479

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L  +    
Sbjct: 480 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLQKLLADKSKDS 539

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             + + +  H GS+ +++ +  + K ++ T+FEID  WL+E A+ R  +IDQAQSLNLY+
Sbjct: 540 TNVWNSILEHGGSVQHLDFLSVEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLNLYI 599

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ QAW  G+K+ YYLRS+S                      D  +   
Sbjct: 600 PADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA----------GFAGGVEADNTAEAP 649

Query: 937 SLGIPSSCTSDTECEVCQ 954
            + + ++ T   EC  CQ
Sbjct: 650 KIELATAETDYEECLACQ 667


>gi|206900775|ref|YP_002251097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus thermophilum H-6-12]
 gi|206739878|gb|ACI18936.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus thermophilum H-6-12]
          Length = 751

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 178/638 (27%), Positives = 287/638 (44%), Gaps = 83/638 (13%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------E 341
           R        L IL  RY      G+ IE P+  F RVA  +A  +     +A        
Sbjct: 2   RKVELTEQALMILEKRYLKKDEKGNVIETPEEMFERVAETIAKVDLIYNPKADLEAIKNT 61

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+++ S  F+ ++PTL N+G    QLS+CF+  + D L  IF  L+  A++ +  GG G
Sbjct: 62  FYDMMVSLEFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTG 121

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G  +  T G + G + F+KV +     + QGG R+GA    L   H D+EE
Sbjct: 122 FSFSKLRPKGDIVKTTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRIDHPDIEE 181

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  +    D      + N +  I D FM+ V ++  + L +P                 
Sbjct: 182 FITCK----DQEGVLSNFNISVAITDSFMEAVLKDEDFPLINPR---------------- 221

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V RK+ A  L+  ++   ++ G P + F D  N ++P   VG + S
Sbjct: 222 -----------NKEVVRKVKARDLFDLIVKQAWKNGEPGVVFIDEINRKNPTPEVGEIES 270

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL           + D+DKL  T+  AV  LDNVID
Sbjct: 271 TNPCGEQPLLPF----ESCNLGSINLGKMLKRVGEKYEIDWDKLKITVHNAVHFLDNVID 326

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + ++  ++    +R IGLG+MGF   L  L +PY + EA +IA+  M FI   A  A
Sbjct: 327 ANFYPLKPIEEMTKANRKIGLGVMGFYDLLVRLEVPYNTKEARDIAENIMSFIQREASEA 386

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S +LA+ERG + ++  S++                                         
Sbjct: 387 SQKLAEERGVFPNWDKSIYKDMGLK----------------------------------- 411

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RN+    IAPT +I+ I   S  I+P +   + +    G++  V       L + D++ 
Sbjct: 412 LRNATLTTIAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKEDIYS 471

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E +I  +   +G+I +++ IP+ LK++  TA +IDP   +   +  QK++D A S  + L
Sbjct: 472 EDLIEKIV-QEGTIQHMDEIPERLKRLFVTALDIDPEDHVLMQAAFQKYVDNAVSKTVNL 530

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +  + + +  +Y  A+ + LK     R +S  S   S
Sbjct: 531 RESATLEDIRRVYLMAYDLKLKGITVYRDKSRASQVLS 568


>gi|15837798|ref|NP_298486.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa 9a5c]
 gi|9106168|gb|AAF84006.1|AE003954_3 ribonucleoside-diphosphate reductase alpha chain [Xylella
           fastidiosa 9a5c]
          Length = 830

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 237/807 (29%), Positives = 363/807 (44%), Gaps = 100/807 (12%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203
           I  + G   + F+  RLE  ++        +         +      D ++  DL   LI
Sbjct: 65  ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             +   ++   P +    AR  L +L +           +   ++    Y  +       
Sbjct: 125 REAEARVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
            +  + +  +  S    +L+     +  ERD  F Y GL +L  RY          E+PQ
Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASRGVFELPQ 236

Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             ++ +A+ L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K 
Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM
Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542
           + V +   W LF P EV  +   Y ++F  E        +          E    + + A
Sbjct: 417 EAVERRGDWYLFDPYEVKCVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595
           + ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N +         
Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536

Query: 596 ------------ETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641
                       +  VCNL SINL             D L   I   VR+LDNVID+N  
Sbjct: 537 SGNQIVTTKQAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A  +N  +RAIGLG  G+   L    I + SPEA + +D   E I++  I AS+EL
Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSPEAEQYSDALYERINYLTIRASMEL 656

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G Y+ F GS W  G              +       +   W EL  +V   G+RN+
Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A+AP  + A I G + SIDP Y   Y +        VV                   
Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP----------------- 745

Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                          +  D    +   A+++D    I   +RRQ+ +DQ+ S N Y+   
Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                L  ++  AW  GLKTTYY+RS 
Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818


>gi|294664799|ref|ZP_06730123.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605430|gb|EFF48757.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 836

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 236/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RLE  +++  +    +         +
Sbjct: 49  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 108

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 109 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 160

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 161 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 220

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 221 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 280

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 281 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 340

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 341 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 400

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 401 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFR 460

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 461 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 520

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 521 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 580

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 581 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 640

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 641 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 686

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 687 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 746

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  +    +   A+++D    + 
Sbjct: 747 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 775

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 776 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 824


>gi|315304278|ref|ZP_07874627.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           ivanovii FSL F6-596]
 gi|313627357|gb|EFR96141.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           ivanovii FSL F6-596]
          Length = 763

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 243/794 (30%), Positives = 369/794 (46%), Gaps = 85/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +     +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYPADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +   P +    AR  L KL ++     +         +    Y        E
Sbjct: 70  IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    +L+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 125 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 185 WLTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 245 SLQSIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPGL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 738 WNEGLKTTYYVRSN 751


>gi|325914791|ref|ZP_08177128.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325538984|gb|EGD10643.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 833

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 237/829 (28%), Positives = 373/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A + H+++         I  + G   I F ++RL   +++  +    +         +
Sbjct: 46  RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEAERLNRAIDQIHAEFPQLDVADYKRSVF 105

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 106 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 157

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 158 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 217

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    N     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 218 LATRYLATDNSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 277

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 278 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 337

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 338 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGD 397

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 398 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 457

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 458 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 517

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 518 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGAD 577

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 578 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 637

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 638 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 683

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 684 DYNSPQWLELSAQVSVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 743

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  +    +   A+++D    + 
Sbjct: 744 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 772

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 773 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 821


>gi|58424691|gb|AAW73728.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 839

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 237/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RLE  +++  +    +         +
Sbjct: 52  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 111

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 112 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 163

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 164 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 223

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 224 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 283

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 284 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 343

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 344 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 403

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 404 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFR 463

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 464 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 523

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 524 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 583

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 584 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 643

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 644 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 689

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 690 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 749

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  D    +   A+++D    + 
Sbjct: 750 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 778

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 779 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 827


>gi|114798532|ref|YP_759596.1| ribonucleotide-diphosphate reductase subunit alpha [Hyphomonas
           neptunium ATCC 15444]
 gi|114738706|gb|ABI76831.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 593

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 193/678 (28%), Positives = 293/678 (43%), Gaps = 102/678 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    +  +     Y+ 
Sbjct: 9   DPSRDSLLTDFGKKTLDDRYLL-----PGETYQDMFARVATAYA----DDAEHGQRIYDY 59

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N G       SCFL  V D L  I     EN  LA   GG+G  W 
Sbjct: 60  ISRLWFMPATPVLSNGGADRGLPISCFLNQVGDSLDDIVETWTENVWLASNGGGIGTYWG 119

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  +   NG++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 120 NVRSIGEKVGQ-NGQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEI 178

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R++ +++    I D FM+ V  +  + L SP                     
Sbjct: 179 RKTSGDFNRKSLNLHHGINITDAFMEAVRNDEEFGLISPKS------------------- 219

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                    +V + ++A  LW+K+L +  +TG P++ F D  N   P         V  S
Sbjct: 220 --------GEVLKYVNARKLWQKLLELRMQTGEPYLLFTDTVNNALPAHQKRLGLKVTQS 271

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLC+EITL +  +           L +  A    ++ K    +    R LDNV++     
Sbjct: 272 NLCSEITLPTGVDHRGTDRTAVCCLSSVNAETFLEWSKEPMFLEDIFRFLDNVLEDFIQR 331

Query: 643 IEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                     S    R++GLG+MGF S L  +++   S  A  +  +  + I   A +AS
Sbjct: 332 APPEMARAVYSAKRERSVGLGVMGFHSFLQAMNVSMESATAKSLNLKIFKHIRQGADAAS 391

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V+LA+ERG                           D   +   +R               
Sbjct: 392 VKLAKERGPCE------------------------DARDVGMMAR--------------- 412

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
             SN MA+APTA+I+ ICG  S  I+P   N+Y    +SG FTV N  L   L  + L  
Sbjct: 413 -FSNKMAVAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNQQLETLLDTKGLNT 471

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             + + +  H+GS+ +++ +    K +  TAFE+D  W+IE A+ R  +I Q+QSLNL+L
Sbjct: 472 NEIWTSILEHEGSVQHLDCLDAHEKDVFKTAFELDQRWIIELAADRTPFICQSQSLNLFL 531

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             + +   L  ++  AW  GLK+ YY RS+S                        +    
Sbjct: 532 PGDINKWDLHMLHWTAWERGLKSLYYCRSKSVQRA----------------AFAGSEKAE 575

Query: 937 SLGIPSSCTSDTECEVCQ 954
           +  +  + T   EC  CQ
Sbjct: 576 ASTLEVARTDYDECLACQ 593


>gi|294625676|ref|ZP_06704298.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600045|gb|EFF44160.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 832

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 236/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RLE  +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFR 456

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 636

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  +    +   A+++D    + 
Sbjct: 743 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820


>gi|166710316|ref|ZP_02241523.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 832

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 237/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RLE  +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQVHAEFPQLDVADYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYM 276

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 456

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 636

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  D    +   A+++D    + 
Sbjct: 743 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820


>gi|78049717|ref|YP_365892.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325927515|ref|ZP_08188753.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           perforans 91-118]
 gi|78038147|emb|CAJ25892.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325542108|gb|EGD13612.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           perforans 91-118]
          Length = 832

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 235/829 (28%), Positives = 368/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RL   +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFR 456

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 636

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  +    +   A+++D    + 
Sbjct: 743 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820


>gi|322418582|ref|YP_004197805.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
 gi|320124969|gb|ADW12529.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
          Length = 745

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/662 (27%), Positives = 305/662 (46%), Gaps = 81/662 (12%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345
                L +L  RY      G  +E     F RVA  +A  ++  +K+      + +FYN+
Sbjct: 13  LTKNALTVLEKRYLKRDQTGKTLETAADMFRRVATAIAQADSVFDKKADISALSDKFYNM 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++F F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++
Sbjct: 73  MTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  
Sbjct: 133 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMC 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +    +D+R+ ++ N +  I + FMK V  +  + L +P +                   
Sbjct: 193 K----NDQRQLNNFNISVGITEEFMKAVDADKDYNLVNPRD------------------- 229

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    K    ++A  ++ +++   +E G P I F D  N  +P  H+G + S+N C
Sbjct: 230 --------KKQAGTLNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + + D+DKL   ++TAV  LDNVI++N + +E+
Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVVHGKVDWDKLKEVVQTAVHFLDNVIEVNNYPLEQ 337

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +   ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+     AS +LA+ R
Sbjct: 338 IDQMTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGKIASRKLAKSR 397

Query: 706 GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           GA+ +FKGS++   G  P                                   +RN+   
Sbjct: 398 GAFPNFKGSIYDAPGADP-----------------------------------IRNATVT 422

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   +V+  M  +  V VN       K +  + E ++  
Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSFVRQVMDKNILVEVNPLFEKIAKDQGFYSEELMQR 482

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
           +  H G++ +I  IP+ ++ +  TA +I P   I   +  Q+  D A S  +    E + 
Sbjct: 483 IAEH-GTVQDISAIPEGVRDVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPREATI 541

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           + ++ +YR A+    K     R  S      S  K  + K+ A PV            P 
Sbjct: 542 EDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAKIAAPPVHIEEKRGAKRERPK 601

Query: 943 SC 944
           + 
Sbjct: 602 AL 603


>gi|84622096|ref|YP_449468.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|161899022|ref|YP_199113.2| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84366036|dbj|BAE67194.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 832

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 237/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RLE  +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFR 456

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 636

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  D    +   A+++D    + 
Sbjct: 743 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820


>gi|11499254|ref|NP_070492.1| ribonucleotide-diphosphate reductase subunit alpha [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648891|gb|AAB89584.1| ribonucleotide reductase (nrd) [Archaeoglobus fulgidus DSM 4304]
          Length = 752

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/626 (27%), Positives = 286/626 (45%), Gaps = 79/626 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNL 345
                    +L  RY L    G+ IE P+    RVA  +A  E       E+ A +F+ L
Sbjct: 1   MKLNRTAETVLRKRYLLKDDEGNVIETPEEMCWRVARAIAKAEENYGNNAEEWAEKFFKL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           L    FM ++PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++
Sbjct: 61  LWEQKFMPNSPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  T G + G + F+K+ +     + QGG+R+GA    L   H D+EEF+  
Sbjct: 121 RLRPKGDIVKSTMGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLNVHHPDIEEFIKA 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     +     + N +    D FM+ + ++  + L +P                     
Sbjct: 181 KW----EEGVLRNFNISVAATDAFMEALKKDDDYDLINPRT------------------- 217

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V R++ A  ++  ++   +  G P + F D  N  +P  HVG + ++N C
Sbjct: 218 --------GEVVRRVPARKIFNLIVEGAWRNGEPGMIFIDTINRFNPTPHVGQIEATNPC 269

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + + D+D L   +  AVR LD+VID+N + I +
Sbjct: 270 GEQPLLPY----ESCNLGSINLAKFVKDGEIDWDGLREVVWIAVRFLDDVIDVNSYPIPE 325

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++    +R IGLG+MG+   L LL+IPY S EA+++A++ M+FI   +  AS +LA+ER
Sbjct: 326 IEQMTKANRKIGLGVMGWADMLFLLNIPYDSDEAIQLAEKVMKFIQEESHRASQQLAEER 385

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + ++KGS+W                +  + M   +                       
Sbjct: 386 GVFPNWKGSVW---------------EKKGIKMRNATTTTIAPTGTI------------- 417

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISD 823
                  + I G S  I+P +   Y ++N+    +F  +N      L++R L+ + +I  
Sbjct: 418 -------SIIAGCSSGIEPIFALAYKRTNILDGEEFFEINEIFEEVLRRRGLYTDELIEK 470

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
           +    GSI  IE IP+D++++   A +I P W +   +  QK+ D A S  + +    + 
Sbjct: 471 VAE-KGSIQEIEEIPEDIRRVFKCALDISPEWHVRMQAAFQKYTDNAVSKTINMPNSATR 529

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSA 908
           K ++  +  A+ +G K     R  S 
Sbjct: 530 KDVEKAFLLAYELGCKGITVYRDGSR 555


>gi|21244792|ref|NP_644374.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21110490|gb|AAM38910.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 832

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 235/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RL+  +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLDRAIDQIHAEFPQLDVADYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFR 456

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 636

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  +    +   A+++D    + 
Sbjct: 743 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820


>gi|296116312|ref|ZP_06834928.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977131|gb|EFG83893.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 620

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/682 (30%), Positives = 295/682 (43%), Gaps = 92/682 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L +RY L   G      Q  F RVA      E      A   Y+
Sbjct: 19  VDRSRDALLTAFGKATLDNRYLLPGEGY-----QDLFGRVASYYGADEG----HAQRLYD 69

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 70  YISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 130 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 188

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ TG D  R+  +++    I D FM+ V  +  W L SP +                 
Sbjct: 189 LRRPTGGDPNRKALNLHHGILISDAFMRAVAADEEWALLSPKD----------------- 231

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                         RK+SA +LW ++LT   E G P+I + D  N   PQ H      V 
Sbjct: 232 ----------GSHIRKVSARSLWIRILTARMEQGEPYIIYSDHVNNARPQHHKLAGLEVK 281

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC EITL +  +           L +       ++      I   +  LD V    I
Sbjct: 282 TSNLCAEITLPTGMDHHGKERTAVCCLSSLNLETWDEWKDDPQFIEDVMLFLDRVLQDFI 341

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +E+AK +    R++GLG+MGF S L   +IP+ S  A        E I   A +
Sbjct: 342 DRAPDDMERAKYAAARERSVGLGVMGFHSFLQAKNIPFESVIAKVWNKRIFEHIRKQADA 401

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LAQ  GA                                                 
Sbjct: 402 ASHKLAQSLGACP------------------------------------------DAAEY 419

Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G+    SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L Q+
Sbjct: 420 GVMERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLLTQK 479

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               + + S +  + GS+ +++ +    K +  TAFE+D  W+IE A+ R  +I QAQS+
Sbjct: 480 GRNTDDVWSSITLNKGSVQHLDFLDQQEKDVFKTAFELDQRWVIEHAADRAPFICQAQSI 539

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L      + L  I+  AW  G+K+ YY RS S    + +   G          TD  
Sbjct: 540 NLFLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSVQRAD-AVSDGKVKNDIMQKETDEA 598

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
                   P+S T   EC  CQ
Sbjct: 599 LPPIPPAAPASSTDYEECLACQ 620


>gi|323474617|gb|ADX85223.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus REY15A]
 gi|323477349|gb|ADX82587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus HVE10/4]
          Length = 838

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/828 (24%), Positives = 356/828 (42%), Gaps = 116/828 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+K++  DG +  F  +++   +        D  +  ++++   N+ D  +    +   +
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      K P   ++  R++L ++   V                              
Sbjct: 68  ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320
                       DF+          E+D    Y  L++L  RY L        IE PQ  
Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142

Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA  LA  E +        ++   +FY ++SS  F+ ++PTL NS TR   LS+CF+
Sbjct: 143 FRRVARFLASVERKYDKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202

Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+
Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + +   + QGGKR+GA    +  WH D+E+F+  +     D  +  + N +    D 
Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531
           FM+ V +     L +P +       +      A      +  +                 
Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381

Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                           E  V R ++A +L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSINL             D+D LA  I   VR L
Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFP-------IDSIGLLAEVRDELAMNRT--SR 743
           HA  AS+E+A+E+G + ++   L+             +    +  +  D +    +   +
Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVTDKPSDYVKKLTSVVDK 617

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +  
Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S   
Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
              ++ ++VIKR+G V  F   KI   + K            S    ++   +       
Sbjct: 7   STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122
           +  +           I D VE +L+++        ++ + YVL R
Sbjct: 53  VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92


>gi|189425377|ref|YP_001952554.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           lovleyi SZ]
 gi|189421636|gb|ACD96034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter lovleyi SZ]
          Length = 745

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 179/661 (27%), Positives = 295/661 (44%), Gaps = 79/661 (11%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345
                L +L  RY      G  +E P   F RVA  +A  + + +K+A        FY +
Sbjct: 13  LTPNALTVLEKRYLKRDTSGKPLETPADMFRRVAETIAEPDKKFDKKADVKKLADRFYEM 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           + SF F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  ++
Sbjct: 73  IVSFDFLPNSPTLMNAGRELGQLSACFVLPVGDSIEEIFDAVKFTAMIHKSGGGTGFSFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G I F++V +     + QGG R+GA    L   H ++ +F+  
Sbjct: 133 RLRPANDLVKTTTGVSSGPISFMRVFDTATETIKQGGTRRGANMGILRVDHPNIMDFIMC 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D++  ++ N +  + + FM+ V ++  + L +P +                   
Sbjct: 193 KA----DQKLFNNFNISVGLTEKFMEAVERDEEYDLLNPRD------------------- 229

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                         ++A  ++++++   +E G P I F D  N  +P  HVG + S+N C
Sbjct: 230 --------KSKMGTLNARKVFQRIVNQAWENGEPGIIFLDRLNRDNPTPHVGEIESTNPC 281

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL    +    D+ +L   I  AV  LDNVI+ N + +++
Sbjct: 282 GEQPLLPY----ESCNLGSINLGRFVSEGAIDWSRLKGVIHDAVHFLDNVIEANKYPLQQ 337

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                H++R IGLG+MG+   L LL IPY S EAV++  + M+FI+    +AS EL Q+R
Sbjct: 338 IHDMTHSNRKIGLGVMGWADMLILLGIPYNSDEAVKLGKKVMQFINDEGHAASRELGQKR 397

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++ +F GS         D  G L +                           RN+    
Sbjct: 398 GSFPNFTGS-------TFDKKGALPQ---------------------------RNATVTT 423

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I   S  ++P +   YVK+ M G     VN       K+R  +   ++  +
Sbjct: 424 IAPTGTISMIANASSGVEPLFAISYVKNVMDGTKLVEVNPTFEQLAKERGFYSAELMEKI 483

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
             H GS+ +++ +P D++++  TA +I P   I+  +  Q   D A S  +      + +
Sbjct: 484 AEH-GSVHDLDEVPADVRRVFVTAHDITPEDHIQMQAAFQYHTDNAVSKTVNFPNTATIE 542

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            ++ +Y  A+  G K     R  S      ST +  +    A   T+ +        P +
Sbjct: 543 DVENVYMLAYKTGCKGVTIYRDGSRDEQVLSTTRKEEKAAVAAIGTEDDKHAIKRERPKA 602

Query: 944 C 944
            
Sbjct: 603 L 603


>gi|227830253|ref|YP_002832033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.S.2.15]
 gi|229579068|ref|YP_002837466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.G.57.14]
 gi|284997676|ref|YP_003419443.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.D.8.5]
 gi|227456701|gb|ACP35388.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.S.2.15]
 gi|228009782|gb|ACP45544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.G.57.14]
 gi|284445571|gb|ADB87073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus L.D.8.5]
          Length = 838

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/828 (24%), Positives = 355/828 (42%), Gaps = 116/828 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+K++  DG +  F  +++   +        D  +  ++++   N+ D  +    +   +
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      K P   ++  R++L ++   V                              
Sbjct: 68  ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320
                       DF+          E+D    Y  L++L  RY L        IE PQ  
Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142

Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA  LA  E +        ++   +FY ++SS  F+ ++PTL NS TR   LS+CF+
Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202

Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+
Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + +   + QGGKR+GA    +  WH D+E+F+  +     D  +  + N +    D 
Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531
           FM+ V +     L +P +       +      A      +  +                 
Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381

Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                           E  V R ++A +L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSINL             D+D LA  I   VR L
Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557

Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743
           HA  AS+E+A+E+G + ++   L+            +  I  +        +   +   +
Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTSVVDK 617

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +  
Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S   
Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
              ++ ++VIKR+G V  F   KI   + K            S    ++   +       
Sbjct: 7   STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122
           +  +           I D VE +L+++        ++ + YVL R
Sbjct: 53  VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92


>gi|94495784|ref|ZP_01302363.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58]
 gi|94424476|gb|EAT09498.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58]
          Length = 626

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/678 (29%), Positives = 300/678 (44%), Gaps = 97/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   +    +    A   Y+ 
Sbjct: 37  DASRDALLTEFGKETLNDRYLL-----PGESYQDLFARVAAAYS----DDADHAQRVYDY 87

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 88  ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 147

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 148 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 206

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V   A + L SP +                   
Sbjct: 207 RKTSGDFNRKALNLHHGVLLTDEFMEAVRDGADFNLRSPKDQ------------------ 248

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   ++A AL++K++ +   TG P+I F D  N   P+ H      V +S
Sbjct: 249 ---------SVRGTVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRELGLKVSTS 299

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +       ++    +     +R LDNV    ID 
Sbjct: 300 NLCSEITLPTGRDHLGNDRTAVCCLSSMNLETWDEWKDHPTFAEDIMRFLDNVLQDYIDR 359

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++GLG+MGF S L   +IP+    A        + I+     AS
Sbjct: 360 APPEMARAKYSAMRERSVGLGVMGFHSFLQARNIPFEGAMAKSWNLRIFKQINAKVNEAS 419

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LAQERG                                        D   + V     
Sbjct: 420 MLLAQERGPCP-------------------------------------DAADQGVME--- 439

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L  +    
Sbjct: 440 RFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKAKDS 499

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            A+ + +    GS+ +++ +  + K +  T+FEID  WL+E A+ R  +IDQAQSLNL++
Sbjct: 500 TAVWNSILERGGSVQHLDFLTQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLNLFI 559

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ +AW +G+K+ YYLRS+S                 A  V   N+   
Sbjct: 560 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA-----------GFAGGVEADNTIDA 608

Query: 937 SLGIPSSCTSDTECEVCQ 954
                +  T+  EC  CQ
Sbjct: 609 PRFEIAETTNYDECLACQ 626


>gi|327401108|ref|YP_004341947.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Archaeoglobus veneficus SNP6]
 gi|327316616|gb|AEA47232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Archaeoglobus veneficus SNP6]
          Length = 749

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 177/665 (26%), Positives = 290/665 (43%), Gaps = 79/665 (11%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNL 345
                    +L  RY L    G+ IE P+    RVA  +A  E +     EK A +F+ +
Sbjct: 1   MELTKTAEVVLKKRYLLKDEEGNVIETPEQMLWRVANAIAQPEEKYGGDVEKTAKQFFEM 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           + +  FM ++PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++
Sbjct: 61  MDNQLFMPNSPTLMNAGTELNQLSACFVIPVDDSIDGIFKALWDMAKVQKSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  T G + G + F+K+ +     + QGGKR+GA    L   H D+E+F+  
Sbjct: 121 RLRPKGDIVKSTMGVASGPVSFMKIFDAATEQIKQGGKRRGANMGVLNVHHPDIEDFITA 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     +     + N +  + D FM+ +  +A +   +P                     
Sbjct: 181 KW----EEGVLRNFNISVAVTDAFMEALKNDAEYEQINPRT------------------- 217

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V RK+ A  ++  ++   +  G P + F D  N  +P  H+G++ ++N C
Sbjct: 218 --------GEVVRKVPARKIFNLIVEGAWRNGEPGVVFIDTINRHNPTPHIGMIEATNPC 269

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSIN+     N   D+D L   +  AVR LDNVID+N + + +
Sbjct: 270 GEQPLLPY----ESCNLGSINVSKFVKNGDIDWDWLREIVWLAVRFLDNVIDVNNYPLPE 325

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K    +R IGLG+MGF   L  L IPY S E + +A++ M FI   +  AS  LA+ER
Sbjct: 326 IEKMTLANRKIGLGVMGFADLLFKLKIPYDSEEGIALAEKLMSFIQEESHKASQALAEER 385

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + ++KGS W                +  + M   +                       
Sbjct: 386 GVFPNWKGSTW---------------EKKGIKMRNATTTTIAPTGTI------------- 417

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKS-NMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
                  + I G S  I+P Y   + +   + G+ F  +N    + L+Q  L+ + +I+ 
Sbjct: 418 -------SIIAGCSSGIEPVYALAFKRMHILDGEEFFEINPIFEDTLRQLGLYSDELIAK 470

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
           +   +GSI +I  IP ++K+I   A +I P W +   +  QK+ D A S  + +    + 
Sbjct: 471 VAE-EGSIQDIPEIPKEIKRIFKCALDIAPEWHVRMQAAFQKYTDNAVSKTINMPNHATR 529

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K ++  +  A+ +G K     R  S       T K    +   +  T          I +
Sbjct: 530 KDVEKAFLLAYELGCKGITVYRDGSREEQVLKTKKAEKKEFRPIKPTGYVEPRPRPKITT 589

Query: 943 SCTSD 947
             T +
Sbjct: 590 GRTIE 594


>gi|229582181|ref|YP_002840580.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.N.15.51]
 gi|228012897|gb|ACP48658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus Y.N.15.51]
          Length = 838

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 201/828 (24%), Positives = 354/828 (42%), Gaps = 116/828 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+K++  DG +  F  +++   +        D  +  ++++   N+ D  +    +   +
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      K P   ++  R++L ++   V                              
Sbjct: 68  ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320
                       DF+          E+D    Y  L++L  RY L        IE PQ  
Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142

Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA  LA  E +        ++   +FY ++SS  F+ ++PTL NS TR   LS+CF+
Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202

Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+
Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + +   + QGGKR+GA    +  WH D+E+F+  +     D  +  + N +    D 
Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531
           FM+ V +     L +P +       +      A      +  +                 
Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381

Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                           E  V R ++A +L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSINL             D+D LA  I   VR L
Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557

Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743
           HA  AS+E+A+E+G + ++   L+            +  I  +        +   +   +
Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTSVVDK 617

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  +I  +    G I +   +P  L+K+  TA E+ P++ +   +  
Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIDDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S   
Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
              ++ ++VIKR+G V  F   KI   + K            S    ++   +       
Sbjct: 7   STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122
           +  +           I D VE +L+++        ++ + YVL R
Sbjct: 53  VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92


>gi|229584769|ref|YP_002843271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus M.16.27]
 gi|228019819|gb|ACP55226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus islandicus M.16.27]
          Length = 838

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/828 (24%), Positives = 354/828 (42%), Gaps = 116/828 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+K++  DG +  F  +++   +        D  +  ++++   N+ D  +    +   +
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      K P   ++  R++L ++   V                              
Sbjct: 68  ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320
                       DF+          E+D    Y  L++L  RY L        IE PQ  
Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142

Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA  LA  E +        ++   +FY ++SS  F+ ++PTL NS TR   LS+CF+
Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202

Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+
Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + +   + QGGKR+GA    +  WH D+E+F+  +     D  +  + N +    D 
Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531
           FM+ V +     L +P +       +      A      +  +                 
Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381

Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                           E  V R ++A +L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSINL             D+D LA  I   VR L
Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557

Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743
           HA  AS+E+A+E+G + ++   L+            +  I  +        +       +
Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTGVVDK 617

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 618 LDFDLLKDERLKYGLRNSTIVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +  
Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S   
Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
              ++ ++VIKR+G V  F   KI   + K            S    ++   +       
Sbjct: 7   STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122
           +  +           I D VE +L+++        ++ + YVL R
Sbjct: 53  VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92


>gi|188578921|ref|YP_001915850.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523373|gb|ACD61318.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 832

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 236/829 (28%), Positives = 368/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RLE  +++  +    +         +
Sbjct: 45  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 104

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+  +  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 397 QRLRAHDVFISVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFR 456

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 636

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  D    +   A+++D    + 
Sbjct: 743 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 771

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820


>gi|108805660|ref|YP_645597.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766903|gb|ABG05785.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrobacter xylanophilus DSM 9941]
          Length = 747

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 177/647 (27%), Positives = 286/647 (44%), Gaps = 86/647 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE----------KEKR 338
           D       L +L  RY    + G  +E P   F RVA  +A  E +           E+ 
Sbjct: 12  DIELTENALAVLRKRYLKKNDRGEPVERPVDMFRRVAGNIAEAELKFRDGEEGRALYEEY 71

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
              F  ++ S  FM ++PTL N+G    QLS+CF+  V D + GI+  L+  A++ K  G
Sbjct: 72  YGRFLQMMLSRRFMPNSPTLMNAGRELQQLSACFVLPVEDSIDGIYDTLKHQAIIHKSGG 131

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G G  ++ +R     +  T G S G + F+ + + +   + QGG R+GA    L   H D
Sbjct: 132 GTGFAFSRLRPKNDIVQSTMGVSSGPVSFMAIYDASTDKIKQGGTRRGANMGILRVDHPD 191

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +EEF+  +    +D  +  + N +  I D FM+ V ++  + L +P              
Sbjct: 192 IEEFVTCK----NDNDQITNFNISVAITDAFMEAVEKDGEFELVNPR------------- 234

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                            V R++ A  L++K+    +  G P + F D  N  +P      
Sbjct: 235 --------------NGAVTRRVRARELFKKIAYGAWLNGEPGVVFIDRINADNPT-PQFP 279

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVI 636
           + S+N C+E  L         CNLGSINL   ++      D+++L  T+RTAVR LDNVI
Sbjct: 280 IESTNPCSEAHLPPY----DSCNLGSINLSLFYSEEAGDVDWEELRETVRTAVRFLDNVI 335

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           + N + + + ++ +  +R IGLG+MGF   L  + IPY S E +  A+  M FI   A  
Sbjct: 336 EQNNYPLPQIEEMSKGNRRIGLGVMGFADLLIKMGIPYDSEEGLAFAERVMRFIDEEAWE 395

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA ERG ++ ++GS                E R +                     
Sbjct: 396 ASRALAAERGVFAHYEGSRH--------------EARGDR-------------------- 421

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            +RN+    IAPT TI+ I G S  I+P Y   +++     +   VN   V   ++R  +
Sbjct: 422 -VRNATVTTIAPTGTISLIAGCSGGIEPLYAVAFMRRQADMEMPDVNPEFVRVARERGFY 480

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E ++  +    GS+  +E +P+D++++  T+ +I P W +   +  QK      S  + 
Sbjct: 481 SEELMKKVAE-QGSVRGLEEVPEDVRRVWVTSHDISPEWHVRMQAAFQKHTSMGISKTIN 539

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           L +E + + ++  YR A+ +G K     R  S      ST K     
Sbjct: 540 LPNEATVEDVERAYRLAYSLGCKGIAVYRDGSREEQVLSTGKTAKQP 586


>gi|289664734|ref|ZP_06486315.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670857|ref|ZP_06491932.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 827

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 235/829 (28%), Positives = 368/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A +              I  + G   I F  +RL   +++  +    +         +
Sbjct: 40  RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSVF 99

Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
                 D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 100 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 151

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     ++ ERD  F Y GL +
Sbjct: 152 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 211

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    +     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 212 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 271

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 272 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 331

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 332 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 391

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 392 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 451

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 452 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 511

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 512 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 571

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 572 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 631

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  I AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 632 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 677

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 678 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 737

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  +    +   A+++D    + 
Sbjct: 738 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 766

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ +DQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 767 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 815


>gi|172036269|ref|YP_001802770.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp.
           ATCC 51142]
 gi|171697723|gb|ACB50704.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp.
           ATCC 51142]
          Length = 769

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 218/786 (27%), Positives = 363/786 (46%), Gaps = 86/786 (10%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             K+++   DG+  + N  ++  +V  AC+  +DV+S  + +     + DG++  +++  
Sbjct: 30  ESKIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNSIALEAGLTTRLRDGITTREIQDN 88

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +  +    EP++  V  R  +  L ++ L                  Y       +
Sbjct: 89  LINCALEMCSPTEPDWRYVAGRLHIWSLWKDTL---------VNRGYQYGNYETTVETKV 139

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E G     L       +L    + +  + D  ++Y G  +L  RY L       E+PQ  
Sbjct: 140 EAGQYDNRLLT-YSTTELREAGSWINPDWDTDYDYAGAVLLTSRYLL-----PQELPQEA 193

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            +  A+ LA  E    +   A +FY  ++S     +TP L N       L+SCF+ ++ D
Sbjct: 194 LLSCALLLATVESPENRLPWARQFYEAIASRKVSLATPILANLRVPGGSLTSCFILSIDD 253

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  IF  +   A ++K  GG+G + + +R  G+ + G N  S G+IP++K+ NDTA+AV
Sbjct: 254 NLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGIIPWIKLLNDTAIAV 313

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GAV   ++ WH+DV EFL+++   GD RR+ +D+     + D FM+RV     
Sbjct: 314 NQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKEQ 373

Query: 499 WTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+ +       +L+G++FE AY   E + DR EI ++++++A  L++ ++   
Sbjct: 374 WTLVDPYEIREKLGIELAELWGEKFEAAYRLIEAELDR-EITLYKRVNARELFKTIMRSQ 432

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFA 612
            ETG P++ FKD  N  +P +HVG +   NLCTE   N +  +E   CNL S+NL     
Sbjct: 433 VETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESFSNVTPGKEAHCCNLVSLNLANIEE 492

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
                  +L    + AVR+LDN IDI     E AK  N  +R IG+G MG    L    +
Sbjct: 493 Y------ELNYLCKIAVRILDNTIDITNPPFEDAKAHNDRYRTIGVGCMGLADWLAKKEL 546

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y   E +       E + +     S+ELA+ER  Y +F+GS W++G+       + ++ 
Sbjct: 547 TY---ENLTEISNLFEEVGYWCTHTSMELAKERSPYDAFEGSDWNKGLL------IGSKP 597

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            +    N   +  W +L + +KT G+RNS+  AIAP  + + + G + SI P Y   +  
Sbjct: 598 VNWFVENAHKKERWIQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYD 657

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G    +    + +      W                            +     +D
Sbjct: 658 KWAKGTVP-IAPPFIKD----SFW---------------------------FYHENKTLD 685

Query: 853 PMWLIESASRRQKWIDQAQSL----NLYL-----DEP----SGKKLDFIYRQAWLMGLKT 899
              ++++ S  Q+WID   S+    NL       +EP    + K +      AW  G K 
Sbjct: 686 QQKVVKAVSTIQQWIDTGISMELLFNLNQGIYFPNEPERCLTAKDIFETLLLAWKEGCKA 745

Query: 900 TYYLRS 905
            YY+R+
Sbjct: 746 IYYVRT 751


>gi|325919222|ref|ZP_08181269.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325923020|ref|ZP_08184720.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325546490|gb|EGD17644.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325550296|gb|EGD21103.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 833

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 238/829 (28%), Positives = 373/829 (44%), Gaps = 104/829 (12%)

Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
           R A + H+++         I  + G   I F  +RLE  +++  +    +         +
Sbjct: 46  RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 105

Query: 187 KNM--YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
             +   D ++  DL   LI  +   ++   P +    AR  L +L +           + 
Sbjct: 106 GFVDRKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 157

Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             ++    Y  +        +  V +  +       +L+     +  ERD  F Y GL +
Sbjct: 158 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIAPERDTLFAYNGLYL 217

Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351
           L  RY    N     E+PQ  ++ +A+ L   E          + +   E Y  LS+ + 
Sbjct: 218 LATRYLATDNSRGVFELPQERWLTIALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYM 277

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
             +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ GG+G     VR  G
Sbjct: 278 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 337

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           + I G +  S GV+P++K  N+TAV+V+Q G+RKGA+  YL+ +H D+E FLDLR N GD
Sbjct: 338 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGD 397

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523
            R R HD+ T+  IPDLFM+ V +   W LF P EV  +   Y ++F  E        + 
Sbjct: 398 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 457

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
               +    E    + + A+ ++++++    ETG+P++ ++D  N ++P +H G+V+SSN
Sbjct: 458 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 517

Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620
           LCTEI  N S                     +  VCNL SINL           D     
Sbjct: 518 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGAD 577

Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            L   I   VR+LDNVID+N   + +A  +N  +RAIGLG  G+   L    I + + EA
Sbjct: 578 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 637

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            + +DE  E I++  + AS+ELA+E+G YS F+GS W  G              +     
Sbjct: 638 EDYSDELYERINYLTVQASMELAKEKGTYSVFRGSDWHTG--------------EYFRAR 683

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W EL  +V   G+RN+  +A+AP  + A I G + SIDP Y   Y +       
Sbjct: 684 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 743

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858
            V                                   +  +    +   A+++D    + 
Sbjct: 744 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 772

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +RRQ+ IDQ+ S N Y+        L  ++  AW  GLKTTYY+RS 
Sbjct: 773 QNARRQRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 821


>gi|284175618|ref|ZP_06389587.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus 98/2]
 gi|261602517|gb|ACX92120.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfolobus solfataricus 98/2]
          Length = 838

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 209/830 (25%), Positives = 361/830 (43%), Gaps = 120/830 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +        D  +  ++++   N+ D   ++ +   ++
Sbjct: 12  KIKVIKRDGKVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRVIADIV 67

Query: 204 FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
              R LIE    Y  +     R++L ++   V                            
Sbjct: 68  E--RNLIENSLKYPFLMELAKRYVLARIYNHVFGK------------------------- 100

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQ 318
                         DFD          E+D    Y  L++L  RY L        IE PQ
Sbjct: 101 ----------GKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQ 140

Query: 319 AFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             F RVA  LA  E +        ++   +FY ++S   F+ ++PTL NS TR   LS+C
Sbjct: 141 MLFRRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSAC 200

Query: 372 FLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           F+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + 
Sbjct: 201 FVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVS 260

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D  +  + N +    
Sbjct: 261 FMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAY 319

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR--------------- 531
           D FM  V +     L +P +       +      A      +  +               
Sbjct: 320 DYFMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVS 379

Query: 532 -----------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                             E  V + ++A +L+ +++   +++G P + F D  N R P  
Sbjct: 380 LDESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVW 439

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVR 630
           ++G ++++N C E  L         CNLGSINL             D+D LA  IR  VR
Sbjct: 440 YLGKINATNPCGEEPLLP----WESCNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVR 495

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI
Sbjct: 496 FLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFI 555

Query: 691 SFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLL------AEVRDELAMNRT-- 741
            +HA  AS+E+A+E+G + ++   L+ D     +D   LL       +  D +    +  
Sbjct: 556 FYHAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVV 615

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  
Sbjct: 616 DKLDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIE 675

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +
Sbjct: 676 IDPLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQA 734

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S   
Sbjct: 735 AWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 24/105 (22%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
              ++ ++VIKR+G V  F   KI   + K            S    ++   +       
Sbjct: 7   STSLRKIKVIKRDGKVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122
           +  +     +     I D VE +L+++        ++ + YVL R
Sbjct: 53  VKDNAIDTRV-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92


>gi|227827566|ref|YP_002829346.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent
           [Sulfolobus islandicus M.14.25]
 gi|238619723|ref|YP_002914549.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent
           [Sulfolobus islandicus M.16.4]
 gi|227459362|gb|ACP38048.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent
           [Sulfolobus islandicus M.14.25]
 gi|238380793|gb|ACR41881.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent
           [Sulfolobus islandicus M.16.4]
          Length = 838

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 202/828 (24%), Positives = 355/828 (42%), Gaps = 116/828 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+K++  DG +  F  +++   +        D  +  ++++   N+ D  +    +   +
Sbjct: 12  KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      K P   ++  R++L ++   V                              
Sbjct: 68  ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320
                       DF+          E+D    Y  L++L  RY L        IE PQ  
Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142

Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA  LA  E +        ++   +FY ++SS  F+ ++PTL NS TR   LS+CF+
Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202

Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+
Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           KV + +   + QGGKR+GA    +  WH D+E+F+  +     D  +  + N +    D 
Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531
           FM+ V +     L +P +       +      A      +  +                 
Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381

Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                           E  V R ++A +L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSINL             D+D LA  I   VR L
Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557

Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743
           HA  AS+E+A+E+G + ++   L+            +  I  +        +   +   +
Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTSVVDK 617

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +  
Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S   
Sbjct: 737 QQWNDSGTSKTINLRFEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
              ++ ++VIKR+G V  F   KI   + K            S    ++   +       
Sbjct: 7   STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122
           +  +           I D VE +L+++        ++ + YVL R
Sbjct: 53  VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92


>gi|71276517|ref|ZP_00652792.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71900742|ref|ZP_00682864.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|170729740|ref|YP_001775173.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella
           fastidiosa M12]
 gi|71162694|gb|EAO12421.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71729512|gb|EAO31621.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|167964533|gb|ACA11543.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12]
          Length = 830

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 235/807 (29%), Positives = 361/807 (44%), Gaps = 100/807 (12%)

Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203
           I  + G   + F+  RLE  ++        +         +      D ++  DL   LI
Sbjct: 65  ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259
             +   ++   P +    AR  L +L +           +   ++    Y  +       
Sbjct: 125 REAEARVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318
            +  + +  +  S    +L+     +  ERD  F Y GL +L  RY          E+PQ
Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASRGVFELPQ 236

Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             ++ +A+ L   E          + +   E Y  LS+ +   +TPTL N+G  + QLSS
Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF+ TV D L GI+ +  + A ++K+ GG+G     VR  G+ I G    S GV+P++K 
Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N+TAV+V+Q G+RKGA+  YL+ WH D+E FLDLR N GD R R HD+ T+  IPDLFM
Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542
           + V +   W LF P EV  +   Y ++F  E        +          E    + + A
Sbjct: 417 EAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------- 592
           + ++++++    ETG+P++ ++D  N ++P +HVG+V+SSNLCTEI  N           
Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536

Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641
                     + +  VCNL SINL             D L   I   VR+LDNVID+N  
Sbjct: 537 SGNQIVTTKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +A  +N  +RAIGLG  G+   L    I + S EA + +D   E I++  I AS+EL
Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDVLYERINYLTIRASMEL 656

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G Y+ F GS W  G              +       +   W EL  +V   G+RN+
Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +A+AP  + A I G + SIDP Y   Y +        V                    
Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPVYSAFYYEEKKDYRRPVAAP----------------- 745

Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                          +  D    +   A+++D    I   +RRQ+ +DQ+ S N Y+   
Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                L  ++  AW  GLKTTYY+RS 
Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818


>gi|103487258|ref|YP_616819.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingopyxis
           alaskensis RB2256]
 gi|98977335|gb|ABF53486.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
           RB2256]
          Length = 676

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 198/678 (29%), Positives = 299/678 (44%), Gaps = 98/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ 
Sbjct: 88  DASRDALLTDFGKETLQDRYLL-----PGESYQDLFARVADAYA----DDQDHAQRLYDY 138

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  W 
Sbjct: 139 ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVGTWNENVWLASRGGGIGTYWG 198

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 199 AVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 257

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    I D FM+ V     + L SP +                   
Sbjct: 258 RKPSGDFNRKALNLHHGVLITDEFMEAVRDGTEFNLRSPKDN------------------ 299

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 300 ---------SVRGTVDARSLFQKLVETRLATGEPYIIFIDQVNRMMPKHHRDLGLKVTTS 350

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +       +++     I   +R+LDNV    ID 
Sbjct: 351 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLETWDEWNGDKRFIEDVMRMLDNVLQDYIDR 410

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++GLG+MGF S L    +P+    A        + I      AS
Sbjct: 411 APPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSSNLRIFKHIRAQVDQAS 470

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LA+ERG                                        D   + V     
Sbjct: 471 MLLAKERGPCP-------------------------------------DAADQGVME--- 490

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F++ N  L   L  +    
Sbjct: 491 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIRNPHLEALLVDKAKNS 550

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +A+ + +    GS+ +++ +  D K +  T+FEID  WL+E A+ R  +IDQA SLNL++
Sbjct: 551 DAVWNSILERGGSVQHLDFLTQDEKDVFKTSFEIDQRWLLELAADRTPYIDQAASLNLFI 610

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ +AW +G+K+ YYLRS+S                      + +++  
Sbjct: 611 PADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRA------------GFAGGVEADNTPE 658

Query: 937 SLGIPSSCTSDTECEVCQ 954
           +     + T   EC  CQ
Sbjct: 659 AAKFELATTDYDECLACQ 676


>gi|332797062|ref|YP_004458562.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidianus hospitalis W1]
 gi|332694797|gb|AEE94264.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidianus hospitalis W1]
          Length = 841

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 205/831 (24%), Positives = 368/831 (44%), Gaps = 120/831 (14%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            K+K++  DG    F  +++ + +    S + D  +  ++  +  N  D  + +D+    
Sbjct: 15  NKIKVIKRDGRKEEFKLEKILVKIGFVPSEVIDGIANDIIQNSKDNTIDTRTIADIVE-- 72

Query: 203 IFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
               R LIE   + P    +  +++L ++   V                           
Sbjct: 73  ----RNLIENSLEHPELMDLAKKYVLARIYNHVYGK------------------------ 104

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMP 317
                          DFD           +D    Y  L++L  RY L        IE P
Sbjct: 105 -----------GKWKDFD----------PKDLLLTYNALKVLEARYLLKDPNTLRYIETP 143

Query: 318 QAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
           Q  F RVA  LA  E +        +    +FY+++S+  F+ +TPTL NSGTR   LS+
Sbjct: 144 QMMFRRVAKYLASVELKYGKSESEVKALEEKFYDIMSNLRFLPNTPTLMNSGTRLGILSA 203

Query: 371 CFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           CF+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G +
Sbjct: 204 CFVIPVRDSMTTPEGDGIYDALRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPV 263

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F+K+ + +   V QGGKR+GA    +  WH ++E+F++ +     D  +  + N +  +
Sbjct: 264 SFMKIFDVSTDVVKQGGKRRGANMGVMHVWHAEIEDFINSKSGKLKDV-QLQNFNISVGV 322

Query: 486 PDLFMKRVTQNAGWTLFSPD--EVSDLHDLYGKEFEIAYENYERQ--------------- 528
            D FM++V +     L +P    +      Y       Y + E                 
Sbjct: 323 YDYFMEKVERGEEVPLITPRKTRIPGTDHDYYINKARNYMSEEWVQEEILNELEEKGGAV 382

Query: 529 ---------------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                              E  + R I+A +L+ +++   +++G P + F D  N R P 
Sbjct: 383 WLDESKIITVDEALVIAEKEGAIIRWINARSLFNEIVRSAWDSGDPGLLFIDEINRRHPV 442

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAV 629
            ++G ++++N C E  L         CNLGSINL             D+D LA TI+ AV
Sbjct: 443 WYLGKINATNPCGEEPLLP----WESCNLGSINLEKFVKETENGKYIDWDGLAETIKYAV 498

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNVID N + +++ +++  + R +GLG+MG    L  L IPY S +A+ ++ +  +F
Sbjct: 499 RLLDNVIDANKYPLKQIEQATKSTRKVGLGVMGLARMLIKLGIPYDSVDAIYLSYQVAKF 558

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-----AEVRDELAMNR---- 740
           I +HA   S+ELA+E+G++  +    +            L      E +    + +    
Sbjct: 559 IYYHAFKTSIELAKEKGSFPVYDPLRYHDIWESARPFEYLLEVTKVEGKPSEYVRKLTAI 618

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
             ++ + ELK      G+RN+  +++APT TI+ I G S SI+P +   ++++   G F 
Sbjct: 619 VDKIDFSELKAERIKHGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGKFM 678

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            ++S  +  L++ +L +  ++  +    G++G    +P  ++K+  TA E+ P + +   
Sbjct: 679 EIDSLFLEYLRKYELDNPEVVKKVAET-GTVGENMFMPATIRKLFRTAHEVPPEYHLLHQ 737

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +  Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S + 
Sbjct: 738 AAWQQWNDSGTSKTINLRSEEPPETVERVYLMAWKLGVKGITVYRDKSKSQ 788



 Score = 51.0 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            +  ++VIKR+G    F   KI   I                   ++I  +    +    
Sbjct: 13  SLNKIKVIKRDGRKEEFKLEKILVKI--------------GFVPSEVIDGIANDIIQNSK 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQS-----GHHKITREYVLYR 122
            +           I D VE +L+++         + ++YVL R
Sbjct: 59  DNTIDTRT-----IADIVERNLIENSLEHPELMDLAKKYVLAR 96


>gi|15897814|ref|NP_342419.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2]
 gi|13814111|gb|AAK41209.1| Ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2]
          Length = 841

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 209/830 (25%), Positives = 361/830 (43%), Gaps = 120/830 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+K++  DG +  F  +++   +        D  +  ++++   N+ D   ++ +   ++
Sbjct: 15  KIKVIKRDGKVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRVIADIV 70

Query: 204 FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
              R LIE    Y  +     R++L ++   V                            
Sbjct: 71  E--RNLIENSLKYPFLMELAKRYVLARIYNHVFGK------------------------- 103

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQ 318
                         DFD          E+D    Y  L++L  RY L        IE PQ
Sbjct: 104 ----------GKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQ 143

Query: 319 AFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
             F RVA  LA  E +        ++   +FY ++S   F+ ++PTL NS TR   LS+C
Sbjct: 144 MLFRRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSAC 203

Query: 372 FLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           F+  V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + 
Sbjct: 204 FVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVS 263

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+KV + +   + QGGKR+GA    +  WH D+E+F+  +     D  +  + N +    
Sbjct: 264 FMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAY 322

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR--------------- 531
           D FM  V +     L +P +       +      A      +  +               
Sbjct: 323 DYFMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVS 382

Query: 532 -----------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                             E  V + ++A +L+ +++   +++G P + F D  N R P  
Sbjct: 383 LDESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVW 442

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVR 630
           ++G ++++N C E  L         CNLGSINL             D+D LA  IR  VR
Sbjct: 443 YLGKINATNPCGEEPLLP----WESCNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVR 498

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + +++ + +    R +GLG+MG       L I Y S +A+ ++ +  +FI
Sbjct: 499 FLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFI 558

Query: 691 SFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLL------AEVRDELAMNRT-- 741
            +HA  AS+E+A+E+G + ++   L+ D     +D   LL       +  D +    +  
Sbjct: 559 FYHAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVV 618

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            +L +D LK      G+RNS  ++IAPT TI+ I G S SI+P +   +V++   G F  
Sbjct: 619 DKLDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIE 678

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           ++   +  L++ +L D  +I  +    G IG+   +P  L+K+  TA E+ P++ +   +
Sbjct: 679 IDPLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQA 737

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             Q+W D   S  + L  E   + ++ +Y  AW +G+K     R +S   
Sbjct: 738 AWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 787



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 24/105 (22%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
              ++ ++VIKR+G V  F   KI   + K            S    ++   +       
Sbjct: 10  STSLRKIKVIKRDGKVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 55

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122
           +  +     +     I D VE +L+++        ++ + YVL R
Sbjct: 56  VKDNAIDTRV-----IADIVERNLIENSLKYPFLMELAKRYVLAR 95


>gi|114327551|ref|YP_744708.1| ribonucleotide-diphosphate reductase subunit alpha [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315725|gb|ABI61785.1| ribonucleoside-diphosphate reductase alpha chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 650

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 205/681 (30%), Positives = 298/681 (43%), Gaps = 100/681 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY +       E  Q  F RV+             A   Y+ 
Sbjct: 58  DDSRDALLTDFGKATLNDRYLM-----PGESYQDLFARVSSYYGDNAE----HAQRIYDY 108

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SCFL    D L GI G   EN  LA   GG+G+ W 
Sbjct: 109 MSRLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVGLWNENVWLASKGGGIGSYWG 168

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R +G  +   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++L
Sbjct: 169 NLRSIGEKVGQ-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFVEL 227

Query: 466 RKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R+ TG D  R+  +++    + D FM+ V  +  W L SP +                  
Sbjct: 228 RRPTGGDPNRKALNLHHGVLLSDAFMRAVDHDEEWALLSPKD------------------ 269

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V RKISA ALW ++LT   E G P+I F D  N   P+        V +
Sbjct: 270 ---------KSVIRKISARALWIRILTARMEQGEPYIVFSDHVNRALPEHQKLAGLEVKT 320

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EITL +  ++          L +        +    + I   +  LDNV    ID
Sbjct: 321 SNLCSEITLPTGIDQHGKQRTAVCCLSSLNLETWHAWKDHPTFIEDVMLFLDNVLQDFID 380

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
               T+E+A+ S    R++GLG+MGF S L    +P+ S  A        + I   A  A
Sbjct: 381 RAPDTMERARYSAMRERSVGLGVMGFHSFLQAERVPFESVVAKVWNLRMFKHIRAQADKA 440

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA ERGA                                                 G
Sbjct: 441 SRMLAAERGACP------------------------------------------DAADYG 458

Query: 758 MR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
           +    SN MAIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L   L +R 
Sbjct: 459 LNERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQQLLAERG 518

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             +E + S +  + GS+ +++ + +  K +  TAFE+D  W+IE A+ R  +I Q+QS+N
Sbjct: 519 QDNEDVWSSITLNKGSVQHLDFLTEAEKAVFKTAFELDQRWIIEHAADRTPYICQSQSVN 578

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L+L      + L  ++  AW  GLK+ YY RS S               ++   V   + 
Sbjct: 579 LFLPANVHKRDLHQVHMLAWKRGLKSLYYCRSLSIQRA---------DAVSEKAVNLDHQ 629

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
           +  +     S T+  EC  CQ
Sbjct: 630 AKAAPAAAVSTTNYEECLSCQ 650


>gi|241761976|ref|ZP_04760061.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373656|gb|EER63228.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 613

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/678 (28%), Positives = 297/678 (43%), Gaps = 98/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ 
Sbjct: 25  DPSRDALLTAFGKATLDDRYLL-----PGESYQDLFARVADAYA----DDEAHAQRLYDY 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W 
Sbjct: 76  ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWG 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 136 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRD------------------- 235

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                        ++ A +L++K++    +TG P+I F D  N   P+ H      V SS
Sbjct: 236 --------GTKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +        +      I   +R LDNV    ID 
Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQWHDNKRFIEDVMRFLDNVLQSYIDN 347

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +  A+ +    R++GLG+MGF S L    IP+    A     +    I+  A  AS
Sbjct: 348 APDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANEAS 407

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LA+ERGA                D+  +    R                         
Sbjct: 408 MMLAKERGACP--------------DAADMGVMER------------------------- 428

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
             S  MAIAPTA+I+ I G  S  I+P   N+Y    +SG F V N +L   L+ +    
Sbjct: 429 -FSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSKDS 487

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           + + + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL++
Sbjct: 488 DTVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNLFI 547

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ +AW +G+K+ YYLRS+S                      + +++  
Sbjct: 548 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------------GFAGGVEADNTPQ 595

Query: 937 SLGIPSSCTSDTECEVCQ 954
              I     +  EC  CQ
Sbjct: 596 MRQIEVEMRNYDECLACQ 613


>gi|283856394|ref|YP_162774.2| ribonucleoside-diphosphate reductase subunit alpha [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|283775393|gb|AAV89663.2| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 613

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/678 (28%), Positives = 297/678 (43%), Gaps = 98/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ 
Sbjct: 25  DPSRDALLTAFGKATLDDRYLL-----PGESYQDLFARVADAYA----DDEAHAQRLYDY 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W 
Sbjct: 76  ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWG 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 136 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRD------------------- 235

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                        ++ A +L++K++    +TG P+I F D  N   P+ H      V SS
Sbjct: 236 --------GTKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +        +      I   +R LDNV    ID 
Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQWHDNKRFIEDVMRFLDNVLQSYIDN 347

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +  A+ +    R++GLG+MGF S L    IP+    A     +    I+     AS
Sbjct: 348 APDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKVNEAS 407

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LA+ERGA                D+  +    R                         
Sbjct: 408 MMLAKERGACP--------------DAADMGVMER------------------------- 428

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
             S  MAIAPTA+I+ I G  S  I+P   N+Y    +SG F V N +L   L+ +    
Sbjct: 429 -FSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSKDS 487

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +A+ + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL++
Sbjct: 488 DAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNLFI 547

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ +AW +G+K+ YYLRS+S                      + +++  
Sbjct: 548 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------------GFAGGVEADNTPQ 595

Query: 937 SLGIPSSCTSDTECEVCQ 954
              I     +  EC  CQ
Sbjct: 596 MRQIEVEMRNYDECLACQ 613


>gi|296282220|ref|ZP_06860218.1| ribonucleotide-diphosphate reductase subunit alpha [Citromicrobium
           bathyomarinum JL354]
          Length = 690

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 199/678 (29%), Positives = 301/678 (44%), Gaps = 93/678 (13%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    + +  A   Y+ 
Sbjct: 97  DSARDANLTEFGKETLEDRYLL-----PGESYQDLFARVADAYA----DDQAHAQRLYDY 147

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S+  FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 148 ISNLWFMPATPVLSNGGTNRGLPISCYLNSVEDSLNGIVDTWNENVWLASKGGGIGTYWG 207

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 208 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM++V     + L SP +                   
Sbjct: 267 RKPSGDFNRKALNLHHGVLVTDEFMEKVRAGEEFDLVSPRD------------------- 307

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V + + A +L++K++     TG P+I F D  N   P+ H      V +S
Sbjct: 308 --------GSVRKTVDARSLFQKLVETRLATGEPYIVFSDTVNSMMPKHHRDLGLKVSTS 359

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +       +++     I   +R LDNV    ID 
Sbjct: 360 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLEKWDEWNSDKQFIEDVMRFLDNVLQDYIDR 419

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++G+G+MGF S L   ++P   P A     +  + IS  A  AS
Sbjct: 420 APPEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNIKMFQHISTAANEAS 479

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LA ERG     +     +                                        
Sbjct: 480 MMLAHERGPCPDAEEMGAME---------------------------------------- 499

Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S  MAIAPTA+I+ IC G S  I+P   N+Y    +SG F V N +L   L ++    
Sbjct: 500 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLQELLAKKSKDS 559

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             + + +    GS+ +++ +  + K I+ T+FEID  WL+E A+ R   IDQAQSLNL++
Sbjct: 560 TNVWNSILERGGSVAHLDFLTPEEKAIYKTSFEIDQRWLLEFAADRSPMIDQAQSLNLFI 619

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++  AW   +K+ YYLRS+S          G  G + A   ++      
Sbjct: 620 PADVDKWDLMMLHFHAWEKKIKSLYYLRSKSIQRA------GFAGGVEADNTSEAAKYEL 673

Query: 937 SLGIPSSCTSDTECEVCQ 954
           + G     T   EC  CQ
Sbjct: 674 AAGTGEQ-TDYEECLACQ 690


>gi|116873588|ref|YP_850369.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116742466|emb|CAK21590.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 764

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 244/794 (30%), Positives = 369/794 (46%), Gaps = 84/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +     +    AR  L KL ++     +         +    Y        E
Sbjct: 70  IREAEARTDIHIAEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    DL+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 125 RGIYSGNILKNYSKEDLIVAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++ K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364

Query: 499 WTLFSPDEVSDLHDLYGKEFEIA------YENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F         +     +    E    + + A+ + ++++  
Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGIGTFREKYEELVADETISKKIVKAIDIMKRIMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRA--VLAEEEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 542

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 543 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 602

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 603 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 648

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 649 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 682

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 683 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 738

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 739 WNEGLKTTYYVRSN 752


>gi|260752514|ref|YP_003225407.1| ribonucleotide-diphosphate reductase subunit alpha [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258551877|gb|ACV74823.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 613

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 197/678 (29%), Positives = 298/678 (43%), Gaps = 98/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F RVA   A    + E  A   Y+ 
Sbjct: 25  DPSRDALLTAFGKATLDDRYLL-----PGESYQDLFARVADAYA----DDEAHAQRLYDY 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT+     SC+L  VPD L GI     EN  LA   GG+G  W 
Sbjct: 76  ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIIDIWNENVWLASRGGGIGTYWG 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL++
Sbjct: 136 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRD------------------- 235

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                        ++ A +L++K++    +TG P+I F D  N   P+ H      V SS
Sbjct: 236 --------GSKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +        +      I   +R LDNV    ID 
Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQWHDNKRFIEDVMRFLDNVLQSYIDN 347

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +  A+ +    R++GLG+MGF S L    IP+    A     +    I+  A  AS
Sbjct: 348 APDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANEAS 407

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LA+ERGA                D+  +    R                         
Sbjct: 408 MMLAKERGACP--------------DAADMGVMER------------------------- 428

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
             S  MAIAPTA+I+ I G  S  I+P   N+Y    +SG F V N +L   L+ +    
Sbjct: 429 -FSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSKDS 487

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +A+ + +   +GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL++
Sbjct: 488 DAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNLFI 547

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ +AW +G+K+ YYLRS+S                      + +++  
Sbjct: 548 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------------GFAGGVEADNTPQ 595

Query: 937 SLGIPSSCTSDTECEVCQ 954
              I     +  EC  CQ
Sbjct: 596 MRQIEVEMRNYDECLACQ 613


>gi|289435503|ref|YP_003465375.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171747|emb|CBH28293.1| ribonucleoside-diphosphate reductase alpha chain [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 763

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 243/794 (30%), Positives = 370/794 (46%), Gaps = 85/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +     +    AR  L KL ++     +         +    Y        E
Sbjct: 70  IREAEARTDIHIAEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    +L+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 125 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 185 WLTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 738 WNEGLKTTYYVRSN 751


>gi|162147607|ref|YP_001602068.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542239|ref|YP_002274468.1| ribonucleotide-diphosphate reductase subunit alpha
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786184|emb|CAP55766.1| Ribonucleoside-diphosphate reductase large subunit
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529916|gb|ACI49853.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 665

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 201/682 (29%), Positives = 299/682 (43%), Gaps = 93/682 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L +RY L       E  Q  F RV+             A   Y+
Sbjct: 65  VNRSRDALLTPFGKATLDNRYLLEG-----ESYQDLFGRVSSYYGA----DPGHAQRLYD 115

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 116 YMSRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 175

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 176 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 234

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ TG D  R+  +++    + D FM+ V ++  W L SP +                 
Sbjct: 235 LRRPTGGDPNRKALNLHHGVLVSDAFMRAVAEDGEWALLSPKD----------------- 277

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                         RKISA +LW ++LT   E G P+I + D  N   P+ H      V 
Sbjct: 278 ----------GAHIRKISARSLWIRILTARMEQGEPYIIYSDHVNNARPEHHKMAGLEVK 327

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
           +SNLC EITL +  +           L +       ++      I   +  LDNV    I
Sbjct: 328 TSNLCAEITLPTGMDHHGNERTAVCCLSSLNLETWDEWKDDPRFIEDVMLFLDNVLQDFI 387

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D     +E+AK +    R++GLG+MGF S L   +IP+ S  A        + I   A  
Sbjct: 388 DRAPDDMERAKYAASRERSVGLGVMGFHSFLQANNIPFESVIAKVWNKRIFKHIREQADL 447

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA+ RG                                                  
Sbjct: 448 ASRKLAELRGPCP------------------------------------------DAAEY 465

Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           G     SN +AIAPTA+I+ I G  S  I+P   N++++  +SG FTV N  L+  L  +
Sbjct: 466 GFMERFSNKLAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLLKLLIDK 525

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E + S +    GS+ +++ +    K +  TAFE+D  W++E A+ R  +I QAQS+
Sbjct: 526 GQNTEEVWSSITLTKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRAGYICQAQSI 585

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           NL+L  +   + L  I+  AW  G+K+ YY RS S    +  T+  V GK++ +      
Sbjct: 586 NLFLPADVHKRDLHQIHYLAWKRGVKSLYYCRSLSIQRAD--TVSNVLGKVDVMADEPSA 643

Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954
            +      P+S  +  EC  CQ
Sbjct: 644 PAPAPASPPASSNNYDECLACQ 665


>gi|284928995|ref|YP_003421517.1| ribonucleoside-diphosphate reductase, subunit alpha [cyanobacterium
           UCYN-A]
 gi|284809454|gb|ADB95159.1| ribonucleoside-diphosphate reductase, alpha subunit [cyanobacterium
           UCYN-A]
          Length = 770

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 224/786 (28%), Positives = 367/786 (46%), Gaps = 86/786 (10%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A K+K+   DG+  + +  ++  +V  ACSG +DV+S  + +     + DG++  D++  
Sbjct: 31  ASKIKVERRDGSWAALDIGKIRAVVSWACSG-KDVNSIALEAGLTTRLRDGITTKDIQNN 89

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +  +   +EP++  V  R  +  L + +L +   +  K         Y       +
Sbjct: 90  LINCTLEMCSPQEPDWRYVAGRLHIWSLWKNILVSRGYQYDK---------YEFTVQTKV 140

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E     + L       +L    + +  + D  ++Y G  +L  RY L       E+PQ  
Sbjct: 141 ENRQYDKRLLT-YSLEELKEAGSWINSDWDIDYDYAGAVLLSSRYLL-----PDELPQEA 194

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            +  A+ LA+ E    +   A  FY  +++     +TP L N       L+SCF+  + D
Sbjct: 195 LLTCALLLAIVEAPQNRLPWAKRFYEAIATRKISLATPILANLRVPEGSLTSCFIIAIDD 254

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  I   +   A ++K  GG+G + + +R  G+ + G    S G+IP++K+ NDTA+AV
Sbjct: 255 DLESICEGVTNAARISKNGGGVGANVSRIRATGSWVMGKANASGGIIPWVKLLNDTAIAV 314

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GA+   ++ WH+D+ EFL+++   GD RR+ +D+     + D FM+RV     
Sbjct: 315 NQGGRRAGAITISVDIWHLDIPEFLEMQTENGDQRRKAYDVFPQLVLTDEFMRRVENKQE 374

Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P EV      +L +L+G+EFE AY   E +    +I +++KI+A  L++ ++   
Sbjct: 375 WTLVDPYEVRTKLGIELAELWGEEFERAYTLIESELGN-KITLYKKINARELFKNIMRSQ 433

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-ETAVCNLGSINLLAHFA 612
            ETG P++ FKD  N  +P +HVG + S NLCTE   N     E+  CNL S+NL     
Sbjct: 434 IETGMPYLAFKDTINRANPNKHVGYIPSVNLCTESFSNVDPRKESHCCNLVSLNLANI-- 491

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               +  ++      AVR+LDN IDI       AK  N  +R IG+G MG    L    +
Sbjct: 492 ----EESEIGYLSSLAVRILDNTIDITNPPFSYAKAHNDRYRTIGVGCMGLADWLAKRFL 547

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y     +    +  E + +     S+EL++ERGAY++F GS W +G        + ++ 
Sbjct: 548 TYDD---INAISQLFEEVGYWCTHTSMELSKERGAYNAFAGSDWSKGKL------IGSKP 598

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            D    N + +  W EL + +KT G+RNS+  AIAP  + + + G + SI P Y   +  
Sbjct: 599 VDWFIENASQKERWVELSENIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYD 658

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G   +   F      +   W         YH+  +                   +D
Sbjct: 659 KWAKGTVPIAPPF-----IKESFW--------FYHENKV-------------------LD 686

Query: 853 PMWLIESASRRQKWIDQAQSL----NLY----LDEPSGK-----KLDFIYRQAWLMGLKT 899
              +I++ S  Q+WID   S+    NL     L E          +  ++  AW  G K 
Sbjct: 687 QQKVIKAVSAIQEWIDTGISMELLFNLNKGIYLPEEPESSLSATDIFKMFVTAWKNGCKA 746

Query: 900 TYYLRS 905
            YY+R+
Sbjct: 747 IYYVRT 752


>gi|313632344|gb|EFR99386.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           seeligeri FSL N1-067]
          Length = 759

 Score =  415 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 243/794 (30%), Positives = 370/794 (46%), Gaps = 85/794 (10%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 6   YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 65

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +     +    AR  L KL ++     +         +    Y        E
Sbjct: 66  IREAEARTDIHIAEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 120

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    +L+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 121 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 180

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++     E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 181 WLTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 240

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 241 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 300

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 301 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 360

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 361 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 420

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 421 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 480

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 481 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 537

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI+AS +LAQE+GAY  FKG
Sbjct: 538 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 597

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+ G              +  A    +   W EL K V   G+RN+  +A+AP  + A
Sbjct: 598 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 643

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I G + SIDP Y   Y +        V+   L                          N
Sbjct: 644 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 677

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +   P   K  +     +D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 678 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 733

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 734 WNEGLKTTYYVRSN 747


>gi|217967765|ref|YP_002353271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus turgidum DSM 6724]
 gi|217336864|gb|ACK42657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dictyoglomus turgidum DSM 6724]
          Length = 749

 Score =  415 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 179/671 (26%), Positives = 291/671 (43%), Gaps = 83/671 (12%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYN 344
                 L IL  RY     NG+ IE P+  F RVA  +A  +   +           FY 
Sbjct: 5   ELTEQALMILEKRYLKKDENGNVIETPEEMFERVAETIAKVDLIYDPNADVEAVKDIFYE 64

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++SS  F+ ++PTL N+G    QLS+CF+  + D L  IF  L+  A++ +  GG G  +
Sbjct: 65  MMSSLEFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTGFSF 124

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +  T G + G + F+KV +     + QGG R+GA    L   H D+ EF+ 
Sbjct: 125 SKIRPKGDIVRSTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRVDHPDIWEFVT 184

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +    D      + N +  + D FM+ V  +  ++L +P                    
Sbjct: 185 CK----DQEGVLSNFNISVAVTDGFMEAVLNDEEFSLINPR------------------- 221

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +V ++I A  L+  ++   ++ G P + F D  N ++P   VG + S+N 
Sbjct: 222 --------NKEVVKRIRAKELFDLIVEQAWKNGEPGVIFIDEINRKNPTPEVGEIESTNP 273

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINC 640
           C E  L         CNLGSINL           + ++DKL +T+  AV  LDNVID N 
Sbjct: 274 CGEQPLLPF----ESCNLGSINLGRMLKKVGDKYEINWDKLRTTVHNAVHFLDNVIDANF 329

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + ++  ++    +R IGLG+MGF   L  L +PY + EA +IA+  M FI   A  AS E
Sbjct: 330 YPLKPIEEMTKANRKIGLGVMGFYDLLIRLEVPYNTKEARDIAENIMSFIQKEAREASQE 389

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERG + ++  S++                                         +RN
Sbjct: 390 LAKERGVFPNWDKSIYRDMGLR-----------------------------------LRN 414

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           +    IAPT +I+ I   S  I+P +   + +    G++  V       L + +L+ E +
Sbjct: 415 ATLTTIAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKENLYSEEL 474

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
           I  +    G+I NI  IP+ LK++  TA +I P   +   +  QK++D A S  + L ++
Sbjct: 475 IEKVI-QKGTIQNITEIPEKLKRLFVTALDISPEDHVLMQASFQKYVDNAVSKTVNLRED 533

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            + + +  IY  A+ + LK     R +S  S   +  K                   ++ 
Sbjct: 534 ATLEDIRKIYLMAYELKLKGITVYRDKSRASQVLAVEKEKKETKERDAHKLIPRPRPTIT 593

Query: 940 IPSSCTSDTEC 950
             ++    T C
Sbjct: 594 KGATIKMRTGC 604


>gi|326386065|ref|ZP_08207689.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209290|gb|EGD60083.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 685

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 199/678 (29%), Positives = 296/678 (43%), Gaps = 96/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G + L DRY L       E  Q  F RVA   A    +    A   Y+ 
Sbjct: 95  DPSRDALLTAFGKETLDDRYLL-----PGETYQDLFARVADAYA----DDAGHAQRLYDY 145

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 146 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVEDSLEGIVATWNENVWLAARGGGIGTYWG 205

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 206 KVRGIGESVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 264

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 265 RKTSGDFNRKALNLHHGVLLTDEFMQAVRDGTEFDLKSPKD------------------- 305

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V  +++A AL++K++ +   TG P+I F D  N   P+ H     +V +S
Sbjct: 306 --------GSVRGRLNARALFQKLVEVRLATGEPYIVFSDTVNRTMPKHHRDLGLMVSTS 357

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLC+EITL +  +           L +       ++ +    I   +R LDNV+      
Sbjct: 358 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLETWEEWHEDKLFIEDVLRFLDNVLQDFIER 417

Query: 643 IEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                     S    R++G+G+MGF S L    I + S  A     +    I+  A  AS
Sbjct: 418 APDEMARAKYSAARERSVGMGVMGFHSFLQKKSIAFESAMAKAWNLKMFRHIAARADEAS 477

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LAQERG                                        D     V     
Sbjct: 478 LLLAQERGPCP-------------------------------------DAADMGVMQ--- 497

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   LK++    
Sbjct: 498 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLKEKSKDS 557

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             + + +    GS+ +++ +  + K ++ T+FEID  WL+E A+ R  +IDQAQSLNLY+
Sbjct: 558 TNVWNSILERGGSVQHLDFLTPEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLNLYI 617

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ QAW  G+K+ YYLRS+S                      D   +  
Sbjct: 618 PADVDKWDLLMLHFQAWEKGIKSLYYLRSKSVQRA----------GFAGGVEADNTPAAP 667

Query: 937 SLGIPSSCTSDTECEVCQ 954
            + + +  T   EC  CQ
Sbjct: 668 VIELEARQTDYEECLACQ 685


>gi|302349050|ref|YP_003816688.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans
           345-15]
 gi|302329462|gb|ADL19657.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans
           345-15]
          Length = 756

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 205/821 (24%), Positives = 361/821 (43%), Gaps = 92/821 (11%)

Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215
                ++    ++A      +    +  E  +      S  +L T  + +  +    +P 
Sbjct: 3   ELTRTKVIAWAKQASRD-AGLDPSQIEFELLR--LQASSPQELFTKALSTFASWSLLDPR 59

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           + +   R +L K+  E  +    K                                    
Sbjct: 60  WEEAARRLILYKIYEEKGSEAPGK------------------------------------ 83

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--- 332
             L  + +           ++GL +LY+RY +   G  +E P     RVA  +A  E   
Sbjct: 84  --LEGIESWA--------TWVGLNLLYERYLVKRKGFVVETPNEALERVASFVAEAELSL 133

Query: 333 -TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
               +    EFY ++SS  FM ++PT+ NSGT++ QL++CF+  + DD+  IF AL   A
Sbjct: 134 GGSLDAARQEFYEIMSSGRFMPNSPTIMNSGTKYHQLAACFVIPLEDDMDSIFSALNTAA 193

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            + K   G G D+TP+RG G+ +    G + G + F+K+ ++ A  + +GG+R+ A+   
Sbjct: 194 WVFKTGAGAGFDFTPLRGRGSPLS-FGGTASGPVSFMKLFDEVADVIKEGGRRRAAMMGV 252

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H+D+E+F++ + + G +     + N +  + D FM     ++ W L+ P+E   L 
Sbjct: 253 LHDVHVDLEDFINSKLSGGLE-----NFNISVGVHDAFMMAAASDSEWNLYDPNECPQLV 307

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            L   +    +               R + A +L  +     +ETG P + F D  N  +
Sbjct: 308 GLLSGDLPDLWRRC---------SPRRTVRASSLLEEAARAAWETGDPGLVFLDTINQHN 358

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           P   +G + ++N C E  L S       CNLGS+NL  +  +   D++ L   IR AVR 
Sbjct: 359 PTPRLGRIRATNPCGETPLLS----WEACNLGSLNLGRYVKDEGIDWELLEHDIRIAVRF 414

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LD+VI+ + +   + + +    R IGLG+MG+   L  L IPY S  A+ +AD+ MEFI+
Sbjct: 415 LDDVIETSWYPRPEIEAAVKRTRKIGLGVMGWADMLAKLKIPYDSDSALYLADKLMEFIA 474

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT--------SR 743
           + A   S  L++ERG Y  F GS+   G F  +     +++ DE  ++           +
Sbjct: 475 YVARDESNRLSRERGPYPEFPGSIHKDGRFNFEPQVSSSQIYDESKVSDAVHSIVNSRPK 534

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L WD ++  +   G RN+    IAPT +I+ I   S SI+P Y  +Y++ +    +  +N
Sbjct: 535 LDWDRVRSEMME-GTRNATMTTIAPTGSISIIADASSSIEPFYSLIYIRQSSLFSWVELN 593

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            FL + L++ +  +   I D+  H GS+  +  +P D++ +  TA +ID  W +   +  
Sbjct: 594 RFLRDWLQESNNLNAEKIKDVIRHGGSVRGLSWVPSDVQAVLGTALDIDWRWHVRMQAVF 653

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Q+W+D A S  + +  + +   +  ++ +AW +  K     R +S      S  + +D  
Sbjct: 654 QRWVDNAVSKTVNMRRDATVDDVKGVFIEAWRLKCKGITVFRDQSKGVQVMSVNQNIDAL 713

Query: 923 LNA-------VPVTDPNSSTHSLGIPSSCTSDT---ECEVC 953
           +         V         +  G   S  S+     C  C
Sbjct: 714 IREPPNLRIRVKAKMVPGVINVEGSALSAVSEEYAGGCPTC 754


>gi|91763117|ref|ZP_01265081.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717530|gb|EAS84181.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 645

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 204/680 (30%), Positives = 294/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY  H      E  Q  F RVA   A    +    A   YN
Sbjct: 51  IDRSRDSKLTDFGRATLKDRYLGHN-----ESYQDLFARVASSYA----DDNLHAQRIYN 101

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 102 YISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYW 161

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  I    GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 162 GNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIE 220

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 221 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDGQWALKSPAD----------------- 263

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V + ISA  LW ++LT   ETG P+I + D  N + PQ H      V 
Sbjct: 264 ----------GTVQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVK 313

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +SNLC+EITL +  ++          L +       ++      I   +R LDNV+    
Sbjct: 314 TSNLCSEITLPTGIDKNGRDRTAVCCLSSLNLEKYDEWKDDNVMINDVMRFLDNVLTDFI 373

Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
               +       S    R++GLG+MGF S L    IP  S  +     +  + I  H   
Sbjct: 374 ERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVDQ 433

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA ERGA                D+       R                       
Sbjct: 434 ASKDLADERGACP--------------DAADYGYNER----------------------- 456

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ ICG  S  ++P   N Y    +SG F V N +LV  L++   
Sbjct: 457 ---FSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHGK 513

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             + + S +  + GS+ +++ + D  K +  TAFE+D  W+IE +  R  +I QAQS+NL
Sbjct: 514 NTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSINL 573

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           ++  +   ++L  I+  AW  GLK+ YY RS+S    E       D K   V      S 
Sbjct: 574 FVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE----NVNDTKATDVNANVYKSK 629

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             +   P       EC  CQ
Sbjct: 630 PQTTEQPE----YEECLSCQ 645


>gi|237738279|ref|ZP_04568760.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420159|gb|EEO35206.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           mortiferum ATCC 9817]
          Length = 748

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 225/829 (27%), Positives = 379/829 (45%), Gaps = 108/829 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G     + K++   + +AC  L+ V+   + S       +G++   ++  LI  +
Sbjct: 4   VVNRAGIKEELDIKKIREKLIKACDNLE-VNMIELESHIDAIYQEGITTKKIQETLITQA 62

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             ++  +E ++  V  R L+ +  REV         K         + +     +++ + 
Sbjct: 63  VAMVSFEESDWTYVAGRLLMMETEREVFHKRGFSYGK---------FLQTVRELVDKKIY 113

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              L     D ++  L   +  +RD  ++Y G  +L +RY +   G+  E+PQ  FM +A
Sbjct: 114 DSRL-GDYSDKEIEELGKYIAPDRDMMYDYAGANMLVNRYLIKYLGNTYELPQEVFMCIA 172

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
           M LA+ E  + + A +FY+ LS      +TP L N       LSSCF+T + D++  IF 
Sbjct: 173 MLLAINEKNRVEIAKKFYDALSLKKISLATPILANLRIPKGNLSSCFITAIDDNIESIFY 232

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            +   A ++K  GG+G + + +R   + ++G    S GV+P++++ NDTAVAVNQ G+R 
Sbjct: 233 NIDTIAKISKNGGGVGVNISRIRAKNSMVNGYYNASGGVVPWIRIINDTAVAVNQQGRRA 292

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GAV   L+TWH+D+E+FL+L+   GD R + +D+     + D+FMKRV ++  WTL  P 
Sbjct: 293 GAVTVALDTWHLDIEKFLELQTENGDQRTKAYDIYPQVVVSDIFMKRVEKDEMWTLVDPY 352

Query: 506 EVSDLHDL-----YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           E+   ++L     YG EFE  Y   E       + + ++I A  L+++++ +  ETG P+
Sbjct: 353 EIRMKYNLELCELYGVEFEKIYLQIENDET---LTLKKRIRARELFKEIMKVQIETGMPY 409

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--SSSEETAVCNLGS----INLLAHFANN 614
           I FKD  N  +   H+G++ + NLC E   N   S   T   N GS    ++L      N
Sbjct: 410 IFFKDRANRMNHNNHIGMIGNGNLCMESFSNFAPSKNYTEEENNGSGVRKVDLGMVHTCN 469

Query: 615 -------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                  + + D+L      AVR+LDN ID+    I ++ + N  +R IG+G MG    +
Sbjct: 470 LVSMNLAEIERDELEDITGIAVRILDNTIDLTETPILESDRHNSNYRTIGVGTMGLADFM 529

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y   E+++  D   E I+ + + AS  LA+ERGAY  FK S+WD+GVF      
Sbjct: 530 AKEFMIYE--ESLDEIDRLYEEIALYTVKASALLAKERGAYPYFKNSMWDRGVFF----- 582

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              + R     N      W+E+   VK  G+RN    A+AP  + + + G + S++P++ 
Sbjct: 583 --QKDRVWYEENSQFADKWNEVFNLVKEYGLRNGELSAVAPNTSTSLLMGATASVNPTFS 640

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             +++ N  G    V  +    LK R  +     +                         
Sbjct: 641 RFFIEKNQKGAVPRVVKY----LKDRAWFYPEFKN------------------------- 671

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLKTTYYLR 904
              +D    ++  SR  KWI Q  S+ L  D       K +   +  AW  G K+ YY+R
Sbjct: 672 ---VDAQTYVKMMSRIGKWITQGVSMELLFDLNKNIRAKDIYDTFLTAWKEGCKSVYYIR 728

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +     ++K+T                          +      ECE C
Sbjct: 729 T-----IQKNT--------------------------NIAKDKEECESC 746


>gi|95930217|ref|ZP_01312955.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133680|gb|EAT15341.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans
           DSM 684]
          Length = 738

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 183/655 (27%), Positives = 304/655 (46%), Gaps = 80/655 (12%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345
                L +L  RY      G  +E P   F RVA  +A  E + +K+A       EFY++
Sbjct: 12  LTNNALTVLERRYLKRDEKGRALETPANMFERVANAIAEAEKKFDKKADTKKVAAEFYDM 71

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 72  ITNLEFLPNSPTLMNAGRELGQLSACFVLPVADSMESIFEAIKNTALIHKSGGGTGFSFS 131

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F+KV +     + QGG R+GA    L   H D+ +F+  
Sbjct: 132 RIRPANDVVLSTKGVSSGPLSFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMC 191

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++    D+    + N +  + + FM+ V  +  + + +P                     
Sbjct: 192 KR----DQTVLTNFNISVGLTEEFMEAVKTDGEYDIINPRT------------------- 228

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V  K+SA  ++  ++ + +  G P I F D  N  +P  H+G + S+N C
Sbjct: 229 --------GEVCDKMSAAKVFDHIVDLAWNNGEPGIIFLDRLNRDNPTPHIGEIESTNPC 280

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + Q D+DKL  T++ +VR LDNVI++N + I +
Sbjct: 281 GEQPLLPY----ESCNLGSINLNRMVKDGQVDWDKLRKTVQKSVRFLDNVIEVNNYPIPE 336

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             + +  +R IGLG+MG+   L  + I Y   EA E+A + M+FI+  A  AS +LA+ER
Sbjct: 337 ITEMSLANRKIGLGIMGWADMLIRVGISYCDQEAAELAAKLMKFINDEAHQASRDLAKER 396

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+ +F+GS+++Q   P                                   +RN+ C  
Sbjct: 397 GAFPNFEGSIFEQRQEPK----------------------------------IRNATCTT 422

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I   S  I+P +   YV+  M  D  V VN       K+R  +   ++  L
Sbjct: 423 IAPTGTISIIANSSSGIEPLFAVSYVRQVMDNDILVEVNPLFEEVAKERGFYSPELM-KL 481

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
               G+I + ++IP+D++++  TA +I P   I   S  QK+ D A S  +   +  +  
Sbjct: 482 IAEKGTIQDFDQIPEDVRRVFVTAHDITPEEHIRMQSAFQKYTDNAVSKTVNFCNSANRD 541

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            +  +Y+ A+  G K     R  S    +  ++K  +   + VP+    ++    
Sbjct: 542 DVAQVYQMAYESGCKGVTIYRDGSR-DAQVLSVKKEEKNESTVPMESKKATRKRD 595


>gi|330814260|ref|YP_004358499.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487355|gb|AEA81760.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 648

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 199/680 (29%), Positives = 292/680 (42%), Gaps = 97/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY         E  Q  F RVA   A    +        YN
Sbjct: 56  IDRSRDSKLTDFGKATLVDRYLNEG-----ESYQDLFARVASTYA----DDNLHGQRIYN 106

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N+GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 107 YMSNLWFMPSTPVLSNAGTERGLPISCFLNEASDSLNGIVDLWSENVWLAAKGGGIGSYW 166

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +    GK+ G++PF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 167 GNLRSIGEQVGRV-GKTSGIMPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIE 225

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  RR  +++    + D FM+ V  +  W L SP +                 
Sbjct: 226 MRRPTGGDPNRRALNLHHGVLVTDAFMRAVELDEQWPLKSPHD----------------- 268

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   +SA  LW ++LT   ETG P+I F D  N   PQ H      V 
Sbjct: 269 ----------GTVQSSMSARNLWIRLLTARVETGEPYIVFIDTVNRMIPQHHKLAGLTVK 318

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +SNLC+EITL +  +++         L +       ++      +   ++ LDNV+    
Sbjct: 319 TSNLCSEITLPTGIDKSGRDRTAVCCLSSLNLETYDEWKDEKIMLEDIMKFLDNVLTDFI 378

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
               ++      +    R++GLG+MGF S L    IP  S  A    ++  + I     +
Sbjct: 379 TRAPESFSDATYAAMRERSVGLGVMGFHSFLQKNSIPIESVMAKVWNNKMFKQIDKEVNA 438

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           ASV+LA+ERG                                        D     +   
Sbjct: 439 ASVKLAEERGPCP-------------------------------------DAADYGIME- 460

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R SN  AIAPTA+I+ ICG  S  I+P   N Y    +SG F V N +L   L + + 
Sbjct: 461 --RFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKQILAKYEK 518

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             + + S +  + GSI ++  + D  K +  TAFEID  WLI+ ++ R  ++ QAQSLN+
Sbjct: 519 DTDEVWSSITTNQGSISHLNFLSDLEKDVFKTAFEIDQRWLIDHSADRTPYVSQAQSLNV 578

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L  +   K L  I+ QAW  GLK+ YY RS+S    E          +N        + 
Sbjct: 579 FLPADVHKKDLHQIHFQAWKKGLKSMYYCRSKSIQRAE---------VINQTVANAAKNQ 629

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                   +  +  EC  CQ
Sbjct: 630 PAEASNGEAA-NYEECLSCQ 648


>gi|309797908|ref|ZP_07692289.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|308118516|gb|EFO55778.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
          Length = 771

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/835 (23%), Positives = 329/835 (39%), Gaps = 91/835 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+
Sbjct: 1   MISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALV 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY++V AR  + K+R++                    + ++  + + +
Sbjct: 61  KSAADLISPEAPNYSQVAARLNIFKIRKDAFGRYDYPN-----------FYQHIVKNVNK 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV  + L       ++  L N +K +RD  F Y     L  +Y     + G   E PQ  
Sbjct: 110 GVYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHI 169

Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           +M V M L            + +    FY++ S+F     TP +    T   Q SSC L 
Sbjct: 170 YMLVGMCLFQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L GI  A            G+G  +  +R LG+ I        GVIPFLK     
Sbjct: 230 ESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTA 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  +R+ 
Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLV 349

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           ++   TLFSP +V D+++ +    + FE  Y  YE      +    + + A+ L+  ++ 
Sbjct: 350 RSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQ 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609
               TG  +I   D  N           V  SNLC EITL +          G I L   
Sbjct: 406 ERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTL 465

Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      + L      AV  LD+++D   + +E A+      R++G+G+  F   L
Sbjct: 466 SAFNLGAIRSLESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNFAYYL 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  G  PID   
Sbjct: 526 AKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPIDHYR 585

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N   ++PW+EL++R+   G+RNS   A  P  T + I   +  I+P   
Sbjct: 586 SSLDESG--ETNFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VKS+  G   +V                                    + LK+ +  
Sbjct: 644 PVSVKSSKDGIVKMVVPEF--------------------------------EKLKEQYEY 671

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899
            +++ D    +   +  QK+ DQA S N          D+     L      A+ MG+KT
Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMGVKT 731

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
            YY  +R                 +     D +   + L    +   + EC+  C
Sbjct: 732 LYYHNTR-----------------DGAGKRDDDEPQNPLAQAVAVEPEDECDGAC 769


>gi|39996969|ref|NP_952920.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           sulfurreducens PCA]
 gi|39983857|gb|AAR35247.1| ribonucleoside-diphosphate reductase, putative [Geobacter
           sulfurreducens PCA]
 gi|298505986|gb|ADI84709.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sulfurreducens KN400]
          Length = 743

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/661 (27%), Positives = 301/661 (45%), Gaps = 82/661 (12%)

Query: 293 FEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345
                + +L  RY     G + +E P   F RVA  +A  +   +K+A       +FY L
Sbjct: 14  LSKNAVTVLEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYEL 73

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++SF F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 74  MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKYTALIHKSGGGTGFSFS 133

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T+G S G I F++V +     + QGG R+GA    L   H D+ +F+  
Sbjct: 134 RLRPAHDVVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMC 193

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +    DD++  ++ N +  + + FM+ V ++A + L +P +                   
Sbjct: 194 K----DDQKHLNNFNISVGLTEAFMEAVERDADYDLINPRD------------------- 230

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    K    ++A  ++ +++   ++ G P I F D  N  +P  HVGV+ S+N C
Sbjct: 231 --------GKPCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHVGVIESTNPC 282

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     N   ++D+L   +R AV  LDNVI++N + + +
Sbjct: 283 GEQPLLPY----ESCNLGSINLGKMVKNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQ 338

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +    +R IGLG+MG+   L LL IPY SP+A+ + ++ M FI+      S ELA  R
Sbjct: 339 ISEMTRANRKIGLGVMGWADMLILLGIPYNSPQAISLGEKVMRFINDEGHVYSRELAAVR 398

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++ +F GS++D                                  R     +RN+    
Sbjct: 399 GSFPNFAGSIYD----------------------------------RASEGPIRNATVTT 424

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I   S  ++P +   +++  +  +  V VN       +QR  + E ++  +
Sbjct: 425 IAPTGTISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPIFEEVARQRGFYSEELMQKI 484

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
             H G+I ++  IP+D++KI  TA +I P   IE  +  QK+ D A S  +      + +
Sbjct: 485 ARH-GTIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNSAAIE 543

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            ++ +YR A+  G K     R  S      ST    D +     V            P +
Sbjct: 544 DVEKVYRLAYKSGCKGVTIYRDGSRDEQVLSTGVKEDKE---KVVQTEEKRAVKRDRPKA 600

Query: 944 C 944
            
Sbjct: 601 L 601


>gi|220980069|emb|CAP72261.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia
           coli LF82]
 gi|323934217|gb|EGB30641.1| ribonucleoside-diphosphate reductase [Escherichia coli E1520]
          Length = 771

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/835 (23%), Positives = 329/835 (39%), Gaps = 91/835 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+
Sbjct: 1   MISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGITTSQLHEALV 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY++V AR  + K+R++                    + ++  + + +
Sbjct: 61  KSAADLISPEAPNYSQVAARLNIFKIRKDAFGRYDYPN-----------FYQHIVKNVNK 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV  + L       ++  L N +K +RD  F Y     L  +Y     + G   E PQ  
Sbjct: 110 GVYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHI 169

Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           +M V M L            + +    FY++ S+F     TP +    T   Q SSC L 
Sbjct: 170 YMLVGMCLFQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L GI  A            G+G  +  +R LG+ I        GVIPFLK     
Sbjct: 230 ESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTA 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  +R+ 
Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLV 349

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           ++   TLFSP +V D+++ +    + FE  Y  YE      +    + + A+ L+  ++ 
Sbjct: 350 RSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQ 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609
               TG  +I   D  N           V  SNLC EITL +          G I L   
Sbjct: 406 ERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTL 465

Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      + L      AV  LD+++D   + +E A+      R++G+G+  F   L
Sbjct: 466 SAFNLGAIRSLESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNFAYYL 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  G  PID   
Sbjct: 526 AKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPIDHYR 585

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N   ++PW+EL++R+   G+RNS   A  P  T + I   +  I+P   
Sbjct: 586 SSLDESG--ETNFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VKS+  G   +V                                    + LK+ +  
Sbjct: 644 PVSVKSSKDGIVKMVVPEF--------------------------------EKLKEQYEY 671

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899
            +++ D    +   +  QK+ DQA S N          D+     L      A+ MG+KT
Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMGVKT 731

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
            YY  +R                 +     D +   + L    +   + EC+  C
Sbjct: 732 LYYHNTR-----------------DGAGKRDDDEPQNPLTQAVAVEPEDECDGAC 769


>gi|71083846|ref|YP_266566.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062959|gb|AAZ21962.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 645

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 203/680 (29%), Positives = 293/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY         E  Q  F RVA   A    +    A   YN
Sbjct: 51  IDRTRDSKLTDFGKATLKDRYLGQN-----ESFQDLFARVASSYA----DDNLHAQRIYN 101

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM +TP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 102 YISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYW 161

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  I    GK+ G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF++
Sbjct: 162 GNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIE 220

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 221 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPAD----------------- 263

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V + ISA  LW ++LT   ETG P+I + D  N + PQ H      V 
Sbjct: 264 ----------GTVQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVK 313

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +SNLC+EITL +  ++          L +       ++      I   +R LDNV+    
Sbjct: 314 TSNLCSEITLPTGIDKNGRDRTAVCCLSSLNLEKYDEWKDDNVMINDVMRFLDNVLTDFI 373

Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
               +       S    R++GLG+MGF S L    IP  S  +     +  + I  H   
Sbjct: 374 ERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVDQ 433

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS +LA ERGA                D+       R                       
Sbjct: 434 ASKDLADERGACP--------------DAADYGYNER----------------------- 456

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ ICG  S  ++P   N Y    +SG F V N +LV  L++   
Sbjct: 457 ---FSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHGK 513

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             + + S +  + GS+ +++ + D  K +  TAFE+D  W+IE +  R  +I QAQS+NL
Sbjct: 514 NTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSINL 573

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           ++  +   ++L  I+  AW  GLK+ YY RS+S    E       D K   V      S 
Sbjct: 574 FVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE----NVNDTKATDVNANVYKSK 629

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             +   P       EC  CQ
Sbjct: 630 PQTTEQPE----YEECLSCQ 645


>gi|197103807|ref|YP_002129184.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Phenylobacterium zucineum HLK1]
 gi|196477227|gb|ACG76755.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Phenylobacterium zucineum HLK1]
          Length = 619

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/679 (29%), Positives = 295/679 (43%), Gaps = 101/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+
Sbjct: 33  VDRSRDANLTDFGKTTLEDRYLL-----PGESYQDMFARVATAFA----DDADHAQRIYD 83

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM +TP L N G       SCFL  VPD+L GI     EN  LA   GG+G  W
Sbjct: 84  YISNLWFMPATPVLSNGGASRGLPISCFLNAVPDNLDGIVSVWNENVALASNGGGIGTYW 143

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 144 GGVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 202

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V   A + L SP                    
Sbjct: 203 IRKPSGDFNRKSLNLHHGLSITDEFMEAVRDGAMFGLRSPKT------------------ 244

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                     +V R++ A +LW+K+L +  +TG P++ F D  N   PQ        V  
Sbjct: 245 ---------GEVIREVDARSLWQKILEIRLQTGEPYLIFSDTVNRAMPQHQRELGLQVRQ 295

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLC+EI L++  +           L +  A    ++    + I   +R LDNV++   H
Sbjct: 296 SNLCSEIMLHTGQDHLGQERTAVCCLSSVNAEKFLEWRDHPTFIEDVMRFLDNVLEDFIH 355

Query: 642 TIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                 K    +    R++GLGLMGF S L   ++P+ S  A        + +     +A
Sbjct: 356 RAPPEMKNAVYAAKRERSVGLGLMGFHSFLQQQNVPFESALAKSWNMRLFKTLRRQCDAA 415

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA ERG                                        D  ++ V    
Sbjct: 416 SRTLAAERGPCP-------------------------------------DAAERGVME-- 436

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L ++   
Sbjct: 437 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYSHKTLSGTFAVKNPYLERLLDEKGQN 495

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A+   +  ++GS+ ++E +  D K +  TAFEID  W++E A+ R   I Q+QS+NL+
Sbjct: 496 TAAVWDSILANEGSVQHLEFLSQDEKDVFKTAFEIDQRWIVELAADRTPDICQSQSVNLF 555

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  G K+ YYLRS+S                         ++ 
Sbjct: 556 LPGDIDKWDLHMLHWTAWERGCKSLYYLRSKSVQRA---------------AHAGGEAAQ 600

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                    T   EC  CQ
Sbjct: 601 AVEMQVEGKTDYEECLACQ 619


>gi|293411956|ref|ZP_06654681.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
 gi|291469511|gb|EFF12000.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B354]
          Length = 771

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/835 (23%), Positives = 329/835 (39%), Gaps = 91/835 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G     + ++   +V     G++ VS+  V      +++DG++ S L  AL+
Sbjct: 1   MISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALV 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY++V AR  + K+R++                    + ++  + + +
Sbjct: 61  KSAADLISPEAPNYSQVAARLNIFKIRKDAFGRYDYPN-----------FYQHIVKNVNK 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV  + L       ++  L N +K +RD  F Y     L  +Y     + G   E PQ  
Sbjct: 110 GVYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHI 169

Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           +M V M L            + +    FY++ S+F     TP +    T   Q SSC L 
Sbjct: 170 YMLVGMCLFQNWEDDCAGKTRMEMVKGFYDITSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L GI  A            G+G  +  +R LG+ I        GVIPFLK     
Sbjct: 230 ESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTA 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA  A+   WH++VE  L ++ N G D  R   ++       L  +R+ 
Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLV 349

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           ++   TLFSP +V D+++ +    + FE  Y  YE      +    + + A+ L+  ++ 
Sbjct: 350 RSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQ 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609
               TG  +I   D  N           V  SNLC EITL +          G I L   
Sbjct: 406 ERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTL 465

Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      + L      AV  LD+++D   + +E A+      R++G+G+  F   L
Sbjct: 466 SAFNLGAIRSLESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNFAYYL 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
               + Y+     ++  E+ E I ++ + AS  LA+ +G    F+ + +  G  PID   
Sbjct: 526 AKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPIDHYR 585

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       N   ++PW+EL++R+   G+RNS   A  P  T + I   +  I+P   
Sbjct: 586 SSLDESG--ETNFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VKS+  G   +V                                    + LK+ +  
Sbjct: 644 PVSVKSSKDGIVKMVVPEF--------------------------------EKLKEQYEY 671

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899
            +++ D    +   +  QK+ DQA S N          D+     L      A+ MG+KT
Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMGVKT 731

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
            YY  +R                 +     D +   + L    +   + EC+  C
Sbjct: 732 LYYHNTR-----------------DGAGKRDDDEPQNPLTQAVAVEPEDECDGAC 769


>gi|237678831|emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii]
          Length = 645

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 196/684 (28%), Positives = 294/684 (42%), Gaps = 100/684 (14%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
                L   RD      G   + DRY L       E+ Q  F RV+   A    +    A
Sbjct: 53  RADLKLDRTRDDLLTPFGKLTVTDRYLL-----AGELLQDMFARVSCAFA----DDVAHA 103

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              Y+ +S   FM +TP L N GT      SCFL +V D L GI G   EN  LA   GG
Sbjct: 104 QRLYDAMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGG 163

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G  W  VR +G  +    G + G+IPF+ V +   +A++QG  R+G+   YL+  H ++
Sbjct: 164 IGTYWGNVRSIGEKVK--GGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEI 221

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEFL++RK +GD  R++ +++    + D FM+ V     + L SP               
Sbjct: 222 EEFLEIRKASGDFNRKSLNLHHGINVTDAFMRAVGAGTAFALRSPRTND----------- 270

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-- 577
                           V R+I A  LW+++L    +TG P++ F D  N   P+      
Sbjct: 271 ----------------VIREIDARQLWQRILENRLQTGEPYLLFIDTVNRSLPKHQRELG 314

Query: 578 -VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635
             V +SNLC+EITL +  +           L +        +++    I   +R LDNV 
Sbjct: 315 LKVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWNEKPGFIEDVMRFLDNVL 374

Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
              I +    +++A+ +    R++GLG+MGF S L    IP  S  A          I  
Sbjct: 375 THFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMESVVAKSFNLNMFRKIRR 434

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A +ASV LA+ERG                                        D L++ 
Sbjct: 435 DADAASVTLARERGPCP-------------------------------------DALERG 457

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
           V     R S+ +AIAPTA+I+ ICG  S  ++P   N+Y    +SG  +V N  L   L 
Sbjct: 458 VMA---RFSHKIAIAPTASISIICGGTSACVEPIPANIYTHKTLSGAISVRNPHLAKLLA 514

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
            +     A    +  H+GS+ +++ + +  K +  TAFEID  W++E A+ R  +I Q+Q
Sbjct: 515 AKGADTSATWQSIIAHEGSVAHLDTLSEHEKAVFRTAFEIDQRWIVELAADRAAFICQSQ 574

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S+NLYL  +     L  ++  AW  G+K+ YY RS+S +               A     
Sbjct: 575 SINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRA-------------AFAGNI 621

Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954
            +    +   P   T   EC  CQ
Sbjct: 622 ADGDNAAPPQPQRHTDYEECLACQ 645


>gi|219849633|ref|YP_002464066.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           aggregans DSM 9485]
 gi|219543892|gb|ACL25630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus aggregans DSM 9485]
          Length = 820

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/660 (25%), Positives = 289/660 (43%), Gaps = 46/660 (6%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFY 343
               +   +L  RY L    G  IE P+  F RVA  +A  +          E+RA  FY
Sbjct: 10  QLTDIARTVLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASSEQVEERAERFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L++  +F  ++PTL N+G    QLS+CF+  + D+L  I+  L+  A++ +  GG G  
Sbjct: 70  HLMTQGYFEPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F+ V N +  A+ QGG R+GA    L   H D+ EF+
Sbjct: 130 FSRLRPRNDVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D  +  + N +  + D FM+ V ++  + L +P        ++    +    
Sbjct: 190 TCKL----DTTKITNFNISVAVTDAFMRAVDRDEEYDLINPRTG----QVHIASRDGLKH 241

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +  R + A  ++  ++     TG P + F D  N  +P  H+G   ++N
Sbjct: 242 PLTGDVLVPPGQPMR-LRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGAYEATN 300

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C E  L +      VCNLGSINL      +   D+D L   +  + R LDNVID N + 
Sbjct: 301 PCGEQPLLAY----DVCNLGSINLGKFVTADKTIDWDYLREVVHESTRFLDNVIDANHYP 356

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E+    +   R IGLG+MG+   L  L IPY S +A+E+A + M FI   +  AS +LA
Sbjct: 357 LEQITHLSQRIRRIGLGVMGWADMLVRLGIPYNSHDAIELARKVMHFIDEESKVASEQLA 416

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG +  ++ S+W                R + +  R  RL             +RN N
Sbjct: 417 RERGPFPEWEYSIWGP--------DATCARRSDGSRIRPQRL-------------LRNCN 455

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
              +APT TI+ I G S  I+P +   + +         +N   V + K+   +   ++ 
Sbjct: 456 VTTVAPTGTISIIAGCSSGIEPLFAIAFWRYQADSRMLDINQDFVAQAKREGWYSPELME 515

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +    G I +   +P +++++  TA +I P W +   +  Q++ D A S  +    E +
Sbjct: 516 RIADT-GHIHH-PDVPAEVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEAT 573

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             ++   Y  A+ +G K     R  S  +   ST      +      +   +       P
Sbjct: 574 PDQVREAYELAFRLGCKGITVYRDGSRENQVLSTGSTGKSESKPAAQSATTTPVELTPRP 633


>gi|253701670|ref|YP_003022859.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter sp.
           M21]
 gi|251776520|gb|ACT19101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M21]
          Length = 744

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 181/661 (27%), Positives = 305/661 (46%), Gaps = 80/661 (12%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345
                L +L  RY      G  +E     F RVA  +A  +   +K+      + +FY +
Sbjct: 13  LTKNALTVLEKRYLKRDQTGKPLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYTM 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++F F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++
Sbjct: 73  MTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  
Sbjct: 133 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMC 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+R+ ++ N +  I + FMK V  +  +TLF+P +                   
Sbjct: 193 K----SDQRQLNNFNISVGITEAFMKAVDADEEYTLFNPRDKQ----------------- 231

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                        K +A  ++ +++   +E G P I F D  N  +P  H+G + S+N C
Sbjct: 232 ----------PAGKQNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + + D+DKL   +RT+V  LDNVI++N + +++
Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQ 337

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +   ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+    +AS +LA+ R
Sbjct: 338 IDEMTRSNRKIGLGVMGWADMLIMLGIPYGSAESVELGEKVMQFINDEGHAASRQLAKTR 397

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+ +FKGS++D+                                       +RN+    
Sbjct: 398 GAFPNFKGSVYDKPGAEP----------------------------------IRNATVTT 423

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I   S  ++P +   YV+  M  +  V VN       K    + + ++  +
Sbjct: 424 IAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRI 483

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
             H G++ +I  IP+ ++++  TA +I P   I   +  Q+  D A S  +    E + +
Sbjct: 484 AEH-GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIE 542

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            ++ +YR A+    K     R  S      S  K  + K  A PV   +  T     P +
Sbjct: 543 DVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAKA-AAPVHVEDKRTAKRERPKA 601

Query: 944 C 944
            
Sbjct: 602 L 602


>gi|163847312|ref|YP_001635356.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525156|ref|YP_002569627.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus
           sp. Y-400-fl]
 gi|163668601|gb|ABY34967.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus aurantiacus J-10-fl]
 gi|222449035|gb|ACM53301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/661 (26%), Positives = 291/661 (44%), Gaps = 47/661 (7%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFY 343
               +   +L  RY L    G  IE P+  F RVA  +A  +          E+RA  FY
Sbjct: 10  NLTDIARTVLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASAEQVEERAERFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L++  +F  ++PTL N+G    QLS+CF+  + D+L  I+  L+  A++ +  GG G  
Sbjct: 70  HLMTQGYFEPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F+ V N +  A+ QGG R+GA    L   H D+ EF+
Sbjct: 130 FSRLRPRNDVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D  +  + N +  I D FM+ V ++  + L +P                   
Sbjct: 190 TCKL----DTTKITNFNISVAITDAFMRAVERDEEYDLINPRTGLGQIASRDGL--KHPL 243

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             E     G+     ++ A  ++  ++     TG P + F D  N  +P  H+G   ++N
Sbjct: 244 TGEVLVPAGQP---MRLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGEYEATN 300

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C E  L +      VCNLGSINL     +    D++ L   +  + R LDNVID N + 
Sbjct: 301 PCGEQPLLAY----DVCNLGSINLGKFVTDAGTIDWESLRDVVHESTRFLDNVIDANHYP 356

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E+  + +   R IGLG+MG+   L  L IPY S +A+++A + M FI   +  AS +LA
Sbjct: 357 LEQITQLSQRIRRIGLGVMGWADMLVRLGIPYNSAQAIDLARQVMRFIDEESKVASEQLA 416

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG +  ++ S+W                R + +  R  RL             +RN N
Sbjct: 417 RERGPFPEWEYSIWGP--------DATCARRPDGSRIRPQRL-------------LRNCN 455

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
              +APT TI+ I G S  I+P +   + +         +N   V + K+   + + ++ 
Sbjct: 456 VTTVAPTGTISIIAGCSSGIEPLFAIAFWRYQADTRMLDINQDFVAQAKREGWYSDELME 515

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +    G I +   +P  ++++  TA +I P W +   +  Q++ D A S  +    E +
Sbjct: 516 RIADT-GHIHH-PEVPASVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEAT 573

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             ++   Y  A+ +G K     R  S  +   ST           P +D         +P
Sbjct: 574 PDQVREAYELAFRLGCKGITVYRDGSRANQVLSTGS-TGKSAEPAPASDQPVELKPRPVP 632

Query: 942 S 942
           +
Sbjct: 633 A 633


>gi|329888547|ref|ZP_08267145.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           diminuta ATCC 11568]
 gi|328847103|gb|EGF96665.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           diminuta ATCC 11568]
          Length = 599

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 200/679 (29%), Positives = 297/679 (43%), Gaps = 94/679 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L   RD      G + L DRY L       E  Q  F RVA   A    +    A   Y+
Sbjct: 6   LDRTRDALLTEFGKKTLEDRYLL-----AGESYQDMFARVATAYA----DDADHAQRVYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL +V D L GI     EN  LA   GG+G  W
Sbjct: 57  YMSKLWFMPATPVLSNGGADRGLPISCFLNSVNDSLDGIQNVWNENVSLASNGGGIGTYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 117 GGVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 175

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  RR+ +++    I D FM+ V     + L SP                    
Sbjct: 176 IRKPSGDFNRRSLNLHHGINITDAFMEAVRDGKPFDLISPK------------------- 216

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                     +V + + A  LW K+L +  +TG P++ F D  N + PQ        V  
Sbjct: 217 --------NGEVRKTVDARNLWTKILEIRMQTGEPYLIFSDTVNRQMPQHQKDLGLSVKQ 268

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLC+EI L++  +   V       L +  A    ++ +    I   +R LDNV++    
Sbjct: 269 SNLCSEIMLHTGLDHKGVERTAVCCLSSVNAETFLEWREEPRFIEDIMRFLDNVLEDFIT 328

Query: 642 TIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
               +      S    R++GLGLMGF S L    + + S  A        + +   A  A
Sbjct: 329 RAPSSMAAAVYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADKA 388

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA+E+G                                        D   + V    
Sbjct: 389 SRTLAEEKGPCP-------------------------------------DAADRGVME-- 409

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L + L ++ + 
Sbjct: 410 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLQDLLGEKGID 468

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            EA+ S +  ++GS+ +++ + DD K I+ TAFE+D  W+IE A+ R   I QAQSLNL+
Sbjct: 469 TEAVWSSILENEGSVQHLDALSDDEKAIYKTAFELDQRWVIELAADRTGDICQAQSLNLF 528

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +  + +   L  ++  AW  GLK+ YYLRS+S                      +     
Sbjct: 529 IPGDVNKWDLHMLHWSAWERGLKSLYYLRSKSVQRA--------AFAGAEDKKEEEIDPN 580

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                  + T   EC  CQ
Sbjct: 581 QPDLFSIARTDYDECLACQ 599


>gi|85375154|ref|YP_459216.1| ribonucleotide-diphosphate reductase subunit alpha [Erythrobacter
           litoralis HTCC2594]
 gi|84788237|gb|ABC64419.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 681

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 205/679 (30%), Positives = 306/679 (45%), Gaps = 93/679 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G + L DRY L       E  Q  F RVA   A    + ++ A   Y+
Sbjct: 87  IDESRDVNLTEFGKETLIDRYLL-----PGEKFQDLFARVADAYA----DDQEHAQRLYD 137

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SC+L +V D L GI G   EN  LA   GG+G  W
Sbjct: 138 YISRLWFMPATPVLSNGGTNRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTYW 197

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   Y++  H ++EEFL+
Sbjct: 198 GNVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDIHHPEIEEFLE 256

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R+  +++    I D FM+ V + A + L SP +                  
Sbjct: 257 IRKPSGDFNRKALNLHHGVLITDAFMEAVREGAEFDLKSPKD------------------ 298

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V   + A +L++K++     TG P+I F D  N   P+ H      V +
Sbjct: 299 ---------GSVRGTVDARSLFQKLVETRLATGEPYIVFADTVNRMMPKHHRDLGLKVST 349

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EITL +  +           L +       +++     I   +R LDNV    ID
Sbjct: 350 SNLCSEITLPTGVDHLGNDRTAVCCLSSLNLEKWDEWNGEKDFIEDVMRFLDNVLQDYID 409

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +AK S    R++G+G+MGF S L   ++P   P A    D+  + I   A  A
Sbjct: 410 RAPDEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNDKMFKQIHAKANEA 469

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ LA+ERG     +     +                                       
Sbjct: 470 SMLLAKERGPCPDAEEMGAME--------------------------------------- 490

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   LK++   
Sbjct: 491 -RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLKKKSKD 549

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A+ + +    GS+ +++ +  + K +  T+FEID  +L+E A+ R  +IDQAQSLNL+
Sbjct: 550 STAVWNSILERGGSVAHLDFLTPEEKAVFKTSFEIDQRYLLEFAADRAPYIDQAQSLNLF 609

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +  +     L  ++ QAW  G+K+ YYLRS+S          G  G + A    D     
Sbjct: 610 IPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA------GFAGGVEADNTKDAAQFE 663

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            S       T   EC  CQ
Sbjct: 664 LSAQAGEE-TDYEECLSCQ 681


>gi|197117589|ref|YP_002138016.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197086949|gb|ACH38220.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter bemidjiensis Bem]
          Length = 744

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 183/662 (27%), Positives = 308/662 (46%), Gaps = 82/662 (12%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345
                L +L  RY      G  +E     F RVA  +A  +   +K+      + +FYN+
Sbjct: 13  LTKNALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNM 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++F F+ ++PTL N+G    QLS+CF+  V D +  IF +++  A++ K  GG G  ++
Sbjct: 73  MTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  
Sbjct: 133 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMC 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+R+ ++ N +  I + FMK V  +  +TL++P +                   
Sbjct: 193 KA----DQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRDKQ----------------- 231

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                        K +A  ++ +++   +E G P I F D  N  +P  H+G + S+N C
Sbjct: 232 ----------PAGKQNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + + D+DKL   +RT+V  LDNVI++N + +++
Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQ 337

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +   ++R IGLG+MG+   L +L IPY S E+VE+ ++ M+FI+    +AS +LA+ R
Sbjct: 338 IDEMTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTR 397

Query: 706 GAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           GA+ +FKGS++D+ G  P                                   +RN+   
Sbjct: 398 GAFPNFKGSVYDKLGAEP-----------------------------------IRNATVT 422

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   YV+  M  +  V VN       K    + + ++  
Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQR 482

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
           +  H G++ +I  IP+ ++++  TA +I P   I   +  Q+  D A S  +    E + 
Sbjct: 483 IAEH-GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATI 541

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           + ++ +YR A+    K     R  S      S  K  + K  A PV   +  T     P 
Sbjct: 542 EDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEVKA-AAPVHVEDKRTGKRERPK 600

Query: 943 SC 944
           + 
Sbjct: 601 AL 602


>gi|18466787|ref|NP_569594.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16506103|emb|CAD09989.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
          Length = 771

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 208/840 (24%), Positives = 336/840 (40%), Gaps = 101/840 (12%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+
Sbjct: 1   MISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALV 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY++V AR  L K+R++                    +  +    +  
Sbjct: 61  KSAADLISPETPNYSQVAARLSLFKIRKDAFGQYDYPN-----------FYNHIVSNVSR 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    L +     ++  L   +K +RD  F Y     L  +Y     + G+  E PQ  
Sbjct: 110 GVYDEDLLKYYSQEEIAELGVYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQL 169

Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           +M V M L            + +    FY++ S+F     TP +    T   Q SSC L 
Sbjct: 170 YMLVGMCLFQNWEDGCAGKTRLEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L GI  A            G+G  +  +R LG+ I        GVIPFLK     
Sbjct: 230 EAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTA 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  L  +R+ 
Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLV 349

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           +N   TLFSP +V  L+D +     +FE  Y  YE      E    + I AV L+  ++ 
Sbjct: 350 RNENITLFSPHDVPGLYDAFFVDQDKFEELYLKYEAD----ESIRKKSIPAVDLFSTLMQ 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNS--------SSEETAVCNL 602
               TG  +I   D  N           VH SNLC EITL +        S+ E A+C L
Sbjct: 406 ERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDSNGEIALCTL 465

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            + NL A         D L      AV  LD+++D   + +  A+      R++G+G+  
Sbjct: 466 SAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTN 520

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
           F   L      Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + + QG  P
Sbjct: 521 FAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLP 580

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           +D      +       +   ++PW+EL+ R++  G+RNS   A  P  T + I   +  I
Sbjct: 581 VDHYRKTLDT--NPETSFELKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGI 638

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VKS+  G   +V                                      LK
Sbjct: 639 EPPRGPVSVKSSKDGIVKMVVPDFAQ--------------------------------LK 666

Query: 843 KIHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWL 894
             +   +++ D    +   +  QK+ DQA S N          D+    KL      A+ 
Sbjct: 667 DQYEYLWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDLLFAYQ 726

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
            G+KT YY           +T  G   + +   V++P+++            + EC+  C
Sbjct: 727 QGVKTLYY----------HNTRDGAGKRDDDDQVSEPSAAEVVEP-------EDECDGAC 769


>gi|78222511|ref|YP_384258.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193766|gb|ABB31533.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 742

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 178/662 (26%), Positives = 301/662 (45%), Gaps = 84/662 (12%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNL 345
                  +L  RY     +G  +E P   F RVA  +A+ +   +K+A       +FY+L
Sbjct: 13  LSKNARTVLEKRYLKRDTDGRVLETPADMFRRVAEAIAVADRNFDKKADTKALAQKFYDL 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++SF F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 73  MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T+G S G I F++V +     + QGG R+GA    L   H D+ +F+  
Sbjct: 133 RLRPANDVVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMC 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +    DD++  ++ N +  + + FM+ V ++A + L +P +                   
Sbjct: 193 K----DDQKHLNNFNISVGLTEAFMEAVERDADYDLRNPRD------------------- 229

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    K    ++A  ++ +++   ++ G P I F D  N  +P  H+G + S+N C
Sbjct: 230 --------GKPCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     N   D+ +L   IR  V  LDNVI++N + + +
Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVNNGDVDWKRLREVIRLGVHFLDNVIEVNNYPLPQ 337

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                 ++R IGLG+MG+   L LL IPY+SPEA+ + ++ M FI+    + S ELA  R
Sbjct: 338 INDMTRSNRKIGLGVMGWADMLILLGIPYSSPEAISLGEKVMRFINDEGHAYSRELAAVR 397

Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           GA+ +F GS +D  G  P                                   +RN+   
Sbjct: 398 GAFPNFVGSTFDRPGEGP-----------------------------------IRNATVT 422

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   +V+  +  +  V VN       + +  + E ++  
Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSFVRQVLDKNILVEVNPIFEEIARDQGFYSEELMQK 482

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
           +  H G++ ++  IP+D++K+  TA +I P   IE  +  QK+ D A S  +      + 
Sbjct: 483 IAQH-GTVHDLAEIPEDIRKVFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNAATI 541

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           ++++ +YR A+ +  K     R  S      ST    + +     V            P 
Sbjct: 542 EEVEKVYRLAYKLECKGVTIYRDGSRDEQVLSTGAKEEKE---KVVQTEEKRAVKRDRPK 598

Query: 943 SC 944
           + 
Sbjct: 599 AL 600


>gi|70607111|ref|YP_255981.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639]
 gi|68567759|gb|AAY80688.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639]
          Length = 837

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 195/828 (23%), Positives = 352/828 (42%), Gaps = 116/828 (14%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202
           K+K++  +G    F ++++   +      L +V    +L +  +N  +  +    L   +
Sbjct: 12  KIKVLKRNGGYEQFKAEKVFSKLGS----LPEVVMDGILQDVLQNSKENAIDTRALADIV 67

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +      + PN   +  R++L ++   V                              
Sbjct: 68  ERNLIEHSLEYPNLMDLAKRYVLARIYNHVYGK--------------------------- 100

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320
                       +FD           RD    Y  L++L  RY L        IE PQ  
Sbjct: 101 --------GKWKEFD----------SRDLLISYNALKVLEARYLLKDPNTLRYIETPQMM 142

Query: 321 FMRVAMGLA-------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
           F RVA  +A         E + ++   + Y ++S+  F+ +TP L NSGTR   LS+CF+
Sbjct: 143 FRRVARHIANVEKLYGKDEKQVKEIEDKLYEMMSNLKFIPNTPALMNSGTRLGILSACFV 202

Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             V D +      GI+ AL+  A++ +  GG G D++ +R  G  +  T G + G + F+
Sbjct: 203 IPVRDAMSTPNGDGIYDALRAMALVHQQGGGTGFDFSELRPKGDIVASTAGVASGPVSFM 262

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           ++ + +   V QGGKR+GA    +  WH DV++F+  +     D     + N +  + D 
Sbjct: 263 RIFDVSTDVVKQGGKRRGANMGVMHAWHADVQDFIRAKTGELRD-THLQNFNISVGVYDY 321

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-------------------- 528
           FM  V +     L +P +       +      A      +                    
Sbjct: 322 FMNAVERGEAVPLINPRKTRIPGKDWDYYMTNARGYMHDESVQEYILKELEEKGGSVYLD 381

Query: 529 ------------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                           E  + + ++A  L+ +++   +++G P + F D  N R P  ++
Sbjct: 382 ESRIITVDEALVIAEKENAIVQWVNARQLFDEIVKGAWDSGDPGLLFIDEINRRHPVWYI 441

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVL 632
           G ++++N C E  L         CNLGSI+L             D+D L   I+  VR L
Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSISLEKFVVEKDGKMSIDWDGLVEAIKYGVRFL 497

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNVID N + +++ +++    R +GLG+MG    L  L IPY S +A+ I+ +  +FI +
Sbjct: 498 DNVIDANRYPLKQIEEATKKTRKVGLGVMGLARMLIKLGIPYDSVDALYISYQLAKFIYY 557

Query: 693 HAISASVELAQERGAYS---------SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           HA+  S++LA+E+G++           ++ +     +  + +I        +       R
Sbjct: 558 HALKTSIDLAKEKGSFPAYDPYYYHDIWESARDFGSLLEVSNIKDKPSDYVKKLTEVVDR 617

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
           L +  LK+     G+RNS  +++APT TI+ I G S SI+P +   +V++   G F  ++
Sbjct: 618 LDFSLLKEERIKFGLRNSTVVSVAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              +  L++ +L D  ++  +    G++     IP  +KK+  TA E+ P + +   +  
Sbjct: 678 PLFLEYLRKYELDDPEVVQKIAET-GTVAENPFIPRTMKKLFRTAHEVPPEYHVLHQAMW 736

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           Q+W D   S  + L  E   + ++ +Y  AW +G+K     R RS + 
Sbjct: 737 QQWNDSGTSKTINLKSEEPPETVEKVYMLAWKLGIKGVTVYRDRSKSQ 784


>gi|294013208|ref|YP_003546668.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium
           japonicum UT26S]
 gi|292676538|dbj|BAI98056.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium
           japonicum UT26S]
          Length = 731

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 195/678 (28%), Positives = 293/678 (43%), Gaps = 97/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F      +A    +    A   Y+ 
Sbjct: 142 DASRDALLTDFGKDTLQDRYLL-----PGESYQDLF----ARVAAAYADDADHAQRVYDY 192

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 193 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 252

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 253 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 311

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM+ V     + L SP +                   
Sbjct: 312 RKTSGDFNRKALNLHHGVLLTDEFMEAVRDGKEFALRSPKDQ------------------ 353

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   ++A AL++K++ +   TG P+I F D  N   P+ H      V +S
Sbjct: 354 ---------SVRGSVNARALFQKLVEVRLATGEPYIVFNDTVNRTMPKHHRDLGLKVSTS 404

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +       ++      +   +R LDNV    ID 
Sbjct: 405 NLCSEITLPTGRDHIGNDRTAVCCLSSLNLETWDEWKDDRQFVEDVMRFLDNVLQDYIDR 464

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++GLG+MGF S L    +P+    A        + ++     AS
Sbjct: 465 APPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHVNEKVNEAS 524

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           ++LA ERG                 D+  +    R                         
Sbjct: 525 MQLAVERGPCP--------------DAADMGVMER------------------------- 545

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
             S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L  +    
Sbjct: 546 -FSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKAKDS 604

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            A+ + +    GS+ +++ +  + K +  T+FEID  WL+E A+ R  +IDQAQSLNL++
Sbjct: 605 TAVWNSILEKGGSVQHLDFLSQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLNLFI 664

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ +AW +G+K+ YYLRS+S                 A  V   N+   
Sbjct: 665 PADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRA-----------GFAGGVEADNTIDA 713

Query: 937 SLGIPSSCTSDTECEVCQ 954
                   T   EC  CQ
Sbjct: 714 PKFEIGETTDYDECLACQ 731


>gi|254303615|ref|ZP_04970973.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323807|gb|EDK89057.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 755

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 233/843 (27%), Positives = 383/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACEGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  +   +E +++ V  R L+ +  REV  +                    F + I + V
Sbjct: 66  AVAMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLSYTEEELNQIAQLIDVNRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172

Query: 322 MRVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E     + +   EFYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKAGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEEGNTSIRRSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      ++L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------EELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLI 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|254455714|ref|ZP_05069143.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082716|gb|EDZ60142.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 645

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 200/696 (28%), Positives = 290/696 (41%), Gaps = 100/696 (14%)

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330
             +   D   +   +   +D      G   L DRY  H      E  Q  F RVA   A 
Sbjct: 38  TELFQNDKGIIIK-IDRSKDANLTDFGKATLKDRYLGHN-----ESFQDLFARVASSYA- 90

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390
              +    A   YN +S+  FM +TP L N GT+     SCFL    D L GI     EN
Sbjct: 91  ---DDNLHAQRIYNYISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLGGILDLWSEN 147

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             LA   GG+G+ W  +R +G  I    GK+ G+IPF+KV +   +A++QG  R+G+   
Sbjct: 148 VWLAAKGGGIGSYWGNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAAC 206

Query: 451 YLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
           YL   H ++EEF+++R+ TG D  R+  +++    + D FM+ V  +  W L SP +   
Sbjct: 207 YLPIDHPEIEEFIEMRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPAD--- 263

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                     + + ISA  LW ++LT   ETG P+I + D  N 
Sbjct: 264 ------------------------GTIQQTISARNLWIRLLTARIETGEPYIIYIDTVNR 299

Query: 570 RSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             PQ H      V +SNLC+EITL +  ++          L +       ++      I 
Sbjct: 300 LIPQHHKLANLTVKTSNLCSEITLPTGIDKDGHDRTAVCCLSSLNLEKYDEWKDDPDMIG 359

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +R LDNV+    +      K         R++GLG+MGF S L    IP  S  A   
Sbjct: 360 DVMRFLDNVLSDFINKAPDQFKDAKYSAGRERSVGLGVMGFHSFLQKNRIPLESVMAKSW 419

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             +  + I      AS +LA+ERGA                                   
Sbjct: 420 NKKIFKQIDAQVNQASKDLAEERGACP--------------------------------- 446

Query: 743 RLPWDELKKRVKTIGM--RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDF 799
                         G   R SN  AIAPTA+I+ ICG  S  ++P   N Y    +SG F
Sbjct: 447 ---------DAAEYGYQERFSNKTAIAPTASISIICGGASPGVEPIAANSYTHKTLSGSF 497

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            V N +L   L+     D+   S +  + GS+ +++ + D  K +  TAFE++  W+IE 
Sbjct: 498 NVRNRYLEEILESHGKNDDETWSTITTNQGSVSHLDFLTDLEKDVFKTAFELNQNWIIEL 557

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
           +  R  +I QAQS+NL+L  +   K+L  I+  AW  GLK+ YY RS+S    E      
Sbjct: 558 SGDRTPFISQAQSVNLFLPADVHKKELHKIHFDAWKKGLKSLYYCRSKSIQRAENINDAK 617

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
               +  V       +              EC  CQ
Sbjct: 618 STDIMANVYKNKATKTEEPE--------YEECLSCQ 645


>gi|197247241|gb|AAI65359.1| Rrm1 protein [Danio rerio]
          Length = 509

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 184/512 (35%), Positives = 282/512 (55%), Gaps = 21/512 (4%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200
             + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T
Sbjct: 10  GTMHVIKRDGRQERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDT 69

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
                + TL  K P+YA + AR  +  L +E         +K     M+ LY        
Sbjct: 70  LAAEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNS 121

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
                       ++  +   L + + Y+RDF++ + G + L   Y L ING   E PQ  
Sbjct: 122 RHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHM 181

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
            MRV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD 
Sbjct: 182 LMRVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDS 238

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+
Sbjct: 239 IEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVD 298

Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           QG  KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  
Sbjct: 299 QGGNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGD 358

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W+L  P++   L + +G+EFE  Y  YE+     E +  R + A  LW  ++    ETG 
Sbjct: 359 WSLMCPNDCPGLDECWGEEFEKLYAKYEQ-----EGRAKRVVKAQQLWYAIIESQTETGT 413

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFD 617
           P++ +KD CN +S QQ++G +  SNLCTEI   +S++E AVCNL SI L  +  +   FD
Sbjct: 414 PYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFD 473

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           + KLAS  +  V+ L+ +IDIN + ++   +S
Sbjct: 474 FQKLASVTKVIVKNLNKIIDINYYPVKDGCRS 505


>gi|294784668|ref|ZP_06749956.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_27]
 gi|294486382|gb|EFG33744.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_27]
          Length = 755

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 233/843 (27%), Positives = 385/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACEGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  +   +E ++A V  R L+ +  REV  +             +      F + I + +
Sbjct: 66  AVAMTTFEESDWAYVAGRLLMMEAEREVFHS-------------RGFSYGNFPKTIRKMI 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLSYTEEELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + +   +FYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYIIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNEP 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      D+L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++++T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQRNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|304320879|ref|YP_003854522.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula
           bermudensis HTCC2503]
 gi|303299781|gb|ADM09380.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 628

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 196/679 (28%), Positives = 305/679 (44%), Gaps = 97/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   + DRY L       E  Q  F RVA        +    A   Y+
Sbjct: 38  VDRSRDALLTDFGKTTMDDRYLLEG-----ESYQDMFARVATAYG----DDADHAQRIYD 88

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W
Sbjct: 89  YISKLWFMPATPVLSNGGASRGLPISCFLNAVDDSLDGIVGTWNENVWLASNGGGIGTYW 148

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 149 GGVRSIGESVKGH-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLE 207

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V ++  + L SP                    
Sbjct: 208 IRKASGDFNRKSLNLHHGINITDAFMEAVARDEEFGLLSPKT------------------ 249

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                     +V R ++A  LW+K+L +  +TG P++ F D  N    +        V +
Sbjct: 250 ---------GEVLRTVNARKLWQKILEIRLQTGEPYLVFADTVNRSMAKHQRDLGLKVST 300

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLC EI L++  +           L +  A   F++    + I   +R LDNV++   +
Sbjct: 301 SNLCAEIMLHTGEDHLGQERTAVCCLSSVNAEKYFEWKDEPTFIEDVMRFLDNVLEDFIN 360

Query: 642 TIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                      S    R++GLGLMGF S L  + +P+ S  A     +  + I   A +A
Sbjct: 361 RAPPEMAKAVYSARRERSVGLGLMGFHSFLQQMGVPFESAMAKSWNIKLFKHIRMGADAA 420

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV LA+ERGA                                       D  ++ +K   
Sbjct: 421 SVTLAEERGAC-------------------------------------LDAAERGIKQ-- 441

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ MAIAPTA+I+ ICG  S  I+P   N+Y    +SG FTV N  L   L+++   
Sbjct: 442 -RFSHKMAIAPTASISIICGGASPCIEPIPANVYTHKTLSGSFTVKNRALEEMLEEKGCN 500

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           D+   + +  ++GS+ +++ + D+ K +  TAFEID  W+++ A+ R  +I Q+QS+N++
Sbjct: 501 DDDTWASILENEGSVQHLDCLTDEEKAVFKTAFEIDQRWVVDLAADRAPFICQSQSVNVF 560

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  + +   L  ++  AW  G+K+ YY RS+S    + +  +G      A          
Sbjct: 561 LPGDINKWDLHMLHWTAWEKGVKSLYYCRSKSVQRTQFAGGRGAAEIDAASAAALAER-- 618

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                    T   EC  CQ
Sbjct: 619 ---------TDYDECLACQ 628


>gi|327399024|ref|YP_004339893.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hippea maritima DSM 10411]
 gi|327181653|gb|AEA33834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hippea maritima DSM 10411]
          Length = 725

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 182/644 (28%), Positives = 286/644 (44%), Gaps = 81/644 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEF 342
                  L +L  RY     +G+ IE P+    RVA  +A  +          EK   EF
Sbjct: 1   MRLSENALIVLKSRYLQKDSDGNIIETPEQLIERVAKAIAKADENYSATKEEIEKTTNEF 60

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +++S   F+ +TPTL N+G    QLS+CF+  + D +  IF A++  A++ K  GG G 
Sbjct: 61  MDVMSELKFLPNTPTLVNAGRPLGQLSACFVLPINDSMDSIFDAVKATALIHKSGGGTGF 120

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R     +  T G S G + F+KV +    A+ QGG R+GA    L   H D+ +F
Sbjct: 121 SFSRLRPKNDIVSSTMGVSSGPVSFMKVFDCATEAIKQGGVRRGANMGILRVDHPDILDF 180

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +    D      + N +  I + F+  +  +  + L +P                  
Sbjct: 181 IHCK----DKEGEFSNFNISVAITNKFLDALKNDEEYELINPR----------------- 219

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHS 581
                       +V  K+ A  +W ++     ++G P I F D  N + P  + VG + S
Sbjct: 220 ----------NKEVVGKLKASFVWDEIAKSAHKSGEPGIIFIDRINEKHPLSKEVGEIES 269

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           +N C E  L         CNLGSINL         D+D L  T+ TAV  LDNVID+N +
Sbjct: 270 TNPCGEQPLLPF----ESCNLGSINLGKFVKGKSIDWDNLKKTVFTAVHFLDNVIDVNIY 325

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            ++K +++   +R +GLG+MGF   L  L IPY S EA+++A++ M FI   +  AS EL
Sbjct: 326 PLKKIEENTKKNRKVGLGVMGFADMLIDLGIPYDSKEAIKLAEDVMCFIQKISKEASSEL 385

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A++RG + ++K S++ +   P                                   MRN+
Sbjct: 386 AKKRGNFPNYKYSIYSKENIP-----------------------------------MRNA 410

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
               IAPT +I+ I   S  I+P +   Y K  + G     V   L N LK R ++ E +
Sbjct: 411 TTTTIAPTGSISMIADASSGIEPIFALAYYKQVLDGKRLPYVYERLFNVLKDRGIYTEKL 470

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
              +  + GS+  IE IP+D++K+  TA +I     I+  +  QK+ D A S  + +   
Sbjct: 471 AERIIDNRGSLKGIEEIPEDIRKLFVTAMDITYKAHIDIQAAFQKYTDNAVSKTINMPNS 530

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            +   +   Y  A+  GLK     R  S         K  + KL
Sbjct: 531 ATVVDVKEAYNYAYKNGLKGITVYRDGSRQEQVLVVAKKEEKKL 574


>gi|34763896|ref|ZP_00144798.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886330|gb|EAA23603.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 755

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 232/843 (27%), Positives = 384/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACEGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  +   +E +++ V  R L+ +  REV  +             +      F + I +  
Sbjct: 66  AVAMTTFEESDWSYVAGRLLMMEAEREVFHS-------------RGFSYGNFPKTIRKMT 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLSYTEEELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + +   +FYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEENGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      D+L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TVGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYNTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|307295358|ref|ZP_07575197.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306878861|gb|EFN10080.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 645

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 197/678 (29%), Positives = 292/678 (43%), Gaps = 97/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              RD      G   L DRY L       E  Q  F      +A    +    A   Y+ 
Sbjct: 56  DDSRDALLTDFGKDTLQDRYLL-----PGESYQDLF----ARVAAAYADDADHAQRVYDY 106

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   FM +TP L N GT      SC+L +V D L GI     EN  LA   GG+G  W 
Sbjct: 107 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 166

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VRG+G  +   NGK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL++
Sbjct: 167 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 225

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    + D FM  V     + L SP +                   
Sbjct: 226 RKTSGDFNRKALNLHHGVLLTDEFMAAVRDGKEFALRSPKDQ------------------ 267

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   ++A AL++K++ +   TG P+I F D  N   P+ H      V +S
Sbjct: 268 ---------SVRGSVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTS 318

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638
           NLC+EITL +  +           L +       ++      +   +R LDNV    ID 
Sbjct: 319 NLCSEITLPTGRDHIGNDRTAVCCLSSLNLETWDEWKDDKQFVEDVMRFLDNVLQDYIDR 378

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               + +AK S    R++GLG+MGF S L    +P+    A        + IS  A  AS
Sbjct: 379 APPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHISEKAAEAS 438

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           ++LA ERG                 D+  +    R                         
Sbjct: 439 MQLAVERGPCP--------------DAADMGVMER------------------------- 459

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
             S  MAIAPTA+I+ ICG  S  I+P   N+Y    +SG F + N +L   L  +    
Sbjct: 460 -FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFAIKNPYLEKLLVAKAKDS 518

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
            A+ + +    GS+ +++ +  + K    T+FEID  WL+E A+ R  +IDQAQSLNL++
Sbjct: 519 TAVWNSILEKGGSVQHLDFLSQEEKDTFKTSFEIDQRWLLELAADRTPYIDQAQSLNLFI 578

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++ +AW +G+K+ YYLRS+S                 A  V   N+   
Sbjct: 579 PADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRA-----------GFAGGVEADNTIDA 627

Query: 937 SLGIPSSCTSDTECEVCQ 954
                   T   EC  CQ
Sbjct: 628 PKFEIGETTDYDECLACQ 645


>gi|157964543|ref|YP_001499367.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           massiliae MTU5]
 gi|157844319|gb|ABV84820.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           massiliae MTU5]
          Length = 617

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/680 (29%), Positives = 298/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +    +      G  IL DRY +       E  Q  F RV+   A      ++ A + Y 
Sbjct: 23  INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 73

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 74  YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 133

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 134 GNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 192

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    I D FMK V  N  + L SP                   
Sbjct: 193 IRRPTGGDVNRKALNIHHGIAITDKFMKAVENNTDFDLVSPAT----------------- 235

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H      V 
Sbjct: 236 ----------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 285

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +       ++      I + +  LDNV++   
Sbjct: 286 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFI 345

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +           S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  
Sbjct: 346 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADK 405

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+E+ +E+GA                D++   +  R                       
Sbjct: 406 ASIEIGKEKGACP--------------DALDAGSNER----------------------- 428

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++  
Sbjct: 429 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 485

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN+
Sbjct: 486 NNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 545

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +      +   +   +
Sbjct: 546 FLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKADFKDLEEQNDKLA 605

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                      +  EC  CQ
Sbjct: 606 EVG--------NYEECLACQ 617


>gi|237742882|ref|ZP_04573363.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 4_1_13]
 gi|229430530|gb|EEO40742.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 4_1_13]
          Length = 755

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 237/843 (28%), Positives = 386/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + ++   +E ++A V  R L+ +  REV  +                    F + I + V
Sbjct: 66  AVSMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + K   EFYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVNDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNEA 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---SNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      D+L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEMFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLI 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                          +S +   EC
Sbjct: 722 TAWKEGCKSVYYIRT-----IQKNT--------------------------NSISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|27882097|gb|AAH44356.1| Rrm1 protein [Danio rerio]
          Length = 498

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/510 (36%), Positives = 282/510 (55%), Gaps = 21/510 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNSRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ + G + L   Y L ING   E PQ   M
Sbjct: 113 SPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ +FL+L+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P++   L + +G+EFE  Y  YE+     E +  R + A  LW  ++    ETG P+
Sbjct: 350 LMCPNDCPGLDECWGEEFEKLYAKYEQ-----EGRAKRVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S++E AVCNL SI L  +  +   FD+ 
Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQ 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           KLAS  +  V+ L+ +IDIN + ++   +S
Sbjct: 465 KLASVTKVIVKNLNKIIDINYYPVKDGCRS 494


>gi|19703450|ref|NP_603012.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713528|gb|AAL94311.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 755

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 235/843 (27%), Positives = 385/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + T+   +E ++A V  R L+ +  REV  +                    F + I +  
Sbjct: 66  AVTMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMT 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +A  +   RD  ++Y G  +L +RY +  +G   E+PQ  F
Sbjct: 113 ELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMLVNRYLIKYDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + +   EFYN LS      +TP L N       LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      ++L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASTLLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E+   V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|295698299|ref|YP_003602954.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Riesia pediculicola USDA]
 gi|291157020|gb|ADD79465.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Riesia pediculicola USDA]
          Length = 764

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/790 (23%), Positives = 316/790 (40%), Gaps = 73/790 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +   +G L   + K+++ ++  +  GLQ +S   +   +    Y+ +    +   +I +S
Sbjct: 7   VTKRNGDLEKIDLKKIKRLITLSADGLQGISISKIQDLSCIQFYNKIQTKLIHQIIIKTS 66

Query: 207 RTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             LI  K P+Y  ++AR  +  LR++                      ++    +  G  
Sbjct: 67  ADLISTKIPDYQYLSARLAISYLRKDAYGEFNPPKL-----------YQHVKNMVSIGKY 115

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
              L E     +   +   + + RD  F Y  ++ L  +Y +     G   E  Q  ++ 
Sbjct: 116 DYRLLEDYSVEEFQKMDQFINHLRDMNFCYAAVKQLEGKYLVKDRVTGKIYESAQFLYIL 175

Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           V+  L     +  +      FY+ +S+F     TP +    T   Q SSC L    D L 
Sbjct: 176 VSACLFSIYPKDVRLIYVKRFYDAISTFKISLPTPIMAGIRTPTRQFSSCVLIECDDSLD 235

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I               G+G +   +R +G+ I        G IPF K       + +QG
Sbjct: 236 SINATASSIVKYVSQRAGIGINAGRIRAIGSPIRQGEAFHTGCIPFYKYFQAAVKSCSQG 295

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   +   WH++VE  L L+ N G +  R   ++ A  I  L  +R+ +    TL
Sbjct: 296 GIRGGAATIFYPIWHLEVESLLVLKNNRGVESNRVRHLDYAVQINKLMYERLIRGEEITL 355

Query: 502 FSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           FSP +V DL+  +     +FE  Y+ YE   +  +    +++ AV L+ KM+     TG 
Sbjct: 356 FSPSDVPDLYSCFFSDQDKFENLYKKYELDQNIRK----KRVKAVDLFSKMMQERSSTGR 411

Query: 559 PWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFANN 614
            +I   D CN  SP       +  SNLC E+ L +          G I L          
Sbjct: 412 TYIQNVDHCNTHSPFDSKIAPIRQSNLCLEVLLPTHPLYNINDQEGEIALCTLSAFNLGE 471

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
               ++L       VR LD ++D   + I  AKKS+ + R +G+G++ +   L   H+ Y
Sbjct: 472 IRSLEELEDLSDLIVRALDALLDYQDYPILAAKKSSISRRTLGIGVINYAYYLAKNHVKY 531

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           +   A  +  ++ E I ++ + AS +LA+E+GA S F  + + +G+ PID+     +   
Sbjct: 532 SDSSANNLTHKTFEAIQYYLLKASNQLAKEKGACSWFHHTNYSKGILPIDNY----KKSL 587

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +   +      W  L++R+K  G+RNS   A+ P+ T + I   +  I+P    + +K +
Sbjct: 588 DHLTSEPLHYDWKSLRERIKKYGLRNSTLSAVMPSETSSQISNATNGIEPPRGFMSIKVS 647

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G    +                                    D LKK +   +E+   
Sbjct: 648 KDGILRQIVPEY--------------------------------DRLKKKYELLWEMPNN 675

Query: 855 -WLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY--LR 904
              ++     QK++DQ+ S N          ++     L      A+  G+KT YY   R
Sbjct: 676 IGYLQLVGIIQKFVDQSISANTNYDPSKFDRNQIPMNHLLKDLLLAYKYGIKTLYYHNTR 735

Query: 905 SRSATSVEKS 914
             S    EKS
Sbjct: 736 DGSDKIQEKS 745


>gi|254418479|ref|ZP_05032203.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           sp. BAL3]
 gi|196184656|gb|EDX79632.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           sp. BAL3]
          Length = 629

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 197/679 (29%), Positives = 299/679 (44%), Gaps = 94/679 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G + L DRY L       E  Q  F RV+   +    +    A   Y+
Sbjct: 36  VDRSRDALLTDFGKKTLEDRYLL-----AGESYQDMFARVSTAFS----DDADHAQRLYD 86

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL  V D L GI     EN  LA   GG+G  W
Sbjct: 87  YMSRLWFMPATPVLSNGGADRGLPISCFLNAVGDSLDGIQSVWNENVALASNGGGIGTYW 146

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  GK+ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 147 GGVRSIGEKVKG-AGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 205

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    + D FM+ V   A + L SP +                  
Sbjct: 206 IRKPSGDFNRKSLNLHHGVNVTDEFMEAVKTGATFDLKSPKD------------------ 247

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V + + A +LW K+L +  +TG P++ F D  N +           V  
Sbjct: 248 ---------GAVIKTVDARSLWTKLLDIRMQTGEPYMIFSDTVNRQMAPHQRDLGLKVKQ 298

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLC EI L++  +   V       L +  A    ++ +    I   +R LDNV++    
Sbjct: 299 SNLCAEIMLHTGRDHLGVDRTAVCCLSSVNAETFLEWREEPRFIEDIMRFLDNVLEDFIR 358

Query: 642 TIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                 K    S    R++GLGLMGF S L    + + S  A        + +   A  A
Sbjct: 359 RAPPEMKAAVYSAKRERSVGLGLMGFHSFLQGQGVAFESAMAKSWNMRLFKHLRREADKA 418

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  LA+E+G                     L AE R  +                     
Sbjct: 419 SRLLAEEKGPC-------------------LDAEERGVME-------------------- 439

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L ++ + 
Sbjct: 440 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLDEKGIN 498

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            EA+ + +  H+GS+ +++ + +D K I+ TAFE+D  W++E A+ R   I QAQSLNL+
Sbjct: 499 TEAVWNSILEHEGSVQHLDALNEDEKGIYKTAFELDQRWVVELAADRAPEICQAQSLNLF 558

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +  + +   L  ++  AW  G+K+ YYLRS+S             G  +        +  
Sbjct: 559 IPGDVNKWDLHMLHWSAWERGVKSLYYLRSKSVQRA------AFAGAEDKAEAVIDPNQP 612

Query: 936 HSLGIPSSCTSDTECEVCQ 954
               +P   T   EC  CQ
Sbjct: 613 DLFSMPK--TDYDECLACQ 629


>gi|119872039|ref|YP_930046.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum islandicum DSM 4184]
 gi|119673447|gb|ABL87703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum islandicum DSM 4184]
          Length = 844

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 194/872 (22%), Positives = 350/872 (40%), Gaps = 103/872 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G L  F+ ++L + + +A S +       V  E   N+   ++  +L   +   
Sbjct: 3   TVVKLSGLLEPFSLEKLRLSIRQAASEVG----VEVDGEVEININRDVNSWELADLVQLE 58

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                   P  A+V    LL ++ +EV    + K +          Y +           
Sbjct: 59  LLKRAIDRPELAEVAKSHLLGRIYKEVFGKDFLKHKSGYLERALARYRQ----------- 107

Query: 266 ARLLHESMMDFDLVYLANDLKY--ERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFF 321
             L    ++  + + L    +   + D +  Y  L++  +  Y L     R+ E P    
Sbjct: 108 --LAEAGLLKEESLRLLEAFEPRPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAA 165

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            RVA  +A       + A  +Y+ ++S   + ++P  FN+ T+    +SCF   V D L 
Sbjct: 166 WRVATAVA----RDVETARRYYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLS 221

Query: 382 G--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
                    I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+K+ + 
Sbjct: 222 SLSHPGRFCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDT 281

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR- 492
               + QGGKR+GA    L  WH DV +F+  +     D     + N + ++ D FM++ 
Sbjct: 282 NVEVIKQGGKRRGAQMGTLHVWHPDVRKFIKAKTGELKDA-HLQNFNISVFVDDAFMEKA 340

Query: 493 --VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             + ++  + L +P     L     K  E    +  ++A  G       + A  L+R++ 
Sbjct: 341 LGLDKDPKYPLVNPR--IYLERTGRKPVEETRVSPPQEAVAG------WVDARELFREIA 392

Query: 551 TMLFETGHPWITFKDPCNIRSPQ----------QHVGVVHSSNLCTEITLNSSSEETAVC 600
              +++G P + +KD  N  +P           +   +  + N C+E   N       VC
Sbjct: 393 EGAWDSGDPGVIYKDNLNASNPLLGEEIEVAGHRFRYIWRAVNPCSETHQNPF----EVC 448

Query: 601 NLGSINLLAHFANN----------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           NL  INL+                  D++ LA   R   R LD+ ID +   IE   + N
Sbjct: 449 NLTHINLVKFARECAGKTFEEKLACIDWEGLAEAARLGTRFLDDAIDRSYTGIEVIDEMN 508

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+  S ELA+ERG +  
Sbjct: 509 RATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMAWIYVNALDESAELARERGPFKF 568

Query: 711 FKGSLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI----------- 756
           F+ S + +G  P             R + A     R   D L++                
Sbjct: 569 FEKSAYARGEIPVLKFQDYVWGRWERVKGAFPPELREAGDRLREITMRTREWLRPRLEAL 628

Query: 757 ------GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                 G+RNS  ++IAPT   + + G +  ++P +   ++++   G         V  L
Sbjct: 629 REKVKGGVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFIRNVTVGTLIEYYWPAVEWL 688

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + R LW   +   ++   G + +   +P+++K + ATA EI  +W +   +  Q+W+DQ 
Sbjct: 689 RARGLWTPQVRKTVEET-GMLKDAP-LPEEVKHLFATAMEIGWLWHVLMQASAQQWVDQG 746

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTLKGVD 920
            S  + +      + + + +  AW +G+K     R +S +            K  L    
Sbjct: 747 ISKTINMPANAPKEDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLADTK 806

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950
             +  + +              +     D  C
Sbjct: 807 IIVKPIALDSAIEEVAEKAKLKALEEGKDPYC 838


>gi|296329017|ref|ZP_06871524.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153910|gb|EFG94721.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 755

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 234/843 (27%), Positives = 385/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + T+   +E ++A V  R L+ +  REV  +                    F + I +  
Sbjct: 66  AVTMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMT 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +A  +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + +   EFYN LS      +TP L N       LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      ++L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------EELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+   +N   +  W+E+   V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDINSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|260497962|ref|ZP_05816078.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_33]
 gi|260196470|gb|EEW94001.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_33]
          Length = 755

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 233/843 (27%), Positives = 383/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + ++   +E +++ V  R L+ +  REV  +                    F + I + V
Sbjct: 66  AVSMTTFEESDWSYVAGRLLMMEAEREVFHSRGFSYGD-------------FPKTIRKMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLSYTEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKHDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + +   EFYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL    E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDSYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      ++L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDALM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|67459101|ref|YP_246725.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           felis URRWXCal2]
 gi|67004634|gb|AAY61560.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia felis
           URRWXCal2]
          Length = 607

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/680 (29%), Positives = 298/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +    +      G  IL DRY +       E  Q  F RV+   A      ++ A + Y 
Sbjct: 13  INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 64  YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 124 GNVRSINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    I D FMK V  N  + L SP                   
Sbjct: 183 IRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLISPAT----------------- 225

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H      V 
Sbjct: 226 ----------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 275

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +       ++      I + +  LDNV++   
Sbjct: 276 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFI 335

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +           S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  
Sbjct: 336 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADK 395

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+E+ +E+GA                D++   +  R                       
Sbjct: 396 ASIEIGKEKGACP--------------DALDAGSNER----------------------- 418

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++  
Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 475

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN+
Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 535

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +      +   +   +
Sbjct: 536 FLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKADFKDLEKQNDKLA 595

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                      +  EC  CQ
Sbjct: 596 EAG--------NYEECLACQ 607


>gi|237743585|ref|ZP_04574066.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 7_1]
 gi|229432616|gb|EEO42828.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 7_1]
          Length = 755

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 233/843 (27%), Positives = 383/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + ++   +E +++ V  R L+ +  REV  +                    F + I +  
Sbjct: 66  AVSMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMT 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLSYTEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKYDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + +   EFYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITEMDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGVELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      ++L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSIYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|239947954|ref|ZP_04699707.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922230|gb|EER22254.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 616

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/680 (29%), Positives = 295/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +    +      G  IL DRY +       E  Q  F RV+   A      ++ A + Y 
Sbjct: 22  INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 72

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 73  YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 132

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+ 
Sbjct: 133 GNVRSINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIG 191

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    I D FMK V  N  + L SP                   
Sbjct: 192 IRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLISPAT----------------- 234

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H      V 
Sbjct: 235 ----------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 284

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +       ++      I + +  LDNV++   
Sbjct: 285 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFI 344

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +           S    R++GLG+MGF S L +  +P  S        +  E+IS  A  
Sbjct: 345 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADK 404

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+E+ +E+G                 D++   +  R                       
Sbjct: 405 ASIEIGKEKGVCP--------------DALDAGSNER----------------------- 427

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++  
Sbjct: 428 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 484

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN+
Sbjct: 485 NNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 544

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L    S K L+ I+ +AW  G+K+ YY RS S    +K +          VP  D    
Sbjct: 545 FLPGNISKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHD--------VPKADFKDL 596

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                  +   +  EC  CQ
Sbjct: 597 EKQNDKLAEAGNYEECLACQ 616


>gi|330004286|ref|ZP_08304844.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|328536658|gb|EGF62980.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 775

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 195/826 (23%), Positives = 315/826 (38%), Gaps = 74/826 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++I+  +G+  + + ++   +V  A  G+  VS+  V      ++ DG++ S +  ALI
Sbjct: 1   MIRIIKRNGSAEALSEEKYNRVVMWATDGVDGVSASAVAMGAAASIVDGMTTSQVHDALI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI  + PNY++V AR  + K+R++              +E    Y E+  + +  
Sbjct: 61  KAAADLISADSPNYSQVAARLSIFKIRKDAHG----------QYEYPDFY-EHILKNVTR 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    +       ++  L   +K ERD  F Y     L  +Y     +NG   E PQ  
Sbjct: 110 GVYDSEIMHKYSCEEIDELGAYMKPERDDNFGYAATTQLRGKYLVQHRVNGEIYESPQHI 169

Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           +M V M L            + +    FY++ S+F     TP +    T   Q SSC L 
Sbjct: 170 YMLVGMCLYQDWNNGDMGKTRLEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I               G+G ++  +R LG+ I        GVIPFLK+    
Sbjct: 230 ESGDSLKSINATTSAIVEYISQRAGIGVNFGSIRALGSPIRNGEATHTGVIPFLKLFQAA 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA  AY   WH++    L L+ N G D  R   M+    +  L  +R+ 
Sbjct: 290 VKSCSQGGVRGGAATAYYPLWHLEANSLLVLKNNRGVDSNRVRHMDYGVELNRLMYRRLI 349

Query: 495 QNAGWTLFSPDEVS---DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           +    TLFSP +V    +       EFE  Y  YE      +      + AV L+  ++ 
Sbjct: 350 EGGAITLFSPHDVPGLLNAFYADQDEFERLYVQYENDPSIRK----ESVPAVDLFSSLMQ 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609
               TG  +I   D  N           +  SNLC EI L +          G I L   
Sbjct: 406 ERASTGRIYIANIDHMNTHGAFDEAVAPIKQSNLCAEIALPTKPLAFTDDPNGEIALCTL 465

Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                        L      AV  LD ++D   + +  A+      R++G+G+  F   L
Sbjct: 466 SAFNLGALESLADLEEVAFYAVSALDCLLDYQDYPMFAAETPAKARRSLGIGVTNFAYWL 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+  +  ++  E+ E + F+ + AS  LA ++GA   F  + + +G+ PID   
Sbjct: 526 AKNGAKYSGVDGNKLVHETFEAVQFYLLKASNLLASDKGACEWFGQTKYAKGLLPIDHY- 584

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                  EL  N    L WD L+K ++  G+RNS   A  P  T + I   +  I+P   
Sbjct: 585 RKQLDASELNANHPLLLDWDGLRKDIERYGLRNSTLSAQMPCETSSQITNSTNGIEPPRG 644

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VKS+  G   +V                  + D++ + G +  +             
Sbjct: 645 PVSVKSSKDGVVKMVVPEFSRIGDAY-----EYLWDIEDNFGYLTKV------------- 686

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTT 900
                        +  QK+IDQ+ S N   D           +K+      A+ MG+KT 
Sbjct: 687 -------------AIMQKFIDQSISANTNYDPARFASGRVPMQKMLTDLLDAYRMGVKTL 733

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           YY  +R        + +       A   +             +C  
Sbjct: 734 YYHNTRDGAG----SREDDKITHQAHLPSSTEFIEEEDECGGACKI 775


>gi|66391515|ref|YP_239040.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43]
 gi|62288603|gb|AAX78586.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43]
          Length = 751

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 194/788 (24%), Positives = 315/788 (39%), Gaps = 73/788 (9%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
               ++   G    F  ++L  ++  A  G +++     L      + DG++   ++   
Sbjct: 3   EIKTVIKSSGVSQPFEKEKLFKVLNWASVG-KNIDVNAFLESVVDLLRDGMTTKQIQGVA 61

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +   I  KEP++  V A   +  LR+ V       P           + E+  + ++
Sbjct: 62  IKYAADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVD 110

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + +       D+ Y   ++K+++DF F Y G+Q L  +Y      NG   E PQ 
Sbjct: 111 AGKYDKEILTKWTKADIEYFEENIKHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQY 170

Query: 320 FFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM +AM L   E          V+FYN +S       TP +    T   Q SSC +   
Sbjct: 171 AFMLIAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIES 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  +               G+G +   +R +G+ I G      GVIPF K       
Sbjct: 231 GDSLGSLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++VE  L L+ N G +  R   ++    + DL  KR+  N
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEVENLLVLKNNKGVENNRIRHLDYGVQLNDLMYKRLINN 350

Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              TLFSPD  +D      +     EFE  Y + E+     +    ++I A  L++ ++ 
Sbjct: 351 DYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPTVRK----KRIKAADLFQLLVQ 406

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              +TG  +I      N +        V  SNLC EI + +S  +      G I L    
Sbjct: 407 ERAQTGRKYIFNSHHVNQQGSF--SVPVRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLM 464

Query: 612 AN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           A   +  D  +  +  R AVR LDN++D   + +  A K     R++G+G+  + S L  
Sbjct: 465 AIVLDNADVSEFPALTRIAVRALDNLLDYQNYPVAAALK-AKQRRSLGVGITNYASWLAS 523

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            +  Y S        E ME   ++ + AS+ELA+ERGA   F  + + QG+ PID     
Sbjct: 524 NYCDY-SEAYAGNVHELMEAFQYNLLVASMELAKERGACGLFHETKYAQGLLPIDWYCKT 582

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  +K  G+RNS   A+ P  + + +   +  I+P    +
Sbjct: 583 VDELAL----PVYNCDWEWLRGEIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 638

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            VKS+  G F   N  + N+  Q D +D       + + G + ++               
Sbjct: 639 SVKSSKEGSF---NQVVPNQNDQIDFYDYLWTMAKRGNKGYLSHV--------------- 680

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY 902
                      +  QK++DQA S N   D  +          +      A   G+KT YY
Sbjct: 681 -----------AVMQKFVDQAISANTNYDPANFPDGKVKSETIIDDLLYANYYGVKTLYY 729

Query: 903 LRSRSATS 910
             +R    
Sbjct: 730 HNTRDGAG 737


>gi|157827264|ref|YP_001496328.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii OSU 85-389]
 gi|157802568|gb|ABV79291.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii OSU 85-389]
          Length = 607

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/686 (29%), Positives = 301/686 (43%), Gaps = 95/686 (13%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L  ++    +      G  IL DRY +       E  Q  F RV+   A  +      
Sbjct: 7   NKLQININNNYNDLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAENKE----H 57

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA   G
Sbjct: 58  AQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETGDSLDDIVNLWTENVWLASRGG 117

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+ W  VR +   IH   G S G+IPF+KV +   +A++QG  R+G+   YL   H +
Sbjct: 118 GIGSYWGNVRSINEAIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPE 176

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           +EEF+D+R+ TG D  R++ +++    I D FM+ V  N  + L SP             
Sbjct: 177 IEEFIDIRRPTGGDVNRKSLNIHHGIAITDKFMQAVENNTDFELISPAT----------- 225

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                            KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  
Sbjct: 226 ----------------KKVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKK 269

Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               V  SNLC+EITL +  +           L +       ++      I T +  LDN
Sbjct: 270 LGLHVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIPTIMLFLDN 329

Query: 635 VIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V++   +           S    R++GLG+MGF S L +  +P  S  A     +  E++
Sbjct: 330 VLEDFINKAPDTMARAKYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYV 389

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S     ASV++ +E+GA                D++   +  R                 
Sbjct: 390 SKEVEEASVKIGKEKGACP--------------DALDAGSNER----------------- 418

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                     SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   
Sbjct: 419 ---------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERL 469

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE A+ R  +I Q
Sbjct: 470 LEEKGFNNDQVWSSISTHEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQ 529

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           AQSLN++L    S K L+ I+ +AW  G+K+ YY RS S    +K +   + G    +  
Sbjct: 530 AQSLNVFLPGNVSKKYLNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKGDFKDLEK 589

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +   +  +           EC  CQ
Sbjct: 590 QNDKLAEANK--------YEECLACQ 607


>gi|294661478|ref|YP_003579931.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15]
 gi|292660639|gb|ADE34887.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15]
          Length = 750

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 189/794 (23%), Positives = 326/794 (41%), Gaps = 72/794 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++   G    F+ +++  +++ AC G  ++  +  L    + + DG++   ++   I  +
Sbjct: 7   VVKSSGVRQPFDKEKIYKVLKWACDG-HNIDVRAFLENVLELIRDGMTTKQIQRIAIKYA 65

Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I  KEP++  V +   +  LR++V       P           + ++  + +E G  
Sbjct: 66  ADHISVKEPDWQYVASNLEMFALRKDVYGQFDPIP-----------FYDHIVKMVEAGKY 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMR 323
            + + E     D+      + +++DF F Y G Q L  +Y       G   E PQ  FM 
Sbjct: 115 DKEILEKYSKQDIQVFERAIDHDKDFEFSYAGSQQLIGKYLVQDRDTGEIFETPQYAFML 174

Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM L  +ET   +    V+FYN +S       TP +    T   Q SSC +    D L 
Sbjct: 175 IAMCLHQEETGLAQVTHIVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIESGDSLG 234

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +               G+G +   +R +G+ I G      GVIPF K       + +QG
Sbjct: 235 SLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVKSCSQG 294

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++VE  L L+ N G +  R   ++    +  L  KR+      TL
Sbjct: 295 GVRGGAATLYYPFWHLEVENLLVLKNNKGVEENRVRHLDYGVQLNQLMYKRLMNRDYITL 354

Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           FSPD  +D      ++     FE  YE+ E+     +    ++I AV L++ +     +T
Sbjct: 355 FSPDVANDRLYDLFYEADQTAFEELYESLEKDPTVRK----KRIKAVDLFQLLAQERAQT 410

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--N 614
           G  +I      N +        V  SNLC EI + +S  +      G I L    A   +
Sbjct: 411 GRKYIFNTHHVNQQGSF--TVPVRMSNLCCEIAIPTSPLDDDDKMAGEIGLCTLMAIVLD 468

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D  +     R AVR LDN++D   + ++ A K     R++G+G+  + S L   +  Y
Sbjct: 469 NADISEFPKLTRIAVRALDNLLDYQNYPVKAALK-AKQRRSLGVGITNYASWLASNYCDY 527

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S    +   E ME   F+ + AS+ELA+ERGA   +  + + +G+ PID      +   
Sbjct: 528 -SEAYTDKVHELMEAFQFNLLVASMELAKERGACGLYNDTKYARGLLPIDWYCKTVDE-- 584

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +       W+ L+ ++K  G+RNS   A+ P  + + +   +  I+P    + +KS+
Sbjct: 585 --LVAPVYNCDWEWLRSQIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGLVSIKSS 642

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G +   N  + N+  Q D +D       + + G + ++                    
Sbjct: 643 KEGHY---NQVVPNQNNQIDFYDLLWDMAKRGNKGYLSHV-------------------- 679

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-------KKLDFIYRQAWLMGLKTTYYLRSRS 907
                 +  QK++DQ+ S N   D  +        + +      A   G+KT YY  +R 
Sbjct: 680 ------AVMQKFVDQSISANTNYDPANYEDGKVKTEDIIDDLLYANYYGVKTLYYHNTRD 733

Query: 908 ATSVEKSTLKGVDG 921
               E+   +   G
Sbjct: 734 GAGDEEEAAEDCAG 747


>gi|148264309|ref|YP_001231015.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter
           uraniireducens Rf4]
 gi|146397809|gb|ABQ26442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
          Length = 742

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 179/662 (27%), Positives = 298/662 (45%), Gaps = 83/662 (12%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345
                L +L  RY      G  +E P   F RVA  +A+     +++A       +FY +
Sbjct: 12  LSKNALTVLEKRYLKRDKEGKVLETPVDMFRRVAESIAVANARFDQKADLAALADKFYAM 71

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++F F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 72  MTAFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFEAVKYTALIHKSGGGTGFSFS 131

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F++V +     + QGG R+GA    L   H D+ +F+  
Sbjct: 132 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMC 191

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+R+ ++ N +  I + FMK V  +  + + +P        L            
Sbjct: 192 KA----DQRQLNNFNISVGITEAFMKAVDADTDYNIVNPRSGEKAGIL------------ 235

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                          +A  ++ +++   +E G P I F D  N  +P  H+G + S+N C
Sbjct: 236 ---------------NARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 280

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     N + ++++L   I+ AV  LDNVI++N + +E+
Sbjct: 281 GEQPLLPY----ESCNLGSINLGKMVQNGEVNWERLKEVIQLAVNFLDNVIEVNNYPLEQ 336

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                 ++R IGLG+MG+   L LL IPY S +A+E+ ++ M+FI+    +ASVELA+ R
Sbjct: 337 IDTMTRSNRKIGLGVMGWADMLILLGIPYNSMKAIELGEKVMKFINDEGHAASVELAKTR 396

Query: 706 GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G + +FKGS++   G  P                                   +RN+   
Sbjct: 397 GTFPNFKGSVFDAPGKGP-----------------------------------IRNATVT 421

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   +V+  M  +    VN       K +  + E ++  
Sbjct: 422 TIAPTGTISIIANASSGVEPLFAVSFVRQVMDKNILLEVNPIFEEIAKAQGFYSEELMKK 481

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
           +  H G++ +I  IP+ ++ I  TA +I P   I   +  QK+ D A S  +      + 
Sbjct: 482 IAEH-GTVHDIPEIPEAVRNIFVTAHDITPEVHIAMQAAFQKYTDNAVSKTVNFPNSATF 540

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           + ++ +YR A+    K     R  S      ST K  +     V  T     +H    P 
Sbjct: 541 EDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSTGKKEETP--QVHPTGEEKRSHKRERPK 598

Query: 943 SC 944
           + 
Sbjct: 599 AL 600


>gi|257453170|ref|ZP_05618469.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           3_1_5R]
 gi|257467365|ref|ZP_05631676.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918495|ref|ZP_07914735.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|317059705|ref|ZP_07924190.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 3_1_5R]
 gi|313685381|gb|EFS22216.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 3_1_5R]
 gi|313692370|gb|EFS29205.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 752

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 227/836 (27%), Positives = 377/836 (45%), Gaps = 120/836 (14%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  DG +   N +++   +  AC+GL +V+   + S+      + ++   ++ +LI S
Sbjct: 7   KVINRDGIIEDLNIEKIREKLVRACAGL-EVNMVELESKIESIYEENITTKKIQESLINS 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + ++   +E ++A+V  R L+ +  REV  +      +           +     +  G+
Sbjct: 66  AVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGELE---------KTISLMLSYGL 116

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
               L       ++  L   +  ERD  ++Y G  +   RY L  +G   E+PQ  FM +
Sbjct: 117 YDARLS-KYTKEEIYELNQAIVPERDMVYDYAGASMFVHRYLLKYSGKIHELPQEVFMII 175

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AM L++ E +K K A E Y  LS      +TP L N    +  LSSCF+T + D++  IF
Sbjct: 176 AMLLSIYEKDKVKVAKEIYEGLSLRKISLATPILANLRIPNGNLSSCFITAIDDNIESIF 235

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAVNQ G+R
Sbjct: 236 YNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAVNQQGRR 295

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GAV   +++WH+D+E FL+L+   GD R + +D+     + +LFM+RV   A WTL  P
Sbjct: 296 AGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGADWTLVDP 355

Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
            E+  ++     +LYG EFE  YE  ER+    +I++ + + A  L+++++    ETG P
Sbjct: 356 YEIRQIYGVELCELYGVEFEEVYERIERE---NKIQLKKIMKARDLFKEIMKSQLETGMP 412

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVC 600
           +I FKD  N R+   H+G++ + NLC E   N S                     E   C
Sbjct: 413 YIFFKDRANERNHNSHLGMIGNGNLCMESFSNFSPSKNFQEKIVGNVAIHEKEMGEVHTC 472

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NL           ++L      AVR LDN ID+    + ++ K N  +R IG+G 
Sbjct: 473 NLLSLNLAEIME------EELEKYTSLAVRALDNTIDLTVTPLAESNKHNEKYRTIGVGA 526

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    L          E+ E   +  E I+ +A+ AS  LA++RG Y +F GS W QG+
Sbjct: 527 MGLADYLA--REYMIYEESEEEISQVFERIAAYALKASAFLARDRGQYPAFVGSKWSQGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F   +     +      +       W E+   V   G+RN    AIAP  + + + G + 
Sbjct: 585 FFGKTQDWYEKHSKYSDV-------WKEVFYLVDQYGLRNGELTAIAPNTSTSLLMGATA 637

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P++   +++ N SG    V  +    LK R  +     +                  
Sbjct: 638 SVVPTFSRFFIEKNQSGATPRVVKY----LKDRAWFYPEFKN------------------ 675

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGL 897
                     +DP   ++  S+  +W  Q  S+ L  D       K +      AW  G 
Sbjct: 676 ----------VDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLLTAWETGC 725

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           K+ YY+R+     ++K+T                          +      ECE C
Sbjct: 726 KSVYYVRT-----IQKNT--------------------------NIMNEKEECESC 750


>gi|91205548|ref|YP_537903.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           bellii RML369-C]
 gi|91069092|gb|ABE04814.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia bellii
           RML369-C]
          Length = 607

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 199/686 (29%), Positives = 301/686 (43%), Gaps = 95/686 (13%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L  ++    +      G  IL DRY +       E  Q  F RV+   A  +      
Sbjct: 7   NKLQININNNYNDLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAENKE----H 57

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
           A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  LA   G
Sbjct: 58  AQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLASRGG 117

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+ W  VR +   IH   G S G+IPF+KV +   +A++QG  R+G+   YL   H +
Sbjct: 118 GIGSYWGNVRSINEAIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPE 176

Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           +EEF+D+R+ TG D  R++ +++    I D FM+ V  N  + L SP             
Sbjct: 177 IEEFIDIRRPTGGDVNRKSLNIHHGIAITDKFMQAVENNTDFELISPAT----------- 225

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                            KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H  
Sbjct: 226 ----------------KKVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKK 269

Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               V  SNLC+EITL +  +           L +       ++      I T +  LDN
Sbjct: 270 LGLHVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIPTIMLFLDN 329

Query: 635 VIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           V++   +           S    R++GLG+MGF S L +  +P  S  A     +  E++
Sbjct: 330 VLEDFINKAPDTMARAKYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYV 389

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           S     ASV++ +E+GA                D++   +  R                 
Sbjct: 390 SKEVEEASVKIGKEKGACP--------------DALDAGSNER----------------- 418

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                     SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   
Sbjct: 419 ---------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERL 469

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE A+ R  +I Q
Sbjct: 470 LEEKGFNNDQVWSSISTHEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQ 529

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           AQSLN++L    S K L+ I+ +AW  G+K+ YY RS S    +K +   + G    +  
Sbjct: 530 AQSLNVFLPGNVSKKYLNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKGDFKDLEK 589

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +   +  +           EC  CQ
Sbjct: 590 QNDKLAEANK--------YEECLACQ 607


>gi|256027985|ref|ZP_05441819.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           D11]
 gi|289765930|ref|ZP_06525308.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D11]
 gi|289717485|gb|EFD81497.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D11]
          Length = 755

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 233/843 (27%), Positives = 386/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + ++   +E +++ V  R L+ +  REV  +             +    + F + I + V
Sbjct: 66  AVSMTTFEESDWSYVAGRLLMMEAEREVYHS-------------RGFSYDNFPKTIRKMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  +      + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDKRLLSYTEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKHDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   + +   EFYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      ++L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLTELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   DE  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKVMAKIGSWVTQGVSMEMVFDLN-KDIKAKNIYDALM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|238650261|ref|YP_002916113.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           peacockii str. Rustic]
 gi|238624359|gb|ACR47065.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           peacockii str. Rustic]
          Length = 607

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 200/692 (28%), Positives = 299/692 (43%), Gaps = 95/692 (13%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           M  F        +    +      G  IL DRY +       E  Q  F RV+   A   
Sbjct: 1   MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  
Sbjct: 55  ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           LA   GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL
Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170

Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP       
Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPAT----- 225

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                  KV  K+ A  LW K+LT   ETG P++ F D  N   
Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263

Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           P+ H      V  SNLC+EITL +  +           L +       ++      I + 
Sbjct: 264 PEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323

Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  LDNV++   +           S    R++GLG+MGF S L +  +P  S  A     
Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E+IS     AS+E+ +E+GA                D++   +  R           
Sbjct: 384 KIFEYISAETDKASIEIGKEKGACP--------------DALDAGSNER----------- 418

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
                           SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N
Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R
Sbjct: 464 KHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN++L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +   
Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVLKAD 583

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +   +   +           +  EC  CQ
Sbjct: 584 FKDLEEQNDKLAEAG--------NYEECLACQ 607


>gi|31322340|gb|AAP15463.1| ribonucleotide reductase large subunit [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 607

 Score =  403 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/692 (29%), Positives = 301/692 (43%), Gaps = 95/692 (13%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           M  F        +    +      G  IL DRY +       E  Q  F RV+   A   
Sbjct: 1   MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  
Sbjct: 55  ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           LA   GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL
Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170

Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP       
Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVKNNTDFDLVSPAT----- 225

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                  KV  K+ A  LW K+LT   ETG P++ F D  N   
Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263

Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           P+ H      V  SNLC+EITL +  +           L +       ++      I + 
Sbjct: 264 PKHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323

Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  LDNV++   +           S    R++GLG+MGF S L +  +P  S  A     
Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E+IS     AS+E+ +E+G                 D++   +  R           
Sbjct: 384 KIFEYISAETDKASIEIGKEKGVCP--------------DALDAGSNER----------- 418

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
                           SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N
Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGPFNVRN 463

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R
Sbjct: 464 KHLERLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN++L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +  K
Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVL--K 581

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            N   + + N      G      +  EC  CQ
Sbjct: 582 ANFKDLGEQNDKLAEAG------NYEECLACQ 607


>gi|27375118|ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|27348254|dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score =  403 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 197/679 (29%), Positives = 289/679 (42%), Gaps = 100/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L   RD      G   L DRY L   G      Q  F RV+   A    +    A   Y+
Sbjct: 136 LDRSRDDLLTSFGRLTLTDRYLLAGEGL-----QDMFARVSCAFA----DNVAHAQRLYD 186

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL +V D L GI G   EN  LA   GG+G  W
Sbjct: 187 AMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIGTYW 246

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G       G + G+IPF+ V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 247 GNVRSIGEKAR--GGVTSGIIPFIHVTDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 304

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    + D FM  V     + L SP                    
Sbjct: 305 IRKASGDFNRKSLNLHHGINVTDEFMCAVGAGTAFALRSPKTNE---------------- 348

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V R+I A  LW+++L    +TG P++ F D  N   P+        V +
Sbjct: 349 -----------VVREIDARQLWQRILENRLQTGEPYLLFIDTVNRALPKHQRELGLEVST 397

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EITL++  +           L +        +++    I   +R LDNV    I 
Sbjct: 398 SNLCSEITLSTGIDHRGEERTAVCCLSSLNLETWDQWNEEPGFIEDVMRFLDNVLTHFIT 457

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    +++A+ +    R++GLG+MGF S L    IP     A          +   A +A
Sbjct: 458 VAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMEGTLAKSFNLNMFRKLRREADAA 517

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV LA+ERG                                        D L++ V    
Sbjct: 518 SVALARERGPCP-------------------------------------DALERGVMA-- 538

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S   +P   N+Y    +SG  +V N  L   L  +   
Sbjct: 539 -RFSHKIAIAPTASISIICGGTSACTEPIPANIYTHKTLSGAISVRNPHLAKVLAAKGAD 597

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             A    +  HDGS+ +++ + +  K I  TAFEID  W++E A+ R   I Q+QS+NLY
Sbjct: 598 TSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELAADRAALICQSQSINLY 657

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  G+K+ YY RS+S +               A        +T
Sbjct: 658 LPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRA-------------AFAGKIAGDAT 704

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +       T   EC  CQ
Sbjct: 705 PTQQPARQRTDYEECLACQ 723


>gi|157828521|ref|YP_001494763.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933239|ref|YP_001650028.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. Iowa]
 gi|157801002|gb|ABV76255.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908326|gb|ABY72622.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           rickettsii str. Iowa]
          Length = 607

 Score =  403 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/692 (29%), Positives = 301/692 (43%), Gaps = 95/692 (13%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           M  F        +    +      G  IL DRY +       E  Q  F RV+   A   
Sbjct: 1   MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  
Sbjct: 55  ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           LA   GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL
Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170

Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP       
Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVKNNTDFDLVSPAT----- 225

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                  KV  K+ A  LW K+LT   ETG P++ F D  N   
Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263

Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           P+ H      V  SNLC+EITL +  +           L +       ++      I + 
Sbjct: 264 PKHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323

Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  LDNV++   +           S    R++GLG+MGF S L +  +P  S  A     
Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E+IS     AS+E+ +E+G                 D++   +  R           
Sbjct: 384 KIFEYISAETDKASIEIGKEKGVCP--------------DALDAGSNER----------- 418

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
                           SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N
Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R
Sbjct: 464 KHLERLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN++L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +  K
Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVL--K 581

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            N   + + N      G      +  EC  CQ
Sbjct: 582 ANFKDLEEQNDKLAEAG------NYEECLACQ 607


>gi|262067227|ref|ZP_06026839.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379060|gb|EFE86578.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 755

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 235/843 (27%), Positives = 389/843 (46%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + T+   +E +++ V  R L+ +  REV            +H  +  Y + F + I+  V
Sbjct: 66  AVTMTSFEESDWSYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLTYTEEELNQISQLIDLNRDMVYDYAGANMLVNRYLIKHDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   +     EFYN LS      +TP L N    +  LSSCF+T + D
Sbjct: 173 MTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTLF P E+   +     +LYG EFE  YE  E+     +IK+ R +SA  L++ ++   
Sbjct: 353 WTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL S+NL    +      D+L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISLNLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLMYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +G+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TVGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQ +F         + R+    N   +  W+E    V+  G+RN    AIAP  + + 
Sbjct: 582 KWDQAIFFG-------KKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W  Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWTTQGVSMEMVFDLN-KDIKAKDIYDTLI 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T                             +   EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|304373618|ref|YP_003858363.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16]
 gi|299829574|gb|ADJ55367.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16]
          Length = 750

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 197/790 (24%), Positives = 318/790 (40%), Gaps = 73/790 (9%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
               ++   G   +F  ++L  ++  A +G +++     L      + DG++   ++   
Sbjct: 3   DIKTVVKSSGVSQTFEKEKLFKVLNWASAG-KNIDVNAFLENVVDLLRDGMTTKQIQAVA 61

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +   I  KEP++  V A   +  LR+ V       P           + E+  + +E
Sbjct: 62  IKYAADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVE 110

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + +       D+ Y   ++ +++DF F Y G+Q L  +Y      NG   E PQ 
Sbjct: 111 AGKYDKEILTKWTKSDIEYFEENINHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQY 170

Query: 320 FFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            FM +AM L   E          V+FYN +S       TP +    T   Q SSC +   
Sbjct: 171 AFMLIAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIES 230

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  +               G+G +   +R +G+ I G      GVIPF K       
Sbjct: 231 GDSLGSLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVK 290

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R GA   Y   WH++VE  L L+ N G +  R   ++    + DL  KR+  N
Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEVENLLVLKNNRGVEENRIRHLDYGVQLNDLMYKRLINN 350

Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              TLFSPD  +D      +     EFE  Y + E+     +    ++I AV L++ ++ 
Sbjct: 351 DYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPAVRK----KRIKAVDLFQLLVQ 406

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              +TG  +I      N +        +  SNLC EI + +S  +      G I L    
Sbjct: 407 ERAQTGRKYIFNSHHVNQQGSF--SVPIRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLM 464

Query: 612 AN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           A   +  D  +  +  R AVR LDN++D   + +  A K     R++G+G+  + S L  
Sbjct: 465 AIVLDNADISEFPALTRIAVRALDNLLDYQNYPVAAALK-AKQRRSLGVGITNYASWLAS 523

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            +  Y S        E ME   F+ + AS+ELAQERGA   F  + + QG+ PID     
Sbjct: 524 NYCDY-SEAYAGNVHELMEAFQFNLLVASMELAQERGACGLFHETKYAQGLLPIDWYCKN 582

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +              W+ L+  +K  G+RNS   A+ P  + + +   +  I+P    +
Sbjct: 583 VDELAS----PVYNCDWEWLRGEIKKHGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 638

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            VKS+  G F   N  + N+  Q D +D       + + G + ++               
Sbjct: 639 SVKSSKEGSF---NQVVPNQNNQIDFYDYLWTMAKRGNKGYLAHV--------------- 680

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY 902
                      +  QK++DQA S N   D  +          +      A   G+KT YY
Sbjct: 681 -----------AVMQKFVDQAISANTNYDPANFPDGKVKSEIILEDLLYANYFGIKTLYY 729

Query: 903 LRSRSATSVE 912
             +R     E
Sbjct: 730 HNTRDGAGEE 739


>gi|288931372|ref|YP_003435432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ferroglobus placidus DSM 10642]
 gi|288893620|gb|ADC65157.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ferroglobus placidus DSM 10642]
          Length = 756

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 169/628 (26%), Positives = 280/628 (44%), Gaps = 81/628 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNL 345
                    +L  RY L  + G+ IE P+    RVA  +A  E     + +  A +F+ +
Sbjct: 1   MELSKTAEVVLKKRYLLKDDKGNVIETPEQMLWRVANAIAEAEEKYGNDPDYWAKKFFEI 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +    FM ++PTL N+GT   QLS+CF+  V D + GIF AL + A + K  GG G  ++
Sbjct: 61  MDRQEFMPNSPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  T G + G + F+K+ +     + QGG+R+GA    L   H D+EEF+  
Sbjct: 121 RIRPKGDIVKSTKGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLSVHHPDIEEFITA 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     +     + N +  + D FM+ +  +  + L +P                     
Sbjct: 181 KW----EEGVLRNFNISVAVTDKFMEALKNDEDYELINPRT------------------- 217

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V +K+SA  ++  ++   +  G P + F D  N  +P  HVG++ ++N C
Sbjct: 218 --------GEVVKKVSARKIFNLIVEGAWRNGEPGLIFIDEINRHNPTPHVGMIEATNPC 269

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTI 643
            E  L         CNLGSINL       + D  +++L   +  A R LDNVID+N + I
Sbjct: 270 GEQPLLPY----ESCNLGSINLSKFVNEKEGDFEWERLREVVHIATRFLDNVIDVNSYPI 325

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +K    +R IGLG+MG+  AL  L IPY S EAV +A++ M+FI   +  AS  LA+
Sbjct: 326 PEIEKMTKGNRKIGLGVMGWADALFKLKIPYDSEEAVALAEKVMKFIQEESHKASQMLAE 385

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERG + ++KGS+W                +  + M   +                     
Sbjct: 386 ERGVFPNWKGSVW---------------EKRGIKMRNATTTTIAPTGTI----------- 419

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMI 821
                    + I G S  I+P +   Y ++N+    +F  +N      LK+  L+ E +I
Sbjct: 420 ---------SIIAGCSSGIEPVFALAYKRTNILDGEEFFEINPIFERTLKEIGLYREDII 470

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
             +   +GSI  I  IP+ ++++   A +I   W +   +  QK+ D A S  + L    
Sbjct: 471 ERVAE-EGSIQRIGEIPEAVRRVFKCALDIPAEWHVRMQAAFQKYTDNAVSKTINLPNHA 529

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +   ++  +  A+ +  K     R  S 
Sbjct: 530 TKADVEKAFLLAYELKCKGITVYRDGSR 557


>gi|237738721|ref|ZP_04569202.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 2_1_31]
 gi|229423824|gb|EEO38871.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. 2_1_31]
          Length = 755

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 237/843 (28%), Positives = 389/843 (46%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + T+   +E ++A V  R L+ +  REV            +H  +  Y + F + I+  V
Sbjct: 66  AVTMTSFEESDWAYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLTYTEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   +     EFYN LS      +TP L N    +  LSSCF+T + D
Sbjct: 173 MAISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTLF P E+   +     +LYG EFE  YE  E+     +IK+ R +SA  L++ ++   
Sbjct: 353 WTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL S+NL    +      D+L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISLNLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLMYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQ +F         + R+    N   +  W+E    V+  G+RN    AIAP  + + 
Sbjct: 582 KWDQAIFFG-------KKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W  Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWTTQGVSMEMVFDLN-KDIKAKDIYDTLM 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW  G K+ YY+R+     ++K+T    +                            EC
Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNNISEK--------------------------EEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|289805311|ref|ZP_06535940.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 664

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/676 (25%), Positives = 281/676 (41%), Gaps = 31/676 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRV--AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V   +        +      FY+ +S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGD 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+     
Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP    V  V  SNLC EI L +          G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                  D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +
Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 +N      W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +
Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644

Query: 792 KSNMSGDFTVVNSFLV 807
           K++  G    V     
Sbjct: 645 KASKDGILRQVVPDYE 660


>gi|52788093|ref|YP_093921.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pestis]
 gi|145597235|ref|YP_001154699.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|229896975|ref|ZP_04512134.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia pestis Pestoides A]
 gi|52538022|emb|CAG27447.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Yersinia pestis]
 gi|145213003|gb|ABP42408.1| ribonucleoside-diphosphate reductase class Ia alpha subunit
           [Yersinia pestis Pestoides F]
 gi|229700011|gb|EEO88051.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Yersinia pestis Pestoides A]
          Length = 771

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/835 (24%), Positives = 326/835 (39%), Gaps = 91/835 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+
Sbjct: 1   MISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALV 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY +V AR  L K+R++                    +  +    +  
Sbjct: 61  KSAADLISPETPNYLQVAARLNLFKIRKDAFGQYDYPN-----------FYNHIVSNVSR 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    L +     ++  L   +K +RD  F Y     L  +Y     + G+  E PQ  
Sbjct: 110 GVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQL 169

Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           +M V M L            + +    FY++ S+F     TP +    T   Q SSC L 
Sbjct: 170 YMLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L GI  A            G+G  +  +R LG+ I        GVIPFLK     
Sbjct: 230 EAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTA 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  L  +R+ 
Sbjct: 290 VKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLV 349

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            N   TLFSP +V  L+D +     +FE  Y  YE      E    + I AV L+  ++ 
Sbjct: 350 HNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIRKKSIPAVDLFSTLMQ 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609
               TG  +I   D  N           VH SNLC EITL +          G I L   
Sbjct: 406 ERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNGEIALCTL 465

Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      D L      AV  LD+++D   + +  A+      R++G+G+  F   L
Sbjct: 466 SAFNLGAIRTLDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNFAYYL 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + + QG  P+D   
Sbjct: 526 AKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLPVDHYR 585

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       +   ++PW+EL+ R++  G+RNS   A  P  T + I   +  I+P   
Sbjct: 586 KTLDT--NPETSFELKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VKS+  G   +V                                      LK  +  
Sbjct: 644 PVSVKSSKDGIVKMVVPDFAQ--------------------------------LKDQYEY 671

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899
            +++ D    +   +  QK+ DQA S N          D+    KL      A+  G+KT
Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDLLFAYQQGVKT 731

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
            YY           +T  G   + +   V++P+++            + EC+  C
Sbjct: 732 LYY----------HNTRDGAGKRDDDDQVSEPSAAEVVEP-------EDECDGAC 769


>gi|15892570|ref|NP_360284.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           conorii str. Malish 7]
 gi|15619734|gb|AAL03185.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           conorii str. Malish 7]
          Length = 607

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 200/692 (28%), Positives = 299/692 (43%), Gaps = 95/692 (13%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           M  F        +    +      G  IL DRY +       E  Q  F RV+   A   
Sbjct: 1   MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  
Sbjct: 55  ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           LA   GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL
Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170

Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP       
Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPAT----- 225

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                  KV  K+ A  LW K+LT   ETG P++ F D  N   
Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263

Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           P+ H      V  SNLC+EITL +  +           L +       ++      I + 
Sbjct: 264 PEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323

Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  LDNV++   +           S    R++GLG+MGF S L +  +P  S  A     
Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E+IS     AS+E+ +E+GA                D++   +  R           
Sbjct: 384 KIFEYISAETDKASIEIGKEKGACP--------------DALDAGSNER----------- 418

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
                           SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N
Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R
Sbjct: 464 KHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN++L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +   
Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKISHDVLKAD 583

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +   +   +           +  EC  CQ
Sbjct: 584 FKDLEEQNDKLAE--------TGNYEECLACQ 607


>gi|289523461|ref|ZP_06440315.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503153|gb|EFD24317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 740

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 185/650 (28%), Positives = 292/650 (44%), Gaps = 85/650 (13%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFYNL 345
           F     ++L  RY L    G+ IE P+    RVA  +         E  +E+ A +FY +
Sbjct: 11  FSENATKVLERRYLLKDEKGNLIETPEDMLWRVASAIAKAEKAFGDEESEEEWANKFYEM 70

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++S  F+ ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG G +++
Sbjct: 71  MASLDFLPNSPTLMNAGTPTAQLSACFVLPVGDSMDEIFDALKYTALVHKSGGGTGFNFS 130

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  T G + G + F+++ + T   V QGG R+GA    L   H DV +F+  
Sbjct: 131 SLRPYGDIVKSTKGVASGPVSFMELFDHTTDVVKQGGMRRGANMGILNADHPDVIKFVKA 190

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     +  +  + N +      FMK V  +  W L +P                     
Sbjct: 191 KI----EEGKLKNFNISVGTTQKFMKAVLNDEEWELVNPRT------------------- 227

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V  K+ A  L+  +  M ++TG P I F D     +   ++G + ++N C
Sbjct: 228 --------GEVVDKVGARNLFDLLCEMAWKTGDPGIIFLDKIEASNLTPNLGSITATNPC 279

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            E  L         CNLGSINL        + D+ KL  T+R AVR LD+VI++N   I+
Sbjct: 280 GEQPLLPF----ESCNLGSINLSNMVLPKGEIDWSKLERTVRIAVRFLDDVIEVNQFPIK 335

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +      + R IGLG+MG+   L  L IPY S EA+ +A + M FI+      S  LA+ 
Sbjct: 336 EIADMTMSTRKIGLGVMGWADVLLKLRIPYDSDEALNLARKVMSFIAKIGHEESARLAET 395

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG + ++KGS W              E +  L                     MRN+   
Sbjct: 396 RGPFPAWKGSRW--------------EEKGML---------------------MRNATVT 420

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQRDLWDEAMIS 822
            IAPT TI+ +  VS  ++P +   Y +    G+   T VN  L++ L++  L+ EA+I 
Sbjct: 421 TIAPTGTISLVAEVSSGVEPVFALAYRRKAFEGEANLTYVNEILLDALREERLYSEALIE 480

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +    GS+  ++ +PD LKK+  TA +I P W +   +  Q++ D A S  + +  E S
Sbjct: 481 LILER-GSLKELD-LPDSLKKVFVTAHDISPEWHVRMQAAFQEYTDNAVSKTINMPHEAS 538

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDGKLNAVPVT 929
              +   Y  A+ +G K     R R          T +    ++   P  
Sbjct: 539 VDDVKKAYLLAYELGCKGITIFRDRCKEDQVLYIGTGEVPSSEVKEEPKG 588


>gi|302381297|ref|YP_003817120.1| ribonucleoside-diphosphate reductase, subunit alpha [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191925|gb|ADK99496.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 631

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 194/679 (28%), Positives = 298/679 (43%), Gaps = 94/679 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L   RD      G + L DRY L       E  Q  F RV+   A    +    A   Y+
Sbjct: 38  LDRTRDDLLTDFGKKTLEDRYLL-----AGESYQDMFARVSTAYA----DDADHAQRVYD 88

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM STP L N G       SCFL +V D L GI     EN  LA   GG+G  W
Sbjct: 89  YMSKLWFMPSTPVLSNGGANRGLPISCFLNSVQDSLDGIQRVWNENVSLASNGGGIGTYW 148

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 149 GGVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVHHPEIEEFLE 207

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V   + + L SP + +                
Sbjct: 208 IRKPSGDFNRKSLNLHHGINITDEFMEAVKAGSDFALLSPKDQA---------------- 251

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V R++ A +LW+K+L +  +TG P++ F D  N + P+        V  
Sbjct: 252 -----------VIRRVDARSLWQKILEIRLQTGEPYLIFSDTVNRQMPRHQRELGLKVKQ 300

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLC+EI L++  +   +       L +  A    ++ +    +   +R LDNV++    
Sbjct: 301 SNLCSEIMLHTGPDHLGIDRTAVCCLSSVNAEMFLEWREEPRFVEDVMRFLDNVLEDFIT 360

Query: 642 TIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                      S    R++GLGLMGF S L    + + S  A        + +   A  A
Sbjct: 361 RAPPEMAAAVYSAKRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADKA 420

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV+LA+E+G                                        D  ++ V    
Sbjct: 421 SVKLAEEKGPCE-------------------------------------DAAERGVME-- 441

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L      
Sbjct: 442 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLDGYGAN 500

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +A+ S +  H+GS+ ++  + DD K I  TAFE+D  W++E ++ R   I QAQS+NL+
Sbjct: 501 TDAVWSSILEHEGSVQHLTMLNDDEKGIFKTAFELDQRWVVELSADRSPEICQAQSINLF 560

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           +  + +   L  ++  AW  G+K+ YYLRS+S                            
Sbjct: 561 IPGDVNKWDLHMLHWSAWERGVKSLYYLRSKSVQRA--------AFAGAEDKAEVEPDPN 612

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                 ++ T   EC  CQ
Sbjct: 613 QPDLFSAAPTDYDECLACQ 631


>gi|148284014|ref|YP_001248104.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia
           tsutsugamushi str. Boryong]
 gi|146739453|emb|CAM79092.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi str. Boryong]
          Length = 605

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 201/685 (29%), Positives = 302/685 (44%), Gaps = 95/685 (13%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
                +  ER+          L DRY L       E  Q   +R+A   A    + +  A
Sbjct: 6   KFNIKINNERNKLLSTSSQATLADRYLLKG-----ETFQDLCVRIASYYA----DNKSHA 56

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              Y+ +S   F+ +TP L N GT      SCF+  V D L+GI     EN  LA   GG
Sbjct: 57  QRLYDYMSQHWFLPATPILSNGGTNRGLAISCFVNEVEDSLHGIVNTWIENVWLASRGGG 116

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+ W  VR +   I   NG S G+IPF+KV +   +A++QG  R+G+   YL   H ++
Sbjct: 117 IGSYWGNVRSINEKIGE-NGYSSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPVSHPEI 175

Query: 460 EEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           EEF+D+R++TG D  R++ +++    I D FM  V +N  W L SP +            
Sbjct: 176 EEFIDIRRHTGGDSNRKSLNIHHGIVISDQFMHAVEKNESWNLISPYDN----------- 224

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
                           ++   + A  LW K+LT   ETG P+I F D  N   P+ H   
Sbjct: 225 ----------------RIINTVKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKL 268

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
              V +SNLC+EITL +  + T         L +        +      I   ++ LDNV
Sbjct: 269 GLKVKTSNLCSEITLPTGRDYTNNIRTAVCCLSSLNLEYFELWQSNEHFIPDIIKFLDNV 328

Query: 636 IDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++   +           S    R+IGLG+MGF S L   +IP AS  A     +  E I 
Sbjct: 329 LEDFINKAPNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIK 388

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               + SV LA+ERGA               ID+     + R                  
Sbjct: 389 LQTDNMSVVLAKERGAC--------------IDAQKCNIQER------------------ 416

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                    S   AIAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L
Sbjct: 417 --------FSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLL 468

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + + L ++ + S +  H+GS+ ++  + D  K+++ TA+EID  WLIE A+ R ++I Q+
Sbjct: 469 ESKGLNNDQVWSSIATHEGSVQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQS 528

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLN++L    S + L  I+  AW   +K+ YY RS S    EK +        + V   
Sbjct: 529 QSLNIFLPGNCSKQLLHDIHFDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTTI 580

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
           D  +        ++  +D EC  CQ
Sbjct: 581 DELAKLTDKEQLATSNNDDECLACQ 605


>gi|157803770|ref|YP_001492319.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           canadensis str. McKiel]
 gi|157785033|gb|ABV73534.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia
           canadensis str. McKiel]
          Length = 607

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 198/680 (29%), Positives = 298/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +    +      G  IL DRY +       E  Q  F RV+   A      ++ A + Y 
Sbjct: 13  INNSHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 64  YMSKMWFMPATPILSNGGTDRGLPISCFLNETNDSLDDIVNLWTENVWLASRGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   IH   G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 124 GNVRSINEEIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+  G D  R++ +++    I D FM  V  N  + L SP                   
Sbjct: 183 IRRPIGGDVNRKSLNIHHGIAITDEFMNAVENNTDFNLVSPAT----------------- 225

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H      V 
Sbjct: 226 ----------KKVTNKVRARDLWIKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 275

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +       ++    + I + +  LDNV++   
Sbjct: 276 MSNLCSEITLPTGIDHLGNSRTAVCCLSSLNLEYFEEWKDDKAFIHSIMLFLDNVLEDFI 335

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +           S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  
Sbjct: 336 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADK 395

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+E+ +E+GA                D++   +  R                       
Sbjct: 396 ASIEIGKEKGACP--------------DALDAGSNER----------------------- 418

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++  
Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 475

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  H+GS+ ++  +  + K++  TA+EID  WLIE AS R  +I QAQSLN+
Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSAEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 535

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +      +   +   +
Sbjct: 536 FLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKADFKDLEKQNNKIA 595

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                      +  EC  CQ
Sbjct: 596 EAG--------NYEECLACQ 607


>gi|315497332|ref|YP_004086136.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           excentricus CB 48]
 gi|315415344|gb|ADU11985.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis
           excentricus CB 48]
          Length = 625

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 201/678 (29%), Positives = 293/678 (43%), Gaps = 100/678 (14%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
              +D      G + L DRY L       E  Q  F RVA   A    +  + A   YN 
Sbjct: 39  DPSKDDKLTEFGKKTLDDRYLL-----AGETYQDMFARVATAYA----DDSEHAQRIYNY 89

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S+  FM +TP L N G +     SCFL  VPD L GI     EN  LA   GG+G  W 
Sbjct: 90  ISNLWFMPATPVLSNGGAKRGLPISCFLNAVPDSLEGIVSVWNENVALASNGGGIGTYWG 149

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   Y++ +H ++EEFL++
Sbjct: 150 GVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYIDIFHPEIEEFLEI 208

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           RK +GD  R+  +++    I D FM+ V   A + L SP                     
Sbjct: 209 RKPSGDFNRKALNLHHGISITDEFMEAVRDGAQFGLRSPKNNE----------------- 251

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     + R + A ALW+K+L +  +TG P++ F D  N             V  S
Sbjct: 252 ----------IIRYVDARALWQKILEIRMQTGEPYLIFADTVNRSMAPHQRELGLKVKQS 301

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           NLC EI L++  +           L +  A    ++      I   +R LDNV++    +
Sbjct: 302 NLCAEIMLHTGKDHLGHERTAVCCLSSVNAETFLEWRDEPRFIEDIMRFLDNVLEDFIQS 361

Query: 643 IEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              A      S    R++GLGLMGF S L    + + S  A        + +   A  AS
Sbjct: 362 APDAMSAAIYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADKAS 421

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           V+LAQERG                     L AE R  +                      
Sbjct: 422 VKLAQERGPC-------------------LDAEERGVME--------------------- 441

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N FL   L ++ +  
Sbjct: 442 RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPFLRALLAEKGIDT 501

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                 +  H+GS+ +I+ + +D K I  TAFEID  W++E A+ R   I Q+QSLN++L
Sbjct: 502 PETWDSIVEHEGSVQHIDALSEDEKAIFKTAFEIDQRWVVELAADRAPEICQSQSLNIFL 561

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +     L  ++  AW  G+K+ YYLRS+S                          +  
Sbjct: 562 PGDVDKWDLHMLHWTAWEQGVKSLYYLRSKSVQRA--------------AFAGSEGKAAA 607

Query: 937 SLGIPSSCTSDTECEVCQ 954
                S  T   EC  CQ
Sbjct: 608 VSMAASGKTDYEECLACQ 625


>gi|312262464|gb|ADQ52759.1| NrdA ribonucleotide reductase A subunit [Aeromonas phage PX29]
          Length = 744

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 193/798 (24%), Positives = 321/798 (40%), Gaps = 84/798 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   SF+ ++L  I+  A +G   +    ++S    ++ +G+S  D++   I 
Sbjct: 1   MLVRKSSGITESFDKQKLYRIITFATTG-TRIDPIEIMSGIMSSITNGMSTKDIQKLAIK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  E P+Y  V AR  +  LR++          K    E+           +++G
Sbjct: 60  FAADRISIEQPDYQYVAARLQMYALRKQAYNQFDPPHLKRHTLEL-----------VQDG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           +    L     D +   L N + +ERDF   Y G+    ++Y       G   E PQ  +
Sbjct: 109 IYDPDLATKWTDEEFSELNNYIIHERDFNLAYAGVMQFKEKYLAKDRSTGELYETPQMLY 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M VAM L   E  ++  +   FY++ S       TP L    T   Q SSC      D+L
Sbjct: 169 MLVAMCLHQDEKTDRLAKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIESGDEL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  G+IPF K       + +Q
Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE+ L L+ N G +  R   ++    I  +F +R+  +   T
Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKMFWERLKNDDYIT 348

Query: 501 LFSPD----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSPD    E+ DL      +F+  YE  E +    +    ++I A  ++         T
Sbjct: 349 LFSPDVQNGELYDLFYKDPVKFKELYEMLEEEPFVRK----KRIKASEIFNLFAQERTGT 404

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------ETAVCNLGSINLLAH 610
           G  +  F D  N  +P  +   +  SNLC EI L +         E A+C L + NL A 
Sbjct: 405 GRIYPMFIDNVNSATP--YKEPIRQSNLCIEIALPTYPVKRDGSGEIALCTLAAYNLGAI 462

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +     Y+   +  R AVR LDN++D   + + +A  +    RA+G+G+  F   L   
Sbjct: 463 ES-----YEDFLNVARAAVRALDNLLDYQDYPVVQAL-AAKKRRALGIGVTNFAYFLAKN 516

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+S  A ++   +ME + F  + AS+ELA+ERGA      + W  G+ PID      
Sbjct: 517 FVDYSSGNANKLVHRTMEMMQFANLVASMELAKERGANEWHHKTKWADGLLPIDWYNKNV 576

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +    ++ W+ L+  +K  G+RN    A  P  + + I   +  I+P    + 
Sbjct: 577 DNI----VPNDLKMDWEWLRAEIKKYGLRNDTLSAFMPCESSSQITNSTNGIEPPRALMS 632

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K +  G F  +   +                                D L   + TA++
Sbjct: 633 TKQSKDGVFNQLVPEV--------------------------------DMLGSEYETAWK 660

Query: 851 ID---PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTT 900
           +        ++  +  QK++DQ  S N Y D           K +     +A   G+K+ 
Sbjct: 661 MTKRGMKGYLDIVAIMQKFVDQMISANTYYDPAVYPGEKIPMKIVLKDMSRAQKHGVKSM 720

Query: 901 YYLRSRSATSVEKSTLKG 918
           YY  +R      + T   
Sbjct: 721 YYSNTRDGADGTEDTSSE 738


>gi|222056106|ref|YP_002538468.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. FRC-32]
 gi|221565395|gb|ACM21367.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. FRC-32]
          Length = 742

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/659 (26%), Positives = 295/659 (44%), Gaps = 81/659 (12%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345
                + +L  RY     +G  +E P   F RVA  +A  +   +K+A       +F+ +
Sbjct: 12  LSKNAVTVLEKRYLKRDKDGKVLESPVDMFRRVAESIAAADARFDKKADIAALADKFFAM 71

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++SF F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 72  MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKHTALIHKSGGGTGFSFS 131

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F++V +     + QGG R+GA    L   H D+ +F+  
Sbjct: 132 RLRPANDMVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMC 191

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+R+ ++ N +  + + FMK V  +  + L +P                     
Sbjct: 192 KA----DQRQLNNFNISVGLTEEFMKAVDADREYNLINPRS------------------- 228

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +    ++A  ++ +++   +E G P I F D  N  +P  H+G + S+N C
Sbjct: 229 --------GEKAGSLNARKVFNRIVKQAWENGEPGIIFIDRLNKDNPTPHIGQIESTNPC 280

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     + + ++ +L   I  AV  LDNVI++N + +E+
Sbjct: 281 GEQPLLPY----ESCNLGSINLGKMVEHGEINWQRLKEVILLAVNFLDNVIEVNNYPLEQ 336

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                  +R IGLG+MG+   L LL IPY S EA+E+ ++ M+FI+    +ASV+LA+ R
Sbjct: 337 IDAMTRANRKIGLGVMGWADLLILLGIPYNSKEAIELGEKIMKFINDEGHAASVQLAKVR 396

Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G + +FKGS++D  G+ P                                   +RN+   
Sbjct: 397 GPFPNFKGSIFDKPGMEP-----------------------------------IRNATVT 421

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   +++  M  +    VN       K+   + E ++  
Sbjct: 422 TIAPTGTISIIANASSGVEPLFAVSFIRQVMDKNILLEVNPIFEETAKKEGFYSEELMQK 481

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
           +  H G++ +I  IP+ ++ +  TA +I P   I   +  QK  D A S  +      + 
Sbjct: 482 IAEH-GTVHDIPEIPEQIRNVFVTAHDITPEVHISMQAAFQKHTDNAVSKTVNFPNSATI 540

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           ++++ +YR A+    K     R  S      ST K  +         +  S        
Sbjct: 541 EEVEKVYRLAYETNCKGVTIYRDGSRDEQVLSTGKKDEAPKTLPVADEKRSHKRERPKA 599


>gi|45478634|ref|NP_995490.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|45357287|gb|AAS58681.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Yersinia pestis biovar Microtus str. 91001]
          Length = 771

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/835 (24%), Positives = 325/835 (38%), Gaps = 91/835 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  +G+    + ++   +V      +++VS+  V      +++DG++   L  AL+
Sbjct: 1   MISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALV 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI  E PNY +V AR  L K+R++                    +  +    +  
Sbjct: 61  KSAADLISPETPNYLQVAARLNLFKIRKDAFGQYDYPN-----------FYNHIVSNVSR 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           GV    L +     ++  L   +K +RD  F Y     L  +Y     + G+  E PQ  
Sbjct: 110 GVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQL 169

Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           +M V M L            + +    FY++ S+F     TP +    T   Q SSC L 
Sbjct: 170 YMLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L GI  A            G+G  +  +R LG+ I        GVIPFLK     
Sbjct: 230 EAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTA 289

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             + +QGG R GA  A+   WH++VE  L L+ N G +  R   ++    I  L  +R+ 
Sbjct: 290 VKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLV 349

Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            N   TLFSP +V  L+D +     +FE  Y  YE      E    + I AV L+  ++ 
Sbjct: 350 HNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIRKKSIPAVDLFSTLMQ 405

Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609
               TG  +I   D  N           VH SNLC EITL +          G I L   
Sbjct: 406 ERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNGEIALCTL 465

Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      D L      AV  LD+++D   + +  A+      R++G+G+  F   L
Sbjct: 466 SAFNLGAIRTLDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNFAYYL 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 Y+     ++  E+ E I ++ + AS  LA+ +GA   F  + + QG  P+D   
Sbjct: 526 AKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLPVDHYR 585

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              +       +   ++PW+EL+ R++  G+RNS   A  P  T + I   +  I+P   
Sbjct: 586 KTLDT--NPETSFELKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + VKS+  G   +V                                      LK  +  
Sbjct: 644 PVSVKSSKDGIVKMVVPDFAQ--------------------------------LKDQYEY 671

Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899
            +++ D    +   +  QK+ DQA S N   D            KL      A+  G+KT
Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPTRFLAIRFPMMKLLEDLLFAYQQGVKT 731

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953
            YY           +T  G   + +   V++P+++            + EC+  C
Sbjct: 732 LYY----------HNTRDGAGKRDDDDQVSEPSAAEVVEP-------EDECDGAC 769


>gi|256846216|ref|ZP_05551674.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|256719775|gb|EEU33330.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 3_1_36A2]
          Length = 755

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 235/843 (27%), Positives = 384/843 (45%), Gaps = 131/843 (15%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + ++   +E ++A V  R L+ +  REV  +                    F + I + V
Sbjct: 66  AVSMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  +   +   RD  ++Y G  +  +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M L L E E   + K   EFYN LS      +TP L N    H  LSSCF+T + D
Sbjct: 173 MAISMMLVLNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVNDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNEA 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P E+   +     +LYG EFE  YE  E       IK+ + +SA  L++ ++   
Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---SNIKLKKVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEKEDGNTSIRKSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL SINL    +      D+L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            WDQG+F         + R+    N   +  W+E    V+T G+RN    AIAP  + + 
Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + G + S+ P++   +++ N  G            LK R  +     +            
Sbjct: 635 LMGATASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890
                           ++P+  ++  ++   W+ Q  S+    +L   +   K +     
Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLI 721

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            AW    K+ YY+R+     ++K+T                          +S +   EC
Sbjct: 722 TAWEESCKSVYYIRT-----IQKNT--------------------------NSISDKEEC 750

Query: 951 EVC 953
           E C
Sbjct: 751 ESC 753


>gi|295691247|ref|YP_003594940.1| ribonucleoside-diphosphate reductase subunit alpha [Caulobacter
           segnis ATCC 21756]
 gi|295433150|gb|ADG12322.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           segnis ATCC 21756]
          Length = 625

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 199/679 (29%), Positives = 296/679 (43%), Gaps = 98/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY L       E  Q  F RVA   A    +    A   Y+
Sbjct: 36  VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVATAFA----DDADHAQRVYD 86

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W
Sbjct: 87  YMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYW 146

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 147 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 205

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM  V     + L SP                    
Sbjct: 206 IRKPSGDFNRKSLNLHHGINITDEFMHAVRDGHKFGLRSPKTNE---------------- 249

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V R++ A ALW+K+L +  +TG P++ F D  N   P         V  
Sbjct: 250 -----------VLREVDARALWQKVLELRLQTGEPYLIFSDSVNNAMPSFQRELGLKVRQ 298

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EI L++ ++           L +  A    ++    + I   +R LDNV    ID
Sbjct: 299 SNLCSEIMLHTGTDHLGNERTAVCCLSSVNAETFLEWRDHPTFIEDVMRFLDNVLQDFID 358

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                   A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  A
Sbjct: 359 RAPDAAASAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 418

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S++L +E+G                       A  R  +                     
Sbjct: 419 SIKLGEEKGPCP-------------------DAADRGSVE-------------------- 439

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L N L ++   
Sbjct: 440 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLENLLAEKGQN 498

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +A+   +  H+GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+QS+N++
Sbjct: 499 TDAVWGSILEHEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNVF 558

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  G+K+ YYLRS+S             G  + V  T      
Sbjct: 559 LPGDVDKWDLHMLHWTAWERGVKSLYYLRSKSVQRA------AYAGAEDKVAATTSGFDV 612

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                    T   EC  CQ
Sbjct: 613 PEK------TDYDECLACQ 625


>gi|221236543|ref|YP_002518980.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter
           crescentus NA1000]
 gi|220965716|gb|ACL97072.1| ribonucleoside-diphosphate reductase alpha chain [Caulobacter
           crescentus NA1000]
          Length = 627

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/679 (28%), Positives = 296/679 (43%), Gaps = 98/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY L       E  Q  F RV+   A    +    A   Y+
Sbjct: 38  VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVSTAFA----DDADHAQRVYD 88

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W
Sbjct: 89  YMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYW 148

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 149 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 207

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM  V     + L SP                    
Sbjct: 208 IRKPSGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTNE---------------- 251

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V R++ A ALW+K+L +  +TG P++ F D  N   P         V  
Sbjct: 252 -----------VLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQ 300

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EI L++ ++           L +  A    ++    + I   +R LDNV    ID
Sbjct: 301 SNLCSEIMLHTGTDHLGQERTAVCCLSSVNAETYLEWRDHPTFIEDVMRFLDNVLQDFID 360

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                   A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  A
Sbjct: 361 RAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 420

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S++L +E+G                       A  R  +                     
Sbjct: 421 SIKLGEEKGPCP-------------------DAADRGSME-------------------- 441

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L+++   
Sbjct: 442 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQN 500

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+QS+N++
Sbjct: 501 TDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNVF 560

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  G+K+ YYLRS+S          G + K  A          
Sbjct: 561 LPGDVDKWDLHMLHWMAWERGVKSLYYLRSKSVQRAA---YAGAEDKAEAAAGGFDVPEK 617

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                    T   EC  CQ
Sbjct: 618 ---------TDYDECLACQ 627


>gi|16127722|ref|NP_422286.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter
           crescentus CB15]
 gi|13425218|gb|AAK25454.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           crescentus CB15]
          Length = 619

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/679 (28%), Positives = 296/679 (43%), Gaps = 98/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY L       E  Q  F RV+   A    +    A   Y+
Sbjct: 30  VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVSTAFA----DDADHAQRVYD 80

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N G       SCFL  V D L GI G   EN  LA   GG+G  W
Sbjct: 81  YMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYW 140

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 141 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 199

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM  V     + L SP                    
Sbjct: 200 IRKPSGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTNE---------------- 243

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                      V R++ A ALW+K+L +  +TG P++ F D  N   P         V  
Sbjct: 244 -----------VLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQ 292

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EI L++ ++           L +  A    ++    + I   +R LDNV    ID
Sbjct: 293 SNLCSEIMLHTGTDHLGQERTAVCCLSSVNAETYLEWRDHPTFIEDVMRFLDNVLQDFID 352

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                   A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  A
Sbjct: 353 RAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 412

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S++L +E+G                       A  R  +                     
Sbjct: 413 SIKLGEEKGPCP-------------------DAADRGSME-------------------- 433

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L+++   
Sbjct: 434 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQN 492

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W+IE A+ R   I Q+QS+N++
Sbjct: 493 TDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNVF 552

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  G+K+ YYLRS+S          G + K  A          
Sbjct: 553 LPGDVDKWDLHMLHWMAWERGVKSLYYLRSKSVQRAA---YAGAEDKAEAAAGGFDVPEK 609

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                    T   EC  CQ
Sbjct: 610 ---------TDYDECLACQ 619


>gi|88606797|ref|YP_504939.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           phagocytophilum HZ]
 gi|88597860|gb|ABD43330.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaplasma
           phagocytophilum HZ]
          Length = 603

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/680 (28%), Positives = 297/680 (43%), Gaps = 99/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y RD      G  +L DRY L       E  Q  F+RVA   +    +  + A   Y+
Sbjct: 13  IDYTRDDNLTNFGKAVLSDRYLLEK-----EDYQQLFVRVAQYYS----DDSQHAQRLYD 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 64  YMSKLWFMPATPILSNGGTSRGLPISCFLNETEDSLAGILNLWNENVWLASRGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 124 GNLRSIGERVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 182

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R+  +++    + D FM+ V  +  W L SP +                 
Sbjct: 183 IRRPTGGDPNRKALNIHHGVLLSDEFMEAVEHDKTWDLLSPKD----------------- 225

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  LW K+LT   ETG P+I F D  N   P+ +      V 
Sbjct: 226 ----------KCVISTVKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVK 275

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--- 637
            SNLCTEITL +  +           L +        +      I   +R LDNV+    
Sbjct: 276 MSNLCTEITLTTGEDHLKKSRTAVCCLSSLNLEYYDMWCGNPQFIEDVMRFLDNVLTDFV 335

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                 +E+A+ S    R+IG+G+MGF S L    +P+ S  A     +   ++   A +
Sbjct: 336 QKAPTELERARYSAMRERSIGIGVMGFHSFLQSKMVPFESFAATMWNKKIFSYLKSQADA 395

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA E+GA                D+       R                       
Sbjct: 396 VSRKLALEKGACP--------------DAQDANEMER----------------------- 418

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                + +++APTA+I+ I G  S  I+P   N++    ++G F V N FL   LK +  
Sbjct: 419 ---FVHKLSVAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQELLKSKGK 475

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            D+ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +  R  +I QAQS+N+
Sbjct: 476 DDDQVWSSISTNEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYICQAQSVNI 535

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  ++  AW  GLK+ YY+RS+S           V  ++N      P   
Sbjct: 536 FLPAGVHKRYLHKVHFLAWKKGLKSLYYMRSKSVQRA-----DKVSHEVNGAAAVVPRKQ 590

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             +        S  EC  CQ
Sbjct: 591 LTN-------FSYDECLSCQ 603


>gi|257462864|ref|ZP_05627270.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp.
           D12]
 gi|317060490|ref|ZP_07924975.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D12]
 gi|313686166|gb|EFS23001.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium
           sp. D12]
          Length = 752

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 225/836 (26%), Positives = 371/836 (44%), Gaps = 114/836 (13%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            K K++  DG +   + +++   +  AC+GL +V+   + S+      + ++   ++ +L
Sbjct: 4   EKRKVINRDGIVEELDIEKIREKLLRACAGL-EVNMVELESKIESIYEENITTKKIQESL 62

Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+ ++   +E ++A+V  R L+ +  REV  +                  +     + 
Sbjct: 63  INSAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGNLE---------KTISLMLS 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
            G+    L     + ++  L   +  ERD  ++Y G  +   RY L  NG   E+PQ  F
Sbjct: 114 YGLYDTRLSI-YTEQEIYELNQAIVPERDMVYDYAGASMFVHRYLLKYNGKTHELPQEVF 172

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           M +AM L++ E ++ K A E Y  LS      +TP L N       LSSCF+T + D++ 
Sbjct: 173 MIIAMLLSIHEQDRVKVAKEIYEGLSLQKISLATPILANLRIPKGNLSSCFITAIDDNIE 232

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAVNQ 
Sbjct: 233 SIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAVNQQ 292

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R GAV   +++WH+D+E FL+L+   GD R + +D+     + +LFM+RV     WTL
Sbjct: 293 GRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGEDWTL 352

Query: 502 FSPDEVSDLHDLYGKEF--EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
             P E+  L+ +   E       E YER     +I++ +K+ A  L++ M+    ETG P
Sbjct: 353 VDPYEIRKLYGVELCELYGAKFEEVYERVEREEKIQLKKKMKARDLFKAMMKSQLETGMP 412

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVC 600
           +I FKD  N R+   H G++ + NLC E   N S                     E   C
Sbjct: 413 YIFFKDRANERNHNSHEGMIGNGNLCMESFSNFSPSKNFQEEVLGNQAIRRKEMGEIHTC 472

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NL           ++L      AVR LDN ID+    + ++ K N  +R +G+G 
Sbjct: 473 NLLSLNLAEITE------EELEKYTGLAVRALDNTIDLTVTPLAESNKHNEKYRTVGVGA 526

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG    L   ++ Y   E  E   +  E I+ +A+ AS  LA++RG Y +F GS W QG+
Sbjct: 527 MGLADYLAREYMIYEDSE--EEISQLFEKIAAYALKASAFLAKDRGQYPAFSGSKWSQGI 584

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F   +     +      +       W E+   V   G+RN    AIAP  + + + G + 
Sbjct: 585 FFGKTQEWYEKHSKYAEL-------WKEVFYLVDQYGLRNGELTAIAPNTSTSLLMGATA 637

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SI P++   +++ N SG    V  +    LK R  +     +                  
Sbjct: 638 SIVPTFSRFFIEKNQSGATPRVVKY----LKDRAWFYPEFKN------------------ 675

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGL 897
                     +DP   ++  S+  +W  Q  S+ L  D       K +      AW  G 
Sbjct: 676 ----------VDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLVTAWETGC 725

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           K+ YY+R+     ++K+T                          +      ECE C
Sbjct: 726 KSVYYVRT-----IQKNT--------------------------NIINEKEECESC 750


>gi|83592780|ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575694|gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
          Length = 629

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 207/679 (30%), Positives = 300/679 (44%), Gaps = 102/679 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L+  RD      G  +L DRY L   G      Q  F RV+   A    +    A   Y+
Sbjct: 44  LERSRDDKLNAFGKAMLGDRYLLPGEG-----IQDMFARVSCAFA----DNAAHAQRLYD 94

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT+     SCFL TVPD L GI     EN  LA   GG+G  W
Sbjct: 95  AMSKLWFMPATPILSNGGTQRGLPISCFLNTVPDSLEGIVAIWNENVDLASNGGGIGTYW 154

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G NG + G+IPF++V +   +A++QG  R+G+   YL+  H ++EEFL+
Sbjct: 155 GGVRSIGEAVKG-NGATSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 213

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++ A  I D FM+ V  +  + L SP                    
Sbjct: 214 IRKASGDFNRKSLNLHHAINITDDFMEAVRDDRQFALKSPKS------------------ 255

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                     +V R + A  LW+K+L    +TG P++ F D  N   P+        V S
Sbjct: 256 ---------GEVLRSVGARQLWQKILETRLQTGEPYLLFTDTVNRALPKHQRDLGLRVSS 306

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC EITL +  +           L +       +++     I   +R LDNV    I+
Sbjct: 307 SNLCAEITLPTGRDHRGQERTAVCCLSSLNIETWDEWENAPGFIEDVLRFLDNVLSHFIE 366

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                +E+A  +    R++GLG+MGF S L    IP+ S  A          I   A +A
Sbjct: 367 TAPDGMERAAYAAMRERSVGLGVMGFHSFLQARGIPFESALAKSWNLRLFRKIRRDADAA 426

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SV+LA ERGA                D+     + R                        
Sbjct: 427 SVDLADERGACP--------------DAAERGMKAR------------------------ 448

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
              S  +AIAPTA+I+ ICG  S  ++P   N+Y    +SG F+V N  L   L  + L 
Sbjct: 449 --FSAKLAIAPTASISIICGGTSACVEPIPANVYTHKTLSGSFSVRNPHLARRLADKGLD 506

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                  +  H+GS+ ++E + DD K +  TAFEID  W+I+ A+ R  +I Q+QS+NLY
Sbjct: 507 TAETWQSIIEHEGSVQHLEGLSDDEKLVFRTAFEIDQRWIIDLAADRAPFICQSQSINLY 566

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++  AW  GLK+ YY RS+S         +   G+ ++ P        
Sbjct: 567 LPADADKWDLHMLHWTAWRRGLKSLYYCRSKSVQRAAFVGREKPSGETSSAPRA------ 620

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                        EC  CQ
Sbjct: 621 ----------DYDECLACQ 629


>gi|229586744|ref|YP_002845245.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           africae ESF-5]
 gi|228021794|gb|ACP53502.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           africae ESF-5]
          Length = 607

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 200/692 (28%), Positives = 299/692 (43%), Gaps = 95/692 (13%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           M  F        +    +      G  IL DRY +       E  Q  F RV+   A   
Sbjct: 1   MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMQG-----EDFQDLFARVSSYYAEN- 54

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              ++ A + Y  +S   FM +TP L N GT      SCFL    D L  I     EN  
Sbjct: 55  ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           LA   GG+G+ W  VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL
Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170

Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
              H ++EEF+D+R+ TG D  R+  +++    I D FMK V  N  + L SP       
Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPAT----- 225

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                  KV  K+ A  LW K+LT   ETG P++ F D  N   
Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263

Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           P+ H      V  SNLC+EITL +  +           L +       ++      I + 
Sbjct: 264 PEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323

Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  LDNV++   +           S    R++GLG+MGF S L +  +P  S  A     
Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +  E+IS     AS+E+ +E+GA                D++   +  R           
Sbjct: 384 KIFEYISAETDKASIEIGKEKGACP--------------DALDAGSNER----------- 418

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803
                           SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N
Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L   L+++   ++ + S +  H+GS+ ++  + ++ K++  TA+EID  WLIE AS R
Sbjct: 464 KHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN++L    S K L+ I+ +AW  G+K+ YY RS S    +K +   +   
Sbjct: 524 IPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVLKAD 583

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +   +   +           +  EC  CQ
Sbjct: 584 FKDLEEQNDKLAEAG--------NYEECLACQ 607


>gi|77919448|ref|YP_357263.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545531|gb|ABA89093.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 744

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/665 (27%), Positives = 296/665 (44%), Gaps = 82/665 (12%)

Query: 292 AFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYN 344
                 L +L  RY     +G  +E P   F RVA  +A  E       +    A  FY+
Sbjct: 10  LLSKNALTVLKRRYLKRDQDGRILEDPADMFRRVADAVADAETRLASGQDATSLADRFYD 69

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            ++   F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG G  +
Sbjct: 70  AMTCLEFLPNSPTLMNAGRELGQLSACFVLPVDDSMESIFEAIKQTALIHKSGGGTGFSF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G I F+KV +     + QGG R+GA    L   H D+ +F+ 
Sbjct: 130 SRIRPANDVVLSTKGVSSGPISFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIM 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           ++K    D     + N +  + + FMK V +   + L +P                    
Sbjct: 190 VKK----DLTVLTNFNLSVGLTEAFMKAVEEGQEYDLLNPRT------------------ 227

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +  +K+ A  ++ +++ M + +G P I F D  N  +P  HVG + ++N 
Sbjct: 228 ---------GEPLKKLDARKVFDRIIDMAWTSGEPGIIFLDRLNRDNPTPHVGEIEATNP 278

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           C E  L         CNLGSINL      + + D++KL  T++  VR LDNVI+IN + +
Sbjct: 279 CGEQPLLPY----ESCNLGSINLSRMVTGDGEVDWEKLRDTVQLGVRFLDNVIEINRYPL 334

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +  +   ++R IGLG+MG+   L LL +PY S +A+ +AD+ M FI+  A + SV+LA+
Sbjct: 335 PQISEMTLSNRKIGLGIMGWADMLILLGLPYNSSQAIALADKLMNFITTEARATSVKLAE 394

Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +RGA+ +F GS +DQ G  P                                   +RN+ 
Sbjct: 395 QRGAFPNFPGSSYDQAGDGP-----------------------------------LRNAT 419

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMI 821
           C  IAPT TI+ I   S  ++P +   Y++  M  D  V V+        +   +   ++
Sbjct: 420 CTTIAPTGTISIIANTSSGVEPIFAVSYIRQVMDNDVLVEVHPLFEAIAHKEGFYSPELM 479

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             +    G+I   + IP+ ++K+  TA +I P   I   +  QK  D A S  +      
Sbjct: 480 KAIAE-KGTIQGFDEIPEKVRKLFVTAHDITPEDHIHMQAAFQKHTDNAVSKTVNFPHSA 538

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + +++  +YR A+  G K     R  S      S  K  +         +   S H    
Sbjct: 539 TREEVAEVYRLAYKEGCKGVTIYRDGSRDMQVLSVAKAEEKPEEPAIPVESGKSGHKRER 598

Query: 941 PSSCT 945
           P + T
Sbjct: 599 PRALT 603


>gi|189184363|ref|YP_001938148.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181134|dbj|BAG40914.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi str. Ikeda]
          Length = 604

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 202/685 (29%), Positives = 302/685 (44%), Gaps = 96/685 (14%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
                +  ER+          L DRY L       E  Q   +R+A   A    + +  A
Sbjct: 6   KFNIKINNERNKLLSTSSQATLADRYLLKG-----ETFQDLCVRIASYYA----DNKSHA 56

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
              Y+ +S   F+ +TP L N GT      SCF+  V D LYGI     EN  LA   GG
Sbjct: 57  QRLYDYMSQHWFLPATPILSNGGTNRGLAISCFVNEVEDSLYGIVNTWIENVWLASRGGG 116

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+ W  VR +   I   NG S G+IPF+KV +   +A++QG  R+G+   YL   H ++
Sbjct: 117 IGSYWGNVRSINEKIGE-NGYSSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPISHPEI 175

Query: 460 EEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           EEF+D+R++TG D  R++ +++    I D FM  V +N  W L SP +            
Sbjct: 176 EEFIDIRRHTGGDSNRKSLNIHHGIVISDQFMHAVEKNESWNLISPYDD----------- 224

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
                           ++   + A  LW K+LT   ETG P+I F D  N   P+ H   
Sbjct: 225 ----------------RIINTVKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKL 268

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
              V +SNLC+EITL +  + T         L +        +      I   +R LDNV
Sbjct: 269 GLKVKTSNLCSEITLPTGRDYTNNIRTAVCCLSSLNLEYFGLWQSNEHFIPDIIRFLDNV 328

Query: 636 IDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           ++   +           S    R+IGLG+MGF S L   +IP AS  A     +  E I 
Sbjct: 329 LEDFINKAPDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIK 388

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               + SV LA+ERGA               ID+     + R                  
Sbjct: 389 LQTDNMSVVLAKERGAC--------------IDAQKCNIQER------------------ 416

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                    S   A+APTA+I+ I    S  I+P   N + +  ++G F++ N  L   L
Sbjct: 417 --------FSYKTAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLL 468

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + + L ++ + S +  H+GS+ ++  + D  K+++ TA+EID  WLIE A+ R ++I Q+
Sbjct: 469 ESKGLNNDQVWSSIATHEGSVQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQS 528

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QSLN++L    S + L  I+  AW   +K+ YY RS S    EK         ++ V   
Sbjct: 529 QSLNIFLPGNCSKQLLHDIHFDAWKKNIKSLYYCRSTSIQRAEK---------VSHVVTI 579

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
           D  +        ++  +D EC  CQ
Sbjct: 580 DELAKLTDKEQLATSNNDDECLACQ 604


>gi|310830453|ref|YP_003965554.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309249920|gb|ADO59486.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 748

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 236/779 (30%), Positives = 369/779 (47%), Gaps = 104/779 (13%)

Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + ++ +D+   +  ++  LI  +EP++  + +   + KL +E       +  K+   +  
Sbjct: 12  EEINAADITRTIYMTAVELISIEEPDWTYIASAAYVNKLYKEAA---LHRGYKSYPAKPY 68

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LH 308
             +     + + +G+  R L E   + +L+ L   + Y++D  F+Y+G+  L +RY    
Sbjct: 69  GSFSTLIKQLVCKGIYKRELIEEFTEQELLKLEETIDYKKDKLFDYIGIVTLQERYLASD 128

Query: 309 INGSRIEMPQAFFMRVAMGLALKE-------------------TEKEKRAVEFYNLLSSF 349
            +G  +E+PQ   M +AM L +                      E+     E Y  +S  
Sbjct: 129 YDGKTMELPQERLMLIAMDLMIDAGKMLDEKGKPTDDFLPGGRKERLSYIQEAYWAMSHL 188

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +   +TPTL N+G     QLSSCF+ TV DDL  IF +  + A L+K  GG+G     VR
Sbjct: 189 YMTTATPTLSNAGKAKGGQLSSCFIDTVDDDLRSIFDSNTDVARLSKVGGGIGVYVGKVR 248

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G   KS G++P+++  N+TAV+V+Q G RKG++  YL+ WH D+  FLDL+ N
Sbjct: 249 SRGAKIRGYEHKSSGLVPWIRQLNNTAVSVDQLGTRKGSIAVYLDVWHKDILAFLDLKLN 308

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522
            GD+R R HD+ T   IPDLFM+RV +   + LF P EV       G   E  Y      
Sbjct: 309 NGDERMRAHDIFTGVCIPDLFMERVERREEFYLFDPHEVRTFM---GWSLEDYYDEEPGD 365

Query: 523 ---ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                  ++     +     + A+ + ++M+    ETG P++ ++D  N  +P +  G++
Sbjct: 366 GTFRRKYQECVDHPLLSRVALPAIDIMKRMMKAQLETGTPYMFYRDTVNRANPNKAHGII 425

Query: 580 HSSNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQF 616
           +SSNLC EI  N S                         +  VCNL SI+L         
Sbjct: 426 YSSNLCVEIMQNMSATTVAEEKLVEIDGEKMIMTLKRPGDFVVCNLASISLARAVKEGV- 484

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               L   I   +R+LDNVID+N   + +A  +N  +RAIGLG  G    L LL I + S
Sbjct: 485 ----LERLIPIMIRMLDNVIDLNQIDVLQATHTNQKYRAIGLGTSGLHHLLALLGIMWES 540

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA E  D   E+I++ AI AS++LA+E+G+Y  FKGS W+ G +  D      +   + 
Sbjct: 541 EEANEYNDHLYEWIAYLAIKASMQLAKEKGSYPLFKGSEWETGKYFSDRDYTSGKREGKF 600

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL-YVKSNM 795
                +   W EL  +VK  G+RN   +AIAPT + + I G + SIDP Y+ L Y +   
Sbjct: 601 ----VTTEQWIELANQVKKHGIRNGYLLAIAPTGSTSIIAGTTASIDPIYKLLTYQEKT- 655

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPM 854
              + + N                                 +     + +   AF +D +
Sbjct: 656 --TYKIANP-----------------------------APDLNVKTIQYYRKNAFLLDQL 684

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             I   + RQ+ IDQ+QS NLY+  +   K    ++ QAW  G+KTTYY+RS++ T  E
Sbjct: 685 ASIRMNATRQRHIDQSQSFNLYIRPDIKAKDFLVLHLQAWKSGVKTTYYVRSQALTVDE 743


>gi|206895118|ref|YP_002246867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737735|gb|ACI16813.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 796

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/675 (26%), Positives = 299/675 (44%), Gaps = 87/675 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-------TEKEKRAVEF 342
             +    L++L  RY L   NG+ +E P+    RVA GLA  E        +      +F
Sbjct: 3   LEWSETALRVLEQRYLLRDENGNIVETPEQLMHRVAHGLAQIETVWGATSEQISSVEQDF 62

Query: 343 YNLLSSFHFMCSTPTLFNS-------GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           +++L    F+ +TPTLF++             +S+C +  + D + GIF  L + A + +
Sbjct: 63  FDILWKRDFLPNTPTLFHAGLPKDPKYRGRRFMSACIVLPIEDSIDGIFKTLWDAAKIMQ 122

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  ++ +R  G+ +  + GKS G + F+ + +     V QGGKR+GA    L   
Sbjct: 123 AGGGVGYAFSRLRPKGSLVKSSGGKSSGPVSFMHIYDVMVDVVAQGGKRRGAQMGVLNVH 182

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+ EF+D +K     +   H+ N +  + + F++   ++  + L +P           
Sbjct: 183 HPDILEFIDAKKENTSGQGPLHNFNISVAVTEEFVQAYKEDTTFKLVAPHT--------- 233

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                              +V  +++A  +  K+    + TG P I F D  N       
Sbjct: 234 ------------------GEVVGELNAREVMHKIAENAWRTGDPGIIFIDRINQLDYL-D 274

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRV 631
            G + ++N C E  L         CNLGSINL           Q+D++K   TIR AVR 
Sbjct: 275 DGRIEATNPCGEQPLPPY----GSCNLGSINLKHMLKKTDSGYQWDWEKFQRTIRLAVRF 330

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVI+ N + I + +      R IGLG+MG+  AL LL IPY S EA+E A +   F+ 
Sbjct: 331 LDNVIEANDYPIPELEDYAKKARRIGLGVMGWADALSLLGIPYDSEEALEEARKVGAFLK 390

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +  AS ELAQERG +  +  S W +   P                             
Sbjct: 391 EKSHLASQELAQERGVFEFYDQSKWKELGIP----------------------------- 421

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
                 MRN+    IAPT T++ +  V+  I+P +   + +   +G F  V   L++ LK
Sbjct: 422 ------MRNAAVTTIAPTGTLSILANVNSGIEPYFALAFERKITAGTFHEVQPTLLDVLK 475

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +R+L+ E ++  +  ++G + ++E +P+D++    TA E+ P W +   +  Q+ ID + 
Sbjct: 476 ERELYSEELVQRIIENEGKLRDLEDLPEDIRNAFPTAMEVAPEWHVRMQAAWQENIDSSI 535

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S  + L  + + + ++ IY  A+ +G K+    R +S      +       + ++    +
Sbjct: 536 SKTVNLPYQSTVEDIENIYLLAYELGTKSITVYRDKSLELQVLNVPSTSPKERSSEETQE 595

Query: 931 PNSSTHSLGIPSSCT 945
           P         P   T
Sbjct: 596 PRPKRIFPKRPEVLT 610


>gi|255514004|gb|EET90268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 762

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 196/812 (24%), Positives = 337/812 (41%), Gaps = 132/812 (16%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFS 205
           ++  D + + F+  ++E  V                 + YK++YD  + E++L      S
Sbjct: 5   VIKRDDSKVDFDRTKIENAV----------------FKAYKSVYDSNVKEAELRKRAENS 48

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                                 + +E+  T  K+ +     ++     E      ++ V 
Sbjct: 49  -------------------TTDIVKEIEATGKKEIRVEEIQDIV----EKVLMLKDQTVA 85

Query: 266 ARLLHESMMDFDLVYLANDLKYERD-FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
              +       ++      L    D        L +L  RY L   +G   E P+  F R
Sbjct: 86  KSYILYRHKKAEIRAFRASLGIPDDGLKLPINTLIVLASRYLLKGPDGKIAESPKQLFTR 145

Query: 324 VAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
           V+  +A  E +            +EFY+ +++F FM ++PTL N+GT+  QLS+CF+  V
Sbjct: 146 VSHYIAAAEKKFGKSDDETNALEMEFYDAITNFKFMPNSPTLMNAGTKLGQLSACFVLPV 205

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D +  IF A++  A++ +  GG G  ++ +R     +  T G + G + F+KV +    
Sbjct: 206 GDSIVEIFDAVKYAAIIHQSGGGTGFSFSRLRPTNDMVKSTGGVASGPVSFMKVFDIATE 265

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V QGGKR+GA    L   H  + +F+       ++     + N +  I D FMK +  N
Sbjct: 266 QVKQGGKRRGANMGILRVDHPSILDFI----VAKENEGTLRNFNISVAITDEFMKALEAN 321

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             ++L +P                              KV  K++A A+W  ++TM ++T
Sbjct: 322 RDYSLVNPR---------------------------NGKVVGKLNARAVWNLIITMAWKT 354

Query: 557 GHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612
           G P + F D  N         +G V S+N C E  L         CNLGSIN+       
Sbjct: 355 GDPGLVFLDRINSSYSNPVPTLGPVESTNPCGEQPLYPY----DSCNLGSINMAKMLKKN 410

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 D+D+L    R  VR LDNVI+ N + +++ +      R IGLG+MG+   L  L
Sbjct: 411 DGQYDIDWDELKRITRMGVRFLDNVIESNTYPLKEIEDVTKKIRRIGLGIMGWADMLIKL 470

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-LWDQGVFPIDSIGLL 729
            I Y S EA+ +A++ M FI+ +A   S ELA+ERG + +FK S  +  G  P       
Sbjct: 471 GIRYDSNEALMLAEKVMSFITENARKMSEELAEERGPFPAFKDSIWYKLGYKP------- 523

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788
                                       +RNS    IAPT TI+ I  G SQ I+P +  
Sbjct: 524 ----------------------------LRNSTVTTIAPTGTISIIAGGASQGIEPIFSV 555

Query: 789 LYVKSN---MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +Y+++    +  +   VN+       + + + + ++  L     SI ++E IP +++++ 
Sbjct: 556 VYMRNVHESLGSNLIEVNNEFEAMAIENNFYSDELMKKLAGRV-SIQDVEEIPQEIRRLF 614

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA++I P W +   +  QK++D A S  +      + + ++  Y  A+ +G K     R
Sbjct: 615 VTAYDIAPEWHVRMQAAFQKYVDNAVSKTINFPSWATPQDIEKAYVLAYKLGCKGITVYR 674

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             S +     +++           T  +    
Sbjct: 675 DSSKSVQVLQSVEQQKTLTEPSSKTIKSIKEK 706



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 21/165 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+     FD +KI  A+ KA+ +V      +   ++   +N T   V  +       
Sbjct: 5   VIKRDDSKVDFDRTKIENAVFKAYKSVY-DSNVKEAELRKRAENSTTDIVKEI--EATGK 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM      + + Y+LYR +++++RA ++                D
Sbjct: 62  KEIRVEEIQDIVEKVLMLKD-QTVAKSYILYRHKKAEIRAFRASLGIP-----------D 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           DG  +  N     +IV  +   L+    K  ++E+ K ++  +S 
Sbjct: 110 DGLKLPIN----TLIVLASRYLLKGPDGK--IAESPKQLFTRVSH 148


>gi|317131233|ref|YP_004090547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ethanoligenens harbinense YUAN-3]
 gi|315469212|gb|ADU25816.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ethanoligenens harbinense YUAN-3]
          Length = 762

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/672 (26%), Positives = 291/672 (43%), Gaps = 91/672 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343
                    +L  RY +   +G   E  +  F RVA  +A  +      A        FY
Sbjct: 1   MDITPNARTVLEKRYLIRDADGRPTETIEELFHRVADAIAAPDRTYNPDADIKALADRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
             ++   F+ ++PTL N+G    QL++CF+  V D +  IF A+++ A++ K  GG G  
Sbjct: 61  ARMTKLEFLPNSPTLMNAGRPLGQLAACFVLPVEDSMEAIFEAIKQAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ ++ T G + G + F++V N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGSTVNTTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +KN  D      + N +  I + FM+ V  +  + L  P+                  
Sbjct: 181 DCKKNNAD----ITNFNISVGITEAFMRAVEADEEYDLIDPNTKESTG------------ 224

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                          ++SA  ++ K++   +  G P I F D  N  +    VG + S+N
Sbjct: 225 ---------------RLSAREVFEKIVDAAWRNGEPGIIFLDRLNRDNMVPSVGAIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDI 638
            C E  L         CNLGS+NL       +      ++DKLA  +R AV  LDNVID 
Sbjct: 270 PCGEQPLLPY----EACNLGSVNLHRMLRRQEDGASVINWDKLADVVRDAVHFLDNVIDA 325

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +        R IGLG+MG+   L  L IPY S EAV + ++ M FI+  A SAS
Sbjct: 326 NRYPLAQIDHMTKQTRKIGLGVMGWADLLLELGIPYNSDEAVALGEKVMGFITDTARSAS 385

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             LAQ RGA+  F+ S    G                                      +
Sbjct: 386 AGLAQVRGAFPLFEESTLKNGTP------------------------------------V 409

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWD 817
           RN+    IAPT T++ I G S  ++P +  +++++ M G +    N  L   L++R L+ 
Sbjct: 410 RNATMTTIAPTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTELVEANPVLRQLLEERGLYS 469

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E ++  +   +GS+ +I+ +P+D++++   A +I P + I+  +  Q+  D A S  +  
Sbjct: 470 EDLMRQIA-QEGSLAHIDALPEDIRRVFVCAHDISPEYHIKMQAAFQRRTDNAVSKTVNF 528

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             + +   +  +Y  A+ +G K     R  S  +          GK+NA       ++  
Sbjct: 529 AHDATIADVRRVYMLAYELGCKGVTIYRDGSRDAQVL-----NIGKVNAEKPAATEAAPS 583

Query: 937 SLGIPSSCTSDT 948
             G   +     
Sbjct: 584 VSGTARAAGLQP 595


>gi|190571531|ref|YP_001975889.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018934|ref|ZP_03334742.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357803|emb|CAQ55259.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995885|gb|EEB56525.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 594

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 194/681 (28%), Positives = 301/681 (44%), Gaps = 101/681 (14%)

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
            + Y +D      G  +L DRY +       E  Q  F+R+A   +  +      A   Y
Sbjct: 5   AINYAKDSKLTDFGKAVLLDRYLIEN-----ESYQDLFIRIANYYSDNKE----HAQRLY 55

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           + +S+  FM STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ 
Sbjct: 56  DYMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSY 115

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           W  +R +G  + G +GK+ G++PF+ V N   +A++QG  R+G+   YL  WH ++EEFL
Sbjct: 116 WGNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFL 174

Query: 464 DLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           DLRK TG D  R+  +++ A  + D FM+ V  +  W L SP                  
Sbjct: 175 DLRKPTGGDPNRKALNIHHAVIVTDKFMQAVEDDQEWDLISPHNN--------------- 219

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VV 579
                       KV   + A  +W K+LT   ETG P+I F D  N   P+ +      +
Sbjct: 220 ------------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDI 267

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
             SNLC+EITL +  +           L +       ++      I   +R LDNV++  
Sbjct: 268 KMSNLCSEITLTTGYDHLKKSRTAVCCLSSVNLEYYEEWKDNELFIEDIMRFLDNVLEDF 327

Query: 640 CHTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            +      +         R+IGLG+MGF S L    +P+ S  A +   +  + +   A 
Sbjct: 328 INQAPNEIQRAKYSAIRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKVFKHLREQAD 387

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
             S +LA+E+G                     L A+  D +                   
Sbjct: 388 VVSKKLAEEKGPC-------------------LDAKEIDLME------------------ 410

Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
              R ++ +AIAPTA+I+ I G  S  I+P   N++++  ++G F V N FL   L +++
Sbjct: 411 ---RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKN 467

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
             ++ + S +  ++GS+ +++ +    K    TA+E+D  W+IE AS R  +I Q+QS+N
Sbjct: 468 QDNDEIWSSISTNEGSVQHLDFLSKHEKLTFKTAYELDQQWIIEHASDRTPYICQSQSVN 527

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           L+L      + L  I+  AW  GLK+ YY RS+S    +K +             TD   
Sbjct: 528 LFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD--- 584

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                       +  EC  CQ
Sbjct: 585 -----------INYDECLSCQ 594


>gi|85723395|gb|ABC78338.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus
           aciditrophicus SB]
          Length = 771

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/677 (25%), Positives = 297/677 (43%), Gaps = 84/677 (12%)

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET 333
           D ++    + +      +     +++L  RY     +G+ +E P   F RVA  +A  + 
Sbjct: 26  DSEMKKRTSSIDIS---SLTDNAIKVLGRRYLKRDRDGNALETPSQMFKRVADTIAAADR 82

Query: 334 EKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387
               +      + +FY ++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A+
Sbjct: 83  IFNDQADTAGLSDQFYRMMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAV 142

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +  A++ K  GG G  ++ +R     +  T G S G I F++V +     + QGG R+GA
Sbjct: 143 KFTALIHKSGGGTGFSFSRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGA 202

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
               L   H D+  F+  +     D+ + ++ N +  + ++FM  V  +  + L +P + 
Sbjct: 203 NMGILRVDHPDIMNFIMCKA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRD- 257

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
                                      +V   ++A  ++ +++   +E G P I F D  
Sbjct: 258 --------------------------GQVIGTLNARKVFDRIVAQAWENGEPGIVFLDRL 291

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           N  +P  H+GV+ S+N C E  L         CNLGSINL     N + ++ +L   +  
Sbjct: 292 NRDNPTPHIGVIESTNPCGEQPLLPY----ESCNLGSINLGKMVINGEVNWKRLRDVVNL 347

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV  LDNV++IN + +    +    +R IGLG+MG+   L  L IPY S  A+E+A+E M
Sbjct: 348 AVHFLDNVVEINQYPLPIIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVM 407

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           +FI+     AS  LA++RG + +FK SL+D QG  P                        
Sbjct: 408 KFINTEGHDASHALAKKRGPFPNFKESLYDKQGKAP------------------------ 443

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSF 805
                      +RN+    IAPT TI+ I   S  ++P +   Y++  M  D    +N F
Sbjct: 444 -----------IRNATVTTIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPF 492

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                K+R  + + ++  +    G+I +++ +P D++ +  TA +I P   I   +  QK
Sbjct: 493 FEAMAKERGFYSKELMRKIAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQK 551

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           + D A S  +      +   +  ++R A+ +  K     R  S  +   ST K  +  + 
Sbjct: 552 YTDNAVSKTVNFAHTATIDDVAKVFRLAYQLDCKGVTIYRDGSRDNQVLSTGKEREQPVQ 611

Query: 925 AVPVTDPNSSTHSLGIP 941
                            
Sbjct: 612 KSMPEGSKLVKRERPKA 628


>gi|167769961|ref|ZP_02442014.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM
           17241]
 gi|167667795|gb|EDS11925.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM
           17241]
          Length = 761

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/668 (26%), Positives = 290/668 (43%), Gaps = 87/668 (13%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343
                  L +L  RY      G  IE  +  F RVA  +A  +     +         FY
Sbjct: 7   MKIGKNALTVLERRYLKKDEHGENIETVEQMFRRVADAIASADAAYSGKTDVAALSNRFY 66

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            ++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG G  
Sbjct: 67  EMMTNLEFLPNSPTLMNAGKELGQLSACFVLPVGDSMEEIFEAIKQAALIHKSGGGTGFS 126

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F++V N    AV QGG R+GA    L   H D+ EF+
Sbjct: 127 FSRLRAAGATVRSTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRIDHPDILEFI 186

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +KN  D      + N +  I + FM+ V Q   + L  P                   
Sbjct: 187 DCKKNNAD----ITNFNISVGITEEFMQAVQQGNAYELVDPKTKQA-------------- 228

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                          ++ A  ++ K++   +  G P I F D  N  +     G + S+N
Sbjct: 229 -------------VGQLDAREVFDKIVESAWRNGEPGIIFLDRLNRDNVVPSQGEIESTN 275

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL+            DYDKL  T+R AV  LDNVID+N
Sbjct: 276 PCGEQPLLPY----ESCNLGSINLVNMLKCENGAYAVDYDKLGRTVRDAVHFLDNVIDVN 331

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +   +    R IGLG+MG+   L  L +PY S EAV +A   MEFI+    + S 
Sbjct: 332 KYPLAEIDVTTKQTRKIGLGVMGWSDMLAYLGVPYNSDEAVALARRVMEFITKTGRAESA 391

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+ RGA+  F+ S++  G                                      +R
Sbjct: 392 ELAKVRGAFPLFEKSIYAGGTP------------------------------------LR 415

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N+    IAPT T++ I G S  ++P +  +++++ M G +   VN  L   L+ R L+ +
Sbjct: 416 NATVTTIAPTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTEMIEVNPVLKEILEARGLYSD 475

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            ++  +   +GS+ +IE IP D++++   + ++ P++  +  +  Q++ D A S  +   
Sbjct: 476 GLMKKIAA-EGSLQHIEEIPADIRRVFVCSHDVSPLYHTKMQAAFQQFTDNAVSKTVNFK 534

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDGKLNAVPVTDPNSST 935
            + + + +  +Y  ++ +G K     R  S  S   +  ++K   G              
Sbjct: 535 HDATIEDVREVYMLSYELGCKGVTIYRDGSRDSQVLNIGSVKKEGGAPAKAEQPAGFGQI 594

Query: 936 HSLGIPSS 943
                P  
Sbjct: 595 KPRPRPEV 602


>gi|57234895|ref|YP_181092.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           ethenogenes 195]
 gi|57225343|gb|AAW40400.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 761

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 179/660 (27%), Positives = 286/660 (43%), Gaps = 85/660 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E           R  EFY
Sbjct: 20  LKLTDNAMCVLERRYLKKDKQGKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFY 79

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           N+++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 80  NIMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFI 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
               +  D      + N +  I D FM+ V     + L +P                   
Sbjct: 200 ----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLLNPH------------------ 237

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V  +++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 238 ---------NGEVVSRLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL             DY KL+  +++AVR LDNVID+N
Sbjct: 289 PCGEQPLLPY----ESCNLGSINLSRMVTVSGGQAVVDYKKLSRVVKSAVRFLDNVIDVN 344

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + + ++     R IGLG+MGF   L  L IPY S  ++++A+E M F++  A   S 
Sbjct: 345 KFPLPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSS 404

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L    G+  +   +P + K++  TA +I P W +   +  QK  D A S  +   
Sbjct: 490 ELIKSLAE--GAHLDEADVPAEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            E     +  +Y+ A    LK     R  S      ST K  +       V +PN +   
Sbjct: 548 REAVEGDVAEVYKMAHDSNLKGITIYRDGSREDQPMSTGKAENKIETPAAVVNPNLAPRK 607


>gi|212704402|ref|ZP_03312530.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098]
 gi|212672123|gb|EEB32606.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098]
          Length = 756

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/654 (26%), Positives = 287/654 (43%), Gaps = 92/654 (14%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFMC 353
           L  RY         E P+  F RVA  +A +E + E+        A +FY+L++S+ F+ 
Sbjct: 22  LQKRYLHKKADGSTETPRDLFWRVASAIAAEEAKYERSPFTAEDLARQFYDLMTSWRFLP 81

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           ++PTL N+ +   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   + 
Sbjct: 82  NSPTLMNAASELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPKASR 141

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+  
Sbjct: 142 VGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDIVEFIRAKEKEGE-- 199

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              ++ N +  + + FM+ V ++  + L  P                             
Sbjct: 200 --FNNFNLSVGLTEAFMQAVERDENYELTDPHT--------------------------- 230

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            KV   + A  ++  ++   ++TG P I F D  N  +P    G + S+N C E  L   
Sbjct: 231 GKVTGSLRAREIFDLLVCRAWQTGDPGIVFLDRINRDNPTPAQGEIESTNPCGEQPLLPY 290

Query: 594 SEETAVCNLGSINLLAHFANNQ----------FDYDKLASTIRTAVRVLDNVIDINCHTI 643
                 CNLGSINL   F               D+D L   +  AVR LDNVID +   +
Sbjct: 291 ----EACNLGSINLACFFVPGHASDEDPAAAGIDWDGLKQVVHLAVRFLDNVIDASRFPL 346

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++  ++   +R IGLG+MGF   L  L IPY S   + +A+  M FI+    +AS  LA+
Sbjct: 347 DRIDETVRRNRKIGLGVMGFADLLFQLGIPYDSEAGIALAERIMGFINAEGHAASARLAE 406

Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ERG + ++  S++ Q G  P                                    RN+ 
Sbjct: 407 ERGPFPAYAESVFPQRGEGP-----------------------------------YRNAT 431

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  ++P +   + ++ + G+    VN +    LK+  L    ++
Sbjct: 432 VTTIAPTGTLSIIGGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALKEAGLGTPELM 491

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             +    GSI +++ +P  ++K+  TA +IDP+W +   +  Q+  D A S  + L    
Sbjct: 492 EQVVE-KGSIQSLDALPAAMRKVFVTAMDIDPVWHLRMQAAFQRHTDNAVSKTVNLPHSA 550

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           + + +  IY  A+  G K     R    +    +T +G   K++          
Sbjct: 551 TEQDIHDIYWLAYKEGCKGVTVYRDGCKSLQVLATGEG-QKKMDGEAPAPAEKP 603


>gi|161347547|ref|YP_462506.2| ribonucleotide-diphosphate reductase subunit alpha [Syntrophus
           aciditrophicus SB]
          Length = 743

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 169/659 (25%), Positives = 291/659 (44%), Gaps = 81/659 (12%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345
                +++L  RY     +G+ +E P   F RVA  +A  +     +      + +FY +
Sbjct: 13  LTDNAIKVLGRRYLKRDRDGNALETPSQMFKRVADTIAAADRIFNDQADTAGLSDQFYRM 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 73  MTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKFTALIHKSGGGTGFSFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G I F++V +     + QGG R+GA    L   H D+  F+  
Sbjct: 133 RLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMNFIMC 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+ + ++ N +  + ++FM  V  +  + L +P +                   
Sbjct: 193 KA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRD------------------- 229

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V   ++A  ++ +++   +E G P I F D  N  +P  H+GV+ S+N C
Sbjct: 230 --------GQVIGTLNARKVFDRIVAQAWENGEPGIVFLDRLNRDNPTPHIGVIESTNPC 281

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL     N + ++ +L   +  AV  LDNV++IN + +  
Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVINGEVNWKRLRDVVNLAVHFLDNVVEINQYPLPI 337

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +    +R IGLG+MG+   L  L IPY S  A+E+A+E M+FI+     AS  LA++R
Sbjct: 338 IAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVMKFINTEGHDASHALAKKR 397

Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           G + +FK SL+D QG  P                                   +RN+   
Sbjct: 398 GPFPNFKESLYDKQGKAP-----------------------------------IRNATVT 422

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ I   S  ++P +   Y++  M  D    +N F     K+R  + + ++  
Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPFFEAMAKERGFYSKELMRK 482

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
           +    G+I +++ +P D++ +  TA +I P   I   +  QK+ D A S  +      + 
Sbjct: 483 IAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQKYTDNAVSKTVNFAHTATI 541

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             +  ++R A+ +  K     R  S  +   ST K  +  +                  
Sbjct: 542 DDVAKVFRLAYQLDCKGVTIYRDGSRDNQVLSTGKEREQPVQKSMPEGSKLVKRERPKA 600


>gi|225849392|ref|YP_002729556.1| ribonucleoside-diphosphate reductase subunit alpha (ribonucleotide
            reductase) [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643585|gb|ACN98635.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
            reductase) [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 1222

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 212/555 (38%), Positives = 318/555 (57%), Gaps = 40/555 (7%)

Query: 369  SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             +C++  + D L  I    +E A LAKY+GG+G D T +R  G+ IH  N KS G+IPF+
Sbjct: 643  HNCYVNVIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGIIPFI 702

Query: 429  KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            K+ +    A+ QGG+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD 
Sbjct: 703  KIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDE 762

Query: 489  FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             M+R+ +     LF P E   L   +G+EF+  YE+   +A++GE+K+++KI +   ++K
Sbjct: 763  LMRRIKEGEPIYLFDPAECPKLVTAWGEEFKKEYESCIEKAEKGELKLWKKIDSRDFYKK 822

Query: 549  MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
             L  L +TGHPW+TFKD  N ++P     V++SSNLCTEI++ +S E TAVC L S+NL 
Sbjct: 823  YLFKLAKTGHPWLTFKDRHNEKNPCPQYSVINSSNLCTEISIPNSPESTAVCTLASVNLA 882

Query: 609  AHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
             H   +   FD+DKL  T+ T V  LDN++D N +  E+++K+    R IG+G+MGF  A
Sbjct: 883  RHVKEDKSDFDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMDLRPIGIGVMGFHEA 942

Query: 667  LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
            L  L IPY S +AVE A +  +F+     + S ELA+ERGA+  +  + ++         
Sbjct: 943  LIKLGIPYDSDKAVETARKIAKFMREVTYAKSEELAKERGAFPHYYEANYNYPP------ 996

Query: 727  GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                                            RN+  +A+APTA+I+ I G S SID  +
Sbjct: 997  -------------------------------RRNAVLLAVAPTASISIIAGTSSSIDNYF 1025

Query: 787  QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIH 845
             N++ +  +SG F V+N  L+ EL+++ LW E +   +K H GSI  IE +   + K ++
Sbjct: 1026 SNIFSRDTLSGKFIVINKPLMKELEEKGLWSEELAEKIKAHQGSIQYIEELDGKIDKSLY 1085

Query: 846  ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             TA+E+ P   I+ A+  Q++IDQA S +LY++E    K++ IY  AW  GLK+TYY   
Sbjct: 1086 KTAYEVSPYRQIDIAAAFQEYIDQAVSKSLYIEEDLRDKMEDIYMYAWEKGLKSTYYCFI 1145

Query: 906  RSATSVEKSTLKGVD 920
                  EK TL    
Sbjct: 1146 DKTVKGEKYTLNVNK 1160



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 26/231 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202
           ++  DG++  F  K+L   +     GL+      ++ +  K +     + ++  +L+  +
Sbjct: 5   VVKRDGSVEKFQMKKLVDAIFALLEGLELPDDYEIVFKVAKELDLKIPEKVTTEELDYLV 64

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI K   Y  +  R LL+ + R +                       F  YI  
Sbjct: 65  LKAIEHLIPKNYIYDTLATRQLLKIINRRIDRRF-----------------NSFKDYINY 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321
            V+ +LL   ++ FD+  L   + Y RD+  +Y GL  L DRY +       IE PQ FF
Sbjct: 108 AVEEKLLKPELLQFDIDRLEKSIDYSRDYNLDYFGLSTLKDRYLMKDRDFETIEKPQWFF 167

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           MRVAMG+   E E     ++ YN LS+  ++ STPTLFNSGT   Q SSCF
Sbjct: 168 MRVAMGIGNTEDE----IIKIYNKLSNLEYLHSTPTLFNSGTLTNQYSSCF 214


>gi|157825768|ref|YP_001493488.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           akari str. Hartford]
 gi|157799726|gb|ABV74980.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia
           akari str. Hartford]
          Length = 607

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 199/670 (29%), Positives = 295/670 (44%), Gaps = 95/670 (14%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
             G  IL DRY +       E  Q  F RV+   A      ++ A + Y  +S   FM +
Sbjct: 23  PFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYEYMSKMWFMPA 73

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W  VR +   I
Sbjct: 74  TPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGI 133

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDR 473
               G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  
Sbjct: 134 RD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVN 192

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
           R+  +++    I D FMK V  N  + L SP                             
Sbjct: 193 RKALNIHHGIAITDEFMKAVENNTDFDLISPAT--------------------------- 225

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590
            KV  KI A  LW K+LT   ETG P++ F D  N   P+ H      V  SNLC+EITL
Sbjct: 226 KKVVNKIRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITL 285

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK--- 647
            +  +           L +       ++      I + +  LDNV++   +         
Sbjct: 286 PTGIDHLGKSRTAVCCLASLNLEYYEEWKDDKEFIYSIMLFLDNVLEDFINKAPNTMARA 345

Query: 648 -KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             S    R++GLG+MGF S L +  +P  S  A     +  E+IS  A  AS+E+ +E+G
Sbjct: 346 KYSALRERSVGLGVMGFHSFLQIKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A                D++   +  R                           SN  AI
Sbjct: 406 ACP--------------DALDAGSNER--------------------------FSNKTAI 425

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
            H+GS+ ++  + +  K++  TA+EID  WLIE AS R  +I QAQSLN+++    S K 
Sbjct: 486 THEGSVQHLTFLSEAEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFVPGNVSKKY 545

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           L+ I+ +AW  G+K+ YY RS S    +K +   +      +   +   +          
Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDILKADFKDLEKQNDKLTEAG------- 598

Query: 945 TSDTECEVCQ 954
            +  EC  CQ
Sbjct: 599 -NYEECLSCQ 607


>gi|116754614|ref|YP_843732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta thermophila PT]
 gi|116666065|gb|ABK15092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta thermophila PT]
          Length = 688

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 190/781 (24%), Positives = 313/781 (40%), Gaps = 138/781 (17%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-------SKIVLSETYKNMYDGLSESDL 198
           +I   DG ++ F+  R+   + +A + L  V        +  V+    +   D +   + 
Sbjct: 15  RIRKRDGRIVDFDPSRISRAISKAFNALGIVDEKTPVELAGRVVDVVDERFRDEIPSVED 74

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
              ++      +  +  YA+V                                       
Sbjct: 75  VQDIVEE----VLIDAGYAQVAK------------------------------------- 93

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317
                     +       ++    + L    D       +++L  RY      G+ +E P
Sbjct: 94  --------AYILYRQRRSEIREAKHYLGVADDLKLSVNAIEVLKKRYLKRDEFGNVVETP 145

Query: 318 QAFFMRVAMGLALKETEKE----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
              F RVA  ++  E   E        +F +++ S  F+ ++PTL N+G    QLS+CF+
Sbjct: 146 GEMFERVASAVSAVERRYEGDADDARKKFLSMMRSLSFLPNSPTLMNAGLPLGQLSACFV 205

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D + GIF AL+  A++ +  GG G  ++ +R  G  +  T G + G + F+++ + 
Sbjct: 206 VPVEDSIAGIFDALKYMALIHQSGGGTGFSFSRLRPKGDVVRSTGGIASGPVSFMRIFDA 265

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               + QGG+R+GA    L   H D+ EF+  +     DR    + N +  I + FM++ 
Sbjct: 266 ATDVIKQGGRRRGANMGILRVDHPDITEFIACK-----DRGGMDNFNISVAITEEFMRQC 320

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++    L +P                              +   ++SA  L   M T  
Sbjct: 321 ERDGSVELINPRT---------------------------GEATGEMSARDLMVMMATYA 353

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           +  G P + F D  N   P    G++ ++N C E  L         CNLGS+NL      
Sbjct: 354 WRRGDPGVVFIDRINALHPVP--GIIEATNPCGEQPLLPF----ESCNLGSVNLSRMVER 407

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            +  +D+L  T+R AVR LD+VID N   +++ + +    R IGLG+MGF   L  L + 
Sbjct: 408 GEISWDRLEETVRLAVRFLDDVIDANRFPLKQIEDATLRTRKIGLGVMGFAEMLIQLGVS 467

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           YAS +A+ IA+E M FI+  A   S  L +ERG++  F+ S                   
Sbjct: 468 YASQDALRIAEELMAFITKTAREESCALGRERGSFPLFEES------------------- 508

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                   S   WD          MRN+    IAPT TI+ I G S  I+P +   +V+ 
Sbjct: 509 --------SLKKWDA---------MRNATVTTIAPTGTISIIAGTSSGIEPLFAVSFVRH 551

Query: 794 NMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            + G      +        +R +   A+ +++    GSI  I  IPDD+K++  TA +I 
Sbjct: 552 VLEGARLIESSPLFERMASERGIMTPALRAEVARR-GSIQEIPGIPDDIKELFLTALDIS 610

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P   +   +  QK  D A S  + L E  S   +  +YR A+ +G K     R  S   V
Sbjct: 611 PEQHVRIQAAFQKHTDNAVSKTVNLPEKASVSDVIKVYRLAYELGCKGITVYRYGSREQV 670

Query: 912 E 912
            
Sbjct: 671 L 671



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 11/124 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  FDPS+ISRAI KAF A+        I  +     L  + V  + +  + 
Sbjct: 15  RIRKRDGRIVDFDPSRISRAISKAFNAL-------GIVDEKTPVELAGRVVDVVDERFRD 67

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA---PKLK 146
             I  +ED+QD VE  L+ +G+ ++ + Y+LYR+ RS++R A+ +      +      ++
Sbjct: 68  -EIPSVEDVQDIVEEVLIDAGYAQVAKAYILYRQRRSEIREAKHYLGVADDLKLSVNAIE 126

Query: 147 IMMD 150
           ++  
Sbjct: 127 VLKK 130


>gi|269958630|ref|YP_003328417.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           centrale str. Israel]
 gi|269848459|gb|ACZ49103.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           centrale str. Israel]
          Length = 618

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 192/680 (28%), Positives = 294/680 (43%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G  +L DRY L       E  Q  F+RV+   +  +      A   Y+
Sbjct: 29  VDRTRDNNLTSFGKAVLSDRYLLDD-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 79

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 80  YMSKLWFMPATPILSNGGTGRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 139

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 140 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 198

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++    + D FM+ V Q+  W L SP +                 
Sbjct: 199 IRKPTGGDPNRKALNIHHGVLLTDEFMRAVEQDKPWDLVSPKD----------------- 241

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  LW K+LT   ETG P++ F D  N   P  +      V 
Sbjct: 242 ----------RCVISTVRARDLWIKILTTRVETGEPYVVFVDTVNKHKPDIYKELGLEVK 291

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLCTEITL +  +           L +        +      +   +R LDNV+    
Sbjct: 292 MSNLCTEITLATGEDHLGRSRTAICCLASLNLEYYDMWSGEPLFVEDVMRFLDNVLTDFI 351

Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +     IE+A+ +    R+IG+G+MGF S L    +P+ S  A     +  E I   A  
Sbjct: 352 NKAPPEIERARYAAMRERSIGVGVMGFHSFLQSKMVPFESFAASVWNKKIFEHIKRQADE 411

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA E+G                 D++      R                       
Sbjct: 412 VSRKLAMEKGPCP--------------DAVDANKMER----------------------- 434

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                + ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   L  + L
Sbjct: 435 ---FVHKLSIAPTASISIISGNTSPGIEPYAANVFTHKTLTGSFVVRNKFLQKLLASKGL 491

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N+
Sbjct: 492 DNDQVWSSISTNEGSVQHLDFLTEQEKLVFRTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 551

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  G+K+ YYLRS+S    +K  +  V G     P     + 
Sbjct: 552 FLPAGVHKRYLHKIHFLAWKKGVKSLYYLRSKSVQKADK--VSHVHGGQAVSPQRQITN- 608

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 609 ----------FDYDECLACQ 618


>gi|224539246|ref|ZP_03679785.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519128|gb|EEF88233.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 708

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 208/675 (30%), Positives = 331/675 (49%), Gaps = 75/675 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KRNG    ++  K++ AI K+F +             + I  L  +    +L    
Sbjct: 1   MEITKRNGMAEPYNKEKVAIAIRKSFASTGQ------SVTDETILTLVNEVENFIL---S 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                H+E IQD+VE SLM+ G +   + Y+LYR +R++ R A +H  ++         +
Sbjct: 52  DTGNRHVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALNHIVNETGDETITDTL 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207
              G                     ++  S  +L+E + + Y   ++ ++  TALI ++ 
Sbjct: 112 KGIGQDFP-----------------RNEYSLTLLAEKFSSFYKPEMTPNERLTALIKAAV 154

Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
            L  +E P++  + AR L  +L +++          + + +++ L         +EG+  
Sbjct: 155 ELTTQEAPDWEFIAARLLNFQLSKKLTEQAEFAGVLSFYEKLRYL--------TDEGLYG 206

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVA 325
             +  S    ++  +A  +  ERD  F Y GL +L  RY +       IE  Q  ++ +A
Sbjct: 207 SYILASYSPEEIEEVAGFICPERDKLFNYSGLDLLVKRYLIRTRSHEPIESVQEMYLGIA 266

Query: 326 MGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           + LA+ E   + +   +FY+LLS      +TPTL N+   + QLSSCF+ TVPD L GI+
Sbjct: 267 LHLAMPERHNRLQWVRKFYDLLSKLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEGIY 326

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++   AM++K+ GG+G  +  VR  G +I G  G + GVI ++K+ NDTAVAV+Q G R
Sbjct: 327 RSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLGMR 386

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502
           +GAV  YL+ WH D+ EFL LR N GDDR + HD+  A   PDLF +   +  N  W LF
Sbjct: 387 QGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQSWYLF 446

Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P+E+       L D YG+E+E  Y +    +   +    R +S   + R +L    ETG
Sbjct: 447 CPNEIMTIKGYCLEDYYGEEWEKRYLDCVNDSRLSK----RSMSIKDIVRLVLRSAVETG 502

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------- 596
            P+   +D  N  +P  H G+++ SNLCTEI  N S+ E                     
Sbjct: 503 TPFTFNRDAVNRANPNNHRGIIYCSNLCTEIAQNMSAIETVSTEIRTEDGDMVVVKTVRP 562

Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
               VCNL S++L         D  ++   + T VR LDNVID+N + I  A+ +NH +R
Sbjct: 563 GDFVVCNLASLSLGHL---PLEDEQQMKEKVATVVRALDNVIDLNFYPIPFAQITNHHYR 619

Query: 655 AIGLGLMGFQSALHL 669
           +IGLG+ G+  AL  
Sbjct: 620 SIGLGVSGYHHALAS 634


>gi|218887121|ref|YP_002436442.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758075|gb|ACL08974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 770

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 179/677 (26%), Positives = 291/677 (42%), Gaps = 96/677 (14%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341
           D A       +L  RY+    +G   E  +A F R+A  +A +E + +K        A E
Sbjct: 21  DVALNPNARVVLAKRYYRKGPDGQPYEDARALFWRIAGAIAAEEGKYKKSPYKADALARE 80

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 81  FYDLMTGWKFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 140

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   A +  T G + G + FL++ N     + QGG R+GA    L   H D+ E
Sbjct: 141 FSFSRLRPKEARVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIIE 200

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FMK V  +  + L +P                 
Sbjct: 201 FIRAKERDGE----FNNFNLSVGLTEAFMKAVEADEEYDLVAPHT--------------- 241

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V  ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 242 ------------GQVRERLKARKVFEMLVQKAWESGDPGIVFLDRINRDNPTPKQGEIES 289

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----------------NQFDYDKLASTI 625
           +N C E  L         CNLGSINL A F                     D+ +L   I
Sbjct: 290 TNPCGEQPLLPY----EACNLGSINLSAFFVPGTATAREGGLPHPSPEKAIDWAELKRVI 345

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
              VR LDNVID +   +E+  ++ H +R IGLG+MG+   L+ L IPY S EA+ + + 
Sbjct: 346 HLGVRFLDNVIDASRFPLERITETVHRNRKIGLGVMGWADLLYQLGIPYDSQEAIGLGER 405

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M+F+     +AS  LA+ERG + +F  S +                          R  
Sbjct: 406 MMQFVQDEGRAASKVLAKERGPFPAFAESTFA------------------------ERDM 441

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNS 804
                        RN+    IAPT T++ I G S  I+P +   + ++ M G+    VN 
Sbjct: 442 GP----------YRNATVTTIAPTGTLSIIAGCSSGIEPLFALCFSRNVMDGERLVEVNP 491

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                L+      + ++  +    GSI  ++ +P+DL++++ TA +I P+W +   +  Q
Sbjct: 492 HFEAALRDTGSHSKKLMEAVAE-KGSIQAMDHLPEDLRRVYVTAMDIAPVWHLRMQAAFQ 550

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           K+ D A S  + L    S   +  IY  A+  G K     R          T +G     
Sbjct: 551 KYTDNAVSKTVNLPNSASIDDIRAIYWMAYEQGCKGVTVYRDGCKAVQVLCTGEGEKKDE 610

Query: 924 NAVPVTDPNSSTHSLGI 940
                   ++      I
Sbjct: 611 GKDDGDHKSAVRQRPDI 627


>gi|118580911|ref|YP_902161.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter
           propionicus DSM 2379]
 gi|118503621|gb|ABL00104.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelobacter propionicus DSM 2379]
          Length = 744

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/636 (27%), Positives = 293/636 (46%), Gaps = 79/636 (12%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------FYNL 345
                L +L  RY     NG+ +E     F RVA  +A  +   ++ A        FY +
Sbjct: 13  LSKNALTVLEKRYLRRGPNGTTLETAADMFRRVADTIAAADRSFDETADTAGLGDTFYRM 72

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++SF F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++
Sbjct: 73  MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFS 132

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G S G + F++V +     + QGG R+GA  A L   H D+ +F+  
Sbjct: 133 RLRPANDMVSSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIVDFIMC 192

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D+++ ++ N +  + + FM+ V ++  +TL +P                     
Sbjct: 193 KA----DQKQLNNFNISVGLTEKFMQAVERDEEYTLVNPR-------------------- 228

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    K    ++A  ++++++   +E G P I F D  N  +P   VG + S+N C
Sbjct: 229 -------NGKQHGTLNARKVFQRIVKQAWENGEPGIVFLDRLNRDNPTPQVGEIESTNPC 281

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         CNLGSINL    A    D+++L  T+R AV  LDNVI+ N + +++
Sbjct: 282 GEQPLLPY----ESCNLGSINLGKFVAEGAIDWNRLKETVRNAVHFLDNVIEANSYPLQQ 337

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                H +R IGLG+MG+   L LL IPY+SPEAV++  + M+FI+     AS EL + R
Sbjct: 338 IHDMTHGNRKIGLGVMGWADMLILLGIPYSSPEAVKLGTKVMKFINDEGRLASRELGKVR 397

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++ +F GS +D                                        MRN+    
Sbjct: 398 GSFPNFTGSTFDIKDAEP----------------------------------MRNATVTT 423

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I   S  ++P +   Y+++ M  +  V VN       K+R  + E+++  +
Sbjct: 424 IAPTGTISIIANASSGVEPLFAVSYLRTVMDKNVLVEVNPHFERIAKERGFYSESLMKRI 483

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
             H G++  I  +P D++++  TA +I P   I+  +  Q   D A S  +      + +
Sbjct: 484 AEH-GTVQGIPEVPQDVQEMFVTAHDISPNDHIQMQAAFQLHTDNAVSKTVNFPNSATIE 542

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            ++ +YR A+  G K     R  S      ST K  
Sbjct: 543 DVENVYRLAYQTGCKGVTIYRDGSRDEQVLSTAKKD 578


>gi|167648616|ref|YP_001686279.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter sp.
           K31]
 gi|167351046|gb|ABZ73781.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter
           sp. K31]
          Length = 616

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 193/679 (28%), Positives = 297/679 (43%), Gaps = 98/679 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L DRY L       E  Q  F RV+   A    +    A   Y+
Sbjct: 27  VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVSTAFA----DDADHAQRVYD 77

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM STP L N G       SCFL  V D L GI G   EN  LA   GG+G  W
Sbjct: 78  YMSKLWFMPSTPVLSNGGAERGLPISCFLNAVSDSLDGILGVWNENVWLAANGGGIGTYW 137

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  + G  G++ G+IPF++V +   +A++QG  R+G+   YL+ +H ++EEFL+
Sbjct: 138 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIFHPEIEEFLE 196

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM  V     + L SP                    
Sbjct: 197 IRKASGDFNRKSLNLHHGISITDEFMHAVRDGHKFGLRSPKT------------------ 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                     +V R++ A ALW+K+L +  +TG P++ F D  N   P+        V  
Sbjct: 239 ---------GEVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPKHQQELGLKVRQ 289

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EI L++  +           L +  A    ++      I   +R LDNV    ID
Sbjct: 290 SNLCSEIMLHTGVDHLGNDRTAVCCLSSVNAETFLEWRDHPMFIEDIMRFLDNVLQDFID 349

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                   A  +    R++GLGLMGF S L   ++P+ S  A        + +   A  A
Sbjct: 350 RAPDAAATAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 409

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ + +E+G                       A  R  +                     
Sbjct: 410 SITIGEEKGPCP-------------------DAADRGSME-------------------- 430

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ +AIAPTA+I+ ICG  S  I+P   N+Y    +SG F V N +L   L+++   
Sbjct: 431 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKVLEEKGHN 489

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            +A+   +  ++GS+ +++ +  D K ++ TAFE+D  W++E A+ R   + Q+QS+N++
Sbjct: 490 TDAVWGSILENEGSVQHLDFLSQDDKDVYKTAFELDQRWVVELAADRTPEVCQSQSVNIF 549

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L  +     L  ++ QAW  G+K+ YYLRS+S                +        +  
Sbjct: 550 LPGDVDKWDLHMLHWQAWERGVKSLYYLRSKSVQRA------------SYAGSDVALAGP 597

Query: 936 HSLGIPSSCTSDTECEVCQ 954
            +     S T   EC  CQ
Sbjct: 598 ANGFDAPSKTDYEECLACQ 616


>gi|289579197|ref|YP_003477824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter italicus Ab9]
 gi|289528910|gb|ADD03262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter italicus Ab9]
          Length = 770

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 185/659 (28%), Positives = 288/659 (43%), Gaps = 89/659 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +         E     FY
Sbjct: 1   MKITENAKKVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDRKYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------GKVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL           + DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYEIDYDKLKETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEELMEFIDKTSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM- 758
           +LA++RG +  +  S++                                     K  G+ 
Sbjct: 386 KLAEKRGTFGFYDKSIY-------------------------------------KKTGIK 408

Query: 759 -RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLW 816
            RN+    IAPT TI+ I G S  I+P +     ++ M       VN        +R  +
Sbjct: 409 IRNATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKKVAIERGFY 468

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + ++ ++    GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  + 
Sbjct: 469 SDELMREIA-QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVN 527

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNS 933
             +E + + +   Y  A+ +G K     R  S  + V    +K    +           
Sbjct: 528 FRNEATVEDVRRTYLLAYKLGCKGVTIYRDGSRESQVLNLGIKEKKEEAKPTEEQTKKE 586


>gi|42520094|ref|NP_966009.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696744|ref|ZP_00372286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698281|ref|ZP_00373199.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|99036013|ref|ZP_01315053.1| hypothetical protein Wendoof_01000107 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|225630021|ref|YP_002726812.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp.
           wRi]
 gi|42409831|gb|AAS13943.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58535205|gb|EAL59286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537070|gb|EAL60196.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592002|gb|ACN95021.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp.
           wRi]
          Length = 594

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 193/680 (28%), Positives = 300/680 (44%), Gaps = 101/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y +D      G  +L DRY +       E  Q  F R+A   +  +      A   Y+
Sbjct: 6   INYAKDSKLTDFGKAVLSDRYLIEN-----ESYQDLFARIANYYSDNKE----HAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++ A  + D FM+ V  +  W L SP                   
Sbjct: 176 LRKPTGGDPNRKALNIHHAVIVTDKFMQAVENDQEWNLISPHNN---------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV   + A  +W K+LT   ETG P+I F D  N   P+ +      + 
Sbjct: 220 -----------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIK 268

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +       ++      I   +R LDNV++   
Sbjct: 269 MSNLCSEITLTTGYDHLNKSRTAVCCLSSVNLEYYEEWKDNKLFIEDIMRFLDNVLEDFI 328

Query: 641 HTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +      +         R+IGLG+MGF S L    +P+ S  A +   +  +++   A  
Sbjct: 329 NKAPNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADI 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA+E+GA S                        D   ++   R             
Sbjct: 389 VSKKLAEEKGACS------------------------DAKEVDLMER------------- 411

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               ++ +AIAPTA+I+ I G  S  I+P   N++++  ++G F V N FL   L +++ 
Sbjct: 412 ---FTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQ 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+QS+NL
Sbjct: 469 DNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASDRTSYICQSQSVNL 528

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  GLK+ YY RS+S    +K +             TD    
Sbjct: 529 FLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD---- 584

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 585 ----------IDYDECLSCQ 594


>gi|88608409|ref|YP_506298.1| ribonucleotide-diphosphate reductase subunit alpha [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600578|gb|ABD46046.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           sennetsu str. Miyayama]
          Length = 605

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 196/683 (28%), Positives = 300/683 (43%), Gaps = 113/683 (16%)

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           + RD      G  +L DRY  +      E  Q  F RVA   +    +  K A   Y+ +
Sbjct: 21  HARDSFLTDFGKAVLKDRYLQNG-----EDYQGLFARVAKYYS----DDPKHACRLYDYM 71

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S+  FM +TP L N GT      SCFL    D L GI G   EN  LA + GG+G+ W  
Sbjct: 72  SNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWGN 131

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++ EF+DLR
Sbjct: 132 LRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIIEFIDLR 190

Query: 467 KNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           K TG D  R+  +++ A  I D FMK V ++  W L SP +                   
Sbjct: 191 KPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKD------------------- 231

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582
                     V   + A  +W ++LT   ETG P+I F D      P  +      V  S
Sbjct: 232 --------GSVIATVGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMS 283

Query: 583 NLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           NLC+EITL +      +  TA+C L S+NL          ++     +R  +  LDNV++
Sbjct: 284 NLCSEITLTTGKDHLDNHRTAICCLSSLNLEKFDE-----WEHNEQFVRDVMHFLDNVLE 338

Query: 638 INCHTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
                          S    R+IGLG+MGF S L    IP+ S  A  +  +  + I   
Sbjct: 339 DFIRKAPDCMHRARYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFKKIKHE 398

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A   S E+A ERG                          +D +  +   R          
Sbjct: 399 ADKISKEMALERGPC------------------------KDAVDCDTMER---------- 424

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                   + +A+APTA+I+ I G  S  I+P   N++ +  +SG F V N  L   L++
Sbjct: 425 ------FVHKIAVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAALLER 478

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +    + + S +  ++GS+ +++ + ++ K +  TA+E+D  W+IE A+ R  +I Q+QS
Sbjct: 479 KGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQSQS 538

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +NL+L      K+L  ++   W  GLK+ YY RS+S     K + +         PV + 
Sbjct: 539 VNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQRAYKISQEYKHKSDTPSPVGES 598

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                            +C  CQ
Sbjct: 599 ----------------DDCIACQ 605


>gi|297545362|ref|YP_003677664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843137|gb|ADH61653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 770

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/657 (26%), Positives = 279/657 (42%), Gaps = 85/657 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +         E     FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDKKYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------GKVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL           + DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYEIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ ++ MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEKLMEFIDKTSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +    I +                                  
Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGINIRNATTTTIAPTGTI---------------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDE 818
                        + I G S  I+P +     ++ M       VN        +R  + +
Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKEVAIERGFYSD 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++ ++    GS+ +I+ IP+D+K++   A +IDP W I+  +  QK +D A S  +   
Sbjct: 471 ELMREIA-QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHIKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNS 933
           +E + + +   Y  A+ +G K     R  S  + V    +K    +           
Sbjct: 530 NEATVEDVRKTYLLAYKLGCKGVTIYRDGSRESQVLNLGIKEKKEEAKPREEQTKKE 586


>gi|57239292|ref|YP_180428.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58579256|ref|YP_197468.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Welgevonden]
 gi|57161371|emb|CAH58294.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417882|emb|CAI27086.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 595

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/680 (29%), Positives = 297/680 (43%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + YERD      G  +L DRY L       E  Q  F+R++   A         A   Y+
Sbjct: 6   VDYERDNNLTVFGKAVLSDRYLLEN-----EDYQQLFVRISEYYADNSE----HAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 117 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++    + D FMK V  +A W L SP +                 
Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQ---------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  +W K+LT   ETG P+I F D  N   P+ +      + 
Sbjct: 220 -----------SVIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
            SNLCTEITL +  +           L +        +      I   +R LDNV    I
Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYYEQWKDNELFIEDVMRFLDNVLTDFI 328

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I  HA +
Sbjct: 329 EKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATMWNKKIFSHIKKHADA 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  +A E+G                                        D     V   
Sbjct: 389 ASYRIAIEKGPCP-------------------------------------DAKDAGVME- 410

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R  N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   L  +  
Sbjct: 411 --RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLILKGE 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +S R K+I QAQS+N+
Sbjct: 469 NNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQAQSVNI 528

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  GLK+ YY RS+S    +K +   ++  +           
Sbjct: 529 FLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADKVSRGALEKSIEQCKQITN--- 585

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 586 ----------FDYDECLSCQ 595


>gi|270307717|ref|YP_003329775.1| ribonucleotide reductase [Dehalococcoides sp. VS]
 gi|270153609|gb|ACZ61447.1| ribonucleotide reductase [Dehalococcoides sp. VS]
          Length = 761

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 183/660 (27%), Positives = 289/660 (43%), Gaps = 85/660 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E           R  EFY
Sbjct: 20  LKLTDNAMCVLERRYLKKDKQGKPTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFY 79

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           NL++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 80  NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFI 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
               +  D      + N +  I D FM+ V   A + L +P                   
Sbjct: 200 ----HAKDKAGVLTNFNLSVAITDKFMQAVKDGADYDLLNPH------------------ 237

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 238 ---------NGEVVSCLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL          +  DY KL+  I++AVR LDNVID+N
Sbjct: 289 PCGEQPLLPY----ESCNLGSINLSRMVTVSGGKSTVDYKKLSRVIKSAVRFLDNVIDVN 344

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + + ++     R IGLG+MGF   L  L IPY S  ++++A+E M F++  A   S 
Sbjct: 345 KFPLPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNDEAHKFSS 404

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L    G+  +   +PD+ K++  TA +I P W +   +  QK  D A S  +   
Sbjct: 490 ELIKSLAE--GAHLDEADVPDEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             +G+  +  +Y+ A    LK     R  S      ST K  +       V +PN     
Sbjct: 548 RDAGECDVADVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAAVVNPNLMPRK 607


>gi|297582632|ref|YP_003698412.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           selenitireducens MLS10]
 gi|297141089|gb|ADH97846.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           selenitireducens MLS10]
          Length = 735

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 235/755 (31%), Positives = 346/755 (45%), Gaps = 114/755 (15%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           EP++    A    E L      T +    +A        +P      +  G+    L E 
Sbjct: 33  EPHWTYKAAALFAEDLYESAAKTRHLNTGEAYED-----FPGLIFEGVRLGLYDNRLTEY 87

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALK 331
               +L   A+ L  ++D  F Y GL +L DRY     +G   E+PQ  F+ +A+ L + 
Sbjct: 88  YSPAELDEAASMLNPDQDRLFTYPGLFLLADRYLTRTTDGELFELPQERFLVIALVLMMH 147

Query: 332 E--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
           E   ++     E Y  +S  +   +TPTL N+G  H QLSSCF+ TV D L GI+    +
Sbjct: 148 EPQEKRLALVREAYWAMSHLYMTVATPTLANAGKSHGQLSSCFIDTVDDSLDGIYLNNWD 207

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A L+K  GG+G  +  VR LG+ I G  G S GVIP+++  N+TAV+V+Q G+R+GA+ 
Sbjct: 208 IARLSKDGGGIGVYYGKVRALGSDIKGFKGNSSGVIPWIRQLNNTAVSVDQLGQRQGAIA 267

Query: 450 AYLETWHIDVEE-FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-------AGWTL 501
            YL+ +H D+   FLDL+ N GD+RR+ HD+ T   +PDLFMK++ +          W +
Sbjct: 268 VYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVCLPDLFMKKLEETDENGRSIGEWHV 327

Query: 502 FSPDEVSDLH-----------------DLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           F P EV  +                  +     F   YE    +A    +       A+ 
Sbjct: 328 FCPHEVKQIMGWKDKDGNPLGLEDFFDEADRPYFTEKYE----EAVHHPLLPRETYRAMD 383

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-----VHSSNLCTEITLNSSSE---- 595
           +  +M+    ETG P+  ++D  N ++P +  G      ++SSNLCTEI  N S      
Sbjct: 384 IMARMMVSQLETGTPYFFYRDEVNRQNPNKIAGEPGRTTIYSSNLCTEIAQNMSPSVITK 443

Query: 596 ----------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
                           +  VCNL S+NL         D D L   I   +R+LDNVID+N
Sbjct: 444 EYETEEGDQVIVRKPGDFVVCNLSSVNLGNA-----GDPDILKRLIPIQMRMLDNVIDLN 498

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +++A+++N  +RA+GLG  G+   L    I + S EAV+ AD   E I++ AI AS 
Sbjct: 499 QLPVQQARRTNSRYRAVGLGTFGWHHYLAKNQIHWESDEAVQEADRLYETIAYLAIEASA 558

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA+E+GAY +FKGS W+ G                      +   W  LKK V   G+R
Sbjct: 559 ALAREKGAYPAFKGSEWESGR--------------YFERRGYTSANWQTLKKTVSESGVR 604

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N   MA+AP ++ A I G +  IDP Y   + +   +  F V                  
Sbjct: 605 NGWMMAVAPNSSTAKIGGSTDGIDPLYAVEFAEEKKNFKFLVTAP--------------- 649

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                            +  +    +  T   +D  W I   + RQK IDQ  S NLY+ 
Sbjct: 650 ----------------ELDHNTYPYYQKTRHTLDQTWSIRQNAARQKHIDQGVSFNLYVH 693

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
                K+L  ++ +AW  GLKTTYY+RS S   +E
Sbjct: 694 HAIRAKELLSLHLEAWKQGLKTTYYIRSTSQEEIE 728


>gi|303325479|ref|ZP_07355922.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. 3_1_syn3]
 gi|302863395|gb|EFL86326.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. 3_1_syn3]
          Length = 774

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/664 (25%), Positives = 290/664 (43%), Gaps = 91/664 (13%)

Query: 301 LYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHFM 352
           L  RY     +G   E P+  F RVA  +A +E + E+ + E       FY+L++ + F+
Sbjct: 34  LQKRYLRKSLDGKLSETPRDLFWRVASAIAAEEGKYERSSCEPEALARDFYDLMTGWKFL 93

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   +
Sbjct: 94  PNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKES 153

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + FL++ N     + QGG R+GA    L   H D+ +F+  ++  G+ 
Sbjct: 154 RVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILDFIRAKEKEGE- 212

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               ++ N +  + + FM+ V ++  + L +P+                           
Sbjct: 213 ---FNNFNLSVGLTEAFMQAVEKDEHYDLRAPNT-------------------------- 243

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V  ++ A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L  
Sbjct: 244 -GEVVDRLRARDVFDLLVKKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLLP 302

Query: 593 SSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNVIDINCHT 642
                  CNLGSINL   +     D          + +L   +  +VR LDNVID +   
Sbjct: 303 F----EACNLGSINLACFYLPGHNDDADPARDGIDWAELRRVVHLSVRFLDNVIDASLFP 358

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +  ++   +R IGLG+MGF   L  L +PY S E + +A+  M F+      AS ELA
Sbjct: 359 LPRIAETVRKNRKIGLGVMGFADLLFELGVPYNSREGIALAERVMGFVQEEGHKASAELA 418

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG + ++  S +                                   + K    RN+ 
Sbjct: 419 KERGPFPAYPASTYA----------------------------------KAKKGPYRNAT 444

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  ++P +   + ++ + G+    VN +    L    L    ++
Sbjct: 445 VTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALAATGLAGHELM 504

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
             +    GSI +++ +P  L+K+  TA +I+P+W +   +  Q+  D A S  + L    
Sbjct: 505 DSVVA-KGSIQDMDFLPAKLRKVFVTAMDIEPVWHLRMQAAFQRHTDNAVSKTVNLSNTA 563

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + + +  IY  A+  G K     R    +    +T +G   K++  P           G 
Sbjct: 564 TEQDIFDIYWLAYKEGCKGVTVYRDGCKSIQVLATGEG-QKKMDGEPAAPSGRVAVQTGR 622

Query: 941 PSSC 944
             + 
Sbjct: 623 AQAA 626


>gi|58617310|ref|YP_196509.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           ruminantium str. Gardel]
 gi|58416922|emb|CAI28035.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia
           ruminantium str. Gardel]
          Length = 595

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/680 (29%), Positives = 297/680 (43%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + YERD      G  +L DRY L       E  Q  F+R++   A         A   Y+
Sbjct: 6   VDYERDNNLTVFGKAVLSDRYLLEN-----EDYQQLFVRISEYYADNSE----HAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 117 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++    + D FMK V  +A W L SP +                 
Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQ---------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  +W K+LT   ETG P+I F D  N   P+ +      + 
Sbjct: 220 -----------SVIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
            SNLCTEITL +  +           L +        +      I   +R LDNV    I
Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYYEHWKDNELFIEDVMRFLDNVLTDFI 328

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I  HA +
Sbjct: 329 EKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIKKHADA 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  +A E+G                                        D     V   
Sbjct: 389 ASYRIAIEKGPCP-------------------------------------DAKDAGVME- 410

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             R  N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   L  +  
Sbjct: 411 --RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLILKGE 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + D  K +  TA+E+D  W+IE +S R K+I QAQS+N+
Sbjct: 469 NNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQAQSVNI 528

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  GLK+ YY RS+S    +K +   ++  +           
Sbjct: 529 FLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADKVSRGALEKSIEQCKQITN--- 585

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 586 ----------FDYDECLSCQ 595


>gi|220905096|ref|YP_002480408.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869395|gb|ACL49730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 781

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/654 (25%), Positives = 289/654 (44%), Gaps = 91/654 (13%)

Query: 301 LYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHFM 352
           L  RY     +G  IE P+  F RVA  +A +E           + A +FY+L++S+ F+
Sbjct: 21  LQKRYLRKNLDGKIIEAPRDLFWRVAAAIAAQEENYKNSSRTPNQLARDFYDLMTSWKFL 80

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++ +R   +
Sbjct: 81  PNSPTLMNAGTELGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKDS 140

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  ++  G+ 
Sbjct: 141 RVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEKEGE- 199

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
               ++ N +  + + FM+ V  +  + L SP+                           
Sbjct: 200 ---FNNFNLSVGLTESFMQAVENDEQYDLVSPN--------------------------- 229

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V +++ A  ++  ++   +++G P I F D  N  +P    G + S+N C E  L  
Sbjct: 230 NGEVMKRLPARDVFDLLVRKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLLP 289

Query: 593 SSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTI 643
                  CNLGSINL                  D+D+L   +  +VR LDNVID +   +
Sbjct: 290 F----EACNLGSINLSCFHVPGHENSADPAAGIDWDELRRVVHLSVRFLDNVIDASRFPL 345

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++  ++   +R IGLG+MGF   L  L +PY S + +++ +  M F+      AS ELA 
Sbjct: 346 DRIGETVRKNRKIGLGVMGFADLLFQLGVPYDSQQGLDLGERIMAFVQGEGHRASAELAL 405

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSN 762
           ERG + ++  S++ +                                   K +G  RN+ 
Sbjct: 406 ERGPFPAYGSSVFAR-----------------------------------KKLGPYRNAT 430

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  ++P +   + ++ + G+    +N      L+   L+   ++
Sbjct: 431 VTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEINPHFEAALESGGLFSHELM 490

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
             +    GSI +++ +P  L+K   TA +I P W +   +  Q+  D A S  + L +  
Sbjct: 491 DAVVA-KGSIQDMDYLPAPLRKTFVTAMDIAPQWHLRMQAAFQRHTDNAVSKTVNLSNSA 549

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           + + +  IY  A+  G K     R    +    +T +G     +        S+
Sbjct: 550 TEQDIREIYWLAYQEGCKGVTVYRDGCKSIQVLATGEGQKKMDSGSAEVAGGSA 603


>gi|189485391|ref|YP_001956332.1| cobalamin-dependent ribonucleotide reductase alpha subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287350|dbj|BAG13871.1| cobalamin-dependent ribonucleotide reductase alpha subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 767

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 175/676 (25%), Positives = 287/676 (42%), Gaps = 82/676 (12%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA---- 339
           L  E     E   L +L  RY     +G+ IE P+  F RVA  +A  +   ++      
Sbjct: 9   LISENKVNLENNALTVLKKRYLKKDKDGNVIESPEDLFYRVAENIAQADKIYDEDTDITI 68

Query: 340 --VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
              EFY  +SS  F+ ++PTL N+G    QLS+CF+  + D +  IF  L+  A++ K  
Sbjct: 69  LIREFYLTMSSCDFLPNSPTLMNAGRHLQQLSACFVLPIDDSMDSIFETLKNTALIHKSG 128

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG G  ++ +R     +  T+G S G I F++V N    A+ QGG R+GA    L   H 
Sbjct: 129 GGTGFSFSRLRPKKDVVRTTSGISSGPISFMQVFNAATEAIKQGGTRRGANMGMLRIDHP 188

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +F+  +    DD     +++ A  I   FM  + +   + L++P             
Sbjct: 189 DILDFIICK--DKDDSLNNFNISVA--ITKKFMDALEKGEYYNLYNPR------------ 232

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                             +  +++A  ++ K++   ++ G P I F D  N ++     G
Sbjct: 233 ---------------NGVIIGRLNANEVFGKIVDQAWKNGEPGIVFVDRMNHKNTTPSAG 277

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + S+N C E  L         CNLGSINL     NN  +++KL  T++TAV  LDNVID
Sbjct: 278 SIESTNPCGEQPLLPY----ESCNLGSINLGHFVKNNDVNWEKLEKTVKTAVHFLDNVID 333

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           ++ + I+K  +   ++R IGLG+MG+   L  L IPY S +++ +A+E M FI   +  A
Sbjct: 334 VSNYPIQKIGEVTRSNRKIGLGIMGWADLLLYLGIPYGSNDSLALAEELMGFIHSKSRKA 393

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA +RG++ +FK S++ +G                       R           TIG
Sbjct: 394 SEELAFKRGSFPNFKKSIYAKGSPV--------------------RNATTTTIAPTGTIG 433

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDL 815
           M                I   S  I+P +  +Y +     + +   VN +     K+   
Sbjct: 434 M----------------IASASSGIEPIFALVYKRMQCLDNEEMYEVNPYFEKLAKENGF 477

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
           +   +I  +    GSI   + IP+ +KKI  T+ +I P   I+  +  QK+ D A S  +
Sbjct: 478 YSPELIDKISE-KGSIRGFKEIPEKIKKIFVTSHDIAPEEHIKMQAAFQKFTDNAVSKTV 536

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
                 + + +  +Y  ++ MG K     R  S      +     +             +
Sbjct: 537 NFPNSATKEDVKKVYILSYKMGCKGVTVYRDGSRNVQVLNLANKKEEYSQGALHEKKPRT 596

Query: 935 THSLGIPSSCTSDTEC 950
                   +    T C
Sbjct: 597 RPKKTTGLTFLMHTGC 612


>gi|154498792|ref|ZP_02037170.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC
           29799]
 gi|150272182|gb|EDM99386.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC
           29799]
          Length = 784

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 183/672 (27%), Positives = 293/672 (43%), Gaps = 86/672 (12%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLL 346
                 +L  RY +    G   E     F RVA  +A  +   + +A        FYN++
Sbjct: 4   SENARAVLEKRYLIRDEKGEPTETVDDLFHRVANAIAAADAAFDPKADVAATASRFYNMM 63

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  ++ 
Sbjct: 64  TGLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAIKNAALIHKSGGGTGFSFSR 123

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ +F+  +
Sbjct: 124 LRPRGSTVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILDFITCK 183

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
               +D +   + N +  I + FM+ V     + L  P                      
Sbjct: 184 ----NDTKEITNFNISVGITEKFMQAVENGGSYELVDPAT-------------------- 219

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   KV   ++A  ++ K+++  ++TG P I F D  N  +P    G + S+N C 
Sbjct: 220 -------HKVTGTLNAREVFEKIVSSAWQTGEPGIIFLDRLNRDNPCPQQGEIESTNPCG 272

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           E  L         CNLGSINL+ H          D DKL +TIRTAV  LDNVI++N + 
Sbjct: 273 EQPLLPY----EACNLGSINLVTHLKEEDGRWVLDKDKLTATIRTAVHFLDNVIEVNKYP 328

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +      + R IGLG+MGF   L  + IPY S + V +A E ME ++      S  LA
Sbjct: 329 LPEIDAMTRSTRKIGLGVMGFADMLLYMGIPYNSDQGVAMAREVMELVNTIGHEESQALA 388

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           Q RGA+  F  S +  G                                      +RN+ 
Sbjct: 389 QVRGAFPLFDESTYRNGKP------------------------------------IRNAT 412

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I GVS  ++P +   Y+++ M        N  L N L  R L+ E ++
Sbjct: 413 VTTIAPTGTLSIIAGVSSGVEPVFAYAYIRNVMDNTHLIETNQILKNVLLSRGLYSEELM 472

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
             +    GS+ +++ IP+D+K++   A ++ P+W ++  +  Q + D A S  +      
Sbjct: 473 RKIVE-QGSLAHVDGIPEDIKRVFVCAHDVSPIWHVKMQAAFQAYTDNAVSKTVNFPNSA 531

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + +++  +Y  A+ +G K T   R  S      +  K  DGK +     D         +
Sbjct: 532 TKEEVAEVYTLAYKLGCKGTTIYRDGSRDEQVLNIGKVNDGK-DKAEKKDATGDPMVDAV 590

Query: 941 PSSCTSDTECEV 952
             +      C +
Sbjct: 591 LEASCDGAACVM 602


>gi|254796776|ref|YP_003081612.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           risticii str. Illinois]
 gi|254589966|gb|ACT69328.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia
           risticii str. Illinois]
          Length = 608

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/700 (28%), Positives = 305/700 (43%), Gaps = 115/700 (16%)

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
           H    D D   +     + RD      G  +L DRY  +      E  Q  F RVA   +
Sbjct: 9   HWKHHDHDEKKIRTL--HARDSFLTDFGKAVLKDRYLQNG-----EDYQGLFARVAQYYS 61

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
               +  + A   Y+ +S+  FM +TP L N GT      SCFL    D L GI G   E
Sbjct: 62  ----DDPEHACRLYDYMSNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNE 117

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           N  LA + GG+G+ W  +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+  
Sbjct: 118 NVWLASHGGGVGSYWGNLRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSA 176

Query: 450 AYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            YL   H ++ EF+DLRK TG D  R+  +++ A  I D FMK V ++  W L SP +  
Sbjct: 177 VYLPVNHPEIVEFIDLRKPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKD-- 234

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                      V   + A  +W ++LT   ETG P+I F D   
Sbjct: 235 -------------------------GSVIATVGARGIWIRILTARLETGEPYILFIDTVQ 269

Query: 569 IRSPQQHVG---VVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDK 620
              P  +      V  SNLC+EITL +      +  TA+C L S+NL          ++ 
Sbjct: 270 KLRPDVYKTLGLEVKMSNLCSEITLTTGKDHLDNHRTAICCLSSLNLEKFDE-----WEH 324

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYAS 676
               IR  +  LDNV++               S    R+IGLG+MGF S L    IP+ S
Sbjct: 325 DEQFIRDVMHFLDNVLEDFIRKAPDCMHRARYSAMRERSIGLGVMGFHSFLQSRSIPFES 384

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
             A  +  +  + I   A   S E+A ERG                          +D +
Sbjct: 385 AIAKSVNLKIFKKIKHEADKISKEMALERGPC------------------------KDAV 420

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795
             +   R                  + MAIAPTA+I+ I G  S  I+P   N++ +  +
Sbjct: 421 DCDMMER----------------FVHKMAIAPTASISIIAGNTSPGIEPYAANVFTQKTL 464

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           SG F V N  L   L+++    + + S +  ++GS+ +++ + ++ K +  TA+E+D  W
Sbjct: 465 SGSFIVKNKHLAALLERKGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRW 524

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +IE A+ R  +I Q+QS+NL+L      K+L  ++   W  GLK+ YY RS+S     K 
Sbjct: 525 IIELAADRTPYICQSQSVNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQRTYKI 584

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + +         PV +P                 +C  CQ
Sbjct: 585 SQEYKHKSDTPSPVGEP----------------DDCIACQ 608


>gi|34580443|ref|ZP_00141923.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           sibirica 246]
 gi|28261828|gb|EAA25332.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           sibirica 246]
          Length = 573

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 192/650 (29%), Positives = 288/650 (44%), Gaps = 90/650 (13%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  Q  F RV+   A      ++ A + Y  +S   FM +TP L N GT      SCFL 
Sbjct: 4   EDFQDLFARVSSYYAEN----KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLN 59

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              D L  I     EN  LA   GG+G+ W  VR +   I    G S G+IPF+KV +  
Sbjct: 60  ETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSM 118

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV 493
            +A++QG  R+G+   YL   H ++EEF+D+R+ TG D  R+  +++    I D FMK V
Sbjct: 119 TLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAV 178

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             N  + L SP                              KV  K+ A  LW K+LT  
Sbjct: 179 ENNTDFDLVSPAT---------------------------KKVVNKVRARDLWVKLLTTR 211

Query: 554 FETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
            ETG P++ F D  N   P+ H      V  SNLC+EITL +  +           L + 
Sbjct: 212 IETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSL 271

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSA 666
                 ++      I + +  LDNV++   +           S    R++GLG+MGF S 
Sbjct: 272 NLEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSF 331

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L +  +P  S  A     +  E+IS     AS+E+ +E+GA                D++
Sbjct: 332 LQMKKVPIESVMAKVWNKKIFEYISDETDKASIEIGKEKGACP--------------DAL 377

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
              +  R                           SN  AIAPTA+I+ I G  S  I+P 
Sbjct: 378 DAGSNER--------------------------FSNKTAIAPTASISVIAGNASPGIEPF 411

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             N +V+  ++G F V N  L   L+++   ++ + S +  H+GS+ ++  + ++ K++ 
Sbjct: 412 AANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVF 471

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA+EID  WLIE AS R  +I QAQSLN++L    S K L+ I+ +AW  G+K+ YY R
Sbjct: 472 KTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCR 531

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           S S    +K +   +      +   +   +           +  EC  CQ
Sbjct: 532 STSIQRADKVSHDVLKADFKDLEEQNDKLAEAG--------NHEECLACQ 573


>gi|18313863|ref|NP_560530.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2]
 gi|18161428|gb|AAL64712.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2]
          Length = 849

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 193/872 (22%), Positives = 347/872 (39%), Gaps = 98/872 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++  DG    F+  +L + V  A  GL       V      ++   +   +L   +   
Sbjct: 3   TVIKLDGRREPFSHDKLRLSVIRA--GLDVC--VEVNGAVEVSVNRDVGTWELADMVQLE 58

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                  +P  A V    LL ++ +E     + K +              F   IE G+ 
Sbjct: 59  LLRRAIDKPELALVAKAHLLGRIYKETFGKDFLKTKTGYRERAIAR----FKSLIEAGLL 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMR 323
                E++  F+        + + D +  Y  L++  +  Y L     R+ E P     R
Sbjct: 115 KPEAIEALSAFE-------PRPDFDRSLSYNALRLFTNGNYALRDQNFRLAETPSMAAWR 167

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VA  +A +     +RA  +Y+ ++    + ++P  FN+ TR    +SCF   V D L  I
Sbjct: 168 VATAVARE----LERAKLYYDYITQLKIVPASPFWFNAWTRKEMFASCFTLEVEDCLSSI 223

Query: 384 --------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
                   + AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+++ +   
Sbjct: 224 THPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMRLFDANV 283

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR--- 492
             + QGGKR+GA    L  WH D+ +F+  +     D     + N + ++ D FM++   
Sbjct: 284 DVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDA-HLQNFNISVFVDDTFMEKALG 342

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  ++ + L +P    D       EF     +  ++    +  V+ ++ A  L+ ++   
Sbjct: 343 VDGDSKYKLINPRVFYDKTGKKAVEF----VDVHKETQVPKEAVWGEVDARQLFGEIAHG 398

Query: 553 LFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
            +++G P + FK   N  +P           +   +  S N C E   N       VCNL
Sbjct: 399 AWDSGDPGLIFKSNLNASNPLLGEEIEISNYRFTYIWRSVNPCAETVQNPF----EVCNL 454

Query: 603 GSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             INL+     N             D++ LA   R   R LD+ I+ +   I+   + N 
Sbjct: 455 THINLVKFVKENCAGGSFEEKLGCIDWEGLAQAARVGTRYLDDAIERSRTGIKIIDEMNS 514

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+  S ELA+ERG +  F
Sbjct: 515 ATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDESAELARERGPFKFF 574

Query: 712 KGSLWDQGVFPI----DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI----------- 756
           + S++ +G  P+    D +    E    +   R  +   D L+                 
Sbjct: 575 EKSVYARGEIPVLKFQDFVWRRWERIKRVY-PRELQEAGDRLRDITMRTREWLRPYLERL 633

Query: 757 ------GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                 G+RNS  ++IAPT   + + G +  ++P +   ++++   G         +  L
Sbjct: 634 ADKVRGGVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLIEYYEPGIEWL 693

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K R  W   +   +    G + +   +P+  K + ATA EI  +W +   +  Q+W+DQ 
Sbjct: 694 KARGYWTPQVR-KVVEETGMLRDAP-VPEAAKHLLATAMEIGWLWHVLMQASAQQWVDQG 751

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTLKGVD 920
            S  + +      + + + +  AW +G+K     R +S +            K  L    
Sbjct: 752 ISKTINMPANAPQEDVYWAFAFAWAVGVKGITVYRDKSKSVQVIYTGLKQDIKKRLAETK 811

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950
             +  + +              +     D  C
Sbjct: 812 IVVRPLALETSIEEVAEQAKLKALEEGKDPYC 843


>gi|117530177|ref|YP_851020.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|86990303|dbj|BAE79255.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|117165789|dbj|BAF36097.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis
           phage Ma-LMM01]
 gi|124270943|dbj|BAF45773.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-LMM02]
 gi|124270945|dbj|BAF45774.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-LMM03]
 gi|124270947|dbj|BAF45775.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage
           Ma-HPM05]
          Length = 742

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 220/787 (27%), Positives = 359/787 (45%), Gaps = 86/787 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++  DG+   +++ R   ++  AC GL +V    +     +     ++  +++  LI
Sbjct: 2   QINVIHTDGSRTPYDANRAIEVINWACEGL-EVDPDKLSRRLSRRFNADITTEEIQNGLI 60

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  L + + P++ KV+ R  +   RR+V         KA    +   YP  F     E
Sbjct: 61  RTAAELADLQYPDWLKVSGRLRMWDWRRKV---------KARRGYLYGNYPVAFEYLRSE 111

Query: 263 GVKARLLHES----MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
           G+    L +         D+      +  ERD  F+  G  +L  RY L       E+ Q
Sbjct: 112 GLYEGDLIKKFLDTYSADDIAEAGTWIDPERDMRFDISGADLLTARYLLEG-----ELLQ 166

Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             ++  A+ L++ E   E+   A + Y+LLS      +TP + N       LSSC +  +
Sbjct: 167 EMWLTQALLLSMLEPAHERMTFAHKAYDLLSLGKISLATPLMSNLRQADGSLSSCHIIDI 226

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D    IF  + + A ++   GG+G   + VR  G+ I    G S GV P++K+ N T V
Sbjct: 227 DDSRESIFDNISQLAAMSANGGGVGVRISKVRARGSRIRKKKGASGGVCPWIKIINATIV 286

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           A NQ G R GA    ++ WH D+ E++DLR + G +  +  D+     I D FM+RV  +
Sbjct: 287 ATNQRGVRAGACTVGIDVWHADLLEYMDLRGDAGSEHTKARDILLQFIISDEFMRRVILD 346

Query: 497 AGWTLFSPDEVSDLH-----DLYGKEFEIAYENYERQAD--RGEIKVFRKISAVALWRKM 549
             W L  P E+ ++      D+YG EF  AY   E   +     + V +K+SA A+W+KM
Sbjct: 347 KDWYLVCPTEIKNVFGYQLADMYGDEFTNAYHVIEAYINSSAPPLDVVKKVSAKAIWKKM 406

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           L +L ETG P++ FKD  N  +P +H G++   NLC E     +S  +  C L S+ L  
Sbjct: 407 LMLLLETGTPYVAFKDRINALNPNKHEGIIGGVNLCVESYSLFNSSYSHCCMLLSLVLPR 466

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +   D        RTAVR+LD   D+      +A+   + +R IG+G+MG    L +
Sbjct: 467 IADDEMAD------VSRTAVRLLDAACDLTTSPTPEARAHVNRYRTIGVGVMGLADWLAI 520

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
            H+ Y     + + ++  E I F+   ASVELA+ERGAY +F GS W +G+       L 
Sbjct: 521 RHLRYQD---LNLIEKLFEDICFYTTQASVELAEERGAYPAFPGSEWSKGLI------LG 571

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++ +  N T    W  L +R+   G+RNS+ +A AP ++ + + G + S  P +  L
Sbjct: 572 GRDKEWVRDNSTDPERWYALMERIIVSGIRNSHILATAPNSSTSLVQGATASFLPVFSRL 631

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
            +  N +G  T+V  ++                                      +  + 
Sbjct: 632 TIDKNGAGINTIVPLYIKEAFH--------------------------------FYQESR 659

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL--YLDE--------PSGKKLDFIYRQAWLMGLKT 899
              P  ++ +A+  QKW+D   S  L    +E         + K L+ +Y QAW  GLKT
Sbjct: 660 YTHPSVVVSAAATIQKWVDTGLSTELLFNFNEHAYGFDYVATAKDLNDVYMQAWREGLKT 719

Query: 900 TYYLRSR 906
            YY+RS 
Sbjct: 720 VYYVRSM 726


>gi|313672578|ref|YP_004050689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939334|gb|ADR18526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 762

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/659 (25%), Positives = 284/659 (43%), Gaps = 82/659 (12%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYN 344
                 + +L  RY      G  +E P+  F RVA+ +A  +    K A       +FY+
Sbjct: 13  ELSNNAITVLKKRYLKRDSEGKLLETPKEMFQRVAINIAQADLNYNKDADIAETARKFYD 72

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++    F+ ++PTL N+G    QLS+CF+  V D L  IF A++  A++ K  GG G  +
Sbjct: 73  IMVDLKFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSF 132

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G S G I F+ V +     + QGG R+GA    L   H D+ +F+ 
Sbjct: 133 SRLRPKDDVVKTTKGVSSGPISFISVFDAATEVIKQGGTRRGANMGILRVDHPDIMDFIY 192

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K    D+ +  + N +  + + FMK V +   + L +P +                  
Sbjct: 193 AKK----DKTKLTNFNLSVGLTEEFMKAVEEGKDFELINPRD------------------ 230

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     KV  K++A  ++ +M+ + +E G P I F D  N  +P    G + S+N 
Sbjct: 231 ---------KKVVGKLNARKVFDEMVQLAWEGGDPGIIFLDRINKANPTPKEGEIESTNP 281

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL     + + D+++L   I T+V  LDNVID+N + I 
Sbjct: 282 CGEQPLLPY----ESCNLGSINLAKFIKDKKIDWEELKYVIHTSVHFLDNVIDMNKYPIP 337

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + +     +R IGLGLMG+  AL LL IPY S E +E+A++ M+F +  +  AS +LA+ 
Sbjct: 338 EIEYMTKKNRKIGLGLMGWADALALLEIPYNSYEGIELAEKVMKFFNDESKIASSKLAEV 397

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG++ +F+ S++                     +   +                      
Sbjct: 398 RGSFPNFEDSIYP--------------EMGFKYLRNATTTTIAPTGTI------------ 431

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISD 823
                   + I   S  ++P +   + ++ M       VN +    +K+  ++ E ++  
Sbjct: 432 --------SIIGNASSGVEPYFAIAFYRNVMDNTKLVEVNPYFKQAVKEYGIYSEELMEK 483

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
           +    G + +I  +P+ LKKI  TA EI P+W ++  +  QK+ D A S  +    + + 
Sbjct: 484 IAE-KGILKDIPEVPEKLKKIFVTAHEISPIWHVKMQAAFQKYTDNAVSKTVNFSHDATV 542

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSV---EKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           + +  +Y  A+ +G K     R            +  +    ++N              
Sbjct: 543 EDVKNVYLLAYKLGCKGITIYRDGCREDQVINIGTKTEKEKEQMNVEYKATFTPRPRPK 601


>gi|307266246|ref|ZP_07547787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918696|gb|EFN48929.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 770

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 179/667 (26%), Positives = 283/667 (42%), Gaps = 85/667 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +         E     FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL             DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +    I +                                  
Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
                        + I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++ ++    GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  +   
Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           +E + + +   Y  A+ +G K     R  S  + V    +K    +   +     N    
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRESQVLNLGIKEKKVETKPIEEQTKNEPLR 589

Query: 937 SLGIPSS 943
               P  
Sbjct: 590 PRPRPPV 596


>gi|294496479|ref|YP_003542972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalophilus mahii DSM 5219]
 gi|292667478|gb|ADE37327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanohalophilus mahii DSM 5219]
          Length = 596

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/637 (26%), Positives = 280/637 (43%), Gaps = 77/637 (12%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLLS 347
               G  +L  RY L    G   E P   F RVA  +A  ++       +    FY +++
Sbjct: 16  LSANGKTLLEKRYLLRDAEGKVAEEPGELFARVAKTIARVDSRYGYDVEKTEDDFYQVMA 75

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              F+ ++PTL N+GT   QLS+CF+  V D L  IF +LQ+ +++ +  GG G  ++ +
Sbjct: 76  DLEFLPNSPTLMNAGTELGQLSACFVLPVEDSLKSIFKSLQDMSLIHQSGGGTGFSFSNL 135

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  +  TNG + G + F+ + +     + QGG+R+GA    L   H D+ EF+  + 
Sbjct: 136 RPKGDIVGSTNGVASGPLSFMTIFDKATDVIKQGGRRRGANMGVLRVDHPDIIEFIRAK- 194

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              +D     + N +  + D FM+ V+Q+  + L +P                       
Sbjct: 195 ---EDEELLRNFNLSVGVTDEFMEAVSQDRDYALINPRT--------------------- 230

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  K+ +++ A  ++ +++T    TG P + F D  N R P   +G + S+N C E
Sbjct: 231 ------GKIEKRLKAKDVFDRIVTCACRTGDPGLLFLDEINRRHPLSTIGTIESTNPCGE 284

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           + L         CNLGSINL         D++KL  T+ T V  LDNVID N + + +  
Sbjct: 285 VPLLPY----ESCNLGSINLAQMVKEGAIDWEKLKQTVHTGVHFLDNVIDANKYPLPQIG 340

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +    +R IGLG+MGF + L  L IPY   E +  A++ M+F    ++  SVEL ++RG+
Sbjct: 341 QRTKQNRKIGLGVMGFAAMLARLGIPYDCREGIATAEKVMKFTQDESVQKSVELGEQRGS 400

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           + +F  S               A  RD  A                    MRN+    +A
Sbjct: 401 FPNFHRS---------------ALARDYPA--------------------MRNATVNTVA 425

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +++ I   +  I+P +   Y ++ M    T ++       ++   +   ++ ++   
Sbjct: 426 PTGSLSIIANTTSGIEPMFALTYRRNVMGTRLTEIDPVFEEIARKHGFYSSQLMEEIAGT 485

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            GS+     IP+  ++I ATA EI P W +   +  QK +D A +  + L  E + +   
Sbjct: 486 -GSLQTSPNIPEQTRRIFATALEIQPRWHVRMQAAFQKHVDNAVAKTVNLPHEATVEDFR 544

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            +Y  A+ +  K     R  S            D K 
Sbjct: 545 EVYMLAYRLKCKGIAAYRYGSKAEQVLEIGNAGDKKA 581


>gi|300870142|ref|YP_003785013.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira
           pilosicoli 95/1000]
 gi|300687841|gb|ADK30512.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 771

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 206/811 (25%), Positives = 357/811 (44%), Gaps = 97/811 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L+ ++  A  G +  +   +L      + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLKKVINWATDGKEGFT-NALLEGLNIKINDRMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
              I    P+Y  +  +  L K+ +E          K            +  + ++  V 
Sbjct: 71  VNKISPLYPSYDTIAEKLYLMKIYKETC--------KLKKTGSYPHIKTFLKKGVKHKVY 122

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            + +     D +L  + + +  +RD  F Y GL I Y +Y  +I   ++E+PQ  +M  A
Sbjct: 123 DKNIVSLFSDKELDKINSMIVPDRDLLFTYKGLAIFYRKYCKNIGSKKLELPQITYMVAA 182

Query: 326 MGLALKETE--------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           M     +                + K     Y++LS      +TP + NS +  PQL+SC
Sbjct: 183 MFSFYDDFYKGANKDIVEKTKTDRLKYIKRTYDMLSKHEVTFATPRIANSMSIRPQLASC 242

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G +PF+K  
Sbjct: 243 ILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQSNRGRSDGPVPFIKRT 302

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I ++  +
Sbjct: 303 EQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNILRE 362

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++   TLF P E   L++ +G+ F +AY  YE ++   +    ++I A  L  ++L 
Sbjct: 363 RVNKDEYITLFDPKETPLLNEEFGENFNVAYIYYESKSSIRK----KRIKAKDLLFQILK 418

Query: 552 MLFETGHPWITFKDPCNIRSP----------------------QQHVGVVHSSNLCTEIT 589
           +  ETG+ ++TF D  N ++                             V + +   EI 
Sbjct: 419 VRQETGNLYLTFVDNINEQNMVNKFVGASNLCQEIVIPSFPSKLIEEKYVVNEDGSYEIV 478

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               S E  +CNL S+NL    +   F  +K  S   T +R  DN+ID   + +++ + +
Sbjct: 479 QRKKSGEIGICNLVSVNL---MSWVNFSEEKKKSFCYTLLRGCDNIIDSQFYPVKEGEIA 535

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N  +R IG+G++ + + L    + Y   EA+E  ++  E + +H   AS  LA+ERG Y 
Sbjct: 536 NKKNRPIGIGVINYANLLASNKLKYTDKEALEFTNKIFEDLYYHIYEASNILAKERGPYK 595

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +F  S W +G  P+    L      +  ++      W++L + +K  G+R S   AIAPT
Sbjct: 596 TFNESKWREGKTPVHISLLNKSSNLKFDID---MDKWNKLAENIKNYGVRFSFHGAIAPT 652

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           AT       ++SI+P     +V+                                     
Sbjct: 653 ATSGKSVSATESIEPIVDLFFVEEG----------------------------------- 677

Query: 830 SIGNIERIPDDLK---KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885
            I  +  +  +LK   + +   ++I    +IE A+ RQ++IDQ+QSLNLY  +P S K+L
Sbjct: 678 -IQTLPSLAPNLKKNREYYERCWDIPAKTIIELAAIRQRYIDQSQSLNLYYVKPDSAKEL 736

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
               + A  +GLKT YY+++   ++ E   +
Sbjct: 737 WDDIQYAMDLGLKTLYYMKT-PKSNFELEEV 766



 Score = 38.3 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 31 VIKRNGGVTSFDPSKISRAI----------MKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
          +IKR+G    F+  K+ + I            A +       +  ++++ +   L    V
Sbjct: 12 IIKRDGREEPFNEEKLKKVINWATDGKEGFTNALLEGLNIKINDRMKIEVLYDELINTAV 71

Query: 81 TRLLQHNKSALIV 93
           ++     S   +
Sbjct: 72 NKISPLYPSYDTI 84


>gi|300088374|ref|YP_003758896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528107|gb|ADJ26575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 902

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 181/665 (27%), Positives = 286/665 (43%), Gaps = 84/665 (12%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345
           F    L +L  RY      G  IE P+    RVA  +A  E   + +        EFY L
Sbjct: 155 FSDNALAVLNKRYLKKDKQGQAIEAPEDMLRRVARTVAAAELIYDPKCNVRNVENEFYGL 214

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++   F+ ++PTL N+G    QLS+CF+  + D +  IF A++  AM+ K  GG G  ++
Sbjct: 215 MARLEFLPNSPTLMNAGRELGQLSACFVLPIDDSIESIFDAVKHTAMIHKSGGGTGFSFS 274

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+E F+  
Sbjct: 275 RLRPESDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIEHFITA 334

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G       + N +  I D FM+    +  + L +P                     
Sbjct: 335 KQQAG----VLTNFNLSVAITDKFMEAARADEEYELINPQ-------------------- 370

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                 GE+   R+  A A++ +++ + ++TG P I F D  N  +P   +G + S+N C
Sbjct: 371 -----NGEVAGRRR--ARAIFDQIVQLAWKTGDPGIVFIDRINAENPTPKLGRIESTNPC 423

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFA---NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            E  L         CNLGS+NL          Q DYDKL  T+RTAVR LD+VID+N   
Sbjct: 424 GEQPLLPY----ESCNLGSVNLSKMVKGNGKKQVDYDKLRYTVRTAVRFLDDVIDVNKFP 479

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E+  +     R IGLG+MGF   L  L +PY SPEA+ + +E M FI   +  AS  LA
Sbjct: 480 LEQIAEQTRRTRKIGLGVMGFADMLIALGVPYNSPEALRVGEEVMGFIQAESHRASSALA 539

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERG + +++GS +D  V                                     MRN++
Sbjct: 540 DERGVFPAYEGSKYDGQVK------------------------------------MRNAS 563

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821
           C  IAPT T++ I G S  I+P +   + ++ M G     VN +     +    + E ++
Sbjct: 564 CTTIAPTGTLSIIAGCSSGIEPHFALCFTRNIMDGTRMIEVNPYFAEAARSGGFYSEELM 623

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             L      + +++ +P+++KK+  TA  I P   ++  +  QK+ D A S  +    + 
Sbjct: 624 KKLAE-GAHLEDMKEVPEEVKKLFVTAHSITPEGHVKMQAAFQKYTDNAVSKTVNFPADA 682

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +   ++ +Y  A+   LK     R         ST K    K                  
Sbjct: 683 TVAHVEEVYLMAYDEKLKGITIYRDGCKADQPMSTGKAEPAKAETPVPAPAPKPAGPRKR 742

Query: 941 PSSCT 945
                
Sbjct: 743 SKVTN 747


>gi|124516151|gb|EAY57659.1| ribonucleotide reductase [Leptospirillum rubarum]
          Length = 732

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/646 (25%), Positives = 279/646 (43%), Gaps = 86/646 (13%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE---KEKRAVEFYNLL 346
                  L++L  RY      G   E P+  F R+A  +A   ++   +E  A E+Y  +
Sbjct: 7   LNLSDNALKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFM 66

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +S  F+ ++PT+ N+G    QLS+CF+  V D +  IF  ++  A++ +  GG G  ++ 
Sbjct: 67  ASLDFLPNSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSR 126

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA +  T G++ G + F+KV N +  A+ QGG R+GA    L   H D+ EF+D +
Sbjct: 127 LRPKGAVVRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCK 186

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D  +  + N +  I D+FM+ V ++  + L +P                      
Sbjct: 187 M----DLTQVTNFNISVAITDVFMQAVKEDGEYDLIAPH--------------------- 221

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   +V  ++ A  ++ K+    +  G P + F D  N  +P        ++N C 
Sbjct: 222 ------NGEVVGRLRAREVFDKIAHNAWANGEPGLFFIDTANRANPTPSRWTYEATNPCG 275

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         CNLGSINL  H         + D+++L  ++  AVR LDNV+D N  
Sbjct: 276 EQVLGPY----ESCNLGSINLERHVRSSATGKPEVDWERLGRSVYLAVRFLDNVVDANRF 331

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            I +    N   R IGLG+MGF   L  L IPY S E +E+A++ M FI   A   S +L
Sbjct: 332 PIPELAAVNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDL 391

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+  G +  ++G                      +   +                  RNS
Sbjct: 392 AKVHGPFPYYEG----------------------IGTRK------------------RNS 411

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
           + + IAPT TI+ I   S   +P +  ++ K+ M G              ++   W + +
Sbjct: 412 HLLTIAPTGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEIVARREGFWSDGL 471

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +  + GS   +  +P+  +K+ ATA +I P W +   +  QK+ID A S  + L  E
Sbjct: 472 AEKIVQNHGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQE 531

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + + ++  Y  ++ +G K     R  S  +   +       K  +
Sbjct: 532 ATVEDVEDAYLLSFELGCKGITVYRDGSRHNQVLNLGTNAKEKKES 577


>gi|238695378|ref|YP_002922571.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           JS10]
 gi|220029514|gb|ACL78448.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           JS10]
          Length = 751

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 185/782 (23%), Positives = 316/782 (40%), Gaps = 64/782 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+++++  ++   C G   +    +  E   ++ DG++  D++   + 
Sbjct: 1   MQVQKSSGVSQDFDAQKIIKVLTWGCEG-TQIDPYELYEEIKTHLRDGMTTKDIQNLTVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  LI  +EP+Y  V A+ L+  LR+EV      +            + ++    + EG
Sbjct: 60  VAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPR-----------SFIDHISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERDF   Y G   L ++Y       G   E PQ   
Sbjct: 109 KYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E   +    + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R  +N   T
Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKNDYIT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         E +  +      A++      ++I A  L+   +T    T   +
Sbjct: 349 LFSPHEMGGELYYSYFEDQERFRELYEAAEKDPSIRKKRIKARDLFELFMTERSGTARIY 408

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
             F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 409 PQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNFDWQD 468

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A K     R +G+G+  + + L      Y   
Sbjct: 469 QDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASYE-- 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 526 DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKIDQIA 582

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                   W  L++ +   G+RNS   A+ P  + + +   +  I+P    + +K +  G
Sbjct: 583 APNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKESKEG 641

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F  V   +      + L+D         +  S+      P      + T          
Sbjct: 642 NFRQVVPNVE---HNQGLYD---------YAWSLAKKGNKP------YLT---------- 673

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY--LRSRSA 908
              +   KW+ Q+ S N Y D  + +K       +       W  G K  YY   R  S 
Sbjct: 674 -QVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTRDGSG 732

Query: 909 TS 910
           T 
Sbjct: 733 TD 734


>gi|225631267|ref|ZP_03787950.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225591041|gb|EEH12240.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 584

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 191/672 (28%), Positives = 297/672 (44%), Gaps = 101/672 (15%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F   G  +L DRY +       E  Q  F R+A   +  +      A   Y+ +S+  FM
Sbjct: 4   FTDFGKAVLSDRYLIEN-----ESYQDLFARIANYYSDNKE----HAQRLYDYMSNLWFM 54

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            STP L N GT+     SCFL    D L GI     EN  LA   GG+G+ W  +R +G 
Sbjct: 55  PSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIGE 114

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-D 471
            + G +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLDLRK TG D
Sbjct: 115 SVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLDLRKPTGGD 173

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R+  +++ A  + D FM+ V  +  W L SP                           
Sbjct: 174 PNRKALNIHHAVIVTDKFMQAVENDQEWNLISPHNN------------------------ 209

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEI 588
              KV   + A  +W K+LT   ETG P+I F D  N   P+ +      +  SNLC+EI
Sbjct: 210 ---KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIKMSNLCSEI 266

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           TL +  +           L +       +++     I   +R LDNV++   +      +
Sbjct: 267 TLTTGYDHLNKSRTAVCCLSSVNLEYYEEWEDNKLFIEDIMRFLDNVLEDFINKAPNEMQ 326

Query: 649 SNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
                    R+IGLG+MGF S L    +P+ S  A +   +  +++   A   S +LA+E
Sbjct: 327 RAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSKKLAEE 386

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +GA                          D   ++   R                 ++ +
Sbjct: 387 KGACP------------------------DAKEVDLMER----------------FTHKL 406

Query: 765 AIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           AIAPTA+I+ I G  S  I+P   N++++  ++G F V N FL   L +++  ++ + S 
Sbjct: 407 AIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDNDKIWSS 466

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
           +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+QS+NL+L      
Sbjct: 467 ISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASNRTSYICQSQSVNLFLPANVHK 526

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           + L  I+  AW  GLK+ YY RS+S    +K +             TD            
Sbjct: 527 RYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD------------ 574

Query: 943 SCTSDTECEVCQ 954
                 EC  CQ
Sbjct: 575 --IDYDECLSCQ 584


>gi|206602949|gb|EDZ39429.1| Ribonucleotide reductase [Leptospirillum sp. Group II '5-way CG']
          Length = 732

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/646 (26%), Positives = 281/646 (43%), Gaps = 86/646 (13%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE---KEKRAVEFYNLL 346
            +     L++L  RY      G   E P+  F R+A  +A   ++   +E  A E+Y  +
Sbjct: 7   LSLSDNALKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFM 66

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +S  F+ ++PT+ N+G    QLS+CF+  V D +  IF  ++  A++ +  GG G  ++ 
Sbjct: 67  ASLDFLPNSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSR 126

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA +  T G++ G + F+KV N +  A+ QGG R+GA    L   H D+ EF+D +
Sbjct: 127 LRPKGAVVRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCK 186

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D  +  + N +  I D+FMK V ++  + L +P                      
Sbjct: 187 M----DLTQVTNFNISVAITDVFMKAVKEDGEYDLIAPH--------------------- 221

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   +V  K+ A  ++ K+    +  G P + F D  N  +P        ++N C 
Sbjct: 222 ------NGEVVGKLRAREVFDKIAHNAWANGEPGLFFIDTANRANPTPSRWTYEATNPCG 275

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L         CNLGSINL  H       N + D+++L  ++  AVR LDNV+D N  
Sbjct: 276 EQVLGPY----ESCNLGSINLERHVRSSATGNPEVDWERLGRSVYLAVRFLDNVVDANRF 331

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            I +    N   R IGLG+MGF   L  L IPY S E +E+A++ M FI   A   S +L
Sbjct: 332 PIPELAAVNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDL 391

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+  G +  ++                          +  +R               RNS
Sbjct: 392 AKVHGPFPYYE--------------------------DIGTRK--------------RNS 411

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
           + + IAPT TI+ I   S   +P +  ++ K+ M G              ++   W + +
Sbjct: 412 HLLTIAPTGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEVVARREGFWSDGL 471

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              +  + GS   +  +P+  +K+ ATA +I P W +   +  QK+ID A S  + L  E
Sbjct: 472 AEKIVQNHGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQE 531

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            + + ++  Y  ++ +G K     R  S  +   +       K  +
Sbjct: 532 ATVEDVEDAYLLSFELGCKGITVYRDGSRHNQVLNLGTNAKEKKES 577


>gi|256751879|ref|ZP_05492751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749286|gb|EEU62318.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 770

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/633 (27%), Positives = 276/633 (43%), Gaps = 84/633 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +   ++          FY
Sbjct: 1   MKITENARKVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL             DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAV++ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +    I +                                  
Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
                        + I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++ ++    GS+ +I+ IP+D+K+I   A +IDP W ++  +  QK +D A S  +   
Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +E + + +   Y  A+ +G K     R  S  S
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRES 562


>gi|116747708|ref|YP_844395.1| ribonucleotide-diphosphate reductase subunit alpha [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696772|gb|ABK15960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophobacter fumaroxidans MPOB]
          Length = 728

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 181/669 (27%), Positives = 287/669 (42%), Gaps = 80/669 (11%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEK 337
           +K E         L +L  RY      G  IE P+  F RVA  +A  +       + E+
Sbjct: 4   VKKEHPLRMTPNALVVLRKRYLEKDDEGKPIETPEELFWRVARTIAQADVAFQGPEKAEE 63

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
            A  FY L++S  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  
Sbjct: 64  TADRFYALMTSLDFIPNSPTLMNAGRPLGQLSACFVLPVEDSIDSIFEAIKHAAMIHKSG 123

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG G  ++ +R     +  T G + G + F+ V +     + QGG R+GA    L   H 
Sbjct: 124 GGTGFSFSRIRPENDKVLSTQGVASGPVSFMSVFDTATETIKQGGTRRGANMGILRVDHP 183

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+E+F+  +     D  R  + N +  + D FMK V ++A + L SP             
Sbjct: 184 DIEKFITCKT----DNDRMTNFNISIAVTDSFMKAVEEDAEYELISPRTRER-------- 231

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                               + +SA  ++ ++    +  G P I F D  N  +P  HVG
Sbjct: 232 -------------------VQSLSARKVFDEITQSAWRNGEPGIIFLDVMNRHNPTPHVG 272

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + S+N C E  L         CNLGSINL +   +   DY+ L   +  AV  LDNVI+
Sbjct: 273 EIESTNPCGEQPLLPY----ESCNLGSINLASMHRDGNIDYEHLKEVVWDAVHFLDNVIE 328

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N + ++  +     +R IGLG+MGF   L  L +PY S  AVE A++ M FI   + +A
Sbjct: 329 VNNYPLQIIEDMTRGNRKIGLGVMGFSDLLISLGVPYNSEAAVETAEKVMSFIQQESKAA 388

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S    +ERG + ++ GS++++   P                                   
Sbjct: 389 SAHYGKERGNFVNYAGSIYERPETPH---------------------------------- 414

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLW 816
           MRN+    IAPT TI+ I G S  I+P +   +V+  + G +   V+       ++R  +
Sbjct: 415 MRNATTTTIAPTGTISIIAGCSSGIEPLFAISFVRKVLDGQELVEVHPLFQKVARERGFY 474

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + ++  +    GSI N   IP D++ +  T+ ++ P W I   +  QK  D A S  + 
Sbjct: 475 SDDLMKKIAE-KGSIKNFLEIPADVRNVFVTSHDVTPDWHIRIQAAFQKHTDNAVSKTIN 533

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSS 934
                + + +   Y QA+ +G K     R  S    V     K    ++   P  D  + 
Sbjct: 534 FPFSATPEDVSSAYLQAYKLGCKGLTIYRDGSRDVQVLNIQRKPQYPQVEPRPRPDRTTG 593

Query: 935 THSLGIPSS 943
                    
Sbjct: 594 ITERVNTGC 602


>gi|73667183|ref|YP_303199.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia canis
           str. Jake]
 gi|72394324|gb|AAZ68601.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
          Length = 622

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 199/680 (29%), Positives = 296/680 (43%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y RD      G  +L DRY L       E  Q  F+R++   +         A   Y+
Sbjct: 33  VDYGRDNNLTSFGKAVLSDRYLLEN-----EDYQQLFVRISEYYSDNPE----HAQRLYD 83

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 84  YMSQLWFMPATPILSNGGTNRGLPISCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYW 143

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 144 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 202

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++    + D FMK V  +  W L SP +                 
Sbjct: 203 LRKPTGGDPNRKALNIHHGVVLSDKFMKCVENDEPWDLISPKDQ---------------- 246

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  +W K+LT   ETG P+I F D      P+ +      + 
Sbjct: 247 -----------SVIFTVKARDIWIKILTTRVETGEPYILFIDQVEQNKPEIYKKLNLNIK 295

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
            SNLCTEITL +  +           L +        +   +  I   +R LDNV    I
Sbjct: 296 MSNLCTEITLTTGYDHLNKSRTAICCLASLNLEYYEKWKDNSLFIEDVMRFLDNVLTDFI 355

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +   + +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I  HA +
Sbjct: 356 EKAPNDMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIKRHADA 415

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  +A E+G+                D+       R                       
Sbjct: 416 ASYNIAMEKGSCP--------------DAQDAGVIER----------------------- 438

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   L  +  
Sbjct: 439 ---FVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLIVKGK 495

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            +E + S +  ++GS+ +++ + ++ K I  TA+E+D  W+IE  S R K+I QAQS+N+
Sbjct: 496 DNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNI 555

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  GLK+ YY RS+S    +K +   ++  +           
Sbjct: 556 FLPANVHKRYLHKIHFLAWKKGLKSLYYCRSKSIQRADKVSHGALEKSVEQYKQITN--- 612

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 613 ----------FDYNECLSCQ 622


>gi|57234550|ref|YP_181365.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
 gi|57224998|gb|AAW40055.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 599

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/650 (26%), Positives = 291/650 (44%), Gaps = 83/650 (12%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEF 342
           D        ++L  RY     NG  IE P+  F RVA  +A  E +            EF
Sbjct: 13  DVRLSTTAKRVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEF 72

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y  +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G 
Sbjct: 73  YQAMSRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGF 132

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R  G  +      + G +  + + +  A  V QGG R+G   A L+  H D+ +F
Sbjct: 133 SFSNLRPAGDKVGELTEVAGGPVSVINIFSAAADYVRQGGVRRGCNAAILDVTHPDILKF 192

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +     D     +   +  +   FM +V     + + +P                  
Sbjct: 193 ISCKG----DPNALTNFYISVVVTREFMTKVRSGEDYDIINPHT---------------- 232

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       +V ++++A  ++  ++   ++TG P + F D  N  +P   +G +   
Sbjct: 233 -----------GEVVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHV 281

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDI 638
           + C E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+
Sbjct: 282 SGCGEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDV 337

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N     + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ MEFI   +  AS
Sbjct: 338 NRFPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRAS 397

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA+ RG++ +++GS++D                                        M
Sbjct: 398 SKLAEARGSFPAYEGSIYDVPGGRP----------------------------------M 423

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWD 817
           RN+ C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++     
Sbjct: 424 RNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHS 483

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           + +   L   +  + ++E +PD LK++  TA  I P W I   +  QK+ D A S  +  
Sbjct: 484 KELFEKLVSSN-HLHDMECVPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNF 542

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             E + + +  ++  A+  GLK     R  S  +    T +     ++  
Sbjct: 543 SHEATREDMANVFNLAYDKGLKGITVYRDGSRAAQPLCTSESGVKLVDQY 592


>gi|161622627|ref|YP_001595353.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           JS98]
 gi|160331905|gb|AAU29205.2| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           JS98]
          Length = 751

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 185/782 (23%), Positives = 316/782 (40%), Gaps = 64/782 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+++++  ++   C G   +    +  E   ++ DG++  D++   + 
Sbjct: 1   MQVQKSSGVSQDFDAQKIIKVLTWGCEG-TQIDPYELYEEIKTHLRDGMTTKDIQNLTVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +  LI  +EP+Y  V A+ L+  LR+EV      +            + ++    + EG
Sbjct: 60  VAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPR-----------SFIDHISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERDF   Y G   L ++Y       G   E PQ   
Sbjct: 109 KYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E   +    + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R  +N   T
Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKNDYIT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         E +  +      A++      ++I A  L+   +T    T   +
Sbjct: 349 LFSPHEMGGELYYSYFEDQERFRELYEAAEKDSSIRKKRIKARDLFELFMTERSGTARIY 408

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
             F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 409 PQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNFDWQD 468

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A K     R +G+G+  + + L      Y   
Sbjct: 469 QDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASYE-- 525

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 526 DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKIDQIA 582

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                   W  L++ +   G+RNS   A+ P  + + +   +  I+P    + +K +  G
Sbjct: 583 APNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKESKEG 641

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F  V   +      + L+D         +  S+      P      + T          
Sbjct: 642 NFRQVVPNVE---HNQGLYD---------YAWSLAKKGNKP------YLT---------- 673

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY--LRSRSA 908
              +   KW+ Q+ S N Y D  + +K       +       W  G K  YY   R  S 
Sbjct: 674 -QVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTRDGSG 732

Query: 909 TS 910
           T 
Sbjct: 733 TD 734


>gi|167039475|ref|YP_001662460.1| ribonucleotide-diphosphate reductase subunit alpha
           [Thermoanaerobacter sp. X514]
 gi|300915422|ref|ZP_07132735.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X561]
 gi|307725199|ref|YP_003904950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X513]
 gi|166853715|gb|ABY92124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X514]
 gi|300888482|gb|EFK83631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X561]
 gi|307582260|gb|ADN55659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter sp. X513]
          Length = 770

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 177/633 (27%), Positives = 276/633 (43%), Gaps = 84/633 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +         E     FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL             DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +    I +                                  
Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
                        + I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++ ++    GS+ +I+ IP+D+K+I   A +IDP W ++  +  QK +D A S  +   
Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +E + + +   Y  A+ +G K     R  S  S
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRES 562


>gi|296127718|ref|YP_003634970.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira
           murdochii DSM 12563]
 gi|296019534|gb|ADG72771.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira
           murdochii DSM 12563]
          Length = 771

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 214/813 (26%), Positives = 360/813 (44%), Gaps = 101/813 (12%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L  +   A  G++  +   +L      + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLRKVTNWATGGIEAFT-NQLLEGLNIKINDKMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +I    P Y  +  +  L K+ +E                       +  + I+  + 
Sbjct: 71  VNMISPLYPVYDTIAEKLYLMKIYKETCG--------LKKIGSYPHIKNFLKKGIKYKIY 122

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            + + +   D +L  + + +   RD  F Y GL I Y +Y  +I   ++E+PQ  +M  A
Sbjct: 123 DKDIVKLFSDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITYMTAA 182

Query: 326 MGLALKETE--------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           M     +                + K   + Y++LS      +TP + NS T   QL+SC
Sbjct: 183 MFSFYNDYYKGENKDKLEISKAERLKYIKKTYDMLSRHEVTFATPRIANSMTIKAQLASC 242

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G IPF+K  
Sbjct: 243 ILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPFIKRV 302

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I ++F +
Sbjct: 303 EQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNIFRE 362

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++   TLF P E   L++ YG++F +AY  YE ++   + K+     A  L  ++L 
Sbjct: 363 RVNKDGYVTLFDPKETPLLNEEYGEKFNVAYMYYESKSSIRKKKIK----AKDLLFQILK 418

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595
           +  ETG+ ++TF D  N          V +SNLC EI + S                   
Sbjct: 419 VRQETGNLYLTFVDNINE--QNMVNKFVGASNLCQEIVIPSYPSKLIDEKYVINEEGEYE 476

Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   E  +CNL SINL    +   FD +K  S   T +R  DN+ID   + +++ +
Sbjct: 477 IIQRKKSGEIGICNLVSINL---MSWVNFDEEKKKSFCYTLLRGCDNIIDTQFYPVKEGE 533

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R IG+G++ + + L    + Y   EA+E  ++  + + +H   AS  LA+ERG 
Sbjct: 534 IANKKNRPIGIGVINYANLLASNKLKYTDREALEFTNKVFDDLYYHIYQASNLLAKERGP 593

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +F  S W  G+ P     L    +  ++++   +  WD+L + +KT G+R S   AIA
Sbjct: 594 YKTFNESKWKDGLTPFHISLLNKSDKLNVSLD---KEKWDKLAEEIKTSGVRFSFHGAIA 650

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTAT       ++SI+P     +V+                                   
Sbjct: 651 PTATSGKSVSATESIEPIVDLYFVEEG--------------------------------- 677

Query: 828 DGSIGNIERIPDDLK---KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
              I  +  +  ++K     +   + I    +IE A+ RQ++IDQ+QSLNLY  +P S K
Sbjct: 678 ---IQTLPSLVPNIKNNRAYYERCWAIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSAK 734

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +L    + A  +GLKT YY+++   ++ E   +
Sbjct: 735 ELWDDIQYAMDLGLKTLYYMKT-PKSNFELEEV 766


>gi|15604373|ref|NP_220889.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           prowazekii str. Madrid E]
 gi|3861065|emb|CAA14965.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (nrdA) [Rickettsia
           prowazekii]
 gi|292572127|gb|ADE30042.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia
           prowazekii Rp22]
          Length = 607

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/680 (28%), Positives = 297/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  + +      G  IL DRY +       E  Q  F RV+   A      ++ A + Y 
Sbjct: 13  INNKYNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSHYAEN----KQHAQKLYE 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 64  YMSQMWFMPATPILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 124 GNVRSINEAIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R++ +++    I D FM+ V  N  + L SP                   
Sbjct: 183 IRRPTGGDVNRKSLNIHHGITITDEFMQAVENNMDFDLVSPAT----------------- 225

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H      V 
Sbjct: 226 ----------KKVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPEHHKKLGLQVK 275

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +        +      I + +  LDNV++   
Sbjct: 276 MSNLCSEITLPTGIDHLGNSRTAVCCLASLNLEYYEVWKDDKEFIHSIMLFLDNVLEDFI 335

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +           +    R++GLG++GF S L +  IP  S  A     +  E+IS     
Sbjct: 336 NKAPNTMARAKYAAFRERSVGLGVIGFHSFLQMKKIPIESVMAKVWNKKIFEYISAEVDK 395

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+E+ +++GA                D++   +  R                       
Sbjct: 396 ASIEIGKDKGACP--------------DALDSGSNER----------------------- 418

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++  
Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGF 475

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  H+GS+ ++  + ++ K+I  TA+EID  WLIE A+ R  +I Q+Q+LN+
Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNI 535

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L    S K L+ I+ +AW  G+K+ YY RS S    +K +          V   D    
Sbjct: 536 FLHGNVSKKYLNNIHFKAWKKGIKSLYYCRSTSIQRADKVSHD--------VLKADFKDL 587

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                  +   +  EC  CQ
Sbjct: 588 EKQNDKLAQTRNYEECLACQ 607


>gi|326391806|ref|ZP_08213324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992164|gb|EGD50638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 770

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/633 (27%), Positives = 275/633 (43%), Gaps = 84/633 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +         E     FY
Sbjct: 1   MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL             DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAVE+ +E M FI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMGFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +    I +                                  
Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
                        + I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++ ++    GS+ +I+ IP+D+K++   A +IDP W ++  +  QK +D A S  +   
Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +E + + +   Y  A+ +G K     R  S  S
Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRES 562


>gi|91200074|emb|CAJ73117.1| similar to ribonucleoside-diphosphate reductase 1 alpha chain
           [Candidatus Kuenenia stuttgartiensis]
          Length = 589

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/635 (27%), Positives = 284/635 (44%), Gaps = 83/635 (13%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345
                   L  RY      G  IE P+  F RVA  +A  +    K         EFY+L
Sbjct: 8   LSPNAKLTLEKRYLKRNVLGKIIESPEDMFRRVAKNIASVDLIYNKKADIVSMEEEFYHL 67

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++S  F+ ++P L N+G    QL +CF+  V D + GIF  +++ A++ K  GG G  ++
Sbjct: 68  MTSLQFLPNSPALMNAGRHLQQLLACFVLPVEDSIEGIFDTVKQAALIHKSGGGTGFSFS 127

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  + G + G + F+KV N+   A+NQGG R+GA  A L   H D+ +F+  
Sbjct: 128 RIRPKNDIVSASCGMASGPVSFMKVFNEATEAINQGGFRRGANMAALNVNHPDIFDFIHA 187

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +   G       + N +  I + FM+ V  +A + L +P                     
Sbjct: 188 KNTEG----VLTNFNISVGITNAFMEAVENDAPFPLINPRT------------------- 224

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                     V + I A  L+++++   ++ G P + F D  N  +P   +G +  +N C
Sbjct: 225 --------KLVVKTIRAKVLFQEIVQSAWKNGEPGVLFIDAINAANPTPLLGSIEGTNPC 276

Query: 586 TEITLNSSSEETAVCNLGSINLLAH----FANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
            E  L         C LGS+N+         + + ++  L  TI  AV  LDNVID   H
Sbjct: 277 GEQPLLPY----EACVLGSVNVSQMTTYKNDHYEMNWHTLEKTIHLAVHFLDNVIDATKH 332

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + + +     +R IGLG+MGF   L  L+I Y S EA+   D+ + F S  A  AS  L
Sbjct: 333 PLPQIEVLTKGNRKIGLGIMGFADLLIKLNISYNSEEAMRFTDKLLRFFSGKANEASERL 392

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A ERG + +++ S++ Q   P                                    RN+
Sbjct: 393 ASERGMFPNYEKSIYAQQNGPK----------------------------------YRNA 418

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT TI+ I   S  I+P +   Y ++ +  G    ++ F  N  K+R L+ + +
Sbjct: 419 TRTTIAPTGTISIIANCSSGIEPLFAIAYTRNVLVEGGLPEIHPFFENVAKKRGLYTDKL 478

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           ++++K  +GSI NI  IP D+K+I  TA +I P + ++  S  QK+ID A S  +    E
Sbjct: 479 LAEVKR-EGSIQNIAYIPYDIKRIFTTARDISPEYHVKIQSICQKYIDNAVSKTINFPKE 537

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            + + ++ ++  A+  G K     R +S  S   S
Sbjct: 538 STAEDVEKVFLLAYRSGCKGITIYRDKSRMSQALS 572


>gi|167036756|ref|YP_001664334.1| ribonucleotide-diphosphate reductase subunit alpha
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115179|ref|YP_004185338.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855590|gb|ABY93998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928270|gb|ADV78955.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 770

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/633 (27%), Positives = 275/633 (43%), Gaps = 84/633 (13%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFY 343
                   ++L  RY     NG  IE  +  F RVA  +A  +   ++          FY
Sbjct: 1   MKITENARKVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++    F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K    D     + N +  I + FMK V ++  + L  P                   
Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  ++ A  ++  ++ M +  G P I F D  N ++P   VG + S+N
Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL             DYDKL  T+  AV  LDNVID N
Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + + ++     R IGLG+MGF + L  L IPY S EAV++ +E MEFI   +  AS+
Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA++RG +  +  S++ +    I +                                  
Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
                        + I G S  I+P +     ++ M   +   VN        +R  + E
Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++ ++    GS+ +I+ IP+D+K++   A +ID  W ++  +  QK +D A S  +   
Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRVFVIAHDIDHEWHVKMQAAFQKHVDNAVSKTVNFR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +E + + +   Y  A+ +G K     R  S  S
Sbjct: 530 NEATVEDVRRTYLLAYKLGCKGVTIYRDGSRES 562


>gi|125972577|ref|YP_001036487.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           thermocellum ATCC 27405]
 gi|256005139|ref|ZP_05430108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 2360]
 gi|281416768|ref|ZP_06247788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum JW20]
 gi|125712802|gb|ABN51294.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum ATCC 27405]
 gi|255990886|gb|EEU00999.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 2360]
 gi|281408170|gb|EFB38428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum JW20]
 gi|316941185|gb|ADU75219.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium thermocellum DSM 1313]
          Length = 794

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/671 (24%), Positives = 279/671 (41%), Gaps = 84/671 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343
                  +++L  RY     NG+ +E P+  F RVA  +A  + E            EFY
Sbjct: 1   MNLTENAIKVLKKRYLAKDENGNLLEDPEGMFRRVARTVASADKEYVSEEELKSIEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  + D + GIF  ++  A++ K  GG G  
Sbjct: 61  DMMVNLDFLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDIVEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +KN  D      + N +  I + FM  V  N  + L  P                   
Sbjct: 181 TCKKNNAD----ITNFNISVGITEEFMNAVENNEYYNLVEPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      K+  K +A  ++  ++ M +  G P I F D  N  +    +G + S+N
Sbjct: 220 ----------GKIVGKQNAREIFDLIVDMAWNNGEPGIIFLDRLNKDNVTPELGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL           + D+ KL +T+  AV  LDNVID+N
Sbjct: 270 PCGEQPLLPY----EACNLGSINLSNMLKYVDGKPEVDFAKLRTTVWKAVHFLDNVIDVN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +  K     R IGLG+MG+   L  L+IPY S  ++++A++ M FI   +  AS+
Sbjct: 326 KYPLPEIDKMTRGTRKIGLGVMGWADMLCKLNIPYNSQSSIDLAEKIMHFIQDESRKASM 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+++G +  +  S++      + +                                  
Sbjct: 386 ELAEKKGVFPYYDKSIYKNLGIRVRNATTTTIAPTGTL---------------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
                        + I GVS  I+P +   Y+++ M   +   VN       K+   + +
Sbjct: 424 -------------SIIAGVSSGIEPLFAISYIRNVMDNDELVEVNPVFKQVAKEEGFYSD 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++  +    GSI   + IP+ ++ +  TA +I P W +   +  QK+ D A S  + L 
Sbjct: 471 ELMRRIAK-KGSIRGFDEIPEWIQDVFVTAHDISPDWHVRMQAAFQKYTDNAVSKTVNLR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +E + K +   +  A+    K     R  S      +  K    + +     +   +   
Sbjct: 530 NEATRKDVADAFWLAYKTNCKGITIYRDGSRDLQVLNIGKVKGKEESVSKAREEGPAKPK 589

Query: 938 LGIPSSCTSDT 948
             I        
Sbjct: 590 EQIKPVSGIAP 600


>gi|311232338|gb|ADP85192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris RCH1]
          Length = 754

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/661 (25%), Positives = 281/661 (42%), Gaps = 90/661 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E           E
Sbjct: 14  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 73

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 74  FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 133

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 134 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 193

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P                 
Sbjct: 194 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHS--------------- 234

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                            ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 235 ------------GLEKGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 282

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----------DYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F               D+  L   I   VR 
Sbjct: 283 TNPCGEQPLLPY----EACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 338

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 339 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 398

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S +                                   
Sbjct: 399 DEGRAASKQLAKERGPFPAYPASTFA------------ERDLGP---------------- 430

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+    VN       
Sbjct: 431 ------YRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 484

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 485 RAEGCHSPRLMETVAS-KGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 543

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  + L +  + + +  IY  A+  G K     R    +     T  G           
Sbjct: 544 VSKTVNLPNNATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEAEGK 603

Query: 930 D 930
            
Sbjct: 604 G 604


>gi|46581780|ref|YP_012588.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451203|gb|AAS97848.1| ribonucleoside-diphosphate reductase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 777

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/661 (25%), Positives = 281/661 (42%), Gaps = 90/661 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E           E
Sbjct: 37  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 96

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 97  FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 156

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 157 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 216

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P                 
Sbjct: 217 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHS--------------- 257

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                            ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 258 ------------GLEKGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 305

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----------DYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F               D+  L   I   VR 
Sbjct: 306 TNPCGEQPLLPY----EACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 361

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 362 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 421

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S +                                   
Sbjct: 422 DEGRAASKQLAKERGPFPAYPASTFA------------ERDLGP---------------- 453

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+    VN       
Sbjct: 454 ------YRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 507

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 508 RAEGCHSPRLMETVAS-KGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 566

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  + L +  + + +  IY  A+  G K     R    +     T  G           
Sbjct: 567 VSKTVNLPNNATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEAEGK 626

Query: 930 D 930
            
Sbjct: 627 G 627


>gi|319942043|ref|ZP_08016362.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319804427|gb|EFW01305.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 591

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/683 (28%), Positives = 288/683 (42%), Gaps = 102/683 (14%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +A  + +ERD  F+ LGL  L + Y           PQ  F  VA             A 
Sbjct: 1   MAVQMNFERDKLFDELGLMRLRESYMRSSEK----SPQERFAFVAETFGSNPE----HAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+  S      STP L    ++     SCFLT + D   G+   L E   L+   GG+
Sbjct: 53  RIYDYASRHWLSFSTPILSFGRSKKGLPISCFLTYMEDSAEGLVDTLSEVNWLSMLGGGV 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G            I   + KS GV+P LKV +   +A  QG  R+G+  A+L+  H D+ 
Sbjct: 113 GIHV--------RIRSADEKSVGVMPHLKVYDAACLAYRQGSTRRGSYAAFLDIDHPDII 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+++RK TGD   +  +++    + D FM+++  +                      + 
Sbjct: 165 PFIEMRKPTGDQNMKALNLHHGVNLSDAFMEKIEASMR--------------------DS 204

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVG 577
           +Y++          +V  K+SA  LW+++L M   TG P++ F D  N   P        
Sbjct: 205 SYDDTWELRHPSTHEVVAKVSARDLWQRILEMRMHTGEPYLVFIDTANRALPSWLKDKGL 264

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
            +H SNLCTEI L +S + TAVC L S+NL         ++      I  A+ +LDNV  
Sbjct: 265 SIHGSNLCTEIFLPTSHDRTAVCCLSSLNLE-----YFDEWKNNQQFITDAMELLDNVLQ 319

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID     I +A+ S    R++GLG +GF + L    +P+ S  A  I  +    I   
Sbjct: 320 YFIDHAPDQIARARYSAMRERSVGLGALGFHAYLQKKGVPFESAAAKSINKQVFRMIRTA 379

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
              A  +L  ERGA      S                                       
Sbjct: 380 CAEADKKLCAERGACPDAADSGVS------------------------------------ 403

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S+ M++AP A+ + I  G S SI+P   N+Y +  +SG + + N FL  +L +
Sbjct: 404 ----RRFSHWMSVAPNASSSLIMGGTSPSIEPYRANIYRQDTISGAYIMKNRFLKAKLAE 459

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             L  E + +DL  HDGSI + + IP D+K +  TA EID  W++E A+ RQ++IDQ QS
Sbjct: 460 LGLDTEEVWADLIAHDGSIQHRDDIPQDVKDVFKTAPEIDQRWIVELAADRQEFIDQGQS 519

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           +NL+   + S   L   +  AW  GLK+ YY RS                K + V V   
Sbjct: 520 VNLFFPPDVSIAYLHACHFLAWKKGLKSLYYNRS------------DKLRKADRVGVKAE 567

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                      +   ++ C  C+
Sbjct: 568 RKRIEDEIDMRAVADNSTCLACE 590


>gi|289432245|ref|YP_003462118.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
 gi|288945965|gb|ADC73662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
          Length = 866

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 201/801 (25%), Positives = 327/801 (40%), Gaps = 119/801 (14%)

Query: 156 SFNSKRLEMI--VEEACSGLQD-VSSKIVLSETYKNMYDGLS---ESDLETALIFSSRTL 209
             N  R+     V  A  G+ D V  + ++S+  K +   +      DL  + + +   L
Sbjct: 12  PVNRNRVARAMFVAAASMGISDRVQIETLISQLIKRLEKPVGLPGMEDLLPSDLKAPAVL 71

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              +           ++ + +EVL    K  Q     + +   P      ++  +KA   
Sbjct: 72  ATDDE----------IDIMVKEVLDAGNKDKQNQIETQAKEEEPMPVKVQVKSEMKADAR 121

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL 328
            E +                        + +L  RY      G   E  +  F RVA  +
Sbjct: 122 TEGL------------------KLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTI 163

Query: 329 ALKETEKEK------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           A+ E           R  EF+NL++   F+ ++PTL N+G    QLS+CF+  V D +  
Sbjct: 164 AMGELIYNPKADVRSREDEFFNLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIES 223

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A++  AM+ K  GG G  ++ +R     +  T G + G + F++  +     + QGG
Sbjct: 224 IFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGG 283

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA  A L   H D+ +F+    +  D      + N +  I D FM+ V     + L 
Sbjct: 284 TRRGANMAILSIDHPDIMKFV----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLL 339

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                              +V   ++A  ++ K++ M ++TG P I 
Sbjct: 340 NPH---------------------------NGEVVSSLNASEVFNKIVHMAWKTGDPGIV 372

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDY 618
           F D  N  +P   +G + S+N C E  L         CNLGSINL          N  DY
Sbjct: 373 FIDRINAYNPTPQLGRIESTNPCGEQPLLPY----ESCNLGSINLSRMVTVSGGQNTVDY 428

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL+  I++AVR LDNVID+N   + +  +     R IGLG+MGF   L  L +PY S  
Sbjct: 429 KKLSRVIKSAVRFLDNVIDVNKFPLPQIDEMTKKSRKIGLGVMGFADMLLELGVPYNSEN 488

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           ++++A+E M F++  A   S ELA ERG + +++GS++++   P                
Sbjct: 489 SIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSGRP---------------- 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG- 797
                              MRN++C  IAPT T++ I G S  I+P +   + ++ + G 
Sbjct: 533 -------------------MRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGT 573

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
               VN +     K+   + E +I  L    G+  +   +P D K +  TA +I P W +
Sbjct: 574 KMIEVNPYFERAAKEGGYYSEELIKSLAE--GAHLDEVDVPQDAKDLFVTAHQIVPEWHV 631

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  QK  D A S  +     +G+  +  +Y+ A    LK     R  S      ST 
Sbjct: 632 RIQAAFQKCTDNAVSKTVNFSRDAGECDVAEVYKMAHARNLKGITIYRDGSREDQPMSTG 691

Query: 917 KGVDGKLNAVPVTDPNSSTHS 937
           K  +         +PN     
Sbjct: 692 KAENKIETPAVAVNPNLMPRK 712


>gi|51473695|ref|YP_067452.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia
           typhi str. Wilmington]
 gi|51460007|gb|AAU03970.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
          Length = 607

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 195/680 (28%), Positives = 297/680 (43%), Gaps = 95/680 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +  + +      G  IL DRY +       E  Q  F RV+   A      ++ A + Y 
Sbjct: 13  INNKYNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 63

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L  I     EN  LA   GG+G+ W
Sbjct: 64  YMSQMWFMPATPILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYW 123

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +   I    G S G+IPF+KV +   +A++QG  R+G+   YL   H ++EEF+D
Sbjct: 124 GNVRSINEAIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +R+ TG D  R++ +++    I D FM+ V  N  + L SP                   
Sbjct: 183 IRRPTGGDVNRKSLNIHHGITITDEFMQAVENNMDFDLVSPAT----------------- 225

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV  K+ A  LW K+LT   ETG P++ F D  N   P  H      V 
Sbjct: 226 ----------KKVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPAHHKKLGLQVK 275

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +        +      I + +  LDNV++   
Sbjct: 276 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEVWKDDKEFIHSIMLFLDNVLEDFI 335

Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +           +    R++GLG++GF S L +  +P  S  A     +  E+IS     
Sbjct: 336 NKAPNTMARAKYAAFRERSVGLGVIGFHSFLQMKKVPIESVMAKVWNKKIFEYISSEVDK 395

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS+E+A+++GA                D++   +  R                       
Sbjct: 396 ASIEIAKDKGACP--------------DALDSGSNER----------------------- 418

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               SN  AIAPTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++  
Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGF 475

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  H+GS+ ++  + ++ K+I  TA+EID  WLIE A+ R  +I Q+Q+LN+
Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNI 535

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L    S K L+ I+ +AW  G+K+ YY RS S    +K +          V   D    
Sbjct: 536 FLHGNVSKKYLNNIHFKAWKKGIKSLYYCRSTSIQRADKVSHD--------VLKADFKDL 587

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                  +   +  EC  CQ
Sbjct: 588 EKQNAKLAQTRNYEECLACQ 607


>gi|120601069|ref|YP_965469.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           vulgaris DP4]
 gi|120561298|gb|ABM27042.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio vulgaris DP4]
          Length = 781

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/661 (25%), Positives = 280/661 (42%), Gaps = 90/661 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VE 341
           D A       +L  RY+    +G ++E  +  F RVA  +A +ET+ E           E
Sbjct: 41  DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 100

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 101 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 160

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     + QGG R+GA    L   H D+ +
Sbjct: 161 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 220

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+     ++ N +  + + FM+ V  +  + L +P                 
Sbjct: 221 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHS--------------- 261

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                            ++ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 262 ------------GLEKGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 309

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----------DYDKLASTIRTAVRV 631
           +N C E  L         CNLGS+NL A F               D+  L   I   VR 
Sbjct: 310 TNPCGEQPLLPY----EACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 365

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID +   +E+  +  H +R IGLG+MG+   L  L I Y SPEA+ + +  M F+ 
Sbjct: 366 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 425

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
               +AS +LA+ERG + ++  S +                                   
Sbjct: 426 DEGRAASKQLAKERGPFPAYPASTFA------------ERDLGP---------------- 457

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
                  RN+    IAPT T++ + G S  I+P +   + +  M G+    VN       
Sbjct: 458 ------YRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 511

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    GSI  ++ +P+ ++++  TA +I+P+W ++  +  Q++ D A
Sbjct: 512 RAEGCHSPRLMETVAS-KGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 570

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  + L    + + +  IY  A+  G K     R    +     T  G           
Sbjct: 571 VSKTVNLPNSATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEAEGK 630

Query: 930 D 930
            
Sbjct: 631 G 631


>gi|327311809|ref|YP_004338706.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20]
 gi|326948288|gb|AEA13394.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20]
          Length = 877

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 204/873 (23%), Positives = 356/873 (40%), Gaps = 96/873 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +K++   G    F+ ++L + +  A + +  VS      E        ++ ++L   + 
Sbjct: 29  AVKVIKASGAKEDFSEEKLRISLVRAAADV-GVSVD---GEVKIRPTSDITSAELSDLVE 84

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                    +P  A+     LL ++ +E L   + +         +  Y E     +E  
Sbjct: 85  LELLRKAIDKPELAEAAKSHLLGRIYKEALGKDFLRD--------KSKYGERVFASVERL 136

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHING-SRIEMPQAFF 321
           V A LL +  +   L ++   LK E D +  Y  L++  +  Y L        E P A  
Sbjct: 137 VSAGLLKQEALSA-LRWVE--LKPEFDRSLSYNALRLFTNGNYALRGPDFKIAETPAAA- 192

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
              A  +A       + A  +Y+ ++S   + ++P  FN+ T+    +SCF   V D L 
Sbjct: 193 ---AARVATAVAGSPEAARLYYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLS 249

Query: 382 G--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
                    I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G I F+K+ + 
Sbjct: 250 SLTHPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPISFMKLFDA 309

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR- 492
               + QGGKR+GA    L  WH D+ +F+  +     D     + N + ++ D FM++ 
Sbjct: 310 NVDVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDA-HLQNFNISVFVDDTFMEKA 368

Query: 493 --VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             V QN  + L +P    D      K  E      E +  R  I    ++ A  L+R++ 
Sbjct: 369 LGVDQNPKYPLINPRVFYD--KTGQKAVEHVDVYKEAEVPRDAIWG--EVDASQLFREIS 424

Query: 551 TMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVC 600
              +++G P + FK   N  +P           +   +  S N C E   N       VC
Sbjct: 425 NSAWDSGDPGLIFKANLNASNPLLGEEIEVAGYRFTYIWRSVNPCAETVQNPF----EVC 480

Query: 601 NLGSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           NL  INL+    +N             D++ LA   R   R LD+ ID +   IE   + 
Sbjct: 481 NLTHINLVKFIKDNCAGSSFEEKLACIDWEGLAQAARLGTRFLDSAIDRSRTGIEIVDEM 540

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           N   R  GLG+MGF   L  L IPYAS EAVE+ +  M +I  +A+ AS +LA+E+G + 
Sbjct: 541 NSATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDASADLAREKGPFK 600

Query: 710 SFKGSLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI---------- 756
            F+ S++ +G  P             R +       R   D L++  +            
Sbjct: 601 YFEKSIYARGELPALKFQDFVWSRWERVKHVYPPELRDAGDRLREITERTRQWLLPYIEK 660

Query: 757 -------GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                  G+RNS  ++IAPT   + + G +  I+P +   ++++   G         +  
Sbjct: 661 LKEKVKGGVRNSVVLSIAPTGRTSILAGTTSGIEPVFALAFLRNVTVGTLVEYYEPGIEY 720

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           LK R LW  A+   ++   G + +   +P+D+K + ATA EI  +W +   +  Q+W+DQ
Sbjct: 721 LKARGLWTPAVRKAVEET-GMLRDAP-VPEDVKHLLATAMEIGWLWHVLMQASAQQWVDQ 778

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTLKGV 919
             S  + +        + + +  AW +G+K     R +S +            K  L   
Sbjct: 779 GISKTINMPANAPSDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLAET 838

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950
              +  + +        +     +     D  C
Sbjct: 839 KITVRPISLETSIDEAANEVKLKALEEGKDPYC 871


>gi|188584791|ref|YP_001916336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349478|gb|ACB83748.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 752

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 176/671 (26%), Positives = 289/671 (43%), Gaps = 83/671 (12%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--------F 342
                    +L  RY         E P+    RVA  +A  E +  ++  +        F
Sbjct: 1   MELTKNAKMVLEKRYLKTNEKGETENPEDMLKRVADNIAQVEKDVYQKDKQEVSKVSQNF 60

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           ++L+ + +FM ++PTL N+G    QL++CF+  + D +  IF A++  A++ K  GG G 
Sbjct: 61  FDLMDNQYFMPNSPTLMNAGRELQQLAACFVLPIEDSMESIFEAIKNAALIHKSGGGTGF 120

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ +R     +  T G + G + F+KV N    AV QGG R+GA    L   H D++EF
Sbjct: 121 SFSNLRPKNDIVLSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRVDHPDIQEF 180

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +   K   D+     + N +  I + FM+ V Q+  ++L +P                  
Sbjct: 181 I-TCKRDSDEIN---NFNISVGITEEFMEAVKQDGEYSLKNPK----------------- 219

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       +  + + A  ++ K++ M +  G P I F D  N  +P  H+G + S+
Sbjct: 220 ----------NGQAVKTLRAREVFDKIVEMAWGNGEPGIVFIDKMNENNPTPHIGEIEST 269

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C E  L         CNLGS+NL     N   DY  L  T+ TAV  LDNVID N + 
Sbjct: 270 NPCGEQPLLPF----ESCNLGSVNLSKMVNNGAVDYQLLKETVHTAVHFLDNVIDANRYP 325

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + + +K++  +R IGLG+MGF   L  L IPY S EA+++A++ M +I   + + S ELA
Sbjct: 326 LPEIEKTSKENRKIGLGVMGFGDMLFKLRIPYNSQEALDLAEKVMGYIDQESKAKSQELA 385

Query: 703 QERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +ERGA+ +FKGS++DQ G  PI +                                    
Sbjct: 386 KERGAFPNFKGSIYDQKGEEPIRNATTTTIAPTGTI------------------------ 421

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
                      + +CG S  I+P +   + ++ +  D    VN       ++   +   +
Sbjct: 422 -----------SILCGTSSGIEPLFALAFTRNVLDNDKLVEVNPVFKEATEEAGCYSSEL 470

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
           +  +    GSI +I+ IPD +KK+  T+ +I P W ++  +  QK  D A S  + L +E
Sbjct: 471 MEKVA-DKGSIQDIDEIPDSIKKVFVTSHDISPEWHLKMQAAFQKATDNAVSKTVNLPNE 529

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
              K +  IY  A  +  K     R  S  T V +++      +         +      
Sbjct: 530 ADLKDVYEIYNLAHELNCKGVTVYRDGSRDTQVLQTSKAKSKQEEQKQQKPQKSEPKEGR 589

Query: 939 GIPSSCTSDTE 949
                     +
Sbjct: 590 AGEIVPRKRPD 600


>gi|147668970|ref|YP_001213788.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           sp. BAV1]
 gi|146269918|gb|ABQ16910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
          Length = 866

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 201/801 (25%), Positives = 328/801 (40%), Gaps = 119/801 (14%)

Query: 156 SFNSKRLEMI--VEEACSGLQD-VSSKIVLSETYKNMYDGLS---ESDLETALIFSSRTL 209
             N  R+     V  A  G+ D V  + ++S+  K +   +      DL  + + +   L
Sbjct: 12  PVNRNRVARAMFVAAASMGISDRVQIETLISQLIKRLEKPVGLPGMEDLLPSDLKAPAVL 71

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              +           ++ + +EVL    K  Q     + +   P      ++  +KA   
Sbjct: 72  ATDDE----------IDIMVKEVLDAGNKDKQNQIETQAKEEEPMPVKVQVKSEMKADAR 121

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL 328
            E +                        + +L  RY      G   E  +  F RVA  +
Sbjct: 122 TEGL------------------KLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTI 163

Query: 329 ALKETEKEK------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           A+ E           R  EF+NL++   F+ ++PTL N+G    QLS+CF+  V D +  
Sbjct: 164 AMGELIYNPKADVRSREDEFFNLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIES 223

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A++  AM+ K  GG G  ++ +R     +  T G + G + F++  +     + QGG
Sbjct: 224 IFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGG 283

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA  A L   H D+ +F+    +  D      + N +  I D FM+ V     + L 
Sbjct: 284 TRRGANMAILSIDHPDIMKFV----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLL 339

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                              +V   ++A  ++ K++ M ++TG P I 
Sbjct: 340 NPH---------------------------NGEVVSSLNASEVFNKIVHMAWKTGDPGIV 372

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDY 618
           F D  N  +P   +G + S+N C E  L         CNLGSINL          N  DY
Sbjct: 373 FIDRINAYNPTPQLGRIESTNPCGEQPLLPY----ESCNLGSINLSRMVTVSGGQNTVDY 428

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            KL+  I++AVR LDNVID+N   + + ++     R IGLG+MGF   L  L +PY S  
Sbjct: 429 KKLSRVIKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGVMGFADMLLELGVPYNSEN 488

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           ++++A+E M F++  A   S ELA ERG + +++GS++++   P                
Sbjct: 489 SIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSGRP---------------- 532

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG- 797
                              MRN++C  IAPT T++ I G S  I+P +   + ++ + G 
Sbjct: 533 -------------------MRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGT 573

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
               VN +     K+   + E +I  L    G+  +   +P D K +  TA +I P W +
Sbjct: 574 KMIEVNPYFERAAKEGGYYSEELIKSLAE--GAHLDEVDVPQDAKDLFVTAHQIVPEWHV 631

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  QK  D A S  +     +G+  +  +Y+ A    LK     R  S      ST 
Sbjct: 632 RIQAAFQKCTDNAVSKTVNFSRDAGECDVAEVYKMAHASNLKGITIYRDGSREDQPMSTG 691

Query: 917 KGVDGKLNAVPVTDPNSSTHS 937
           K  +         +PN     
Sbjct: 692 KAENKIETPAVAVNPNLMPRK 712


>gi|299779175|ref|YP_003734369.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           IME08]
 gi|298105904|gb|ADI55548.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           IME08]
          Length = 755

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 181/788 (22%), Positives = 313/788 (39%), Gaps = 70/788 (8%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
              +++    G    F+++++  ++   C G   +    +  E   ++ DG++  D++  
Sbjct: 2   EEIMQVQKSSGVSQDFDAQKIIKVLTWGCEG-TQIDPYELYEEIKSHLRDGMTTKDIQNL 60

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
            +  +  LI  +EP+Y  V A+ L+  LR+EV      +            + ++    +
Sbjct: 61  TVKVAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPR-----------SFIDHISYCV 109

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQ 318
            EG     L       ++ +L + +K+ERDF   Y G   L ++Y       G   E PQ
Sbjct: 110 NEGKYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQ 169

Query: 319 AFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
              M + M L  +E   +    + FY+ +S+      TP +  + T   Q SSC +    
Sbjct: 170 FAIMCIGMALHQEEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAG 229

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R  G+ I     K  GVIPF K       +
Sbjct: 230 DSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKS 289

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA  AY   WH++VE  L L+ N G D  R   M+    + DL M+R  +N 
Sbjct: 290 CSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKND 349

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
             TLFSP E+S        E +  +      A++      ++I A  L+   +T    T 
Sbjct: 350 YITLFSPHEMSGELYHSYFEDQDRFRELYEAAEKDPSIRKKRIKARDLFELFMTERSGTA 409

Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-- 614
             +  F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N  
Sbjct: 410 RIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNFD 469

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D DK+       VR LDN++D   + + +A K     R +G+G+  + + L      Y
Sbjct: 470 WQDQDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASY 528

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
              +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D
Sbjct: 529 E--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKID 583

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           ++A        W  L++ +   G+RNS   A+ P  + + +   +  I+P    + +K +
Sbjct: 584 QIAAPNYV-CDWTSLREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKES 642

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G+F  V   +                                +  + ++  A+ +   
Sbjct: 643 KEGNFRQVVPNV--------------------------------EHNQGLYDYAWTLAKK 670

Query: 855 W---LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY-- 902
                +       KW+ Q+ S N Y D       +     +       W  G K  YY  
Sbjct: 671 GNKPYLTQVVIMLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLLYFWYYGGKNLYYHN 730

Query: 903 LRSRSATS 910
            R  S T 
Sbjct: 731 TRDGSGTD 738


>gi|326536453|ref|YP_004300884.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage 65]
 gi|312262799|gb|ADQ53055.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage 65]
          Length = 751

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/792 (23%), Positives = 320/792 (40%), Gaps = 81/792 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G    F+  ++  +V+ AC GL+      +L      + +G+S  D++  +I +
Sbjct: 4   TVLKSSGITEEFSFDKIFKVVDFACQGLEA-DPHTILEAAKPAIMEGMSTKDIQKLVIKA 62

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  LI   EP+Y  V  R  +  LR++V                     ++    +  G 
Sbjct: 63  AVDLISVDEPDYQYVAGRLTMYALRKKVYNQFDPPHI-----------YDHVKGLVASGH 111

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
             R L     + +   L   + + RD  F Y G     ++Y +    NG+  E PQ  +M
Sbjct: 112 YDRDLIYKYSEKEYEILQGIIDHTRDMNFTYAGAMQYKEKYLVKDRSNGTIYETPQFAYM 171

Query: 323 RVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
             AM L  +E   ++ +  ++FYN  S+F     TP L    T   Q SSC      D L
Sbjct: 172 LQAMCLHQEEDVSKRLEYVIDFYNAASNFEISLPTPILSGVRTPTRQFSSCVKIESGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    +          G+G +   +R  G+ I        GVIPF K       + +Q
Sbjct: 232 ESIGETSKAIMKYISRRAGIGINGGAIRAEGSRIRSGEVSHTGVIPFWKHFTTGVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R G+       WH++VE+ L L+ N G +  R  +++    I   F++R+ ++   T
Sbjct: 292 GGVRGGSGNINYPMWHLEVEKLLVLKNNKGTEETRIRNIDYTVHINKFFIERLKEDGYIT 351

Query: 501 LFSPDE-----VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           LFSPD        D +D    +F   Y+  E      +    ++I A  L+  MLT    
Sbjct: 352 LFSPDIDNGLLYKDFYDSDSSKFIERYKKLEMNHVIRK----KRIKAADLFTTMLTERAG 407

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETAVCNLGSINLLA 609
           TG  +  F D  N ++P  ++  +  +NLC EI       +    EE A+C L +INL  
Sbjct: 408 TGRIYAMFVDNVNKQTP--YIEPIKMTNLCVEIKSSRHNPMADKDEEIALCTLSAINLGK 465

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                           R  VR LDN++D   + ++ A+K     R++G+G++     L  
Sbjct: 466 IKTT-----SDYIRLSRIIVRALDNLLDYQDYPVKAAEK-AKKRRSLGIGVVNLAYFLAK 519

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             + Y SPEA+ +  E  E I F  I AS+ELA+ERGA      + W +G+ PID     
Sbjct: 520 NFVNYNSPEALALVHEHFEAIQFSHIRASMELAKERGASEWHDRTKWSKGLLPIDWYNKN 579

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +    L      +  W+ L+  +   G+RN    A  P+ + + +   +  ++P    L
Sbjct: 580 VD----LLTPNVLKQDWEWLRTEILKYGLRNDTLTAQMPSESSSQLLNATNGVEPVRALL 635

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
             K++  G F  +                              +++ + D+ + + A   
Sbjct: 636 STKASKDGAFNQLVP----------------------------DVDILSDEYQTLWAMVR 667

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL-YLD------EPSGKKLDFIYRQAWLMGLKTTYY 902
           E      +   +  QK+ DQ  S+N  Y+       +     +      A   GLK  YY
Sbjct: 668 ENGMTGYLSICAVIQKFFDQGISVNTSYIPQSYKSGKVPVSVMLKDLVFAQKYGLKAMYY 727

Query: 903 --LRSRSATSVE 912
              R  + + +E
Sbjct: 728 HNTRDGNESDIE 739


>gi|116326447|ref|YP_803167.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32]
 gi|115344040|gb|ABI95049.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32]
          Length = 754

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 187/792 (23%), Positives = 323/792 (40%), Gaps = 62/792 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              +   KW+ Q+ S N Y D       +     +       W  G+K  YY  +R  + 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735

Query: 911 VEKSTLKGVDGK 922
            +   ++    +
Sbjct: 736 TDDYEIETPKAE 747


>gi|113951988|gb|ABI48928.1| NrdA [Enterobacteria phage T2H]
          Length = 754

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 187/792 (23%), Positives = 323/792 (40%), Gaps = 62/792 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              +   KW+ Q+ S N Y D       +     +       W  G+K  YY  +R  + 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735

Query: 911 VEKSTLKGVDGK 922
            +   ++    +
Sbjct: 736 TDDYEIETPKAE 747


>gi|297568305|ref|YP_003689649.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924220|gb|ADH85030.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 755

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/658 (26%), Positives = 289/658 (43%), Gaps = 78/658 (11%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYN 344
            F    + +L  RY      G  +E PQ    RVA  +A  E         E  A+EFY 
Sbjct: 20  KFSANAMTVLKRRYLKKDEQGKVLESPQRMLWRVASTIANSERLYDATADTEALAMEFYR 79

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   FM ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  +
Sbjct: 80  LMAELDFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSF 139

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ 
Sbjct: 140 SRIRPKNDVVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIK 199

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           ++     D    H+ N +  I D FM+ + +N  + L +P                    
Sbjct: 200 VK----SDLDVLHNFNLSVAITDEFMRALAENGDYALINPR------------------- 236

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     ++ R  +A  L+R+++   + +G P + F D  N  +P    G + S+N 
Sbjct: 237 --------NGEIVRYQNAAKLFRQIVKQAWLSGEPGVVFIDRINAENPTPEAGEIESTNP 288

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL     + + DY++L   + TAV  LDNV+DIN + + 
Sbjct: 289 CGEQPLLPY----ESCNLGSINLANMVKDGKLDYERLGYCVDTAVHFLDNVVDINNYPLP 344

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++    +R IGLG+MGF   L  L IPY+S EAVE+A+  M FI   A+ AS+ L + 
Sbjct: 345 EIEQVTKQNRKIGLGVMGFADLLVQLEIPYSSQEAVELAEALMRFIDERALKASIALGKS 404

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA+ +F  S++ +                                       +RN+   
Sbjct: 405 RGAFPNFPDSIYGRQDP---------------------------------KTPVRNATRT 431

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISD 823
            IAPT TI+ + G S  ++P +   +++  M   +   VN       K+   +   ++  
Sbjct: 432 TIAPTGTISILAGCSSGVEPLFAVAFLRRVMDNDELFEVNPRFEKIAKEEGFYSHELVKQ 491

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
           +  H+G++  +E IP   ++I  TA +I P   I   +  Q+  + A S  +    + + 
Sbjct: 492 IA-HNGTLAGLEEIPAKYRRIFETAHDITPENHIAIQASFQRHTNNAVSKTINFPHQATE 550

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +++   Y  A+ +  K     R     +   +  K       AVPV            
Sbjct: 551 EEVRQAYLLAYELNCKGMTIYRDGCRENQVLNIGKTDKKAAAAVPVLPQKPFKRDRPA 608


>gi|326804584|ref|YP_004327455.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella
           phage Vi01]
 gi|301795234|emb|CBW37952.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella
           phage Vi01]
          Length = 758

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/785 (22%), Positives = 320/785 (40%), Gaps = 77/785 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + I+  DG+ + F+ ++L  ++E AC GL+ VS   V + +     D +    ++  +I
Sbjct: 1   MINIIKRDGSSVPFDIEKLHTVLERACEGLEGVSVSEVEAASKIQFTDNMKTERIQDIII 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++ TLI  E PNY  V AR     LR+ V                     + F + I++
Sbjct: 61  QAAATLISVEKPNYQYVAARLKSYDLRKVVYGRYKPPHLL-----------DIFAKNIKQ 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN----GSRIEMPQ 318
           GV  R   E     +   L   + ++RD  F +  +  L  +Y L           E PQ
Sbjct: 110 GVYDREFLELYTKEEFEELNTVINHKRDKNFTWAAMGQLTQKYLLRDRSADSKVYYETPQ 169

Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             +M +AM L     +  +     +FY   S+  F   TP +    T   Q SSC L   
Sbjct: 170 VMYMAIAMALFSAWDKETRLTMVKKFYEYASTGKFSLPTPIMSGVRTPTRQFSSCVLIKT 229

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I    +          G+G D   +RG+G+ I        G++PF+K       
Sbjct: 230 GDTLDSINATAKSIVDYVSKRAGIGFDVGAIRGIGSPIRKGEMVHTGLVPFIKYLTGALK 289

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           + +QGG R G+   Y+  WH   ++ + L+ N G +  R   ++    I  +  +R+   
Sbjct: 290 SCSQGGIRGGSATCYIPIWHYQFDDVVVLKNNRGLEENRERRIDYGIQINRVMFERLVNK 349

Query: 497 AGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
               LF P +  D+++ +     +F   Y+N  + AD G ++  +K++A  +++ +L   
Sbjct: 350 QPLYLFDPKDNRDMYEAFFADVDKFRTLYDNMVKAADAGLVR-AKKMNAEEVFQMLLDQR 408

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610
            +TG  +I F D  N  SP  ++  ++SSNLC EI L +   +      G I L      
Sbjct: 409 SDTGRIYIAFVDHMNQYSPF-NLDTIYSSNLCLEIALPTREFQQYDDEEGRIALCTLASF 467

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                 D  ++       V  LD +++   +   +A+ +   +R +G+G++         
Sbjct: 468 NLTAFEDPTEMEDVAYVLVSALDMLLEYQDYPARQARLAVEEYRPLGIGVVNVAHFFAKN 527

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              Y SP  +E+ D+ M  + F+ + AS  LA + GA    K ++   G    D   L  
Sbjct: 528 FTGYGSPVGLELLDKWMAHLHFYLVKASNRLAMKFGACK--KETIHRSGKITADLQPLPL 585

Query: 731 E--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +     +        L WD LK  ++  G+RN+  +AIAPT + + +   +  I+P    
Sbjct: 586 DILPNGKKPEGMAYGLDWDGLKDSLRCHGIRNATLLAIAPTESSSQVLNATNGIEPPKGL 645

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + +K +  G +  +   +                                + L  ++   
Sbjct: 646 ISIKGSKDGVYKQIVPDV--------------------------------ETLGPLYDLK 673

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-----------EPSGKKLDFIYRQAWLMGL 897
           + +  +  +++A+  Q+W+DQ+ S+N + D               + +   Y   W  G 
Sbjct: 674 WNLSCIDYLKTAAVAQRWVDQSISVNTHYDPEKFPDGKIPRSLMMQDILSFYM--W--GG 729

Query: 898 KTTYY 902
           KT YY
Sbjct: 730 KTLYY 734



 Score = 41.4 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 33/103 (32%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    FD  K+   + +A           S+   +    +      +   + K
Sbjct: 2   INIIKRDGSSVPFDIEKLHTVLERA----CEGLEGVSVSEVEAASKI------QFTDNMK 51

Query: 89  SALIVHIEDIQDQ----------VECSLMQSGHHKIT---REY 118
           +      E IQD           VE       +  +    + Y
Sbjct: 52  T------ERIQDIIIQAAATLISVEK----PNYQYVAARLKSY 84


>gi|323487826|ref|ZP_08093084.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
 gi|323398560|gb|EGA91348.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
          Length = 761

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 229/806 (28%), Positives = 366/806 (45%), Gaps = 142/806 (17%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +L+++   +   +P++  V A      L ++       + ++ +  E    + +     
Sbjct: 46  QSLLYALNHITMDQPDWTYVAAELYASDLYKKA-----AEHREYSASEKYGDFYKLVHEL 100

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQ 318
            + G+ ++ L  S    ++  L  +++ ERD  F Y+GL +L DRY      G   E+PQ
Sbjct: 101 TQVGIYSKELLFSYSQEEITELGQEIEPERDLLFNYIGLFLLADRYLAKDYEGRLFELPQ 160

Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             F+ +AM L   E   ++ +   E Y  +S  +   +TPTL N+G    QLSSCF+ TV
Sbjct: 161 ERFLVIAMTLMQNEPKEQRLELVKEAYWAMSHLYMTVATPTLSNAGKSFGQLSSCFIDTV 220

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L GI+    + A L+K  GG+G  +  VR LG+ I      S GV+P++++ NDTAV
Sbjct: 221 DDSLDGIYLNNWDIARLSKDGGGIGIYYGKVRALGSDIKKFKDNSSGVVPWIRLLNDTAV 280

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEE-FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
           +V+Q G+R+GAV  YL+ +H D+   FLDL+ N GD+RR+ HD+ T   IPDLFM+R+ +
Sbjct: 281 SVDQLGQRQGAVAIYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVSIPDLFMERLQE 340

Query: 496 N-------AGWTLFSPDEVS-------------DLHDLYGKEFEIAYENYERQADRGEIK 535
                     W  F P +V               L D Y ++    + +  ++A    + 
Sbjct: 341 KDENGRSIGEWHTFCPHQVKRVMGWKDANGNALGLEDFYDEKDTKYFSDKYQEAVDHLLL 400

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-----VGVVHSSNLCTEITL 590
             +   A+ +  +++    ETG P++ ++D  N ++P +H     +  ++ SNLCTEI  
Sbjct: 401 PRKTYRAMEIMARIMVSQLETGTPYMFYRDEVNRQNPNKHTRGRGLTSIYCSNLCTEIMQ 460

Query: 591 NSS--------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           N S                      +  VCNL SINL     +       L   +    R
Sbjct: 461 NMSATTIVKEYTDEDGNLVMIRKPGDFVVCNLSSINLPRAVKSGV-----LERLVPIQTR 515

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNVID+N  ++ +A+ +N  +RAIGLG  G+   L L  I + S +AVE AD+  E I
Sbjct: 516 MLDNVIDLNTISVGQAEVTNKKYRAIGLGTFGWHHLLALEGIHWESEKAVEFADKLYEEI 575

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           ++  I AS++LA+E+GA+S F GS W  G              +       +   W++L+
Sbjct: 576 AYQTIRASMQLAEEKGAFSQFSGSEWHTG--------------EYFERRNYTSERWNDLQ 621

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           ++V T G+RN   MA+AP ++ A I G +  IDP Y   Y +   +  F V         
Sbjct: 622 QQVATTGVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEYAEEKKNFKFKVTAP------ 675

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQ 869
                                     +       +  +   +D  W I   + RQ+ IDQ
Sbjct: 676 -------------------------DLDHHTYDFYRRSRHVLDQKWSIRQNAARQRHIDQ 710

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + S N Y+      K+L  ++ +AW   LKTTYY+RS S   +E                
Sbjct: 711 SISFNFYVPHTIKAKELLDLHLEAWKQNLKTTYYVRSTSQAEIE---------------- 754

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               ECE CQ
Sbjct: 755 --------------------ECEACQ 760


>gi|73748195|ref|YP_307434.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides
           sp. CBDB1]
 gi|73659911|emb|CAI82518.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 761

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 180/660 (27%), Positives = 284/660 (43%), Gaps = 85/660 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFY 343
                  + +L  RY      G   E  +  F RVA  +A+ E           R  EF+
Sbjct: 20  LKLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFF 79

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           NL++   F+ ++PTL N+G    QLS+CF+  V D +  IF A++  AM+ K  GG G  
Sbjct: 80  NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R     +  T G + G + F++  +     + QGG R+GA  A L   H D+ +F+
Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFV 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
               +  D      + N +  I D FM+ V     + L +P                   
Sbjct: 200 ----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLLNPH------------------ 237

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V   ++A  ++ K++ M ++TG P I F D  N  +P   +G + S+N
Sbjct: 238 ---------NGEVVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL          N  DY KL+  I++AVR LDNVID+N
Sbjct: 289 PCGEQPLLPY----ESCNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVN 344

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + +  +     R IGLG+MGF   L  L +PY S  ++++A+E M F++  A   S 
Sbjct: 345 KFPLPQIDEMTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSS 404

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA ERG + +++GS++++   P                                   MR
Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
           N++C  IAPT T++ I G S  I+P +   + ++ + G     VN +     K+   + E
Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +I  L    G+  +   +P D K +  TA +I P W +   +  QK  D A S  +   
Sbjct: 490 ELIKSLAE--GAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547

Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             +G+  +  +Y+ A    LK     R  S      ST K  +         +PN     
Sbjct: 548 RDAGECDVAEVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPNLMPRK 607


>gi|113951999|gb|ABI48936.1| NrdA [Enterobacteria phage T6]
          Length = 754

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/782 (24%), Positives = 319/782 (40%), Gaps = 64/782 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LRSRSA 908
              +   KW+ Q+ S N Y D       +     +       W  G+K  YY   R  S 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735

Query: 909 TS 910
           T 
Sbjct: 736 TD 737


>gi|34419510|ref|NP_899523.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio
           phage KVP40]
 gi|34333191|gb|AAQ64346.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio
           phage KVP40]
          Length = 741

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/783 (24%), Positives = 317/783 (40%), Gaps = 76/783 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G    F   +L  ++ +AC     +    +L+     + DG++  D++ A I 
Sbjct: 1   MLVVKSSGITEEFEESKLMRVLSDACKN-TTIDPHQLLARVKAQLSDGMTSKDIQKAAIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  +EP+Y  V AR  +  LR++V       P           + +   R     
Sbjct: 60  IAADSISVEEPDYQYVAARLAMYGLRKDVYGQFDPIP-----------FKQLIERNTAIE 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFF 321
           V    + E   D +L YL + +K+ERDF F Y G+    ++Y     G+    E PQ  +
Sbjct: 109 VYDSEILEKWSDSELEYLESQVKHERDFDFAYAGVMQFKEKYLCKNRGTGAIYETPQYAY 168

Query: 322 MRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M +AM L  +E   + K  ++FYN +S+      TP +    T   Q SSC      D L
Sbjct: 169 MLIAMCLHQEEKYDRLKHVIDFYNAVSTQKLSLPTPIMAGVRTPTRQFSSCVKIESGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I    +          G+G +   +R  G+ +     +  GVIPF K       + +Q
Sbjct: 229 RSINKVSEAIVDYISKRAGIGVNGGAIRAEGSVVRAGEIRHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA       WH++VE+ L L+ N G +  R   ++ +  I  L M+R+  N   T
Sbjct: 289 GGVRGGAATLTYPIWHLEVEKLLVLKNNKGVEENRIRHLDYSVSINRLMMQRLVNNEYIT 348

Query: 501 LFSPDE----VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSPDE    +   +    +EFE  Y   E      +    ++I A  L+         T
Sbjct: 349 LFSPDERHGALYGEYHTNPEEFERLYLELEADPKVRK----KRIKATELFSIFGQERSST 404

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G  +  F D  N +SP  ++  +  SNLC EI L +    T+   +    L A+      
Sbjct: 405 GRIYPIFVDNLNAQSP--YIEAIKQSNLCMEIALPTYPLGTSYEEIALCTLAAYNLGAIE 462

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
              + A      +R LDN++D   + +E A+K     RA+G+G+  F   L    + Y S
Sbjct: 463 SPSEFARLAPIVIRALDNLLDYQDYPVEAAEK-AKYRRALGIGITNFAYFLAKNFVGYDS 521

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
                +  E ME +S++ I AS+ LA+ERGA    + + W +G  PID      +     
Sbjct: 522 SAKY-LVHEWMEAMSYYNIQASMMLAKERGANKWHRKTRWAKGQLPIDWYNKNVDK---- 576

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
            +     L W+ L+  V   GMRN    A  P  + + I   +  I+P    +  K +  
Sbjct: 577 LVKPNYNLDWEALRADVIRYGMRNDTTSAFMPCESSSQISNSTNGIEPPRGLVSTKQSKD 636

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DP 853
           G F  V   +                                D LK  +  A+++   D 
Sbjct: 637 GVFNQVVPEV--------------------------------DLLKDEYGLAWKVCEKDN 664

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LR 904
              +   +  QK++DQ+ S N Y D       +   +++          G+KT YY   R
Sbjct: 665 FGYLTLVAIMQKFVDQSISANQYYDPSKFPNGKIPMERIFEELAFCSHYGIKTLYYSNTR 724

Query: 905 SRS 907
             +
Sbjct: 725 DGA 727


>gi|332184135|gb|AEE26389.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Francisella cf. novicida 3523]
          Length = 590

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 192/690 (27%), Positives = 286/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQNYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FMK V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMKAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S IR  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIRDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S +A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQLHRVPFESQKAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|73988081|ref|XP_862175.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large
           subunit (Ribonucleoside-diphosphate reductase M1
           subunit) (Ribonucleotide reductase large chain) isoform
           3 [Canis familiaris]
          Length = 491

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 186/505 (36%), Positives = 285/505 (56%), Gaps = 21/505 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                     ++  +   L + + Y+RDF++ Y G + L   Y L ING   E PQ   M
Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     E    A+E YNLLS   F  ++PTLFN+GT  PQLSSCFL ++ DD + 
Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L++ A+++K +GG+G   + +R  G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH+D+ EFLDL+KNTG + +R  D+  A WIPDLFMKRV  N  W+
Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           L  P+E   L +++G+EFE  YE+YE+Q      +V + + A  LW  ++    ETG P+
Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           + +KD CN +S QQ++G +  SNLCTEI   +S +E AVCNL S+ L  +  + + +D+ 
Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIE 644
           KLA   +  VR L+ +IDIN + + 
Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVP 489


>gi|299780592|gb|ADJ39954.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage T4T]
          Length = 754

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 188/782 (24%), Positives = 318/782 (40%), Gaps = 64/782 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    +  G
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNAG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LRSRSA 908
              +   KW+ Q+ S N Y D       +     +       W  G+K  YY   R  S 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735

Query: 909 TS 910
           T 
Sbjct: 736 TD 737


>gi|225619346|ref|YP_002720572.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira
           hyodysenteriae WA1]
 gi|225214165|gb|ACN82899.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 773

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 213/810 (26%), Positives = 361/810 (44%), Gaps = 93/810 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           I+  DG    FN ++L  +++ A  G ++  +  +L      + D +    L   LI ++
Sbjct: 12  IIKRDGREEPFNEEKLRKVIDWATEG-KEAFTNQLLEGLNIKINDKMKIEVLYDELINTA 70

Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +I    P Y  +  +  L K+ +E                       +  + I+  + 
Sbjct: 71  VNMISPLYPMYDTIAEKLYLMKIYKETCG--------LKKIGSYPHIKNFLKKGIKYKIY 122

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
            + + +   D +L  + + +   RD  F Y GL I Y +Y  +I   ++E+PQ  +M  A
Sbjct: 123 DKDIIQLFTDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITYMVAA 182

Query: 326 MGLALKETE--------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
           M     +                + K     Y++LS      +TP + NS T   QL+SC
Sbjct: 183 MFSFYDDYYKGENKDKLEISKSERLKYIKRTYDMLSRHEVTFATPRIANSMTIKAQLASC 242

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            L T  DD + +       A+ +K+SGG+  D + +R  G+ I    G+S G IPF+K  
Sbjct: 243 ILNTPADDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPFIKRV 302

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             T  + NQGG RKGA       WH+DV + + L+   G +  R   +  +  I ++F +
Sbjct: 303 EQTISSFNQGGVRKGACVVTFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNIFRE 362

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV ++   TLF P E   L++ YG++F +AY  YE ++   + K+     A  L  ++L 
Sbjct: 363 RVNKDGYVTLFDPKETPLLNEEYGEKFNVAYIYYESKSSIRKKKIK----AKDLLFQILK 418

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595
           +  ETG+ ++TF D  N          V +SNLC EI + S                   
Sbjct: 419 VRQETGNLYLTFVDNINE--QNMVNRFVGASNLCQEIVIPSYPSKLIKEKYVINEDGEYE 476

Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                   E  +CNL S+NL    +   F  +K  S   T +R  DN+ID   + +++ +
Sbjct: 477 IIQRKKSGEIGICNLVSVNL---MSWVNFSPEKKKSFCYTLLRGCDNIIDTQFYPVKEGE 533

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +N  +R IG+G++ + + L    I Y   EA+E  ++  + + +H   AS  LA+ERG 
Sbjct: 534 IANKKNRPIGIGVINYANLLASNKIKYTDKEALEFTNKVFDDLYYHIYEASNILARERGP 593

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y +F  S W +G+ P     L    ++ L +    +  WD+L + +K  G+R S   AIA
Sbjct: 594 YKTFNESKWKEGLTPFHISLLNNNKKNNLNV-SVDKEKWDKLAENIKNNGVRFSFHGAIA 652

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTAT       ++SI+P     +++     +       LV  +K+               
Sbjct: 653 PTATSGKSVSATESIEPIVDLFFIE-----EGIQTLPSLVPNIKKN-------------- 693

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                         ++ +   + I    +IE A+ RQ++IDQ+QSLNLY  +P S K+L 
Sbjct: 694 --------------REYYERCWNIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSAKELW 739

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              + A  +GLKT YY+++   ++ E   +
Sbjct: 740 DDIQYAMDLGLKTLYYMKT-PKSNFELEEV 768


>gi|291287794|ref|YP_003504610.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884954|gb|ADD68654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 761

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/668 (25%), Positives = 283/668 (42%), Gaps = 82/668 (12%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK 337
             +   L    D       + +L  RY     +G  +E P   F RVA+ +A  +   +K
Sbjct: 4   KEIEKALSQTPD--LTKNAITVLEKRYLKRDISGKPVEKPIDMFRRVALNIAEADKNYDK 61

Query: 338 RAV------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391
            A        FY  +++  F+ ++PTL N+G    QL++CF+  V D L  IF A++  A
Sbjct: 62  DADILSTATAFYEQMAALKFLPNSPTLMNAGRELQQLAACFVLPVDDSLEAIFEAVKNTA 121

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           ++ K  GG G  ++ +R     +  T G S G + F+ V +     + QGG R+GA    
Sbjct: 122 LIHKSGGGTGFSFSRLRPKDDVVKTTKGVSSGPVSFMTVFDAATETIKQGGTRRGANMGI 181

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+ EF+       +D+ +  + N +  I + FM+ V  +  + L++P       
Sbjct: 182 LRVDHPDIMEFI----YAKEDKTKLTNFNLSVGITEKFMQAVLNDTDYDLYNPKT----- 232

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                  K   K+ A  ++  M+ + +E G P I + D  N  +
Sbjct: 233 ----------------------GKTAGKLKAKEVFDTMVQLAWEGGDPGIVYLDRINAEN 270

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           P    G + S+N C E  L         CNLGSINL  +  + + D++ L  TI  AV  
Sbjct: 271 PTPKEGDIESTNPCGEQPLLPY----ESCNLGSINLGKYVKDGKIDWEDLEKTIEVAVHF 326

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID+N + I++       +R IGLGLMG+   L +L IPY + EA ++A++ M+FI 
Sbjct: 327 LDNVIDMNKYPIQQINDQTKRNRKIGLGLMGWADMLAMLAIPYNTDEATDLAEKVMQFIR 386

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
                 S  LA  RG + SFK S++ +  F                              
Sbjct: 387 DKGREKSSALAVIRGDFPSFKDSIYPKMGFKN---------------------------- 418

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNEL 810
                 MRN+    IAPT TI+ I   S  I+P +   + +  M +     V+    +  
Sbjct: 419 ------MRNATITTIAPTGTISIIGSCSSGIEPYFAIAFYRQVMDNNKLVEVSPVFKDIA 472

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K+     + ++  +    G+   +  +P+  ++   T+ EI P W  +  +  QK+ D A
Sbjct: 473 KREGFLSDELLEKVAET-GTAHGLSMVPEKWQEAFVTSHEITPFWHTKMQAAFQKYTDNA 531

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAVPV 928
            S  +   +E + + +   Y  ++ +G K T   R  S T  V     K  + +  A   
Sbjct: 532 VSKTVNFPNEATIEDVKKTYLLSYNLGCKGTTIYRDGSRTGQVLNVGTKEKEAQPEATAE 591

Query: 929 TDPNSSTH 936
             P     
Sbjct: 592 FTPKPRPK 599


>gi|254374387|ref|ZP_04989869.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548]
 gi|151572107|gb|EDN37761.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548]
          Length = 590

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSNVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|320161749|ref|YP_004174974.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1]
 gi|319995603|dbj|BAJ64374.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1]
          Length = 868

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/671 (25%), Positives = 297/671 (44%), Gaps = 40/671 (5%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-----EKRAVEFYNL 345
                  Q+L  RY    + G+  E     F RVA  +A  E          RA EFY L
Sbjct: 28  ELTENARQVLIRRYVRRNDDGTPAESVDEMFWRVAYNIAKVEVSFGNPDVMTRAREFYIL 87

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGGLG 401
           L+S  F  ++PT   +GT   QL++CF+  + DD+     GIF  L++ A++ +  GG G
Sbjct: 88  LTSKKFFPNSPTFTGAGTPLGQLAACFVLPIVDDMGRDSMGIFQTLRDAALIQQTGGGNG 147

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G  +  ++G++ G + FL+V +     + QGG R+GA    L   H D+EE
Sbjct: 148 FSFSRLRPKGTVVKSSSGQATGPVGFLRVYDHAFGEIAQGGTRRGANMGVLRVDHPDIEE 207

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  +     D     + N +  I D FM+ V ++A W L  PD     +  +    E A
Sbjct: 208 FITCKT----DENAITNFNISVGITDAFMRAVKEDAEWELRFPDVTDPRYRTFRGTLEQA 263

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                 + +   I+ ++K+ A  L+ K++      G P + F D  N  +P  H+  + +
Sbjct: 264 ------EQEGIPIRTYKKVRARDLFNKIVKQAHHNGEPGVLFLDAANRSNPVPHLYQLEA 317

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           +N C E  L         C LGS+NL  H   N   D++ L  ++  +   LD+V++ N 
Sbjct: 318 TNPCGEQYLGPYEN----CCLGSVNLAQHLGDNGTVDWEGLRQSVVLSTIFLDDVVEANA 373

Query: 641 H--TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   + + +++    R IGLG+MG    ++   I Y SPE  E A + MEFI +HA+  S
Sbjct: 374 YVPAVPQLREAAMRARRIGLGIMGLADLMYHCGIRYGSPEGQEFAAQVMEFIRYHAMQTS 433

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT-SRLPWDELKKRVKTIG 757
           +ELAQ+RGA+ +  GS++D    P +      +       +     + WD + + ++  G
Sbjct: 434 IELAQQRGAFPAIHGSIYD----PENLKWAPPQSIVPYTHDYGRPPIDWDIITEGIRKHG 489

Query: 758 MRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSN----MSGDFTVVNSFLVNELKQ 812
           +RN+    IAPT TIA + G      +P +   Y++              +      + +
Sbjct: 490 IRNAAQTTIAPTGTIATVAGCEGYGCEPVFALAYIRHVNDNGKDLQLIYASPAFEKAIAR 549

Query: 813 RDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
             +  E     L     +G+  +I+ +P+ ++ +   + +I     +   +  Q ++D +
Sbjct: 550 AGIEAEKRQEILEQIMREGTCQHIKDLPEAIRNVFVVSADITAEEHVRMQAALQAFVDNS 609

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  +   E  + + +   Y  AW +G K      + S   V   TLK  + K       
Sbjct: 610 LSKTINFPEGATEEDVATAYMLAWELGCKGITVYVTGSREKVVLETLKTAEKKKGETDEK 669

Query: 930 DPNSSTHSLGI 940
           +    +     
Sbjct: 670 EEVEKSPVPQP 680


>gi|310722638|ref|YP_003969461.1| aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage phiAS5]
 gi|306021481|gb|ADM80015.1| aerobic ribonucleoside diphosphate reductase large subunit
           [Aeromonas phage phiAS5]
          Length = 744

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 191/782 (24%), Positives = 310/782 (39%), Gaps = 84/782 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G    F   +L  I+  A  G   +S K +L     ++ +G+S   ++   I 
Sbjct: 1   MLVRKSSGITEEFTVGKLFKILSFATEG-TRISPKEILDGIMPSITEGMSTKRIQEIAIK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  E  +Y  V AR  +  LR++V         K            +    + +G
Sbjct: 60  FAADRISIEQSDYQYVAARLQMYALRKQVYNQFDPIHLK-----------PHVMDLVMDG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
                L     D +   L   +K++RDF   Y G+    ++Y       G   E PQ  +
Sbjct: 109 KYDPELCSKWTDEEFEELNAYIKHDRDFNLAYAGVMQFKEKYLAKDRSTGEVFETPQMLY 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M VAM L  +E  ++ ++   FY++ S       TP L    T   Q SSC      D+L
Sbjct: 169 MLVAMCLHQEEKTDRLQKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIECGDEL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  G+IPF K       + +Q
Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE+ L L+ N G +  R   ++    I  L ++R+  +   T
Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKLMLERLKNDDYIT 348

Query: 501 LFSPD----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSPD    E+ DL+     +F   YE  E +       + ++I A  L+         T
Sbjct: 349 LFSPDVQKGELYDLYYSDPVKFRELYEMLENEPFL----IKKRIKASELFNLFAQERSGT 404

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------ETAVCNLGSINLLAH 610
           G  +  F D  N  +P  +   +  SNLC EI L +         E A+C L + NL A 
Sbjct: 405 GRIYPMFIDNVNSATP--YKEPIRQSNLCIEIALPTYPVHRDGTGEIALCTLAAYNLGAI 462

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                  Y+   +  R AVR LDN++D   + + +A  +    RA+G+G+  F   L   
Sbjct: 463 EG-----YNDFLNVARAAVRALDNLLDYQEYPVVQAL-AAKKRRALGIGVTNFAYFLAKN 516

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y+   A ++   +ME + F  I AS+ELA+ERGA      + W  G+ PID      
Sbjct: 517 FVKYSDGSANKLVHRTMEMMQFANIVASMELAKERGASEWHHKTKWADGLLPIDWYNKNV 576

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +      +    ++ W+ L+  +K  GMRN    A  P  + + I   +  I+P    + 
Sbjct: 577 DSI----VPNDLKMDWEWLRGEIKKYGMRNDTLSAFMPCESSSQITNSTNGIEPPRGLVS 632

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K +  G F      LV E++                                 + TA+ 
Sbjct: 633 TKQSKDGVFNQ----LVPEVEMLG----------------------------SEYETAWA 660

Query: 851 ID---PMWLIESASRRQKWIDQAQSLNL-YLDEP------SGKKLDFIYRQAWLMGLKTT 900
           +        ++  +  QK++DQ  S N  Y+           K +     +A   G+K+ 
Sbjct: 661 MAKRGMKGYLDIVAIMQKFVDQMISANTYYVPSIYPGDKLPMKVVLKDMSRAQKYGVKSL 720

Query: 901 YY 902
           YY
Sbjct: 721 YY 722


>gi|238695117|ref|YP_002922311.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE]
 gi|220029253|gb|ACL78188.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE]
          Length = 747

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 187/785 (23%), Positives = 319/785 (40%), Gaps = 78/785 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  
Sbjct: 4   NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +   I  E P+Y  V +   +  LR+ V                   +  +  R I  G 
Sbjct: 63  AADNITVETPDYQYVASNLAMFALRKSVYGQFQPID-----------FYSHIERNIATGK 111

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322
             R + +     ++ YL   + ++ DF   Y G   L ++Y          IE PQ  +M
Sbjct: 112 YDREILQKYSHEEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            + M L  +E   + +  ++FYN +++      TP +    T   Q SSC +    D L 
Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI               G+G +   +R  G+ I     +  GVIPF K       + +QG
Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +    TL
Sbjct: 292 GIRGGAATLYYPIWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351

Query: 502 FSPDEVS----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           FSPD       DL+    + F   YE  E+     + +    + A  L+  +    F TG
Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR----VKAEDLFLAVAIERFNTG 407

Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHF 611
             + TF D  N      ++V  +  SNLC EI L +        E ++C L +  L    
Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNF- 466

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             +  + +++       VR LDN++D   + +E+A  +    R++G+G+  F S L    
Sbjct: 467 --DIENMEEVERIAMVMVRALDNLLDYQDYPVEQAL-TAKKRRSLGVGVTNFASYLADNF 523

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y   +A E   ++ E + +  I ASV LA+E+GA      + + +G  PID      +
Sbjct: 524 FTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPIDWYKKTVD 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 ++    + W+EL++ +K  G+RNS   A+ P  + + +   +  I+P    + V
Sbjct: 582 E----LVDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSV 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K +  G F  V   + N     DL    + + +K  +              K + T    
Sbjct: 638 KGSKEGQFNQVIPNVENNADVIDL----LWTLIKKGN--------------KPYLT---- 675

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYY-- 902
                   A+  QK++DQA S N   D  + K        +      A   GLKT YY  
Sbjct: 676 -------LAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYAN 728

Query: 903 LRSRS 907
           +R  +
Sbjct: 729 VRDGA 733


>gi|111073617|emb|CAL29480.1| ribonucleoside-diphosphate reductase alpha chain [Wolbachia
           endosymbiont of Onchocerca volvulus]
          Length = 609

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 186/680 (27%), Positives = 298/680 (43%), Gaps = 101/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + +E++      G  +L DRY +       E  Q  F+R+A   +  +      A   Y+
Sbjct: 21  INHEKNVKLTSFGKAVLLDRYLIEN-----ESYQDLFIRIASYYSDNKE----HAQRLYD 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 72  YISNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 132 GNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 190

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++ A  + D FM+ V ++  W L SP                   
Sbjct: 191 IRKPTGGDPNRKALNIHHAVIVNDEFMQAVERDLEWDLISPHSN---------------- 234

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV   + A  +W K+L    ETG P+I F +  N   P+ +      + 
Sbjct: 235 -----------KVISTVKARDIWVKILIARVETGEPYIIFLNAINNNKPESYKKLNLDIK 283

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +       ++      I   +R LDNV +   
Sbjct: 284 MSNLCSEITLTTGYDHLNKPRTAVCCLSSVNLEYYEEWKDSEFFIEDIMRFLDNVFEDFI 343

Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +      +    S    R+IGLG+MGF S L    +P+ S  A +      + +   A  
Sbjct: 344 NKAPNEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKRIFKHLREQADI 403

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA+E+GA               +D+  +    R                       
Sbjct: 404 ISKKLAEEKGAC--------------LDAKEINLMER----------------------- 426

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               ++ +AIAPTA+I+ I G  S  I+P   N++ +  ++G F V N FL   L +++ 
Sbjct: 427 ---FTHKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLLAKKNQ 483

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + +  K    TA+E+D  W+IE AS R  +I Q+QS+NL
Sbjct: 484 DNDKVWSSISTNEGSVQHLDFLNEHEKLTFKTAYELDQRWIIEHASDRTPYICQSQSVNL 543

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW   LK+ YY RS S    +K +    +              
Sbjct: 544 FLPPNIHKRYLHKIHMLAWKKNLKSLYYCRSLSIQRADKVSHDISEK------------- 590

Query: 935 THSLGIPSSCTSDTECEVCQ 954
            + +    +     EC  CQ
Sbjct: 591 -NEILHQKTDIDYDECLSCQ 609


>gi|33620590|ref|NP_891805.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49]
 gi|33348057|gb|AAQ15458.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49]
          Length = 747

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 188/785 (23%), Positives = 320/785 (40%), Gaps = 78/785 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  
Sbjct: 4   NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +   I  E P+Y  V +   +  LR+ V                   +  +  R I  G 
Sbjct: 63  AADNITVETPDYQYVASNLAMFALRKSVYGQFQPID-----------FYSHIERNIATGK 111

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322
             R + +     ++ YL   + ++ DF   Y G   L ++Y          IE PQ  +M
Sbjct: 112 YDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            + M L  +E   + +  ++FYN +++      TP +    T   Q SSC +    D L 
Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI               G+G +   +R  G+ I     +  GVIPF K       + +QG
Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +    TL
Sbjct: 292 GIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351

Query: 502 FSPDEVS----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           FSPD       DL+    + F   YE  E+     + +    + A  L+  +    F TG
Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR----VKAEDLFLAVAIERFNTG 407

Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHF 611
             + TF D  N      ++V  +  SNLC EI L +        E ++C L +  L    
Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNF- 466

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             +  + +++       VR LDN++D   + +E+A  +    R++G+G+  F S L    
Sbjct: 467 --DIENMEEVERIAMVMVRALDNLLDYQDYPVEQAL-TAKKRRSLGVGVTNFASYLADNF 523

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y   +A E   ++ E + +  I ASV+LA+E+GA      + + +G  PID      +
Sbjct: 524 FTYE--DANEFTHKTFERLQYALIKASVQLAKEKGACELMHETRYGRGELPIDWYKKTVD 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 ++    + W+EL+K +K  G+RNS   A+ P  + + +   +  I+P    + V
Sbjct: 582 E----LVDPVYEMDWEELRKDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSV 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K +  G F  V   + N     DL    + + +K  +              K + T    
Sbjct: 638 KGSKEGQFNQVIPNVENNADVIDL----LWTLIKKGN--------------KPYLT---- 675

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYY-- 902
                   A+  QK++DQA S N   D  + K        +      A   GLKT YY  
Sbjct: 676 -------LAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYAN 728

Query: 903 LRSRS 907
           +R  +
Sbjct: 729 VRDGA 733


>gi|328954504|ref|YP_004371838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454828|gb|AEB10657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobacca acetoxidans DSM 11109]
          Length = 738

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/663 (26%), Positives = 284/663 (42%), Gaps = 79/663 (11%)

Query: 288 ERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVE----- 341
             D       + +L  RY    + G   E P   F+RVA  +A  +   +  A       
Sbjct: 11  SEDIFLTPNAVTVLKKRYLKKDDHGDVCEQPVDMFLRVAKTIAEVDRCYDPEADIEETTR 70

Query: 342 -FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            FY+L++S  FM ++PTL N+G    QLS+CF+  V DD+  IF A++  A++ K  GG 
Sbjct: 71  CFYHLMASRSFMPNSPTLMNAGRELGQLSACFVLPVDDDISSIFDAIKNTALIHKSGGGT 130

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R     +  T G + G I F+ + +     + QGG R+GA  A L   H D+E
Sbjct: 131 GFSFSRIRPENDRVLSTKGVASGPISFMNIFDVATETIKQGGTRRGANMAILRVDHPDIE 190

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+  +     D+    +++ A  + D FM+ V     + L +P                
Sbjct: 191 KFITCK--NQTDKLTNFNISVA--VTDAFMQAVINGEDFALLNPRTQQ------------ 234

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                            R + A  L+  ++   + TG P + F D  N  +P  HVG++ 
Sbjct: 235 ---------------PVRSVKAAVLFDLIVQSAWSTGEPGLIFLDQVNRGNPIPHVGLIE 279

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           S+N C E  L         CNLGSINL     N   ++  L   +  +V  LDNVID N 
Sbjct: 280 STNPCGEQPLLPY----ESCNLGSINLAQMVKNGAVNFATLKEVVWASVHFLDNVIDANR 335

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             + + +++   +R IGLG+MGF   L  L I Y S  AV++A+E M FI   + +AS E
Sbjct: 336 FPLPQIEEATMKNRKIGLGVMGFADMLLYLGISYNSEAAVKVAEEVMSFIQRESKAASAE 395

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA++RG + +F GS++D G                                         
Sbjct: 396 LAEKRGNFPNFPGSIYDTGNGKGRMRNATTTTIAPTGTI--------------------- 434

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819
                       + I G S  I+P +   +V+  + G +   V+ +  +  ++R  ++  
Sbjct: 435 ------------SIIAGCSSGIEPLFGISFVRRVLDGAELLEVHPYFEDVARRRGFYNGE 482

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
           ++  +    GSI +++ IP D++++  TA +I P W +   +  QK+ D A S  +    
Sbjct: 483 LMRQIAQT-GSIRDLKEIPKDIRRLFVTAHDITPQWHVRIQAAFQKYTDNAVSKTVNFPA 541

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             S + +  +Y  A+ +GLK     R RS    V     +    K    P   P  +T  
Sbjct: 542 SASPEDVRQVYLLAYELGLKGITIYRDRSRDQQVLSFGQEKPPEKQYIAPRPRPARTTGV 601

Query: 938 LGI 940
             +
Sbjct: 602 TEV 604


>gi|332678272|gb|AEE87401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Francisella cf. novicida Fx1]
          Length = 590

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|226226348|ref|YP_002760454.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas
           aurantiaca T-27]
 gi|226089539|dbj|BAH37984.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas
           aurantiaca T-27]
          Length = 859

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 171/664 (25%), Positives = 276/664 (41%), Gaps = 71/664 (10%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYN 344
                  +L  RY +    G  +E P+  F RVA  +A  +          +  A EFY 
Sbjct: 14  LSANARTVLEKRYLVKDKSGKPVEKPEDMFWRVATTVAEADRRYGASDGAVQAIAEEFYF 73

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGGL 400
           L++   F  ++PTL N+G    QLS+CF+  V D L     GI+  L+  A++ +  GG 
Sbjct: 74  LMTQRRFEPNSPTLMNAGRPLGQLSACFVLPVDDALSNGQSGIYDTLRSMALIHQSGGGT 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  G+ +  T G + G + F+++ + +  AV QGG R+GA    L   H DV 
Sbjct: 134 GFSFSRLRSRGSMVRSTTGVASGPVSFMQLYDASTDAVKQGGTRRGANMGILRVDHPDVM 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+  +    +D  +  + N +  I   FM  V  +A + L  P                
Sbjct: 194 EFIACK----EDLTKITNFNISVGITTKFMDAVKADANYDLVDPVS-------------- 235

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         KV  ++ A  +W KM+   + TG P + F D  N  +P  H+G   
Sbjct: 236 -------------KKVTGELRAREVWDKMILGAWRTGEPGVFFIDEANRYNPVPHLGDYE 282

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           ++N C E  L +      VCNLGS+N+  + +N   D++ +   I  +   LDN+ID+N 
Sbjct: 283 ATNPCGEQPLLAY----DVCNLGSVNVGHYVSNGVVDWEAMRRDIALSTHFLDNIIDVNK 338

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + +    +   R IGLG+MGF   L  L IPY S E VE+  + MEF+       S  
Sbjct: 339 YPLPEIDALSKRIRRIGLGVMGFADMLVRLGIPYDSAEGVEMGRKVMEFLDVEGKKESER 398

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ERGA+  +  S+W                      + T     +  + R   + +RN
Sbjct: 399 LARERGAFPEWAQSIWGP--------------------DETCARDANGQRIRPMQL-LRN 437

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            N   +APT TI+ I G S  ++P +   ++++        VN   V   K    + + +
Sbjct: 438 CNVTTVAPTGTISIIAGCSSGLEPLFAVAFMRNQAGVMMPDVNEDFVAIAKAEGWYSDEL 497

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +  +    GS+ +   +P   + +  TA  I P + I   +  Q   D A S        
Sbjct: 498 MERIAKT-GSVQHA-EVPAKWQSVFNTANNISPEYHIRMQAAYQLHCDSAISKTTNFGFA 555

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +   +  IY  A+ M  K     R  S  +   ST    D   N        +      
Sbjct: 556 ATVDDVRAIYEMAYEMKCKGVTVYRDGSRDNQVLSTGATQDAAANRESAKAAVNGEAPKV 615

Query: 940 IPSS 943
              +
Sbjct: 616 DAKA 619


>gi|118497573|ref|YP_898623.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. novicida U112]
 gi|195536269|ref|ZP_03079276.1| ribonucleotide reductase, barrel domain, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208779371|ref|ZP_03246717.1| ribonucleotide reductase, barrel domain, putative [Francisella
           novicida FTG]
 gi|254372934|ref|ZP_04988423.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423479|gb|ABK89869.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           novicida U112]
 gi|151570661|gb|EDN36315.1| ribonucleoside-diphosphate reductase [Francisella novicida
           GA99-3549]
 gi|194372746|gb|EDX27457.1| ribonucleotide reductase, barrel domain, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208745171|gb|EDZ91469.1| ribonucleotide reductase, barrel domain, putative [Francisella
           novicida FTG]
          Length = 590

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|270307983|ref|YP_003330041.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
 gi|270153875|gb|ACZ61713.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
          Length = 599

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 288/647 (44%), Gaps = 83/647 (12%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345
                 ++L  RY     +G  IE P+  F RVA  +A  E +            EFY  
Sbjct: 16  LSTTAKRVLEKRYLKKDADGRVIETPEDMFHRVARVVASAEYKYAPGADISRIEEEFYQA 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +    F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++
Sbjct: 76  MFRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  
Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISC 195

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D     +   +  +   FM +V     + + +P                     
Sbjct: 196 KG----DPNALTNFYISVVVTRDFMTKVRNGEDYDIINPHT------------------- 232

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V ++++A  ++ +++   ++TG P + F D  N  +P   +G +   + C
Sbjct: 233 --------GEVVQRLNAACVFDRIVDQAWKTGDPGLVFIDRINDDNPTPLLGRIKHVSGC 284

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641
            E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N  
Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
              + +K+   +R +GLG+MGF   L L+ IPY S EA+  AD+ MEFI   +  AS +L
Sbjct: 341 PTPEIEKATLRNRKVGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKL 400

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ RG++ +++GS++D                                        MRN+
Sbjct: 401 AEVRGSFPAYEGSIYDVPGGRP----------------------------------MRNA 426

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
            C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++     + +
Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARRGGFHSKEL 486

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              L   +  + +IE IPD LK++  TA  I P W I   +  QK+ D A S  +    E
Sbjct: 487 FEKLVSSN-HLHDIECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDHAVSKTVNFSHE 545

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            + + +  ++  A+  GLK     R  S  +    T +     ++  
Sbjct: 546 ATREDMANVFNMAYDKGLKGITVYRDGSRAAQPLCTCESGVKLVDQY 592


>gi|157311535|ref|YP_001469578.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage Phi1]
 gi|149380739|gb|ABR24744.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage
           Phi1]
          Length = 747

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 188/785 (23%), Positives = 319/785 (40%), Gaps = 78/785 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++   G  + F  +++  I+E A  G  +V    +       + +G+S +D++  LI  
Sbjct: 4   NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62

Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +   I  E P+Y  V +   +  LR+ V                   Y  +  R I  G 
Sbjct: 63  AADNITVETPDYQYVASNLAMFALRKSVYGQFQPI----------DFYC-HIERNIATGK 111

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322
             R + +     ++ YL   + ++ DF   Y G   L ++Y          IE PQ  +M
Sbjct: 112 YDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
            + M L  +E   + +  ++FYN +++      TP +    T   Q SSC +    D L 
Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI               G+G +   +R  G+ I     +  GVIPF K       + +QG
Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R GA   Y   WH++ E  + L+ N G +  R   ++    I +L ++R  +    TL
Sbjct: 292 GIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351

Query: 502 FSPDEVS----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           FSPD       DL+    + F   YE  E+     + +    + A  L+  +    F TG
Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR----VKAEDLFLAVAIERFNTG 407

Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHF 611
             + TF D  N      ++V  +  SNLC EI L +        E ++C L +  L    
Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNF- 466

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             +  + +++       VR LDN++D   + +E+A  +    R++G+G+  F S L    
Sbjct: 467 --DIENMEEVERIAMVMVRALDNLLDYQDYPVEQAL-TAKKRRSLGVGVTNFASYLADNF 523

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y   +A E   ++ E + +  I ASV LA+E+GA      + + +G  PID      +
Sbjct: 524 FTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPIDWYKKTVD 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                 ++    + W+EL++ +K  G+RNS   A+ P  + + +   +  I+P    + V
Sbjct: 582 E----LVDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSV 637

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K +  G F  V   + N     DL    + + +K  +              K + T    
Sbjct: 638 KGSKEGQFNQVIPNVENNADVIDL----LWTLIKKGN--------------KPYLT---- 675

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYY-- 902
                   A+  QK++DQA S N   D  + K        +      A   GLKT YY  
Sbjct: 676 -------LAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYAN 728

Query: 903 LRSRS 907
           +R  +
Sbjct: 729 VRDGA 733


>gi|330507668|ref|YP_004384096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta concilii GP-6]
 gi|328928476|gb|AEB68278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosaeta concilii GP-6]
          Length = 676

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 184/725 (25%), Positives = 299/725 (41%), Gaps = 87/725 (12%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              +  A+  + R +  +E +        L E++ +E      +        E+Q L   
Sbjct: 17  TEKIALAISKAFRAVGREEED----APFRLAERVAKEAEERFSRTIPGV--EEIQDLVER 70

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSR 313
                    V    +       ++      L    D        ++L  RY L    G  
Sbjct: 71  ALISAGYADVAKAYILYRQKRTEIREAKRYLGVADDLKLSVNAAEVLKKRYLLRDERGDV 130

Query: 314 IEMPQAFFMRVAMGLALKETEK----EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +E P   F RVA  ++  E++     E     F  ++ +  F+ ++PTL NS     QLS
Sbjct: 131 VETPGEMFGRVADHISKAESKYGGDVESYRSLFLQMMRNLEFLPNSPTLMNSRLELGQLS 190

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           +CF+  V D L GIF AL+  A++ +  GG G  ++ +R     +  T G + G + F++
Sbjct: 191 ACFVLPVTDSLPGIFDALKNMALIHQSGGGTGFSFSRLRPKDDVVRATGGVASGPVSFMR 250

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + +     + QGG+R+GA    L   H D+ EF++ ++  G       + N +    D F
Sbjct: 251 IFDTATDVIKQGGRRRGANMGILRVDHPDIMEFIEAKERPGFLE----NFNLSVAATDEF 306

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M++        L +P                                  ++ A  L   +
Sbjct: 307 MEKSRGEGEIDLINPRT---------------------------GLAGGRLKAAELLGLI 339

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
            T  +  G P I F D  N   P    G + ++N C E  L         CNLGSINL  
Sbjct: 340 ATSAWRGGDPGIIFIDRINAAHPLP--GEIEATNPCGEQPLLPY----ESCNLGSINLSR 393

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                + D+D+LA  +  AVR LD+VID+N   + + +++  + R IGLG+MGF   L  
Sbjct: 394 LVRKGELDWDRLAELVSLAVRFLDDVIDMNRFPLPQIEEATLSRRKIGLGVMGFADMLIQ 453

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           ++I YASP+AV +A++ M FIS HA + S  L +ERG++  F  S               
Sbjct: 454 MNISYASPQAVALAEKLMGFISEHARAQSARLGEERGSFPLFDSSR-------------- 499

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             +R   A                    MRN+    IAPT TI+ I G S  I+P +   
Sbjct: 500 --LRGWSA--------------------MRNATVTTIAPTGTISIIAGTSSGIEPLFALA 537

Query: 790 YVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +V+  + G     V+        +R ++   +  +L    GS+  I  +P DLK++  TA
Sbjct: 538 FVRRVLEGARLLEVSPLFEKMAMERGIYTPDLKVELA-WRGSVQEIAGLPQDLKELFRTA 596

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +I     +   +  QK+ D A S  + L  E +   +  +YR A+ +G K     R  S
Sbjct: 597 LDISAQQHVRIQAAFQKYTDNAVSKTVNLPAEATVSDVLQVYRLAYDLGCKGVTVFRYGS 656

Query: 908 ATSVE 912
            + V 
Sbjct: 657 RSQVL 661



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR G V  F   KI+ AI KAF AV  +      R+ + +    E    R  +    
Sbjct: 4   RIRKREGRVVEFQTEKIALAISKAFRAVGREEEDAPFRLAERVAKEAE---ERFSRTIPG 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                +E+IQD VE +L+ +G+  + + Y+LYR++R+++R A+ +      +   + 
Sbjct: 61  -----VEEIQDLVERALISAGYADVAKAYILYRQKRTEIREAKRYLGVADDLKLSVN 112


>gi|187931832|ref|YP_001891817.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712741|gb|ACD31038.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 590

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQTVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|89256332|ref|YP_513694.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314780|ref|YP_763503.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156502406|ref|YP_001428471.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010838|ref|ZP_02275769.1| ribonucleoside-diphosphate reductase alpha chain [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367667|ref|ZP_04983688.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|290952875|ref|ZP_06557496.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313920|ref|ZP_06804485.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144163|emb|CAJ79425.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129679|gb|ABI82866.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253478|gb|EBA52572.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|156253009|gb|ABU61515.1| ribonucleoside-diphosphate reductase alpha chain [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 590

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|56707667|ref|YP_169563.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670138|ref|YP_666695.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456734|ref|ZP_03665207.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370175|ref|ZP_04986181.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254874480|ref|ZP_05247190.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604159|emb|CAG45167.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320471|emb|CAL08550.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568419|gb|EDN34073.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254840479|gb|EET18915.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158829|gb|ADA78220.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 590

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAHRIYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|78355160|ref|YP_386609.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217565|gb|ABB36914.1| ribonucleoside-diphosphate reductase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 745

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 168/642 (26%), Positives = 290/642 (45%), Gaps = 86/642 (13%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYN 344
                  +L  RY+    +G  +E     F RVA  +A +E +        ++ A EFY+
Sbjct: 12  LNQNAEVVLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYD 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++S+ F+ ++PTL N+GT   QL++CF+  V D +  IF A++  AM+ K  GG G  +
Sbjct: 72  LMTSWKFLPNSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R   + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+ 
Sbjct: 132 SRLRPAASRVGSTGGVASGPLSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIR 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G+     ++ N +  + + FMK V +   + L +P                    
Sbjct: 192 AKEREGE----FNNFNLSVALTEDFMKAVEKGEEYPLMAPHS------------------ 229

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     +    ++A  ++  ++   +E+G P I F D  N  +P    G + S+N 
Sbjct: 230 ---------GEAKGTLNAREVFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNP 280

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDI 638
           C E  L         CNLGS+NL   +        +  D+ +L   IR +VR LDNVID 
Sbjct: 281 CGEQPLLPY----EACNLGSVNLAGLYLAGHGSTADSIDWAELKRIIRLSVRFLDNVIDA 336

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           + + +++  ++ H +R IGLG+MG+   L  L IPY S +AV++A   MEFI     +AS
Sbjct: 337 SRYPLDRITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAAS 396

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            +LA+ERG + ++  S++                  +  +                    
Sbjct: 397 KQLAKERGPFPAYAESVF-----------------GQRDLGPY----------------- 422

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWD 817
           RN+    IAPT T++ + G S  ++P +   + +  M G+    VN +    LK    + 
Sbjct: 423 RNATITTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQCYS 482

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E ++  +    GS+  +E +P  ++ +  TA +I+P+W ++  +  Q++ D A S  + L
Sbjct: 483 EKLMEAV-TQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNL 541

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               +   +  IY  A+  G K     R     S    T  G
Sbjct: 542 PNSATIDDIRSIYWMAYERGCKGVTVYRDGCKQSQVLCTGDG 583


>gi|73748461|ref|YP_307700.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
 gi|73660177|emb|CAI82784.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 599

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 286/647 (44%), Gaps = 83/647 (12%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345
                 ++L  RY    + G  IE P+  F RVA  +A  E +            EFY  
Sbjct: 16  LSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQA 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++
Sbjct: 76  MSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  
Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISC 195

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D     +   +  +   FM +V     + + +P                     
Sbjct: 196 KG----DPNALTNFYISVVVTRDFMTKVRSGEDYDIINPHT------------------- 232

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + C
Sbjct: 233 --------GEVVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGC 284

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641
            E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N  
Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
              + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +L
Sbjct: 341 PTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKL 400

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ RG++ +++GS++D                                        MRN+
Sbjct: 401 AEIRGSFPAYEGSMYDVPGGRP----------------------------------MRNA 426

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
            C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++       +
Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSREL 486

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              L   +  + ++E IPD LK++  TA  I P W I   +  QK+ D A S  +    E
Sbjct: 487 FEKLVSSN-HLHDMECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHE 545

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            + + +  ++  A+  GLK     R  S  +    T +     ++  
Sbjct: 546 ATREDMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQY 592


>gi|83589985|ref|YP_429994.1| ribonucleotide-diphosphate reductase subunit alpha [Moorella
           thermoacetica ATCC 39073]
 gi|83572899|gb|ABC19451.1| Ribonucleotide reductase large subunit [Moorella thermoacetica ATCC
           39073]
          Length = 765

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 178/666 (26%), Positives = 280/666 (42%), Gaps = 90/666 (13%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFF----------MRVAMGLALKETEKEKRAV 340
                    IL  RY    NG  +E P+  F           R+    AL E + E+ A 
Sbjct: 1   MKITDNARTILEKRYLKKENGVPVETPEEMFRRVAAAVAGAERI-FNPALTEAQVEEYAD 59

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            FY L++S+ F+ ++PTL N+G    QLS+CF+  V D +  IF A+++ A++ K  GG 
Sbjct: 60  RFYRLMTSWDFLPNSPTLMNAGRELGQLSACFVLPVDDSMDAIFTAVKDAALIHKSGGGT 119

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R   + +  T G + G + F+KV N    A+ QGG R+GA    L   H D+ 
Sbjct: 120 GFSFSRLRPKNSPVRSTGGVASGPVSFMKVFNAATEAIKQGGTRRGANMGILRVDHPDIL 179

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+  ++N  +      + N +  +   FM  + ++  + L                   
Sbjct: 180 EFISCKENNNE----LTNFNISVGLTREFMDALARDDYYELKF----------------- 218

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       E +V++++ A  ++ +++   +  G P I F D  N  +P   +G + 
Sbjct: 219 ------------EGRVYQRLKAQEVFAEIVNHAWANGEPGIIFLDRLNEDNPTPELGEIE 266

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           ++N C E  L         CNLGS+NL     +   ++DKLA T+R AVR LDNVI+IN 
Sbjct: 267 ATNPCGEQPLLPY----EACNLGSVNLANMVRDGGVNWDKLADTVRLAVRFLDNVIEINE 322

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +EK       +R IGLG+MG+   L  L +PY S EAVE+  + M FI   A  AS +
Sbjct: 323 FPLEKISVMVRGNRKIGLGVMGWADMLFQLRLPYDSEEAVELGRKVMAFIQKEAHGASRD 382

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA ERG++ +   S++                                         +RN
Sbjct: 383 LAGERGSFPNIDKSIYRGQQ-------------------------------------LRN 405

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819
           + C  IAPT TI+ I G +  I+P +   Y K+ + G     VN        + +   E 
Sbjct: 406 ATCTTIAPTGTISMIAGTTSGIEPVFALAYTKNVLDGASLVEVNPVF-QAYVEENFPPEQ 464

Query: 820 MISDL--KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             S          +  IE IP +++++  TA EI P W I   +  Q   D A S  +  
Sbjct: 465 ARSIFNRIAAGARVSEIEYIPPEMRRVFVTALEISPEWHIRMQAAFQASTDNAVSKTVNF 524

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             E + + +   Y  A+ +G K     RS S       T        +  P  +      
Sbjct: 525 PSEATREDVRRAYELAYQLGCKGVTVYRSGSREKEVLITGAKNKPVRDREPAREKTYPRP 584

Query: 937 SLGIPS 942
                 
Sbjct: 585 RPKRTC 590


>gi|254369309|ref|ZP_04985321.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122259|gb|EDO66399.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 590

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANKALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMVGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + S++  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSNIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|291290451|dbj|BAI83246.1| ribonucleotide reductase A subunit [Enterobacteria phage AR1]
          Length = 754

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/792 (23%), Positives = 322/792 (40%), Gaps = 62/792 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENVKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              +   KW+ Q+ S N Y D       +     +       W  G K  YY  +R  + 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735

Query: 911 VEKSTLKGVDGK 922
            +   ++    +
Sbjct: 736 TDDYEIETPKAE 747


>gi|58584952|ref|YP_198525.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419268|gb|AAW71283.1| Ribonucleotide reductase, alpha subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 594

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/680 (28%), Positives = 301/680 (44%), Gaps = 101/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + +E++      G  +L DRY +       E  Q  F+R+A   +  +      A   Y+
Sbjct: 6   INHEKNGKLTDFGKAVLSDRYLIEN-----ESYQDLFIRIANYYSDNKE----HAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+  FM STP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G++PF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++ A  + D FM+ V  +  W L SP                   
Sbjct: 176 IRKPTGGDPNRKALNIHHAVIVDDRFMQAVESDLEWNLISPYNN---------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                      KV   I A  +W K+LT   ETG P+I F D  N   P+ +      + 
Sbjct: 220 -----------KVISTIKARDIWIKILTARIETGEPYIIFLDAINNNKPESYKRLNLDIK 268

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLC+EITL +  +           L +       ++      I   +R LDNV++   
Sbjct: 269 MSNLCSEITLTTGYDHLNKLRTAVCCLSSVNLEYYKEWRHNELFIEDIMRFLDNVLEDFI 328

Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +      +    S    R+IGLG+MGF S L    +P+ S  A +   +  +++   A  
Sbjct: 329 NKAPDEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLRKQADM 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA+E+GA               +D+  +    R                       
Sbjct: 389 VSKKLAEEKGAC--------------LDAKEINLMER----------------------- 411

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
               ++ +AIAPTA+I+ I G  S  I+P   N++ +  ++G F V N FL   L +++ 
Sbjct: 412 ---FTHKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLLAEKNQ 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ +    K    TA+E+D  W+IE AS R  +I Q+QS+NL
Sbjct: 469 NNDKIWSSISTNEGSVQHLDFLNKHEKLTFRTAYELDQRWIIEHASDRTPYICQSQSVNL 528

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  GLK+ YY RS+S    +K +             TD    
Sbjct: 529 FLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKASEMFQQRTD---- 584

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                        +EC  CQ
Sbjct: 585 ----------IDYSECLSCQ 594


>gi|134301989|ref|YP_001121958.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134049766|gb|ABO46837.1| ribonucleoside-diphosphate reductase, alpha chain [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 590

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 284/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  ++   RD        Q+L + Y L         PQ  F R A+  +  +    
Sbjct: 3   NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y   +   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYAAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EFL +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  +W  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L L  +P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L  E+G      G+                               
Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ +  +LK++  TA E+D  WL+     RQK
Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           ++ Q QSLN++     S   L  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                        +       S+ EC  C+
Sbjct: 573 -------------VEFSEIKQSENECIACE 589


>gi|330858747|ref|YP_004415122.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2]
 gi|327397681|gb|AEA73183.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2]
          Length = 754

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/792 (23%), Positives = 322/792 (40%), Gaps = 62/792 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGTGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              +   KW+ Q+ S N Y D       +     +       W  G K  YY  +R  + 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735

Query: 911 VEKSTLKGVDGK 922
            +   ++    +
Sbjct: 736 TDDYEIETPKAE 747


>gi|289432508|ref|YP_003462381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
 gi|288946228|gb|ADC73925.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. GT]
          Length = 599

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/647 (26%), Positives = 287/647 (44%), Gaps = 83/647 (12%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345
                 ++L  RY    + G  IE P+  F RVA  +A  E +            EFY  
Sbjct: 16  LSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQA 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++
Sbjct: 76  MSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  
Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISC 195

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D     + N +  +   FM +V     + + +P                     
Sbjct: 196 KG----DPNALTNFNISVVVTRDFMTKVRSGEDYDIINPHT------------------- 232

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + C
Sbjct: 233 --------GEVVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGC 284

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641
            E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N  
Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
              + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +L
Sbjct: 341 PTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKL 400

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ RG++ +++GS++D                                        MRN+
Sbjct: 401 AEIRGSFPAYEGSMYDVPGGRP----------------------------------MRNA 426

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
            C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++       +
Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSREL 486

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              L   +  + ++E IPD LK++  TA  I P W I   +  QK+ D A S  +    E
Sbjct: 487 FEKLVSSN-HLHDMECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHE 545

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            + + +  ++  A+  GLK     R  S  +    T +     ++  
Sbjct: 546 ATREDMANVFNMAYDQGLKGVTVYRDGSRAAQPLCTSESGVKLVDQY 592


>gi|241668403|ref|ZP_04755981.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876936|ref|ZP_05249646.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842957|gb|EET21371.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 590

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  D+   +D        Q+L + Y L         PQ  F R ++  +  +    
Sbjct: 3   NEKYLGIDIDISKDRELSEQAQQLLTNYYCLENEP----SPQYAFARASVAYSFGD---I 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  S   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EF+ +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  LW  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDTIKARKLWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L   ++P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L +E+G      G+                               
Sbjct: 376 IFKRIKEQAVEETLILGREKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ + D++K +  TA E+D  W++    +RQK
Sbjct: 454 LERELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            + Q QSLN++     S   +  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 HLCQGQSLNIFFPAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKNRLV 573

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                  + S              EC  C+
Sbjct: 574 EFSELKQSES--------------ECVACE 589


>gi|167627844|ref|YP_001678344.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597845|gb|ABZ87843.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 590

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +  YL  D+   +D        Q+L + Y L         PQ  F R ++  +  +    
Sbjct: 3   NEKYLGIDIDISKDRELSEQAQQLLTNYYCLENEP----SPQYAFARASVAYSFGD---I 55

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
             A   Y+  S   FM ++P L N+            SCFL+ VPD L G+     E   
Sbjct: 56  NLAQRIYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+   GG+G  W+ VR +          + G IPF+   +   VA  QG  RKG+  AY+
Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           +  H D+ EF+ +R  TGD  R+  +++ A  + D FM+ V  +  W L  PD+      
Sbjct: 169 DISHPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDD------ 222

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  V   I A  LW  +L   + TG P++ F D  N   P
Sbjct: 223 ---------------------KTVRDTIKARKLWETILETRYRTGEPYLNFIDTANRALP 261

Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           +        +  SNLC EI L +  + TAVC L S+NL  +      D  K  S I+  +
Sbjct: 262 KSQKELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIKDLI 315

Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R LDNV    ID     I KA+ S    R++GLG MGF S L   ++P+ S  A EI +E
Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEE 375

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + I   A+  ++ L +E+G      G+                               
Sbjct: 376 IFKRIKEQAVEETLILGREKGEAPDMAGT------------------------------- 404

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                      G RN++ +AIAP A  + I   S SI+P   N +      G     N +
Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKY 453

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L  EL++     E + SD+  + GS+  ++ + D++K +  TA E+D  W++    +RQK
Sbjct: 454 LERELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQK 513

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            + Q QSLN++     S   +  ++  AW  G K  YYLR+ ++   E  + K    +L 
Sbjct: 514 HLCQGQSLNIFFPAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKNRLV 573

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                  + S              EC  C+
Sbjct: 574 EFSELKQSES--------------ECIACE 589


>gi|228861160|ref|YP_002854183.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51]
 gi|227438834|gb|ACP31146.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51]
          Length = 754

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/792 (23%), Positives = 322/792 (40%), Gaps = 62/792 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    + EG
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPADRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              +   KW+ Q+ S N Y D       +     +       W  G K  YY  +R  + 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735

Query: 911 VEKSTLKGVDGK 922
            +   ++    +
Sbjct: 736 TDDYEIETPKAE 747


>gi|228861542|ref|YP_002854563.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14]
 gi|227438558|gb|ACP30871.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14]
          Length = 754

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 186/792 (23%), Positives = 321/792 (40%), Gaps = 62/792 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    +  G
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNAG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +  I+P    + VK +  G
Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
              +   KW+ Q+ S N Y D       +     +       W  G K  YY  +R  + 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735

Query: 911 VEKSTLKGVDGK 922
            +   ++    +
Sbjct: 736 TDDYEIETPKAE 747


>gi|319789960|ref|YP_004151593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermovibrio ammonificans HB-1]
 gi|317114462|gb|ADU96952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermovibrio ammonificans HB-1]
          Length = 568

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 176/636 (27%), Positives = 286/636 (44%), Gaps = 89/636 (13%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYNL 345
                 ++IL  RY         E PQ  F RVA  ++  E          +   EF  +
Sbjct: 3   KLSETAIEILKARYL-----RPGETPQELFERVARAVSEAELLYGPASQAARWEEEFLKV 57

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           + +  F+ ++PTL N+GT   QL++CF+  V D +  IF ++   A + K  GG G  ++
Sbjct: 58  MENLEFLPNSPTLMNAGTPLGQLAACFVLPVEDSIEEIFASVSLMAKIQKTGGGTGFSFS 117

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +  TNGK+ G + F+KV N    A+ QGGKR+GA    L   H DV+EF+  
Sbjct: 118 RLRPKGDTVKSTNGKASGPVSFMKVFNCATDAIKQGGKRRGANMGVLSVNHPDVKEFITC 177

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D +   + N +    D F ++  +     L +P +                   
Sbjct: 178 KT----DGKSFQNFNISVACTDDFFQKALKGGEIELINPRD------------------- 214

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    KV+ ++ A  L   +    ++TG P I + D  N  +P   +G + ++N C
Sbjct: 215 --------GKVWSRVKADELLDLIAESAWKTGDPGILYIDEINRHNPTPALGRIEATNPC 266

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E+ L         CNLGSINL       + +++KL   ++ AVR LD VID+N +   +
Sbjct: 267 GEVPLLPY----EECNLGSINLSKIVEKGRINWEKLERLVKVAVRFLDCVIDVNRYPHPE 322

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K    +R IGLG+MG+   L  L IPY S EAVE+A+  M FI+  A  AS ELA+++
Sbjct: 323 IEKMAKGNRKIGLGVMGWAELLIELEIPYDSEEAVELAERLMGFINRKAFEASAELAKQK 382

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++ +   S++                R +                      +RN+   +
Sbjct: 383 GSFPNIDKSVY----------------RGKT---------------------LRNATRTS 405

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDL 824
           IAPT TI+ I G + SI+P +   YVK  + G     +   L+ ++K+  L  + +   L
Sbjct: 406 IAPTGTISMIAGTTPSIEPLFAVGYVKRVLGGRRVPFIEPLLMKKVKELSL--QQLKEIL 463

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
           +   G++   E IP+ +K+I  TA EI P W ++  +  QK  D A S  + L    + +
Sbjct: 464 ES--GTLQRAEGIPEKIKRIFKTAHEIAPEWHLKIQAAFQKHTDNAVSKTVNLPKSATPE 521

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  I+   + + LK     R  S   V +  +   
Sbjct: 522 DIKEIFITGYKLKLKGVTVFREGSKEGVVEFKVDQE 557


>gi|126658753|ref|ZP_01729898.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
 gi|126620015|gb|EAZ90739.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110]
          Length = 728

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 206/779 (26%), Positives = 340/779 (43%), Gaps = 91/779 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++  DG++ + +   +   +  A  G   ++S  + S     +    +   ++  L+ +
Sbjct: 4   TVIKRDGSVANLDLNEIRDAIAYAIEG-YPLNSLELESRVNLQLNQPRTTRFIQETLVNT 62

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  L   K+P +  V  R  +     EV+                 L+ +Y  +      
Sbjct: 63  AVQLATPKDPEWLNVAGRLHIWNWTHEVIAKRGYGYGHYDVFSDTNLFSKYTSQL----- 117

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                 +     DL    + ++ E D  F++ G  +L  RY         E+ Q  F+  
Sbjct: 118 ------KIYSQRDLQEAVSWIEPELDKVFDHAGATLLTQRYLSDD-----ELIQEVFLVT 166

Query: 325 AMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           A+ LA+ E   E+   A  FY  ++      +TP L N        +SCF+ +V D +  
Sbjct: 167 ALVLAIPERMDERMSYARAFYMAIAHRKISLATPILANLRFEGGSGTSCFILSVEDSIES 226

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF  ++  A +++  GG+G + + +R +G+ +      S G++ ++++ NDTA+AVNQGG
Sbjct: 227 IFDNVKNTARISQEGGGVGINLSRIRAVGSWVRSKPNVSGGLMSWIRILNDTAIAVNQGG 286

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GAV    + WH+D+ EFL++R   GD RR+ +D+     + D FM+RV Q A WTL 
Sbjct: 287 RRAGAVTVAADIWHLDIPEFLEMRSEAGDQRRKAYDVFPQVVVTDNFMRRVEQGATWTLV 346

Query: 503 SPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            P EV      DL +L+G EF+ AYE  E  A  G++ + + ++A  L+  +L    ETG
Sbjct: 347 DPYEVKQVLGIDLPNLWGTEFDDAYEQIEEAASMGDLTLAQTVNARNLFIDILETQVETG 406

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-TAVCNLGSINLLAHFANNQF 616
            P+I FKD  N  +P +H+G++ S NLC E        +    CNL S+NL         
Sbjct: 407 LPYIAFKDALNRANPNKHIGIIPSVNLCCESFSVVVPGKLAHSCNLASVNLAQVED---- 462

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
             D+L    + AVR+LDN ID+    I +A+  N   R IG+G++G    L    + Y  
Sbjct: 463 --DELPEICQLAVRLLDNTIDVTTAPIGEARNHNRELRTIGVGVLGLADYLAKRGLRYQD 520

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
              +    E  +  S+  +  SV LA+ERG+Y +   S +  G                L
Sbjct: 521 KREI---RELFKEFSYQCLMGSVLLAKERGSYPAINSSEYGMGNI--------------L 563

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             +R+ R  W  L       G+RNS+ MAIAP  + + I G + S+ P Y     +S   
Sbjct: 564 GKSRSQRPEWKALYDLFDFYGIRNSHIMAIAPNTSSSLIQGCTASVLPPYAKFNAESLGK 623

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           GD      F    L++     +                                ID   +
Sbjct: 624 GDVMKAVPF----LREYGDNYQENQR----------------------------IDQRVV 651

Query: 857 IESASRRQKWIDQAQSL----NLYLD------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +++ +  QKW+D   S+    NL  D            +     +AW  GLK  YY+R+
Sbjct: 652 VDAIAEMQKWVDTGISMELVFNLNPDVYEPNKTVDASDIYDTALRAWRRGLKAIYYIRT 710


>gi|147669241|ref|YP_001214059.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
 gi|146270189|gb|ABQ17181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalococcoides sp. BAV1]
          Length = 599

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 285/647 (44%), Gaps = 83/647 (12%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345
                 ++L  RY    + G  IE P+  F RVA  +A  E +            EFY  
Sbjct: 16  LSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQA 75

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   F+ ++PTL N+G +  QLS+CF+  V D +  IF A+++ A++ K  GG G  ++
Sbjct: 76  MSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  +      + G +  + +    A  V QGG R+G   A L+  H D+  F+  
Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISC 195

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +     D     +   +  +   FM +V     + + +P                     
Sbjct: 196 KG----DPNALTNFYISVVVTRDFMTKVRSGEDYDIINPHT------------------- 232

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V R+++A  ++  ++   ++TG P + F D  N  +P   +  +   + C
Sbjct: 233 --------GEVVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGC 284

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641
            E TL         CNLGSI+L      +      DY+KL  T++ A+R LDNVID+N  
Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
              + +K+   +R IGLG+MGF   L L+ IPY S EA+  AD+ M+FI   +  AS +L
Sbjct: 341 PTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKL 400

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ RG++ +++GS++D                                        MRN+
Sbjct: 401 AEVRGSFPAYEGSMYDVPGGRP----------------------------------MRNA 426

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
            C +IAPT T++ I GVS  I+PS+  ++V++ + G+    +N +     ++       +
Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSREL 486

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
              L   +  + ++E IPD LK++  TA  I P W I   +  QK+ D A S  +    E
Sbjct: 487 FEKLVSSN-HLHDMECIPDWLKRLLVTAHCIRPEWHIRIQAAFQKYTDNAVSKTVNFPHE 545

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            +   +  ++  A+  GLK     R  S  +    T +     ++  
Sbjct: 546 ATRADMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQY 592


>gi|9632790|ref|NP_049845.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4]
 gi|417656|sp|P32282|RIR1_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Protein B1; AltName: Full=Ribonucleotide
           reductase
 gi|5354414|gb|AAD42621.1|AF158101_208 NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4]
 gi|509024|gb|AAA32527.1| ribonucleoside diphosphate reductase [Enterobacteria phage T4]
          Length = 754

 Score =  383 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/782 (23%), Positives = 317/782 (40%), Gaps = 64/782 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I  +EP+Y  V AR L+  LR+ V      +            + ++    +  G
Sbjct: 63  AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNAG 111

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       ++ +L + +K+ERD  F Y G   L ++Y       G   E PQ  F
Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K  + FY  +S+      TP +    T   Q SSC +    D L
Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  A            G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + DL M+R  +N   T
Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+         + +  +      A++      ++I A  L+  ++T    T   +
Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617
           + F D  N  +P  +    +  SNLC EI + ++   +    +G   L A   +N    D
Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A+K     R +G+G+  + + L      Y   
Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPSEYYSDTRWSRGELPIDWYN---KKIDQIA 585

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
             +     W  L++ +K  G+RNS   A+ P  + + +   +   +P    + VK +  G
Sbjct: 586 APKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGYEPPRGPVSVKESKEG 644

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F  V   +       DL+D       K +               K + T          
Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676

Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LRSRSA 908
              +   KW+ Q+ S N Y D       +     +       W  G+K  YY   R  S 
Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735

Query: 909 TS 910
           T 
Sbjct: 736 TD 737


>gi|154278713|ref|XP_001540170.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces
           capsulatus NAm1]
 gi|150413755|gb|EDN09138.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces
           capsulatus NAm1]
          Length = 508

 Score =  383 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/479 (35%), Positives = 253/479 (52%), Gaps = 20/479 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202
           + +   DG        ++   V   C GL    V +  +  +    +Y G++  +L+   
Sbjct: 1   MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L ++                +  LY  +  +    
Sbjct: 61  AETAAYMTVTHPDYATLAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                      +        + + Y+RDF ++Y G + L   Y L ING   E PQ   M
Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381
           RVA+G+   + E+    +E YNL+S   F  ++PTLFN+GT  PQ++SCFL  +  D + 
Sbjct: 173 RVAVGIHGDDVERV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L+  A+++K +GG+G +   +RG G++I GTNG S G++P L+V N+TA  V+QG
Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289

Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             KR GA   YLE WH D+ EFLDLRKN G +  R  D+  A W PDLFMKRV +N  WT
Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D+YG EFE  YE YE+     E +  + + A  LW  +L    ETG+P+
Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILEAQTETGNPF 404

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           + +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L       + +YD
Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYD 463


>gi|51893898|ref|YP_076589.1| ribonucleotide-diphosphate reductase subunit alpha [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857587|dbj|BAD41745.1| ribonucleotide reductase [Symbiobacterium thermophilum IAM 14863]
          Length = 776

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/680 (24%), Positives = 277/680 (40%), Gaps = 98/680 (14%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FY 343
               ++   ++  RY         E P     RVA  +A  E +      E       FY
Sbjct: 1   MELTHIAKTVMEKRYLRMKEDGTRETPDEMLRRVARVIAAVEEKYGASKKEIRAVEERFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L+    FM ++PT   +GT   QLS+CF+  V D L  I+  +++ A++ +  GG G  
Sbjct: 61  QLMDRQDFMPNSPTFTGAGTALGQLSACFVLPVGDSLPEIYETMKQAALIHQTGGGTGFA 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G  +  + G + G + FL+V N +  A+ QGG R+GA    L   H D+ +F+
Sbjct: 121 FSRLRPAGDVVRSSQGVASGPVSFLRVYNASTEAIKQGGTRRGANMGILRVDHPDILQFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +    +  D  +  + N +  I D FM+ + +   + L +P                   
Sbjct: 181 E----SKADITQITNFNISVAITDAFMEALEKGTEYELINPR------------------ 218

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V  K+SA  +W K++   ++TG P I F D  N R+P  HV V+ ++N
Sbjct: 219 ---------NGEVTGKLSAKLVWDKLVENAWKTGEPGIVFIDRINRRNPNNHVEVIEATN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDI 638
            C E  L         CNLGSINL     N   D     +++L    RTA R LDNVID 
Sbjct: 270 PCGEQPLPPY----GSCNLGSINLANFVKNPYTDRAEVDWERLGEVARTATRFLDNVIDA 325

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N + + +  +     R IGLG+MG+   L  + +PY S EAV + +  M FI   A+  S
Sbjct: 326 NKYPLPQIAEKALRDRRIGLGIMGWAEMLVQMGLPYDSEEAVALGNRVMTFIKQKALEES 385

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           + LA+ RG Y  ++GS W +                                       +
Sbjct: 386 MALAEVRGPYPEWEGSQWHKAGLK-----------------------------------V 410

Query: 759 RNSNCMAIAPTATIANICG-----VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           RN+    +APT TI+          S  I+P +  ++ ++        V+    +  ++ 
Sbjct: 411 RNATLTTVAPTGTISLFAARPDLPCSGGIEPKFALVFTRNQAGALMLDVDGQFASIARRE 470

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR---------Q 864
             + + ++  +    G+   +  +P+  ++I AT+ +I P W +   +           Q
Sbjct: 471 GWYSDELMQQVADR-GTARGVSGVPEKWQRIFATSHDITPEWHVRMQAAFQGGDGLPVDQ 529

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           + +D A S  +      + + +   Y  AW +GLK     R  S  S   +T      + 
Sbjct: 530 QPVDAAVSKTINFPHHATVEDVGKSYALAWQLGLKGITVYRDGSRASQVLTTGDKTKKQE 589

Query: 924 NAVPVTDPNSSTHSLGIPSS 943
                  P   +       +
Sbjct: 590 EPAAPPAPQGPSLRPRPTEA 609


>gi|317484384|ref|ZP_07943302.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6]
 gi|316924359|gb|EFV45527.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6]
          Length = 751

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/655 (25%), Positives = 295/655 (45%), Gaps = 90/655 (13%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNL 345
                ++L  RY+    NG  +E     F RVA  +A +E + E+   +       FY++
Sbjct: 14  NPNAEKVLSKRYYRKDENGQCVEDATGLFWRVASSVAAEEAKYEQSPWKPDALARAFYDM 73

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++ + F+ ++PTL N+G+   QLS+CF+  V D +  IF A++  AM+ K  GG G  ++
Sbjct: 74  MTDWRFLPNSPTLMNAGSELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFS 133

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R   + +  T G + G + FL++ N     + QGG R+GA    L   H D+ EF+  
Sbjct: 134 RLRPKNSRVGTTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDILEFIRA 193

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++  G+     ++ N +  I + FM+ V Q+  + L +P                     
Sbjct: 194 KEQEGE----FNNFNLSVGITEAFMQAVEQDRDYALVNPAS------------------- 230

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    K   +++A  ++  ++   +++G P I F D  N  +P    G + S+N C
Sbjct: 231 --------GKEQGRLNAREVFNLLVDKAWQSGDPGIIFLDRINRDNPTPAQGEIESTNPC 282

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLASTIRTAVRVLDNV 635
            E  L         CNLGS+NL + F               D+  +  TI  AVR LDNV
Sbjct: 283 GEQPLLPY----EACNLGSLNLSSFFVPGHLDETNPADRGIDWAGIERTIALAVRFLDNV 338

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D +   +E+  +    +R IGLG+MG+   L+ L IPY S +A+ +A+  M+FI     
Sbjct: 339 VDASQFPLERIAEQVRRNRKIGLGVMGWADLLYQLRIPYDSADAITLAERIMDFIETRGR 398

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +AS++LA ERG + +++ S++     P                                 
Sbjct: 399 AASIQLAAERGPFPAYETSVYPTKGIPP-------------------------------- 426

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
             +RN+    IAPT T++ + G S  ++P +   + ++ M G+    VN      L++ D
Sbjct: 427 --LRNATITTIAPTGTLSILAGCSSGVEPLFALSFARNVMDGERLMEVNPHFEEALREID 484

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            + + ++  +    GSI +++++P+DL+++  TA +I P W +   +  Q+  D A S  
Sbjct: 485 CYSQPLLEGVAEL-GSIQSLDQLPEDLRRVFVTAMDIAPEWHLRMQAAFQRHTDNAVSKT 543

Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + L    +   +  IY  A+  G K     R  S ++   +T            V
Sbjct: 544 VNLPNSATRDDIFAIYWMAYEEGCKGVTVYRDGSKSTQVLTTSAPAAKPSEESQV 598


>gi|206889365|ref|YP_002249440.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206890598|ref|YP_002249390.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741303|gb|ACI20360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742536|gb|ACI21593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 584

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/649 (26%), Positives = 302/649 (46%), Gaps = 78/649 (12%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK----RAVEFYNLLS 347
           F      +L  RY L    G  IE P+  F RV+  +A  E   +K       +F+ L+S
Sbjct: 3   FTDRAKTVLEIRYLLKNEKGEPIENPEQLFQRVSSYIAQAEKIYKKNSFEWEEKFHELIS 62

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
           S  F+ ++P L N+G    QL++CF+  + D +  IF  L++ A++ +  GG G +++ +
Sbjct: 63  SLRFLPNSPALMNAGKPKAQLAACFVLPIEDSIESIFKTLKDAALILQSGGGTGFNFSSL 122

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  +  T G + G + F+K+ +  +  + QGG R+GA    L   H D+ EF+ +++
Sbjct: 123 RPKGDVVRSTGGVASGPVSFMKIFDKASDIIKQGGARRGANMGVLRVDHPDIFEFIRIKR 182

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               +     +++ A  + D FM+ + +N  + L +P                       
Sbjct: 183 I---ESLSNFNISVA--VTDSFMEALFKNDYFPLINPRT--------------------- 216

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  +V RK+ A  ++ +++   +ETG P + F D  N  +P  H+G + S+N C E
Sbjct: 217 ------KEVVRKVKAKDIFDEIVESAWETGDPGVIFIDTINRSNPTPHIGQIDSTNPCGE 270

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             L         C LGS+NL  +    + D+++L   ++TA R LD+ ID+  + + + +
Sbjct: 271 QPLLPY----EACILGSLNLSKYVKEGKIDFERLEHDVKTATRFLDDAIDVTHYPVPEVE 326

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           K +  +R IGLG+MG+   L  L IPY   +A+ +A++ M+FIS  +  AS ELAQERG 
Sbjct: 327 KMHKGNRKIGLGIMGWADCLVELGIPYNHKKALALAEQVMQFISEKSHKASQELAQERGV 386

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           + +FKGS+W++   P                                   MRN+    IA
Sbjct: 387 FPNFKGSVWEKKGIP-----------------------------------MRNATTTTIA 411

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT TI+ I   S  I+P +   Y +  +  +F ++N +L+   +++  + E  I+ L   
Sbjct: 412 PTGTISIIADCSSGIEPYFLLAYKQRILDTEFEIINKYLIEIAQKQGFYSEDFINQL-RQ 470

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLD 886
            G++  ++ +P  +K++  TA EI P   I+  +  QK+ D A S  + L + +  + + 
Sbjct: 471 KGTLRGMKEVPLRIKRLFKTALEITPEEHIQMQASFQKYTDNAVSKTINLSQRTRKEDVA 530

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
            I+  A+  GLK     R  S              +   V    P  + 
Sbjct: 531 RIFILAYKKGLKGITIFRYGSKRGTLLKISDAHLAECCEVKGRAPRITK 579


>gi|300087825|ref|YP_003758347.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527558|gb|ADJ26026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 592

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/641 (27%), Positives = 282/641 (43%), Gaps = 83/641 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                  L++L  RY      G  +E P   F RVA  +A  E +          A EFY
Sbjct: 10  LNLTPNALRVLEKRYLRRDSRGEVVETPAELFRRVADAVASAERKYASDTSVRYIADEFY 69

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            ++S   F+ ++PTL N+GT   QLS+CF+  V D +  IF A++  A + K  GG G  
Sbjct: 70  RIMSGLLFLPNSPTLLNAGTTSGQLSACFVLPVEDSIEAIFEAVKYTAQIHKSGGGTGFS 129

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  VR +G  + G    + G +  + V +  A  V QGG R+G     L   H D+ +F+
Sbjct: 130 FAHVRPVGDDVDGRADAATGPVALIDVFSKAADYVRQGGIRRGCNSVVLPVDHPDIMDFI 189

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +     D     +   +  + D FM+RV     + L  P                   
Sbjct: 190 KAKA----DPLSLTNFYISVAVTDDFMRRVKTGQDYPLIYPR------------------ 227

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      ++   ++A A++ +++   + TG P   F D  N  +P  H+G +   +
Sbjct: 228 ---------NGQITGWLNAGAVFDRIVDQAWSTGDPGFVFIDQINRANPTPHLGRIEIIS 278

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF----DYDKLASTIRTAVRVLDNVIDIN 639
            C E TL         CNLGSINL      +      D+D L   +  AVR LDNVID+N
Sbjct: 279 GCGEQTLLPY----ESCNLGSINLAKMVKLDNNRTVVDFDTLKDVVSLAVRFLDNVIDVN 334

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              I + ++     R IGLG+MGF   L+ + IPY S  AV+IA E M FI   A   S 
Sbjct: 335 KFPISRIEEMTKRTRKIGLGVMGFADMLYQMGIPYNSESAVKIAREVMRFIKDEAHRTSR 394

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA+ERG + +FKGS++                R+ L                     MR
Sbjct: 395 LLARERGPFPAFKGSIY---------------DREGLEP-------------------MR 420

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDE 818
           N+ C  +APT T++ I G S  I+P +  ++V++ + G+    VN      +K   ++ E
Sbjct: 421 NAACTTVAPTGTLSIIAGCSSGIEPVFAGVFVRNILDGENLLEVNPHFEKAVKDAGVYSE 480

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +++ L   +  + +   +P++++KI  TA ++ P W ++  +  Q++ D A S  +   
Sbjct: 481 ELLARLVKCN-HLHDQHDVPEEIRKIFVTAHQVSPEWHVKIQAAFQEFTDNAVSKTVNFA 539

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            + + ++L  ++R A+  GLK     R  S       T   
Sbjct: 540 RQATREELASVFRMAYESGLKGITVYRDDSRELQPLCTGDT 580


>gi|282599258|ref|YP_003358570.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella
           phage phiSboM-AG3]
 gi|226973564|gb|ACO94317.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella
           phage phiSboM-AG3]
          Length = 759

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/786 (23%), Positives = 328/786 (41%), Gaps = 78/786 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + ++  DG+ + F+ ++   +V+ AC GL  VS   V++ +     D +    ++  LI
Sbjct: 1   MINVIKRDGSSVPFDIEKPHEVVDRACDGLTGVSMSEVIAASKIQFTDNMRTDRIQDILI 60

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++ +LI  + PNY  V AR     LR+ V                     + F + I++
Sbjct: 61  QAAASLISVDKPNYQYVAARLKSYDLRKAVYGQYKPPHLL-----------DIFVKNIKQ 109

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMP 317
            V  R   +     +   L + + ++RD  F +  +  L ++Y L     +      E P
Sbjct: 110 RVYDREFLDLYTTEEFNELNDVINHKRDKNFTWAAMGQLTEKYLLRDRSKKDSKIFYETP 169

Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  +M +AM L     +  + +   +FY   S+  F   TP +    T   Q SSC L  
Sbjct: 170 QVMYMGIAMALFSNWDKDSRLEMVKKFYEYASTGKFSLPTPIMAGVRTPTRQFSSCVLIK 229

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I    +          G+G D   +RG+G+ I G      G+IPF+K      
Sbjct: 230 TGDTLDSINATAKTIVDYVSKRAGIGFDVGAIRGIGSPIRGGEMVHTGLIPFIKYLTGAL 289

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA  AY+  WH   ++ + L+ N G +  R   ++    I  +  +R+  
Sbjct: 290 KSCSQGGIRGGAATAYIPLWHYQFDDVVVLKNNRGTEENRERRIDYGIQINRVMFERLVA 349

Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
                LF P +  ++++ Y     +F   YEN  + AD G ++  +K+ A  +++ +L  
Sbjct: 350 KQPLYLFDPKDNREMYEAYFADVDKFRTLYENMIKAADAGLVR-SKKLQAEEVFQMLLDQ 408

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609
             +TG  +I F D  N  SP  ++  ++SSNLC EI L +   E      G + L     
Sbjct: 409 RSDTGRIYIAFVDHMNEYSPF-NLDTIYSSNLCLEIALPTREFEQYNDENGRVALCTLAS 467

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  D  ++       V  LD +++   +   +A+K+   +R +G+G++     L  
Sbjct: 468 FNLTAFEDPTEMEDVAFVLVSALDMLLEYQDYPAIQARKAVEDYRPLGVGIVNVAHFLAK 527

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y SP  +E+ D  M  + F+ + AS  LA + GA    +G++   G    D   L 
Sbjct: 528 NFTGYGSPAGLEMLDAWMAHLHFYLVKASNRLAMKFGACK--RGTIHGMGQVTADLQPLP 585

Query: 730 AE--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
            +     +        L WD+LK  +KT G+RN+  +A+APT + + +   +  I+P   
Sbjct: 586 LDILPNGKKPEGMAYGLDWDDLKDDLKTYGIRNATLLAVAPTESSSQVLNATNGIEPPKG 645

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            + +K +  G +  V   +                                + L  ++  
Sbjct: 646 LVSIKGSKDGTYKQVVPDV--------------------------------ETLGPLYDL 673

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----------GKKLDFIYRQAWLMG 896
            +++D +  +++A+  Q+W+DQ+ S N + D               + +   Y   W  G
Sbjct: 674 KWDLDCIEYLKTAAVIQRWVDQSISTNTWYDPEKYPDGKIPRAKMMQDILSFYM--W--G 729

Query: 897 LKTTYY 902
            KT YY
Sbjct: 730 GKTLYY 735


>gi|32453720|ref|NP_861929.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria
           phage RB69]
 gi|32350539|gb|AAP76138.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage
           RB69]
          Length = 751

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 183/785 (23%), Positives = 312/785 (39%), Gaps = 70/785 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G   +F+++++  ++   C G   +    +  E   ++ DG+S  D++   I 
Sbjct: 1   MQVTKSSGVSQNFDAQKIIQVLTWQCEG-TQIDPYELYEEIKTHLVDGMSTKDIQKICIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  +EP+Y  V A+ L+  LR++V                   + ++    + EG
Sbjct: 60  VAANSISVEEPDYQYVAAKGLMFALRKDVYGQFEPPA-----------FIDHISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L       +++YL + +K+ERDF   Y G   L ++Y       G   E PQ   
Sbjct: 109 KYDPELLSRYSAEEIIYLDSRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   ET  + K  + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MAIGMALHQDETHDRLKHIIRFYDAVSTHQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  GVIPF K       + +Q
Sbjct: 229 KSINKTSASIIEYISKRAGIGINVGMLRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G D  R   M+    I DL M+R+ +N   T
Sbjct: 289 GGIRGGAATAYYPMWHLEVENLLVLKNNKGVDENRIRHMDYGIQINDLMMERLGKNDYIT 348

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP E+S        E +  +     +A++      ++I A+ L+   +T    T   +
Sbjct: 349 LFSPHEMSGELYYSFFEDQDKFRELYEKAEKDPTIRKKRIKALELFELFMTERSGTARIY 408

Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFD 617
             F D  N  +P  +    +  SNLC EI + ++        +G   L A      +  D
Sbjct: 409 PQFVDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNGPDAEIGLCTLSAFVLDKFDWQD 468

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            DK+       VR LDN++D   + + +A K     R +G+G+  + + L      Y   
Sbjct: 469 QDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASYEDA 527

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
               +  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  D++A
Sbjct: 528 NY--LTHELFERLQYGLIKASIKLAKEKGPCEYYSDTKWSRGELPIDWYN---KKIDQIA 582

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                   W   +   K  G+RNS   A+ P  + + +   +  I+P    + +K +  G
Sbjct: 583 APNYV-CDWKNFELNSKEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKESKEG 641

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-- 855
           +F  V   +                                +    ++  A+++      
Sbjct: 642 NFRQVVPNI--------------------------------EHNMSLYDYAWKLAKKGNK 669

Query: 856 -LIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY--LRS 905
             +   +   KW+ Q+ S N Y D    +K       +       W  G K  YY   R 
Sbjct: 670 PYLTQVAIMLKWVCQSASANTYYDPAVFEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTRD 729

Query: 906 RSATS 910
            S T 
Sbjct: 730 GSGTD 734


>gi|256830880|ref|YP_003159608.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580056|gb|ACU91192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfomicrobium baculatum DSM 4028]
          Length = 744

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/652 (26%), Positives = 289/652 (44%), Gaps = 84/652 (12%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVE 341
           D +       +L  RY     +G+ IE  +  F RVA  +A  E          +  A  
Sbjct: 12  DVSLNSNAELVLKKRYQRKGLDGTPIETAKEMFWRVAASIASMEKNYPSSPFKPKDLART 71

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++ + F+ ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G
Sbjct: 72  FYSLMTEYDFLPNSPTLMNAGTELGQLAACFVLPVGDSMDEIFDAVKNAALIHKSGGGTG 131

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +T +R   + +  T G + G I FLK+ N     V QGG R+GA    L   H D+ E
Sbjct: 132 FSFTRLRPKDSRVGSTGGVASGPISFLKIFNTATEQVKQGGTRRGANMGILRVDHPDILE 191

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  GD      + N +  + + FM+ V  +  + L +P                 
Sbjct: 192 FIRAKEREGDLN----NFNLSVALTEKFMQAVENDEEYPLVAPQSQE------------- 234

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                         V  K+ A  ++  ++   +E+G P I F D  N  +P    G + S
Sbjct: 235 --------------VIEKLKAREVFELLVRKAWESGDPGIIFIDRINRDNPNPDQGEIES 280

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL             D+D+L   +  +VR LDNVID
Sbjct: 281 TNPCGEQPLLPY----EACNLGSINLARFVREKDEGVEIDWDRLREVVHLSVRFLDNVID 336

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            + + +++  ++   +R IGLG+MG+   L+ L +PY S  A+ +A++ M FI   A SA
Sbjct: 337 ASEYPLDRITETVRKNRKIGLGVMGWADLLYQLGLPYDSRRAIVLAEQMMNFIQKEARSA 396

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA+ERG + S++ S++              +         T+ +             
Sbjct: 397 SKELAKERGPFPSYETSIY------------KEQNLGPYRHATTTTIAPTGTL------- 437

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLW 816
                          + I G S  ++P +   +V+  M G+  T  NSF V  L  +  +
Sbjct: 438 ---------------SIIAGCSSGVEPLFALCFVRQVMDGEKLTEANSFFVKALHDQGCY 482

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E +++++    GS+ N++ +P++L+ ++ T+ +I+P W ++  +  QK  D A S  + 
Sbjct: 483 SEKLMAEVIE-KGSVKNMDFLPEELRNVYVTSMDIEPQWHLKMQAAFQKHTDNAVSKTVN 541

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           L    + + +  IY  A+  G K     R    +     T  G   +  +  
Sbjct: 542 LPNSATQEDIYQIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGNKEEKKSDE 593


>gi|160931914|ref|ZP_02079307.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753]
 gi|156869251|gb|EDO62623.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753]
          Length = 812

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 174/670 (25%), Positives = 287/670 (42%), Gaps = 85/670 (12%)

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVE 341
           R        L +L  RY +    G  IE  +  F RVA  +A  +         E  A  
Sbjct: 58  RTMELSKNALTVLERRYLIKNGEGVVIETVEELFRRVAGAIAASDRRYDENADCEALADS 117

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY ++++  F+ ++PTL N+G    QLS+CF+  V D + GIF  +++ A++ K  GG G
Sbjct: 118 FYRMMTNLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFETIKQAALIHKSGGGTG 177

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ E
Sbjct: 178 FSFSRLRPCGSAVNSTGGVASGPISFMKVFNMATEAVKQGGTRRGANMGILRVDHPDIME 237

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  + N  +      + N +  + + FM  V     + L  P                 
Sbjct: 238 FIHCKTNNKE----ITNFNISVGLTEKFMNAVEAGKDYELVDPH---------------- 277

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V   ++A  ++  ++   +  G P I F D  N  +     G + S
Sbjct: 278 -----------GGRVTGTLNAREVFECIVDAAWHNGEPGIIFLDRLNRDNVVPKAGEIES 326

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVID 637
           +N C E  L         CNLGSINL            FD+DKL +T + AV  LDNVID
Sbjct: 327 TNPCGEQPLLPY----ESCNLGSINLTKMLREENGVYSFDWDKLKATAKKAVHFLDNVID 382

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            N + +++        R +GLG+MG+  AL  L IPY S +AV +A+  M  ++      
Sbjct: 383 ANKYPLKEIDFMTKQTRKVGLGVMGWADALLRLKIPYNSEQAVRLAETVMRAVTEAGREE 442

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA+ RG +  F+ S  DQ +                                     
Sbjct: 443 SRELAKARGTFPLFQESTLDQELPQ----------------------------------- 467

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLW 816
            RN+    IAPT T++ +   S  ++P +  +Y+++ M G +   VN  L   L++R L+
Sbjct: 468 -RNATVTTIAPTGTLSLLASCSSGVEPIFGYVYIRNIMDGTEMIEVNPILREVLEERGLY 526

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + ++  +    GS+  IE IP++++++  +A E+ P + I   +  Q+  D A S  + 
Sbjct: 527 SDELMKKIAK-QGSLEGIEEIPEEIRRVFVSAHEVSPEFHIRMQAAFQRHTDNAVSKTVN 585

Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
             +  + +++  +Y+ A+ +G K     R  S +    +  K         P     +  
Sbjct: 586 FCNSATREEVAEVYKLAFRLGCKGVTIYRDGSRSEQVLNIGKVKKDGQEESPAEGGQAVI 645

Query: 936 HSLGIPSSCT 945
                P   T
Sbjct: 646 KPRPRPDMTT 655


>gi|126460402|ref|YP_001056680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum calidifontis JCM 11548]
 gi|126250123|gb|ABO09214.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyrobaculum calidifontis JCM 11548]
          Length = 853

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 185/876 (21%), Positives = 347/876 (39%), Gaps = 102/876 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           +++  +G++  F  ++L   +E A       +   V       +   +   +L   +   
Sbjct: 3   RVLKLNGSVEPFQPEKLRRSIERAAQD----AGVEVDGAADIKVERDVGSWELADLVHVE 58

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 + P  A+V    LL ++ +E+    + + +    ++ + L        + +   
Sbjct: 59  LLKKAIERPELAEVAKSHLLGRIYKEIFGRDFLRVKSDEEYQRRALAAFEKLAGVIKPEA 118

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHING-SRIEMPQAFFMR 323
             LL +             L+ E D +  Y  L++  +  Y L        E P      
Sbjct: 119 LELLRQLK-----------LRPEFDRSLSYNALRLFTNGNYALRRLDFQLAETPS----M 163

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
            A  +A       +RA  +Y+ ++S   + ++P  FN+ T     +SCF+  + D L  I
Sbjct: 164 AAARVATAVARDVERARLYYDYITSLKLIPASPYWFNAWTSKEMFASCFILMIEDCLSSI 223

Query: 384 --------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
                   +  L  + ++ +  GG+G D++ +R  G  + G+ G + G I F+K+ +   
Sbjct: 224 THPGKRCIYDVLTRSGLIQQAGGGVGYDFSLLRPEGDVVRGSAGVASGPISFMKLFDANV 283

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR--- 492
             + QGGKR+GA    L  WH D+ +F+  +     D     + N +  + D FM++   
Sbjct: 284 EVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDV-HLQNFNISVVVDDAFMEKALD 342

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++  + L +P  V +   +   E         R+    +      ++A  L+R+++  
Sbjct: 343 VDKDPNYPLVNPRIVVEKLGIKPIEVLEL----TREVQLPKDATVGSVNAKELFREIVEG 398

Query: 553 LFETGHPWITFKDPCNIRSPQQHV------GVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +++G P + FK   N  +   +V       V   +N C E+       +  VCNL  IN
Sbjct: 399 AWDSGDPGLIFKSNMNASNSLLYVNVDGDRYVWFGTNPCAEVPG----ADKDVCNLTHIN 454

Query: 607 LLAHFAN-----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           L+                   D+  LA T R  VR LD+ +DI+   ++   ++    R 
Sbjct: 455 LVKFVKEGCSGRTLEEKLECIDWAGLAETARVGVRFLDDAVDISTTGMKDVDETYRKIRK 514

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG    L  L IPYAS +AV + +  + +I  +A+  S ELA+ERG +  F  S 
Sbjct: 515 IGLGVMGLAEMLIKLEIPYASWDAVTLVNRVLAWIYLNALDESAELARERGPFKYFHQSD 574

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK--------------------- 754
           + +GV P+         R    +       + EL  R+K                     
Sbjct: 575 YARGVIPVLKYQDFVWSR-WERVRAAYPPEYRELGDRLKAITYETRRWLDAMAKRFGKPT 633

Query: 755 --------TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
                     G+RNS  M++APT   + + G +  ++P +   ++++   G         
Sbjct: 634 LAELSEKVKGGVRNSVVMSVAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLVEYYWPG 693

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
           V  L+ R LW   +   ++   G + +   +P+D+K + ATA EI   W +   +  Q+W
Sbjct: 694 VEYLRARGLWTPEVRRAVEES-GMLRDAP-VPEDVKHLLATAMEIHWAWHVLMQASAQQW 751

Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTL 916
           +DQ  S  + +    +   + + +  AW +G+K     R +S +            K  L
Sbjct: 752 VDQGISKTINMPANATKDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGIKQEIKKKL 811

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950
                 +  + +    S         +     D  C
Sbjct: 812 ADTKIVVKPLSLDATISDAAEQVKLKALEEGKDPYC 847



 Score = 41.8 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 15/94 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+K NG V  F P K+ R+I +A         ++   V+  +    +  V R +   +
Sbjct: 2   YRVLKLNGSVEPFQPEKLRRSIERA---------AQDAGVE--VDGAADIKVERDVGSWE 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            A +VH+E     ++ ++ +    ++ + ++L R
Sbjct: 51  LADLVHVE----LLKKAIERPELAEVAKSHLLGR 80


>gi|269839439|ref|YP_003324131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269791169|gb|ACZ43309.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 598

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 280/631 (44%), Gaps = 84/631 (13%)

Query: 292 AFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMG------LALKETEKEKRAVEFYN 344
                 L +L +RY         IE P   F RVA        L    ++    A  FY 
Sbjct: 5   KLSTNALIVLEERYLRRNAKLEIIETPAEMFWRVARAVADADALYGPRSQVAATAERFYQ 64

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            ++   F+ ++PTL N+GT   Q  +CF+  V D L GIF  L+  A++ +  GG G  +
Sbjct: 65  AMAHLEFLPNSPTLMNAGTPSSQCMACFVLPVEDSLEGIFDTLKLAALIQQTGGGTGFSF 124

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +H T G S G + F+ + N     + QG KR+GA    L   H DV EF+ 
Sbjct: 125 SRLRPRGDVVHSTGGISSGAVSFMMLYNAMTETIKQGSKRRGANMGILRVDHPDVREFVT 184

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++    DRR  ++ N +  + D FM+ + +   + L +P +                  
Sbjct: 185 SKR----DRRALNNFNISVGVTDEFMRAIEKGEKYPLVNPRD------------------ 222

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V+    A  +W  ++   +++G P +   D  N ++P +H+G + ++N 
Sbjct: 223 ---------RSVWEHEDARRIWELIIQEAWDSGEPGLVALDTINRQNPTKHLGEIEATNP 273

Query: 585 CTEITLNSSSEETAVCNLGSINLLAH----FANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           C E  L+        C LGSINL A         Q D+ KL   +   V  LDNVIDIN 
Sbjct: 274 CAEEPLHPY----EACCLGSINLNAVVTGPPEQRQLDWHKLGELVDLGVHFLDNVIDINH 329

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +   + +     +R IGLG+MG+   L  L +PY S EA+ +A+E M F+   A+ ASV+
Sbjct: 330 YPDPRIEDICRRNRRIGLGVMGWADLLFQLGVPYDSEEALSLAEELMGFVEDRAVEASVK 389

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+ RG + ++ GS +D+   P                                   MRN
Sbjct: 390 LAERRGVFPNYPGSDYDRRGGPR----------------------------------MRN 415

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT--VVNSFLVNELKQRDLWDE 818
           +    IAPT TI  I   S  I+P +   Y +  + G      ++   + E ++R + D+
Sbjct: 416 ATTRTIAPTGTIGIIANCSAGIEPLFALTYTRRALGGRELKQEIHPVFLEEARRRGVLDD 475

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   +    G + N+  +P+DL+++ ATA EI P W +   +  Q+ +D   S  + L 
Sbjct: 476 HLREHVVAT-GRVRNLPTLPEDLRRVFATALEISPEWHVRMQATFQRHVDNGVSKTINLP 534

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            E + + ++  YR A+ +G K     R  S 
Sbjct: 535 QEATPEDVESAYRLAYELGCKGITVYRYGSR 565


>gi|154269831|ref|XP_001535822.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
 gi|150409470|gb|EDN04916.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
          Length = 524

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/451 (34%), Positives = 239/451 (52%), Gaps = 35/451 (7%)

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
           RV +N  WTLF P+E   L D+YG EFE  YE YE+     E +  + + A  LW  +L 
Sbjct: 1   RVEKNGEWTLFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILE 55

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              ETG+P++ +KD CN +S Q+++G + SSNLCTEI    S +E AVCNL SI L    
Sbjct: 56  AQTETGNPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFV 115

Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  +D+ KL    +  VR L+ +ID N + +E+AK+SN  HR I  G+ G   A   
Sbjct: 116 DPIRGEYDFGKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLA 175

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L +P+ SPEA ++  +  E I    ++AS ELA+  G YS+++GS   QG+   D   + 
Sbjct: 176 LRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKVDGPYSTYEGSPVSQGILQYDMWNVT 235

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      T    WD LK+ +   G                 I G ++  +P   N+
Sbjct: 236 P----------TDLWDWDSLKQDIAKHG-----------------ILGFNECFEPYTSNI 268

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +  ++G+F +VN +L+ +L    LW + M + +    GSI NI  IP D+K ++ T +
Sbjct: 269 YSRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVW 328

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908
           EI    +++ A+ R  +IDQ+QSLN++L EP+  K+  ++   W +GLKT  YYLR+ +A
Sbjct: 329 EISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAA 388

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           ++  + T+     K+    V   N +    G
Sbjct: 389 SAPIQFTVDQEQLKVADTNVARVNGALKKRG 419


>gi|68171691|ref|ZP_00545050.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658153|ref|YP_507276.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia
           chaffeensis str. Arkansas]
 gi|67998883|gb|EAM85576.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599610|gb|ABD45079.1| ribonucleoside-diphosphate reductase, alpha subunit [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 595

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 201/680 (29%), Positives = 299/680 (43%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + YERD      G  +L DRY L       E  Q  F+R++   +         A   Y+
Sbjct: 6   VDYERDNNLTAFGKAVLSDRYLLEN-----EDYQQLFVRISEYYSDNPE----HAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSQLWFMPATPILSNGGTNRGLPVSCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  + G +GK+ G+IPF+ V N   +A++QG  R+G+   YL  WH ++EEFLD
Sbjct: 117 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LRK TG D  R+  +++    + + FMK V  +  W L SP +                 
Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSNKFMKCVENDEPWDLISPKDQ---------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   I A  +W K+LT   ETG P+I F D  +   P+ +      + 
Sbjct: 220 -----------SVLFTIKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIK 268

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636
            SNLCTEITL +  +           L +        +   +  I   +R LDNV    I
Sbjct: 269 MSNLCTEITLTTGYDHLNKSRTAICCLASLNLEYYEQWKDNSLFIEDVMRFLDNVLTDFI 328

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +     +E+AK S    R+IG+G+MGF S L    IP+ S  A     +    I  HA +
Sbjct: 329 EKAPSEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIRKHADA 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  +A E+G+               +D+       R                       
Sbjct: 389 ASYNIAMEKGSC--------------LDAQDAGIVER----------------------- 411

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                N ++IAPTA+I+ I G  S  I+P   N++    ++G F V N FL   LK +  
Sbjct: 412 ---FVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLKLKGK 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            +E + S +  ++GS+ +++ + ++ K I  TA+E+D  W+IE  S R K+I QAQS+N+
Sbjct: 469 DNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNI 528

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  GLK+ YY RS+S    +K +   ++  +           
Sbjct: 529 FLPANVHKRYLHKIHFLAWRKGLKSLYYCRSKSIQRADKVSHGALEKSIEQYKQITN--- 585

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                         EC  CQ
Sbjct: 586 ----------FDYNECLSCQ 595


>gi|314121809|ref|YP_004063928.1| NrdA ribonucleoside-diphosphate reductase subunit alpha
           [Enterobacteria phage vB_EcoM-VR7]
 gi|313151566|gb|ADR32622.1| NrdA ribonucleoside-diphosphate reductase subunit alpha
           [Enterobacteria phage vB_EcoM-VR7]
          Length = 751

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/796 (23%), Positives = 327/796 (41%), Gaps = 70/796 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+ +++  ++  +C G  ++    +      ++ DG++  D++T +I 
Sbjct: 1   MQVQKSSGVSQDFDGQKIIKVLSWSCEG-TNIDPYELYETIKPHLRDGMTTRDIQTVIIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            S  LI  +EP+Y  V A+  +  LR++V      +            + +     + EG
Sbjct: 60  VSAGLISVEEPDYQYVAAKATMFALRKDVYGQFEPR-----------SFIDQISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L  S    ++ YL + +K+ERDF   Y G   L ++Y       G   E PQ   
Sbjct: 109 KYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K    FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + +L M+R+ +N   T
Sbjct: 289 GGIRGGAATAYYPLWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYIT 348

Query: 501 LFSPDEV----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSP E        +     +F   YE  E+     +    ++I A  L+   +T    T
Sbjct: 349 LFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK----KRIKAKDLFELFMTERSGT 404

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSS--SEETAVCNLGSINLLAHFAN 613
              +  F D  N  +P  +    +  SNLC EI + ++  + E A   L +++     + 
Sbjct: 405 ARVYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSAFVLDSF 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + +++A K     R +G+G+  + + L      
Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQGYPVKEALK-AKKRRNLGVGVTNYAAWLASNFAS 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           YA  +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 524 YA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPIDWYN---KKI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A        W +L++ +   G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQIAAPNYV-CDWAQLREDLVAYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V   +      + L+D A +   K +               K + T      
Sbjct: 638 SKEGSFNQVVPNIE---HNKGLYDYAWVLAKKGN---------------KPYLT------ 673

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                  +   KW+ Q+ S N Y D       +     +       W  G K  YY  +R
Sbjct: 674 -----MVAIMLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLMYFWYFGGKNLYYHNTR 728

Query: 907 SATSVEKSTLKGVDGK 922
             +  +   ++    +
Sbjct: 729 DGSGTDDYEIEAPKAE 744


>gi|218778781|ref|YP_002430099.1| ribonucleotide-diphosphate reductase subunit alpha
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760165|gb|ACL02631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfatibacillum alkenivorans AK-01]
          Length = 724

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/661 (26%), Positives = 290/661 (43%), Gaps = 79/661 (11%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343
            +F    L +L  RY     NG  IE P+    RVA  +A  + + ++ A       +FY
Sbjct: 3   LSFSSSALVVLKKRYLKKDKNGRVIESPEKMLQRVADSVARADKDYDETADIQALAAQFY 62

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +L+S   F+ ++PTL N+G R  QLS+CF+  V D +  IF +L+  AM+ K  GG G  
Sbjct: 63  DLMSKGWFIPNSPTLMNAGRRLGQLSACFVLPVEDSIESIFDSLKHTAMIHKSGGGTGFS 122

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ VR     +  T G S G I F+ V +     V QGG R+GA  A L   H D+EEF+
Sbjct: 123 FSRVRPANDKVLSTAGVSSGPISFMAVFDAATETVKQGGTRRGANMAILRVDHPDIEEFI 182

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    DD     + N +  +   FM+ + +   + L +P   +               
Sbjct: 183 ACK----DDPAFLQNFNISVGLTQEFMEALEKGGDYELVNPRTRNS-------------- 224

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                         + ++A  ++  ++   +++G P I F D  N  +P   +G + ++N
Sbjct: 225 -------------VKTLNAPKIFDMIVNSAWQSGEPGIIFLDRINEANPTPALGEIEATN 271

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C E  L         CNLGSINL       + D D+L + I TAV  LDNV++IN + +
Sbjct: 272 PCGEQPLLPY----ESCNLGSINLGKMAEGGKLDKDRLKAVIHTAVHFLDNVVEINKYPL 327

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++ K+     R +GLG+MGF   L  L +PY S EAV +A E M  IS  +  AS +L +
Sbjct: 328 KEIKEQTLATRKVGLGVMGFADLLIKLGVPYDSEEAVAMAHEVMSLISEESKKASAQLGE 387

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            RG + ++ GS++D+   P                                   MRN+  
Sbjct: 388 ARGNFPAYAGSMYDKPETPH----------------------------------MRNATT 413

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMIS 822
             +APT TI+ I   S  I+P +   Y +  + G+     +       K++  + E +  
Sbjct: 414 TTLAPTGTISIIANASSGIEPIFAVAYTRRVLDGERLHEFHPLFEEMAKEQGFFTEDLAK 473

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
           ++   +GSI  +  IP +++++  T+ +I P W +   +  QK+ D A S  +      +
Sbjct: 474 NIAL-EGSIQEMTNIPKEVRRLFKTSHDISPEWHVRIQAAFQKYTDNAVSKTVNFPHSAT 532

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            + ++ +++ A   G K     R  S      S     +G      +        + G+ 
Sbjct: 533 REDVEKVFKLARETGCKGVTIYRDGSRDHQVLSVASRSEGPRPTGELAPRARPIRTHGVT 592

Query: 942 S 942
            
Sbjct: 593 E 593


>gi|255003305|ref|ZP_05278269.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Puerto Rico]
 gi|255004431|ref|ZP_05279232.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Virginia]
          Length = 595

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/680 (28%), Positives = 291/680 (42%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD         +L DRY L       E  Q  F+RV+   +  +      A   Y+
Sbjct: 6   VDRTRDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSKLWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++    + D FM+ V Q+  W L SP +                 
Sbjct: 176 IRKPTGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD----------------- 218

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  LW K+LT   ETG P++ F D  N   P  +      V 
Sbjct: 219 ----------KCVISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVK 268

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLCTEITL +  +           L +        +      I   +R LDNV+    
Sbjct: 269 MSNLCTEITLATGEDHLGKSRTAICCLASLNLEYYDMWSTEPMFIEDVMRFLDNVLTDFI 328

Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +     IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I   A  
Sbjct: 329 NKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADE 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA E+G                 D+I      R                       
Sbjct: 389 VSHKLALEKGPCP--------------DAIDANKMER----------------------- 411

Query: 757 GMRNSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                + ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L+ + L
Sbjct: 412 ---FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGL 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N+
Sbjct: 469 DNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 528

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  G+K+ YYLRS+S    +K                     
Sbjct: 529 FLPAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADKV-------------SHVHVGQ 575

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             S     +     EC  CQ
Sbjct: 576 AVSPQRQITNFDYDECLACQ 595


>gi|330998672|ref|ZP_08322402.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329576533|gb|EGG58041.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 591

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/683 (26%), Positives = 284/683 (41%), Gaps = 102/683 (14%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +  ++  ERD     +  + L + Y         + PQ  F  VA   A         A 
Sbjct: 1   MGIEIDLERDSLLGEVSRKRLRESYMKEEE----QSPQERFATVAETFASNPA----HAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+  S      STP L    ++     SCF   + D   G+   L E   L+   GG+
Sbjct: 53  RIYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYMQDTAEGLVNTLSEVNWLSMLGGGV 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G            I   + KS GV+P LK+ +   +A  QG  R+G+  A+L+  H D+ 
Sbjct: 113 GIHVD--------IRSADDKSVGVMPHLKIYDAACLAYRQGRTRRGSYAAFLDVDHPDII 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +FL++RK TGD   RT +++    I D FM+ + ++         +  D        +E+
Sbjct: 165 QFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS-----MVNADADDS-------WEL 212

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVG 577
              +          +V   +SA  +W+++L +  +TG P+I F D  N   P        
Sbjct: 213 RDPHSH--------RVVEVVSARDIWQRILELRMQTGEPYIVFIDAANRALPSWLSDKGL 264

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
            +H SNLCTEI L +S + TAVC L S+NL          ++     I   +  LDNV  
Sbjct: 265 KIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDH-----WNTNEQFIPDVMEFLDNVLQ 319

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID   +++E+A+ S    R+IG+G +GF + L    IP  S  A  I       I   
Sbjct: 320 YFIDNAPNSVERARYSALRERSIGIGALGFHAYLQSKRIPIESVLAKSINYRMFSHIKEE 379

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                  L ++RG     K    D G+                                 
Sbjct: 380 CARGDEILCEKRGPCPDAK----DAGIP-------------------------------- 403

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S+  A+AP A+ + I G  S SI+P   N+Y +  +SG   + N  L+  L++
Sbjct: 404 ----RRFSHWNAVAPNASSSLIMGATSPSIEPIRANIYRQDTLSGAHIIKNKMLIPVLEE 459

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             L  + + + +  HDGS+ ++E +P  ++ +  TA EID  WLI+ A+ RQ++IDQ QS
Sbjct: 460 YGLNTDEVWTSITAHDGSVQHLEALPQVIRDVFKTAQEIDQRWLIDLAADRQEFIDQGQS 519

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL+   + S   L   +  AW +GLK+ YY RS      +K   K    +L        
Sbjct: 520 LNLFFPADVSIAYLHACHFLAWKVGLKSLYYCRSDKLRKADKLGEKVERHRLEESINMRE 579

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                S            C  C+
Sbjct: 580 VLENSS------------CLACE 590


>gi|254995135|ref|ZP_05277325.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. Mississippi]
          Length = 595

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 190/680 (27%), Positives = 291/680 (42%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD         +L DRY L       E  Q  F+RV+   +  +      A   Y+
Sbjct: 6   VDRTRDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 57  YMSKLWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 116

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 117 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 175

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++    + D FM+ V Q+  W L SP +                 
Sbjct: 176 IRKPTGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD----------------- 218

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  +W K+LT   ETG P++ F D  N   P  +      V 
Sbjct: 219 ----------KCVISTVRARDMWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVK 268

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLCTEITL +  +           L +        +      I   +R LDNV+    
Sbjct: 269 MSNLCTEITLATGEDHLGKSRTAICCLASLNLEYYDMWSTEPMFIEDVMRFLDNVLTDFI 328

Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +     IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I   A  
Sbjct: 329 NKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADE 388

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA E+G                 D+I      R                       
Sbjct: 389 VSHKLALEKGPCP--------------DAIDANKMER----------------------- 411

Query: 757 GMRNSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                + ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L+ + L
Sbjct: 412 ---FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGL 468

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N+
Sbjct: 469 DNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 528

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  G+K+ YYLRS+S    +K                     
Sbjct: 529 FLPAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADKV-------------SHVHVGQ 575

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             S     +     EC  CQ
Sbjct: 576 AVSPQRQITNFDYDECLACQ 595


>gi|308814594|ref|YP_003934868.1| aerobic NDP reductase large subunit [Shigella phage SP18]
 gi|308206186|gb|ADO19585.1| aerobic NDP reductase large subunit [Shigella phage SP18]
          Length = 751

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/796 (23%), Positives = 327/796 (41%), Gaps = 70/796 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++    G    F+ +++  ++  +C G  ++    +      ++ DG++  D++T +I 
Sbjct: 1   MQVQKSSGVSQDFDGQKIIKVLSWSCEG-TNIDPYELYETIKPHLRDGMTTRDIQTVIIK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            S  LI  +EP+Y  V A+  +  LR++V      +            + +     + EG
Sbjct: 60  VSAGLISVEEPDYQYVAAKATMFALRKDVYGQFEPR-----------SFIDQISYCVNEG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321
                L  S    ++ YL + +K+ERDF   Y G   L ++Y       G   E PQ   
Sbjct: 109 KYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   E  ++ K    FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA  AY   WH++VE  L L+ N G +  R   M+    + +L M+R+ +N   T
Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYIT 348

Query: 501 LFSPDEV----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSP E        +     +F   YE  E+     +    ++I A  ++   +T    T
Sbjct: 349 LFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK----KRIKAKDVFELFMTERSGT 404

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSS--SEETAVCNLGSINLLAHFAN 613
              +  F D  N  +P  +    +  SNLC EI + ++  + E A   L +++     + 
Sbjct: 405 ARVYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSAFVLDSF 464

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +  D DK+       VR LDN++D   + +++A K     R +G+G+  + + L      
Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQGYPVKEALK-AKKRRNLGVGVTNYAAWLASNFAS 523

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           YA  +A ++  E  E + +  I AS++LA+E+G    +  + W +G  PID      +  
Sbjct: 524 YA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPIDWYN---KKI 578

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D++A        W +L++ +   G+RNS   A+ P  + + +   +  I+P    + +K 
Sbjct: 579 DQIAAPNYV-CDWAQLREDLVEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G F  V   +      + L+D A    +    G+            K + T      
Sbjct: 638 SKEGSFNQVVPNIE---HNKGLYDYA---WVLAKQGN------------KPYLT------ 673

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                  +   KWI Q+ S N Y D       +     +       W  G K  YY  +R
Sbjct: 674 -----QVAIMLKWICQSASANTYYDPQNYPKGKVPMSVMLDDLMYFWYFGGKNLYYHNTR 728

Query: 907 SATSVEKSTLKGVDGK 922
             +  +   ++    +
Sbjct: 729 DGSGTDDYEIEAPKAE 744


>gi|56416956|ref|YP_154030.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma
           marginale str. St. Maries]
 gi|222475322|ref|YP_002563739.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma
           marginale str. Florida]
 gi|56388188|gb|AAV86775.1| ribonuclease-diphosphate reductase alpha chain [Anaplasma marginale
           str. St. Maries]
 gi|222419460|gb|ACM49483.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma
           marginale str. Florida]
          Length = 606

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/680 (28%), Positives = 291/680 (42%), Gaps = 100/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD         +L DRY L       E  Q  F+RV+   +  +      A   Y+
Sbjct: 17  VDRTRDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 67

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 68  YMSKLWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 127

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G  +   +GK+ G+IPF+ V N   +A++QG  R+G+   YL   H ++EEFLD
Sbjct: 128 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 186

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           +RK TG D  R+  +++    + D FM+ V Q+  W L SP +                 
Sbjct: 187 IRKPTGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD----------------- 229

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580
                       V   + A  LW K+LT   ETG P++ F D  N   P  +      V 
Sbjct: 230 ----------KCVISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVK 279

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            SNLCTEITL +  +           L +        +      I   +R LDNV+    
Sbjct: 280 MSNLCTEITLATGEDHLGKSRTAICCLASLNLEYYDMWSTEPMFIEDVMRFLDNVLTDFI 339

Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +     IE+AK +    R+IG+G+MGF S L    +P+ S  A     +  E I   A  
Sbjct: 340 NKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADE 399

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            S +LA E+G                 D+I      R                       
Sbjct: 400 VSHKLALEKGPCP--------------DAIDANKMER----------------------- 422

Query: 757 GMRNSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
                + ++IAPTA+I+ I G +   I+P   N++    ++G F V N FL   L+ + L
Sbjct: 423 ---FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGL 479

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            ++ + S +  ++GS+ +++ + +  K +  TA+E+D  W++E +S R  ++ QAQS+N+
Sbjct: 480 DNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 539

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +L      + L  I+  AW  G+K+ YYLRS+S    +K                     
Sbjct: 540 FLPAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADKV-------------SHVHVGQ 586

Query: 935 THSLGIPSSCTSDTECEVCQ 954
             S     +     EC  CQ
Sbjct: 587 AVSPQRQITNFDYDECLACQ 606


>gi|255028523|ref|ZP_05300474.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes LO28]
          Length = 620

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 225/654 (34%), Positives = 323/654 (49%), Gaps = 76/654 (11%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE--TEKEKR 338
              +  E+D  F Y GL +L  RY       +  E+PQ  ++ +A+ L   E   ++ K 
Sbjct: 2   GKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERWLTIALYLMQNEPKEKRMKL 61

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L GI+ +  + A ++K+ G
Sbjct: 62  VEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGG 121

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G     VR  GA I G  G S GVIP++K  N+TAV+V+Q G+RKGA+  YL+ +H D
Sbjct: 122 GVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKD 181

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +E FLDLR N GD R R HD+ TA  IPD+FM+ V +   W LF P EV      Y ++F
Sbjct: 182 IESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDF 241

Query: 519 ------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                 E  +     +    E    + + A+ + ++++    ETG+P++ ++D  N  +P
Sbjct: 242 YDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNP 301

Query: 573 QQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCNLGSINLLAHFAN 613
            +H G+V+SSNLCTEI  N S                     +  VCNL S+NL      
Sbjct: 302 NKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVA 361

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              +   L   I   VR+LDNVID+N   + +A  +N  +R+IGLG  G+   L L +I 
Sbjct: 362 ---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIA 418

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           + S EA + ADE  E I++ AI AS +LAQE+GAY  FKGS W+ G              
Sbjct: 419 WDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTG-------------- 464

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           +  A    +   W EL K V   G+RN+  +A+AP  + A I G + SIDP Y   Y + 
Sbjct: 465 EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEE 524

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                  V+   L                          N+   P   K  +     +D 
Sbjct: 525 KKDYRRPVIAPDL--------------------------NLSTYPYYEKGAYK----VDQ 554

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              +    RRQ+ +DQ+ S N Y+       KL  ++  AW  GLKTTYY+RS 
Sbjct: 555 FASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSN 608


>gi|303258317|ref|ZP_07344320.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302858763|gb|EFL81851.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 591

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/683 (26%), Positives = 283/683 (41%), Gaps = 102/683 (14%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +  +   ERD     +  + L + Y         + PQ  F  VA   A         A 
Sbjct: 1   MGIEFDLERDSLLGEVSRKRLRESYMKEEE----QSPQERFATVAETFASNPA----HAQ 52

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             Y+  S      STP L    ++     SCF   + D   G+   L E   L+   GG+
Sbjct: 53  RIYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYMQDTAEGLVNTLSEVNWLSMLGGGV 112

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G            I   + KS GV+P LK+ +   +A  QG  R+G+  A+L+  H D+ 
Sbjct: 113 GIHVD--------IRSADDKSVGVMPHLKIYDAACLAYRQGRTRRGSYAAFLDVDHPDII 164

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +FL++RK TGD   RT +++    I D FM+ + ++         +  D        +E+
Sbjct: 165 QFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS-----MVNADADDS-------WEL 212

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVG 577
              +          +V   +SA  +W+++L +  +TG P+I F D  N   P        
Sbjct: 213 RDPHSH--------RVVEVVSARDIWQRILELRMQTGEPYIVFIDAANRALPSWLSDKGL 264

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635
            +H SNLCTEI L +S + TAVC L S+NL          ++     I   +  LDNV  
Sbjct: 265 KIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDH-----WNTNEQFIPDVMEFLDNVLQ 319

Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             ID   +++E+A+ S    R+IG+G +GF + L    IP  S  A  I       I   
Sbjct: 320 YFIDNAPNSVERARYSALRERSIGIGALGFHAYLQSKRIPIESVLAKSINYRMFSHIKEE 379

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
                  L ++RG     K    D G+                                 
Sbjct: 380 CARGDEILCEKRGPCPDAK----DAGIP-------------------------------- 403

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
                R S+  A+AP A+ + I G  S SI+P   N+Y +  +SG   + N  L+  L++
Sbjct: 404 ----RRFSHWNAVAPNASSSLIMGATSPSIEPIRANIYRQDTLSGAHIIKNKMLIPVLEE 459

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
             L  + + + +  HDGS+ ++E +P  ++ +  TA EID  WLI+ A+ RQ++IDQ QS
Sbjct: 460 YGLNSDEVWTSITAHDGSVQHLEALPQVIRDVFKTAQEIDQRWLIDLAADRQEFIDQGQS 519

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           LNL+   + S   L   +  AW +GLK+ YY RS      +K   K    +L        
Sbjct: 520 LNLFFPADVSIAYLHACHFLAWKVGLKSLYYCRSDKLRKADKLGEKVERHRLEESINMRE 579

Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954
                S            C  C+
Sbjct: 580 VLENSS------------CLACE 590


>gi|13540923|ref|NP_110611.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma
           volcanium GSS1]
          Length = 767

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 206/838 (24%), Positives = 351/838 (41%), Gaps = 116/838 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMY--DGLSESDLETA 201
           ++  DGT++ F   ++ M + +A   +++     ++ +  +  + +   +  +   ++  
Sbjct: 5   VVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRDAETLADKVVERLKNIERPTVEQIQDI 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     T   +   +  V        L RE         ++A   E + L  +   +   
Sbjct: 65  VEDVLMTSKIEGKIFTDVAKS---YILYRE--------KRRAIREEKESLGVKDDLKLTL 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315
             VK       + D D   +    +  R  A     ++ LYD       G   E      
Sbjct: 114 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIIEALYDFMEYKKTGKIPENAEKIG 173

Query: 316 ---MPQAFFMRVAMGLALKETEKEKRAVEF------------------YNLLSSFHFMCS 354
              + Q   +R A     ++   E    EF                    ++SS  F+ +
Sbjct: 174 KVSLTQEEVLRRAFNYMKEDGIMEGTFEEFMDFLSTKGTSAHLYINKFEEMMSSLDFVPN 233

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG G  ++ +R     +
Sbjct: 234 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 293

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ + T   + QGGKR+GA    L   H D+ EF+ L K++ +   
Sbjct: 294 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFV-LSKDSENKVL 352

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              +++    + D F +++  +    L +P                              
Sbjct: 353 SNFNISVG--VTDEFFEKLDNDDYVDLINPRT---------------------------K 383

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV ++I A  LW  ++   ++T  P + F D  N ++P ++VG + S+N C E  L    
Sbjct: 384 KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 442

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSINL  +      DYD+L  T+  A R LD+VID N   +E+ KK     R
Sbjct: 443 ---ESCNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANKFPVEQIKKVTRMTR 499

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MGF   L  L +PY S EA+EIA++ M FI+  +  AS  LA+ERG + ++ GS
Sbjct: 500 KIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQHLAEERGVFPAWYGS 559

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+                                K+ +K   MRNS    IAPT TI+ 
Sbjct: 560 EWE--------------------------------KEGIK---MRNSTTTTIAPTGTISI 584

Query: 775 ICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I G S SI+P +   +V+  ++G +   VN     + +   L+ E ++  +    G++ N
Sbjct: 585 IAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEELMRKVAET-GNLEN 643

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
           I  I +++KKI  TA E+DP W +   +  Q++ D   S  + +  + + + +   YR A
Sbjct: 644 I-EINEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKSDATREDIAKAYRMA 702

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
             +  K     R +S T    +       K     V +  +      +    T D  C
Sbjct: 703 KDLHCKGITVYRDKSKTVQVLTAGTTETKKTEEKEVIELVTKMPDKYLKIDSTFDPAC 760



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 34/171 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+  KI+ AI KA ++V+              + L ++ V RL    + 
Sbjct: 4   EVVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRD-------AETLADKVVERLKNIER- 55

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQD VE  LM S         + + Y+LYRE+R  +R  +        +   
Sbjct: 56  ---PTVEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIREEKESLGVKDDLKLT 112

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           L  +                 V EA   L+D   KI+  ET + M+  ++ 
Sbjct: 113 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 145


>gi|323450453|gb|EGB06334.1| hypothetical protein AURANDRAFT_54285 [Aureococcus anophagefferens]
          Length = 555

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/485 (32%), Positives = 256/485 (52%), Gaps = 20/485 (4%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
               ++++  +G   +    ++   +++ C G     +    +  +  + +YDG++  +L
Sbjct: 3   ADDDMQVVKRNGKKETVRYDKITSRIKKLCYGFDAKYIKPNQITQKVIQGVYDGVTTHEL 62

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +     ++  +  + P+++ + AR  +  L +    T     +K        L+     +
Sbjct: 63  DELAAQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEK--------LHKHVHPK 114

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             +          + +      +   + Y+RDF ++Y G + L   Y + ++G+  E PQ
Sbjct: 115 TKKPAALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQ 174

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377
              MRVA+G+   +      A E Y ++S   F  +TPTLFN+GT  PQLSSCFL  +  
Sbjct: 175 HMIMRVALGIHGDD---LAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKE 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L+V NDTA  
Sbjct: 232 DSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARY 291

Query: 438 VNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
           V+QGG+R+ G+   YLE WH D+E +LDL+KN G++  R  D+    WIPDLFMKRV  N
Sbjct: 292 VDQGGRRRKGSFAIYLEPWHADIEMWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEAN 351

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             W+L  P+E   L D +G +FE  YE YE      E    + I A  LW  +L    ET
Sbjct: 352 GFWSLMCPNECPGLADCHGAKFEALYERYEA-----EGCARKAIPAQQLWFAILDSQVET 406

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           G P++ +KD CN +S Q+H+G + SSNLCTEI   ++ +E AVCNL SINL +  +    
Sbjct: 407 GTPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLGSEVSGATH 466

Query: 617 DYDKL 621
           +  +L
Sbjct: 467 NSKRL 471


>gi|1657993|gb|AAB18239.1| ribonucleotide reductase [Thermoplasma acidophilum]
          Length = 857

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 204/839 (24%), Positives = 351/839 (41%), Gaps = 117/839 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMYD--GLSESDLETA 201
           ++  DGT++ F   ++ M + +A   +++     ++ +  +    + D    S  +++  
Sbjct: 5   VVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDAEQLADKVVARLKDKERPSVEEIQDV 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     T       +  V        L RE         ++A   E + +  +   +   
Sbjct: 65  VEDVLMTSKIDGKTFTDVAKS---YILYRE--------KRRAIREEKELMGVKDDLKLTL 113

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315
             VK       + D D   +    +  R  A     ++ LYD       G   E      
Sbjct: 114 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIVEALYDYIKYKKTGKVPENAEIIG 173

Query: 316 --MP-QAFFMRVAMGLALKETEKE------------------KRAVEFYNLLSSFHFMCS 354
              P Q   +R A G   ++   E                       F  ++SS  F+ +
Sbjct: 174 KVSPTQEEVLRRAFGYMKEDGIIEGTFEEFMDFIQTKGTSAGHYINRFEEVMSSLDFVPN 233

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG G  ++ +R     +
Sbjct: 234 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 293

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ + T   + QGGKR+GA    L   H D+ EF+ L K++ +   
Sbjct: 294 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFI-LSKDSENKVL 352

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              +++    + D F  ++  +    L +P                              
Sbjct: 353 SNFNISVG--VTDDFFDKLDNDDYVDLVNPRT---------------------------K 383

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K+ ++I A  +W  ++   ++T  P + F D  N ++P ++VG + S+N C E  L    
Sbjct: 384 KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 442

Query: 595 EETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                CNLGSINL  +     + D+D+L  T+ TA R LD+VID N   +E+ KK     
Sbjct: 443 ---ESCNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMT 499

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+MGF   L  L IPY S EA+EI ++ M FI+  +  AS  LA+ER  + ++ G
Sbjct: 500 RKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQALAEERAVFPAWYG 559

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+                                K+ +K   MRNS    IAPT TI+
Sbjct: 560 SEWE--------------------------------KEGIK---MRNSTTTTIAPTGTIS 584

Query: 774 NICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I G S SI+P +   +V+  ++G +   VN     + ++  ++ E ++  +    G++ 
Sbjct: 585 IIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEELMRQVAET-GNLE 643

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
           N++ I +++KKI  TA EIDP W +   +  Q++ D   S  + +  + + + +   YR 
Sbjct: 644 NVK-INEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINMRSDATREDIARAYRM 702

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
           A  +  K     R +S T    +       K     V +  +      +    T D  C
Sbjct: 703 AKDLHCKGITVYRDKSKTVQVLTAGTAETKKPEEKEVIELVTKMPDKYLKIDSTFDPAC 761



 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 34/171 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+ +KI+ AI KA ++V+              + L ++ V RL    + 
Sbjct: 4   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKD-------AEQLADKVVARLKDKER- 55

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E+IQD VE  LM S         + + Y+LYRE+R  +R  +        +   
Sbjct: 56  ---PSVEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIREEKELMGVKDDLKLT 112

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           L  +                 V EA   L+D   KI+  ET + M+  ++ 
Sbjct: 113 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 145


>gi|14324305|dbj|BAB59233.1| ribonucleotide reductase [Thermoplasma volcanium GSS1]
          Length = 769

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 206/838 (24%), Positives = 351/838 (41%), Gaps = 116/838 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMY--DGLSESDLETA 201
           ++  DGT++ F   ++ M + +A   +++     ++ +  +  + +   +  +   ++  
Sbjct: 7   VVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRDAETLADKVVERLKNIERPTVEQIQDI 66

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     T   +   +  V        L RE         ++A   E + L  +   +   
Sbjct: 67  VEDVLMTSKIEGKIFTDVAKS---YILYRE--------KRRAIREEKESLGVKDDLKLTL 115

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315
             VK       + D D   +    +  R  A     ++ LYD       G   E      
Sbjct: 116 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIIEALYDFMEYKKTGKIPENAEKIG 175

Query: 316 ---MPQAFFMRVAMGLALKETEKEKRAVEF------------------YNLLSSFHFMCS 354
              + Q   +R A     ++   E    EF                    ++SS  F+ +
Sbjct: 176 KVSLTQEEVLRRAFNYMKEDGIMEGTFEEFMDFLSTKGTSAHLYINKFEEMMSSLDFVPN 235

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG G  ++ +R     +
Sbjct: 236 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 295

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ + T   + QGGKR+GA    L   H D+ EF+ L K++ +   
Sbjct: 296 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFV-LSKDSENKVL 354

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              +++    + D F +++  +    L +P                              
Sbjct: 355 SNFNISVG--VTDEFFEKLDNDDYVDLINPRT---------------------------K 385

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV ++I A  LW  ++   ++T  P + F D  N ++P ++VG + S+N C E  L    
Sbjct: 386 KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 444

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSINL  +      DYD+L  T+  A R LD+VID N   +E+ KK     R
Sbjct: 445 ---ESCNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANKFPVEQIKKVTRMTR 501

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MGF   L  L +PY S EA+EIA++ M FI+  +  AS  LA+ERG + ++ GS
Sbjct: 502 KIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQHLAEERGVFPAWYGS 561

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            W+                                K+ +K   MRNS    IAPT TI+ 
Sbjct: 562 EWE--------------------------------KEGIK---MRNSTTTTIAPTGTISI 586

Query: 775 ICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I G S SI+P +   +V+  ++G +   VN     + +   L+ E ++  +    G++ N
Sbjct: 587 IAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEELMRKVAET-GNLEN 645

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
           I  I +++KKI  TA E+DP W +   +  Q++ D   S  + +  + + + +   YR A
Sbjct: 646 I-EINEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKSDATREDIAKAYRMA 704

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
             +  K     R +S T    +       K     V +  +      +    T D  C
Sbjct: 705 KDLHCKGITVYRDKSKTVQVLTAGTTETKKTEEKEVIELVTKMPDKYLKIDSTFDPAC 762



 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 34/171 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+  KI+ AI KA ++V+              + L ++ V RL    + 
Sbjct: 6   EVVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRD-------AETLADKVVERLKNIER- 57

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQD VE  LM S         + + Y+LYRE+R  +R  +        +   
Sbjct: 58  ---PTVEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIREEKESLGVKDDLKLT 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           L  +                 V EA   L+D   KI+  ET + M+  ++ 
Sbjct: 115 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 147


>gi|323650973|ref|YP_004243616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto]
 gi|323461613|dbj|BAJ77029.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto]
          Length = 789

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/823 (25%), Positives = 362/823 (43%), Gaps = 110/823 (13%)

Query: 145 LKIMMDD-----GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNM--YDGLSE 195
           + +++ D        + F+ +RL   ++     ++    + +  +S+  + +   + +  
Sbjct: 1   MTVVIKDKNKKRERRMEFDRERLISFIKRGFENIEVNPTTKESYISKVVRTIERREEIES 60

Query: 196 SDLETALIFSSRTLIEK--------------EPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
            D+   LI ++  L                   N+ +      L++L +        K +
Sbjct: 61  KDITKILIQNALVLTNDIKNDSGYVSPDYLVNTNWNRFARYVKLQELYKRAS-----KNR 115

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
                E    +        E+G+    +  +    +LV   N +  ERD  F++ GL  L
Sbjct: 116 SYDSKEKYGDFYGLIVTLTEKGLYTPDILANYTREELVKAGNSIVPERDELFDFAGLHSL 175

Query: 302 YDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLF 359
             RY +   + S  E+PQ  FM  A+ L + E  ++ ++A+E Y  LS+ +   +TPTL 
Sbjct: 176 SGRYCVKDFDKSVYELPQERFMIAALHLMMPEEKDRVEKAIELYWALSNLYLTLATPTLM 235

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N+G     LSSCF+ T  D L GIF    + +  +K   G+G  +  +R  G+ I G  G
Sbjct: 236 NAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFGKLRATGSDIRGHKG 295

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
            + G++ ++K  ++TAV+V+Q G+R GAV  YL+ WH D+E+F+DLR NTGD  +R +++
Sbjct: 296 AASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDLRLNTGDKSKRAYNV 355

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------------EIAYEN 524
            T   IPD FM++V +   + LF P E+        ++F               + A+  
Sbjct: 356 FTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLGEKETPNPIDHAWTY 415

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           +            R++ A+ L ++ +    ETG P++ ++D  N  +P  H G+++SSNL
Sbjct: 416 HYYLCVDNNNLDKRRVPAIELKKRYMKAQLETGIPYMFYRDTVNRNNPNSHSGMIYSSNL 475

Query: 585 CTEITLNSSSE---------------------ETAVCNLGSINLLAHFANNQFDYDKLAS 623
           C+EI  N S                       +   CNL S+ +     +   +      
Sbjct: 476 CSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNRTEKDGVTE-----R 530

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            I+  +R LDNVI +    + +A+ +N  +RA+G G  G  + L    I + S +A+E  
Sbjct: 531 VIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIMWDSEQAIEYI 590

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            +  E I  + I AS  L +E+G+Y  F+GS W  G              +       + 
Sbjct: 591 SKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG--------------EWFEERDLNS 636

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W E+K+      MRN    AIAPT   + I G +  IDP +  +Y +        ++ 
Sbjct: 637 PEWLEVKELASKY-MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFERKKDFHLPILV 695

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
             L    K    +   M  +               ++ K++   A     +W I+  + R
Sbjct: 696 PELNQ--KTWFFYKPTMKMEY--------------ENEKQL---AH----LWAIKHNAAR 732

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           QK++DQA S N Y+  +   K    ++ + W  G+KT+YY RS
Sbjct: 733 QKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 775


>gi|195953681|ref|YP_002121971.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933293|gb|ACG57993.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 1005

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 227/643 (35%), Positives = 346/643 (53%), Gaps = 64/643 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVE----------------------EACSGLQDVSSKIVL 182
           ++++   G     +  ++  ++E                           L +++   ++
Sbjct: 1   MEVIKRSGAREKLDLLKIRTVLENALSLLKEWKTTKDISAQDIEEWTMEDLNEINIDEIM 60

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
            +   N++DG+  + +   ++ S  T    +P Y  +    LL+++ ++    +Y     
Sbjct: 61  EDIEINIFDGIETAAIFQHILHSLLTRAIDDPIYDAMARNVLLQRIYKQAFGGMYSP--- 117

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-DLVYLANDLKYERDFAFEYLGLQIL 301
                 +  Y E F  YI+  V+  LL E +  + DL  LA +L  +RD   ++ GL  L
Sbjct: 118 ------KKAYKELFIDYIDNAVELGLLDEKLASYYDLEMLALELVPKRDQLLKFNGLYNL 171

Query: 302 YDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTP 356
            DRY +     G+ +E PQ F+MRVAMG+AL E   E     A+EFY+++SS  F+ STP
Sbjct: 172 MDRYLIKDLDTGNILEAPQWFWMRVAMGVALVEKTPEDRNHWAIEFYHMMSSMEFIPSTP 231

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           TLFNSGTR PQLSSCF+    DDL  IF  +++  ML K++GG+G   T +R   + I  
Sbjct: 232 TLFNSGTRFPQLSSCFVVDEEDDLSKIFETVKQVGMLNKHAGGVGLPATKLRAKDSIIRS 291

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
             GKS G+IPFLK+ ++T  AV+QGG+R+G+  A LE WH+DV +F+  ++  GDD +R 
Sbjct: 292 IQGKSSGIIPFLKIIDETITAVSQGGRRRGSALASLEPWHLDVFDFVRTKRKWGDDSQRF 351

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            ++  A ++ D FM+RV +N  W LF P +   L   YGK+F   Y    R+A  G+I+ 
Sbjct: 352 KNLKIALFLNDEFMRRVEENGDWYLFDPADCPKLVSTYGKKFSREYSKCIRKALSGKIR- 410

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            +KI AV L+++ +    +TG PW TFKDP NIR P +H G + ++NLCTE  L S+ + 
Sbjct: 411 HKKIKAVELFKEAIENTIQTGEPWYTFKDPINIRHPNKHTGTILTTNLCTEQLLVSTYDS 470

Query: 597 TAVCNLGSINLL--------------------------AHFANNQFDYDKLASTIRTAVR 630
              CNLGS+ L                              +NN FD++K  + IR A+R
Sbjct: 471 IESCNLGSLVLPRALLTHFRVNEHAQPLNSSENGSKHTKFLSNNTFDWEKFKAVIRKAIR 530

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            LDNVID N + +E  +K     R IGLG MG+Q  +  L +P  S EA+++ D+  E +
Sbjct: 531 FLDNVIDANYYALEAVEKGTKQSRKIGLGFMGYQDMIEKLKLPVDSKEALKLLDKIGETM 590

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           S+ AI  SVELA+ERG Y +F GS W +G+ PID++  L   R
Sbjct: 591 SYVAIETSVELAKERGTYPNFDGSDWSKGILPIDTLEHLFRER 633



 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/194 (35%), Positives = 108/194 (55%), Gaps = 2/194 (1%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+EL+++VK  G+RN+    +APTATI+ I G SQS +P Y  +Y ++N++G F  VN  
Sbjct: 746 WEELREKVKQ-GIRNACQTTLAPTATISIIAGTSQSFEPYYALVYSRTNIAGRFLEVNEN 804

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            + +LK+  LWD  +  D+    GSI +I+ IP ++K I+ TA+EID    I+ A+  QK
Sbjct: 805 FIRDLKKLGLWD-RLREDVLLQQGSIQDIKEIPQEIKDIYKTAYEIDTEVYIKQAAVLQK 863

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           WID + S NLY +    +K+  IY +AW  GLK TYY    +    E   +     +  +
Sbjct: 864 WIDSSISRNLYFNTRDPQKIMEIYLKAWKYGLKATYYAFMPAKIKTEGKYVHEDIKEPQS 923

Query: 926 VPVTDPNSSTHSLG 939
               + + +     
Sbjct: 924 SQDKEEDKARALSA 937



 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 13/80 (16%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA--FMAVEGKGASRSIRVQDI----------IKNLT 76
          ++VIKR+G     D  KI   +  A   +         S +  +           I  + 
Sbjct: 1  MEVIKRSGAREKLDLLKIRTVLENALSLLKEWKTTKDISAQDIEEWTMEDLNEINIDEIM 60

Query: 77 EQTVTRLLQHNKSALIV-HI 95
          E     +    ++A I  HI
Sbjct: 61 EDIEINIFDGIETAAIFQHI 80


>gi|283477830|emb|CAY73746.1| nrdA [Erwinia pyrifoliae DSM 12163]
          Length = 693

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/717 (24%), Positives = 278/717 (38%), Gaps = 69/717 (9%)

Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
           +I ++ P+Y  + AR  +  LR++                M           +E G    
Sbjct: 1   MISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEMGKYDP 49

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVA 325
            L       +   +   + + RD  F Y  ++ L  +Y     ++G   E  Q  ++ VA
Sbjct: 50  HLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFLYILVA 109

Query: 326 MGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
             L        +      FY+ +S+F     TP +    T   Q SSC L    D L  I
Sbjct: 110 ACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSI 169

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
                          G+G +   +R LG+ I G      G IPF K       + +QGG 
Sbjct: 170 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGV 229

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   +   WH +VE  L L+ N G +  R   M+    +  +  +R+ +    TLFS
Sbjct: 230 RGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGEDITLFS 289

Query: 504 PDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           P +V  L+D +     EFE  Y  YE+     +++    + AV L+  M+     TG  +
Sbjct: 290 PSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKLR----VKAVDLFSLMMQERASTGRIY 345

Query: 561 ITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQF 616
           I   D CN  SP       V  SNLC EI L +   +      G I L            
Sbjct: 346 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFNLGAIE 405

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
             D L      AVR LD ++D   + I  AK+     R +G+G++ F   L    + Y+ 
Sbjct: 406 SLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGVRYSD 465

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
             A  +  ++ E I +  + AS ELA E+GA   F  + + QG+ PID+     +     
Sbjct: 466 GSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLDAI--- 522

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796
             N    L W+ L++ VK  G+RNS   A+ P+ T + I   +  I+P   ++ +K++  
Sbjct: 523 -CNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIKASKD 581

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G    V              +  ++ D+  +DG +                         
Sbjct: 582 GILRQVVPEYERL-----KDNYELLWDMPNNDGYLQ------------------------ 612

Query: 857 IESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                  QK++DQA S N   D           K+L      A+  G+KT YY  +R
Sbjct: 613 --LVGVMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQNTR 667


>gi|209972894|ref|YP_002300341.1| gp2.9 [Bacillus phage SPO1]
 gi|209871214|gb|ACI90970.1| gp2.9 [Bacillus phage SPO1]
          Length = 756

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 221/796 (27%), Positives = 352/796 (44%), Gaps = 117/796 (14%)

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           +E    G +D   +   ++  K +  G    D+ T    +   +    P +  + AR +L
Sbjct: 14  LEFVLRGHEDSKVETYRTQVEKAIARG---EDINTITNLALVRVDIDTPEWNFIAARSIL 70

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             L  +       +              +     I  G     L E   + ++    + +
Sbjct: 71  FDLYYKAGQLRGDQNP-----------VQRIKELINNGQYGSFLLEKYTEDEINQAYSFI 119

Query: 286 KYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQAFFMRVAMGLALKETE--KEKR 338
             ERD   ++ G+ +L DRY              E+PQ  ++ +A+ L   E    +   
Sbjct: 120 DTERDLLLDHSGIMMLNDRYLFKYKDSKGNMHPYELPQERWLTIALTLMQDEKPEKRMDL 179

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             + Y +LS+ +   +TPT+ N+G    QLSSCF+ TV D L  I+   +++AM++K+ G
Sbjct: 180 VKKAYWVLSNLYITVATPTMGNAGRPDGQLSSCFIGTVEDSLDNIYDNNKDSAMVSKFGG 239

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G     +R L ++I G  GKSQGVIP++K   +TA +V+Q G+RKGA+  YL+ WH D
Sbjct: 240 GIGVYMGKIRSLNSYIRGMKGKSQGVIPWIKGLENTANSVDQLGQRKGAIAVYLDIWHKD 299

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR---------VTQNAGWTLFSPDEVSD 509
           V EFL +  N GD+RR+  D+     +PDLFM++         V  +A W LF P EV  
Sbjct: 300 VMEFLQIGTNNGDERRKARDVFPGLCVPDLFMEKLQPNPETGKVDPDAKWYLFDPHEVRM 359

Query: 510 ----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
                       +     F   Y           +    ++    + +  +  L ETG P
Sbjct: 360 VMGYSLEDSYDEEEGAGTFRKRYMECV----NSPLLSRTEVLVKDVAKAFMVSLMETGMP 415

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------------ 595
           ++ F+D  N ++P +H G+++ SNLCTEIT N S                          
Sbjct: 416 FMFFRDEVNRKNPNKHAGMIYCSNLCTEITQNMSPTVQVEEYVENEDTDEAMIVYKVKPG 475

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL S+NL   + +       L   I   VR+LDNVID+N    ++A  +N  +RA
Sbjct: 476 DYVVCNLSSVNLGKAYPSGH-----LEDIIDIQVRMLDNVIDVNNLPRKQATLTNKKYRA 530

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG  G+   L +  I + S E+VE AD+  E I++ A+ AS ++A+E+G Y +F+GS 
Sbjct: 531 IGLGTFGWHHLLAVSGIKWDSEESVEFADKVYEKIAYLALRASADIAKEKGTYRAFEGSD 590

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           +  G +          +R     +  S   WD LK+     G+RN++ +A+AP    A I
Sbjct: 591 FHTGDYF--------NIRGY--KSEGSEHDWDTLKEDCMNTGIRNAHVLAVAPNGNTALI 640

Query: 776 CGVSQSIDPSYQN--LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            G +Q ID  Y    +Y +        V+                               
Sbjct: 641 AGSTQGIDAFYTGTGIYYEEKKDFKIPVIAP----------------------------- 671

Query: 834 IERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            +  P        + AF++   + I   + RQK IDQ+ S N+Y+  +   K +  I   
Sbjct: 672 -DMSPKTFPYYWKSGAFDVSHEYTIRQNAMRQKHIDQSVSFNIYIKSDIKFKDILNIINT 730

Query: 892 AWLMGLKTTYYLRSRS 907
            W   LKTTYY R +S
Sbjct: 731 CWKNKLKTTYYFRGQS 746


>gi|156564206|ref|YP_001429716.1| nrd alpha subunit [Bacillus phage 0305phi8-36]
 gi|154622903|gb|ABS83783.1| nrd alpha subunit [Bacillus phage 0305phi8-36]
          Length = 767

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 209/792 (26%), Positives = 352/792 (44%), Gaps = 108/792 (13%)

Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225
           +E A     ++ +  ++ +  +  +    +  L  ++ ++   +    P++  V A   L
Sbjct: 22  LERASKE-YNLDATKIIEKVKRLSHTE--DKALHNSIFYALNNIDMGAPDWTFVAANMKL 78

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           +++ +       +    +   +    Y +      E G+ +  +  S  + ++  +   +
Sbjct: 79  QQMYKTA----SENRGYSRSLKYGSFY-KLIKTLTEMGIYSPAILASYSEEEINEIGRMI 133

Query: 286 KYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEF 342
              +D  F ++GL +L DRY      GS  E+PQ   M +A+   + E +  +     E 
Sbjct: 134 DPSKDSLFNFIGLFLLNDRYAATDYQGSLYELPQERLMMIAVTTMINEPKATRLAHIKEL 193

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           Y  LS+ +   +TPT  N+G  + QLSSCF+  V D L GI+ +  + A L+K  GG+  
Sbjct: 194 YWALSNLYATAATPTFANAGKSYGQLSSCFIDKVDDSLDGIYLSNMDAARLSKDGGGVAL 253

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            ++ VR LG+ I G  GKS G  P++K+ N TA+ V+Q G+RKGA   Y+   H D+ +F
Sbjct: 254 YFSKVRALGSPIKGFEGKSSGTTPWIKMFNQTAITVDQLGQRKGAFAIYMCLDHKDIMKF 313

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDL-- 513
           L+L  N GD+  R  ++ T   +PDLFMK++ +          W  F P ++        
Sbjct: 314 LELGLNNGDEADRAREIFTGVAVPDLFMKKLDEVDENGRSIGQWHTFCPHQIKQHMQWKD 373

Query: 514 -----------YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                      Y ++    YE    +A    +       A+ +  +++ +  ETG P++ 
Sbjct: 374 ENGNLLTLDDFYDEKDTKYYEEKYMEAVNNPLLPRDTHRAMDIMVRIMEIQLETGMPYMF 433

Query: 563 FKDPCNIRSPQQHVG-----VVHSSNLCTEITLNS--------------------SSEET 597
           ++D  N  +P +HV       ++ SNLCTEI  N                     S  E 
Sbjct: 434 YRDQVNRMNPNKHVHGIGRTAIYCSNLCTEIAQNQVSSMIIGEYIDENENIHMVRSPGEY 493

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
            VCNL S+NL             LA  IR   R+LDN+IDIN  ++ +A  +N  +R IG
Sbjct: 494 VVCNLASVNLAKAVPAGV-----LARVIRIVTRMLDNIIDINTISVLQAGITNKRYRPIG 548

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           +G  G+   L +L + + S  AV  AD   E  ++H I +SVELA+E+G Y  F+GS W 
Sbjct: 549 MGAYGWHHLLAILGLDWESEAAVNYADTLYEEFAYHVIDSSVELAKEKGTYKYFEGSAWH 608

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
            G              +           W  LK++V   G+RN   MA+AP AT A + G
Sbjct: 609 TG--------------EYFDQRDYVSAKWKALKEKVAKFGVRNGWMMALAPNATTAKVGG 654

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +   DP       +   +  F V                                   +
Sbjct: 655 STDGNDPITAVEGAEEKGNFKFKVTAP-------------------------------GL 683

Query: 838 PDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
             +   ++  T   ID +W ++  +++Q+ IDQ+ S NLY+  +  G +L  I++ A  +
Sbjct: 684 DHNTYNVYRKTRHHIDQLWSVKQTAKKQRHIDQSISFNLYVASDIDGAELLNIHKTAHKL 743

Query: 896 GLKTTYYLRSRS 907
           G+KTTYY++  S
Sbjct: 744 GIKTTYYVKGES 755


>gi|16082440|ref|NP_394926.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma
           acidophilum DSM 1728]
 gi|10640815|emb|CAC12593.1| ribonucleotide reductase [Thermoplasma acidophilum]
          Length = 770

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/839 (24%), Positives = 352/839 (41%), Gaps = 117/839 (13%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMYD--GLSESDLETA 201
           ++  DGT++ F   ++ M + +A   +++     ++ +  +    + D    S  +++  
Sbjct: 7   VVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDAEQLADKVVARLKDKERPSVEEIQDV 66

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +     T       +  V        L RE         ++A   E + +  +   +   
Sbjct: 67  VEDVLMTSKIDGKTFTDVAKS---YILYRE--------KRRAIREEKELMGVKDDLKLTL 115

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315
             VK       + D D   +    +  R  A     ++ LYD       G   E      
Sbjct: 116 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIVEALYDYIKYKKTGKVPENAEIIG 175

Query: 316 --MP-QAFFMRVAMGLALKETEKE------------------KRAVEFYNLLSSFHFMCS 354
              P Q   +R A G   ++   E                       F  ++SS  F+ +
Sbjct: 176 KVSPTQEEVLRRAFGYMKEDGIIEGTFEEFMDFIQTKGTSAGHYINRFEEVMSSLDFVPN 235

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           +PTL N+GT+  QLS+CF+  V D +  IF  L+  A++ K  GG G  ++ +R     +
Sbjct: 236 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 295

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             T G + G + F+K+ + T   + QGGKR+GA    L   H D+ EF+ L K++ +   
Sbjct: 296 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFI-LSKDSENKVL 354

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              +++    + D F  ++  +    L +P                              
Sbjct: 355 SNFNISVG--VTDDFFDKLDNDDYVDLVNPRT---------------------------K 385

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           K+ ++I A  +W  ++   ++T  P + F D  N ++P ++VG + S+N C E  L    
Sbjct: 386 KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 444

Query: 595 EETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                CNLGSINL  +     + D+D+L  T+ TA R LD+VID N   +E+ KK     
Sbjct: 445 ---ESCNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMT 501

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+MGF   L  L IPY S EA+EI ++ M FI+  +  AS  LA+ERG + ++ G
Sbjct: 502 RKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQALAEERGVFPAWYG 561

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W+                                K+ +K   MRNS    IAPT TI+
Sbjct: 562 SEWE--------------------------------KEGIK---MRNSTTTTIAPTGTIS 586

Query: 774 NICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I G S SI+P +   +V+  ++G +   VN     + ++  ++ E ++  +    G++ 
Sbjct: 587 IIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEELMRQVAET-GNLE 645

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
           N++ I +++KKI  TA EIDP W +   +  Q++ D   S  + +  + + + +   YR 
Sbjct: 646 NVK-INEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINMRSDATREDIARAYRM 704

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
           A  +  K     R +S T    +       K     V +  +      +    T D  C
Sbjct: 705 AKDLHCKGITVYRDKSKTVQVLTAGTAETKKPEEKEVIELVTKMPDKYLKIDSTFDPAC 763



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 34/171 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G V  F+ +KI+ AI KA ++V+              + L ++ V RL    + 
Sbjct: 6   EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKD-------AEQLADKVVARLKDKER- 57

Query: 90  ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E+IQD VE  LM S         + + Y+LYRE+R  +R  +        +   
Sbjct: 58  ---PSVEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIREEKELMGVKDDLKLT 114

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195
           L  +                 V EA   L+D   KI+  ET + M+  ++ 
Sbjct: 115 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 147


>gi|224371724|ref|YP_002605888.1| ribonucleotide-diphosphate reductase subunit alpha
           [Desulfobacterium autotrophicum HRM2]
 gi|223694441|gb|ACN17724.1| NrdA [Desulfobacterium autotrophicum HRM2]
          Length = 736

 Score =  373 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/657 (26%), Positives = 275/657 (41%), Gaps = 81/657 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLL 346
                 L +L  RY      G  +E P   FMRVA  +A  E     +       FY ++
Sbjct: 11  EISEATLTVLKRRYLQKDKRGRVVETPGQMFMRVASYIAAAEKAHGNDPGVYRDLFYGIM 70

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +   F+ ++PTL N+GT   QL++CF+  V D + GIF  ++  A++ K  GG G  ++ 
Sbjct: 71  ARLEFLPNSPTLMNAGTDLGQLAACFVLPVEDSISGIFETVKNAALIHKSGGGTGFSFSR 130

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R   + +  T G + G + F+K+ N     V QGG R+GA  A L   H D+ EF+  +
Sbjct: 131 LRPKDSRVGSTGGVASGPVSFMKIFNVATEQVKQGGTRRGANMAVLRVDHPDIMEFILCK 190

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           + + D      + N +  + D FM +      + L  P +                    
Sbjct: 191 QASADLN----NFNISVGVTDEFMVKARTGLPYNLVDPRD-------------------- 226

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   +V   ++A  ++  M+   +  G P I F D  N  +P   +G + S+N C 
Sbjct: 227 -------GRVVGTLNATDVFEAMVKQAWHNGDPGIIFLDRINQDNPTPLLGEIESTNPCG 279

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           E  L         CNLGS+NL             DY  L  TI  AVR LD+ ID + + 
Sbjct: 280 EQPLLP----MEACNLGSVNLAKFVVEKKGKPTIDYASLGKTIALAVRFLDDTIDRSIYP 335

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++       +R IGLG+MGF   L  L +PY S  AV +A+E M F+   A  AS  LA
Sbjct: 336 LDEITAMVRGNRKIGLGVMGFADLLFALELPYNSDRAVALAEEVMAFVQSEARKASRALA 395

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           QERG + +F  S           +    + R                         RN+ 
Sbjct: 396 QERGVFENFDKS-----------VFRNDKDRR-----------------------FRNAT 421

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821
              IAPT T++ I G S  I+P +   ++++ M  + F  VN   +   + +  + EA++
Sbjct: 422 VTTIAPTGTLSIIAGSSSGIEPLFALSFIRTIMDNETFLEVNPHFMAVAQAQGFYSEALM 481

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             +    G+I  +  IP+ ++K+  TA ++ P W ++  +  QK  D A S  + L  + 
Sbjct: 482 EKIAKT-GTIKGMTEIPESVRKVFVTAHDVSPAWHVKMQAAFQKHTDNAVSKTVNLPRDA 540

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +   +  IY  A+  G K     R  S  +   S       +            T  
Sbjct: 541 TEHDVAEIYTSAFDFGCKGVTIYRDGSKANQVLSISGATAPQDRFSKSVRQRPETLE 597


>gi|301058132|ref|ZP_07199184.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [delta proteobacterium NaphS2]
 gi|300447764|gb|EFK11477.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [delta proteobacterium NaphS2]
          Length = 830

 Score =  373 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 174/735 (23%), Positives = 294/735 (40%), Gaps = 85/735 (11%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKAT-HHEMQCLYPEYFCR-YIEEGVKARLLHESM 273
           Y     RF    +R+  +              E+  L  +      IE  ++A+L    +
Sbjct: 20  YNWDDNRFSDFLVRKNAIDPDQAMDVSRFLRKEIAKLELQTITMPIIEHMIEAKLREFGL 79

Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE 332
                + L      ++        +++L  RY      G  IE P+  F RVA  +A  E
Sbjct: 80  SAMSPLRLDKSFFVKQGLELSDNAVRVLERRYLRQDKEGRAIETPEEMFARVAHHIAQAE 139

Query: 333 TE----KEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
                    + VE  FY L++ F F+ ++PTL N+G    QL++CF+  V D + GIF +
Sbjct: 140 KRYGGEDRIKDVEAVFYRLMTEFKFLPNSPTLMNAGRELGQLAACFVLPVEDSMDGIFDS 199

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+  A++ K  GG G  ++ +R   + +  T G + G + F+K+ N     V QGG R+G
Sbjct: 200 LKNAALIHKSGGGTGFSFSRLRPKKSRVGTTGGIASGPVSFMKIFNTATEQVKQGGTRRG 259

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A  A L   H D+ EF+D +KN  +      + N +  + D FM+ V  +  + L  P  
Sbjct: 260 ANMAILRVDHPDILEFIDCKKNNEELN----NFNISVGVTDAFMESVKADTNYDLIDPR- 314

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                                       +   +++A  ++  ++   +E G P I F D 
Sbjct: 315 --------------------------NGRKTGQLNAKEVYDALIQRAWENGDPGIVFLDK 348

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQFDYDKLA 622
            N  +P   +G + S+N C E  L         CNLGSINL             DY  L 
Sbjct: 349 VNQDNPTPGLGEIESTNPCGEQPLLP----MEACNLGSINLAKFVVDTDEGPAVDYAGLK 404

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +R +V  LDN ID++ + + +  +    +R IGLG+MGF   L+ L IPY S +A+E 
Sbjct: 405 EVVRESVHFLDNTIDMSRYPLPEIGEMVRGNRKIGLGVMGFADLLYQLRIPYDSEKALET 464

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           A+  M F+   +  AS +LA+ERG + +F  S              + + R + +    +
Sbjct: 465 AEAVMGFVQEASHQASRQLAEERGVFGNFDKS--------------VFKRRKDCSYRNAT 510

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801
                                         + I G S  I+P +   + ++ M  D    
Sbjct: 511 TTTIAPTGTL--------------------SIIAGCSSGIEPLFALSFARNVMDNDRLVE 550

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
            N +     K++  +   ++  +    G+I NI  IP + + +  TA +I P W +   +
Sbjct: 551 TNPYFEETAKKKGYFSSELMD-IVAQKGTIHNINEIPAEDRAVFVTAHDIVPEWHLRMQA 609

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             Q+  D A S  + L  + + + +  +Y  A+ +  K     R  S  +   S      
Sbjct: 610 AFQRHTDNAVSKTVNLPRDATVEDVKEVYDLAYELSCKGVTIYRDGSKENQVLSFTDKKK 669

Query: 921 GKLNAVPVTDPNSST 935
                          
Sbjct: 670 KTHGRFMTAVEERPE 684


>gi|238879998|gb|EEQ43636.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 583

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 202/577 (35%), Positives = 306/577 (53%), Gaps = 24/577 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI +  G    F+S ++  ++EE    L D+    ++    + +   L+  +L T +   
Sbjct: 3   KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             + +   P+YA +  R    KL  +V  +  +  ++           +Y  R       
Sbjct: 63  IASRVIYHPDYAILAGRIETRKLYLKVPYSFSENVERLR---------KYRPRKSNSYSP 113

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                  ++     +L   +   RD+   Y G++ L   Y L I+G   E+PQ  FMRVA
Sbjct: 114 ISSAFYKVVKKHGEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVA 173

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384
           +G+   +        E Y+L+S  +F+ ++PTL+N+G+    LSSCFL  + DD + GIF
Sbjct: 174 IGIHQND---INAIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIF 230

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443
             L E A+++K SGG+G     +R  G++I  TNG S G++P L+V N+TA  V+QGG K
Sbjct: 231 KTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGK 290

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R GA   Y+E WH D+ + L++RKN G++  RT D+    WIPDLFMKRV +N+ WTLFS
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
           P+E   L D+YG+EFE  Y  YE +          K+SA  LW  +L    ETG P++ +
Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEGFGT------KVSAHKLWLAILHSQTETGGPYMLY 404

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYD 619
           KD CN +S Q+++G + SSNLC EI   SS +ETAVCNL S+ L  +    +    FD++
Sbjct: 405 KDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFE 464

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL S  +   R L+ VID+  + +E A+ SN  HR I LG+ G       L +P+ S  A
Sbjct: 465 KLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMA 524

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
             +  +  E I   A+ ASVELA + G Y + +    
Sbjct: 525 KTLNIQIFETIYHAALEASVELAMKEGPYETSRAHRH 561


>gi|323143006|ref|ZP_08077712.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas
           hippei YIT 12066]
 gi|322417200|gb|EFY07828.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas
           hippei YIT 12066]
          Length = 591

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 177/679 (26%), Positives = 279/679 (41%), Gaps = 102/679 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   +D  F+ LG+  L + Y           PQ  F  V+          ++ A   Y+
Sbjct: 5   IDLTKDNLFDDLGITRLKESYMRPEEK----SPQERFAFVSETFG----SDKEHAQRIYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             S      STP L    T      SCFL+ + D   G+   L E   L+          
Sbjct: 57  YASRHWLSFSTPILSFGRTSQGLPVSCFLSYMEDSADGLIETLSEVNRLSMLG------- 109

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
               G+   I   + KS GV+P LK+ +   +A  QG  R+G+  A+L+  H D+  F++
Sbjct: 110 -GGIGIHLGIRSADEKSVGVMPHLKIYDAACLAYRQGTTRRGSYAAFLDISHPDIIPFIE 168

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK TGD   RT +++    I D FM+++T+                       +   ++
Sbjct: 169 MRKPTGDQNMRTLNLHHGINISDAFMQKITK--------------------CMQDDNADD 208

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVGVVHS 581
             +  D    K+   +SA  LW+++L +  +TG P++ F D      P         ++ 
Sbjct: 209 SWQLIDPHSKKIIETVSARDLWQRILELRMQTGEPYLIFTDTAEKALPHWLKTKNLHING 268

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLCTEI L ++ + TAVC L S+NL         ++   +  I   +  LDNV+     
Sbjct: 269 SNLCTEIFLPTNEQRTAVCCLSSLNLE-----YFDEWRHDSQFIDDVMEFLDNVLQYFIE 323

Query: 642 TIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
               + K    S    R++GLG +GF S L    IP+ S  A  I  +    I      A
Sbjct: 324 HAPNSIKRAKLSAFKERSVGLGALGFHSYLQKKGIPFESVIAKSINKQIFSHIRQCCELA 383

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
              L   RG                                        D     V    
Sbjct: 384 DKRLCALRGPCP-------------------------------------DASDAGVMR-- 404

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            R S+ MAIAP A+ + I G  S SI+P   N+Y +  +SG +   N  L   LK+ +L 
Sbjct: 405 -RFSHWMAIAPNASSSLIVGNTSPSIEPRRANVYRQDTLSGAYITKNRHLQQALKELNLD 463

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E + +D+  HDGS+ +++ +P  ++ +  TA EID  ++I+ A+ RQ++IDQ QS+NL+
Sbjct: 464 TEEIWTDIIAHDGSVQHLDILPQQIRDVFKTAQEIDQRFIIDLAADRQQFIDQGQSVNLF 523

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
              + S K L   +  AW  GLK+ YY RS                K + + ++      
Sbjct: 524 FPADVSIKYLHACHYLAWKKGLKSLYYCRS------------DKLRKADRIGISIKRQKI 571

Query: 936 HSLGIPSSCTSDTECEVCQ 954
                  S  +D  C  C+
Sbjct: 572 EDDINMQSLLNDNTCLACE 590


>gi|317472118|ref|ZP_07931450.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA]
 gi|316900522|gb|EFV22504.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA]
          Length = 676

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 199/681 (29%), Positives = 338/681 (49%), Gaps = 65/681 (9%)

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSS 206
           +++      F    L   ++     LQ+  S  +L+E +++ + +G+ + +    L+ ++
Sbjct: 24  ILESFRTEKFPIGDLLKSIQN--EFLQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAA 81

Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             L  +E P +  + AR  + +    V   + +   +  + ++  L         ++ + 
Sbjct: 82  AELTSQEAPKWENIAARLKILEFESVVKNNLEEYQIRNFYEKIVFLS--------QQNLY 133

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324
              + ++  + ++   ++ ++ ER+  F Y GL++L  RY +    G+ +E PQ  FM +
Sbjct: 134 GDYILKNYAEDEIHLFSSWIRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGI 193

Query: 325 AMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           AM LA+KE  ++ +    FY++LS      +TPTL N+   + QLSSCF+ TVPD L GI
Sbjct: 194 AMHLAMKETEDRNQWVKRFYDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 253

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + ++   A ++K+ GG+G  +  VR  G+ I G  G + GVI ++++ANDTAVAV+Q G 
Sbjct: 254 YRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGM 313

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R+GAV  YL+ WH D+ EFL LR N GD+R + HD+  A   PD F ++   N    W L
Sbjct: 314 RQGAVAVYLDVWHRDLPEFLSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGNWYL 373

Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             P E+       L D YG E+   Y +        E    R I    + R ++    ET
Sbjct: 374 MCPHEILTVKGYALEDCYGTEWTEKYLDCV----LDERISKRVIPIKDIVRMIIKSAAET 429

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593
           G P+   +D  N  +P +H G+++ SNLCTEI  N S                       
Sbjct: 430 GTPFTFNRDHVNRANPNRHKGIIYCSNLCTEIAQNMSASGQTEQKIEMIGGEEVVVTVTK 489

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S++L         DY++L+    +AVR LDNVID+N   +  A+ ++  +
Sbjct: 490 PGDFVVCNLASLSLGNLCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRY 546

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG+ G+   L    I + S E ++ A++    I + A++AS ++++E+G+Y  F G
Sbjct: 547 RPVGLGVSGYHHMLAKHKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPG 606

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S W  G              D       ++  W  L+ RVK  G+RN   +A APT++ +
Sbjct: 607 SDWQTG--------------DYFRKRDLTKGRWKALEDRVKKHGLRNGYLLAAAPTSSTS 652

Query: 774 NICGVSQSIDPSYQNLYVKSN 794
            I G +  +DP     +++  
Sbjct: 653 IITGTTAGLDPVMNRYFLEEK 673


>gi|303238293|ref|ZP_07324829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetivibrio cellulolyticus CD2]
 gi|302594339|gb|EFL64051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetivibrio cellulolyticus CD2]
          Length = 778

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/669 (25%), Positives = 286/669 (42%), Gaps = 85/669 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343
                  +++L  RY     NG  +E P+  FMRVA  +AL + +            EFY
Sbjct: 1   MNLTENAVKVLEKRYLSKDENGCLLEDPKGMFMRVAKAVALADKDFVSAKELKAIEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++ +  F+ ++PTL N+G    QLS+CF+  + D + GIF  ++  A++ K  GG G  
Sbjct: 61  DMMLNLEFLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRQKGASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K+  D      + N +  I + FM  V     + L  P                   
Sbjct: 181 SCKKDNSD----ITNFNISVGITEKFMSAVEAAGDYDLIDPHS----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      K   K++A  ++  ++ M +  G P I F D  N  +    +G + S+N
Sbjct: 220 ----------GKTVGKLNARYVFDIIIDMAWNNGEPGIIFLDRLNKDNVTPELGNIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         CNLGSINL     N     + DYDKL +T R AV  LDNVID+N
Sbjct: 270 PCGEQPLLPY----EACNLGSINLSLMIKNTDGVPEVDYDKLGNTARKAVHFLDNVIDVN 325

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +  +     R IGLG+MG+   L  L+I Y S +A+ +A++ M FI   +  AS+
Sbjct: 326 KYPLPEIDEMTRGTRKIGLGVMGWADMLCKLNIAYNSQKAIALAEKIMHFIQEESRKASI 385

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+++G +  +  S++           L  ++R+                         
Sbjct: 386 ELAEKKGVFPHYDKSIYK---------DLGIKIRNATTTTIAPTGTL------------- 423

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818
                        + I GVS  I+P +   Y+++ M   +   VN            + +
Sbjct: 424 -------------SIIAGVSSGIEPLFAISYIRNVMDNDELIEVNPLFKQIAVIDGFYSD 470

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
            ++  +  + G+I     IP  ++ + AT+ +I P W ++  +  Q++ D A S  + L 
Sbjct: 471 ELMRRIA-NKGTIHGFPEIPKSVQSVFATSHDISPEWHVKMQAAFQRYTDNAVSKTVNLR 529

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +E + + +  ++  A+    K     R  S   ++   +  V GK     V +       
Sbjct: 530 NEATKEDVSEVFWHAYKTYCKGVTIYRDGSR-DLQVLNIGKVKGKEQEATVEESVEIPTK 588

Query: 938 LGIPSSCTS 946
             IP     
Sbjct: 589 CIIPRQRPD 597


>gi|311993226|ref|YP_004010092.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31]
 gi|284178064|gb|ADB81730.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31]
          Length = 751

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/802 (22%), Positives = 317/802 (39%), Gaps = 82/802 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   GT   F  ++L  ++E  C     V    +      ++ DG++  D++ A   
Sbjct: 1   MKVIKSSGTSQEFTPEKLIKVLEWGCEN-TRVDPYELYQAIVPHLQDGMTTYDIQRAATK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            + ++I  +EP+Y  V +   +  LR++V      +            + +     +   
Sbjct: 60  VAASMISIEEPDYQYVASNLAMFNLRKQVYGQFEPR-----------SFIDQISFGVNHN 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
              + +       ++  L + + ++RDF   Y G   L ++Y +     G  IE PQ  F
Sbjct: 109 KYDKEVLAKWSAEEIALLESKIVHDRDFEMTYAGTMQLIEKYLVKDRSTGQIIETPQFAF 168

Query: 322 MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M + M L   +   +    + FY+ +S+      TP +  + T   Q SSC +    D L
Sbjct: 169 MLIGMTLHQDDGENRLVNTIRFYDAVSTKKISLPTPIMAGARTPTRQFSSCVVIEAGDSL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  + +          G+G +   +R  G+ I     K  GVIPF K       + +Q
Sbjct: 229 KSINKSAESIVEYISKRAGIGINAGMIRAEGSKIGFGEVKHTGVIPFWKHIQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE  L L+ N G D  R   ++    I DL  +R+ ++   T
Sbjct: 289 GGVRGGAATLYYPIWHLEVENLLVLKNNKGVDENRIRHLDYGVQINDLMFERLIKDDYIT 348

Query: 501 LFSPD----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSPD     + + +      F   YE  E+  D  +    +++ A  L    LT    T
Sbjct: 349 LFSPDIDAGRLYENYFKDAAAFREQYEALEKNPDVRK----KRVKARELIELFLTERSGT 404

Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSE-----ETAVCNLGSINLLAH 610
              +  F D      P  + V  +  SNLC EI L +        E A+C L +  L   
Sbjct: 405 ARIYPYFVDNVGDYGPFIRDVATIKQSNLCAEIALPTKDVYSEDAEIALCTLSAFVLGNF 464

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              +  D + +       VR LDN++    + +++A K     RA+G+G+  + + L   
Sbjct: 465 ---DWQDQETINELAEVQVRALDNLLSYQGYPVKEALK-ALKRRALGVGVTNYAAWLADN 520

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
              YA  +A ++  E  E + +  I AS++LA+E+G    +K + W +G  PID      
Sbjct: 521 FATYA--DANDLTHELFERLQYALIKASIKLAKEKGPCEYYKDTRWSRGELPIDWYNK-- 576

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             R +          W+ L+  +K  G+RNS   A+ P  + + +   +  I+P    + 
Sbjct: 577 --RIDQLAAPNYVCDWEALRAELKQYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVS 634

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           +K +  G F  V   +                              +  DL      A++
Sbjct: 635 IKESKEGSFNQVVPNV-----------------------------ELNADLYDY---AWK 662

Query: 851 ID---PMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTT 900
           +        +   +   KW+ Q+ S N Y D  + +K       +       W  G KT 
Sbjct: 663 LAKQGNKPYLTQVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMMDDLLYFWYFGGKTL 722

Query: 901 YYLRSRSATSVEKSTLKGVDGK 922
           YY  +R  +  +   ++    +
Sbjct: 723 YYHNTRDGSGNDDFEIEKPKAE 744


>gi|296170901|ref|ZP_06852438.1| ribonucleoside-diphosphate reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894450|gb|EFG74194.1| ribonucleoside-diphosphate reductase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 701

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/798 (22%), Positives = 303/798 (37%), Gaps = 136/798 (17%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-------VLSETYKNMYDGLSESDL 198
            +   DG L+ F+  R+E  +  A         ++       V          G+   + 
Sbjct: 13  NVRRRDGRLVPFDVARIETAIGRAAREAGHRDPQLPALLARSVADALVGRFRSGIPTVEG 72

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
              L+                 AR   + L                  ++   Y  Y  +
Sbjct: 73  IQDLVE----------------ARLTADGL-----------------DDVARAYAVYRRQ 99

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEM 316
           + E                      +L   RD        + +L +RY L  + G  +E 
Sbjct: 100 HAEL-----------------RATKELLGVRDELKLSVAAVTVLGERYLLRDDRGRPVES 142

Query: 317 PQAFFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371
                 RVA  +A  E +       + A  F  LL    F+ ++PTL N+GT    LS C
Sbjct: 143 TGEMMDRVADHVAGAEEKFRPGSSAQWAQRFSALLRGLEFLPNSPTLMNAGTELGLLSGC 202

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F+  V D L+ IF AL + A + +  GG G  ++ +R  G  +  T G + G + FL++ 
Sbjct: 203 FVLPVDDSLHSIFTALAQGADIHQAGGGTGYTFSHLRPTGDLVVRTGGTASGPLSFLRLF 262

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +  A  ++ GG+R+GA  A L+  H D+ +F+  +  +  +  +    N +  + D F++
Sbjct: 263 DYAAAVISMGGRRRGASMAVLDVSHPDIYDFVTAKSGSQTELNQ---FNLSVGVTDEFLR 319

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            V +     L +P                              K    +SA  L+  +  
Sbjct: 320 AVGRGGSHRLVNPRT---------------------------GKTAATVSAADLFTAICE 352

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
                G P + F D  N  +P   +G + ++N C E+ L         CNLGSINL    
Sbjct: 353 AAHRCGDPGLVFLDTINRANPTPALGRIEATNPCGEVPLLPY----ESCNLGSINLARMV 408

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                D+++L +    AVR LD+VID++     + + +    R IGLG+MG    L  L 
Sbjct: 409 GAGGVDWERLTAVAELAVRFLDDVIDVSRLPFPEVEAATTATRKIGLGVMGLAELLAGLG 468

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IPY S   V +A      ++  A +AS  LA+ERG + +F  S +  G  P         
Sbjct: 469 IPYDSERGVRLAARIARTVNRAAHAASERLAEERGPFPAFGHSRFA-GSAP--------- 518

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                                      RN+   +IAPT TI+ I G S  I+P +   Y+
Sbjct: 519 --------------------------RRNAQLTSIAPTGTISLIAGTSAGIEPMFAIAYI 552

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           ++ +      VN       + R  +   +I+++  H G +     +P +++    TA EI
Sbjct: 553 RAVIGRRLLEVNPCFDRLARDRGFYHPDLIAEIARHGG-VRRDPHVPAEVRAAFPTAAEI 611

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            P W +   +  Q+ +D A S  + L  E + + +  IY  AW   +K     R  S   
Sbjct: 612 APEWHLRMQAAVQRHVDAAVSKTVNLPAESTVEDVRTIYLAAWRARVKGITVYRYGSRAG 671

Query: 911 VEKSTLKGVDGKLNAVPV 928
              S +   +  L A   
Sbjct: 672 QVLSYVGTDEALLAADAT 689



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V +R+G +  FD ++I  AI +A             R   +   L       L+   +S
Sbjct: 13  NVRRRDGRLVPFDVARIETAIGRA-------AREAGHRDPQLPALLARSVADALVGRFRS 65

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E IQD VE  L   G   + R Y +YR + +++RA +        +   +  + 
Sbjct: 66  G-IPTVEGIQDLVEARLTADGLDDVARAYAVYRRQHAELRATKELLGVRDELKLSVAAVT 124

Query: 150 DDGTLISFNSKR 161
             G        R
Sbjct: 125 VLGERYLLRDDR 136


>gi|15839968|ref|NP_335005.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis CDC1551]
 gi|13880109|gb|AAK44819.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis CDC1551]
          Length = 735

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 187/811 (23%), Positives = 309/811 (38%), Gaps = 132/811 (16%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSE 184
            R   + +     ++   K+   DGTL+ F+  R+E  V  A   +      +   V   
Sbjct: 33  ERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKA 92

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
               +  G++  +     I                 AR                   +A 
Sbjct: 93  VADALGRGIAPVE----DIQDCVE------------ARL-----------------GEAG 119

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYD 303
             ++  +Y                +       +L   A  L   RD        + +L +
Sbjct: 120 LDDVARVY----------------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRE 162

Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPT 357
           RY LH   G   E       R A  +A  E + E       A  F  LL +  F+ ++PT
Sbjct: 163 RYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPT 222

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T
Sbjct: 223 LMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVAST 282

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +     
Sbjct: 283 GGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LP 339

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             N +  + D F++ V +N    L +P                              K+ 
Sbjct: 340 HFNLSVGVTDAFLRAVERNGLHRLVNPRT---------------------------GKIV 372

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
            ++ A  L+  +       G P + F D  N  +P    G + ++N C E+ L       
Sbjct: 373 ARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY---- 428

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IG
Sbjct: 429 ESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIG 488

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + 
Sbjct: 489 LGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFA 548

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +                                        RN+   ++APT TI+ I G
Sbjct: 549 RSGP------------------------------------RRNAQVTSVAPTGTISLIAG 572

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +  I+P +   + ++ +      VN       + R  + + +I+++    G +    R+
Sbjct: 573 TTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRL 631

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
           P +++    TA EI P W +   +  Q+ ++ A S  + L    +   +  IY  AW   
Sbjct: 632 PAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAK 691

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           +K     R  S      S+         A  
Sbjct: 692 VKGITVYRYGSREGQVLSSAAPKPLLAQADT 722



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 23/156 (14%)

Query: 1   MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49
           M P+   + G        + P     F +  K V      +V +R+G +  FD ++I  A
Sbjct: 11  MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + +A   V       +    D+   + +     L +      I  +EDIQD VE  L ++
Sbjct: 71  VTRAAREV-------ACDDPDMPGTVAKAVADALGR-----GIAPVEDIQDCVEARLGEA 118

Query: 110 GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
           G   + R Y++YR+ R+++R A++       +   L
Sbjct: 119 GLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 154


>gi|289446117|ref|ZP_06435861.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis CPHL_A]
 gi|289419075|gb|EFD16276.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis CPHL_A]
          Length = 736

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/798 (23%), Positives = 307/798 (38%), Gaps = 132/798 (16%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSE 184
            R   + +     ++   K+   DGTL+ F+  R+E  V  A   +      +   V   
Sbjct: 33  ERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKA 92

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
               +  G++  +     I                 AR                   +A 
Sbjct: 93  VADALGRGIAPVE----DIQDCVE------------ARL-----------------GEAG 119

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYD 303
             ++  +Y                +       +L   A  L   RD        + +L +
Sbjct: 120 LDDVARVY----------------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRE 162

Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPT 357
           RY LH   G   E       R A  +A  E + E       A  F  LL +  F+ ++PT
Sbjct: 163 RYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPT 222

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T
Sbjct: 223 LMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVAST 282

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +     
Sbjct: 283 GGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LP 339

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             N +  + D F++ V +N    L +P                              K+ 
Sbjct: 340 HFNLSVGVTDAFLRAVERNGLHRLVNPRT---------------------------GKIV 372

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
            ++ A  L+  +       G P + F D  N  +P    G + ++N C E+ L       
Sbjct: 373 ARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY---- 428

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IG
Sbjct: 429 ESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIG 488

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + 
Sbjct: 489 LGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFA 548

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +                                        RN+   ++APT TI+ I G
Sbjct: 549 RSGP------------------------------------RRNAQVTSVAPTGTISLIAG 572

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +  I+P +   + ++ +      VN       + R  + + +I+++    G +    R+
Sbjct: 573 TTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRL 631

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
           P +++    TA EI P W +   +  Q+ ++ A S  + L    +   +  IY  AW   
Sbjct: 632 PAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAK 691

Query: 897 LKTTYYLRSRSATSVEKS 914
           +K     R  S      S
Sbjct: 692 VKGITVYRYGSREGQVLS 709



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 23/156 (14%)

Query: 1   MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49
           M P+   + G        + P     F +  K V      +V +R+G +  FD ++I  A
Sbjct: 11  MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + +A   V       +    D+   + +     L +      I  +EDIQD VE  L ++
Sbjct: 71  VTRAAREV-------ACDDPDMPGTVAKAVADALGR-----GIAPVEDIQDCVEARLGEA 118

Query: 110 GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
           G   + R Y++YR+ R+++R A++       +   L
Sbjct: 119 GLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 154


>gi|253797502|ref|YP_003030503.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289552822|ref|ZP_06442032.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 605]
 gi|253319005|gb|ACT23608.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 1435]
 gi|289437454|gb|EFD19947.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 605]
 gi|328457287|gb|AEB02710.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis KZN 4207]
          Length = 706

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 186/798 (23%), Positives = 307/798 (38%), Gaps = 132/798 (16%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSE 184
            R   + +     ++   K+   DGTL+ F+  R+E  V  A   +      +   V   
Sbjct: 4   ERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKA 63

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
               +  G++  +     I                 AR                   +A 
Sbjct: 64  VADALGRGIAPVE----DIQDCVE------------ARL-----------------GEAG 90

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYD 303
             ++  +Y                +       +L   A  L   RD        + +L +
Sbjct: 91  LDDVARVY----------------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRE 133

Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPT 357
           RY LH   G   E       R A  +A  E + E       A  F  LL +  F+ ++PT
Sbjct: 134 RYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPT 193

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T
Sbjct: 194 LMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVAST 253

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +     
Sbjct: 254 GGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LP 310

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             N +  + D F++ V +N    L +P                              K+ 
Sbjct: 311 HFNLSVGVTDAFLRAVERNGLHRLVNPRT---------------------------GKIV 343

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
            ++ A  L+  +       G P + F D  N  +P    G + ++N C E+ L       
Sbjct: 344 ARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY---- 399

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IG
Sbjct: 400 ESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIG 459

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + 
Sbjct: 460 LGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFA 519

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
           +                                        RN+   ++APT TI+ I G
Sbjct: 520 RSGP------------------------------------RRNAQVTSVAPTGTISLIAG 543

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            +  I+P +   + ++ +      VN       + R  + + +I+++    G +    R+
Sbjct: 544 TTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRL 602

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
           P +++    TA EI P W +   +  Q+ ++ A S  + L    +   +  IY  AW   
Sbjct: 603 PAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAK 662

Query: 897 LKTTYYLRSRSATSVEKS 914
           +K     R  S      S
Sbjct: 663 VKGITVYRYGSREGQVLS 680



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 18/137 (13%)

Query: 15  FPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68
            P     F +  K V      +V +R+G +  FD ++I  A+ +A   V       +   
Sbjct: 1   MPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDD 53

Query: 69  QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128
            D+   + +     L +      I  +EDIQD VE  L ++G   + R Y++YR+ R+++
Sbjct: 54  PDMPGTVAKAVADALGR-----GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAEL 108

Query: 129 RAAQSHSKSDAPIAPKL 145
           R A++       +   L
Sbjct: 109 RTAKALLGVRDELKLSL 125


>gi|148262268|ref|YP_001228974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
 gi|146395768|gb|ABQ24401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter uraniireducens Rf4]
          Length = 565

 Score =  369 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 160/628 (25%), Positives = 264/628 (42%), Gaps = 76/628 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNL 345
                  L++L  RY L    G  IE P+  F R+A  +A  E             FY L
Sbjct: 1   MELSENALKVLRARYLLKDEQGRVIESPREMFGRIARSVAEAEKFYGDRACYWEERFYEL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LSS  F+ ++PT+ N+G    QL++CF+  V D + GIF  L+  A++ +  GG G  ++
Sbjct: 61  LSSLRFLPNSPTIMNAGKSPGQLAACFVLPVEDSMPGIFDTLKNAALILQSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F+K+ N     + QGG R+GA    L   H DV EF+ +
Sbjct: 121 RLRPKADIVRSTGGIASGPVSFMKIYNTATDVIKQGGARRGANMGILRIDHPDVLEFIRV 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++    D +   + N +  I D +M+ +  +  + L +P                     
Sbjct: 181 KR----DAKELANFNISLAITDAYMEALRADGEYQLVNPRT------------------- 217

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    K   ++ A  ++ +++   +ETG P + F D  N  +P    G   S+N C
Sbjct: 218 --------GKSAGRLRAGEVFGEIVASAWETGDPGLVFIDRLNRANPTPAAGSFESTNPC 269

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         C LGS+NL AH      DYD L   +  AVR LD+ ID+N + +  
Sbjct: 270 GEQPLLPY----EACVLGSLNLAAHVKGGVIDYDALGRDVAVAVRFLDDTIDVNSYPLPA 325

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++ +  +R IGLG+MG+   L LL IPY   +A  +A E M FI   +  AS  LA+ER
Sbjct: 326 IERMHKGNRKIGLGVMGWADMLVLLGIPYDHEKAFRLAREVMRFIRDASREASCALAKER 385

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +F GS++D    P         +     +                           
Sbjct: 386 GVFPNFAGSIYDAPHMPRLRNATTTTIAPTGTL--------------------------- 418

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
                  + I   S  I+P +   Y +  +  +   +N + +   K++  +   +  ++ 
Sbjct: 419 -------STIADCSSGIEPLFALAYKRFVLDSELVEINKYFLQMAKEQGFYSVELFQEVM 471

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
              G++  ++ IP  +K++  TA EI P   IE  +  Q++ D A S  + L      + 
Sbjct: 472 RR-GNLRQVKGIPSRVKRLFRTALEILPEHHIEMQAAFQEYTDNAVSKTINLPNRAKKED 530

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +   Y  A+  G K     R  +     
Sbjct: 531 VARAYLLAYEKGCKGITVFRYGARRGTL 558


>gi|154415929|ref|XP_001580988.1| Ribonucleotide reductase, all-alpha domain containing protein
           [Trichomonas vaginalis G3]
 gi|121915211|gb|EAY20002.1| Ribonucleotide reductase, all-alpha domain containing protein
           [Trichomonas vaginalis G3]
          Length = 614

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 163/635 (25%), Positives = 276/635 (43%), Gaps = 58/635 (9%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
           F    ++++  RY +H   G   E P+  F RVA  LA  ET+KEK   +F  ++ +F F
Sbjct: 20  FTSNAIKVMKARYLVHNEEGKVYETPEQMFTRVAKALASVETDKEKWTKKFEKVMMNFEF 79

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + +  TL N+G +   +S+C +  + D L  IF  LQ+ A+L +   G+G  +  +R  G
Sbjct: 80  IPAGRTLANAGAKTDLVSNCVVLHMEDSLDSIFQTLQDAALLQQAGSGIGFPFHKLRPAG 139

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
                T G S G + FL++  +    + Q G R GA  A +   H D+ EF+  ++  G 
Sbjct: 140 YKCKRTLGSSSGPLSFLRIYAEAFRIIQQHG-RHGANMAIMRVDHPDIIEFIHAKEQPG- 197

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +    D FM+RV +N             +    G++    Y   +  A R
Sbjct: 198 ---TYENFNFSVAFTDEFMERVIKNDP--------SPWMCKWNGEKMAPRYITRDA-AGR 245

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E      ISA  L  +++ + +  G P   F D  N  +P   +G +   N C E  L+
Sbjct: 246 VENIQPLTISAPELMNEIIHLAWTNGEPGCVFIDTVNKANPLPGLGPIECCNPCGEQFLH 305

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           S       CNLG+INL     + + D+  L    RTA+R+LDNV+ +    +++      
Sbjct: 306 SG----DACNLGAINLEKFVVDGKIDFKHLEEVTRTAIRMLDNVVSLTKFPVQRVTDMFT 361

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R IGLG+MG    L L+ +PY S E    A+E M+ +   AI  S  L  E+G++ +F
Sbjct: 362 NNRRIGLGIMGLADLLFLMKLPYDSEEGRACAEEVMKCVQDSAIDESKRLGLEKGSFPNF 421

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S+W   V                                     MRN++   +APT +
Sbjct: 422 EKSVWADKVPA-----------------------------------MRNTSLTNVAPTGS 446

Query: 772 IANICGVSQSIDPSYQNLYVKSN-MSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            + +  VS  ++P +   Y + N ++G     VN  L   L+    + + ++  +    G
Sbjct: 447 TSMLLDVSSGVEPYFALAYRRGNCLAGPMKPFVNKHLQKALEDCGCFTDKIMDKILET-G 505

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           ++ N+  +P+ L+++  T+ +I     I   +R QK    A S  +    E +   +   
Sbjct: 506 TLANVTEVPEQLRRVFVTSLDIKAEDHIAMQARVQKHCCNAISKTINFRREATEDDVRAG 565

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           + + W  G K     R+ S  +    T    D  +
Sbjct: 566 FIEGWKNGCKGLTVYRNGSRDAQVLETNVKNDKPV 600


>gi|254478745|ref|ZP_05092114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035310|gb|EEB76015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Carboxydibrachium pacificum DSM 12653]
          Length = 724

 Score =  368 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 176/655 (26%), Positives = 291/655 (44%), Gaps = 83/655 (12%)

Query: 299 QILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           ++  DRY L    G  +E  P+  F RVA  +A  E E+E     FY ++S + F+    
Sbjct: 11  KVFLDRYALKDREGKPVEKKPEEMFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGR 66

Query: 357 TLFNSGTRHP-QLSSCFLTTV--------PDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            L  +GT       +CF+  V         D    I   + +   +    GG+G +W+ +
Sbjct: 67  ILAGAGTGREVTYFNCFVIPVEANDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTL 126

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA++ G  G S G + ++  AN+ A  V QGG R+ A+   L  WH D+EEF+ ++K
Sbjct: 127 RPRGAYVKGVGGTSSGAVSWMLAANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK 186

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  +    N +  + D FM+ V Q+  W L  PD     +D      E   +  E 
Sbjct: 187 ----DLTKMQQANLSVAVSDAFMEAVAQDKMWKLEFPDTSHPNYDA-----EWKGDLNEW 237

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +A      V+++I A  LW K++T  +E+  P + F +  N  S   ++  + S+N C E
Sbjct: 238 KAKGYPTVVYKEIPARELWNKIVTAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGE 297

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           + L        VCNLG+INL+A   N + ++++L  T++ AVR LDNV+D+  + + + K
Sbjct: 298 LGLEPY----GVCNLGAINLVAFVENGRINFEELEETVKIAVRFLDNVLDLGAYVLPQNK 353

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R +GLGLMG   AL L+++ Y S E+++  +E ++ I   A  ASVELA+E+G 
Sbjct: 354 EMAQKLRRVGLGLMGLADALILMNLRYGSEESLKATEEIVKRIRDAAYRASVELAKEKGP 413

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  F    + +G      I  L +                 ++  +   G+RN+  +  A
Sbjct: 414 FPEFVADKYLKGQ----FIQRLPKD----------------IRDEIAKYGIRNATILTQA 453

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT T + + GVS  I+P++   YV+ + +G  TV +            W           
Sbjct: 454 PTGTTSILAGVSSGIEPNFAKEYVRKDRTGTHTVKH------------WLAD-------- 493

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
                              +A E+ P   ++  +  QK+ID + S  + L    +   +D
Sbjct: 494 --------------YPAFVSAHEVTPEEHVKMQAVLQKYIDSSISKTINLPRTATVDDID 539

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            IYR A+ +G K     R  S   V  +  K  +              T  +  P
Sbjct: 540 NIYRLAYELGCKGITVYRDGSREGVLVTDTKPQEKTKITERPPVLKGITKRIETP 594


>gi|298529116|ref|ZP_07016519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510552|gb|EFI34455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 745

 Score =  368 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 164/658 (24%), Positives = 284/658 (43%), Gaps = 83/658 (12%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VEFYN 344
                  +L  RY     +G  +E  +  F RVA  +A +E + ++ +         FY 
Sbjct: 15  LTPNAKTVLSKRYLRKGDDGQPLEDFKTMFWRVAASVAGEEDKYQESSYNSLDLGRSFYQ 74

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           LL    F+ ++PTL N+GT   QL++CF+  V D +  IF +++  A++ K  GG G  +
Sbjct: 75  LLVEGKFLPNSPTLMNAGTDLGQLAACFVLPVGDSMDEIFDSIKNAALIHKSGGGTGFSF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R   + +  T G + G + FLK+ N     V QGG R+GA    L   H D+ +F+ 
Sbjct: 135 SRLRPKDSRVGSTGGIASGPLSFLKIFNTATEQVKQGGTRRGANMGILRVDHPDIMDFIR 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +    D      +++ A  + + FM+ V   + ++L +P    +               
Sbjct: 195 AK--ERDGELNNFNLSVA--LTEKFMQSVESGSDYSLTAPQNNQETE------------- 237

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                         +++A  ++  ++   +E+G P I F D  N  +P   +G + S+N 
Sbjct: 238 --------------RLNAREVFSLLVHKAWESGDPGIIFLDRINKDNPTPGLGEMESTNP 283

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCH 641
           C E  L         CNLGSINL   ++       D++ L   +  +VR LDNVID++ +
Sbjct: 284 CGEQPLLPY----EACNLGSINLDRFYSPTAEGGIDWEGLREAVHLSVRFLDNVIDLSRY 339

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E+  +  H  R IGLG+MGF   L  L + Y S   +++ ++ MEF+   + SAS  L
Sbjct: 340 PLERITEMVHKTRKIGLGVMGFADLLFQLRVAYDSHRGLQLGEKIMEFVQRESRSASRIL 399

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           AQERG +  ++ S++ +                                        RN+
Sbjct: 400 AQERGPFPEYEHSIYARQNLGP----------------------------------YRNA 425

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820
               IAPT T++ I G S  I+P +   + +  + G+    VN  L   LK    + + +
Sbjct: 426 TTTTIAPTGTLSIIAGCSSGIEPIFALSFTRQVLDGERLLEVNPHLEEALKNTRSYSDKL 485

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           + D+    GSI  +E +  DL+ +  TA ++   + ++  +  QK+ D A S  + L  +
Sbjct: 486 MEDVAK-KGSIKQMEHLDQDLRDVFVTAMDVPAQYHLKMQAAFQKYTDNAVSKTVNLPFD 544

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            + + +  IY  A+ MG K     R         ST  G   + +             
Sbjct: 545 ATQEDVWQIYWMAYEMGCKGVTVYRDGCRAEQVLSTQDGEKARQDRASGKKSIRERPE 602


>gi|147677926|ref|YP_001212141.1| ribonucleotide reductase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274023|dbj|BAF59772.1| Ribonucleotide reductase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 573

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 162/624 (25%), Positives = 273/624 (43%), Gaps = 84/624 (13%)

Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSF 349
           +++L  RY     NG+ IE P+    RVA  +A  E +         + A  F+ ++ + 
Sbjct: 8   MKVLAGRYLRRDENGNVIETPEEMCWRVARCVAAAEEKFGADCKEVAEWAERFFAVMDAL 67

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N G    QL++CF+  + D +  IF  L+  A++ K  GG G D++ +R 
Sbjct: 68  EFLPNSPTLINCGPAGGQLAACFVLPLADSIEKIFSTLKYTAIIHKSGGGTGFDFSRLRP 127

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + + GT G++ G + F++V N     + QGG R+GA    L   H D+ EF+  +   
Sbjct: 128 KNSPVRGTGGRASGPVSFMRVFNAATEEIKQGGVRRGANIGILRADHPDIMEFIACKA-- 185

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D     + N +      F   V + + W L                            
Sbjct: 186 --DEGTFRNFNLSVAATGDFFTAVERGSRWPLSF-------------------------- 217

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                KV+R+  A  ++  +      +G P + F D  N  +P   +G + ++N C E  
Sbjct: 218 ---NGKVYREAEAREIFYSIARHAHASGEPGMLFIDSINRANPTPSLGQISATNPCGEQP 274

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         CNLGSINL         D+++L   ++ AVR LD+VI++N   + +  K+
Sbjct: 275 LLPY----ESCNLGSINLSRLTKGTGVDWERLGLLVQLAVRFLDDVIEVNRFPLPQIAKA 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R IGLG+MG+   L  L IPY S  A+ +A+E M FI   A  AS  LA++RG + 
Sbjct: 331 TLRTRKIGLGVMGWADMLFKLGIPYDSGAALALAEEVMSFILQKAREASAGLARQRGPFP 390

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           S++ S++   +                                     +RN+    IAPT
Sbjct: 391 SWRQSVYYPELP------------------------------------LRNATLTTIAPT 414

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK-QRDLWDEAMISDLKYH 827
            +I+ I G S  I+P Y  +Y +  +  +   V+N   +  L+ +        I      
Sbjct: 415 GSISAIAGTSSGIEPVYALVYSRLVLDDEKILVINKPFLQYLETEIKPESGENILKKLET 474

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
             S+ ++  I  + + +  TA EI P W ++  +  QK+ D A S  + L    +  ++ 
Sbjct: 475 GVSLQSLPAIKPEARAVFKTALEIAPDWHLKMQAAFQKYTDNAVSKTINLPANATVDEIA 534

Query: 887 FIYRQAWLMGLKTTYYLRSRSATS 910
            I+R+A+ +GLK     R+ S + 
Sbjct: 535 SIFRKAYQLGLKGVTVYRTGSRSG 558


>gi|120402409|ref|YP_952238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955227|gb|ABM12232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium vanbaalenii PYR-1]
          Length = 698

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 183/802 (22%), Positives = 304/802 (37%), Gaps = 127/802 (15%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
                 +P     ++   DGTL+ F+  R+E  V  A   +      +  +         
Sbjct: 2   KQKTPASPSKWPTQVRRRDGTLVPFDIGRIEAAVSRAACEVACADPDMPGTVA------- 54

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++ +D   + I +    I+       V AR                   +A   ++   Y
Sbjct: 55  VTVADALGSAI-APVEKIQD-----YVEARL-----------------GEAGLDDVARAY 91

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN- 310
             Y  R+ E                    A  L   RD        + +L +RY  H   
Sbjct: 92  IIYRNRHAEL-----------------RSAKALLGVRDELKLSLAAVTVLRERYLQHDER 134

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           G   E       R A  +A  E           A +F   L    F+ ++PTL N+G+  
Sbjct: 135 GHPTESTGEMMDRAARYVAAAEDRYLPGSSARWADQFATSLRRLEFLPNSPTLMNAGSDL 194

Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             LS C +  V D L  IF  L   A + +  GG G  ++ +R  G  I  T G++ G +
Sbjct: 195 GLLSGCVVLPVDDSLRSIFSTLGHAAEVQRCGGGTGFAFSRLRPAGDRIASTGGRASGPV 254

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            FL++ +  A  V+ GG+R+GA    L+  H D++EF+  +  +  +R    +++    +
Sbjct: 255 SFLELFDTAARVVSLGGRRRGACMGVLDVSHPDIQEFVTAKTQSP-ERLSHFNLSVG--V 311

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V +     L +P                              +   K+SAV L
Sbjct: 312 SDSFMRAVERGDVHRLVNPRT---------------------------GRTVAKVSAVEL 344

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +  +       G P + F D  N  +P   +G + ++N C E+ L  +      CNLGS+
Sbjct: 345 FDVICESAHACGDPGLVFLDTVNRANPVPRLGRIEATNPCGEVPLLPN----ESCNLGSL 400

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL     + + D+ +L      AVR LD+VID++ +  ++   +    R IGLG+MG   
Sbjct: 401 NLARMVTDGRIDWCRLRDVTALAVRFLDDVIDVSRYPFDELDAAGRATRKIGLGVMGLAE 460

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  L IPY S +AV +A   M  +   A   S +LA ERG + ++  S   +       
Sbjct: 461 VLASLGIPYDSDDAVRLAGRIMGRVQRVAHETSEQLAAERGPFPAYPDSRLTRP------ 514

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                                            RN+   ++APT TI+ I G +  I+P 
Sbjct: 515 --------------------------------RRNAQLTSVAPTGTISLIAGTTAGIEPM 542

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y ++ +      VN       ++R  + + +I+++    G  G    +P D++   
Sbjct: 543 FAIAYTRAVVGRHLLEVNPCFDRMARRRGFYTDELITEIARSGGVRGYRGDLPADVRAAF 602

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA EI P W +   +  Q+ +D A S  + L E  +   +  IY  AW   +K     R
Sbjct: 603 PTAAEISPEWHLRMQAAVQRHVDAAVSKTVNLPEAATADDVRAIYLSAWKAKVKGITVYR 662

Query: 905 SRSATSVEKSTLKGVDGKLNAV 926
             S      S         +A 
Sbjct: 663 YGSRQGQVLSYAAPPPQVPHAD 684



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
            P        QV +R+G +  FD  +I  A+ +A   V       +    D+   +    
Sbjct: 5   TPASPSKWPTQVRRRDGTLVPFDIGRIEAAVSRAACEV-------ACADPDMPGTVAVTV 57

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              L      + I  +E IQD VE  L ++G   + R Y++YR   +++R+A++      
Sbjct: 58  ADAL-----GSAIAPVEKIQDYVEARLGEAGLDDVARAYIIYRNRHAELRSAKALLGVRD 112

Query: 140 PIAPKL 145
            +   L
Sbjct: 113 ELKLSL 118


>gi|260185444|ref|ZP_05762918.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis CPHL_A]
          Length = 693

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 185/780 (23%), Positives = 302/780 (38%), Gaps = 132/780 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202
           K+   DGTL+ F+  R+E  V  A   +      +   V       +  G++  +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I                 AR                   +A   ++  +Y          
Sbjct: 64  IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320
                 +       +L   A  L   RD        + +L +RY LH   G   E     
Sbjct: 85  ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137

Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             R A  +A  E + E       A  F  LL +  F+ ++PTL NSGT    L+ CF+  
Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A
Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +
Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    L +P                              K+  ++ A  L+  +      
Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
            G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ +
Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+D+L      AVR LD+VID++ +   +  ++    R IGLG+MG    L  L IPY 
Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYD 463

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                 
Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                  RN+   ++APT TI+ I G +  I+P +   + ++ +
Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                 VN       + R  + + +I+++    G +    R+P +++    TA EI P W
Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q+ ++ A S  + L    +   +  IY  AW   +K     R  S      S
Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLS 666



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V       +    D+   + +     L +    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++       +   L
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111


>gi|15607710|ref|NP_215084.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium tuberculosis H37Rv]
 gi|148660339|ref|YP_001281862.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148821771|ref|YP_001286525.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis F11]
 gi|167968357|ref|ZP_02550634.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis H37Ra]
 gi|215402336|ref|ZP_03414517.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|215429402|ref|ZP_03427321.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|215444680|ref|ZP_03431432.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|218752208|ref|ZP_03531004.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|254230912|ref|ZP_04924239.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis C]
 gi|254363528|ref|ZP_04979574.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549524|ref|ZP_05139971.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260199573|ref|ZP_05767064.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|260203727|ref|ZP_05771218.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289441955|ref|ZP_06431699.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|289573162|ref|ZP_06453389.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289744283|ref|ZP_06503661.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|289752609|ref|ZP_06511987.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|289756647|ref|ZP_06516025.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|289760689|ref|ZP_06520067.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|294996080|ref|ZP_06801771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis 210]
 gi|297633060|ref|ZP_06950840.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN 4207]
 gi|297730037|ref|ZP_06959155.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN R506]
 gi|306774674|ref|ZP_07413011.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu001]
 gi|306779425|ref|ZP_07417762.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu002]
 gi|306783211|ref|ZP_07421533.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu003]
 gi|306787581|ref|ZP_07425903.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu004]
 gi|306792131|ref|ZP_07430433.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu005]
 gi|306796318|ref|ZP_07434620.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu006]
 gi|306802177|ref|ZP_07438845.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu008]
 gi|306806386|ref|ZP_07443054.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu007]
 gi|306966585|ref|ZP_07479246.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu009]
 gi|306970778|ref|ZP_07483439.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu010]
 gi|307078502|ref|ZP_07487672.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu011]
 gi|307083064|ref|ZP_07492177.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu012]
 gi|313657365|ref|ZP_07814245.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium tuberculosis KZN V2475]
 gi|81669533|sp|O53767|NRDZ_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase nrdZ
 gi|2909629|emb|CAA17441.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ
           (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|124599971|gb|EAY58981.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis C]
 gi|134149042|gb|EBA41087.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504491|gb|ABQ72300.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148720298|gb|ABR04923.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis F11]
 gi|289414874|gb|EFD12114.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T46]
 gi|289537593|gb|EFD42171.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis K85]
 gi|289684811|gb|EFD52299.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 02_1987]
 gi|289693196|gb|EFD60625.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis EAS054]
 gi|289708195|gb|EFD72211.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium tuberculosis GM 1503]
 gi|289712211|gb|EFD76223.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T85]
 gi|308216780|gb|EFO76179.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu001]
 gi|308327639|gb|EFP16490.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu002]
 gi|308331994|gb|EFP20845.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu003]
 gi|308335781|gb|EFP24632.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu004]
 gi|308339387|gb|EFP28238.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu005]
 gi|308343263|gb|EFP32114.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu006]
 gi|308347155|gb|EFP36006.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu007]
 gi|308351070|gb|EFP39921.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu008]
 gi|308355729|gb|EFP44580.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu009]
 gi|308359684|gb|EFP48535.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu010]
 gi|308363589|gb|EFP52440.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu011]
 gi|308367225|gb|EFP56076.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis SUMu012]
 gi|323721044|gb|EGB30108.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902399|gb|EGE49332.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis W-148]
          Length = 692

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 185/780 (23%), Positives = 302/780 (38%), Gaps = 132/780 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202
           K+   DGTL+ F+  R+E  V  A   +      +   V       +  G++  +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I                 AR                   +A   ++  +Y          
Sbjct: 64  IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320
                 +       +L   A  L   RD        + +L +RY LH   G   E     
Sbjct: 85  ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137

Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             R A  +A  E + E       A  F  LL +  F+ ++PTL NSGT    L+ CF+  
Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A
Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +
Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    L +P                              K+  ++ A  L+  +      
Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
            G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ +
Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+D+L      AVR LD+VID++ +   +  ++    R IGLG+MG    L  L IPY 
Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYD 463

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                 
Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                  RN+   ++APT TI+ I G +  I+P +   + ++ +
Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                 VN       + R  + + +I+++    G +    R+P +++    TA EI P W
Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q+ ++ A S  + L    +   +  IY  AW   +K     R  S      S
Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLS 666



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V       +    D+   + +     L +    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++       +   L
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111


>gi|48843724|ref|YP_025104.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus
           - isolate China]
 gi|44829131|gb|AAS47821.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus
           - isolate China]
          Length = 547

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 170/603 (28%), Positives = 247/603 (40%), Gaps = 95/603 (15%)

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
              +++A   +  +   E    + Y       F+ S+P L NS T      SCF+  V D
Sbjct: 24  ELLLKLAKKYSGGDKTLET---KLYRYSIKGWFVYSSPILSNSKT--GLPISCFIMDVKD 78

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           DL  I     E   L+   GG    W         I     KS G +PF+   +   +A 
Sbjct: 79  DLLHIIDHSVEMRWLSINGGGCAGYWGN-------IRAPCDKSCGPMPFMHTLDADVLAY 131

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QG  RKG+  AYL+  H D+ EF+++R   GD  R+  +++    I D FMK V  +  
Sbjct: 132 KQGSTRKGSYAAYLDISHPDIAEFINMRTPVGDLNRKNLNLHHGVNISDNFMKAVENDLN 191

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W L  P                               V   ISA+ LWR +L   F TG 
Sbjct: 192 WDLKDPCT---------------------------GSVKETISAMELWRSLLETRFRTGE 224

Query: 559 PWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           P++ F D  N +     +     + SSNLC EI L +    TAVC L S+NL  +     
Sbjct: 225 PYLNFIDEANRKLHPALKAKNLKIKSSNLCNEIHLPTDETRTAVCCLASLNLEKY----- 279

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKA----KKSNHTHRAIGLGLMGFQSALHLLH 671
            D  K +  +   V +L+NV+D+              S    R+IGLG  G+   L    
Sbjct: 280 -DDWKDSDVVECCVTMLNNVLDVFIEKAPPQLSKAINSAKLERSIGLGTAGWAYYLMKHQ 338

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           IP+ S  A+         I   A+ AS  L +  G                         
Sbjct: 339 IPFESFNAISCTKIIFGNIKTKALKASKSLCKLYGEP----------------------- 375

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                              + +K  G+RN++ +AIAP +  + I   S SI+P   N YV
Sbjct: 376 -------------------EDLKNYGVRNAHLLAIAPNSNTSCILNTSPSIEPISGNAYV 416

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               +G   +VN +L   L  R   D      +   DGS+ ++  + D  K +  TA+EI
Sbjct: 417 HKTRAGTHLIVNPYLKRVLIDRGKNDSETWDSIVNKDGSVQHLPFLTDREKLVFKTAYEI 476

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATS 910
           D   LIE A+ RQK+I Q QSLNL+    + +K L  ++  AW +G K  YYLR+ ++ S
Sbjct: 477 DQNVLIEQAALRQKYICQGQSLNLFFPPHTQRKILHKVHFDAWKLGCKGLYYLRTAASKS 536

Query: 911 VEK 913
            E 
Sbjct: 537 SEN 539


>gi|108798058|ref|YP_638255.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. MCS]
 gi|119867154|ref|YP_937106.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. KMS]
 gi|126433719|ref|YP_001069410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. JLS]
 gi|108768477|gb|ABG07199.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. MCS]
 gi|119693243|gb|ABL90316.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. KMS]
 gi|126233519|gb|ABN96919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mycobacterium sp. JLS]
          Length = 693

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 179/773 (23%), Positives = 293/773 (37%), Gaps = 126/773 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           ++   DGTL+ F++ R+E  V  A                                    
Sbjct: 9   RVRRRDGTLVPFDAGRIEAAVLRA------------------------------------ 32

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +R +   +P+     AR + + L           P  A    +Q            + V 
Sbjct: 33  AREVACDDPDMPGAVARTVADTL----------GPGTADVETIQDFVEARLGEAGLDDVA 82

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323
              +       DL   A  L   RD        + +L +RY L    G  +E       R
Sbjct: 83  RAYIVYRRDRADL-RAAKALLGVRDELKLSLAAVTVLRERYLLRDQRGRPVESTGEMMDR 141

Query: 324 VAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            A  +A  E   E          F   L    F+ ++PTL N+GT    LS CF+  V D
Sbjct: 142 AARCVAAAEDAYEPGSSAEWTDRFSRGLRDLEFLPNSPTLMNAGTDLGLLSGCFVLPVED 201

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  IF  L + A + +  GG G  ++ +R  G  I  T G + G +PF+ + +  A  V
Sbjct: 202 SLRSIFATLAKAAEIQRAGGGTGFSFSRIRPDGDPITTTTGSACGPVPFVGLFDAAAQVV 261

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           + GG+R+GA  A L+  H D+ +F+  +  +     +    N +  + D FM+ V     
Sbjct: 262 SLGGRRRGACMAVLDVSHPDIYDFIASKSGST---AKLPHFNLSIGVGDAFMRAVESGGM 318

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
             L +P                              K   ++ A  L+  +       G 
Sbjct: 319 HRLVNPRT---------------------------GKTAARVRADELFAAICEAANHGGD 351

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P + F D  N  +P    G + ++N C E+ L         CNLGS+NL      ++ D+
Sbjct: 352 PGLVFLDTINRANPVPQRGRIEATNPCGEVPLLPY----ESCNLGSVNLTRMLTGDEVDW 407

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
            +L +    AVR  D+VID++ +   +  ++    R IGLG+MG    L  L IPY S E
Sbjct: 408 TRLTAVTEMAVRFFDDVIDVSRYPFAELGEATRATRKIGLGVMGLAEMLARLGIPYDSEE 467

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A+ + D  M  I   A  AS  LA++RG++ +F  S                        
Sbjct: 468 ALRLTDRVMRHIQRAAHRASRRLAEDRGSFPAFPDSR----------------------- 504

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
                         V++   RN+   ++APT TI+ I G +  I+P +   Y ++ +   
Sbjct: 505 -------------LVRSGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAYTRAILGRH 551

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              VN       + R  + + +I+++    G +     +P +++    TA EI P W + 
Sbjct: 552 LLEVNPTFDRLARDRGFYRDELITEIAERGG-VRRCPSLPAEVRSAFPTATEISPDWHLR 610

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             +  Q+ +D A S  + L    +   +  IY +AW   +K     R  S   
Sbjct: 611 MQAVVQRHVDAAVSKTVNLPSTATPADVRDIYLKAWKAKVKGVTVYRYGSRED 663



 Score = 98.0 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD  +I  A+++A   V       +    D+   +       L      
Sbjct: 9   RVRRRDGTLVPFDAGRIEAAVLRAAREV-------ACDDPDMPGAVARTVADTL-----G 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                +E IQD VE  L ++G   + R Y++YR +R+D+RAA++       +   L
Sbjct: 57  PGTADVETIQDFVEARLGEAGLDDVARAYIVYRRDRADLRAAKALLGVRDELKLSL 112


>gi|215410107|ref|ZP_03418915.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298524058|ref|ZP_07011467.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493852|gb|EFI29146.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis
           94_M4241A]
          Length = 692

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 184/780 (23%), Positives = 302/780 (38%), Gaps = 132/780 (16%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202
           K+   DGTL+ F+  R+E  V  A   +      +   V       +  G++  +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I                 AR                   +A   ++  +Y          
Sbjct: 64  IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320
                 +       +L   A  L   RD        + +L +RY LH   G   E     
Sbjct: 85  ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137

Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             R A  +A  E + E       A  F  LL +  F+ ++PTL NSGT    L+ CF+  
Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A
Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +
Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    L +P                              K+  ++ A  L+  +      
Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
            G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ +
Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+D+L      AVR LD+VID++ +   +  ++    R +GLG+MG    L  L IPY 
Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKVGLGVMGLAELLAALGIPYD 463

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                 
Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                  RN+   ++APT TI+ I G +  I+P +   + ++ +
Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                 VN       + R  + + +I+++    G +    R+P +++    TA EI P W
Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q+ ++ A S  + L    +   +  IY  AW   +K     R  S      S
Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLS 666



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V       +    D+   + +     L +    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++       +   L
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111


>gi|303245840|ref|ZP_07332122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio fructosovorans JJ]
 gi|302492623|gb|EFL52491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio fructosovorans JJ]
          Length = 743

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 170/635 (26%), Positives = 286/635 (45%), Gaps = 83/635 (13%)

Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHFM 352
           L  RY     +G   E  ++ F RVA  +A  E          E  A  FY+L++   F+
Sbjct: 23  LAKRYLQKGPDGEPTEDARSLFWRVATAIAAMEAHYDKSPFTPEALARAFYDLMTGMRFL 82

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   +
Sbjct: 83  PNSPTLMNAGAPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKKS 142

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++   + 
Sbjct: 143 RVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFITCKERENE- 201

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                + N +  + + FM+ V +   + L  P +                          
Sbjct: 202 ---LQNFNISVALTERFMQAVEKGEDYDLVDPRD-------------------------- 232

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V    +A  ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L  
Sbjct: 233 -KRVVGSQNAAEVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLLP 291

Query: 593 SSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                  CNLGSINL   F     +  D+  L  T+  AVR LDNVID + + +++  + 
Sbjct: 292 Y----EACNLGSINLSVFFDPEAEDGIDWKGLTETVHLAVRFLDNVIDASRYPLDQITEM 347

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              +R IGLG+MGF   L+LL IPY S EA+ +A++ ME I   A SAS  LA ERG + 
Sbjct: 348 VRANRKIGLGIMGFADLLYLLRIPYDSTEALSLAEKVMETIQGEARSASKTLAAERGPFP 407

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           ++  S++                  +  +                    RN+    IAPT
Sbjct: 408 AYAESVF-----------------GKRNLGPY-----------------RNATTTTIAPT 433

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            T++ I G S  I+P +   + +  M G+     N   V  +++   + E+++ ++    
Sbjct: 434 GTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANPHFVAAMQEAGAYSESLMEEVTR-K 492

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
           GSI +I  +P++L+ +  TA +I+P+W ++  +  QK+ D A S  + L    + + +  
Sbjct: 493 GSIAHIGMLPEELRDVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNKATKEDIRE 552

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           IY  A+ +G K     R          T +G   +
Sbjct: 553 IYWLAYELGCKGVTVYRDGCKAGQVLCTGEGGQAE 587


>gi|291336892|gb|ADD96421.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 431

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 201/418 (48%), Positives = 283/418 (67%), Gaps = 6/418 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   +G L   N  ++ +  E AC  L++VS   ++ + +   YD ++  +++ ALI 
Sbjct: 5   ILVKKRNGRLQELNIDKINLCAERACEDLENVSWSEIVLDAHVQFYDKITTKEIDKALIM 64

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           S+R  IEKEPNY+   +R LL  + +EV      K      H++       F + I+  V
Sbjct: 65  SARQKIEKEPNYSYAASRLLLATIHKEVFGESRDKDVFEEQHKLS------FIKNIKSLV 118

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
           K  +L E ++ FDL  L+  L  +RD  F+YLGLQI+YDRY  H+N  R+E PQ+F+MRV
Sbjct: 119 KEEILDERLLSFDLKMLSEALVTDRDLKFKYLGLQIIYDRYLHHVNERRLETPQSFWMRV 178

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           AMGLAL E +K ++A+EFYN LS+F   CSTPTLFNSG+ H QLSSC+L T  D + GIF
Sbjct: 179 AMGLALNEKDKNEKAIEFYNALSTFSLCCSTPTLFNSGSNHSQLSSCYLNTFDDSIDGIF 238

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             L + A  +KY+GGLG D T  R   +++ GTNGKS G+IP+LK+ NDT +AV+QGGKR
Sbjct: 239 EGLWQEARKSKYAGGLGFDCTNFRASNSYVKGTNGKSSGLIPWLKIYNDTLIAVDQGGKR 298

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            GA C+YLE WH+D+E+FL+L+KNTGD+RRR HDMNTANWIPDLF+++V +N  W LFSP
Sbjct: 299 PGAGCSYLEPWHLDIEDFLELKKNTGDERRRCHDMNTANWIPDLFIRKVQKNEDWYLFSP 358

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            +  +LH+ YG EF+  Y+ Y + AD G+++ ++ + A  LW+KML +LFETGHPW+T
Sbjct: 359 SDTRELHETYGNEFDKIYKKYCKLADSGDLENYKIVKAKDLWKKMLRVLFETGHPWMT 416


>gi|258404144|ref|YP_003196886.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfohalobium
           retbaense DSM 5692]
 gi|257796371|gb|ACV67308.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfohalobium retbaense DSM 5692]
          Length = 742

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 171/660 (25%), Positives = 289/660 (43%), Gaps = 82/660 (12%)

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341
           D +       +L  RY      G  +E PQ  F RVA  +A  ET  E+        A  
Sbjct: 9   DLSLSENAELVLRKRYVRKGPEGEEMETPQELFWRVAAAIAASETAYEQTPFSQEALARR 68

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++S  F  ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G
Sbjct: 69  FYDLMASCRFFPNSPTLMNAGTELGQLAACFVLPVGDSMEEIFDAIKYAALIHKSGGGTG 128

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G I FL++ N     V QGG R+GA    L   H D+ E
Sbjct: 129 FSFSRLRAADSRVGSTGGVASGPISFLRIFNTATEQVKQGGTRRGANMGILRVDHPDILE 188

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+ +++  G+      + N +  + + FM+RV  +A + L +P                 
Sbjct: 189 FIRVKEREGELN----NFNLSVALTEDFMRRVEADAEYPLIAPQS--------------- 229

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        K   ++ A  ++  ++   +E+G P I F D  N  +P   +G + +
Sbjct: 230 ------------EKEVGRLRAREVFTLLVQKAWESGDPGIIFLDRINRDNPTPQLGDIEA 277

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDIN 639
           +N C E  L         CNLGSINL           D++ L  ++  AVR LDNVID +
Sbjct: 278 TNPCGEQPLLPY----EACNLGSINLSRFADAPAQELDWEGLRESVHLAVRFLDNVIDAS 333

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            + + +       +R IGLG+MG+   L+ L I Y S +A+ + ++ M+FI   A SAS 
Sbjct: 334 VYPLPQITDQVKRNRKIGLGIMGWADLLYQLRIAYDSRQALSLGEKVMDFIQKEARSASK 393

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA+ERG + ++  S++ +                                        R
Sbjct: 394 DLARERGPFPAYADSVFGKQNLGP----------------------------------YR 419

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDE 818
           N+    IAPT T++ + G S  I+P +   +V+  M G+     N      +++     +
Sbjct: 420 NATTTTIAPTGTLSILAGCSSGIEPLFALSFVREVMDGERLVETNPIFRQAMEEAGCASQ 479

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            ++ ++    G++ ++E +PDD++ +  TA +ID    +   +  QK+ D A S  + L 
Sbjct: 480 RLLDEVAR-KGTVRDMELVPDDMRNVFVTAMDIDGEAHLRMQAAFQKYTDNAVSKTVNLP 538

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            E + + +  IY  A+  G K     R    +    ST +    +        P      
Sbjct: 539 HEATQEDIRHIYWLAYEQGCKGVTVYRDGCKSVQVLSTEESRSQRQAEEEGKAPVRQRPD 598


>gi|225164910|ref|ZP_03727127.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800487|gb|EEG18866.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 382

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 187/382 (48%), Positives = 253/382 (66%), Gaps = 12/382 (3%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           CTEITLN+S +ETAVCNLGSI L  H   +   D+ KL  TIRTAVR LDNVIDIN +  
Sbjct: 1   CTEITLNTSKDETAVCNLGSIILETHLHPDGSLDHAKLRDTIRTAVRALDNVIDINFYPT 60

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
             A  SN  HR IGLG+MG  +AL+     +ASPEAVE  DE+ME I++HA  AS +LA 
Sbjct: 61  RAAGTSNRRHRPIGLGVMGLANALYQRGHAFASPEAVEFNDEAMEAIAYHAYEASSDLAA 120

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ERG YSS++GS W +G+ P D++ LL + R   + + R  +L W  L+ ++   GMRNSN
Sbjct: 121 ERGTYSSYEGSKWHRGILPQDTLDLLEQERGIPVDVPRGGKLDWAPLRAKIAAQGMRNSN 180

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +AIAPTATI+NI   S  I+P+Y+NL+VKSN+SG+F ++N +LV +LK R+LW + M+ 
Sbjct: 181 VLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEFVILNPWLVRDLKARNLWTQDMLD 240

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882
           +LKY DG + +IE IP DL++ + TAF ID  W+I +A+RRQKWIDQ+QS+NL+L  P  
Sbjct: 241 NLKYFDGELSDIESIPADLREKYRTAFGIDHQWVIAAAARRQKWIDQSQSVNLWLATPDL 300

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH-----S 937
           K L  +YR AW  GLKTTYYLR+  A+++EK+T+            T P +S+      +
Sbjct: 301 KTLSHMYRHAWHAGLKTTYYLRTLGASNIEKATVAVKKEVRGIASGTTPAASSPGVRAYT 360

Query: 938 LGIPSSCTSD-----TECEVCQ 954
                +C+ +      ECE CQ
Sbjct: 361 AEEKLACSIEAMRNGGECEACQ 382


>gi|220929802|ref|YP_002506711.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           cellulolyticum H10]
 gi|220000130|gb|ACL76731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulolyticum H10]
          Length = 795

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 172/674 (25%), Positives = 294/674 (43%), Gaps = 95/674 (14%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFY 343
                  +++L  RY     NG+ +E  +  F RVA  +         E        EFY
Sbjct: 1   MKLSENAVKVLEKRYLEKDENGNLLEDCEGMFRRVAKAIASADAAYTDEKGLAVIEHEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           N++++  F+ ++PTL N+G    QLS+CF+  V D + GIF +++  A++ K  GG G  
Sbjct: 61  NMMANLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ ++ T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRAKGSAVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             + +  +      + N +  I + FM+ V  N  + L  P                   
Sbjct: 181 SCKSDNSE----ITNFNLSVGITEDFMRAVEHNLEYELLDPRT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      K   K++A  ++  ++ M +E G P I F D  N  +    +G + S+N
Sbjct: 220 ----------KKPVAKLNAREVFDIIVEMAWENGEPGIIFLDRLNRDNVTPKLGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCH 641
            C E  L         CNLGSINL     +     D++KL  T+R AVR LDNVI++N +
Sbjct: 270 PCGEQPLLPY----EACNLGSINLYNMMDDAHKGLDFEKLEYTVRKAVRFLDNVIEVNKY 325

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +  +     R IGLG+MG+   L  L + Y S  A+++AD+ M FI+  A  AS  L
Sbjct: 326 PLPEIDRMTRGTRKIGLGVMGWADTLCALGVAYNSQAAIDLADKVMSFINDTAQKASQNL 385

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ +G +  ++ S++ Q                                K +K   MRN+
Sbjct: 386 AELKGVFPFYEDSIYAQ--------------------------------KGIK---MRNA 410

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAM 820
               IAPT T++ I GVS  I+P +   Y+++ M + +   VN          + + + +
Sbjct: 411 TTTTIAPTGTLSLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKEAALSGNFYSDEL 470

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +  +    G++ N+  +P ++++I  TA ++ P W ++  +  Q+  D A S  + L  +
Sbjct: 471 MKKIARV-GTVKNMNEVPTNVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNLSHD 529

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +   +  ++  A+    K     R  S      +  K    + NA        + +   
Sbjct: 530 ATTDDVREVFTLAYKTQCKGVTIYRDGSRDLQVLNIGKVKGKEENADKSLPAGENIY--- 586

Query: 940 IPSSCTSDTECEVC 953
                     C+ C
Sbjct: 587 ----------CDSC 590


>gi|154149571|ref|YP_001403189.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Methanoregula boonei 6A8]
 gi|153998123|gb|ABS54546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoregula boonei 6A8]
          Length = 741

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 167/652 (25%), Positives = 261/652 (40%), Gaps = 97/652 (14%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  LA  E E+      FY  + S  F+ ++PTL N+GT   QLS+CF   VPD + G
Sbjct: 29  RVASALADDENER----ARFYEAMISLRFLPNSPTLMNAGTEIGQLSACFTLPVPDTIDG 84

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF A++E A++ K  GG G +++ +R  G+ +  T+G + G I F++V N     + QGG
Sbjct: 85  IFDAMKEGAIIHKTGGGTGYNFSHIRPEGSPVQSTDGVASGPISFMRVFNAATDVIKQGG 144

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+GA    L  WH D+  F+  +K  G+      + N +  + D FM  V   +     
Sbjct: 145 RRRGANMGILNVWHPDILAFISAKKKEGE----FSNFNISVMVNDKFMDLVAAKS----- 195

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                          FE             +     KI+   +W  ++  +++ G P I 
Sbjct: 196 ---------------FET--------VWLTKGGTGEKITVGQIWNGIVEGIWKNGEPGIL 232

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           F D  N  +P   +G + ++N C E  L         C LGSINL A      FD D L 
Sbjct: 233 FYDEINRHNPTPQLGEIDTTNPCGEQPLLPY----ESCVLGSINLAACVREGAFDEDLLR 288

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T R A R LD VI+ N   I +  ++    R IGLG+MG   A+ +L + Y S +    
Sbjct: 289 DTSRMATRFLDLVIEKNVFPIPQIAEATRKTRKIGLGVMGVHDAMLMLGLSYDSEKGRAW 348

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            +  M+ I+  AI  S  LA++ G + +++GS+W                          
Sbjct: 349 CEWVMKVITETAIEESHRLAEKLGTFPAWQGSIW-------------------------- 382

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801
                      K   +RN+    +APT TI+ + G S  I+P +   Y + N  G  F +
Sbjct: 383 -----------KDYEVRNAAMTTVAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKVFVI 431

Query: 802 VNSFLVNELKQ----RDLWDEAMISD------LKYHDGSIGNIERIPDDLKKIHATAFEI 851
           VN      L           +             +  GS+ ++  +  + + +  TA +I
Sbjct: 432 VNPVFKEALLHTLTGMGYAGDEREKKAGEVISHVHETGSMQDVAWLSAEFRGLFKTALDI 491

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                I   +  QK++  + S  + +    +          AW +GLK     R+ S   
Sbjct: 492 PWREHILMQACFQKYVHASISKTINMPGSATKDDCAEALLMAWKLGLKGITIYRTGSRED 551

Query: 911 ---VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV-----CQ 954
                K   K          V      T    IPS      +        CQ
Sbjct: 552 VVLALKEKEKAPASAPAPATVAASPMRTVPEKIPSLSIDRPKELAGRTYLCQ 603


>gi|332702239|ref|ZP_08422327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552388|gb|EGJ49432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 744

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 175/637 (27%), Positives = 301/637 (47%), Gaps = 85/637 (13%)

Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFM 352
           L  RY     +G+ +E  Q  F RVA  +A +E +        ++ A EFY+L++SF F+
Sbjct: 23  LRKRYLRKGPDGNPVEDVQGMFWRVASAIASEEVKYAKSSFDVDRLAREFYSLMTSFRFL 82

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QL++CF+  V D +  IF ++++ A++ K  GG G  ++ +R  GA
Sbjct: 83  PNSPTLMNAGTELGQLAACFVLPVGDSMEDIFASVRDAALIHKSGGGTGFSFSRLRREGA 142

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+K+ N     V QGG R+GA    L   H D+ +F+  ++  G+ 
Sbjct: 143 RVGSTGGVASGPVSFMKIFNTATEQVKQGGTRRGANMGILRVDHPDILKFISCKEREGEL 202

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                + N +  + + FM+ V  +  ++L +P    +                       
Sbjct: 203 N----NFNISVALTEKFMQAVEADEEYSLIAPQNGQEDG--------------------- 237

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                 ++ A  ++  ++   +E+G P I F D  N  +P    G + S+N C E  L  
Sbjct: 238 ------RLRAREVFALLVRKAWESGDPGIVFLDRINRDNPTPKQGEIESTNPCGEQPLLP 291

Query: 593 SSEETAVCNLGSINLLAHFANNQFD---YDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                  CNLGSINL   +  N  D   +D+       AVR LDNVID + + ++K  ++
Sbjct: 292 Y----EACNLGSINLATIYDPNSDDGIDWDEFKRITHLAVRFLDNVIDASRYPLDKITET 347

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              +R IGLGLMG+   L  L +PY S EA+ + ++ M+F+   + +AS  LA+ERGA++
Sbjct: 348 VGRNRKIGLGLMGWADLLFQLRVPYNSQEALILGEKVMKFLQAESKAASKILAEERGAFA 407

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAP 768
           ++  S +                                     K +G  RN+    IAP
Sbjct: 408 AYDESTYAD-----------------------------------KKVGPYRNATTTTIAP 432

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T T++ I G S  I+P +   + ++ M G+     N +    L++ + + +A++ D+   
Sbjct: 433 TGTLSIIAGCSSGIEPLFALSFTRNVMDGEKLVEANPYFEQALRETESYSKALMEDVAK- 491

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            GSI ++E +PDD++++  TA +++P + ++  +  QK+ D A S  + L    S + + 
Sbjct: 492 KGSIAHMELLPDDIRRVFVTAHDVEPTYHLKMQAAFQKFTDNAVSKTVNLPSSASEEDIR 551

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            IY  A+ MG K     R     S    T +    K 
Sbjct: 552 EIYWMAYEMGCKGVTVYRDGCKASQVLCTGEAEAKKA 588


>gi|323700021|ref|ZP_08111933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. ND132]
 gi|323459953|gb|EGB15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio desulfuricans ND132]
          Length = 749

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 176/664 (26%), Positives = 301/664 (45%), Gaps = 86/664 (12%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------- 341
           D         +L  RY      G   E  +  F RVA  +A +E + E+  V+       
Sbjct: 12  DPIINENAKIVLQRRYQRKDTEGVVYETVKELFWRVASAIAAEEAKYERSTVKPAKLARD 71

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++S+ F+ ++PTL N+GT   QL++CF+  V DD+ GIF A++  AM+ K  GG G
Sbjct: 72  FYDLMTSYRFLPNSPTLMNAGTDLGQLAACFVLPVADDIEGIFDAVKHAAMIHKSGGGTG 131

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G + FLK+ N     + QGG R+GA    L   H D+ E
Sbjct: 132 FAFSRLRAKDSVVGSTGGVASGPLSFLKIFNCATEQIKQGGTRRGANMGILRIDHPDIME 191

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+      + N +  + + FM+ V + A + L +P+                
Sbjct: 192 FIKAKERDGELN----NFNLSVGLTEAFMQAVNEKADYNLIAPNT--------------- 232

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +    ++A  ++  ++   +E+G P I F D  N  +P   +G + S
Sbjct: 233 ------------GEAVGTLNARDVFNILVQKAWESGDPGIVFLDRINRDNPTPALGEIES 280

Query: 582 SNLCTEITLNSSSEETAVCNLGSINL------LAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +N C E  L         CNLGSINL        +  +++ D+D+L   I  +VR LDNV
Sbjct: 281 TNPCGEQPLLPY----EACNLGSINLGLCFAKGRNGKDSEIDWDELKRIIHLSVRFLDNV 336

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID + + +++  +    +R IGLG+MG+   L+ L IPY S  AV++A+  M+F+   + 
Sbjct: 337 IDASVYPLDQITEMVGKNRKIGLGVMGWADLLYQLQIPYNSQTAVDMAERVMKFVQAESR 396

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           SAS +LA ERG + ++  S +                  +  +                 
Sbjct: 397 SASKQLATERGQFPAYPESTF-----------------GKANLGPY-------------- 425

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
              RN+    IAPT T++ I G S  ++P +   +V++ M  D     N +    L   D
Sbjct: 426 ---RNATTTTIAPTGTLSIIAGCSSGVEPLFALSFVRNVMDNDKLVETNPYFEAALNSAD 482

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            +   ++ ++    GSI  ++ +P+ L+ ++ T+ +I+P+W ++  +  QK+ D A S  
Sbjct: 483 AYSGKLMEEIAKV-GSIKKMDHLPEHLRHVYVTSMDIEPIWHLKMQAAFQKYTDNAVSKT 541

Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + L    + + +  IY +A+  G K     R  S TS    T  G   K  A        
Sbjct: 542 VNLPNSATKEDIWDIYWKAYEYGCKGVTVYRDGSKTSQVLCTGDGDKKKEAAKQGKSIVK 601

Query: 934 STHS 937
               
Sbjct: 602 DRPD 605


>gi|254173913|ref|ZP_04880584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
            putative [Thermococcus sp. AM4]
 gi|214032162|gb|EEB72993.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
            putative [Thermococcus sp. AM4]
          Length = 1361

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 137/559 (24%), Positives = 250/559 (44%), Gaps = 56/559 (10%)

Query: 394  AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
              +    G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE
Sbjct: 750  MVFVHNTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILE 809

Query: 454  TWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
             WH D+E+F+  + +NTG +     +++   W  + F + + +   + L +P        
Sbjct: 810  VWHPDIEKFIHAKERNTGTNVLSNFNISVGIW--EDFWEALKEGKRYPLVNPRT------ 861

Query: 513  LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                  +  ++I   +L+ ++  M +    P + F D  N R+ 
Sbjct: 862  ---------------------GEKVKEIDPKSLFEELAFMAWSKADPGVIFFDVINRRNV 900

Query: 573  QQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625
                  G + ++N C E  L     E   CNL SINL             FD+D+ A  I
Sbjct: 901  LAEAKGGPIRATNPCGEEPLY----EYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVI 956

Query: 626  RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            +   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E      +
Sbjct: 957  QKVAKYLDNAIDVNRFPLPEIDHNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFAFMRK 1016

Query: 686  SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            + E+++F+A   SVE A++RG +  ++ S +  G  P++                   LP
Sbjct: 1017 ATEYLTFYAYKYSVEAAKKRGTFPLYEKSAYKDGELPVE----------GFYHREIWTLP 1066

Query: 746  WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
            WDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS   G+F  V+  
Sbjct: 1067 WDELVEEIKRHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPV 1126

Query: 806  LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
              +ELK+R LW + ++  +  + GS+  +E IP+D++++  T+ ++  +  I + +  Q 
Sbjct: 1127 FESELKKRGLWSDEILRKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILAQANIQL 1186

Query: 866  WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVD 920
            W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    SVE    K V 
Sbjct: 1187 WLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRKRVP 1246

Query: 921  GKLNAVPVTDPNSSTHSLG 939
             K ++  V    +   +  
Sbjct: 1247 AKPSSYAVEKLKAVVEAEP 1265



 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 134/377 (35%), Gaps = 85/377 (22%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V            D + N   + V R +     
Sbjct: 5   KVMKRDGRIVPFDRERIKWAIKRAMLEVGVH--------DDKLLNRVVRRVVRRINELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             + HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +    +            
Sbjct: 57  GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKKILNKDK--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  L    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SLNALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I  E      + R L E++    L  +         ++ +  + +   R           
Sbjct: 129 IRNEKGEIVESPRELFERVA--TLAVIPDLLYDERVYDKEGKHEQDLSRVKHYLEHFEEF 186

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325
                                     +G   L   +F  +     E+ +   M+V+    
Sbjct: 187 DGKY---------------------SIGRFKLNKYHFERLVKLYRELAEKGKMKVSIDEF 225

Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
             M       + E    E++ L++S  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LGMLENGAFDDYESEIEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGL 400
             A  + AM+ K  GG 
Sbjct: 286 MKAAHDVAMIQKSGGGC 302


>gi|240169273|ref|ZP_04747932.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium kansasii ATCC 12478]
          Length = 696

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 164/661 (24%), Positives = 267/661 (40%), Gaps = 80/661 (12%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHI-NGSRIEMPQA 319
           + V    +       +L      L   RD        + +L +RY L    G   E    
Sbjct: 82  DDVARAYIIYRQRRAEL-RAGKALLGVRDELKLSLAAVMVLRERYLLRDARGRPTESTGE 140

Query: 320 FFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
              R A  +A  E E       + A  F  LL +  F+ ++PTL N+GT    L+ CF+ 
Sbjct: 141 MMDRTARCVAAAEDEYRTGSSAQWAERFATLLRNLEFLPNSPTLMNAGTDLGLLAGCFVL 200

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D L  IF  L + A + +  GG G  ++ VR  G  +  T G + G + FL++ +  
Sbjct: 201 PVEDSLRSIFATLGQAAEVQRAGGGTGYTFSRVRPAGDRVASTGGTASGPMSFLRLYDTA 260

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
           A  V+ GG+R+GA  A L+  H D+ +F+   K          +++    + D F++ V 
Sbjct: 261 ADVVSMGGRRRGACMAVLDASHPDICDFIS-AKAESTSHLTHFNLSVG--VGDAFLRAVE 317

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +     L +P                              K   ++ A  L+  +     
Sbjct: 318 RGGAHRLVNPRT---------------------------GKTVARMPAAELFDAICQAAH 350

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
             G P + F D  N  +P    G + ++N C E+ L         CNLGSINL     N 
Sbjct: 351 ACGDPGLVFLDTINRANPVPARGRIEATNPCGEVPLLPY----ESCNLGSINLARMITNG 406

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             D+D+L +    AVR LD+VID++ +   +  ++    R IGLG+MG    L  L IPY
Sbjct: 407 HLDWDRLGAVTEVAVRFLDDVIDVSRYPFPELAEATRASRKIGLGIMGLAELLASLGIPY 466

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S E V +A + M  I  HA  AS  LA++RG++ +F  S                    
Sbjct: 467 DSVEGVRLAGQVMRRIQRHAHLASRRLAEDRGSFPAFADSR------------------- 507

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                             V+    RN+   ++APT TI+ I G +  I+P +   + ++ 
Sbjct: 508 -----------------LVRFGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAI 550

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +      VN       + +  + + +++++    G +    R+P +L+    TA EI P 
Sbjct: 551 VGRQLLEVNPCFDRLARDQGFYRDELVAEIAQRGG-VRGYPRLPAELRAAFPTAAEIAPQ 609

Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           W +   +  Q+ +D A S  + L    +   +  +Y  AW   +K     R  S      
Sbjct: 610 WHLRMQAAVQRHVDAAVSKTVNLPAAATVDDVRAVYLSAWRAKVKGITVYRYGSREGQVL 669

Query: 914 S 914
           S
Sbjct: 670 S 670



 Score = 72.2 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV +R+  +  FD       I +   AV       +    D+   +       L      
Sbjct: 12  QVRRRDATLVPFD-------IARIEAAVARAAREVAYDDPDMPATVARAVADTLGPR--- 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             I  +E + D VE  L ++G   + R Y++YR+ R+++RA ++       +   L
Sbjct: 62  --IASVERVGDFVEARLGEAGLDDVARAYIIYRQRRAELRAGKALLGVRDELKLSL 115


>gi|311992968|ref|YP_004009835.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage
           Acj61]
 gi|295815257|gb|ADG36183.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage
           Acj61]
          Length = 750

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 183/787 (23%), Positives = 313/787 (39%), Gaps = 81/787 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLETA 201
           +K++   G    F+  ++  ++  A  G++   D+    +      ++ D ++ S+++ A
Sbjct: 1   MKVIKSSGIAQEFDQNKIMQVLNWALEGIEFTSDIDVYDLFDRIIPHLKDEMTTSEIQDA 60

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           ++  +   I  +E +Y  V +      LR+ V                   + ++     
Sbjct: 61  IVKVAADSITLEEQDYQYVASNLAQFGLRKAVFGQFDPPK-----------FIDHVTSVT 109

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQ 318
             G+    +       +   L   + + RDF F Y G   L D+Y +     G   E PQ
Sbjct: 110 AHGLYDSEILLKYSPAEFEELEEAIDHSRDFTFTYAGTCQLMDKYLVKDRSTGKIYETPQ 169

Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             FM + M L   E +  + +   EFY  +S+      TP +    T   Q SSC +   
Sbjct: 170 FAFMLIGMCLHQDEDKSTRLQAVKEFYEAVSTRKISLPTPIMAGVRTPTRQFSSCVVIES 229

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I  A            G+G +   +R  G+ I     K  GV+PF K  N    
Sbjct: 230 GDSLDSINDANSAIVKYVSKRAGIGINAGMIRAEGSKIGPGEVKHTGVVPFWKHFNSAVH 289

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +QGG RKG+   +   WH++VE  + L+ N G +  R   M+    I +L ++R   N
Sbjct: 290 CCSQGGIRKGSATMFFPMWHLEVENLIVLKNNKGVEENRIRHMDYGLQINELLIERYINN 349

Query: 497 AGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML-TM 552
              TLFSPD   E+ D +    + F   YE+ E+Q    +    +++ A  LW +M  T 
Sbjct: 350 DYITLFSPDAHPELYDSYFSNPERFREIYEDLEKQPLVRK----KRMKARTLWEEMFATE 405

Query: 553 LFETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSS--EETAVCNLGSINLLA 609
              T   + +F D  N      + +  V  SNLC EI L++     E     L +++   
Sbjct: 406 RANTARIYPSFVDNINEYGPWIREIAPVRQSNLCMEIALHTKDIGREDGEIALCTLSAFV 465

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             + +  + D++       VR LDN++D   +  EKA  S   +R++G+G+  + + L  
Sbjct: 466 LDSFDWKNQDEINRIAMVMVRSLDNLLDYQDYPHEKAL-SAKEYRSLGVGVTNYAAWLAS 524

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y   +A EI  E  E + +  I AS++LA+E+G       + + QG  PID     
Sbjct: 525 NSASY--NDANEITHELFERLQYALIKASIQLAKEKGPSPRLYMTKYGQGKLPIDWYRPS 582

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +      +     L W+ L++ +   GMRN+   A+ P  + + +   +  ++P    +
Sbjct: 583 VDE----LVEPVYVLDWEALREDLILYGMRNTTLSAMMPCESSSQVSNSTNGLEPPRGPV 638

Query: 790 YVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            VKS+  G F  V   +  N+L                                  +  A
Sbjct: 639 SVKSSKGGAFNQVVPNYAENQL---------------------------------FYDFA 665

Query: 849 FEID---PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLK 898
           +E+        +   S  QKW DQA SLN Y         +    ++      A   G K
Sbjct: 666 WELAKTGNKGYLTQCSIIQKWNDQAISLNTYYLPSRYENGKVPMSEIIDDILFANFYGNK 725

Query: 899 TTYYLRS 905
             YY  +
Sbjct: 726 NMYYHNT 732


>gi|121534255|ref|ZP_01666079.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosinus carboxydivorans Nor1]
 gi|121307025|gb|EAX47943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosinus carboxydivorans Nor1]
          Length = 566

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 175/626 (27%), Positives = 276/626 (44%), Gaps = 85/626 (13%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLSS 348
                + +L  RY         E P+  F RVA  +A  E     +++    E+Y +++ 
Sbjct: 2   LSGEAMAVLKARYLREG-----ETPEKMFWRVAEYVAEAEALYGGDRQAACQEYYAIMAG 56

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
             F+ ++P L N+G +  Q+++CF+  V D L  IF  L+  A++ +  GG G  ++ +R
Sbjct: 57  LEFLPNSPALMNAGRKQAQMAACFVLPVDDSLGDIFDTLKHAALIHQSGGGTGFSFSRLR 116

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I GTNGK+ G + FL V +     V QG  R+GA  A L   H D+EEF+  ++ 
Sbjct: 117 PKGDRIAGTNGKASGPVSFLHVYDAATEVVRQGAVRRGANMAVLRVDHPDIEEFITAKR- 175

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              DR   ++ N +  I D FM  V Q+  + L  P                        
Sbjct: 176 ---DRTVLNNFNLSVGITDAFMVAVAQDRSFALVHPRT---------------------- 210

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                 +  R++SA  L+  M  M +E G P + F D  N  +P  H+G   + N C+E 
Sbjct: 211 -----GRTVRQVSARRLFDLMAAMAWENGEPGLFFLDTVNRANPTPHLGNFEAPNPCSEQ 265

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            L         C LGS+NL           DYD+L+  +R AVR LDN+ID N + +   
Sbjct: 266 PLLPY----ESCVLGSVNLAKMVAADGQHLDYDRLSVVVRRAVRFLDNIIDRNWYPLPAV 321

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R IGLG+MG      +L IPY S +AV +  + M FI+  A   S  LA ERG
Sbjct: 322 AEATLRTRKIGLGIMGLADLFIMLDIPYGSKQAVLLTADIMRFITAEARRESARLAAERG 381

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            + ++ GS+++  + P                                   +RN+    I
Sbjct: 382 PFPAYPGSIYESSIGP-----------------------------------VRNATVTTI 406

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+ I   S  I+P +   + +  + G     +N  ++  L +R L    +   +K
Sbjct: 407 APTGTISIIANCSSGIEPLFALAFSRHVLGGQVLASINPTVLAYLDKRGLLTTDVEKTIK 466

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
            H GS+ N   +P  +K++ ATA EI P+W +   +  Q++ D A S  + L  +     
Sbjct: 467 -HQGSVRN-TGLPYHVKQVLATAHEIRPIWHVAQLAAAQRYTDNAVSKTVNLPHKAMPHD 524

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910
           +  I+  A+  G K     R  S   
Sbjct: 525 VARIFSLAYRSGCKGVTVYRDGSRDQ 550


>gi|153801926|ref|ZP_01956512.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-3]
 gi|124122571|gb|EAY41314.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae MZO-3]
          Length = 670

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 165/686 (24%), Positives = 268/686 (39%), Gaps = 59/686 (8%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGS 312
           +  + +E+G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G 
Sbjct: 14  HVTKMVEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQ 73

Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
             E  Q  ++ VA  L     +  +      FY+  S+F     TP +    T   Q SS
Sbjct: 74  IYESAQFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSS 133

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C L    D L  I               G+G +   +R LG+ I G      G IPF K 
Sbjct: 134 CVLIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKY 193

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
                   +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  
Sbjct: 194 FQTAVKCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMY 253

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           KR+ +    TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++ 
Sbjct: 254 KRLVEGGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFT 309

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            ++     TG  +I   D CN  SP       V  SNLC EI L +S         G I 
Sbjct: 310 LLMQERASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIA 369

Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           L              D         VR LD ++D   + +  A++S+   R +G+G++ +
Sbjct: 370 LCTLSAFNLGAIESLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 429

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L    + Y+   A  +   + E + +H + AS++LA+E+G    F  + + +G+ PI
Sbjct: 430 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 489

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           D+     +    L         WD+L+  +   G+RNS   A+ P+ T + I   +  I+
Sbjct: 490 DTYKKDID----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 545

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + VK++  G    V        +     +  ++ ++  +DG +            
Sbjct: 546 PPRGYVSVKASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDGYLH----------- 589

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896
                               QK++DQA S N   D       +   KKL      A+  G
Sbjct: 590 ---------------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFG 634

Query: 897 LKTTYY--LRSRSATSVEKSTLKGVD 920
           +KT YY   R  +      +T+K  +
Sbjct: 635 VKTLYYHNTRDGAKDEQTDATVKVQE 660


>gi|225734495|gb|ACO25263.1| ribonucleoside-diphosphate reductase [Epizootic haematopoietic
           necrosis virus]
          Length = 565

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 163/620 (26%), Positives = 247/620 (39%), Gaps = 105/620 (16%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            +  +      F  S+P L  S T      SCFL  VPD + G+     E   L+   GG
Sbjct: 45  EKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +   W         + G + KS G IPFL   +    A  QG  R+G+  AY+   H D+
Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P               
Sbjct: 157 IEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVERGENWDLVDPKS------------- 203

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576
                           V   +SA  LW ++L   F TG P++ F D  N       ++  
Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKG 249

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK-LASTIRTAVRVLDNV 635
             +  SNLC EI L ++++ TAVC L S+NL  +    + D  + L   +   ++   + 
Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERYNEWRETDLVECLVEMLDNVIQTFVDE 309

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
             +      +A +S    R+IGLG MG+   L    IP+ S EAV +       I   A+
Sbjct: 310 APLKTPHTARAVRSAAGERSIGLGAMGWARYLQKRRIPFDSEEAVRLTGIIFGGIKSAAV 369

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            A+  LA+ERG      G                                          
Sbjct: 370 RATRALAKERGEAPDLTG------------------------------------------ 387

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
            G+RN++ +A+AP A  A + G S S++P     YV     G    VN +L  +L+   L
Sbjct: 388 YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGL 447

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
             E +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q QSLNL
Sbjct: 448 DTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNL 507

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           +         L  ++R AW  G K  YYLR+                           + 
Sbjct: 508 FFPMGADKTDLSDVHRLAWKSGCKGLYYLRT-----------------------CAGRTG 544

Query: 935 THSLGIPSSCTSDTECEVCQ 954
                   S  +  EC  CQ
Sbjct: 545 HKIFEAKKSPENTEECTACQ 564


>gi|283852533|ref|ZP_06369801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. FW1012B]
 gi|283572141|gb|EFC20133.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio sp. FW1012B]
          Length = 743

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 173/642 (26%), Positives = 285/642 (44%), Gaps = 83/642 (12%)

Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMG-------LALKETEKEKRAVEFYNLLSSFHFM 352
           L  RY +   +GS +E  +  F RVA                 E  A  FY+L+    F+
Sbjct: 23  LAKRYLMKGPDGSPLEDVRGLFWRVAAAIAAEEAKYGNSPFAPEDLARRFYDLMVGMRFL 82

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R   A
Sbjct: 83  PNSPTLMNAGTPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKKA 142

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++   + 
Sbjct: 143 RVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRVDHPDILEFITCKERENE- 201

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                + N +  + + FM+ V +   + L  P +                          
Sbjct: 202 ---LQNFNISVALTERFMQAVEKGEDYDLIDPRD-------------------------- 232

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
              V  + SA  ++  ++   +E+G P I F D  N  +P   +G + S+N C E  L  
Sbjct: 233 -KAVVGRQSAADVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLLP 291

Query: 593 SSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                  CNLGS+NL         +  D+  L  T+  AVR LDNVID + + +++    
Sbjct: 292 Y----EACNLGSVNLAVFHDPAAPDGIDWAGLTETVHLAVRFLDNVIDASRYPLDQITDM 347

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              +R IGLGLMGF   L+LLHIPY S EA+++A+  M+ I   + SAS  LA ERG + 
Sbjct: 348 VQANRKIGLGLMGFADLLYLLHIPYDSTEALKLAERIMDTIQGESKSASKALAAERGPFP 407

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           ++  S++                  +  +                    RN+    IAPT
Sbjct: 408 AYPDSIF-----------------GKRNLGPY-----------------RNATTTTIAPT 433

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            T++ I G S  I+P +   + +  M G+     N   VN +K+   + ++++ ++    
Sbjct: 434 GTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANVHFVNAMKEAGAYSDSLMEEVTR-K 492

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
           GSI +I  +PD L+++  TA +I+P+W ++  +  QK+ D A S  + L ++ +   +  
Sbjct: 493 GSIAHIGMLPDALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNDATQDDIRE 552

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           IYR A+ +G K     R          T  G           
Sbjct: 553 IYRLAYELGCKGVTVYRDGCKAGQVLCTGDGATPAPAKTQSK 594


>gi|222834322|gb|EEE72799.1| predicted protein [Populus trichocarpa]
          Length = 403

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 273/403 (67%), Positives = 332/403 (82%), Gaps = 1/403 (0%)

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGG
Sbjct: 1   IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 60

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +   WTLF
Sbjct: 61  KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 120

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           SP +V DLHDL+G  FE AY+ YE +AD GE+K+F++I A+ LWRKML+MLFETGHPW+T
Sbjct: 121 SPSDVGDLHDLFGAAFEQAYKAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 180

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           FKDPCN+RSPQQH GVVHSSNLCTEITLN+S  ETAVCNLGS+NL  H  +   D+ KL 
Sbjct: 181 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 240

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            TI TA+R+LDNVIDIN + ++KAK SN  HR +GLGLMGFQ AL+ + I YAS  AVE 
Sbjct: 241 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 300

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRT 741
           AD+SME I ++A  AS ELA+ERG YSS+KGSLWDQG+ P+D++ LL + R   + ++R+
Sbjct: 301 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGGYVEVDRS 360

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           SRL WD L+ ++   GMRNSNC+AIAPTATI+NI GV  SI+P
Sbjct: 361 SRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 403


>gi|308273142|emb|CBX29745.1| hypothetical protein N47_F14400 [uncultured Desulfobacterium sp.]
          Length = 734

 Score =  358 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 174/648 (26%), Positives = 277/648 (42%), Gaps = 75/648 (11%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYNLL 346
               L +L  RY      G  IE P+  F+RVA  +A  ++        EK   +F  LL
Sbjct: 14  SNNALIVLEKRYLKKDKEGKAIETPEDMFLRVAKHIASADSLFAGPFDIEKTEKKFLKLL 73

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           ++  F+ ++PTL N+G R  QL++CF+  + D +  IF  L+  AM+ K  GG G  ++ 
Sbjct: 74  TNLWFLPNSPTLMNAGRRLGQLAACFVLPLEDSMDSIFETLKHTAMIHKSGGGTGFSFSR 133

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R     +  T G S G I F+ V +     V QGG R+GA    L   H D+E F++L+
Sbjct: 134 IRPEKDIVLSTAGVSSGPISFMTVFDVATETVKQGGTRRGANMGILRVDHPDIESFIELK 193

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
               +D  + ++ N +  + D FM  ++  +                             
Sbjct: 194 ----NDTGKLNNFNISVALTDSFMDALSNESDKDSEYDLINPRTEQ-------------- 235

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    + R++SA  ++  ++   +  G P I F D  N  +P   +G + ++N C 
Sbjct: 236 ---------ITRRVSARKIFDAIVHSAWLNGEPGIIFIDRINRDNPVPELGNIEATNPCG 286

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E  L         C LGSINL A  +    +Y +L  TI  +V  LDNV++IN + + + 
Sbjct: 287 EQPLLPY----ESCTLGSINLSAMVSGKAVNYKRLKKTIHDSVHFLDNVVEINKYPLARI 342

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +K +   R IGLG+MGF   L  L I Y S EAV  A++ M FIS  +  AS  LA++RG
Sbjct: 343 EKMSKGTRKIGLGVMGFADMLIKLGISYDSEEAVTQAEKIMSFISEESKIASAALAKKRG 402

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            ++ +KGS++D    P                                   MRN+    I
Sbjct: 403 NFAFYKGSIYDSPDTPY----------------------------------MRNATTTTI 428

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLK 825
           APT TI+ I G S  I+P +  +  +  + G     +N   +   K    + + ++ ++ 
Sbjct: 429 APTGTISIIAGTSSGIEPIFGIVQTRRVLDGKTLSDINPLFIGIAKSEGFYSKNLLDEI- 487

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
            +  SI  I+ IPD +K +  TA +I P   I   +  Q++ D A S  +    +     
Sbjct: 488 TNGTSIQQIDAIPDQIKDLFKTAHDILPEQHINIQAAFQRFTDNAVSKTVNFGPDALRSD 547

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932
           +  +Y  A   G K     R  S      S        +   P   P 
Sbjct: 548 IAKVYMLAHTKGCKGVTIYRYGSRDHQVLSIGAEKKDSVKIAPRPRPE 595


>gi|56692701|ref|YP_164159.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore
           grouper iridovirus]
 gi|42517413|gb|AAS18079.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore
           grouper iridovirus]
          Length = 572

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 161/625 (25%), Positives = 260/625 (41%), Gaps = 112/625 (17%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           + Y+   +  F  S+P L +         SCFL  VPD ++G+     E   L+   GG+
Sbjct: 48  KLYSYSCAGWFGYSSPVLNSGA--GGLPISCFLMYVPDSIHGLISHTAELRWLSVLGGGV 105

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              W         + G + KS G IPF+   +    A  QG  R+G+  AY+   H D+ 
Sbjct: 106 AGHWDA-------VRGPSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPDII 158

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL +R  TGD  R+  +++    + D FM  V ++  W L  P+               
Sbjct: 159 EFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNT-------------- 204

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG 577
                         K  + + A  LW ++L   F TG P++ F D  N       +    
Sbjct: 205 -------------SKTVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTKGL 251

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +  SNLC EI L +  + TAVC L S+NL        +D  K    +   VR+LDNV++
Sbjct: 252 KIRGSNLCNEIHLPTDKDRTAVCCLSSVNLE------MYDEWKDTDLVECVVRMLDNVME 305

Query: 638 INCH-------TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
                          A       R++G+G MG+   L    IP+    A  + DE    I
Sbjct: 306 DFISRAPTLSAHTANAVAGASGERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIFGAI 365

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+SAS +LA E+G      G                                     
Sbjct: 366 KAAALSASKKLAAEKGEPPDLVG------------------------------------- 388

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                 G+RN++ +A+AP A  A + G S S++P   N YV    +G   + N +L  +L
Sbjct: 389 -----YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLERDL 443

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           ++ ++  + +   +  + GS+ ++   P+ L++++ TAFEID M ++  A+ RQ+ + Q 
Sbjct: 444 RELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHLCQG 503

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+NL+        KL  ++R AW +  K  YYLR+++       T + V  +  +   +
Sbjct: 504 QSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKA-----NRTSRKVFTEFFSSAAS 558

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
             N+ +             EC  CQ
Sbjct: 559 TSNNKS------------EECVACQ 571


>gi|20808702|ref|NP_623873.1| ribonucleotide reductase alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517341|gb|AAM25477.1| Ribonucleotide reductase alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 691

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 169/632 (26%), Positives = 279/632 (44%), Gaps = 81/632 (12%)

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV-- 376
            F RVA  +A  E E+E     FY ++S + F+     L  +GT       +CF+  V  
Sbjct: 1   MFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGRILAGAGTGREVTYFNCFVIPVEA 56

Query: 377 ------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                  D    I   + +   +    GG+G +W+ +R  GA++ G  G S G + ++  
Sbjct: 57  NDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTLRPRGAYVKGVGGTSSGAVSWMLA 116

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           AN+ A  V QGG R+ A+   L  WH D+EEF+ ++K    D  +    N +  + D FM
Sbjct: 117 ANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK----DLTKMQQANLSVAVSDAFM 172

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V Q+  W L  PD     +D      E   +  E +A      V+++I A  LW K++
Sbjct: 173 EAVAQDKMWKLEFPDTSHPNYDA-----EWKGDLNEWKAKGYPTVVYKEIPARELWNKIV 227

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           T  +E+  P + F +  N  S   ++  + S+N C E+ L        VCNLG+INL+A 
Sbjct: 228 TAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGELGLEPY----GVCNLGAINLVAF 283

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             N + ++++L  T++ AVR LDNV+D+  + + + K+     R +GLGLMG   AL L+
Sbjct: 284 VENGKINFEELEETVKIAVRFLDNVLDLGAYVLPQNKEMAQKLRRVGLGLMGLADALILM 343

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           ++ Y S E+++  +E +  I   A  ASVELA+E+G +  F    + +G      I  L 
Sbjct: 344 NLRYGSEESLKATEEIVRRIRDAAYRASVELAKEKGPFPEFVADKYLKGQ----FIQRLP 399

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +                 ++  +   G+RN+  +  APT T + + GVS  I+P++   Y
Sbjct: 400 KD----------------IRDEIAKYGIRNATILTQAPTGTTSILAGVSSGIEPNFAKEY 443

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           V+ + +G  TV +            W                              +A E
Sbjct: 444 VRKDRTGTHTVKH------------WLAD----------------------YPAFVSAHE 469

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           + P   ++  +  QK+ID + S  + L    +   +D IYR A+ +G K     R  S  
Sbjct: 470 VTPEEHVKMQAVLQKYIDSSISKTINLPRTATVDDIDNIYRLAYELGCKGITVYRDGSRE 529

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            V  +  K  +              T  +  P
Sbjct: 530 GVLVTDTKPQEKTKITERPPVLKGITKRIETP 561


>gi|56418246|gb|AAV91060.1| ribonucleoside-diphosphate reductase alpha subunit [Grouper
           iridovirus]
          Length = 572

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 161/625 (25%), Positives = 261/625 (41%), Gaps = 112/625 (17%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           + Y+   +  F  S+P L +         SCFL  VPD ++G+     E   L+   GG+
Sbjct: 48  KLYSYSCAGWFGYSSPVLNSGA--GGLPISCFLMYVPDSIHGLISHTAELRWLSVLGGGV 105

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              W         + G + KS G IPF+   +    A  QG  R+G+  AY+   H D+ 
Sbjct: 106 AGHWDA-------VRGPSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPDIV 158

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL +R  TGD  R+  +++    + D FM  V ++  W L  P+               
Sbjct: 159 EFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNT-------------- 204

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG 577
                         K+ + + A  LW ++L   F TG P++ F D  N       +    
Sbjct: 205 -------------SKIVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTKGL 251

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +  SNLC EI L +  + TAVC L S+NL        +D  K    +   VR+LDNV++
Sbjct: 252 KIRGSNLCNEIHLPTDKDRTAVCCLSSVNLE------MYDEWKDTDLVECVVRMLDNVME 305

Query: 638 INCH-------TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
                          A       R++G+G MG+   L    IP+    A  + DE    I
Sbjct: 306 DFISRAPTLSAHTANAVAGASGERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIFGAI 365

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A+SAS +LA E+G      G                                     
Sbjct: 366 KAAALSASKKLAAEKGEPPDLVG------------------------------------- 388

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                 G+RN++ +A+AP A  A + G S S++P   N YV    +G   + N +L  +L
Sbjct: 389 -----YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLERDL 443

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           ++ ++  + +   +  + GS+ ++   P+ L++++ TAFEID M ++  A+ RQ+ + Q 
Sbjct: 444 RELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHLCQG 503

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
           QS+NL+        KL  ++R AW +  K  YYLR+++       T + V  +  +   +
Sbjct: 504 QSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKA-----NRTSRKVFTEFFSSTAS 558

Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954
             N+ +             EC  CQ
Sbjct: 559 TSNNKS------------EECVACQ 571


>gi|228861250|ref|YP_002854273.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled
           turtle iridovirus]
 gi|194307530|gb|ACF42260.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled
           turtle iridovirus]
          Length = 565

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 171/626 (27%), Positives = 250/626 (39%), Gaps = 117/626 (18%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            +  +      F  S+P L  S T      SCFL  VPD + G+     E   L+   GG
Sbjct: 45  EKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +   W         + G + KS G IPFL   +    A  QG  R+G+  AY+   H D+
Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P               
Sbjct: 157 IEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKS------------- 203

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576
                           V   +SA  LW ++L   F TG P++ F D  N       ++  
Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKG 249

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
             +  SNLC EI L ++++ TAVC L S+NL  +      D  +    +   V +LDNVI
Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVEMLDNVI 303

Query: 637 DINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
                          +A +S    R+IGLG MG+   L    IP+ S EAV +       
Sbjct: 304 QTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRG 363

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A+ A+  LA+ERG      G                                    
Sbjct: 364 IKSAAVRATRALAKERGEAPDLTG------------------------------------ 387

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                  G+RN++ +A+AP A  A + G S S++P     YV    +G    VN +L  +
Sbjct: 388 ------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRAGSHQAVNPYLKRD 441

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q
Sbjct: 442 LESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQ 501

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            QSLNL+         L  ++R AW  G K  YYLR          T  G  G       
Sbjct: 502 GQSLNLFFPIGADKTNLSDVHRLAWKSGCKGLYYLR----------TCAGRTGHKIFEAK 551

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
             P  +              EC  CQ
Sbjct: 552 KSPEKT-------------EECTACQ 564


>gi|18656499|gb|AAL77800.1|AF389451_7 ribonucleoside-diphosphate reductase alpha chain [Tiger frog virus]
          Length = 565

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 171/626 (27%), Positives = 249/626 (39%), Gaps = 117/626 (18%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            +  +      F  S+P L  S T      SCFL  VPD + G+     E   L+   GG
Sbjct: 45  KKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +   W         + G + KS G IPFL   +    A  QG  R+G+  AY+   H D+
Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P               
Sbjct: 157 IEFITMRTPTGDVNRKNLNIHHGVNITDAFMRCVERGENWDLVDPKS------------- 203

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576
                           V   +SA  LW ++L   F TG P++ F D  N       ++  
Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKG 249

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
             +  SNLC EI L ++++ TAVC L S+NL  +      D  +    +   V +LDNVI
Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVEMLDNVI 303

Query: 637 DINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
                          +A +S    R+IGLG MG+   L    IP+ S EAV +       
Sbjct: 304 QTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKCRIPFDSEEAVRLTGIIFGG 363

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A+ A+  LA+ERG      G                                    
Sbjct: 364 IKSAAVRATRALAKERGEAPDLTG------------------------------------ 387

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                  G+RN++ +A+AP A  A + G S S++P     YV     G    VN +L  +
Sbjct: 388 ------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRD 441

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q
Sbjct: 442 LESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQ 501

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            QSLNL+         L  ++R AW  G K  YYLR          T  G  G       
Sbjct: 502 GQSLNLFFPMGADKTNLSDVHRLAWKSGCKGLYYLR----------TCAGRTGHKIFEAR 551

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
             P  +              EC  CQ
Sbjct: 552 KSPEKT-------------EECTACQ 564


>gi|49237335|ref|YP_031616.1| ribonucleoside diphosphate reductase alpha subunit barrel domain
           [Frog virus 3]
 gi|47060153|gb|AAT09697.1| ribonucleoside diphosphate reductase alpha subunit barrel domain
           [Frog virus 3]
          Length = 565

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 170/626 (27%), Positives = 251/626 (40%), Gaps = 117/626 (18%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            +  +      F  S+P L  S T      SCFL  VPD + G+     E   L+   GG
Sbjct: 45  EKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +   W         + G + KS G IPFL   +    A  QG  R+G+  AY+   H D+
Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EF+ +R  TGD  R+  +++    I D FM+ V +   W L  P               
Sbjct: 157 IEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKS------------- 203

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576
                           V   +SA  LW ++L   F TG P++ F D  N       ++  
Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDTANRGLHPALKRKG 249

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
             +  SNLC EI L ++++ TAVC L S+NL  +      D  +    +   V +LDNVI
Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVEMLDNVI 303

Query: 637 DINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
                          +A +S    R+IGLG MG+   L    IP+ S EAV +       
Sbjct: 304 QTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRG 363

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   A+ A+  LA+ERG      G                                    
Sbjct: 364 IKSAAVRATRALAKERGEAPDLTG------------------------------------ 387

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                  G+RN++ +A+AP A  A + G S S++P     YV     G    VN +L  +
Sbjct: 388 ------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRD 441

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   ++  A+ RQ+ + Q
Sbjct: 442 LESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQ 501

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            QSLNL+         L  ++R AW  G K  YYLR+ +  +  K      + K N    
Sbjct: 502 GQSLNLFFPIGADKTNLSDVHRLAWKSGCKGLYYLRTCAGRTGHK----IFEAKKNPEKT 557

Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954
                               EC  CQ
Sbjct: 558 -------------------EECTACQ 564


>gi|307353248|ref|YP_003894299.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
           [Methanoplanus petrolearius DSM 11571]
 gi|307156481|gb|ADN35861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoplanus petrolearius DSM 11571]
          Length = 722

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 172/656 (26%), Positives = 272/656 (41%), Gaps = 95/656 (14%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L  RY            +    RVA  LA  E ++E     FY  ++S  F+ ++PTL N
Sbjct: 11  LSARYLRKGEK----TFEDICHRVASALASDEKDREL----FYEAMTSLRFLPNSPTLMN 62

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT   QLS+CF   VPD + GIF A+++ A++ K  GG G +++ +R  G+ +  T+G 
Sbjct: 63  AGTEIGQLSACFTLPVPDSIPGIFDAMKQGAVIHKTGGGTGYNFSHIRAEGSPVRSTDGV 122

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + F+K  N     + QGG+R+GA    L  WH D+  F+  +K    +     + N
Sbjct: 123 ASGPVSFMKAFNAATDVIKQGGRRRGANMGILNVWHPDILSFITSKK----EEGSISNFN 178

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
            +  + D FM  V                             E + +    G      K+
Sbjct: 179 ISVMVNDEFMTLVRDR-----------------------KFDEIWIKHPVTGV-----KV 210

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           +   +W  ++  +++ G P + F D  N  +P   +G +  +N C E  L         C
Sbjct: 211 TVGEIWNGIVDGIWKNGEPGVLFYDEINRHNPTPGLGDIDITNPCGEQPLLPF----ESC 266

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            LGSINL A     +FD + L  T+R AVR L+NVID N + I + +++    R IGLG+
Sbjct: 267 VLGSINLAACINEGKFDEELLDDTVRMAVRFLNNVIDANVYPIPEIEEATKKTRKIGLGV 326

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MG   AL +L IPY SP   +   E M  I+  A+  S  LA++ G +  ++ S W    
Sbjct: 327 MGVHDALLMLKIPYDSPGGRKWCGEIMHRITETAVEESQLLAEKLGTFPEWEKSTW---- 382

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                                            K   +RN+    +APT TI+ + G S 
Sbjct: 383 ---------------------------------KERKVRNAAMTTVAPTGTISLLAGCSS 409

Query: 781 SIDPSYQNLYVKSNMSGD-FTVVNSFLVNE----LKQRDLWDEAMISD------LKYHDG 829
            I+P +   Y + N  G  F +V+          L ++    + +           +  G
Sbjct: 410 GIEPVFSFAYTRMNTVGKTFFIVSPVFKEALHSTLSEKGHSGDELKKREEEVIAHVHDTG 469

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
           SI ++E +P D + +  TA +I     IE  +  QK++  + S  + +      K  +  
Sbjct: 470 SIQDLEWLPADFRSLFKTALDISYRDHIEMQAVFQKYVHASISKTINMPNSAERKDCEEA 529

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
              AW +GLK     R+ S  SV  S   G   K                G    C
Sbjct: 530 LLAAWTLGLKGITIYRTGSRDSVVLS--LGNSEKTAPAQGQGIERPKELAGRTYMC 583


>gi|317154786|ref|YP_004122834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945037|gb|ADU64088.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 748

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 177/664 (26%), Positives = 301/664 (45%), Gaps = 86/664 (12%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-------TEKEKRAVE 341
           D         +L  RY      G   E  +  F RVA  +A +E        +    A +
Sbjct: 12  DPIINENAKIVLARRYQKKDAEGIVYETVKELFWRVASAIAAEEAKYDGSSCKPATLARD 71

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY+L++S+ F+ ++PTL N+GT   QL++CF+  V D +  IF A++  AM+ K  GG G
Sbjct: 72  FYDLMTSYSFLPNSPTLMNAGTGLGQLAACFVLPVADSIEDIFDAVKHAAMIHKSGGGTG 131

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R   + +  T G + G + FL++ N     + QGG R+GA    L   H D+ E
Sbjct: 132 FSFSRLRAKDSVVGSTGGVASGPLSFLRIFNCATEQIKQGGTRRGANMGILRVDHPDIME 191

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  ++  G+      + N +  + + FM+ V +N  + L +P+                
Sbjct: 192 FIKAKERDGELN----NFNLSIGLTEAFMRAVEKNEEFDLMAPNS--------------- 232

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                        +V  K++A  ++  ++   +E+G P I F D  N  +P   +G + S
Sbjct: 233 ------------GQVVEKLNAREVFNLLVQKAWESGDPGIVFLDRINRDNPTPALGEIES 280

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNV 635
           +N C E  L         CNLGSINL   +       +++ ++D+L   I  +VR LDNV
Sbjct: 281 TNPCGEQPLLPY----EACNLGSINLGKCYAKGKNGHDSEVNWDELRRIIHLSVRFLDNV 336

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           ID + + + +  +    +R IGLG+MG+   L  L I Y S  AV++A+  M+F+   A 
Sbjct: 337 IDASVYPLSEITEMVGKNRKIGLGVMGWADLLFQLDIAYNSQTAVDLAERVMKFMRDEAR 396

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           SAS +LA ERG + ++  S++                  +  +                 
Sbjct: 397 SASKQLAAERGPFPAYAESVF-----------------GKANLGPY-------------- 425

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814
              RN+    IAPT T++ I G S  ++P +   +V++ M  D     N F    LKQ D
Sbjct: 426 ---RNATTTTIAPTGTLSIIGGCSSGVEPLFALSFVRNVMDNDKLVESNPFFETALKQAD 482

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
            +   ++ ++    G+I  +E +P DL++++ TA +I+P+W ++  +  QK+ D A S  
Sbjct: 483 AYSPKLMEEIAKV-GTIRKMEHLPHDLRRVYVTAMDIEPIWHLKMQAAFQKYTDNAVSKT 541

Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + L    + + +  IY +A+  G K     R  S TS    T  G     +A        
Sbjct: 542 VNLPGSATREDIWDIYWKAYEYGCKGVTVYRDGSKTSQVLCTGDGDKKMDDAKAGKSVVK 601

Query: 934 STHS 937
           +   
Sbjct: 602 ARPD 605


>gi|317121176|ref|YP_004101179.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter marianensis DSM 12885]
 gi|315591156|gb|ADU50452.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter marianensis DSM 12885]
          Length = 881

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/620 (24%), Positives = 256/620 (41%), Gaps = 88/620 (14%)

Query: 301 LYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTP 356
             DRY     +G  +E  P+  + RVA  +A  E   ++E     F   L  F F+    
Sbjct: 11  FLDRYARKGPDGKPVESSPEEMWDRVARAIAEVEEPGQREVWERRFRQALEGFKFVPGGR 70

Query: 357 TLFNSGTRHP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            L  +GT +     +C++   P D   GI   +     +    GG+G + + +R  G ++
Sbjct: 71  ILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGTYV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G NG + G + + +V +    +V QGG R+GA+   L+  H D+EEF+ +++    D  
Sbjct: 131 RGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----DLT 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  + N +  I D FM+ V Q+  W L                                 
Sbjct: 187 KITNANLSVCISDAFMEAVQQDLPWDLKW-----------------------------NG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV++ + A  LW  +    + +G P + F +  N RS   +   ++  N C E  L    
Sbjct: 218 KVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPCGEQPLGP-- 275

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT-H 653
               VCNLG+INL A     + D + L  T+  AVR LDNVID   +   + +K+     
Sbjct: 276 --WGVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATEYFFPENEKAQRYGV 333

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG MG    L  L I Y S +A E+ D+    I   A   S  LA+E+GA+  F  
Sbjct: 334 RRIGLGTMGLADMLIKLRIRYGSEKAFEVCDQVYRLIRDEAYRTSALLAKEKGAFPWFDK 393

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             + QG F                     +   +++++ +   G+RN   +  APT T +
Sbjct: 394 EKYLQGWF--------------------IQRLPEDIRQLIAQHGIRNGFLLTQAPTGTTS 433

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + GVS  I+P +   + +++ +G   V +      L++                     
Sbjct: 434 LLAGVSSGIEPVFAFSFKRTDRTGTHIVYHELYKEWLEKHP------------------- 474

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892
                + +     +A ++ P   +   +  Q+++D + S  +    E +  ++  +YR A
Sbjct: 475 ----DEPVPDYFVSADQLTPEEHVRMQAIIQQYVDASISKTVNAPREHTVDQVRTLYRLA 530

Query: 893 WLMGLKTTYYLRSRSATSVE 912
           + +G K   Y R  S   V 
Sbjct: 531 YELGCKGITYYRDGSREGVL 550


>gi|326204958|ref|ZP_08194810.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium papyrosolvens DSM 2782]
 gi|325984887|gb|EGD45731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium papyrosolvens DSM 2782]
          Length = 795

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 165/674 (24%), Positives = 287/674 (42%), Gaps = 95/674 (14%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343
                  +++L  RY     NG+ +E     F RVA  +A  +              EFY
Sbjct: 1   MKLSDNAVKVLEKRYLEKDENGNLLEDCDGMFRRVAKAIASADAAYTDEKGLAAIEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++++  F+ ++PTL N+G    QLS+CF+  V D + GIF +++  A++ K  GG G  
Sbjct: 61  DMMANLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  G+ ++ T G + G I F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRAKGSAVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             + +  +      + N +  I + FMK V  N  + L  P                   
Sbjct: 181 SCKSDNSE----ITNFNLSVGITEDFMKAVEHNLEYELLDPKT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +   K++A  ++  ++ M ++ G P I F D  N  +    +G + S+N
Sbjct: 220 ----------KEPVAKLNAKEVFDIIVEMAWKNGEPGIIFLDRLNRDNVTPKLGEIESTN 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCH 641
            C E  L         CNLGSINL     ++    D++KL +T+R AVR LDNVI++N +
Sbjct: 270 PCGEQPLLPY----EACNLGSINLYNMMDDSHKGLDFEKLENTVRKAVRFLDNVIEVNKY 325

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +  K     R IGLG+MG+   L  L + Y S  A+++AD+ M FIS  A+ AS  L
Sbjct: 326 PLPEIDKMTRGTRKIGLGVMGWADTLCALGLAYNSQAAIDLADKVMSFISDIAMKASQNL 385

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+ +G +  ++ S++DQ                 + +   +                   
Sbjct: 386 AELKGVFPFYEDSIYDQ---------------KGIKVRNATTTTIAPTGTL--------- 421

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAM 820
                      + I GVS  I+P +   Y+++ M + +   VN          + + E +
Sbjct: 422 -----------SLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKGAALSGNFYSEEL 470

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +  +    G++ N+  +P  +++I  TA ++ P W ++  +  Q+  D A S  + L  +
Sbjct: 471 MKKIARV-GTVKNMNEVPVQVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNLSHD 529

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            +   +  ++  A+    K     R  S      +  K    + NA        + +   
Sbjct: 530 ATTDDVREVFTLAYKTQCKGVTIYRDGSRDLQVLNIGKVKGKEENADKELQAGENIY--- 586

Query: 940 IPSSCTSDTECEVC 953
                     C+ C
Sbjct: 587 ----------CDSC 590


>gi|269925171|ref|YP_003321794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269788831|gb|ACZ40972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 811

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 165/689 (23%), Positives = 281/689 (40%), Gaps = 96/689 (13%)

Query: 276 FDLVYLAND-LKYERDFAFEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKE 332
            DL       +   R    E    +I  DRY     NG+ +E  P+  ++RVA  +A  E
Sbjct: 16  EDLEREVQALIDSGRATKLEGYREKIFLDRYARKDPNGTPLEHYPEEMWLRVAKAIAAVE 75

Query: 333 TEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVP-DDLYGIFGAL 387
              E   +  + FY++L  F F+     L  +G+       +CF+   P D + GIF  +
Sbjct: 76  PNPEAQRQWTLRFYDILQGFRFVPGGRILSGAGSGAEVTYYNCFVIPSPEDSVEGIFRNI 135

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA-VNQGGKRKG 446
              A + + SGG+G + + +R  GA+I   NG S G   +  + +D     + QGG R+G
Sbjct: 136 TTAAHIMRRSGGVGVNLSSLRPRGAYIKTVNGTSSGPCSWAILYSDMTGKVIIQGGSRRG 195

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+   L+  H D+EEF++ ++            N +  + D FM+ V ++  W L     
Sbjct: 196 ALMIMLDDDHPDIEEFVEYKRKNPG---HIDHANLSVAVSDAFMEAVKKDLPWDLKW--- 249

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                                     + KV++ I A  LWRK+    +    P + F D 
Sbjct: 250 --------------------------QGKVWKTIRARDLWRKIAESAWAYAEPGLVFIDR 283

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLA 622
            N RS   +   +   N C E  L        VCNLG++NLLA   +      FD++ LA
Sbjct: 284 YNKRSNTWYFENIRCVNPCGEQGLPP----WGVCNLGALNLLAFVKHIDGETYFDFEDLA 339

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHT-HRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           +T R A+R LDNVID   +   + +++     R  GLG MG    L  L + Y SPEA  
Sbjct: 340 NTARVAIRFLDNVIDATVYPFPENEEAQKHGARRTGLGTMGLADVLIKLGVKYGSPEAEP 399

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           + +     I   A  AS +LA E+G +  F    + QG F                    
Sbjct: 400 LVERIYRTIRDAAYDASADLAAEKGPFPKFDRDKYMQGEF-------------------- 439

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            R   +E++ +++  G+RN+  +  APT T +++ GV+  I+P +  +  + +  G+  +
Sbjct: 440 IRELPEEIQAKIRRQGIRNAVLLTQAPTGTTSSLAGVNSGIEPVFAFVTKRRDRLGEHLL 499

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
            +      +                           P  L     ++ ++ P   I   +
Sbjct: 500 YHPLAQEWMDAH---------------------PGKP--LPDYFVSSADLTPEEHIRIQA 536

Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             QK+ D + S  +   ++ + + ++ +Y  A+  G K   Y R  S  +V ++      
Sbjct: 537 VVQKYTDSSISKTVNGPEDNTVEDVERLYMLAYDTGCKGITYYRQGSRDAVLEAV--DTK 594

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            K  A    +   ++H     S+     +
Sbjct: 595 PKEKAEKPEEAPKASHPEVHRSTLKKRPD 623


>gi|124485031|ref|YP_001029647.1| hypothetical protein Mlab_0204 [Methanocorpusculum labreanum Z]
 gi|124362572|gb|ABN06380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanocorpusculum labreanum Z]
          Length = 736

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 159/624 (25%), Positives = 265/624 (42%), Gaps = 92/624 (14%)

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
           +    RVA  L     E      E+++ + S  F+ ++PTL N+GT   QLS+CF   V 
Sbjct: 23  EDVCRRVADALGETPEE----TKEYFDAMMSLSFLPNSPTLMNAGTPLGQLSACFTLPVN 78

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  IF A++  A++ +  GG G +++ +R  G+ +  T+G + G + F++V N     
Sbjct: 79  DSLPEIFDAIRWGAIIHQSGGGTGYNFSHLRPEGSPVRSTDGVASGPVSFMRVFNAATDV 138

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           + QGG+R+GA    L  WH D+ +F+  +   GD      + N +  + D FM  V +  
Sbjct: 139 IKQGGRRRGANMGILNVWHPDIMKFIKSKAKEGD----FSNFNISVMVSDAFMDLVAKGE 194

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
                                +  +                 I+   +W  ++  +++ G
Sbjct: 195 K--------------------DKVWVTNTDGVG---------ITVGEIWEGIIEGVWKNG 225

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P I F D  N ++P  ++G + ++N C E  L         C LGSINL      +  +
Sbjct: 226 EPGILFYDTINRKNPTPNLGEIDTTNPCGEQPLLPF----ESCVLGSINLAKFIRADGLN 281

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y+ L    R  +R LD VI  N   I + + + +  R +GLGLMG   A+ +L IPY S 
Sbjct: 282 YEALDKMTRMGIRFLDAVITKNVFPIPEIRDATNRTRKVGLGLMGVHDAMLMLRIPYDSE 341

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
                  E ME I+  A+  SV L +E+G + +++GS+WD                    
Sbjct: 342 AGRNFCIEVMERINNVAVEESVILGKEKGTFPAYEGSVWD-------------------- 381

Query: 738 MNRTSRLPWDELKKRVKTIG--MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                              G  MRN+    IAPT TI+ + G S  I+P +   Y + N 
Sbjct: 382 -----------------KQGIIMRNAALTTIAPTGTISLLAGCSSGIEPVFSFAYTRRNT 424

Query: 796 SGD-FTVVNSFLVNELKQ-------RDLWDEAMISDLKYH---DGSIGNIERIPDDLKKI 844
            G  F +V+ +  +EL++            EA   ++  H    GS+ +I  +PD  K +
Sbjct: 425 VGKTFVMVHPYFESELRRVITAMGLTGAEAEAKRDEVINHVHETGSVQDIAWLPDTFKAV 484

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
             TA +I     +   +  QK +  + S  + +    + + ++     AW  G+K     
Sbjct: 485 FKTALDIGWKDHVLMQAAFQKHVHASISKTINMPVTATKEDVEKAVILAWREGIKGMTLY 544

Query: 904 RSRSATSVEKSTLKGVDGKLNAVP 927
           R+ S   V  +  K     + A P
Sbjct: 545 RTGSREDVVLALEKQEIKPVEASP 568


>gi|320353411|ref|YP_004194750.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobulbus propionicus DSM 2032]
 gi|320121913|gb|ADW17459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfobulbus propionicus DSM 2032]
          Length = 723

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 157/659 (23%), Positives = 265/659 (40%), Gaps = 80/659 (12%)

Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAVEFYNLLS 347
                   +L  RY+L    G  +E  +    RV+  +A  +    + E  A  F+ ++ 
Sbjct: 9   QLTDTAETVLERRYYLKDAEGKPLENWETLCRRVSNAVAQVDLDQPDYEGLADRFFTMIY 68

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              F+ ++P L N+GT   QLS+CF+  V D + GIF +++  A++ K  GG G  ++ +
Sbjct: 69  YLDFLPNSPCLMNAGTDLGQLSACFVLPVEDSMDGIFTSIRNGALVHKTGGGTGYSFSRL 128

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R   + +  T G + G + F  V +     + QGGKR+GA    L   H D+ EF+  ++
Sbjct: 129 RPKNSAVQSTQGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDILEFIVAKQ 188

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D+ R  + N +  I DLFM+ V  +  + L  P                       
Sbjct: 189 ----DQTRYTNFNFSVAITDLFMEAVKNDQEYDLIDPS---------------------- 222

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   + R + A  ++ K++ + +  G P + F D  N  +    +G   ++N C E
Sbjct: 223 -----NGDIIRTLRAREVFDKIVDLAWHNGEPGVLFIDAANRDNTTPQLGKFEATNPCGE 277

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             L         CNLGSINL  +  N + D+++L +T R AVR LDNVID N   I +  
Sbjct: 278 QWLLPY----ESCNLGSINLGQYVKNGKVDWERLGATARLAVRFLDNVIDCNRFPIPEIA 333

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R +GLG+MG    L  L +PY S E  + A E M F+   A +AS+ELA  +G 
Sbjct: 334 EMTQKTRKVGLGIMGLHDMLIQLELPYGSEEGRQAAAEVMAFVRTEAEAASIELATMKGP 393

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           + ++            +        R                          N+   +I 
Sbjct: 394 FPAYD-----------ERFNTYPARR--------------------------NAALTSIQ 416

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT T++ I   +   +P +  + +K+ M  D   +VN       +    +   ++  +  
Sbjct: 417 PTGTVSMIADCASGCEPYFSIVMIKNVMDNDRLLMVNKLFERIARAEGFYSAELMEKVAK 476

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLD-EPSGKK 884
             G++     IP   ++I  TA +I P   I      QK  +D + S  + L    +   
Sbjct: 477 S-GTVIGHAAIPKRWQEIFRTAQDISPEQHIRMQGVLQKNGVDSSISKTINLPSSATQDD 535

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           +   Y   + +G K     R  S      +T+     K                 + S+
Sbjct: 536 VRTAYMLGFELGCKGLTVYRDGSRDHQVLNTVASSADKTAVAGSEGLVQKATLPDVLSA 594


>gi|317052120|ref|YP_004113236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurispirillum indicum S5]
 gi|316947204|gb|ADU66680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfurispirillum indicum S5]
          Length = 725

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 161/650 (24%), Positives = 268/650 (41%), Gaps = 80/650 (12%)

Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAVEFYN 344
           R  +       +L  RY+L    G  +E  +    RVA  +AL +    + E+    F++
Sbjct: 6   RKVSLTETAETVLQRRYYLKDAQGHPVENWEKLCRRVANAVALPDRELDDYEEVRDHFFS 65

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L+ S  F+ ++P L N+GT   QLS+CF+  V D + GIF A++  A++ K  GG G  +
Sbjct: 66  LIYSLDFLPNSPCLMNAGTGIGQLSACFVLPVEDSMEGIFTAVKNGALVHKTGGGTGYSF 125

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R   A +  T G + G + F  V +     + QGGKR+GA    +   H D+ +F+ 
Sbjct: 126 SRLRPRNATVSSTQGVASGPLSFAAVFDVATETIKQGGKRRGANMGVMRVDHPDIMDFI- 184

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
                 +D+ R ++ N +  I D FM+ +     + L  P                    
Sbjct: 185 ---CAKEDQTRFNNFNFSVAITDEFMQALYDEREYALVDPVT------------------ 223

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                     ++   ++A  ++ K++ + +  G P + F D  N  +P   +G   ++N 
Sbjct: 224 ---------KEIVSSLNARTVFDKIVDLAWHNGEPGVLFIDAANRANPTPQLGEFEATNP 274

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C E  L         CNLGSINL       + DYD+LA T R A R LDNVID N   I 
Sbjct: 275 CGEQWLLPY----ESCNLGSINLGNFVEGGRVDYDRLARTTRLATRFLDNVIDCNVFPIP 330

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + K+     R IGLG+MG    L  + + YAS E  ++  E M++I   +   S+ELA+ 
Sbjct: 331 EIKEMTMKTRKIGLGIMGMHDMLIQMGLSYASNEGRKLCAEVMKYIRTISEETSIELAKV 390

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G +               D        R                         RN+   
Sbjct: 391 KGPFP------------AFDPAINTYTPR-------------------------RNAALT 413

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823
           +I PT T++ I   +   +P +  + VK  M GD   +VN       +    +   +++ 
Sbjct: 414 SIQPTGTVSMIADCASGCEPYFSIVMVKHVMDGDKLLMVNKHFEEIARAEGFYSTELMAR 473

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLDE-PS 881
           +    G++   E IP   ++I  TA +I P   I+     Q+  +D + S  + +    +
Sbjct: 474 VADS-GTVVGHEEIPVKWQEIFCTAQDITPSDHIQMQGILQQSGVDSSISKTINMPNTAT 532

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + +   Y   + MG K     R  S      +T    +       V   
Sbjct: 533 KEDVRLAYLMGYEMGCKGLTVYRDGSRDGQVLNTKSASEASQKEAMVNSQ 582


>gi|237756543|ref|ZP_04585069.1| ribonucleoside-diphosphate reductase subunit alpha
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691302|gb|EEP60384.1| ribonucleoside-diphosphate reductase subunit alpha
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 538

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 188/575 (32%), Positives = 289/575 (50%), Gaps = 85/575 (14%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ +    A+ QGG+R+ +   YL+ WH+DVE FLDLR+ TG+   RT  +NTA W+PD
Sbjct: 1   IKIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPD 60

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
             M+R+ +     LF P E   L   +G+EF   Y+    +A+RGE+++++KI +   ++
Sbjct: 61  EIMRRIKEGEPIYLFDPAECRQLVTAWGEEFAKKYQECIEKAERGELQLWKKIDSRDFYK 120

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K L  L +TGHPW+TFKD  N  +P    GV++SSNLCTEI++ +S + TAVC L S+NL
Sbjct: 121 KYLFKLAKTGHPWLTFKDAHNRHNPCPKYGVINSSNLCTEISIPNSPQSTAVCTLASVNL 180

Query: 608 LAHFAN--------------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             H                       +  D+DKL  T+ T V  LDN++D N +  E+++
Sbjct: 181 ERHLKKVEREESNSNETTSHVSRFTSHVIDWDKLKDTLETMVVALDNILDKNFYPSEESR 240

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           ++    R IG+GLMGF  AL  L IPY S EAV++A E  +F+       S ELA+ERGA
Sbjct: 241 RNTMDLRPIGIGLMGFHEALIYLGIPYDSDEAVQLAKEIAKFMRETVYRKSEELAKERGA 300

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +    +D                                         RN+  +AIA
Sbjct: 301 FPHYYEGNYDYPP-------------------------------------RRNAVLLAIA 323

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PTA+I+ I G S SID  + N++ +  +SG F VVN  L+  L+++ +W+E ++  +K +
Sbjct: 324 PTASISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEILEKIKAN 383

Query: 828 DGSIGNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            GSI  I+ +   + K++  TA+E+ P   I+ A+  Q++IDQA S +LY++E     ++
Sbjct: 384 QGSIQYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDME 443

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-----------------------GKL 923
            IY  AW  GLK+TYY         EK T+                            ++
Sbjct: 444 SIYMYAWEKGLKSTYYCFIDKTIKGEKYTMNVNKRGERRGFGLARAKDQVNKDLEELERM 503

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDT----ECEVCQ 954
                 D        G   +C +D      C  C+
Sbjct: 504 AREKYGDEVVDKVKAGNLDACPTDPLLAKICPSCE 538


>gi|45686076|ref|YP_003839.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum virus]
 gi|37722500|gb|AAP33245.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum stebbensi
           virus]
          Length = 565

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 252/632 (39%), Gaps = 117/632 (18%)

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            K K A +  +      F  S+P L  S T      SCFL  VPD + G+     E   L
Sbjct: 39  CKPKLAEKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWL 97

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +   GG+   W         + G + KS G IPFL   +    A  QG  R+G+  AY+ 
Sbjct: 98  SVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMS 150

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+ EF+ +R  TGD  R+  +++    I D+FM  V +   W L  P         
Sbjct: 151 ISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDVFMMCVERGENWDLVDPKS------- 203

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP- 572
                                 V   +SA  LW ++L   F TG P++ F D  N     
Sbjct: 204 --------------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHP 243

Query: 573 --QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
             ++    +  SNLC EI L ++++ TAVC L S+NL  +      D  +    +   V 
Sbjct: 244 ALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVE 297

Query: 631 VLDNVIDINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           +LDNVI               +A +S    R+IGLG MG+   L    IP+ S EAV + 
Sbjct: 298 MLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLT 357

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
                 I   A+ A+  LA+ERG      G                              
Sbjct: 358 GIIFGGIKSAAVRATRALAKERGEAPDLTGC----------------------------- 388

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
                        G+RN++ +A+AP A  A + G S S++P     YV     G    VN
Sbjct: 389 -------------GVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVN 435

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L  +L+   L  E +   +  + GS+ +I  +PD LKK++ T+FE+D   +++ A+ R
Sbjct: 436 PYLKRDLESLGLDTEKVWDSIVLNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVKQAAER 495

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Q+ + Q QSLNL+         L  ++R AW  G K  YYLR          T  G  G 
Sbjct: 496 QRHLCQGQSLNLFFPMGADKTDLSDVHRLAWKSGCKGLYYLR----------TCAGRTGH 545

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                   P  +               C  CQ
Sbjct: 546 KIFEAKKSPEKTK-------------GCTACQ 564


>gi|126725814|ref|ZP_01741656.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2150]
 gi|126705018|gb|EBA04109.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2150]
          Length = 757

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 159/654 (24%), Positives = 258/654 (39%), Gaps = 85/654 (12%)

Query: 302 YDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G  +E   +  + R+A  LA  E + +    +FYN L  F F+ +      
Sbjct: 15  MKYRLKDEDGKALETSVEDSWRRIANDLASVEKDPKAWEGKFYNALEDFKFLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTGRAVTLFNCFVMGTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAVVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +K    D  R   
Sbjct: 135 ADASGPLSFMDVWDSMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAKK----DAARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  + GW L                                 KV+R
Sbjct: 191 FNVSVLITDPFMEAVKADKGWDLVFG-----------------------------GKVYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW  ++   +E   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVQARDLWDSIMESTYEFAEPGVIFIDRINKMNNLNYCESIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL            Q D   LA  + TAVR++DNV+D +   +E   +     
Sbjct: 278 ACLLGSINLARLVADPFGKAAQLDEPALADLVTTAVRMMDNVVDASKFPLEAQAREAAAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S EA  +++  ++ I+  A  AS  LA E+GA+  F+ 
Sbjct: 338 RRIGLGVTGLADALLMVGVRYGSEEAARLSERWLKAIARAAYLASAHLAGEKGAFPLFEA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                                    + +      ++K  +   G+RN+   +IAPT TI+
Sbjct: 398 EP--------------------FLASGSLEDMDQDVKDAIAENGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   M  D         
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YSVKMWRD--------- 481

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
             +    +L      A  + P+  +   S  QKWID + S  +    + S      +Y  
Sbjct: 482 --KFGDAELPDYFVNAQTLAPLDHVRMQSAAQKWIDSSISKTINCPEDISFDDFKEVYMA 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           AW  G K     R  + T    +  +  D    A    D    +  L  P S  
Sbjct: 540 AWDQGCKGCTTYRPNAVTGSVLTVSETSDAAPEADVGADVVYLSEPLERPQSLE 593


>gi|283832327|ref|ZP_06352068.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071974|gb|EFE10083.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 653

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 170/666 (25%), Positives = 266/666 (39%), Gaps = 59/666 (8%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317
           +E G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  
Sbjct: 2   VEMGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 61

Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           Q  ++ VA  L        + +    FY+ +S+F     TP +    T   Q SSC L  
Sbjct: 62  QFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 121

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I               G+G +   +R LG+ I G      G IPF K      
Sbjct: 122 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 181

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +
Sbjct: 182 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 241

Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
               TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+  
Sbjct: 242 GGDITLFSPSDVPGLYDAFFADQDEFERLYTQYE----NDDSIRKQRVKAVELFSLMMQE 297

Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
              TG  +I   D CN  SP    V  V  SNLC EI L +          G I L    
Sbjct: 298 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLS 357

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                     D+L      AVR LD ++D   + I  AK+     R +G+G++ +   L 
Sbjct: 358 AFNLGAINSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYWLA 417

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                Y+   A  +  ++ E I ++ + AS ELA E+GA   F  + + QG+ PID+   
Sbjct: 418 KNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYSQGILPIDTYKK 477

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +       N    L W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 478 DLDAI----SNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGY 533

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + +K++  G    V                                    + L   +   
Sbjct: 534 VSIKASKDGILRQVVPDY--------------------------------EHLHDAYELL 561

Query: 849 FEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900
           +E+      ++     QK+IDQ+ S N   D       +   ++L      A+  G+KT 
Sbjct: 562 WEMPSNDGYLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTL 621

Query: 901 YYLRSR 906
           YY  +R
Sbjct: 622 YYQNTR 627


>gi|146279531|ref|YP_001169689.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557772|gb|ABP72384.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 753

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 152/640 (23%), Positives = 256/640 (40%), Gaps = 85/640 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + R+A  LA  E + +     FY  L  F F+ +      +GT     L +CF+ 
Sbjct: 30  TVEDTWRRIARSLAEVEADPQLWEDRFYAALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD + GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV++ + A  LW +++   
Sbjct: 206 KADGPWDLTFG-----------------------------GKVYKTLEARDLWNRIMRST 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +   + ++N C E  L         C LGS+NL      
Sbjct: 237 YDFAEPGVIFIDRINRMNNLAYCETIAATNPCGEQPLPPY----GACLLGSVNLARLVTG 292

Query: 614 NQFDYDKLAST-----IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              D  +L        +R AVR++DNV+D +   + +        R IGLG+ G   AL 
Sbjct: 293 AFSDEARLDLAALDDLVRLAVRMMDNVVDASRFPLPEQANEAQMKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           ++ + Y S EA E  +  M+ I+  A  ASV+LA+E+GA+  F+   +            
Sbjct: 353 MVGLRYGSEEAAERTEAWMKAIARSAYLASVDLAREKGAFPLFEAEKY------------ 400

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                     + +     +++++ +++ G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 401 --------LASGSLTHMDEDVREAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D T     +V+   +  LW E M                    L      
Sbjct: 453 YAYKRKVLQKDGTRTEEEVVDYAVR--LWREKMGD----------------APLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  +   +  QKWID + S  +    + S      +Y  AW  G K     R  
Sbjct: 495 AQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDDFADVYLAAWDQGCKGCTTYRPN 554

Query: 907 SATS-VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             T  V   +              +    T  L  P++  
Sbjct: 555 EVTGSVLTVSEAAAAPAPTPEKAGEVVYLTDPLDRPAALE 594


>gi|327198237|ref|YP_004306813.1| putative ribonucleotide reductase A subunit [Pseudomonas phage
           KPP10]
 gi|297591763|dbj|BAJ09183.1| putative ribonucleotide reductase A subunit [Pseudomonas phage
           KPP10]
 gi|323145835|gb|ADX32076.1| hypothetical protein nrdE [Pseudomonas phage P3_CHA]
 gi|323146021|gb|ADX32261.1| hypothetical protein nrdE [Pseudomonas phage PAK_P3]
          Length = 618

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 183/705 (25%), Positives = 278/705 (39%), Gaps = 135/705 (19%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y  D      GL +L    F          PQ    R A+     + +    A   Y 
Sbjct: 13  IDYSLDRTIPEQGLAMLTSDGFYKKEHET--SPQQTLSRAAVSYCFGDYD---FAQRMYG 67

Query: 345 LLSSFHFMCSTPTLFNS-----------------------GTRHPQLSSCFLTTVPDDLY 381
             S    + ++P   N+                               SCFL+ + D   
Sbjct: 68  YFSRQWAVPASPVQTNALDIEWPNFTEEQFDEAGDWLQENIDTTGMPISCFLSMIADSRK 127

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           G+  A  E   L+              G+ A I   +  S GVI      +    A  Q 
Sbjct: 128 GLTTASGEAKELSMA--------GGGVGVYAGIRAPDELSTGVIEHAGDYDVMCRAYRQT 179

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
             R+G++  YL+  H +   FL +R    GD + +  ++N    IPD FM+ V +   W 
Sbjct: 180 RTRRGSMAMYLDVAHPEFPVFLQMRNPVGGDPKLKRFNLNNGANIPDAFMEAVIKGEDWE 239

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
              P                              K  RK+ A  LW +ML +  +TG P+
Sbjct: 240 FVDPKH---------------------------GKTGRKVPARELWEEMLQVRKDTGEPF 272

Query: 561 ITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
           + F D  N          +  V  SNLC+EITL +S + TAVC L S+NL  +       
Sbjct: 273 MLFVDTVNRNLPECITHPLYRVRQSNLCSEITLYTSFKRTAVCCLSSVNLGTYDE----- 327

Query: 618 YDKLASTIRTAVRVLDNVIDINC----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
           +      I   VR LDNV++        ++ +A  S    RAIGLG MGF + L    IP
Sbjct: 328 WKDDPLFIADMVRFLDNVLEFFIRLAPPSMHRAVHSASKERAIGLGTMGFHTLLQQRMIP 387

Query: 674 YA---SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           +         ++  +  + I   A+ AS+EL + RG     +GS                
Sbjct: 388 FESGGMGGMQQLNYQVYKQIKEQAVQASLELGRSRGEAPDCQGS---------------- 431

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                                     G RNS+ +AIAP A  +++  VS S +P   N +
Sbjct: 432 --------------------------GRRNSHLLAIAPNANSSSLVNVSPSTEPWAGNCF 465

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
                +G F + N +L  EL++  L  +     +   +GS  +IE + D++K +  T  E
Sbjct: 466 NAQGRAGSFLIKNEYLRRELEKVGLDTKETWRSINDAEGSCQHIEGLSDEVKAVFKTIRE 525

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I PMWLIE+A+ RQ +I Q+QS+NLY+  + + +++  I+  AW  GLK+ YY RS++A 
Sbjct: 526 ISPMWLIEAAAGRQPFICQSQSVNLYVHPDITLQEMSDIHIYAWHKGLKSLYYCRSKAAK 585

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           S++  T  G    LNA+PV                  +  C  CQ
Sbjct: 586 SMKVGT--GGAEPLNALPVRYT-----------ISLDEDTCLSCQ 617


>gi|320538994|ref|ZP_08038669.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia
           symbiotica str. Tucson]
 gi|320030927|gb|EFW12931.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia
           symbiotica str. Tucson]
          Length = 656

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 168/691 (24%), Positives = 271/691 (39%), Gaps = 57/691 (8%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIE 315
           R +E G   +LL E     +   +   + + RD  F Y  ++ L  +Y     ++G   E
Sbjct: 2   RMVEMGKYDKLLLEDYSAEEFEQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYE 61

Query: 316 MPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
             Q  ++ VA  L        +      FYN +S+F     TP +    T   Q SSC L
Sbjct: 62  SAQFLYILVAACLFSNYPRETRLDYVKRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVL 121

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 122 IECGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 181

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    +  L  +R+
Sbjct: 182 AVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRL 241

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+  +     EFE  Y  YE+     +    +++ AV L+  M+
Sbjct: 242 IKGQDITLFSPSDVPGLYAAFFADQDEFERLYTEYEQD----DSIRQKRVKAVELFSLMM 297

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
                TG  +I   D CN  SP       V  SNLC EI L +   +      G I L  
Sbjct: 298 QERASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCT 357

Query: 610 ---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                     + D L      AVR LD ++D   + I+ A +     R +G+G++ F   
Sbjct: 358 LSAFNLGTIDNLDDLEELATLAVRSLDALLDYQDYPIKAAHRGAMGRRTLGVGVINFAHY 417

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    + Y+   A  +  ++ E I ++ + AS  LAQE+GA   F  + + QG+ PID+ 
Sbjct: 418 LAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETSYSQGILPIDTY 477

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +    +  N      W+ L++ ++  G+ NS   A+ P+ T + I   +  I+P  
Sbjct: 478 KKDLD----VICNEPLHYDWETLRQEIQETGLSNSTLSALMPSETSSQISNATNGIEPPR 533

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            ++ +K++  G    V              D  ++ ++  ++G +               
Sbjct: 534 GHISIKASKDGILRQVVPEYECL-----KNDYELLWEMPNNEGYLQ-------------- 574

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKT 899
                            QK+IDQ+ S N   D       +   K+L      A+  G+KT
Sbjct: 575 ------------LVGLMQKFIDQSISANTNYDPTRFPGGKVPMKQLLKDLLTAYKFGVKT 622

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
            YY  +R      +  L       +      
Sbjct: 623 LYYQNTRDGAEDIQGDLHPAKADDDGCESGA 653


>gi|163738452|ref|ZP_02145867.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis BS107]
 gi|161388373|gb|EDQ12727.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis BS107]
          Length = 765

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 152/657 (23%), Positives = 260/657 (39%), Gaps = 85/657 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I +  +  + R+A  LA  E++ +    +FY  L  F ++ +      
Sbjct: 15  MKYRFKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV++
Sbjct: 191 FNMSVLVTDPFMEAVKADGSWELIF-----------------------------DGKVYQ 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL     N        D + L   + TAVR++DNV+D++   ++   +     
Sbjct: 278 ACLLGSINLARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    ++ +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +      +D                      ++++  ++  G+RN+   +IAPT TI+
Sbjct: 398 DAYLASGTMMD--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      +W +              
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWRDKFGDK--------- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P   ++  +  QKWID + S  +    + S      +Y Q
Sbjct: 487 -------ELPDYFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW +G K     R    T    S  +  D            +     G         
Sbjct: 540 AWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADISESGAAEVVYMSE 596


>gi|163742138|ref|ZP_02149526.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161384468|gb|EDQ08849.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter
           gallaeciensis 2.10]
          Length = 765

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 151/657 (22%), Positives = 260/657 (39%), Gaps = 85/657 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I +  +  + R+A  LA  E++ +    +FY  L  F ++ +      
Sbjct: 15  MKYRFKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + K+++
Sbjct: 191 FNMSVLVTDPFMEAVKADGSWELIF-----------------------------DGKIYQ 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL     N        D + L   + TAVR++DNV+D++   ++   +     
Sbjct: 278 ACLLGSINLARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    ++ +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +      +D                      ++++  ++  G+RN+   +IAPT TI+
Sbjct: 398 DAYLASGTMMD--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      +W +              
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWRDKFGDK--------- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P   ++  +  QKWID + S  +    + S      +Y Q
Sbjct: 487 -------ELPDYFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW +G K     R    T    S  +  D            +     G         
Sbjct: 540 AWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADISESGAAEVVYMSE 596


>gi|167947197|ref|ZP_02534271.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 438

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 225/376 (59%), Positives = 281/376 (74%), Gaps = 2/376 (0%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA-YENYERQADRGEIKVFRKISAV 543
           IPDLFMKRV +   WTL  P   +     +        Y   E +A RGEIKVFR + AV
Sbjct: 1   IPDLFMKRVAEEGDWTLVLPQRGARPARPHRWLSSRPSYTACEEKAARGEIKVFRSLKAV 60

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LWRKML ML+ETGHPWITFKDPCNIR   QH GVVHSSNLCTEITL+++  E AVCNLG
Sbjct: 61  DLWRKMLGMLYETGHPWITFKDPCNIRYTNQHAGVVHSSNLCTEITLHTNDSEIAVCNLG 120

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           S+NL AH   N  D  KL  T+ TA+R+LDNVID N +++ +A+ SN  HR +GLG++GF
Sbjct: 121 SVNLAAHVDENGLDIAKLERTVTTAMRMLDNVIDYNYYSVPQARHSNLRHRPVGLGILGF 180

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q AL+   I YAS +A+  AD SME +S++AI AS ELA ERG YSS++GSLW QGV PI
Sbjct: 181 QDALYKQRIGYASEQALTFADRSMEAVSYYAIQASSELAAERGRYSSYEGSLWSQGVLPI 240

Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           DS+  L + R   L ++++S L WD L+++VKT GMRNSN MAIAPTATI+NI GVSQSI
Sbjct: 241 DSLQQLKQARGDYLQIDQSSSLDWDALREKVKTQGMRNSNTMAIAPTATISNIVGVSQSI 300

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P+YQNL+VKSN+SG+FTVVN +LV++LK+  LWDE MI+DLKY+DGS+  IER+P +LK
Sbjct: 301 EPTYQNLFVKSNLSGEFTVVNPYLVHDLKREGLWDEVMINDLKYYDGSLAPIERVPAELK 360

Query: 843 KIHATAFEIDPMWLIE 858
            ++ATAFEIDP WL+E
Sbjct: 361 VLYATAFEIDPRWLVE 376


>gi|145633335|ref|ZP_01789066.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
 gi|144986181|gb|EDJ92771.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
          Length = 645

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 161/672 (23%), Positives = 268/672 (39%), Gaps = 57/672 (8%)

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322
             + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  ++
Sbjct: 4   YDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYL 63

Query: 323 RVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D L
Sbjct: 64  LVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDSL 123

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R LG+ I G      G IPF K       + +Q
Sbjct: 124 DSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQ 183

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +    T
Sbjct: 184 GGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGEIT 243

Query: 501 LFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
           LFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     TG
Sbjct: 244 LFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERASTG 299

Query: 558 HPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFAN 613
             +I   D CN  SP       V  SNLC EI L +   +      G I L         
Sbjct: 300 RIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNLG 359

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
              + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    + 
Sbjct: 360 KIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVR 419

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +  
Sbjct: 420 YSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLDS- 478

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                       W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P   ++ +K+
Sbjct: 479 ---LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIKA 535

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           +  G    V     N      + +  ++ D+  +DG +                      
Sbjct: 536 SKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH--------------------- 569

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
                     QK++DQA S N   D       +   K L      A+  GLKT YY  +R
Sbjct: 570 -----LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNTR 624

Query: 907 SATSVEKSTLKG 918
                 +  L  
Sbjct: 625 DGAEDVQEDLDD 636


>gi|260425806|ref|ZP_05779786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Citreicella sp. SE45]
 gi|260423746|gb|EEX16996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Citreicella sp. SE45]
          Length = 760

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 157/657 (23%), Positives = 263/657 (40%), Gaps = 85/657 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +GS I+   +  + R+A  LA  ET+ E     FY  L  F ++ +      
Sbjct: 15  MKYRFKEADGSPIDVTVEDSWRRIARSLASVETDAEGWEQRFYEALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARSVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVAGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAKA----DSARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L   D                             KV+R
Sbjct: 191 FNLSVLVTDAFMEAVKADGSWELVYGD-----------------------------KVYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVKARDLWNRIMRATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL              D  +L + + TAVR++DNV+D +   + +  +     
Sbjct: 278 ACLLGSINLARLVKQPFEAEAHLDEAELEALVATAVRMMDNVVDASRFPLPQQLEEAQNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +  + Y S EA    +  +  I+  +  ASVELA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMKGLRYGSKEAAAQTEAWLRLIARASYLASVELAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +      ++                      D+++  ++  G+RN+   +IAPT TI+
Sbjct: 398 EKYLATGNMLN--------------------MDDDVRDAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D T     +V+       +   M  DLK       
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGTRTEEEVVD-------YAVQMWRDLKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L +    A  +DP   +   +  QKWID + S  +    + S +    +Y Q
Sbjct: 485 -----DAELPEYFVNAQTLDPQAHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           A+  G K     R    T    S  +  +      P     ++   +   S      
Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSESAEKTPADTPELAEEAAGGDVIYMSEPLDRP 596


>gi|163793808|ref|ZP_02187782.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium
           BAL199]
 gi|159180919|gb|EDP65436.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium
           BAL199]
          Length = 768

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 158/649 (24%), Positives = 267/649 (41%), Gaps = 86/649 (13%)

Query: 299 QILYDRYFLHINGSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCST 355
           QI   +Y L + G  +E  PQ  + RVA  LA  E   ++ + A  FY  +  + F+ + 
Sbjct: 10  QIWDMKYRLRVEGEAVEASPQDSWRRVATALAEAEAPKDRARWAERFYEAMEGYRFLPAG 69

Query: 356 PTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
             L  +GT     L +CF+  T+PD + GIF +L+E A+  +  GG+G D++ +R  GA 
Sbjct: 70  RILAGAGTGRSVTLFNCFVMGTIPDSMGGIFESLKEAALTMQQGGGIGYDFSTLRPRGAP 129

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G    + G + F+ V +     +   G R+GA+ A L   H D+E F++ ++    D 
Sbjct: 130 VKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATLRCDHPDIEAFVEAKR----DP 185

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R    N +  I D FM+ V  +  W L                               E
Sbjct: 186 SRLRMFNLSVLITDPFMEAVKTDGDWDLVF-----------------------------E 216

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
              +R + A ALW +++   ++   P + F D  N R+   +   + ++N C E  L   
Sbjct: 217 GAAYRTVKARALWDRIMQTTYDVAEPGVIFIDRINQRNNLHYCETISATNPCGEQPLPPY 276

Query: 594 SEETAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                 C LGS+NL    A         D   LA  +  AVR++DNV+D++   +E    
Sbjct: 277 ----GACLLGSVNLATLIARPFEADAALDETALAEIVPLAVRMMDNVVDVSRFPLEAQAA 332

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R IGLG+ G   AL    + Y SPEAV   +  M  +  HA  AS++LA+E+G +
Sbjct: 333 EARGKRRIGLGVTGLADALIFCGLRYGSPEAVATTERWMSLLRRHAYRASIDLAREKGPF 392

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             F    +  G                     + R   ++L++ +   G+RN+   +IAP
Sbjct: 393 PLFDAKPYLAG--------------------ESIRELDEDLREAIAEHGIRNALVTSIAP 432

Query: 769 TATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T TI+     VS  ++P +   Y ++            L+ +  ++      +   L   
Sbjct: 433 TGTISLFADNVSSGLEPVFSFTYDRTV-----------LMPDGSKKTEEVSDLAYRLYR- 480

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
                 ++     L      A  + P   +   +  QK++D + S  +    +   +   
Sbjct: 481 -----ELKGPDAPLTDAFVHAQSLAPSDHVVMQAAVQKYVDSSISKTINCPEDIDFEAFK 535

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
            +YRQA+  G K     R    T    +T +    +  A P     ++T
Sbjct: 536 SVYRQAYESGCKGCTTYRPNDVTGAVLATRREEPEQTAAEPQGSAETAT 584


>gi|322421033|ref|YP_004200256.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
 gi|320127420|gb|ADW14980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacter sp. M18]
          Length = 565

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 155/624 (24%), Positives = 262/624 (41%), Gaps = 76/624 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNL 345
                   ++L  RY L    G  IE P+  F R+A  +A  E     +       F +L
Sbjct: 1   MELSENARKVLQARYLLKNEEGEVIESPEEMFRRLARSIAAVEKSYGADPGLWEERFLDL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           L+   F+ ++P + N+G    QL++CF+  V D + GIF  L+  A++ +  GG G  ++
Sbjct: 61  LTGLRFLPNSPAIMNAGKPAGQLAACFVLPVEDSMSGIFETLKNAALILQSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F+K+ N     + QGG R+GA    L   H D+ EF+ +
Sbjct: 121 RLRPRADLVRSTGGIASGPVSFMKIYNTATDIIKQGGARRGANMGILRVDHPDIVEFIRV 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K  G+      + N +  + DLFM+ ++++  + L +P                     
Sbjct: 181 KKGAGE----LANFNISVAVTDLFMEELSRDGSYDLVNPRS------------------- 217

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    KV  +  A  ++ +++   +ETG P + F D  N  +P   +G   S+N C
Sbjct: 218 --------GKVAGRARAKEVFDEIVASAWETGDPGMIFIDRINRDNPTPGIGSFESTNPC 269

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         C LGS+NL  +  + + D + L   +  AVR LD+ ID N + +  
Sbjct: 270 GEQPLLPY----EACVLGSLNLARYVGSGELDLESLGGDVALAVRFLDDTIDANRYPLPA 325

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +  +  +R IGLG+MG+   L  L IPY  P A  +A   M+FI   A +AS  LA+ER
Sbjct: 326 IEAMHKRNRKIGLGVMGWADLLIDLGIPYNDPRAFALAGSVMQFIRDRARNASAALAEER 385

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +F GS++D    P         +     +                           
Sbjct: 386 GVFPNFPGSVYDAPGMPRVRNATTTTIAPTGTL--------------------------- 418

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
                  A I   S  I+P +   Y +  + G+    N   +   K+   + E ++  +K
Sbjct: 419 -------ATIADCSSGIEPLFALAYRRLILEGELVETNRHFIEIAKREGFYSEELLEGVK 471

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
              G++   E +P+  + +  TA EI P   IE     Q++ D A S  + L  E + + 
Sbjct: 472 VT-GNLQGREEVPERYRALFRTALEIPPEDHIEMQRAFQRFTDNAVSKTVNLPEEATRED 530

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSA 908
           +  ++  A+    K     R    
Sbjct: 531 VARVFLLAYEKECKGVTLFRYGCR 554


>gi|119383702|ref|YP_914758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paracoccus denitrificans PD1222]
 gi|119373469|gb|ABL69062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paracoccus denitrificans PD1222]
          Length = 754

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 155/639 (24%), Positives = 255/639 (39%), Gaps = 84/639 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + RVA  LA  E +       FY  L  F F+ +   L  +GT     L +CF+ 
Sbjct: 30  SVEDSWRRVARDLARVEKDPALWEDRFYAALEDFKFLPAGRILAGAGTGREVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F++ ++    D  R    N +  + D FM+ V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIEAFIEAKQ----DSARLRMFNLSVLVTDAFMEAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV+  + A  LW +++   
Sbjct: 206 KADGPWDLQFG-----------------------------GKVYHTVRARDLWNRIMRAT 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N ++   +   V ++N C E  L         C LGS+NL      
Sbjct: 237 YDYAEPGVIFIDRINQQNNLNYAETVAATNPCGEQPLPPY----GACLLGSVNLARLVEA 292

Query: 614 NQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   + + L   +RTAVR++DNV+D +   + +        R IGLG+ G   AL 
Sbjct: 293 PFTAHARLNPEALDELVRTAVRMMDNVVDASKFPLPQQSAEAQAKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y + +AVE     M+ I+  A  ASV+LA+E+GA+  F    +    F       
Sbjct: 353 MLGLRYGAADAVEQTRVWMKAIARSAYLASVDLAREKGAFPLFDAKKYLASGFM------ 406

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                         R    +L++ V   G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 407 --------------RRMDADLREAVARHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+       +   M  DLK               L      
Sbjct: 453 YAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLKG-----------DAPLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  +   +  Q+W+D + S  +    + S +    +Y  AW  G K     R  
Sbjct: 495 AQTLAPLDHVAMQAAAQEWVDSSISKTINCPEDISFEDFKDVYLAAWDKGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             T    S  +  +    A    D    T  L  P++  
Sbjct: 555 EVTGSVLSVSEKTEEAPQADKGADVVYLTEPLDRPAALE 593


>gi|126733656|ref|ZP_01749403.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           CCS2]
 gi|126716522|gb|EBA13386.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           CCS2]
          Length = 760

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 154/658 (23%), Positives = 254/658 (38%), Gaps = 85/658 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I E     + R+A  LA  E +      +FY+ L  F ++ +      
Sbjct: 15  MKYRFKEADGTPIDETVADTWTRIAGALAAVEDDPTAWESKFYDALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVMGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  +  W L    E                             V+R
Sbjct: 191 FNMSVLITDPFMEAVKADGPWDLIFGGE-----------------------------VYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW  ++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVQARELWDAIMRSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+     +        D   L   + TAVR++DNV+D +   +E  +      
Sbjct: 278 ACLLGSINMARLVKDPFEDIAALDEAALTDLVATAVRMMDNVVDASRFPLEAQQAEAKAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S EA    D+ M  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSQEAAAQTDKWMHQIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                               ++   +   +    +++  +   G+RN+   +IAPT TI+
Sbjct: 398 --------------------EQFLASGAMQGMDADVRDAIAEHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   +  DLK       
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQLWRDLKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L      A  + P+  +   +  QKWID + S  +    + S      +Y  
Sbjct: 485 -----DAPLPDYFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDDFKEVYMA 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           AW  G K     R    T    S  +          V   +     + +        E
Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLSVSQEASPSEVPAQVRTEDEGAEVVYMSEPLDRPQE 597


>gi|51246679|ref|YP_066563.1| ribonucleoside-diphosphate reductase [Desulfotalea psychrophila
           LSv54]
 gi|50877716|emb|CAG37556.1| probable ribonucleoside-diphosphate reductase [Desulfotalea
           psychrophila LSv54]
          Length = 785

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 158/691 (22%), Positives = 281/691 (40%), Gaps = 85/691 (12%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN- 310
           Y  +     +             +     +        +         +L  RY+L  + 
Sbjct: 26  YMVFLSLNRKGYPANYFYLIQYKNDIYKEVIMAPDV-MEQVLTTTAETVLARRYYLKDDA 84

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFMCSTPTLFNSGT 363
           G+ +E  +A   RVA  +A ++   +           +F+ ++    F+ ++P L N+GT
Sbjct: 85  GNSLEDWKALAHRVAEAVAPEDATGKNEVTGIKQLRDDFFTMIYQLDFLPNSPCLMNAGT 144

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              QLS+CF+  V D + GIF A++  A++ K  GG G  ++ +R   A +  T+G + G
Sbjct: 145 EIGQLSACFVLPVEDSMDGIFTAIRNGALVHKTGGGTGYSFSRIRACNASVKSTHGVASG 204

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
            + F  V +     + QGGKR+GA    L   H D+  F+  +    +D+ + ++ N + 
Sbjct: 205 PLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDIMAFISAK----EDQDKFNNFNFSV 260

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            I DLFM  +  +  + L  P                              +V  +++AV
Sbjct: 261 AITDLFMAALEADKEYDLIEPST---------------------------GEVMGQLNAV 293

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            ++ K++ + +  G P + F D  N  +    +G   ++N C E  L         CNLG
Sbjct: 294 EVFAKIVDLAWHNGEPGVLFIDAANRDNTTPQLGDFEATNPCGEQWLLPY----ESCNLG 349

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           SINL     N++ DY +L   ++TA   LDNVID N   I +  +     R IGLG+MG 
Sbjct: 350 SINLGNFVKNDEVDYSRLGQIVKTATCFLDNVIDCNVFPIPEIGEMTLKTRKIGLGIMGL 409

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L  L IPY S E   +A E M+FI       S +LA+E+GA+ ++            
Sbjct: 410 HDLLIQLAIPYGSEEGRLLAAEVMQFIRDRCEEQSRKLAEEKGAFPAYDA---------- 459

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
             I L    R                          N+   +I PT T++ I   +   +
Sbjct: 460 -EINLYPARR--------------------------NAALTSIQPTGTVSMIADCASGCE 492

Query: 784 PSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P +  + +K  M GD   +VN       +++  + + ++  +    G++     IP+  +
Sbjct: 493 PYFSIVMMKHVMDGDRLLMVNKHFEKIAREQGFYSDDLMVKVAES-GTVVGHAEIPEKWQ 551

Query: 843 KIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTT 900
           +   TA +I P   I   +  Q   +D + S  + L +  + + + + Y   + +G K  
Sbjct: 552 EAFRTAQDISPEDHIRMQAILQNSGVDSSISKTINLPKTATREDVKYSYISGYKLGCKGL 611

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
              R  S      +T +       +  V++ 
Sbjct: 612 TVYRDGSRDDQVLNTTEQSRASEKSAMVSET 642


>gi|84516707|ref|ZP_01004066.1| ribonucleoside-diphosphate reductase, putative [Loktanella
           vestfoldensis SKA53]
 gi|84509743|gb|EAQ06201.1| ribonucleoside-diphosphate reductase, putative [Loktanella
           vestfoldensis SKA53]
          Length = 769

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 157/660 (23%), Positives = 259/660 (39%), Gaps = 88/660 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  + R+A  LA  E + +    +FY+ L+ F ++ +      
Sbjct: 15  MKYRFKQADGTPIDISVEDTWHRIAKSLAAVEADPQAWEPKFYDALADFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGASVLGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMAVMRCDHPDIEAFITAK----SDAARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM  V     W L                               + +V++
Sbjct: 191 FNMSVLITDPFMAAVKAGGDWDLLF-----------------------------DGQVYK 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW  ++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TLKARDLWDTIMQSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFDYDK-----LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+    ++   D  K     L   + TAVR++DNV+D +   +   +      
Sbjct: 278 ACLLGSINMARLVSDPFSDSAKLDANALTDLVATAVRMMDNVVDASRFPLPAQQHEAMNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S EA    D  M  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSEEAAAQTDAWMHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      +   +   D++++ ++T G+RN+   +IAPT TI+
Sbjct: 398 DKY--------------------LASGAMQQMDDDVREAIRTHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D T     +V+       +   M  DLK       
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGTKTEEEVVD-------YAVQMWRDLKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L      A  + P+  +   +  QKWID + S  +    + S      +Y  
Sbjct: 485 -----DAPLPDYFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDAFKEVYMA 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL---NAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R    T    S  +     L   N     DP  S  +           
Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLSVSEEKPQLLISENTPAGGDPEGSHGTTPGGEVIYMSE 599


>gi|114765474|ref|ZP_01444584.1| ribonucleoside-diphosphate reductase, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114542184|gb|EAU45215.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           HTCC2601]
          Length = 762

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 156/645 (24%), Positives = 262/645 (40%), Gaps = 85/645 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  + R+A  LA  E + E+    F+  L  F ++ +      
Sbjct: 15  MKYRFKEADGTPIDMSVEDSWRRIARSLASVEKDAERWEETFFEALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA +HG  
Sbjct: 75  AGTARSVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAIVHGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIAAK----SDSARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV+ 
Sbjct: 191 FNLSVLVTDPFMEAVKADGSWDLKF-----------------------------DGKVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVKARDLWNKIMKATYDYAEPGVIFIDRINEANNLNYVEQIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFDYDK-----LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL     +   D  +     L + + TAVR++DNV+D +   + + ++     
Sbjct: 278 ACLLGSINLARLVTDPFTDAAEIDDAALETLVATAVRMMDNVVDASRFPLPEQEEEAQNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +  + Y S EA    ++ +  I+  +  ASVELA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMKGLRYGSEEAAAQTEDWLHRIARASYLASVELAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                              +++++ ++T G+RN+   +IAPT TI+
Sbjct: 398 EKYLASGNM--------------------MNMDEDVREAIRTHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D T     +V+       +   M  DLK       
Sbjct: 438 LYAGNVSSGIEPVFAYAYKRKVLQKDGTRTEEEVVD-------YAVQMWRDLKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  +DP   +   +  QKWID + S  +    + S +    +Y Q
Sbjct: 485 -----DAELPDYFVNAQTLDPQDHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           A+  G K     R    T    S  +       AV       +  
Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEEKKAAPEAVATPAAEPNQP 584


>gi|221105132|ref|XP_002165620.1| PREDICTED: similar to ribonucleotide-diphosphate reductase large
           subunit, putative, partial [Hydra magnipapillata]
          Length = 416

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 208/392 (53%), Gaps = 12/392 (3%)

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             R+I A  LWR +L    ETG P+I +KD  NI+S Q+++G + SSNLC EI   S   
Sbjct: 1   YVRQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNLGTIRSSNLCAEIIQYSDEH 60

Query: 596 ETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
           ETAVCNL SI L      N     +++DKL    R AVR LD +ID N +  EK K+SN 
Sbjct: 61  ETAVCNLASICLPMFIETNNNVKIYNFDKLGKVCRVAVRNLDKIIDRNYYPTEKTKRSNL 120

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            HR +G+G  G     +++   +++  A E+  +  E I F  I  S ELA++ G YS+F
Sbjct: 121 RHRPMGIGAQGLADVYNIMGFGFSTHSAYELNKKIFETIYFACIDESKELAKKFGQYSTF 180

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           KGS   QG                          W  L   VK  G+RNS   A+ PTA+
Sbjct: 181 KGSPASQGQLQFHMW-------GFNEDQLLMGFDWKTLISEVKKYGLRNSLLTALMPTAS 233

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G S+ I+P   N++ +S ++G+F V+N  L+ +L   +LW++ M   +   +GS+
Sbjct: 234 TSQIMGNSECIEPYMSNIFKRSTLAGEFIVINKHLMKDLIHLNLWNDDMRKRIIIENGSV 293

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
            NIE IP+ LK ++ TAFE   M ++  ++ R  +IDQ+QSLNL++ EP    L     +
Sbjct: 294 QNIELIPEKLKNVYETAFETKQMHIVRQSADRGIFIDQSQSLNLFMAEPDFDVLTSALFE 353

Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922
           +  +G KT  YY RS  A +     +   D K
Sbjct: 354 SHDIGNKTGMYYYRSLPAINPISFGIDIEDIK 385


>gi|126463986|ref|YP_001045099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126105797|gb|ABN78327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 755

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 152/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + R+A  LA  E +       FY+ L  F F+ +      +GT     L +CF+ 
Sbjct: 30  SVEDTWRRIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD + GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV+R + A  LW +++   
Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +   + ++N C E  L         C LGS+NL    A 
Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292

Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              D       +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL 
Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+  F+   +            
Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                     + +     ++++  ++T G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 401 --------LASGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+   +  LW E M                    L      
Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  +   +  QKWID + S  +    +   ++   +Y  AW  G K     R  
Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945
             T    S  +         P          T  L  P++  
Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596


>gi|77465546|ref|YP_355049.1| ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1]
 gi|77389964|gb|ABA81148.1| Ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1]
          Length = 755

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 153/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + R+A  LA  E E       FY+ L  F F+ +      +GT     L +CF+ 
Sbjct: 30  SVEDTWRRIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD + GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV+R + A  LW +++   
Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +   + ++N C E  L         C LGS+NL    A 
Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292

Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              D       +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL 
Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+  F+   +            
Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                     + +     ++++  ++T G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 401 --------LGSGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+   +  LW E M                    L      
Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  +   +  QKWID + S  +    +   ++   +Y  AW  G K     R  
Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945
             T    S  +         P          T  L  P++  
Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596


>gi|221369551|ref|YP_002520647.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides
           KD131]
 gi|221162603|gb|ACM03574.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides
           KD131]
          Length = 755

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 151/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + R+A  LA  E +       FY+ L  F F+ +      +GT     L +CF+ 
Sbjct: 30  SVEDTWRRIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD + GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV+R + A  LW +++   
Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +   + ++N C E  L         C LGS+NL    A 
Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292

Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              D       +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL 
Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+  F+   +            
Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                     + +     ++++  +++ G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 401 --------LASGSLTHMDEDVRAAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+   +  LW E M                    L      
Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  +   +  QKWID + S  +    +   ++   +Y  AW  G K     R  
Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945
             T    S  +         P          T  L  P++  
Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596


>gi|56698026|ref|YP_168397.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi
           DSS-3]
 gi|56679763|gb|AAV96429.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi
           DSS-3]
          Length = 760

 Score =  344 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 154/657 (23%), Positives = 263/657 (40%), Gaps = 85/657 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I +  +  + R+A  LA  E + ++   EFY  L  F ++ +      
Sbjct: 15  MKYRFKQADGTPIDQTVEDSWRRIARDLARVEQDPDRWEREFYTALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV+ 
Sbjct: 191 FNMSVLVTDAFMEAVKADGSWELQF-----------------------------DGKVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL    +N   D      + L   + TAVR++DNV+D +   + +        
Sbjct: 278 ACLLGSVNLARLVSNPFEDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA +  ++ +  I+  A  ASVELA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + T R   +++++ ++T G+RN+   +IAPT TI+
Sbjct: 398 EKY--------------------LASGTMRAMDEDVREAIRTHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   M  D         
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRD--------- 481

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
             +     L      A  + P   +   +  QKWID + S  +    + S      +Y Q
Sbjct: 482 --KFADAPLPDYFVNAQTLAPADHVRMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW +G K     R    T    +  +  D            +    +   S      
Sbjct: 540 AWDLGCKGCTTYRPNDVTGSVLTVSESADKAPGESASAPHGTEGGDVIYMSEPLDRP 596


>gi|254467219|ref|ZP_05080630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium Y4I]
 gi|206688127|gb|EDZ48609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium Y4I]
          Length = 765

 Score =  344 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 150/657 (22%), Positives = 254/657 (38%), Gaps = 84/657 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  + R+A  LA  E + +    +FY  L  F ++ +      
Sbjct: 15  MKYRFKQADGAPIDVTVEDTWRRIARDLARAEKKPDAWEEKFYAALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTIPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEHFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV+ 
Sbjct: 191 FNMSVLVTDDFMEAVKADGSWELQF-----------------------------DGKVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   ++  + ++N C E  L        
Sbjct: 222 TVEARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+          +   D   +   + TAVR++DNV+D++   ++   +     
Sbjct: 278 ACLLGSINMARLVANPFEKDAHLDQAAMQELVATAVRMMDNVVDVSKFPLDAQAEEAKNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    DE +  I+  A  ASVELA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLEYGSDEAARQTDEWLHAIARAAYLASVELAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +      ++                      ++++  ++  G+RN+   +IAPT TI+
Sbjct: 398 EKYLNSGNMLN--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +                 L++     E     + Y      
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKV---------------LQKDGSRTEE--EVVDYAVQMYR 480

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L      A  + P   ++  +  QKWID + S  +    + S      +Y Q
Sbjct: 481 EKFGADAKLPDYFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQ 540

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R    T    +  +  D            S     G      S+ 
Sbjct: 541 AWDQGCKGCTTYRPNDVTGSVLTVSESADTAPGETAKAPHESDMGENGAEVVYMSEP 597


>gi|9629309|ref|NP_044509.1| ribonucleotide reductase subunit 1 [Human herpesvirus 2]
 gi|82013519|sp|P89462|RIR1_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            Short=R1; AltName: Full=ICP10; AltName:
            Full=Ribonucleotide reductase 136 kDa subunit; AltName:
            Full=Ribonucleotide reductase large subunit
 gi|1869862|emb|CAB06725.1| ribonucleotide reductase large subunit [Human herpesvirus 2]
          Length = 1142

 Score =  344 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 291/725 (40%), Gaps = 65/725 (8%)

Query: 222  RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
            R L   +   + T      +     E+   +     R  E   +  +L +++  +D    
Sbjct: 430  RILGVLVHLRIRTREASFEEWMRSKEVDLDFGLT-ERLREHEAQLMILAQALNPYD---- 484

Query: 282  ANDLKYERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVA--------MGLAL 330
               L +         GLQ        Y     G  +E     + R+A         G+  
Sbjct: 485  --CLIHSTPNTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRH 542

Query: 331  KETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF-- 384
                ++    E    F++ L     + STP + N GTR+   SSC+L             
Sbjct: 543  IALGRQGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLR 602

Query: 385  GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
                  + +   +GG+G                      ++P LKV +    A N+   R
Sbjct: 603  AITGNVSAILARNGGIGLCMQAFNDASPGTA-------SIMPALKVLDSLVAAHNKQSTR 655

Query: 445  KGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNA 497
                C YLE WH DV   L ++     ++ +R  ++ +A W+PDLF KR+       +N 
Sbjct: 656  PTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNV 715

Query: 498  GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
             W+LF  D    L D +G+EFE  YE+ E             I    L   ++     TG
Sbjct: 716  TWSLFDRDTSMSLADFHGEEFEKLYEHLEAMGFG------ETIPIQDLAYAIVRSAATTG 769

Query: 558  HPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
             P+I FKD  N        G  +  SNLCTEI   +S   + VCNLGS+NL    +   F
Sbjct: 770  SPFIMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTF 829

Query: 617  DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            D+ +L   ++  V +++ +ID       +  + N   R++G+G+ G  +A   + +   S
Sbjct: 830  DFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLES 889

Query: 677  PEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
             E  ++     E +   A+  S  L  +    +S FK S++  G F           R  
Sbjct: 890  AEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHW--------ERFS 941

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             A  R     W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K   
Sbjct: 942  NASPRYEGE-WEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTR 1000

Query: 796  SGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEI 851
             G+    N+ L+ EL++          +  L+    S+   +  + P    +   TAF+ 
Sbjct: 1001 DGETLRPNTLLLKELERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDY 1060

Query: 852  DPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRS 905
            D   LI+  + R  ++D +QS+ LY+ E          L  +   A+  GLKT  YY + 
Sbjct: 1061 DQELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKV 1120

Query: 906  RSATS 910
            R AT+
Sbjct: 1121 RKATN 1125


>gi|254476564|ref|ZP_05089950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria sp. R11]
 gi|214030807|gb|EEB71642.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria sp. R11]
          Length = 766

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 154/657 (23%), Positives = 255/657 (38%), Gaps = 84/657 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I +  +  + R+A  LA  E +++     F+N L  F ++ +      
Sbjct: 15  MKYRFKQADGTPIDQTVEDSWRRIARDLARAEKDQDAWEETFFNALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV++
Sbjct: 191 FNMSVLVTDPFMEAVKADGSWELIF-----------------------------DGKVYQ 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL     N        D + L   + TAVR++DNV+D++   +E   +     
Sbjct: 278 ACLLGSINLARLVKNPFEKESELDPEGLKELVATAVRMMDNVVDVSKFPLEAQAQEAQNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    +E +  I+  A  ASVELA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTEEWLHAIARAAYLASVELAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                              ++++  ++  G+RN+   +IAPT TI+
Sbjct: 398 EAYLASGNM--------------------MNMDEDVRDAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +                 L++     E     + Y      
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKV---------------LQKDGSRTEE--EVVDYAVQMYR 480

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P   ++  +  QKWID + S  +    + S      +Y Q
Sbjct: 481 EKFGADAELPDYFVNAQTLTPAEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQ 540

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW +G K     R    T    S  +  D            +     G         
Sbjct: 541 AWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADVSETGAAEVVYMSE 597


>gi|110681184|ref|YP_684191.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh
           114]
 gi|109457300|gb|ABG33505.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh
           114]
          Length = 832

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 154/635 (24%), Positives = 257/635 (40%), Gaps = 85/635 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ ++   +  + R+A  LA  E   E    +FY  L  F ++ +      
Sbjct: 15  MKYRFKAADGAPLDVTVEDTWRRIARDLARVEKTPEVWEEKFYAALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  +  W L                               + KV+R
Sbjct: 191 FNMSVLITDPFMEAVKADGPWDLVF-----------------------------DGKVYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVQARDLWNRIMQATYDYAEPGVIFIDRINQANNLSYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL    +N   D        L   + TAVR++DNV+D +   +E   +     
Sbjct: 278 ACLLGSINLARLVSNPFEDTAALDEAALDDLVATAVRMMDNVVDASKFPLEAQAREAQAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S EA    D  +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMMGLRYGSDEAARQTDRWLHSIARAAYLASVDLAREKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + T +   ++++  V+  G+RN+   +IAPT TI+
Sbjct: 398 DKY--------------------LASGTMQAMDEDVRDAVREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      LW E              
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQLWREKFGDK--------- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P+  ++  +  QKW+D + S  +    +        +Y +
Sbjct: 487 -------ELPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYME 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           AW  G K     R  + T    S  +    K +A 
Sbjct: 540 AWDSGCKGCTTYRPNAVTGSVLSVSEEKPSKQDAD 574


>gi|13358415|ref|NP_078756.1| Ribonucleotide reductase large subunit [Lymphocystis disease virus
           1]
          Length = 547

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 156/587 (26%), Positives = 244/587 (41%), Gaps = 92/587 (15%)

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            E    + Y   +   F+ S+P L  S +      +CF+  V +++  I     E   L+
Sbjct: 37  DEILETKLYLYATKEWFIYSSPIL--SDSDDGLPIACFVMDVQNNIKDIIQHSVETKWLS 94

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              GG    W  +          +  S G IPFL   +   +A  QG  RKG+  AYL+ 
Sbjct: 95  INGGGCAGYWGQL-------KSPSDTSCGPIPFLHTIDADVLAYKQGSTRKGSYAAYLDI 147

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF+++R  TGD  R+  +++    + D FM  V QN  W L  P          
Sbjct: 148 SHPDILEFINMRTPTGDLNRKNLNLHHGVNLTDAFMIAVEQNLNWNLIEPHTNQ------ 201

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-- 572
                                +   + AV LWR +L   F TG P++ F D  N      
Sbjct: 202 ---------------------IKETVPAVQLWRLLLETRFRTGEPYLNFIDTANRALHPG 240

Query: 573 -QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
            +     + SSNLC EI L S  + TAVC L S+NL  +      D       +   +++
Sbjct: 241 LKAKNLKIKSSNLCNEIHLASDEQRTAVCCLASLNLEKYEEWCDTD------LVECCIKM 294

Query: 632 LDNVIDINCHTIEKA----KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           L+NV+D               S    R+IGLG  G+   L    IP+ SP+A+ +     
Sbjct: 295 LNNVLDYFIFKAPIELSKAVYSATCERSIGLGATGWAYYLMKNDIPFDSPKALFLTKLIF 354

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
             I   A+  +  LAQ  G                                         
Sbjct: 355 GNIKIKAVKTTCLLAQRFGPAP-------------------------------------- 376

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
                +K   +RN++ +AIAP +  + I   S SI+P   N YV    +G   ++N +L 
Sbjct: 377 ----DLKAYNVRNAHLLAIAPNSNTSCILNTSPSIEPIAGNAYVHKTRAGTHLIINPYLK 432

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            +L+  +   E   + +   DGS+ ++  +  + K +  TA+EI+ + L+E A+ RQK+I
Sbjct: 433 QKLRNYNQDTEETWNSIILKDGSVQHLTFLSHEEKAVFKTAYEINALVLVEQAAVRQKYI 492

Query: 868 DQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
            Q QSLNL+    + +K L  ++  AW +G K  YYLR+ ++ S E 
Sbjct: 493 CQGQSLNLFFPLNTQRKLLHTVHFNAWKLGCKGLYYLRTSASKSSEN 539


>gi|255264072|ref|ZP_05343414.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thalassiobium sp. R2A62]
 gi|255106407|gb|EET49081.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thalassiobium sp. R2A62]
          Length = 757

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 151/643 (23%), Positives = 258/643 (40%), Gaps = 86/643 (13%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I +  +  + R+A  LA  E        +FYN L  F ++ +      
Sbjct: 15  MKYRFKDADGTPIDKTVEDTWTRIATSLASVEKTPSDWGEKFYNALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT+    L +CF+  TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTKRSVTLFNCFVMGTVPDDMGGIFDHLREAALTMQQGGGIGYDFSTIRPKGAAVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + +V +
Sbjct: 191 FNVSVLVTDPFMEAVKADQPWDLVF-----------------------------KGQVCK 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + AV LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQAVDLWNKIMQSTYDYAEPGVIFIDRINKANNLGYVEEIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFDYDKLAST-----IRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+     +   D   L        + TAVR++DNV+D +   ++  +      
Sbjct: 278 ACLLGSINMSRIVTDPFTDAAALDEAAMIDLVATAVRMMDNVVDASRFPLDAQRAEAQAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S +A    ++ M  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSEDAARQTEQWMHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      +       D+++  ++T G+RN+   +IAPT TI+
Sbjct: 398 DKY--------------------LQSDAMMAMDDDVRDAIRTHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +               K     +E ++         I 
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQ--------------KDGTRTEEEVVDYAVKLYRDIH 483

Query: 833 NIE-RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
             +  +PD        A  + P+  +   +  QKWID + S  +    + S +    +Y 
Sbjct: 484 GADAELPDH----FVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFEDFKEVYM 539

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           +AW  G K     R    T    S  +     + A        
Sbjct: 540 EAWDTGCKGCTTYRPNDVTGSVLSVSEDKPAPVVAQSDEADQD 582


>gi|260432613|ref|ZP_05786584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416441|gb|EEX09700.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 760

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 155/640 (24%), Positives = 259/640 (40%), Gaps = 86/640 (13%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I +  +  + R+A  LA  E +      +FY  L  F ++ +      
Sbjct: 15  MKYRFKKADGTPIDQTVEDTWRRIARDLARVEKDPAHWEQKFYEALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA +HG  
Sbjct: 75  AGTARQVTLFNCFVMGTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVHGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +A W L                               + KV+ 
Sbjct: 191 FNMSVLVTDAFMEAVKADASWDLVF-----------------------------DGKVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINQANNLSYAETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL    +    D        L   + TAVR++DNV+D +   + +        
Sbjct: 278 ACLLGSINLARLVSAPFEDAAQLDEAALQELVATAVRMMDNVVDASKFPLPQQAAEAQAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    +  +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + T +   D++++ ++  G+RN+   +IAPT TI+
Sbjct: 398 EKY--------------------LASGTMQQMDDDVREAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   M  D     G + 
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRD---KFGDV- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P   ++  +  QKWID + S  +    + S      +Y Q
Sbjct: 487 -------ELPDYFVNAQTLTPAEHVKMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           AW  G K     R    T     T+   D K+       P
Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVL-TVSESDDKVPGESADAP 578


>gi|294676157|ref|YP_003576772.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus
           SB 1003]
 gi|294474977|gb|ADE84365.1| ribonucleoside-diphosphate reductase NrdJ-1
           (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB
           1003]
          Length = 755

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 150/639 (23%), Positives = 257/639 (40%), Gaps = 84/639 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + RVA  LA  E +      +FY  L  F F+ +   L  +GT     L +CF+ 
Sbjct: 30  SVEDSWRRVARDLASVEADPAHWEPKFYAALEDFKFLPAGRILAGAGTGRAVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAAVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F+  ++    D  R    N +  I D FM+ V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIEAFITAKQ----DSARLRMFNLSVLITDAFMEAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                               + KV+  ++A  LW K++   
Sbjct: 206 KADGPWELVF-----------------------------DGKVYHTLNARDLWNKIMRAT 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---- 609
           ++   P + F D  N  +   ++  + ++N C E  L         C LGS+NL      
Sbjct: 237 YDFAEPGVIFIDRINAMNNLAYLEQIAATNPCGEQPLPPY----GACLLGSVNLARLVTA 292

Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + D   L   +RT+VR++DNV+D +   + + +      R IGLG+ G   AL 
Sbjct: 293 PFTDQARLDLAALDELVRTSVRMMDNVVDASRFPLPQQQAEAANKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y   +A    +  M+ I+  A  ASV+LA+E+GA+  F    +      +     
Sbjct: 353 MLGLRYGDDKAAAQTEAWMKAIARAAYLASVDLAREKGAFPLFDAEKYLSSGNMLQ---- 408

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                             +++++ + T G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 409 ----------------MDEDVRQAIATHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+   +  LW +          G +         L      
Sbjct: 453 YAYTRKVLQKDGSRTEEEVVDYAVK--LWRDM--------KGDVA--------LPAYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + PM  ++  +  QKWID + S  +    + S      +Y  A+  G K     R  
Sbjct: 495 AQTLAPMDHVKMQAAAQKWIDSSISKTINCPVDISFDDFKDVYMAAFESGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             T    +  +  +         +    T  L  P+S  
Sbjct: 555 DVTGSVLTVSEKSEKTPETDKGAEVVYLTEPLDRPASLE 593


>gi|149201158|ref|ZP_01878133.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           TM1035]
 gi|149145491|gb|EDM33517.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp.
           TM1035]
          Length = 762

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 157/662 (23%), Positives = 262/662 (39%), Gaps = 84/662 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QI   +Y      +     +  + R+A  LA+ E E       FY+ L  F F+ +    
Sbjct: 15  QIWNMKYRFRNGDAGDASVEDSWRRIARALAVAEAEPALWEERFYHALEDFKFLPAGRIT 74

Query: 359 FNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             +GT     L +CF+  TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G
Sbjct: 75  AGAGTARKVTLFNCFVMGTVPDDMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAEVKG 134

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +  + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R 
Sbjct: 135 VSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPARL 190

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +  I D FM+ V  +  W L                                 KV
Sbjct: 191 RMFNLSVLITDAFMEAVKADGPWDLQFG-----------------------------GKV 221

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           +  + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L      
Sbjct: 222 YHTVQARDLWNRIMQATYDYAEPGVIFIDRINAANNLAYCETIAATNPCGEQPLPPY--- 278

Query: 597 TAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              C LGSINL    A         D   L   +R AVR++DNV+D++   +        
Sbjct: 279 -GACLLGSINLARLVAEPFAAGARVDEAALDDLVRVAVRMMDNVVDVSGFPLPAQAAEAQ 337

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+ G   AL ++ + Y S  AV+  +  +  I+  A  ASV+LA+E+GA+  F
Sbjct: 338 AKRRIGLGVTGLADALLMVGLRYGSDAAVQQTEAWLHAIARAAYLASVDLAREKGAFPLF 397

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                                RD    + T +    +++  V   G+RN+   +IAPT T
Sbjct: 398 --------------------DRDAYLASGTMQTMDADVRAAVAEHGIRNALLTSIAPTGT 437

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+   G  S  I+P +   Y +  +  D +     +++      +W + M          
Sbjct: 438 ISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVID--YAVQMWRDRMGD-------- 487

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
                 +P+        A  + P   ++  +  QKW+D + S  +    + S +    +Y
Sbjct: 488 ----APLPEH----FVNAQTLPPEDHVKMQAAAQKWVDSSISKTINCPEDISFEAFKNVY 539

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            QAW +G K     R  + T    S  +  D          P +    + +        E
Sbjct: 540 LQAWDLGCKGCTTYRPNAVTGSVLSVSETTDKAPGETRGDVPATGGEVVYMSEPLDRPKE 599

Query: 950 CE 951
            E
Sbjct: 600 LE 601


>gi|332561218|ref|ZP_08415536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides WS8N]
 gi|332275016|gb|EGJ20332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sphaeroides WS8N]
          Length = 755

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 152/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + R+A  LA  E E       FY+ L  F F+ +      +G+     L +CF+ 
Sbjct: 30  SVEDTWRRIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGSGRTVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            TVPD + GIF AL+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F++ +K    D  R    N +  + D FM+ V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV+R + A  LW +++   
Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +   + ++N C E  L         C LGS+NL    A 
Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292

Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
              D       +L   +R AVR++DNV+D +   + +  +     R IGLG+ G   AL 
Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           ++ + Y S EA    +  M+ I+  A  AS +LA+E+GA+  F+   +            
Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                     + +     ++++  ++T G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 401 --------LGSGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+   +  LW E M                    L      
Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  +   +  QKWID + S  +    +   ++   +Y  AW  G K     R  
Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945
             T    S  +         P          T  L  P++  
Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596


>gi|302391884|ref|YP_003827704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetohalobium arabaticum DSM 5501]
 gi|302203961|gb|ADL12639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acetohalobium arabaticum DSM 5501]
          Length = 749

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 169/654 (25%), Positives = 285/654 (43%), Gaps = 87/654 (13%)

Query: 300 ILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAVEFY---NLLSSFHFMCST 355
           +L DRY         +E P+  F+RVA  +A  E ++EK+        NL++ F F+ ++
Sbjct: 12  LLEDRYLKRNEKREIVETPEELFIRVAENIAAAEEDEEKQEYYEEEFYNLMTDFKFLPNS 71

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           PTL N+GT   QL++CF+  V D + GIF A++  A++ K  GG G  ++ +R     + 
Sbjct: 72  PTLMNAGTELQQLAACFVLPVEDSMEGIFTAVRNAALIHKSGGGTGFAFSRLRPKDDVVK 131

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            T G S G + F+KV N     V QGGKR+GA    L   H D+ +F+  +    D  + 
Sbjct: 132 STGGVSSGPLSFMKVFNSATNTVKQGGKRRGANMGMLRVDHPDILDFIHAKGELNDKNQE 191

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG------KEFEIAYENYE--R 527
            +D    + + D ++     +     +    + D    +        EF  A +N E   
Sbjct: 192 LYDEFKES-LEDTYLAPEVIDKKLKQYKQKLLDDQFSNFNLSVGVTDEFMEAVKNDENYE 250

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +    +V  ++ A  ++  ++   ++ G P + F D  N ++P  ++G + ++N C E
Sbjct: 251 LINPRTGQVVGELDARKVFNLIVKYAWKNGEPGLVFLDEINHKNPVPNLGEIEATNPCGE 310

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
             L  +      CNLGSINL     +   D+++L  TI  AVR LDNVID+N + ++K +
Sbjct: 311 QPLLPN----EACNLGSINLSKFVDDGTVDWEELKETIDLAVRFLDNVIDMNNYPLDKIE 366

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R IGLG+MGF   L  L I Y S EAVE+A + M+FI+ HA   S +LA+E+GA
Sbjct: 367 EQVMKARKIGLGVMGFHEMLIKLGIAYNSDEAVEMAKKVMKFINEHAHQYSQKLAEEKGA 426

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           + +++ S +                                          RN+    IA
Sbjct: 427 FPAWEESKYKTPK--------------------------------------RNATLTTIA 448

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ + G S  I+P +   Y  ++  G                              
Sbjct: 449 PTGSISFLAGTSGGIEPFFDFSYTHTDGDG------------------------------ 478

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
           + S    +   +  +++  T  +I P W I+  +  Q ++D A S  + L    + + + 
Sbjct: 479 NTSRFEYDFTSEAEEEVLVTTMDIAPEWHIKIQAAFQNYVDNAVSKTINLPNTATKEDIR 538

Query: 887 FIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
             Y  A+ +  K     R  S  + V KS+    +  L    +        + G
Sbjct: 539 EAYILAYELNCKGLTVYRDGSRESQVLKSSDDKKEETLRTDKIYPRTRPLIADG 592


>gi|254487728|ref|ZP_05100933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. GAI101]
 gi|214044597|gb|EEB85235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. GAI101]
          Length = 760

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 156/643 (24%), Positives = 252/643 (39%), Gaps = 84/643 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + R+A  LA  E   E     F+  L  F F+ +      SGT     L +CF+ 
Sbjct: 30  TVEDTWRRIARDLAQTEDAPEVWEETFFEALEDFKFLPAGRITAGSGTARRVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G +  + G + F+ V + 
Sbjct: 90  GTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVLGVSADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H DVE+F+  +     D  R    N +  I D FM  V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRMFNMSVLITDPFMDAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L                                 KV+R + A  LW +++   
Sbjct: 206 KADQSWDLQFG-----------------------------GKVYRTVQARDLWNRIMKAT 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--- 610
           +E   P + F D  N  +   +   + ++N C E  L         C LGSIN+      
Sbjct: 237 YEFAEPGVIFIDRINAANNLSYCETIAATNPCGEQPLPPY----GACLLGSINMARMVAD 292

Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   D   L   + TAVR++DNV+D++   +E  K      R IGLG+ G   AL 
Sbjct: 293 PFDKTAHLDVVALDKLVATAVRMMDNVVDVSKFPLEAQKAEAKAKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           ++ + Y S EA    +  ++ I+  A  ASV+LA+E+GA+  F    +            
Sbjct: 353 MVGLRYGSDEAAAQTEAWLKAIARAAYLASVDLAKEKGAFPLFDADAY------------ 400

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                     + T +   ++++  +K  G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 401 --------LASGTMQQMDEDVRSEIKEHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+       +   M  DLK               L      
Sbjct: 453 YAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLKG-----------DAPLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  ++  +  QKW+D + S  +    + S      +Y  AW  G K     R  
Sbjct: 495 AQTLAPLDHVKMQAAAQKWVDSSISKTINCPEDISFDAFKDVYMAAWDQGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
             T    S  +  D     V      S    +   S      E
Sbjct: 555 DVTGSVLSVSETTDNAPGEVAPEPMPSEGGEVVYMSEPLDRPE 597


>gi|126737397|ref|ZP_01753132.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           SK209-2-6]
 gi|126721982|gb|EBA18685.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           SK209-2-6]
          Length = 765

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 155/657 (23%), Positives = 261/657 (39%), Gaps = 84/657 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  + R+A  LA  E + E    +FY  L  F ++ +      
Sbjct: 15  MKYRFKQADGTPIDVTVEDSWRRIARDLARAEQDPEAWEGKFYEALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                                 KV+ 
Sbjct: 191 FNMSVLVTDDFMEAVKADGSWELQFG-----------------------------GKVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVEARDLWNKIMQATYDFAEPGVIFIDRINKANNLSYVEDICATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+    +N        + + +   + TAVR++DNV+D++   +E   +     
Sbjct: 278 ACLLGSINMARLVSNPFEKNAGLNQEAMQELVATAVRMMDNVVDVSKFPLEAQAQEAQNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    DE +  I+  A  ASVELA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLEYGSDEAARQTDEWLHGIARAAYLASVELAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +      ++                      +++++ ++T G+RN+   +IAPT TI+
Sbjct: 398 DAYLASGNMLN--------------------MDEDVREAIRTHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +                 L++     E     + Y      
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKV---------------LQKDGSRTEE--EVVDYAVQMYR 480

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L      A  + P   ++  +  QKWID + S  +    + S      +Y Q
Sbjct: 481 EKFGADAKLPGFFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQ 540

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R    T    +  +  D           +S + + G      S+ 
Sbjct: 541 AWDQGCKGCTTYRPNDVTGSVLTVSENADTAPGETAQAPHDSGSDANGAEVVYMSEP 597


>gi|254511074|ref|ZP_05123141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium KLH11]
 gi|221534785|gb|EEE37773.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium KLH11]
          Length = 760

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 148/657 (22%), Positives = 253/657 (38%), Gaps = 85/657 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I +  +  + R+A  LA  E +      +FY  L  F ++ +      
Sbjct: 15  MKYRFKQADGTPIDQTVEDSWRRIARDLARVEDDPAHWEEKFYAALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV++
Sbjct: 191 FNMSVLVTDPFMEAVKADGPWELVF-----------------------------DGKVYQ 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL              D   L   + TAVR++DNV+D +   + + +      
Sbjct: 278 ACLLGSVNLARLVAEPFEDAAHLDEAALQELVATAVRMMDNVVDASKFPLAEQEAEAQDK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    +  +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFAA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +      +                       ++++  ++  G+RN+   +IAPT TI+
Sbjct: 398 EKYLASGTMLQ--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      +W +              
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWRDKFADK--------- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P   ++  +  QKWID + S  +    + S      +Y Q
Sbjct: 487 -------ELPDYFVNAQTLSPSDHVKMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R    T    +  +  D                 +   S      
Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLTVSESADTAPGESADAPQEIDGGDVIYMSEPLDRP 596


>gi|1710385|sp|P09853|RIR1_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            AltName: Full=Ribonucleotide reductase 136 kDa subunit;
            AltName: Full=Ribonucleotide reductase large subunit
 gi|330199|gb|AAA45806.1| ribonucleotide reductase large subunit [Human herpesvirus 2]
          Length = 1144

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 290/725 (40%), Gaps = 65/725 (8%)

Query: 222  RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
            R L   +   + T      +     E+   +     R  E   +  +L +++  +D    
Sbjct: 432  RILGILVHLRIRTREASFEEWMRSKEVDLDFGLT-ERLREHEAQLMILAQALNPYD---- 486

Query: 282  ANDLKYERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVA--------MGLAL 330
               L +         GLQ        Y     G  +E     + R+A         G+  
Sbjct: 487  --CLIHSTPNTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRH 544

Query: 331  KETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF-- 384
                ++    E    F++ L     + STP + N GTR+   SSC+L             
Sbjct: 545  IALGRQGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLR 604

Query: 385  GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
                  + +   +GG+G                      ++P LKV +    A N+   R
Sbjct: 605  AITGNVSAILARNGGIGLCMQAFNDASPGTA-------SIMPALKVLDSLVAAHNKQSTR 657

Query: 445  KGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNA 497
                C YLE WH DV   L ++     ++ +R  ++ +A W+PDLF KR+       +N 
Sbjct: 658  PTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNV 717

Query: 498  GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
             W+LF  D    L D +G+EFE  YE+ E             I    L   ++     TG
Sbjct: 718  TWSLFDRDTSMSLADFHGEEFEKLYEHLEAMGFG------ETIPIQDLAYAIVRSAATTG 771

Query: 558  HPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
             P+I FKD  N        G  +  SNLCTEI   SS   + VCNLGS+NL    +   F
Sbjct: 772  SPFIMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCVSRRTF 831

Query: 617  DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            D+  L   ++  V +++ +ID       +  + +   R++G+G+ G  +A   + +   S
Sbjct: 832  DFGMLRDAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLES 891

Query: 677  PEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
             E  ++     E +   A+  S  L  +    +S FK S++  G F           R  
Sbjct: 892  AEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHW--------ERFS 943

Query: 736  LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             A  R     W+ L++ +   G+RNS  +A+ PTA  A I  VS+   P + NL+ K   
Sbjct: 944  NASPRYEGE-WEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTR 1002

Query: 796  SGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEI 851
             G+    N+ L+ EL++          +  L+    S+   +  + P    +   TAF+ 
Sbjct: 1003 DGETLRPNTLLLKELERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDY 1062

Query: 852  DPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRS 905
            D   LI+  + R  ++D +QS+ LY+ E          L  +   A+  GLKT  YY + 
Sbjct: 1063 DQELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKV 1122

Query: 906  RSATS 910
            R AT+
Sbjct: 1123 RKATN 1127


>gi|290766060|gb|ADD60038.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
          Length = 1137

 Score =  341 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%)

Query: 274  MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324
             +  LV LA  L +               GLQ        Y     G  +E     + R+
Sbjct: 464  HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523

Query: 325  A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            A         G+      +E    E    F++ L     + STP + N GTR+   SSC+
Sbjct: 524  AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583

Query: 373  LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
            L                   + +   +GG+G                   +  V+P LKV
Sbjct: 584  LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636

Query: 431  ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489
             +    A N+   R    C YLE WH DV   L ++     ++ +R  ++ +A W+PDLF
Sbjct: 637  LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696

Query: 490  MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             KR+       +N  WTLF  D    L D +G+EFE  Y++ E            +I   
Sbjct: 697  FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602
             L   ++     TG P++ FKD  N        G  +  SNLCTEI   +S   + VCNL
Sbjct: 751  ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810

Query: 603  GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            GS+NL    +   FD+ +L   ++  V +++ +ID       +  + N   R++G+G+ G
Sbjct: 811  GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870

Query: 663  FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721
              +A   L +   S E  ++     E +   A+  S  L  +    ++ FK S++  G F
Sbjct: 871  LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930

Query: 722  PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                     + R            W+ L++ +   G+RNS  +A+ PTA  A I  VS+ 
Sbjct: 931  ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981

Query: 782  IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837
              P + NL+ K    G+    N+ L+ EL++         ++  L     S+   +  + 
Sbjct: 982  FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041

Query: 838  PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892
            P    +   TAF+ D   LI+  + R  ++D +QS+ LY+ E          L  +   A
Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101

Query: 893  WLMGLKT-TYYLRSRSATS 910
            +  GLKT  YY + R AT+
Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120


>gi|114318827|gb|ABI63501.1| UL39 [Human herpesvirus 1]
 gi|290766138|gb|ADD60115.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
          Length = 1137

 Score =  341 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%)

Query: 274  MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324
             +  LV LA  L +               GLQ        Y     G  +E     + R+
Sbjct: 464  HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523

Query: 325  A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            A         G+      +E    E    F++ L     + STP + N GTR+   SSC+
Sbjct: 524  AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583

Query: 373  LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
            L                   + +   +GG+G                   +  V+P LKV
Sbjct: 584  LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636

Query: 431  ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489
             +    A N+   R    C YLE WH DV   L ++     ++ +R  ++ +A W+PDLF
Sbjct: 637  LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696

Query: 490  MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             KR+       +N  WTLF  D    L D +G+EFE  Y++ E            +I   
Sbjct: 697  FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602
             L   ++     TG P++ FKD  N        G  +  SNLCTEI   +S   + VCNL
Sbjct: 751  ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810

Query: 603  GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            GS+NL    +   FD+ +L   ++  V +++ +ID       +  + N   R++G+G+ G
Sbjct: 811  GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870

Query: 663  FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721
              +A   L +   S E  ++     E +   A+  S  L  +    ++ FK S++  G F
Sbjct: 871  LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930

Query: 722  PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                     + R            W+ L++ +   G+RNS  +A+ PTA  A I  VS+ 
Sbjct: 931  ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981

Query: 782  IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837
              P + NL+ K    G+    N+ L+ EL++         ++  L     S+   +  + 
Sbjct: 982  FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041

Query: 838  PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892
            P    +   TAF+ D   LI+  + R  ++D +QS+ LY+ E          L  +   A
Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101

Query: 893  WLMGLKT-TYYLRSRSATS 910
            +  GLKT  YY + R AT+
Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120


>gi|330196|gb|AAA45805.1| ribonucleotide reductase 1 [Human herpesvirus 1]
          Length = 1137

 Score =  341 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%)

Query: 274  MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324
             +  LV LA  L +               GLQ        Y     G  +E     + R+
Sbjct: 464  HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523

Query: 325  A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            A         G+      +E    E    F++ L     + STP + N GTR+   SSC+
Sbjct: 524  AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583

Query: 373  LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
            L                   + +   +GG+G                   +  V+P LKV
Sbjct: 584  LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636

Query: 431  ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489
             +    A N+   R    C YLE WH DV   L ++     ++ +R  ++ +A W+PDLF
Sbjct: 637  LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696

Query: 490  MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             KR+       +N  WTLF  D    L D +G+EFE  Y++ E            +I   
Sbjct: 697  FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602
             L   ++     TG P++ FKD  N        G  +  SNLCTEI   +S   + VCNL
Sbjct: 751  ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810

Query: 603  GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            GS+NL    +   FD+ +L   ++  V +++ +ID       +  + N   R++G+G+ G
Sbjct: 811  GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870

Query: 663  FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721
              +A   L +   S E  ++     E +   A+  S  L  +    ++ FK S++  G F
Sbjct: 871  LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930

Query: 722  PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                     + R            W+ L++ +   G+RNS  +A+ PTA  A I  VS+ 
Sbjct: 931  ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981

Query: 782  IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837
              P + NL+ K    G+    N+ L+ EL++         ++  L     S+   +  + 
Sbjct: 982  FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVPQALPCLE 1041

Query: 838  PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892
            P    +   TAF+ D   LI+  + R  ++D +QS+ LY+ E          L  +   A
Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101

Query: 893  WLMGLKT-TYYLRSRSATS 910
            +  GLKT  YY + R AT+
Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120


>gi|9629420|ref|NP_044641.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
 gi|132605|sp|P08543|RIR1_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
            Short=R1; AltName: Full=ICP6; AltName:
            Full=Ribonucleotide reductase 136 kDa subunit; AltName:
            Full=Ribonucleotide reductase large subunit
 gi|59539|emb|CAA32314.1| ribonucleotide reductase large subunit [Human herpesvirus 1]
          Length = 1137

 Score =  341 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%)

Query: 274  MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324
             +  LV LA  L +               GLQ        Y     G  +E     + R+
Sbjct: 464  HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523

Query: 325  A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            A         G+      +E    E    F++ L     + STP + N GTR+   SSC+
Sbjct: 524  AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583

Query: 373  LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
            L                   + +   +GG+G                   +  V+P LKV
Sbjct: 584  LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636

Query: 431  ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489
             +    A N+   R    C YLE WH DV   L ++     ++ +R  ++ +A W+PDLF
Sbjct: 637  LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696

Query: 490  MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             KR+       +N  WTLF  D    L D +G+EFE  Y++ E            +I   
Sbjct: 697  FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602
             L   ++     TG P++ FKD  N        G  +  SNLCTEI   +S   + VCNL
Sbjct: 751  ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810

Query: 603  GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            GS+NL    +   FD+ +L   ++  V +++ +ID       +  + N   R++G+G+ G
Sbjct: 811  GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870

Query: 663  FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721
              +A   L +   S E  ++     E +   A+  S  L  +    ++ FK S++  G F
Sbjct: 871  LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930

Query: 722  PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                     + R            W+ L++ +   G+RNS  +A+ PTA  A I  VS+ 
Sbjct: 931  ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981

Query: 782  IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837
              P + NL+ K    G+    N+ L+ EL++         ++  L     S+   +  + 
Sbjct: 982  FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041

Query: 838  PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892
            P    +   TAF+ D   LI+  + R  ++D +QS+ LY+ E          L  +   A
Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101

Query: 893  WLMGLKT-TYYLRSRSATS 910
            +  GLKT  YY + R AT+
Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120


>gi|222478370|gb|ACM62262.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1]
 gi|225644|prf||1308225A ribonucleotide reductase
          Length = 1137

 Score =  341 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%)

Query: 274  MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324
             +  LV LA  L +               GLQ        Y     G  +E     + R+
Sbjct: 464  HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523

Query: 325  A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            A         G+      +E    E    F++ L     + STP + N GTR+   SSC+
Sbjct: 524  AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583

Query: 373  LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
            L                   + +   +GG+G                   +  V+P LKV
Sbjct: 584  LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636

Query: 431  ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489
             +    A N+   R    C YLE WH DV   L ++     ++ +R  ++ +A W+PDLF
Sbjct: 637  LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696

Query: 490  MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             KR+       +N  WTLF  D    L D +G+EFE  Y++ E            +I   
Sbjct: 697  FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602
             L   ++     TG P++ FKD  N        G  +  SNLCTEI   +S   + VCNL
Sbjct: 751  ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810

Query: 603  GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            GS+NL    +   FD+ +L   ++  V +++ +ID       +  + N   R++G+G+ G
Sbjct: 811  GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870

Query: 663  FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721
              +A   L +   S E  ++     E +   A+  S  L  +    ++ FK S++  G F
Sbjct: 871  LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930

Query: 722  PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                     + R            W+ L++ +   G+RNS  +A+ PTA  A I  VS+ 
Sbjct: 931  ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981

Query: 782  IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837
              P + NL+ K    G+    N+ L+ EL++         ++  L     S+   +  + 
Sbjct: 982  FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041

Query: 838  PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892
            P    +   TAF+ D   LI+  + R  ++D +QS+ LY+ E          L  +   A
Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101

Query: 893  WLMGLKT-TYYLRSRSATS 910
            +  GLKT  YY + R AT+
Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120


>gi|295134783|ref|YP_003585459.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia
           profunda SM-A87]
 gi|294982798|gb|ADF53263.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia
           profunda SM-A87]
          Length = 564

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 178/641 (27%), Positives = 271/641 (42%), Gaps = 112/641 (17%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           +A++ K +R +       QIL   Y L       E  ++   R+A   A +  + E  A 
Sbjct: 11  IADEPKNKRLWWLNDESQQILNRGYLLKG-----ETVKSAIERIANASAKRLYKPEL-AE 64

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
            F  ++       S+P   N GT      SCF   VPD++ GI   L E  M  K  GG 
Sbjct: 65  AFIEMIERGWMSLSSPIWANMGTERGLPISCFNVYVPDNIEGITHKLGEVIMQTKIGGGT 124

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
              +  +RG G+ +   NGKS G   F+K+ +     ++QGG R+GA  AYL+  H D++
Sbjct: 125 SGYFGELRGRGSAVTD-NGKSSGATSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIK 183

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFL+++           ++     +PD +M+ + +                         
Sbjct: 184 EFLEIKNIG----NPIQNLFYGVCVPDYWMQEMIEGD----------------------- 216

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-- 578
                              +    +W K+L    + G P+I FKD  N   PQ +     
Sbjct: 217 -------------------MEKREIWAKVLESRQQKGLPYILFKDNINRFKPQVYKDKNR 257

Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            +HSSNLC+EI L S+ +E+ +C L S+NL        +D  K    ++ A+  LD V+ 
Sbjct: 258 TIHSSNLCSEIALPSTEDESFICCLSSMNLE------LYDEWKDTEAVKLAIYFLDGVLQ 311

Query: 638 INCHTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
                 E         +    HRA+GLG MG+ S L    IP+    A  +  +  E IS
Sbjct: 312 EFIAKTEGNHYLASANRFAKNHRALGLGAMGWHSYLQKNRIPFEGMRAKGLTHQIFEDIS 371

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A  AS ELA   G     KG                                      
Sbjct: 372 AKATKASKELATIYGEPEMLKG-------------------------------------- 393

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                G+RN+  MAIAPT + + I G  S  I+P   N Y      G+F   N +L   L
Sbjct: 394 ----YGLRNTTLMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLAKGNFMRKNKYLKQLL 449

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +++ L +E     +  H GS+ ++E +  + K I  T  EI  + +I+ AS RQK+IDQA
Sbjct: 450 EEKGLDNEDTWRSIMLHHGSVQHLETLTQEEKDIFKTFKEISQLEIIQQASVRQKFIDQA 509

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           QSLNL +      + ++ +  +AW +G+KT YY RS+S + 
Sbjct: 510 QSLNLNIPAGVPVRDVNQLMIEAWKLGVKTLYYQRSQSVSK 550


>gi|219853155|ref|YP_002467587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosphaerula palustris E1-9c]
 gi|219547414|gb|ACL17864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanosphaerula palustris E1-9c]
          Length = 730

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 164/622 (26%), Positives = 269/622 (43%), Gaps = 86/622 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           F  +   +A      E  A  FY  ++S  F+ ++PTL N+GT   QLS+CF   VPD +
Sbjct: 23  FEDICHRVAAALAADEAEAARFYEAMASLRFLPNSPTLMNAGTEIGQLSACFTLPVPDSI 82

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GIF A+++ A++ K  GG G +++ +R  G+ +  T G + G I F++V N     + Q
Sbjct: 83  GGIFDAMKQGAIIHKTGGGTGYNFSNIRPEGSPVQSTEGVASGPISFMRVFNAATEVIKQ 142

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG+R+GA    L   H D+  F++ +   G+      + N +  + D FM  V++     
Sbjct: 143 GGRRRGANMGILNVQHPDILAFINAKTREGE----IANFNISVMVDDAFMHLVSEK---- 194

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                            F+  +  +    +         I+   +W  ++  +++ G P 
Sbjct: 195 ----------------TFDKVWLVHPHTGEA--------ITVGQIWSGIVDGIWKNGEPG 230

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           I F D  N  +P   +G++ ++N C E  L         C LGSINL A    +  D D 
Sbjct: 231 ILFYDEINRHNPTPQLGMIDTTNPCGEQPLLPY----ESCVLGSINLAACVKGHVLDEDL 286

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L  T+RT VR+LD VID N + IE+  ++  T R IGLGLMG   AL ++ +PY SPEA 
Sbjct: 287 LKETVRTGVRLLDIVIDKNVYPIEEIAEATRTTRKIGLGLMGVHDALLMVRLPYDSPEAR 346

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
              +  M+ +S  A+  S  LA+  G + + +GS+W                        
Sbjct: 347 VWCEHVMKVVSETAVDESRVLAELLGPFPALQGSVW------------------------ 382

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-F 799
                            +RN+    IAPT TI+ + G S  I+P +   Y + N  G  F
Sbjct: 383 -------------TEFQVRNAAMTTIAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKTF 429

Query: 800 TVVNSFLVNELKQR-------DLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF 849
            VVN      L++               + ++  H    G++ ++  +P   +++  TA 
Sbjct: 430 LVVNPVFKEALEETLALQGYSGDDQTHRVDEVIAHVHETGTVQDLVWLPVAFRRLCKTAL 489

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +I     +E  +  Q+ +  + S  + +    +          AW +GLK     R+ S 
Sbjct: 490 DIPWRDHVEMQAAFQREVHASISKTINMPKSATRDDCAEALLLAWRLGLKGITIYRTNSR 549

Query: 909 TSVEKSTLKGVDGKLNAVPVTD 930
             V   TLK      + V V  
Sbjct: 550 EDVVL-TLKEAAPSPSPVAVQT 570


>gi|154249118|ref|YP_001409943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153054|gb|ABS60286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Fervidobacterium nodosum Rt17-B1]
          Length = 841

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 166/694 (23%), Positives = 297/694 (42%), Gaps = 97/694 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKR 338
           L + +++ +D        +IL +RYFL   +G  +E        RVA  +A  E      
Sbjct: 5   LTSVIEHWKDVELSKNAYKILSERYFLKTPSGEFLEKSWDDICRRVARVIATAELVNNPE 64

Query: 339 AVE----------------FYNLLSSFHFMCSTPT------------------------- 357
             E                F++ L S  F+ ++PT                         
Sbjct: 65  LKEKSPFEQLDEVKFWESTFFDFLKSRIFIPNSPTLFNAGMGVRHELLWKSIDDMTLEDY 124

Query: 358 --LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             ++NS      LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R  G+ + 
Sbjct: 125 WEIYNSRNHLHMLSACFVVPVEDSIEGIFEAVKEYALITKAGGGIGSNFSRLRPKGSFVA 184

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474
           GT+G++ G + F+ V N     V QG +R+GA+   L   H D+EEF+  ++    +   
Sbjct: 185 GTHGQASGPVSFMHVFNSAVGVVEQGYRRRGALMGILNIDHPDIEEFITAKEGNDGEKVL 244

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  +++       + M R      +                       E+ E +    + 
Sbjct: 245 KFFNISVG-----ITMDRQELLKLYM----------------------EDGEIELKHPKC 277

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
              +++    L  K+    ++TG P + F    N          + S+N C EI L    
Sbjct: 278 NGSKRVKVRELINKIAKNAWKTGDPGLAFLSEMNKYYAMYPEMTIESTNPCGEIGLAPY- 336

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSI++   + N +F ++  A   R AVR LD+VID+N   +EK +K+    R
Sbjct: 337 ---EACNLGSIDVAKFYMNGEFYWEAFAQATRLAVRFLDDVIDVNVFPLEKIRKAVTDSR 393

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MGF   L+++ IPY S E  + A +   +++ H    S +LAQ +G++  F+ S
Sbjct: 394 RIGLGIMGFADLLYMMDIPYNSHEGRQFAADMTAYMAIHGHDESNKLAQLKGSFPLFEKS 453

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            + +            +     AM  +      +   +    G RN   + IAPT +I+N
Sbjct: 454 RYYR-----------EDEFAPFAMGMSKYDNELKEVFKESKKGKRNVAVLTIAPTGSISN 502

Query: 775 ICGVSQSIDPSYQNLYVK-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           I   S  ++P++   YV+              VN  L ++L +  L     + D     G
Sbjct: 503 IADTSSGLEPNFLLAYVRYMNKHDGTKEALFYVNKVLESKLNKEIL---ERVKDKLVERG 559

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
           S+ +I  IP+++K++  TA +I PM  +      Q+++D   S  + +    + + +  I
Sbjct: 560 SLQDIPEIPEEIKRVFVTAMDISPMDHLLMQDAFQRYVDNNISKTINMPNSATEEDVLNI 619

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Y +A  + ++     R  S  +   ++ K +  K
Sbjct: 620 YLEAMKLNIRGLTIYRDGSLQTQVLTSAKNLKTK 653


>gi|83943745|ref|ZP_00956203.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           EE-36]
 gi|83954746|ref|ZP_00963457.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           NAS-14.1]
 gi|83841030|gb|EAP80201.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           NAS-14.1]
 gi|83845425|gb|EAP83304.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp.
           EE-36]
          Length = 760

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 157/658 (23%), Positives = 262/658 (39%), Gaps = 85/658 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+  +   +  + R+A  LA  E   EK    FY  L  F F+ +      
Sbjct: 15  MKYRFKDADGTPRDVTVEDSWRRIARDLAQVEKAPEKWEEAFYEALEDFKFLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G +
Sbjct: 75  AGTARRVTLFNCFVMGTVPDSMAGIFDMLKEAAVTMQQGGGIGYDFSTIRPRGADVLGVS 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM  V  +A W L                                 KV+R
Sbjct: 191 FNMSVLITDPFMDAVKADASWDLQF-----------------------------NGKVYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   +E   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVQARDLWNRIMKATYEFAEPGVIFIDRINEANNLSYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+    ++   D      + L   + TAVR++DNV+D++   +++ +      
Sbjct: 278 ACLLGSINMARMVSDPFGDNPQLDVEALNKLVATAVRMMDNVVDVSKFPLDEQQAEAKAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S  A E  +  ++ I+  A  ASV+LA+E+GA+  F+ 
Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSDAAAEQTEAWLKAIARAAYLASVDLAKEKGAFPLFEA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + T +   ++++  +   G+RN+   +IAPT TI+
Sbjct: 398 DAY--------------------LASGTMQQMDEDVRDAIAENGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   M  DLK       
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L      A  + P+  ++  +  QKW+D + S  +    + S      +Y  
Sbjct: 485 -----DAPLPDYFVNAQTLAPLDHVKMQAAAQKWVDSSISKTINCPEDISFDAFKDVYMA 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           AW  G K     R    T    S  +  D     V           +   S      E
Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLSVSESADTAPGEVAAQATAEEGGEVVYMSDPLDRPE 597


>gi|254459677|ref|ZP_05073093.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium HTCC2083]
 gi|206676266|gb|EDZ40753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 762

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 149/642 (23%), Positives = 256/642 (39%), Gaps = 85/642 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  ++R+A  LA  E + E    +FY  L  F ++ +      
Sbjct: 15  MKYRFKEADGTPIDATVEDSWVRIAKDLAKVEKDPEHWEEQFYAALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+   +PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARNVTLFNCFVMGAIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  +A W L                               + +V+R
Sbjct: 191 FNVSVLITDPFMEAVKADAEWDLEF-----------------------------DGEVYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A+ LW K++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVRALELWNKIMQGTYDYAEPGVIFIDRINKANNLGYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL     N        D   L   + TAVR++DNV+D +   ++   +     
Sbjct: 278 ACLLGSINLARLVPNPFEVDAALDVSALNELVATAVRMMDNVVDASKFPLDAQAREAAAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++   Y S EA    D+ +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMVGQRYGSEEAARQTDQWLHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                               D    +       ++++  ++  G+RN+   +IAPT TI+
Sbjct: 398 --------------------DAFLASGAMLDMDEDVRDAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      +W +              
Sbjct: 438 LYAGNVSSGIEPVFAYAYSRKVLQKDGSRTEEEVVD--YAVQMWRDKFGDK--------- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P+  +   +  QKW+D + S  +    + +      +Y +
Sbjct: 487 -------ELPDYFVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDIAFDDFKEVYME 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           AW  G K     R    T    S  +        +  TD   
Sbjct: 540 AWDSGCKGCTTYRPNDVTGSVLSVSEDKKDAPEVIANTDAEP 581


>gi|109287943|ref|YP_654637.1| hypothetical protein MIV065R [Invertebrate iridescent virus 3]
 gi|123862746|sp|Q196Z5|RIR1_IIV3 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|106073566|gb|ABF82095.1| hypothetical protein MIV065R [Aedes taeniorhynchus iridescent
           virus]
          Length = 630

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 185/680 (27%), Positives = 277/680 (40%), Gaps = 101/680 (14%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   R+  F+ LGLQ L D Y           PQ  F  +A      +   E  A   Y+
Sbjct: 4   IDESRNNLFDALGLQRLKDSYMKEDES----SPQERFAFIARQFCADD---EPLAQRLYD 56

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S      S+P L    T+     +CFL  + D   G+     E + L+          
Sbjct: 57  YMSQHWLSPSSPQLSFGRTKQGLPIACFLPYLHDTARGLIDTWAEVSELSMIG------- 109

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
               GLG  I   + KS G+IP L+  + +  A  QG  R+G+  AYL+  H ++  FL+
Sbjct: 110 -GGIGLGVGIRQPDEKSVGIIPHLRTYDASCTAYKQGQTRRGSYAAYLDISHPEILSFLN 168

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI---- 520
            R+  GD   +  +++    +PD FMK++      +  +P    D        F+     
Sbjct: 169 TRRVGGDHNYKLLNLHNGVNVPDSFMKKI---WILSTLAPFVKMDPCPTTETLFKKAVTT 225

Query: 521 ----AY----------------------ENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
                Y                       N     D    KV   I A  LW +++    
Sbjct: 226 LKDSRYFGADDRWLGEVSFAALAEQLDVVNRWDLIDPHTGKVKETIKATELWERIILTRA 285

Query: 555 ETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
           ETG P+I + D  N   PQ        +  SNLC+E+ L +    TAVC L S+NL  +F
Sbjct: 286 ETGEPYIHWIDTSNRALPQFQKNLGLSIRQSNLCSEVVLPTDETRTAVCCLASLNLD-YF 344

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                +             VL   ID    T+++A  S  + RAIG+G +GF S L    
Sbjct: 345 DKWCNNEQFYLDVATYLDNVLQYFIDHAPPTLKRAVHSARSERAIGIGALGFHSYLQSKM 404

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +   S  A  I  +  + IS H    ++EL + RG      G+                 
Sbjct: 405 VDIESLPAYLINKKIFKTISSHLERVNLELGELRGEAPDCVGT----------------- 447

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790
                                    G R S+  AIAP AT + I G  S S +P   N+Y
Sbjct: 448 -------------------------GRRFSHMTAIAPNATSSIIMGNTSPSCEPFRANIY 482

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  +SG F   N  L   L++R   +   E + S +K HDGS+ ++ ++    KK+  T
Sbjct: 483 KQDTISGSFVTYNKHLKRLLEERIPDNQARERVWSSIKMHDGSVQHLNQLTVQEKKVFKT 542

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             EI+ + L+  A+ RQKWIDQ+QS +L+ + +     +  I+ +AWL GLKT YY RSR
Sbjct: 543 WPEINQLSLVMLAADRQKWIDQSQSTSLFFNPDERISYVHKIHLKAWLHGLKTLYYFRSR 602

Query: 907 SATSVEKS--TLKGVDGKLN 924
              +V+K   T    D K  
Sbjct: 603 KILTVDKVHHTTTTADPKTE 622


>gi|163744560|ref|ZP_02151920.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381378|gb|EDQ05787.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 759

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 154/656 (23%), Positives = 264/656 (40%), Gaps = 90/656 (13%)

Query: 293 FEYLGLQILYDR-YFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F     + ++D  Y         +    +  + R+A  LA  E++ +    +F+  L  F
Sbjct: 4   FTAPIAEQIWDMKYRFKGADGTAKDVTVEDTWRRIARDLAQVESDADGWEDKFFGALEDF 63

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            ++ +      +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +
Sbjct: 64  KYLPAGRITAGAGTARRVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTI 123

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G +  + G + F+ V +     +   G R+GA+ A +   H DVE+F+  + 
Sbjct: 124 RPRGADVLGVSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK- 182

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  R    N +  + D FM+ V  +  W L                          
Sbjct: 183 ---SDPARLRMFNMSVLVTDPFMEAVKADGSWDLLFG----------------------- 216

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  KV++ + A  LW  ++   +    P + F D  N  +   +   + ++N C E
Sbjct: 217 ------GKVYKTVQARDLWNNIMQATYSYAEPGVIFIDRINAANNLNYCETIAATNPCGE 270

Query: 588 ITLNSSSEETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
             L         C LGSINL              D D ++  + TAVR++DNV+D++   
Sbjct: 271 QPLPPY----GACLLGSINLARLVAQPFDEAAHLDQDAMSELVATAVRMMDNVVDVSNFP 326

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + +        R IGLG+ G   AL ++ + Y S EA    +  ++ I+  A  ASV+LA
Sbjct: 327 LPEQANEAQNKRRIGLGVTGLADALLMVGLRYGSDEAAAQTESWLKAIARAAYLASVDLA 386

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+GA+  F                      ++   + T +   D+++  ++  G+RN+ 
Sbjct: 387 KEKGAFPLFDA--------------------EKFLASGTMQQMDDDVRDAIREHGIRNAL 426

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             +IAPT TI+   G  S  I+P +   Y +  +  D +     +V+       +   M 
Sbjct: 427 LTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMW 479

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
            +LK               L      A  + P   ++  +  QKWID + S  +    + 
Sbjct: 480 RELKGDT-----------PLPDYFVNAQTLPPADHVKMQAAAQKWIDSSISKTINCPEDI 528

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           S      +Y QAW MG K     R    T    S L     K +  P   P+  + 
Sbjct: 529 SFDDFKDVYMQAWDMGCKGCTTYRPNDVTG---SVLSVSSEKTDKAPADSPDQVSE 581


>gi|83952673|ref|ZP_00961403.1| ribonucleoside-diphosphate reductase, putative [Roseovarius
           nubinhibens ISM]
 gi|83835808|gb|EAP75107.1| ribonucleoside-diphosphate reductase, putative [Roseovarius
           nubinhibens ISM]
          Length = 820

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 146/632 (23%), Positives = 246/632 (38%), Gaps = 85/632 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               +   +G+  +   +  + R+A  LA  E         F+  L  F ++ +      
Sbjct: 1   MKYRYKEPDGTVHDGSVEDTWRRIARALAQAEKTPADWEGRFFEALEDFKYLPAGRITAG 60

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 61  AGTGRSVTLFNCFVMGTVPDDMGGIFDMLREAALTMQQGGGIGYDFSTIRPRGADVKGVG 120

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 121 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIAAK----SDPARLRM 176

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV+R
Sbjct: 177 FNLSVLVTDPFMEAVRADGSWDLIF-----------------------------DGKVYR 207

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  LW  ++   ++   P + F D  N ++   +V  + ++N C E  L        
Sbjct: 208 TIQARDLWNTIMQATYDYAEPGVIFIDRINAQNNLNYVETIAATNPCGEQPLPPY----G 263

Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+              D   L   + TAVR++DNV+DI+   +   +      
Sbjct: 264 ACLLGSINMARLVADPFSEAAHLDEGALNDLVETAVRMMDNVVDISRFPLPAQEAEAQNK 323

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y SPEA E     M  I+  + +AS  LA E+GA+  +  
Sbjct: 324 RRIGLGVTGLADALAMVGLRYGSPEAAEQTGVWMARIANASYAASARLAGEKGAFPLYDA 383

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             + +                        +    E +  +   G+RN+   ++APT TI+
Sbjct: 384 KAYAK--------------------APMIKKLDAETRALIAEHGLRNALLTSVAPTGTIS 423

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P + N Y +  +  D +     +V+       +   M  D+K       
Sbjct: 424 LYAGNVSSGIEPIFANSYTRKVLQKDGSRTEEEVVD-------YAVQMWRDVKG------ 470

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L +    A  + P   +   +  Q W+D + S  +    +   +    +Y Q
Sbjct: 471 -----DAPLPEYFVNAQTLSPADHVRMQAAAQDWVDSSISKTINCPEDIDFEAFKDVYMQ 525

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           AW  G K     R    T    S     +   
Sbjct: 526 AWDTGCKGCTTYRPNDVTGSVLSVEAPANATA 557


>gi|194172963|ref|YP_002003607.1| ribonucleoside triphosphate reductase alpha chain [Escherichia
           phage rv5]
 gi|114796001|gb|ABI79175.1| ribonucleoside triphosphate reductase alpha chain [Escherichia
           phage rv5]
          Length = 771

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 171/828 (20%), Positives = 321/828 (38%), Gaps = 82/828 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  +G  ++F+ +RL         G  + +   +  + YK +YDG +  ++  A+I S
Sbjct: 4   KVIKSNGCEVAFDPERLNKAAIFGDDG--NGNWSHIALDAYKRLYDGCTTKEVNQAIIDS 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
             +   K+  ++++  R L+ ++ +E      K P            P ++   +E+G  
Sbjct: 62  CVS--RKDEEHSRMAGRVLIGQIYKEAFGGFTKIPSL----------PSFYNTMVEKGYW 109

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMR 323
                      +L  L   + + +D  + Y  L+   D+Y +      +  E PQ  FM 
Sbjct: 110 E---DMGYSFTELNTLDAVIDHSKDLGYGYAVLKQFRDKYGIKDTLKDTLFESPQMMFMG 166

Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM +   + +  +    V+ Y  LS       TP L    T     +SC +    D   
Sbjct: 167 IAMAVMKNMPKERRINDVVKLYTYLSDLKINAPTPYLNGLRTGKTGYASCCVIKADDTAK 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A +    +     G+G   +  R  G  + G   K  G IP+ +  +      N+ 
Sbjct: 227 SIGVAREVAYTMTVNQAGIGYYLSS-RSAGDGVRGNTIKHMGKIPYYRGIDAGVK-ENRQ 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+           ++E + LR       +R + M+ +  I   F+ RV +N  W L
Sbjct: 285 QSRGGSATVSFLALDPQIDELIRLRNPMTVASKRINTMDYSIGINRSFINRVAKNLDWML 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            S      LH+         ++    +  + +      I A  L  ++LT   E G  ++
Sbjct: 345 VSYKHAPQLHEGIFTMSMEEFDAEVDRIAKDDSIPKTWIRARDLAVELLTQRIEVGRLFV 404

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--------GSINLLAHFAN 613
            + D  N  +P     V++SSNLC EI L +                   ++  L+    
Sbjct: 405 YWTDEMNRHTPF--KDVIYSSNLCAEIALPTKGYSDMRNIFKHDVDDGEVALCFLSSLVA 462

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            +   ++        V ++DNV++I  +  E  + +    R+IG+GL      +    + 
Sbjct: 463 GRVTPEEYEDVAYYTVLMIDNVMEIMTYPYENMESTVKKRRSIGVGLTNVAHFIASHKVT 522

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y SPE+ ++  +  E  S+    AS+ LA+ERG       + + +G  PID+     +  
Sbjct: 523 YGSPESKQLVHDLAELHSYSLHKASLRLAKERGVCEWMHKTKYPEGWLPIDTYN---KEV 579

Query: 734 DELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
           D +  + + +  W+ L+K +    G+RNS   A  P  + +     +  + P  +++  K
Sbjct: 580 DSVVKDPSLKQDWEGLRKEIIENGGLRNSVLEAYMPNESSSLATNTTNGVYPVREHIIFK 639

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
            +  G    +                                    D+LK+ + +A+++D
Sbjct: 640 KSPQGQVLFIVPDY--------------------------------DELKEYYTSAWDVD 667

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +I+  +  QK+  QA S +LY+D       + S K+      +A   G+KT YYL S
Sbjct: 668 TNDMIDMYAVIQKFTGQAISADLYIDYTKLKDGKISMKEQLGYLIRATKFGMKTWYYLNS 727

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           R            +  +L+A    +  +  +   I  S   D  CE C
Sbjct: 728 RVGAG------DSLAEELHAKKQAEDETRKNYPLIADSSVEDPYCESC 769


>gi|149914029|ref|ZP_01902561.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149812313|gb|EDM72144.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 759

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 148/660 (22%), Positives = 256/660 (38%), Gaps = 85/660 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ I +  +  + R+A  LA  E + +    +FY  L  F ++ +      
Sbjct: 15  MKYRLKEADGTPIDQSVEDTWRRIARALAAVEDDPKLWEQKFYAALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PDD+ GIF  L+E A+  +  GG+G D++ +R  GA +    
Sbjct: 75  AGTGRSVTLFNCFVMGTIPDDMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAEVKSVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIAAKA----DAARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                                 KV+R
Sbjct: 191 FNLSVLVTDDFMEAVKADGPWELEFG-----------------------------GKVYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVEARDLWNRIMQATYDYAEPGVIFIDRINAANNLNYCETISATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+     +        D D L   +  AVR++DNV+D +   +E   +     
Sbjct: 278 ACLLGSINMARLVTDPFGPEAALDEDALDDLVAVAVRMMDNVVDASRFPLEAQAREAEAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S EAV   +  +  I+  A  ASV+LA+E+G +  F  
Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSDEAVAQTEAWLHQIARAAYLASVDLAREKGPFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                                    +   R    ++++ +   G+RN+   +IAPT TI+
Sbjct: 398 --------------------GAFLASGNMRGMDADVREAIAEHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      +W E              
Sbjct: 438 LYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVD--YAVQMWREKFGD---------- 485

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  DL      A  + P   ++  +  Q+W+D + S  +    +   +    +Y Q
Sbjct: 486 ------ADLPDYFVNAQTLAPQDHVKMQAAAQRWVDSSISKTINCPADIGFEAFKDVYMQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           A+  G K     R    T    S  +  D          P+     + +       TE E
Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEASDAAPGEAGAQMPHEGGEIVYMSEPLDRPTELE 599


>gi|159045489|ref|YP_001534283.1| putative Vitamin B12-dependent ribonucleotide reductase
           [Dinoroseobacter shibae DFL 12]
 gi|157913249|gb|ABV94682.1| putative Vitamin B12-dependent ribonucleotide reductase
           [Dinoroseobacter shibae DFL 12]
          Length = 765

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 156/657 (23%), Positives = 255/657 (38%), Gaps = 85/657 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  + R+A  LA  E++      +FY  L  F F+ +      
Sbjct: 15  MKYRFKEADGTPIDVTVEDSWRRIARALASVESDPAAWEPKFYAALEDFKFLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTERSVTLFNCFVMGTVPDDMGGIFEGLKEAALTMQQGGGIGYDFSTIRPKGAAVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV+ 
Sbjct: 191 FNVSVLVTDAFMEAVKADGSWDLVF-----------------------------DGKVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   FE   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVEARDLWNKIMKATFEYAEPGVIFIDRINAANNLSYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL    ++        D   L   + TAVR++DNV+D +   +E         
Sbjct: 278 ACLLGSINLSRLISDPFGEGAALDEAALEELVATAVRMMDNVVDASRFPLEAQAAEARAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S  A    +  +  I+  A  ASV+LA E+GA+  F+ 
Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSEAAARQTERWLHRIARAAYLASVQLATEKGAFPLFEA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + T +    +++  +   G+RN+   +IAPT TI+
Sbjct: 398 DAY--------------------LQSGTMQTMDADVRAAIAEHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      LW E              
Sbjct: 438 LYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVD--YAVQLWREKFGD---------- 485

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
               +PD        A  + P+  +   +  QKW+D + S  +    + S  +   +Y  
Sbjct: 486 --ADLPDH----FVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDISFAEFKDVYMA 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R  + T    S          A        S   L       S+ 
Sbjct: 540 AWDQGCKGCTTYRPNAVTGSVLSVSDSATKDSEAEKGEVKPVSEARLDGDVVYISEP 596


>gi|84683506|ref|ZP_01011409.1| ribonucleoside-diphosphate reductase, putative [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668249|gb|EAQ14716.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales
           bacterium HTCC2654]
          Length = 758

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 154/645 (23%), Positives = 260/645 (40%), Gaps = 89/645 (13%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ + +  +  + R+A  LA  E E+     EFY  L  F F+ +      
Sbjct: 15  MKYRLKEADGTAVDKTIEDTWHRIADALADSEPERAG---EFYAALEDFKFLPAGRITAG 71

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 72  AGTARNVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVA 131

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 132 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAARLRM 187

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V     W L                               +   +R
Sbjct: 188 FNMSVLVTDPFMEAVKSGGAWDLTF-----------------------------DGTTYR 218

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 219 TVEARDLWNKIMQATYDYAEPGVIFIDRINRMNNLAYCETIAATNPCGEQPLPPY----G 274

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL     +        DYD L+  + TAVR++DNV+D +   +E+  +     
Sbjct: 275 ACLLGSINLARLVEHPFEEAATLDYDALSDLVTTAVRMMDNVVDASRFPLEQQAREAEAK 334

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    +  M+ I+  A  ASVELA+E+G +  F  
Sbjct: 335 RRIGLGVTGLADALLMLGLRYGSDEAAAQTEVWMKAIARAAYLASVELAKEKGPFPLFDA 394

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + + +   D++++ ++  G+RN+   +IAPT TI+
Sbjct: 395 EAY--------------------LASGSLQHMDDDVREAIREHGIRNALLTSIAPTGTIS 434

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   M  D         
Sbjct: 435 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRD--------- 478

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
             +    DL      A  + PM  ++  +  QKW+D + S  +    + S +    +Y +
Sbjct: 479 --KFGDADLPDYFVNAQTLAPMDHVKMQAAAQKWVDSSISKTINCPEDISFEGFKDVYME 536

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           AW  G K     R    T    S +         +  TD      
Sbjct: 537 AWETGCKGCTTYRPNDVTGSVLS-VSEEKAAPEVLSTTDDEPRQP 580


>gi|51512034|gb|AAU05233.1| ribonucleoside-diphosphate reductase 1 alpha chain [Enterobacteria
           phage T5]
          Length = 811

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 156/796 (19%), Positives = 286/796 (35%), Gaps = 90/796 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 42  KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M  +             
Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 150

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
               +   + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 151 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A N   
Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 326

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 327 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 386

Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFRK---ISAVALWRKML 550
           S     ++H+ +  +    FE  Y   E++         E K       +SA  +    L
Sbjct: 387 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPTAPKVSAKEILDTWL 446

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 447 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 504

Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                   +   NL            +   T    ++ +D +I+I  +     + +    
Sbjct: 505 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 564

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA   F  
Sbjct: 565 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFNR 624

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P  + +
Sbjct: 625 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 680

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + GV+ SI+P  + + +K +       +              D   +            
Sbjct: 681 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 721

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886
                      +  A+++D +  I+  +  QK+  Q+ S N+Y D    +        + 
Sbjct: 722 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 770

Query: 887 FIYRQAWLMGLKTTYY 902
             +  A   G KT YY
Sbjct: 771 RDFMTAVKYGWKTWYY 786


>gi|89070843|ref|ZP_01158088.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516]
 gi|89043581|gb|EAR49790.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516]
          Length = 761

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 151/654 (23%), Positives = 257/654 (39%), Gaps = 85/654 (12%)

Query: 302 YDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ ++   +  + R+A  LA  E +      +FY  L  F F+ +      
Sbjct: 15  MKYRLKDADGTPVDTDVEGTWRRIARALASVEADPAAWEPKFYAALEDFRFLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTDRSVTLFNCFVMGTVPDTMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAPVAGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE+F++ +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIEAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +A W L    E                             VFR
Sbjct: 191 FNMSVLVTDPFMEAVKADADWELTFGGE-----------------------------VFR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVRARELWDRIMRSTYDYAEPGVIFIDRINEMNNLAYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL    A         D   L   + TAVR++DNV+D +   + +  +     
Sbjct: 278 ACLLGSINLARLVAEPFAEGASLDEAALDELVATAVRMMDNVVDASRFPLPQQAEEARNK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++   Y S EA  + +  M+ I+  A  AS +LA E+GA+  F+ 
Sbjct: 338 RRIGLGVTGLADALLMVGQRYGSEEAAALTEAWMKRIARAAYLASADLAAEKGAFPLFQA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + T     D+++  +   G+RN+   ++APT TI+
Sbjct: 398 EPY--------------------LASGTMAQMDDDVRAAIAEKGIRNALLTSVAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      LW E              
Sbjct: 438 LYAGNVSSGIEPVFAFAYNRKVLQKDGSRTEEEVVD--YAVQLWRET------------R 483

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
               +P         A  + PM  +   +  QKW+D + S  + +  +   +    +Y +
Sbjct: 484 GDAELPAH----FVNAQTLAPMDHVRMQAAAQKWVDSSISKTINVPADIDFESFKDVYME 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           A+  G K     R    T    S  +       A  V    ++   + +     
Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEEKKEAPAAPEVVSDENAGEVIYMTEPLD 593


>gi|126728437|ref|ZP_01744253.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata
           E-37]
 gi|126711402|gb|EBA10452.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata
           E-37]
          Length = 762

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 141/644 (21%), Positives = 247/644 (38%), Gaps = 84/644 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ I+   +  + R+A  LA  E E       FY  L  F ++ +      
Sbjct: 15  MKYRLKEADGTPIDLSVEDTWRRIARALAEVEAEPAVWEDRFYAALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARSVTLFNCFVMGTIPDTMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVTGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIGAK----SDSARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               +  V+ 
Sbjct: 191 FNLSVLVTDTFMEAVKADGPWDLQF-----------------------------DGTVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQARDLWNRIMRATYDYAEPGVIFIDRINKANNLNYVETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL            + D D L   +  AVR++DNV+D +   + + +      
Sbjct: 278 ACLLGSVNLARLVAEPFTDAARLDEDALDELVTCAVRMMDNVVDASRFPLPQQEAEAQAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++   Y S EA   A+  ++ I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMMGQRYGSEEAAVQAEGWLKRIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                              ++++  V+  G+RN+   +IAPT TI+
Sbjct: 398 EKYLASGNM--------------------MAMDEDVRSAVREHGIRNALVTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +               K     +E ++        ++ 
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQ--------------KDGTRTEEEVVDYAVQMYRAVH 483

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
             +    +L      A  + P+  +   +  QKW+D + S  +    + S +    +Y  
Sbjct: 484 GED---AELPDYFVNAQTLAPLEHVRMQAAAQKWVDSSISKTINCPEDISFEDFKEVYMA 540

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           A+  G K     R    T    S  +                + 
Sbjct: 541 AYETGCKGCTTYRPNDVTGSVLSVSEEKKAPEVVANSDAEPQTP 584


>gi|59897233|gb|AAX12028.1| ribonucleoside-diphosphate reductase alpha chain [Enterobacteria
           phage T5]
          Length = 776

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 157/796 (19%), Positives = 287/796 (36%), Gaps = 90/796 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 7   KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M  +             
Sbjct: 66  AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 115

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
               +   + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 116 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A N   
Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 291

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 292 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 351

Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFR---KISAVALWRKML 550
           S     ++H+ +  +    FE  Y   E++         E K      K+SA  +    L
Sbjct: 352 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 411

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 412 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 469

Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                   +   NL            +   T    ++ +D +I+I  +     + +    
Sbjct: 470 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 529

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA   F  
Sbjct: 530 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFNR 589

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P  + +
Sbjct: 590 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 645

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + GV+ SI+P  + + +K +       +              D   +            
Sbjct: 646 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 686

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886
                      +  A+++D +  I+  +  QK+  Q+ S N+Y D    +        + 
Sbjct: 687 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 735

Query: 887 FIYRQAWLMGLKTTYY 902
             +  A   G KT YY
Sbjct: 736 RDFMTAVKYGWKTWYY 751


>gi|34496901|ref|NP_901116.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC
           12472]
 gi|34102757|gb|AAQ59121.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC
           12472]
          Length = 950

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 156/667 (23%), Positives = 271/667 (40%), Gaps = 82/667 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           ++L ++Y  +   S  E+      RVA  LA  E +  +    F+  L    F+      
Sbjct: 17  EVLLEKYAKNGEQSVSEVR----HRVARALAELEKDPARFEPLFFEALDHG-FIPGGRIN 71

Query: 359 FNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +GT     L +CF+  V D +        GI+ AL + A   +  GG+G +++ +R  
Sbjct: 72  SAAGTDLRATLINCFVQPVGDSVSETEHGKVGIYQALLQAAETMRRGGGVGYNFSRIRPR 131

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + GTN ++ G + +++V + +   V   G R+GA    L+  H DVE+F+  +    
Sbjct: 132 GARVKGTNSRASGPVSYMRVFDRSCETVESAGARRGAQMGVLDVSHPDVEDFIHAK---- 187

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            D+    + N +  + D FM+ V  +A W L     V  + D +   F  A         
Sbjct: 188 -DQGDLRNFNISVGVSDDFMRAVEADADWQLT--HAVEPMSDAFPDSFRRA--------- 235

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
              + V+R + A  LWR+++   ++   P + F    N  +   +  V+ S+N C E  L
Sbjct: 236 -DGLWVYRTVRARDLWRQIMESTYDHAEPGVLFMTRINQDNNLSYCEVIESTNPCGEQPL 294

Query: 591 NSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                +   C+LGS+NL  H          FD+      +R +VR+LDNV+D+    + +
Sbjct: 295 P----DYGCCDLGSVNLTRHVRAPFGDKAHFDFKSFEKVVRMSVRMLDNVLDLTVWPLPE 350

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++     R +GLG  G   AL +L I Y S E    A    E +   A  ASV+LA E+
Sbjct: 351 QQREAMNKRRVGLGFTGLGDALIMLKIRYDSEEGRRFAARISESMRDAAYDASVDLAIEK 410

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  F    +                   LA    +     +++ R++  G+RNS+ ++
Sbjct: 411 GAFPLFDAEKY-------------------LAAPHCASRLPAKIQARIRKHGIRNSHLLS 451

Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           IAPT TI+       S  I+P +   Y +     D               +   E ++ D
Sbjct: 452 IAPTGTISLAFADNASNGIEPPFSWFYTRKKRMAD---------------NSQQEYLVED 496

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
             Y    +   +     L     +A E+  +  +   +    ++D A S  + +  +   
Sbjct: 497 HAYRVWRMQGGD--TAKLPDYFVSALEMSALDHMRMVAAVAPYVDTAISKTVNVPADYPF 554

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS----RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           +  + +Y +AW  GLK     R      S  SVE +        L+          T + 
Sbjct: 555 EDFESLYLEAWRNGLKGITTYRPNNVLGSVLSVEPAQRAAAPEDLSGAASDPDRRVTLNT 614

Query: 939 GIPSSCT 945
               + +
Sbjct: 615 APTPALS 621


>gi|326632982|ref|YP_004306571.1| putative aerobic ribonucleoside diphosphate reductase large subunit
           [Enterobacteria phage SPC35]
 gi|321272176|gb|ADW80068.1| putative aerobic ribonucleoside diphosphate reductase large subunit
           [Enterobacteria phage SPC35]
          Length = 776

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 157/796 (19%), Positives = 287/796 (36%), Gaps = 90/796 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 7   KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M  +             
Sbjct: 66  AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 115

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
               +   + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 116 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A N   
Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 291

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 292 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 351

Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFR---KISAVALWRKML 550
           S     ++H+ +  +    FE  Y   E++         E K      K+SA  +    L
Sbjct: 352 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 411

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 412 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 469

Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                   +   NL            +   T    ++ +D +I+I  +     + +    
Sbjct: 470 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 529

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA   F  
Sbjct: 530 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFDR 589

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P  + +
Sbjct: 590 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 645

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + GV+ SI+P  + + +K +       +              D   +            
Sbjct: 646 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 686

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886
                      +  A+++D +  I+  +  QK+  Q+ S N+Y D    +        + 
Sbjct: 687 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 735

Query: 887 FIYRQAWLMGLKTTYY 902
             +  A   G KT YY
Sbjct: 736 RDFMTAVKYGWKTWYY 751


>gi|46401832|ref|YP_006924.1| putative aerobic ribonucleoside diphosphate reductase, large
           subunit [Enterobacteria phage T5]
 gi|45775010|gb|AAS77142.1| putative aerobic ribonucleoside diphosphate reductase, large
           subunit [Enterobacteria phage T5]
          Length = 811

 Score =  337 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 157/796 (19%), Positives = 287/796 (36%), Gaps = 90/796 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204
           K++  DGT+  F  ++L    E  C  + DVS   +     K +  G+ +SD L  ALI 
Sbjct: 42  KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++ +LI+  P Y        L ++R+ +  +      +  H  M  +             
Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 150

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322
               +   + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M
Sbjct: 151 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
            +AM +  +       A++ YN +S       TP L    +     +SC L    D L  
Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A      +     G+G      R +   +        G +P+ +  + +  A N   
Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 326

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R G+       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL 
Sbjct: 327 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 386

Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFR---KISAVALWRKML 550
           S     ++H+ +  +    FE  Y   E++         E K      K+SA  +    L
Sbjct: 387 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 446

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601
            +  ETG  +       N       +  +  +NLC EIT  +                  
Sbjct: 447 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 504

Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
                   +   NL            +   T    ++ +D +I+I  +     + +    
Sbjct: 505 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 564

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+GLM    A+    + Y   EA        E +S+    ASV LA+E+GA   F  
Sbjct: 565 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFNR 624

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           +   +G+  ID+     +    + +     + W+ L+  +   GMRNS   A  P  + +
Sbjct: 625 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 680

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + GV+ SI+P  + + +K +       +              D   +            
Sbjct: 681 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 721

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886
                      +  A+++D +  I+  +  QK+  Q+ S N+Y D    +        + 
Sbjct: 722 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 770

Query: 887 FIYRQAWLMGLKTTYY 902
             +  A   G KT YY
Sbjct: 771 RDFMTAVKYGWKTWYY 786


>gi|322384851|ref|ZP_08058512.1| ribonucleotide reductase large subunit-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150320|gb|EFX43822.1| ribonucleotide reductase large subunit-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 891

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 143/643 (22%), Positives = 265/643 (41%), Gaps = 61/643 (9%)

Query: 312 SRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +  + P   + R+A  +A  E    ++++   +F  +L  +  +        +       
Sbjct: 104 NIEKTPDEMWDRLAKAMASVEKTDAKRQEWTEKFRYILDEWKLVPGGRIAAGADASDELT 163

Query: 368 LSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++     D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 164 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 223

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  W+ D+ +F+ +++  G    +  + N +  I 
Sbjct: 224 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 279

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD     ++               +A   E+K +R + A  +W
Sbjct: 280 NSFMKAVKEDLDWELVFPDTTDPEYNEKWDG-----NLDAWKALGKEVKHYRTVRARDVW 334

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L +      VCNL ++N
Sbjct: 335 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 390

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +   N+  D+++L   +R +VR LDNVID   +  E+ +K+    R IG+G MG  
Sbjct: 391 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 450

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L I Y SPE++E  D+   F++  A  AS E+A E+G++  F    + Q  F  +
Sbjct: 451 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 510

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +                   + E+ + +   GMRN   +  APT +   + G S  I+P
Sbjct: 511 MVA-----------------EFPEVGESISQNGMRNVTVITQAPTGSTGTMVGTSTGIEP 553

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   Y + +  G                  W +A                   ++L   
Sbjct: 554 YFAFEYFRQSRLGFDKQYVPIAQE-------WKDAHPD----------------EELPDY 590

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
             TA ++     I + +  Q+W+D + S       + + ++   +Y  A+ +G K     
Sbjct: 591 FITAMDLSAEDHIRAQAAIQRWVDSSISKTANCPADFTVEETKRLYELAFDLGCKGVTIY 650

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           R  S      ST K  + K  AV   +  S   + G  +S  +
Sbjct: 651 RDGSRDVQVLSTDKKDEEKKPAVEQMEITSEAAAFGDEASLNN 693


>gi|163732870|ref|ZP_02140315.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149]
 gi|161394230|gb|EDQ18554.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149]
          Length = 834

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 148/631 (23%), Positives = 256/631 (40%), Gaps = 85/631 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  + R+A  LA  E   +    +FY+ L  F ++ +      
Sbjct: 15  MKYRFKEADGAPIDVTVEDTWRRIARDLARVEKTPDIWEEQFYSALKDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + +V+R
Sbjct: 191 FNMSVLVTDPFMEAVKADGPWDLVF-----------------------------DGQVYR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TLQARDLWNRIMQATYDYAEPGVIFIDRINQANNLNYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+    +         D   L   + TAVR++DNV+D +   +E   +  H  
Sbjct: 278 ACLLGSINMARLVSAPFEEAAKLDEVALNDLVATAVRMMDNVVDASKFPLEAQAREAHAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL ++ + Y S EA    D  +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSDEAARQTDRWLHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                      + T +   +++++ V+  G+RN+   +IAPT TI+
Sbjct: 398 DKY--------------------LASGTMQAMDEDVREAVREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+      +W E              
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWREKFGDK--------- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  + P+  ++  +  QKW+D + S  +    +        +Y +
Sbjct: 487 -------ELPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYME 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           AW  G K     R  + T    S  +     
Sbjct: 540 AWDSGCKGCTTYRPNAVTGSVLSVSEKKKAP 570


>gi|327198491|ref|YP_004327079.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage
           phiEa104]
 gi|311875187|emb|CBX44447.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage
           phiEa104]
          Length = 744

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 158/781 (20%), Positives = 292/781 (37%), Gaps = 78/781 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +   DGT+  F+  RL    E A +    V    +  +  K  +DG + SDL+ A+I +
Sbjct: 4   NVKKSDGTVQPFDPSRLNRWAEWAAN--YGVDWAEIAVDAVKRCHDGCTTSDLQWAMIEA 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 +   +A +  R L+  + +E      K P       +   Y +     + E   
Sbjct: 62  CIDRQTQ--AHANMAGRLLIGNVYKEAFGGFRKIPT------LTDFYDKMRTLNLWE--- 110

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
                    D +L YL   + + +D  + Y  ++   D+Y +         E PQ  FM 
Sbjct: 111 ----DMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166

Query: 324 VAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +A+ +     +  + +  ++ Y  LS       TP L    ++    +SC +    D   
Sbjct: 167 MALAVMQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTAE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A      +     G+G      R  G  +       QG  P+    N    A N+ 
Sbjct: 227 SIGIAEHIAYTMTCKQAGIGI-LLQTRSKGDGVRNKTIVHQGKTPYFACINTAVKA-NKQ 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+          ++++ L L       +++   M+    I + F++RV ++  W L
Sbjct: 285 QTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWML 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            S  +  +LH      +E  +E    +  R      + +SA  L +  L   +ETG  + 
Sbjct: 345 VSFKDAPELHKRMYGSYE-LFEVEYDRVMRNPGIKKKMVSARKLSKVFLKNRYETGRVYP 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--SSEETAVCNLG-------SINLLAHFA 612
            F D  N  +P +    + +SNLC EI L +        + N         ++  L+   
Sbjct: 404 FFTDNMNTHTPFED--TIWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSIV 461

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +   ++        + ++DNV+DI  +  E  KKS    R++G+G+      L     
Sbjct: 462 AGRVKPEEYEEVAYYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAHYLASNFT 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+SP+   +     E  S+    AS+ LA+ERG     + S +  G  P++      + 
Sbjct: 522 NYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLEDYSQEVDN 581

Query: 733 RDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                ++ T +  W +L K +K   G+R+S   A  P  + +     +  + P       
Sbjct: 582 I----VDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYPVR----- 632

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                                       +    K   GS+  +    + +  ++ +A+++
Sbjct: 633 ---------------------------ELKMFKKSPQGSVFFLAPDSEVIGDVYQSAWDV 665

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               +IE  +  QK+  QA S + Y+      ++ S K        A  +G+KT YY+ S
Sbjct: 666 PEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIYAHRLGMKTQYYMNS 725

Query: 906 R 906
           R
Sbjct: 726 R 726


>gi|325103986|ref|YP_004273640.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter
           saltans DSM 12145]
 gi|324972834|gb|ADY51818.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter
           saltans DSM 12145]
          Length = 548

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 169/629 (26%), Positives = 258/629 (41%), Gaps = 112/629 (17%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
                 QIL   Y L       E PQ    R+A   A +  + E  A  F  ++S     
Sbjct: 7   LNEESEQILNRGYLLKG-----ETPQKAIERIANAAAKRLYKPEL-AESFIEMISKGWMS 60

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            S+P   N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G 
Sbjct: 61  LSSPIWANMGTERGLPISCFNVHVPDHIEGITHKLGEVIMQTKTGGGTSGYFGELRARGT 120

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   NGKS G + F+K+ +     ++QGG R+GA  AYL+  H D++EFLD++      
Sbjct: 121 AVTD-NGKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIKEFLDIKNIG--- 176

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                ++     +PD +M+ + +                       E             
Sbjct: 177 -NPIQNLFFGVCVPDYWMQDMIEGDR--------------------EKR----------- 204

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEIT 589
                       +W K+L    + G P+I F D  N   P  +      +++SNLC+EI 
Sbjct: 205 -----------DVWAKVLECRQQKGLPYIFFSDNVNRFKPDVYKDKEMPIYASNLCSEIA 253

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
           L SS +E+ VC L S+NL        +D  K    +R A   LD V+       E     
Sbjct: 254 LPSSRDESFVCCLSSMNLE------LYDEWKDTGAVRLATFFLDAVMSEFIEKTEGNHYL 307

Query: 648 ----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
                    HRA+GLG+MG+ S L    I + S +A ++ +   + +   ++ AS ELA 
Sbjct: 308 QSANNFAKNHRALGLGVMGWHSYLQKNMIAFESLQAKQLTNTIFKDLQEKSLKASEELAN 367

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             G  S  KG                                           G RN+  
Sbjct: 368 IYGEPSLLKG------------------------------------------YGRRNATL 385

Query: 764 MAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           +A+APT + + I G  S  I+P   N Y      G+F   N +L   L+++ + +E    
Sbjct: 386 LAVAPTTSSSAILGQTSPGIEPYSSNYYKAGLAKGNFIRKNKYLRALLEEKGIDNEETWR 445

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +  + GS+ ++  +  + K I  T  E+    +I  AS RQK+IDQAQSLN+ +     
Sbjct: 446 TIMLNHGSVQHLTELTQEEKDIFKTFKELSQYEIILQASIRQKYIDQAQSLNINIPSNLP 505

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            K ++ +  +AW +G+KT YY RS+S + 
Sbjct: 506 IKDVNNLIIEAWKLGVKTLYYQRSQSVSK 534


>gi|167463293|ref|ZP_02328382.1| Ribonucleotide reductase alpha subunit [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 868

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 143/643 (22%), Positives = 265/643 (41%), Gaps = 61/643 (9%)

Query: 312 SRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +  + P   + R+A  +A  E    ++++   +F  +L  +  +        +       
Sbjct: 81  NIEKTPDEMWDRLAKAMASVEKTDAKRQEWTEKFRYILDEWKLVPGGRIAAGADASDELT 140

Query: 368 LSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++     D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 141 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 200

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  W+ D+ +F+ +++  G    +  + N +  I 
Sbjct: 201 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 256

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD     ++               +A   E+K +R + A  +W
Sbjct: 257 NSFMKAVKEDLDWELVFPDTTDPEYNEKWDG-----NLDAWKALGKEVKHYRTVRARDVW 311

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L +      VCNL ++N
Sbjct: 312 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 367

Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +   N+  D+++L   +R +VR LDNVID   +  E+ +K+    R IG+G MG  
Sbjct: 368 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 427

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L I Y SPE++E  D+   F++  A  AS E+A E+G++  F    + Q  F  +
Sbjct: 428 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 487

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +                   + E+ + +   GMRN   +  APT +   + G S  I+P
Sbjct: 488 MVA-----------------EFPEVGESISQNGMRNVTVITQAPTGSTGTMVGTSTGIEP 530

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   Y + +  G                  W +A                   ++L   
Sbjct: 531 YFAFEYFRQSRLGFDKQYVPIAQE-------WKDAHPD----------------EELPDY 567

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
             TA ++     I + +  Q+W+D + S       + + ++   +Y  A+ +G K     
Sbjct: 568 FITAMDLSAEDHIRAQAAIQRWVDSSISKTANCPADFTVEETKRLYELAFDLGCKGVTIY 627

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           R  S      ST K  + K  AV   +  S   + G  +S  +
Sbjct: 628 RDGSRDVQVLSTDKKDEEKKPAVEQMEITSEAAAFGDEASLNN 670


>gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
 gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
          Length = 830

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 148/631 (23%), Positives = 257/631 (40%), Gaps = 85/631 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ ++   +  + R+A  LA  ET+       FY  L  F F+ +      
Sbjct: 15  MKYRLKEADGTPVDRSVEDSWRRIARALAAVETDAAVWEDRFYAALEDFRFLPAGRITAG 74

Query: 361 SGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT R   L +CF+  TVPD++ GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTGRRVTLFNCFVMGTVPDNMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIGAK----SDPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +  W L                               + KV+ 
Sbjct: 191 FNMSVLVTDAFMEAVKADGSWDLLF-----------------------------DGKVYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TLKARDLWNRIMQATYDYAEPGVIFIDRINKANNLAYCETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL     +   D      + L   +RTA+R++DN +D +   +E   +     
Sbjct: 278 ACLLGSVNLARLVTDPFTDAARLDPEALDDLVRTAIRMMDNTVDASKFPLEAQAREAEAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S EA    +  M+ I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAAAQTEAWMKAIARAAYLASVDLAKEKGAFPLF-- 395

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                              RD    + T +   ++++  V   G+RN+   ++APT TI+
Sbjct: 396 ------------------DRDAYLASGTMQAMDEDVRAAVAEHGIRNALLTSVAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +++       +   M  D+K       
Sbjct: 438 LYAGNVSSGIEPVFAYEYTRKVLQKDGSRTEEKVID-------YAVQMWRDVKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L      A  + P+  ++  +  QKW+D + S  +    + S +    +Y +
Sbjct: 485 -----DAPLPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDISFEAFKDVYME 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           A+  G K     R    T    S  +     
Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEAKAAA 570


>gi|219681362|ref|YP_002456126.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia
           phage phiEa21-4]
 gi|199580629|gb|ACH89016.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia
           phage phiEa21-4]
          Length = 744

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 160/781 (20%), Positives = 295/781 (37%), Gaps = 78/781 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            +   DGT+  F+  RL    E A +    V    +  +  K  +DG + SDL+ A+I +
Sbjct: 4   NVKKSDGTVQPFDPSRLNRWAEWAAN--YGVDWSEIAVDAVKRCHDGCTTSDLQWAMIEA 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 +   +A +  R L+  + +E      K P       +   Y +     + E   
Sbjct: 62  CIDRQTQ--AHANMAGRLLIGNVYKEAFGGFRKIPT------LTDFYDKMRTLNLWE--- 110

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
                    D +L YL   + + +D  + Y  ++   D+Y +         E PQ  FM 
Sbjct: 111 ----DMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166

Query: 324 VAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +A+ +     +  + +  ++ Y  LS       TP L    ++    +SC +    D   
Sbjct: 167 MALAVMQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTAE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A      +     G+G      R  G  +       QG  P+    N    A N+ 
Sbjct: 227 SIGIAEHIAYTMTCKQAGIGI-LLQTRSKGDGVRNKTIVHQGKTPYFACINTAVKA-NKQ 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+          ++++ L L       +++   M+    I + F++RV ++  W L
Sbjct: 285 QTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWML 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            S  +  +LH      +E+    Y+R     +IK  + +SA  L +  L   +ETG  + 
Sbjct: 345 VSFKDAPELHKRMYGSYELFEVEYDRVMRNPDIKK-KMVSARKLSKVFLKNRYETGRVYP 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--SSEETAVCNLG-------SINLLAHFA 612
            F D  N  +P +    + +SNLC EI L +        + N         ++  L+   
Sbjct: 404 FFTDNMNTHTPFED--TIWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSIV 461

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
             +   ++        + ++DNV+DI  +  E  KKS    R++G+G+      L     
Sbjct: 462 AGRVKPEEYEEVAYYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAHYLASNFT 521

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y+SP+   +     E  S+    AS+ LA+ERG     + S +  G  P++      + 
Sbjct: 522 NYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLEDYSQEVDN 581

Query: 733 RDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                ++ T +  W +L K +K   G+R+S   A  P  + +     +  + P       
Sbjct: 582 I----VDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYPVR----- 632

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                                       +    K   GS+  +    + +  ++ +A+++
Sbjct: 633 ---------------------------ELKMFKKSPQGSVFFLAPDSEVIGDVYQSAWDV 665

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               +IE  +  QK+  QA S + Y+      ++ S K        A  +G+KT YY+ S
Sbjct: 666 PEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIYAHRLGMKTQYYMNS 725

Query: 906 R 906
           R
Sbjct: 726 R 726


>gi|291614699|ref|YP_003524856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sideroxydans lithotrophicus ES-1]
 gi|291584811|gb|ADE12469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sideroxydans lithotrophicus ES-1]
          Length = 981

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 159/670 (23%), Positives = 271/670 (40%), Gaps = 83/670 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPT 357
           ++L ++Y            Q    RVA GLA  ET  +  +  E + L     F+ +   
Sbjct: 49  EVLLEKYAEADEK----SVQDVRRRVARGLAQAETPEQRAKWEEAFFLAQENGFVPAGRI 104

Query: 358 LFNSG-TRHPQLSSCFLTTV-------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
              +G      L +CF+  V        D   GI+ ALQ+ A   +  GG+G D++ +R 
Sbjct: 105 NSAAGLKIQATLINCFVQPVGDAISGTNDGKPGIYDALQQAAETMRRGGGVGYDFSSIRP 164

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GAH+ GTN ++ G I +++V + +   V   G R+GA    L   H D+E+F+  +   
Sbjct: 165 EGAHVKGTNSRASGPISYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEKFISAK--- 221

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D+    + N +  + D  M+ V ++  + L    E S                 E  A
Sbjct: 222 --DQGDLRNFNISVGVTDALMQAVEKDEEFELVHSAEPST-------------AIKEAGA 266

Query: 530 DRGE--IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            R E    ++RK+ A  LW++++   ++   P + F D  N  +   +  ++ ++N C E
Sbjct: 267 TRREDGKWIYRKVRATDLWKQIIASTYDHAEPGVLFIDLMNRDNNLSYCEIIEATNPCAE 326

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHT 642
             L         C LGSI+L     N       FDY+     +R AVR+LDNV+D+    
Sbjct: 327 QPLPPY----GCCCLGSIDLTRMVKNPFSKHAGFDYEPFKQLVRVAVRMLDNVLDVTAWP 382

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + + ++     R IGLG  G   AL ++ + Y +  A   A +    +   A  ASV+LA
Sbjct: 383 LPEQQQEAKNKRRIGLGFTGLGDALVMMGLRYDTDAARAFASDITRIMRDEAYLASVDLA 442

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            ERG +       +                   L+  R +    DE+K +++  G+RNS+
Sbjct: 443 VERGKFPLLDADKY-------------------LSAPRFASRLPDEIKDKIRKHGIRNSH 483

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
            ++IAPT TI+       S  I+P++   Y +     D T  +  +           +  
Sbjct: 484 LLSIAPTGTISLAFADNASNGIEPAFSWFYTRKKRMMDGTTKDYPVE----------DHA 533

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
               K   G + ++            TA EI  +  ++  +    +ID + S  + +  +
Sbjct: 534 WRVFKQQGGDVSHLP-------PSFVTALEISAIDHMKMVAAVAPYIDTSISKTVNVPAD 586

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDGKLNAVPVTDPNSSTHS 937
              +    +Y +AW  GLK     R  S      S  T K  D   + V   D      +
Sbjct: 587 YPYEDFKDLYTEAWKAGLKGLATYRPNSVLGSVLSVTTEKKEDQPQDFVFDQDRRIVLEA 646

Query: 938 LGIPSSCTSD 947
              P+  +  
Sbjct: 647 TPNPALASLR 656


>gi|83313545|ref|YP_423809.1| ribonucleotide reductase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82948386|dbj|BAE53250.1| Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 781

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 147/635 (23%), Positives = 253/635 (39%), Gaps = 83/635 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             Q  + RVA  LA  E +       F+  +  F  + +   +  +GT     L +CF+ 
Sbjct: 29  TIQDTWRRVARSLAAAEADPALWEERFFEAMEDFKLLPAGRIISGAGTDRRVTLFNCFVM 88

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             +PDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 89  GDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDA 148

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F+D ++    +  R    N +  + D FM+ V
Sbjct: 149 MCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKR----EAGRLRMFNLSVLVTDPFMQAV 204

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  W L                               +   ++ + A  LW K++   
Sbjct: 205 KEDGPWELTF-----------------------------KGVTYKSLPARELWNKIMRAT 235

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           +    P + F D  N  +   +   +H++N C E  L +      VC LGS+NL      
Sbjct: 236 YSYAEPGVIFIDRINRLNNLSYCEEIHATNPCGEQPLPAY----GVCLLGSLNLARLVDR 291

Query: 614 NQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   D D+L   +R AVR++DNVID++ + +E+ +      R IGLG+ G   AL 
Sbjct: 292 PFEDGARLDLDQLDRLVRVAVRMMDNVIDVSNYPLERHRHEAQAKRRIGLGITGLADALI 351

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L    Y   +A+ + +  M  I   A  AS ELA+E+GA+  +    +  G         
Sbjct: 352 LCGARYGGAQAIRLTETWMAAIRRSAYLASTELAKEKGAFPLYDAEKYLAG--------- 402

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQ 787
                       T +    ++ + ++  G+RN+   +IAPT TI+     VS  ++P + 
Sbjct: 403 -----------ETIQSLDSDVIEAIRANGIRNALLTSIAPTGTISLFADNVSSGLEPVFA 451

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +                 L++     E  +SD  Y        E  P  L      
Sbjct: 452 FTYTRGV---------------LQKDGTRREEEVSDYAYRLFRRQRGENAP--LPSYFVD 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P   +   +  QK++D + S  + +  + S +    +Y+QA+ +G K     R  
Sbjct: 495 ALSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFESFKDVYQQAYDLGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             T       K    +    P      +      P
Sbjct: 555 DVTGAVLEVKKEARPENADEPELPLEKAQVKHSDP 589


>gi|20090518|ref|NP_616593.1| ribonucleotide reductase [Methanosarcina acetivorans C2A]
 gi|19915544|gb|AAM05073.1| ribonucleotide reductase [Methanosarcina acetivorans C2A]
          Length = 558

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 152/596 (25%), Positives = 266/596 (44%), Gaps = 90/596 (15%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  ++  E E     +EF +L+    F+ S+PTL N+GT   QL++CF+  V D +  
Sbjct: 37  RVARAISTDEDE----YLEFKDLMVRKIFVPSSPTLMNAGTELGQLAACFVVPVKDSVEE 92

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           IF AL+  A++ K  GG G +++ VR  G+H    +G + G I F+++ N+    + Q G
Sbjct: 93  IFDALKTAALIQKTGGGSGFNFSRVRPKGSHALCVDGVASGPISFMRLFNEATEVIKQFG 152

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R+GA    L+  H D+  F+  +   G       + N +  + D F + V   +   ++
Sbjct: 153 RRRGANIGILDVSHDDIIPFIRAKHVEGS----FRNFNLSVMVRDAFFRLVEAGSTEEVW 208

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P   +                                    ++ +++  ++  G P + 
Sbjct: 209 NPRTGAT--------------------------------VGDVFSEIVEGIWRNGEPGVL 236

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           F D  N  +    +G + ++N C E  L         CNLGS+NL    A+ + ++D L 
Sbjct: 237 FYDRINRDNFTPGLGDITATNPCGEEPLLPY----ESCNLGSLNLSLFVADGKINWDFLR 292

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            T   AVR LDN IDIN + + +  ++    R IGLG+MGF   L  L + Y S EAVE+
Sbjct: 293 ETAGKAVRFLDNEIDINVYPVPEIAEATRKTRKIGLGVMGFHDMLLKLGLSYDSTEAVEL 352

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           A++ ME I++ A+  S +LA E+G +  ++ S+W+                         
Sbjct: 353 AEKLMEQINWAAVRESRKLAAEKGPFPEYEKSIWELS----------------------- 389

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801
                          MRN+   AIAPT TI+ + G S  I+P +  +Y +   +  +F +
Sbjct: 390 ---------------MRNATLTAIAPTGTISILAGCSAGIEPVFSWVYRRTRTVGKEFLL 434

Query: 802 VNSFLVNELKQRDLWDE--AMISDLKYHDGSIGNIER---IPDDLKKIHATAFEIDPMWL 856
           V+       K R    +   ++  + Y  G++ +I+    +P++ KK+  +A +I     
Sbjct: 435 VHPLFEAHFKPRLSESDYNELLEHV-YAHGTLQDIDDPEIVPENEKKLFRSALDIGWKTH 493

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           I+  +  Q+      S  + +  +   + ++     AW  GLK     R+ S   V
Sbjct: 494 IDIQAAFQRHCHAGISKTINMPVDAGKEDIEQALIYAWKQGLKGITIYRTGSRQYV 549


>gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
 gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
          Length = 822

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 147/655 (22%), Positives = 254/655 (38%), Gaps = 85/655 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ I+   +  + R+A  LA  E + +    +FY  L+ F ++ +      
Sbjct: 15  MKYRLKEGDGTPIDASVEDTWARIAKSLASVEKDPKAWEPKFYKALNDFRYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTDRSVTLFNCFVMGTIPDTMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAVVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DV +F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVMDFITAK----SDAARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  +  W L                               + +V R
Sbjct: 191 FNMSVLITDPFMEAVKADTPWDLIW-----------------------------DGEVVR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW  ++   +    P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQARDLWDSIMQSTYSHAEPGVIFIDRINTMNNLNYVETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL              D ++L   +  AVR++DNV+D +   +E   +     
Sbjct: 278 ACLLGSINLARLVLNPFADAATIDDNELTELVGLAVRMMDNVVDASKFPLEAQAQEAVAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +  + Y SPEA    +  M+ I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMTGLRYGSPEAARQTEHWMKAIARAAYLASVDLAREKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                              ++++  ++  G+RN+   ++APT TI+
Sbjct: 398 DKYLASGNM--------------------MQMDEDVRDAIREHGIRNALLTSVAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   M  DLK       
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVKMWRDLKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  +  M  +   +  QKW+D + S  + +  +   +    +Y  
Sbjct: 485 -----DAELPDYFVNAQTLPAMDHVRMQAAAQKWVDSSISKTINVPEDIDFQSFKDVYMA 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           AW  G K     R    T         V+   + +       S     +  +   
Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLCVGVSVETFGDRLKKKRSEMSLTQKELADAANI 594


>gi|146966|gb|AAA24223.1| ribonucleoside diphosphate reductase B1 subunit precursor
           [Escherichia coli]
          Length = 776

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 150/652 (23%), Positives = 258/652 (39%), Gaps = 35/652 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++   ++              LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKATASLRPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + VA  L      +  +    FY+ +S+F     TP +    T   Q SSC L    D L
Sbjct: 174 ILVAACLFSNYPREGLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSL 233

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK--VANDTAVAV 438
             I               G+    +        +       + +    +     D+  + 
Sbjct: 234 DSINATSSAIVKYVSQRAGIA---STPGVFVRWVARFAVVKRSIPAAFRSTTFPDSGESC 290

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           ++    +     +   WH++VE  L L+ N G +  R   M+    I  L   R+ +   
Sbjct: 291 SRRCAGRRCGNVFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 350

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L+D +    +EFE  Y  YE+     +    +++ AV L+  M+     
Sbjct: 351 ITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAS 406

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D C   SP       V  SNLC EI L +          G I L       
Sbjct: 407 TGRIYIQNVDHCITHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 466

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
                + D+L      AVR LD ++D   + I  AK+     R +G+G++ F   L    
Sbjct: 467 LGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 526

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+   +  
Sbjct: 527 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKIWI 586

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                    T +L   + K+ V           A+ P+ T + I   +  I+
Sbjct: 587 PSLMSRCITTGKLCVSQSKRTVCVT----PTLSALMPSETSSQISNATNGIE 634


>gi|31791752|ref|NP_854245.1| ribonucleoside-diphosphate reductase large subunit NrdZ
           [Mycobacterium bovis AF2122/97]
 gi|121636488|ref|YP_976711.1| putative ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988960|ref|YP_002643647.1| putative ribonucleoside-diphosphate reductase large subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617338|emb|CAD93447.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ
           (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium bovis
           AF2122/97]
 gi|121492135|emb|CAL70600.1| Probable ribonucleoside-diphosphate reductase (large subunit) nrdZ
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772073|dbj|BAH24879.1| putative ribonucleoside-diphosphate reductase large subunit
           [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 710

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 178/753 (23%), Positives = 295/753 (39%), Gaps = 132/753 (17%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202
           K+   DGTL+ F+  R+E  V  A   +      +   V       +  G++  +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I                 AR                   +A   ++  +Y          
Sbjct: 64  IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320
                 +       +L   A  L   RD        + +L +RY LH   G   E     
Sbjct: 85  ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137

Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             R A  +A  E + E       A  F  LL +  F+ ++PTL NSGT    L+ CF+  
Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A
Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +
Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    L +P                              K+  ++ A  L+  +      
Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
            G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ +
Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            D+D+L      AVR LD+VID++ +   +  ++    R IGLG+MG    L  L IPY 
Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYD 463

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + +                 
Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                  RN+   ++APT TI+ I G +  I+P +   + ++ +
Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
                 VN       + R  + + +I+++    G +    R+P +++    TA EI P W
Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606

Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888
            +   +  Q+ ++ A S  + L   +G+ +   
Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLP-ATGRSMTSA 638



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V       +    D+   + +     L +    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++       +   L
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111


>gi|307352276|ref|YP_003893327.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
           [Methanoplanus petrolearius DSM 11571]
 gi|307155509|gb|ADN34889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoplanus petrolearius DSM 11571]
          Length = 566

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 156/608 (25%), Positives = 262/608 (43%), Gaps = 92/608 (15%)

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
               RVA  +A    E      E+++++++  F+ ++PTL N+GT   QL++CF   V D
Sbjct: 24  ELCRRVAGAIADSPEE----EAEYFDMMNTLRFLPNSPTLMNAGTDMNQLAACFTLYVGD 79

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            +  IF A++  AM+ K  GG G +++ +R  GA +  + G + G + F+K  +     +
Sbjct: 80  SITEIFDAMKWGAMIHKSGGGTGYNFSNIRPEGAFVESSEGVASGPVSFMKAFDAVTGVI 139

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QGG+R+GA    L   H D+ +F++ +   GD      + N +  + D FM  V     
Sbjct: 140 RQGGRRRGANMGILNVDHPDILKFINSKTREGD----IANFNISVMVTDRFMGLVEAG-- 193

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                              F+  +   E  A         +I+   +W  +   ++  G 
Sbjct: 194 ------------------RFDRVWITREETA--------EEITVGDIWNGITEGIWRNGE 227

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFD 617
           P + F D  N ++    +G ++++N C E  L         C LGSINL        + D
Sbjct: 228 PGLLFYDEINRKNMTPALGNINATNPCGEQPLLPF----ESCVLGSINLSKFIDEKGETD 283

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              L  TIRTAV+ LD +ID N + I + +++    R +GLGLMG   AL +  IPY SP
Sbjct: 284 LASLEKTIRTAVKFLDRIIDKNRYPIPEIEEATKRTRKVGLGLMGVHDALIMRRIPYDSP 343

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E  +     M+F++  A+S S  LA+E+G + ++KGS+W                     
Sbjct: 344 EGRKYCGSIMQFVAETAVSESGRLAEEKGPFPAWKGSVW--------------------- 382

Query: 738 MNRTSRLPWDELKKRVKTIG--MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                           +  G  +RN+    IAPT +I+ I   S  I+P +   Y + N 
Sbjct: 383 ----------------EKNGKMVRNAALTTIAPTGSISIIAECSSGIEPVFSYSYTRMNT 426

Query: 796 SGD-FTVVNSFLVNELK----QRDLWDEAMISDL------KYHDGSIGNIERIPDDLKKI 844
           +G+ F +V+     EL+    +     E     +       +  G++ +I  +PD   KI
Sbjct: 427 AGESFRMVHPLFKKELETVAGKLFPNPEERERRVGEVLSHVHETGTVQDIGWLPDSFTKI 486

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYL 903
             TA +I     I   +  Q+ +  + S  + +   S K ++      AW   LK     
Sbjct: 487 FTTALDIRWRDHILMQAAFQEHVHASISKTINMPGTSTKNEISEALLFAWRCRLKGITIY 546

Query: 904 RSRSATSV 911
           R+ S    
Sbjct: 547 RTSSRKDA 554


>gi|260574979|ref|ZP_05842981.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
 gi|259022984|gb|EEW26278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
          Length = 761

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 153/632 (24%), Positives = 252/632 (39%), Gaps = 84/632 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + RVA  LA  E +       FY  L  F F+ +      +GT     L +CF+ 
Sbjct: 30  TIEDSWRRVARALAEVEAKPALWEDRFYAALEGFKFLPAGRITAGAGTGRTVTLFNCFVM 89

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+PD++ GIF +L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 90  GTIPDNMAGIFESLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H DVE F++ +K    D  R    N +  I D FM  V
Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDVEAFIEAKK----DPARLRMFNLSVLITDAFMAAV 205

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +  W L   D                             KV++   A  LW +++   
Sbjct: 206 KADGPWELCFGD-----------------------------KVYKTCQARDLWNRIMRNT 236

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +V  + ++N C E  L         C LGSINL    +N
Sbjct: 237 YDFAEPGVIFIDRINAMNNLAYVETIAATNPCGEQPLPPY----GACLLGSINLATLVSN 292

Query: 614 NQFDYDKLAST-----IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  L        +RTAVR++DNV+D +   + +        R IGLG+ G   AL 
Sbjct: 293 PFAANAALDLAALDELVRTAVRMMDNVVDASRFPLPEQAVEAQAKRRIGLGVTGLADALL 352

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y S  A    +  M+ I+  A  ASV+LA+E+GA+  F    +            
Sbjct: 353 MLRLRYGSDAAAAQTEAWMQAIARAAYLASVDLAREKGAFPLFDAEKY------------ 400

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787
                     + T R    +++  ++  G+RN+   +IAPT TI+   G  S  I+P + 
Sbjct: 401 --------LASGTMRQMDGDVRDAIRKHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +  +  D +     +V+   +  LW E                      L      
Sbjct: 453 YAYSRKVLQKDGSRTEEEVVDYAVR--LWRETHGD----------------APLPDYFVN 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P+  +   +  QKW+D + S  +    + S      +Y  AW  G K     R  
Sbjct: 495 AQTLPPLDHVWMQAAAQKWVDSSISKTINCPEDISFDDFQQVYMAAWDQGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           + T    +  +  D   +  P     ++  + 
Sbjct: 555 AVTGSVLTVSEASDKTPSEAPALVNANADGAE 586


>gi|73671045|ref|YP_307060.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro]
 gi|72398207|gb|AAZ72480.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro]
          Length = 561

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 280/639 (43%), Gaps = 92/639 (14%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
                +E++   + L  + L  RY      +     +    RVA  +AL + E     ++
Sbjct: 5   DEIFVWEKEVELDILVSETLKARYLHEGENN----WEDICERVAEAVALTDEE----YLD 56

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F +L+    F+ S+PTL N+GT   QL++CF+  V D +  IF +++  A++ K  GG G
Sbjct: 57  FKDLMLRKVFLPSSPTLMNAGTEFGQLAACFVIPVEDKVEEIFDSIKAAALIQKTGGGTG 116

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D++ +R  G+     +  + G +  +K+ N+    V Q G+R+GA    L+  H D+  
Sbjct: 117 FDFSKIRPEGSSNSCGDDATSGPVAVMKLFNEATEIVKQFGRRRGANMGILDISHNDILS 176

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  +   G+      + N +  +PD FM+ V                         + A
Sbjct: 177 FIRSKHVEGE----LSNFNISVMVPDAFMELVEA-----------------------DKA 209

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E + RQ D    +         ++ +++  ++  G P I F D  N  +    +G + +
Sbjct: 210 DEVWNRQTDVTVGR---------IFSEIVEGIWRNGEPGILFYDRINRDNFTPALGDISA 260

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           +N C E  L         CNLGSINL     + + ++D L      A+R LDN ID N +
Sbjct: 261 TNPCGEEPLLPF----EACNLGSINLSLCVIDGKVNWDFLREVAGKAIRFLDNEIDKNAY 316

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + + + +    R +GLG+MG    L  + +PY S EA+E+A++ ME I++ +I  S +L
Sbjct: 317 PVPEIETATKRTRKVGLGVMGLHDMLLKIGLPYDSQEALELAEKLMEQITWASIRESRKL 376

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A E+G++  ++ S W+                                        MRN+
Sbjct: 377 AVEKGSFPGYEDSTWELP--------------------------------------MRNA 398

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELK-QRDLWDEA 819
              A+APT TI+ + G S  I+P +  +Y ++   G +F +V+ F     K +    D +
Sbjct: 399 ALTAVAPTGTISILAGCSAGIEPVFSWVYRRTQTVGREFMLVHPFFKAHFKSKLSEADYS 458

Query: 820 MISDLKYHDGSIGNIER---IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            + +  Y  G++ ++E    + ++ K++  +A +ID    I+  +  Q+      S  + 
Sbjct: 459 WLLEHVYKYGTLQDVENPELVSEEEKQLFRSALDIDWKAHIDMQAAFQRHCHAGISKTIN 518

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +      + +D     AW  GLK     R+ S   V  S
Sbjct: 519 MPASAGKEDIDKALVYAWKQGLKGLTIYRTGSRQYVVLS 557


>gi|254449519|ref|ZP_05062956.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198263925|gb|EDY88195.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 753

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 151/640 (23%), Positives = 253/640 (39%), Gaps = 85/640 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ I+   +  + R+A  LA  E + +    +FY  L+ F ++ +      
Sbjct: 15  MKYRLKEGDGTPIDISIEDTWARIAKSLASVEKDPKAWEPKFYEALNDFRYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  T+PD + GIF AL+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTDRSVTLFNCFVMGTIPDTMGGIFDALREAALTMQQGGGIGYDFSTIRPKGAVVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE+F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK----SDAARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  +  W L    E                               R
Sbjct: 191 FNMSVLITDPFMEAVKADKPWNLVWAGET-----------------------------VR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A ALW  ++   +    P + F D  N  +   +V  + ++N C E  L        
Sbjct: 222 TVQARALWDSIMQSTYSHAEPGVIFIDRINTMNNLNYVETIAATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL    +N        D  +LA  +  AVR++DNV+D +   +E   +     
Sbjct: 278 ACLLGSINLARLVSNPFTDTATIDDAELAELVGLAVRMMDNVVDASKFPLEAQAREAAAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +  + Y S +A    +  M+ I+  A  +SV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMTGLRYGSEDAARQTEAWMKAIARAAYLSSVDLAREKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                              D+++  ++  G+RN+   ++APT TI+
Sbjct: 398 DKYLASGNM--------------------MQMDDDVRDAIREHGIRNALLTSVAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V+       +   M  DLK       
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVKMWRDLKG------ 484

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +L      A  +  M  +   +  QKWID + S  + +  +   +    +Y  
Sbjct: 485 -----DAELPDYFVNAQTLPAMDHVRMQAAAQKWIDSSISKTINVPEDIDFQSFKDVYMA 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           AW  G K     R    T    S       ++ A      
Sbjct: 540 AWDQGCKGCTTYRPNEVTGSVLSVSGDTKPEVIADENAGD 579


>gi|226940518|ref|YP_002795592.1| NrdE [Laribacter hongkongensis HLHK9]
 gi|226715444|gb|ACO74582.1| NrdE [Laribacter hongkongensis HLHK9]
          Length = 947

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 154/636 (24%), Positives = 254/636 (39%), Gaps = 74/636 (11%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381
           RVA  LA +E E  + A  FY       F+        +GT     L +CF+  V D + 
Sbjct: 37  RVAAALAGQEQEPSRHAESFY-WAMEQGFIPGGRINSAAGTELSATLINCFVQPVGDSVS 95

Query: 382 -------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
                  GI+ AL + A   +  GG+G ++T +R  GA + GTN ++ G + +++V + +
Sbjct: 96  ETRDGKVGIYEALLQAAETMRRGGGVGYNFTRIRPKGARVKGTNSRASGPVSYMRVFDRS 155

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G R+GA    L+  H D+E F+  +     D     + N +  + D FM+ V 
Sbjct: 156 CETVESAGARRGAQMGVLDCDHPDIESFIHAK-----DAGDLRNFNISVGVSDAFMQAVE 210

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W L   +E                E  +         V+R + A  LW +++   +
Sbjct: 211 ADGSWELVHKEE------------PDRKEFPDACQRADGKWVYRAVRARDLWNQIMESTY 258

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           +   P + F    N  +   +  V+ S+N C E  L     +   C+LGSINL     + 
Sbjct: 259 DHAEPGVLFMSKINRDNNLSYCEVIESTNPCGEQPLP----DYGCCDLGSINLTRFVRDP 314

Query: 615 Q-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 FD+      +R +VR+LDNV+D+    + + ++   + R IGLG  G   AL +
Sbjct: 315 FTAKAGFDFATFDKVVRQSVRMLDNVLDLTVWPLPEQQREAQSKRRIGLGFTGLGDALIM 374

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L I Y+S      A    E +   A  ASV+LA E+GA+  F    +             
Sbjct: 375 LTIKYSSDAGRAFAARVSEAMRNSAYDASVDLAIEKGAFPLFDADQY------------- 421

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQ 787
                 LA    +     E+K R+K  G+RNS+ ++IAPT TI+       S  I+P + 
Sbjct: 422 ------LAEPHCASRLPKEIKARIKKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +     D T    + V +   R           +   G + ++            +
Sbjct: 476 WFYTRKKRMADGTQ-QEYRVEDHAYRVY---------RELGGDVSSLP-------DYFVS 518

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A E+  +  +   +    +ID A S  + +  +      + +Y +AW  GLK     R  
Sbjct: 519 ALEMSALDHMSMVAAVAPFIDTAISKTVNVPADYPFADFESLYIEAWRAGLKGITTYRPN 578

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           S      S     +   +  P  DP+        P 
Sbjct: 579 SVLGSVLSVEPTRETPADLPPSDDPDRRIALNKTPE 614


>gi|23015529|ref|ZP_00055302.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 775

 Score =  331 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 148/635 (23%), Positives = 254/635 (40%), Gaps = 83/635 (13%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +  + RVA  LA  E E       F+  +  F  + +   +  +GT     L +CF+ 
Sbjct: 29  TIEDTWRRVARSLAATEAEPAVWEQRFFESMEDFKVLPAGRIISGAGTDRKVTLFNCFVM 88

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             +PDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V + 
Sbjct: 89  GDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDA 148

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               +   G R+GA+ A +   H D+E F+D ++    +  R    N +  + D FM+ V
Sbjct: 149 MCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKR----EAGRLRMFNLSVLVTDPFMQAV 204

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            ++  W L                               +   ++ + A  LW K++   
Sbjct: 205 KEDGPWELTF-----------------------------KGVTYKSLPARELWNKIMRAT 235

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           +    P + F D  N  +   +   +H++N C E  L +      VC LGS+NL      
Sbjct: 236 YSYAEPGVIFIDRINRLNNLSYCEDIHATNPCGEQPLPAY----GVCLLGSLNLARLVDR 291

Query: 614 NQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                   D DKL   +R AVR++DNVID++ + +++ +    + R IGLG+ G   AL 
Sbjct: 292 PFEDGARLDLDKLDRLVRVAVRMMDNVIDVSNYPLDRHRHEALSKRRIGLGITGLADALI 351

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L    Y   EA+ + +  M  I   A  AS ELA+E+GA+  +    +  G         
Sbjct: 352 LCGARYGGREAIRLTETWMAAIRRSAYLASAELAREKGAFPLYDAEKYLAG--------- 402

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQ 787
                       T +    ++ + ++T G+RN+   +IAPT TI+     VS  ++P + 
Sbjct: 403 -----------ETIQGLDSDVIEAIRTHGIRNALLTSIAPTGTISLFADNVSSGLEPVFA 451

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
             Y +                 L++     E  +SD  Y       +      L      
Sbjct: 452 FTYTRGV---------------LQRDGTRREEEVSDYAYRL--FRRLRGENAPLPTYFVD 494

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A  + P   +   +  QK++D + S  + +  + S      +Y QA+ +G K     R  
Sbjct: 495 ALSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFDAFKDVYTQAYELGCKGCTTYRPN 554

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             T       K    + +A P      +      P
Sbjct: 555 DITGSVLEVKKEARPEDDAEPELPLEKTRTRYTDP 589


>gi|73748165|ref|YP_307404.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
 gi|73659881|emb|CAI82488.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1]
          Length = 585

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 156/635 (24%), Positives = 259/635 (40%), Gaps = 77/635 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFY 343
                    +L  RY     +GS  E P+  F RVA  +A  E            A EFY
Sbjct: 1   MKLSGNAKIVLEKRYLKRDGDGSITESPEDMFRRVADAVAAAENAYNQQGKAACWADEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +++   F+ ++PTL N+G     LSSCF+  V D + GI  A+ E  ++ +Y GG G  
Sbjct: 61  RMMTGLEFLPNSPTLLNAGRELGLLSSCFVLPVEDSVEGIAKAIGEAMIIHQYGGGTGFA 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R     I   +  + G +  + V ++ A  + Q G R G   A L   H D+ +F+
Sbjct: 121 FDTIRPEDTPIKSGHNVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    D+   + +      + D F+++V +   + L +P                   
Sbjct: 181 RAK----DEGNHSANFGINIALTDSFIQKVRRGEDYELINPRT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++
Sbjct: 220 ----------GEVTGSLSASDVFYRIAQSAWETGDPGIMFIDRINKDNPTPQLGEFVTTD 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C    L      T      S+  L        DY +L   I  A+R LD+V+++N + I
Sbjct: 270 PCGGQPLLPYESATLGTINLSLMALKEGNCFGVDYLRLGKLIAKAIRFLDDVLEVNRYPI 329

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +++    R IGLG MGF   L  L I Y S +AV +AD  M F++     AS ELA 
Sbjct: 330 PEVERAAKATRKIGLGFMGFAEMLIKLGIRYDSEQAVSLADRLMTFVNETVNKASEELAL 389

Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           ERG++ +F G+++ + G  P                                    RN+ 
Sbjct: 390 ERGSFPAFAGNIYAKSGAKP-----------------------------------RRNAT 414

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821
           C+    T T + I   S  I P Y  + V++ + G     +N       ++R  ++  +I
Sbjct: 415 CLTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHTFEETARERGFFNPVLI 474

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             L   + S  N   IP D +++  TA +I P W I   +  QK  D A S  +      
Sbjct: 475 EKLLTGE-SPQNCPEIPRDYRRLLVTARDIQPEWCIRVQAAFQKHTDNAISQTVNFPKSA 533

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           + + +  ++ ++  +GLK     R  S       T
Sbjct: 534 TVEDIAELFLKSHELGLKGVTAYRDSSRDVQVLCT 568


>gi|86136293|ref|ZP_01054872.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           MED193]
 gi|85827167|gb|EAQ47363.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp.
           MED193]
          Length = 765

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 150/657 (22%), Positives = 254/657 (38%), Gaps = 84/657 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
               F   +G+ I+   +  + R+A  LA  E        +FY  L  F ++ +      
Sbjct: 15  MKYRFKEADGTPIDVTVEDSWRRIARDLARAEDNPGVWEEKFYEALEDFKYLPAGRITAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H DVE F+  +     D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEAFITAK----SDSARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  +  W L                               + K++ 
Sbjct: 191 FNMSVLISDAFMEAVKADGSWELQF-----------------------------DGKIYH 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K++   ++   P + F D  N  +   ++  + ++N C E  L        
Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSIN+    +N        +   +   + TAVR++DNV+D++   +E         
Sbjct: 278 ACLLGSINMARLVSNPFESNAELNQSAMQELVATAVRMMDNVVDVSKFPLEAQAAEAQAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +L + Y S  A    D  +  I+  A  ASV+LA+E+GA+  F  
Sbjct: 338 RRIGLGVTGLADALLMLGLEYGSDAAARQTDRWLHAIARAAYLASVDLAKEKGAFPLFDA 397

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +                              +++++ ++  G+RN+   +IAPT TI+
Sbjct: 398 EAYLASGNM--------------------MNMDEDVREAIREHGIRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P +   Y +  +  D +     +V          +  +   +   G+  
Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVV----------DYAVQMYREKFGTDA 487

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
            +             A  + P   ++  +  QKWID + S  +    + S  +   +Y Q
Sbjct: 488 ALPG-------YFVNAQTLPPAAHVKMQAAAQKWIDSSISKTINCPEDISFDEFKDVYMQ 540

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R    T    S  +  D            S     G      S+ 
Sbjct: 541 AWDQGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHESDMGENGAEVVYMSEP 597


>gi|211638142|emb|CAR66768.1| ribonucleoside-diphosphate reductase 1 subunit alpha (ec 1.17.4.1
           (ribonucleoside-diphosphate reductase 1 r1 subunit)
           (ribonucleotid reductase 1) (b1 protein) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
          Length = 626

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 163/656 (24%), Positives = 259/656 (39%), Gaps = 57/656 (8%)

Query: 289 RDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYN 344
           RD  F Y  ++ L  +Y     + G   E  Q  ++ VA  L     +  +      FY+
Sbjct: 2   RDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSSYPKETRLDYIRRFYD 61

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S+F     TP +    T   Q SSC L    D L  I               G+G + 
Sbjct: 62  AVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDSLDSINATSSAIVKYVSQRAGIGINA 121

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G+ I        G IPF K       + +QGG R GA   +   WH++VE  L 
Sbjct: 122 GRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPLWHLEVESLLV 181

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIA 521
           L+ N G +  R   M+    +  L  +R+ +    TLFSP +V  L+D +     EFE  
Sbjct: 182 LKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGEDITLFSPSDVPGLYDAFFTNQDEFERL 241

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-GVVH 580
           Y  YE+ ++       +++ AV L+  M+     TG  +I   D CN  SP       V 
Sbjct: 242 YTKYEQDSNIR----QQRLKAVDLFSLMMQERASTGRIYIQNVDHCNTHSPFDPSVAPVR 297

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQFDYDKLASTIRTAVRVLDNVID 637
            SNLC EI L +          G I L            + D+L      AVR LD ++D
Sbjct: 298 QSNLCLEIALPTKPLNDINDKNGEIALCTLSAFNLGAIENLDELEELAILAVRALDALLD 357

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
              + I  AK+     R +G+G++ +   L      Y+   A  +  ++ E I ++ + A
Sbjct: 358 YQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHGARYSDGSANNLTHKTFEAIQYYLLKA 417

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S ELA+E+GA   FK + + QG+ PID+     +       N      W+ L+  +K  G
Sbjct: 418 SNELAKEQGACPWFKETTYSQGILPIDTYKKTLD----TLTNEPLHYDWETLRSDIKQYG 473

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS   ++ P+ T + I   +  I+P    + +K++  G    V              D
Sbjct: 474 LRNSTLSSLMPSETSSQISNATNGIEPPRGYISIKASKDGILRQVVPEYERLKG-----D 528

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
             ++  +  +DG +                                QK+IDQ+ S N   
Sbjct: 529 YELLWQMPGNDGYLQ--------------------------LVGIMQKFIDQSISANTNY 562

Query: 878 DEP-------SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           D            +L      A+  G+KT YY  +R      +  L+ V    ++ 
Sbjct: 563 DPARFPSGKVPMNQLLKDLLLAYKYGVKTLYYHNTRDGAEDVQDDLEEVVESADSD 618


>gi|154508381|ref|ZP_02044023.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798015|gb|EDN80435.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC
           17982]
          Length = 718

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 174/742 (23%), Positives = 301/742 (40%), Gaps = 81/742 (10%)

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           +     +L+   + +   L +   +      R    +   +     +        H+++ 
Sbjct: 11  EEAPSPELDYHALNAQLNLYDANGHIQFDADRAAARQYFLQ-----HVNQNTVFFHDLE- 64

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
              E     ++EG   + + +     D+  L       +     +LG    Y  Y L   
Sbjct: 65  ---EKLKYLVDEGYYEKHVLDQYDFADIKELYKQAYAHKFRFPTFLGAFKYYTSYTLKTF 121

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQ 367
           +G R  E  +    RVAM          + A  F + + +  F  +TPT  N+G     +
Sbjct: 122 DGKRYLERFED---RVAMVSLYLARGDIELARSFVDEIMTGRFQPATPTFLNAGKAARGE 178

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  + D++  I   +     L+K  GG+    T +R  GA I     +S GV+P 
Sbjct: 179 LVSCFLLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSGVVPV 238

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD
Sbjct: 239 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPD 298

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
           +  +   +N    LFSP    D+  +YG  F       +      + ++ ++ I+A   +
Sbjct: 299 ITFELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYHEMVDDGRIHKRKINARRFF 355

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594
           + +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI                  
Sbjct: 356 QTIAEIQFESGYPYIVFEDTVNKANPI--KGRITMSNLCSEILQVSEASTYNDDLSYDHV 413

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTH 653
            +   CNLGS+N+         D    + TI  A+R L  V D+ +  ++    + N   
Sbjct: 414 GKDISCNLGSLNIAKT-----MDSSDFSKTIEMAIRGLTAVSDLSDIGSVPSIARGNAMS 468

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712
            AIGLG M     L   H+ Y S EA++  +     + F AI AS ++A+ER   +  F+
Sbjct: 469 HAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYFMTVLFEAIKASCKIARERGETFEGFE 528

Query: 713 GSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            S +  G F    I            E+    ++   ++  W+ L   V   GM N N  
Sbjct: 529 ESKYASGEFFRKYIDEEWAPTTDKCRELLAASSIKVPTQADWEALAADVAKYGMYNQNLQ 588

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823
           A+ PT +I+ I   + SI P    + ++     G       ++ N               
Sbjct: 589 AVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMSN--------------- 633

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
                           +  + +  A+EI P  +I++ +   + +DQ  SL L+  +  + 
Sbjct: 634 ----------------ENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVTT 677

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           + L+  Y  AW  G+KT YY+R
Sbjct: 678 RDLNKSYIYAWKKGIKTLYYMR 699


>gi|30984467|ref|NP_851899.1| ribonucleotide reductase subunit 1 [Macacine herpesvirus 1]
 gi|30844281|gb|AAP41457.1| large subunit of ribonucleotide reductase [Macacine herpesvirus 1]
          Length = 997

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 164/655 (25%), Positives = 266/655 (40%), Gaps = 57/655 (8%)

Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAV 340
                 GLQ        Y   I+   +E     + R+A  LA            ++   +
Sbjct: 348 MRLMERGLQSALKYEEFYLKSIDAWALESVPQMYTRIAGHLACHSDLAGRVVFGRDSSWL 407

Query: 341 E----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLA 394
           E    F+        + STP +   GTR P +SSC+L           +    Q    + 
Sbjct: 408 EMFTYFFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVNPQTTTTHSTLAAITQNVGPIL 467

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
             SGG+G                      ++P LK  +    A N    R   V  YLE 
Sbjct: 468 ARSGGIGLCLQEFNDARRGNA-------SIMPTLKALDSLVAAYNNQSLRPTGVTVYLEP 520

Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
           WH D+   L ++     ++ RR  ++ +A W+PDLF KR+       +N  WTLF+    
Sbjct: 521 WHSDIMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAG 580

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L   +G+EFE  Y   E           + +    L   ++     TG P++ FKD  
Sbjct: 581 LSLSRFHGEEFETLYVRQEENGFG------QAMPIQDLAYAIVRAAATTGSPFVMFKDAV 634

Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           N        G  +  SNLCTEI   +++ ++ VCNL S+NL        FD+++L   +R
Sbjct: 635 NRHYIYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVR 694

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             V +++ +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+    
Sbjct: 695 ACVLMVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHI 754

Query: 687 MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E +   A+  S  L       +  FK S++  G F         + R            
Sbjct: 755 AEVMLLAAMQTSNALCFHGARPFHEFKHSMFSAGRF---HWEGFPDARPRYE------GE 805

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++ +   G+RNS  +A+ PT   A I  VS+   P + N++ K    G+    N+ 
Sbjct: 806 WERLRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTL 865

Query: 806 LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESAS 861
           L+ EL++         +I  L     S+   +  +  D   +   TAFE D   LI+  +
Sbjct: 866 LLQELRETFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCA 925

Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++D +QSL LY+ E          L  +   A+  GLKT  YY + R AT+
Sbjct: 926 DRAPYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980


>gi|28804675|dbj|BAC58079.1| iibonucleotide reductase large subunit [Cercopithecine herpesvirus
           1]
          Length = 997

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 164/655 (25%), Positives = 266/655 (40%), Gaps = 57/655 (8%)

Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAV 340
                 GLQ        Y   I+   +E     + R+A  LA            ++   +
Sbjct: 348 MRLMERGLQSALKYEEFYLKSIDAWALESVPQMYTRIAGHLACHSDLAGRVVFGRDSSWL 407

Query: 341 E----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLA 394
           E    F+        + STP +   GTR P +SSC+L           +    Q    + 
Sbjct: 408 EMFTYFFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVNPQTTTTHSTLAAITQNVGPIL 467

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
             SGG+G                      ++P LK  +    A N    R   V  YLE 
Sbjct: 468 ARSGGIGLCLQEFNDARRGNA-------SIMPTLKALDSLVAAYNNQSLRPTGVTVYLEP 520

Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
           WH D+   L ++     ++ RR  ++ +A W+PDLF KR+       +N  WTLF+    
Sbjct: 521 WHSDIMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAG 580

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L   +G+EFE  Y   E           + +    L   ++     TG P++ FKD  
Sbjct: 581 LSLSRFHGEEFETLYVRQEENGFG------QAMPIQDLAYAIVRAAATTGSPFVMFKDAV 634

Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           N        G  +  SNLCTEI   +++ ++ VCNL S+NL        FD+++L   +R
Sbjct: 635 NRHYIYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVR 694

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             V +++ +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+    
Sbjct: 695 ACVLMVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHI 754

Query: 687 MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E +   A+  S  L       +  FK S++  G F         + R            
Sbjct: 755 AEVMLLAAMQTSNALCFHGARPFHEFKHSMFSAGRF---HWEGFPDARPRYE------GE 805

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++ +   G+RNS  +A+ PT   A I  VS+   P + N++ K    G+    N+ 
Sbjct: 806 WERLRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTL 865

Query: 806 LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESAS 861
           L+ EL++         +I  L     S+   +  +  D   +   TAFE D   LI+  +
Sbjct: 866 LLQELRETFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCA 925

Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++D +QSL LY+ E          L  +   A+  GLKT  YY + R AT+
Sbjct: 926 DRAPYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980


>gi|253573377|ref|ZP_04850720.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846905|gb|EES74910.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 864

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 147/644 (22%), Positives = 270/644 (41%), Gaps = 61/644 (9%)

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +  + P+  + R+A  +A  E   EK      +F  +L  +  +        +G      
Sbjct: 86  NIEKTPEEMWDRLAKAMASVEETPEKQKEWEEKFRYILDDWKLVPGGRIAAGAGASDELT 145

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 146 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 205

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  WH DV +F+ +++  G    +  + N +  + 
Sbjct: 206 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVS 261

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD   + ++         +     +AD  ++  +R + A  +W
Sbjct: 262 NAFMKAVKEDLDWDLVFPDTTYEDYNEVWDGDLDKW-----KADGRKVIHYRTVKAREIW 316

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL ++N
Sbjct: 317 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMN 372

Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +   + D  +D+LA+T R +VR LDNVI+   +  E+ +K+    R +GLG MG  
Sbjct: 373 LSKFYDEEKHDVAWDELATTTRYSVRFLDNVINKTPYHFEENEKNQKKERRVGLGTMGLA 432

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F+   + Q  F  +
Sbjct: 433 ELMIKLNIRYGSPESLEFLDKLYGFIAKEAYLASADIAEEKGSFPAFEADKFLQSGFMKN 492

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +  E                 + + V+T G+RN   +  APT +   + G S  I+P
Sbjct: 493 MTEVYPE-----------------VGEAVRTKGIRNVTIITQAPTGSTGTMVGTSTGIEP 535

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   Y + +  G     +   V   ++   W +        H G         + L   
Sbjct: 536 YFAFKYYRQSRLG----FDEQFVPIAQE---WMD-------AHPG---------EPLPDY 572

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
             TA ++     I   +  Q+W+D + S       + + +    +Y  A+ +G K     
Sbjct: 573 FVTAMDLSAEDHIRVQAAIQRWVDSSISKTANCPSDFTVEDTKRLYELAFDLGCKGVTIY 632

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           R  S       T K  + K  A       ++          +S 
Sbjct: 633 RDGSRDVQVLQTEKKEEKKEEASAQPSAAATPQPANASVQASSP 676


>gi|293193539|ref|ZP_06609809.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           odontolyticus F0309]
 gi|292819895|gb|EFF78897.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           odontolyticus F0309]
          Length = 718

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 174/746 (23%), Positives = 300/746 (40%), Gaps = 89/746 (11%)

Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           +     +L+   + +   L +       +  +  AR    +   +     +   +K    
Sbjct: 11  EEAPSPELDYHALNAQLNLYDANGRIQFDADRAAARQYFLQHVNQNTVFFHDLEEKL--- 67

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                        ++EG   + + +     D+  L       +     +LG    Y  Y 
Sbjct: 68  ----------KYLVDEGYYEKHVLDQYDFADIKELYKQAYAHKFRFPTFLGAFKYYTSYT 117

Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   +G R  E  +    RVAM          + A  F + + +  F  +TPT  N+G  
Sbjct: 118 LKTFDGKRYLERFED---RVAMVSLYLARGDIELARSFVDEIMTGRFQPATPTFLNAGKA 174

Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +L SCFL  + D++  I   +     L+K  GG+    T +R  GA I     +S G
Sbjct: 175 ARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSG 234

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+P +K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++   
Sbjct: 235 VVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQFLDTKRENADEKIRIKTLSLGV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISA 542
            IPD+  +   +N    LFSP    D+  +YG  F       +      + ++ ++ I+A
Sbjct: 295 VIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYHEMVDDGRIHKRKINA 351

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------ 590
              ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI              
Sbjct: 352 RRFFQTIAEIQFESGYPYIVFEDTVNKANPI--KGRITMSNLCSEILQVSEASTYNDDLS 409

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKS 649
                +   CNLGS+N+         D    + TI  A+R L  V D+ +  ++    + 
Sbjct: 410 YDHVGKDISCNLGSLNIAKT-----MDSPDFSKTIEMAIRGLTAVSDLSDIGSVPSIARG 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAY 708
           N    AIGLG M     L   H+ Y S EA++  +     + F AI AS ++A+ER   +
Sbjct: 465 NAMSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYFMTVLFEAIKASCKIARERGETF 524

Query: 709 SSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
             F+ S +  G F    I            E+    ++   ++  W+ L   V   GM N
Sbjct: 525 EGFEESKYASGEFFRKYIDEEWAPTTDKCRELLAASSIKVPTQADWEALAADVAKYGMYN 584

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEA 819
            N  A+ PT +I+ I   + SI P    + ++     G       ++ N           
Sbjct: 585 QNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMSN----------- 633

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
                               +  + +  A+EI P  +I++ +   + +DQ  SL L+  +
Sbjct: 634 --------------------ENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPD 673

Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLR 904
             + + L+  Y  AW  G+KT YY+R
Sbjct: 674 TVTTRDLNKSYIYAWKKGIKTLYYMR 699


>gi|270307517|ref|YP_003329575.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
 gi|270153409|gb|ACZ61247.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp.
           VS]
          Length = 585

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 163/634 (25%), Positives = 261/634 (41%), Gaps = 75/634 (11%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFY 343
                    +L  RY     +G+  E  +  F RVA  +A  E            A EFY
Sbjct: 1   MKLSQNARIVLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +++ F F+ ++PTL N+G     LSSCF+  V D + GI   + E  ++ +Y GG G  
Sbjct: 61  CMMTGFEFLPNSPTLLNAGRELGLLSSCFVLPVADSVEGISKTIGEAMVIHQYGGGTGFA 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R     +   +  + G +  + V ++ A  + Q G R G   A L   H D+ +F+
Sbjct: 121 FDAIRPEDDPVKSGHTVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    D+   + +      + D F+++V   A + L +P                   
Sbjct: 181 RAK----DEGNHSANFGINIALTDSFIQKVRLGADYELVNPRT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++
Sbjct: 220 ----------GRVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTD 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C    L      T      S  LL      + DY +L   I  AVR LD+V+++N +  
Sbjct: 270 PCGGQPLLPYESATLGTINLSGMLLKEGNCCRVDYPRLGGLITKAVRFLDDVLEVNRYPT 329

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +K+    R IGLG MGF   L  L I Y S +AV  ADE M F+   A  A+ ELA 
Sbjct: 330 AEVEKAAKATRKIGLGFMGFAEMLIKLGIRYDSADAVSAADELMAFVKEAACQATEELAL 389

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERGA+ +F GS++             A+ R                         RN+ C
Sbjct: 390 ERGAFPAFAGSIYA---------KRGAKPR-------------------------RNATC 415

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMIS 822
           +    T T + I   S  I P Y  + V++ + G     +N       ++R  +  A+I 
Sbjct: 416 LTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIE 475

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            L   + S  N   IP+D +++  TA +I P W I   +  QK+ D A S  +      S
Sbjct: 476 KLLTGE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPANAS 534

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            + +  ++ +A  +GLK     R  S  S    T
Sbjct: 535 VEDIADLFLKAHELGLKGVTAYRDSSRESQVLCT 568


>gi|144899535|emb|CAM76399.1| Ribonucleoside-diphosphate reductase alpha subunit
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 772

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 153/649 (23%), Positives = 265/649 (40%), Gaps = 84/649 (12%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ + +  +  + R+A  LA  E +       F + L+ F F+ +   +  
Sbjct: 14  MKYRLKDADGTPVDKTIEETWGRIAKALAQAEKDPALWEARFADALADFKFLPAGRIISG 73

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     + +CF+   +PDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 74  AGTDRRVTMFNCFVMGDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVG 133

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E F+D +     +  R   
Sbjct: 134 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKH----EAGRLRM 189

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM+ V  +  W L                                  V++
Sbjct: 190 FNLSVLITDPFMEAVKHDQAWELVFG-----------------------------GVVYK 220

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A ALW K++   +    P + F D  N  +   +   +H++N C E  L        
Sbjct: 221 SLPARALWDKIMHATYAYAEPGVIFIDRINRLNNLHYCETIHATNPCGEQPLPPY----G 276

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           VC LGS+NL    ++        D DKL   +R AVR++DNVID++   +++ +    + 
Sbjct: 277 VCLLGSVNLAKLVSDPFEAKARLDMDKLRDLVRVAVRMMDNVIDVSRFPLDRHENEAKSK 336

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL L +  Y   +A+ + +E M+ +   A  ASVELAQE+GA+  ++ 
Sbjct: 337 RRIGLGVTGLADALILCNARYGGKDALRLTEEWMDALRREAYLASVELAQEKGAFPLYEK 396

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
             +  G                     T +    +++  +   G+RN+   +IAPT TI+
Sbjct: 397 EPYLAG--------------------ETIQALDADVQAAIAEHGIRNALLTSIAPTGTIS 436

Query: 774 NIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
                VS  ++P +   Y ++                L++     E  +SD  Y    + 
Sbjct: 437 LFADNVSSGLEPVFSFTYTRAV---------------LQKDGTRREEEVSDYAYRLFRLL 481

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
             E  P  L      A  ++P   +   +  QK+ID + S  + + E  S +    +Y Q
Sbjct: 482 KGENAP--LPPAFVDAQRLNPTEHVVMQAAVQKYIDSSISKTINVPESISFEDFRHVYEQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           A+  G K     R    T    +  K      +      P     +   
Sbjct: 540 AYASGCKGCTTYRPNDITGSVLTVKKEEPKAEDQDQPQLPLGKPAARPE 588


>gi|302879218|ref|YP_003847782.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Gallionella capsiferriformans ES-2]
 gi|302582007|gb|ADL56018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Gallionella capsiferriformans ES-2]
          Length = 942

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 154/638 (24%), Positives = 262/638 (41%), Gaps = 74/638 (11%)

Query: 323 RVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV---- 376
           RVA GLAL E   ++    E + L     F+ +      +G      L +CF+  V    
Sbjct: 28  RVARGLALAEKPDQRAHWEEAFYLAQENGFVPAGRINSAAGLAIQATLINCFVQPVGDAI 87

Query: 377 ---PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D   GI+ ALQ+ A   +  GG+G D++ +R  GA + GTN ++ G I +++V + 
Sbjct: 88  SGITDGKPGIYDALQQAAETMRRGGGVGYDFSTIRPEGALVKGTNSRASGPISYMRVFDR 147

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   V   G R+GA    L   H D+E+F+  +     D+    + N +  + D  M+ V
Sbjct: 148 SCETVESAGARRGAQMGVLRCDHPDIEKFISAK-----DKGDLRNFNISVGVTDALMQAV 202

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             ++ + L    E +      G                    ++R++ A  LWR+++   
Sbjct: 203 EADSDFELVHTAEPAAALRDAG-----------ATQRADGRWIYRRVRATDLWRQIIEST 251

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
           ++   P + F D  N  +   +  V+ ++N C E  L         C LGSINL     N
Sbjct: 252 YDHAEPGVLFIDLMNRDNNLSYCEVIEATNPCAEQPLPPY----GCCCLGSINLTRMVKN 307

Query: 614 NQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  FDY+     I+ AVR+LDNV+D+    + + +      R IGLG  G   AL 
Sbjct: 308 PFSTHAGFDYEPFKQLIKVAVRMLDNVLDVTAWPLPEQQLEAQNKRRIGLGYTGLGDALV 367

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y + EA   A +    +   A +AS+EL++ERGA+       +            
Sbjct: 368 MLGLRYDTEEARAFAADITRIMRDEAYAASIELSKERGAFPLLDAEHY------------ 415

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSY 786
                  LA  R +    DE+K  ++  G+RNS+ ++IAPT TI+       S  I+P++
Sbjct: 416 -------LAAPRFASRLPDEMKNHIREYGIRNSHLLSIAPTGTISLAFADNASNGIEPAF 468

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              Y +     D T  +  +           +      K   G + ++        +   
Sbjct: 469 SWFYTRKKRMMDGTSKDYSVE----------DHAWRVFKKQGGDVSHLP-------EAFV 511

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +A EI  +  ++  +    +ID + S  + +  +   +    +Y +AW  GLK     R 
Sbjct: 512 SALEIPALDHMKMCAAVAPYIDTSISKTVNVPADYPFEDFKNLYTEAWRAGLKGLATYRP 571

Query: 906 RSATSVEKS-TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            S      S T +   G++    V D +        P 
Sbjct: 572 NSVLGSVLSITPEPKKGEIPQDFVFDQDRRIELEAAPK 609


>gi|284992284|ref|YP_003410838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geodermatophilus obscurus DSM 43160]
 gi|284065529|gb|ADB76467.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geodermatophilus obscurus DSM 43160]
          Length = 951

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 136/633 (21%), Positives = 241/633 (38%), Gaps = 30/633 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E + E    E   +L   +F  ++P  FN GT    Q+S+CF+  V D++  I  
Sbjct: 117 GYFASEGDAEVFEHELTWMLMHQYFSFNSPVWFNVGTNAPQQVSACFILAVDDEMDSILN 176

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 177 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 235

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +    +  V         + 
Sbjct: 236 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGYDMDLGGKDITSVQ------YQNA 289

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    + D + +  E   E   R   R +  V   + A  L+RK+    +E   P I + 
Sbjct: 290 NNSVRVSDEFMRAVEDGDEFGLRA--RLDGSVIETVDAKTLFRKVTRAAWECADPGIQYD 347

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
           D  N        G +++SN C+E      S + + CNL S+NL+    ++  FD      
Sbjct: 348 DTINDWHTNPETGRINASNPCSEYM----SLDNSSCNLASLNLMKFLEDDGTFDSRNFVK 403

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       +   ++   +R +G+G     + L      Y S     +A
Sbjct: 404 AVELVITAMDISICFADFPTDPIGETTRAYRQLGIGYANLGALLMATGHAYDSRGGQTLA 463

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739
                 ++  A   S ELA   GAY  F  +                 +R    D+  + 
Sbjct: 464 AAITSLMTGTAYRRSAELAGIVGAYEGFARNADAHARVMRKHAAANDAIRPVGADDADVL 523

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           + +   W E  +     G RN+    +APT TI  +    +  I+P +  + Y K    G
Sbjct: 524 KAATAQWQECLELGADFGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKYKKLVGGG 583

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L+     DE + + ++Y    G + +   +  +  ++   A     I 
Sbjct: 584 SMQIVNQTVPRALRSLGYQDEQIEAIVEYISEHGHVVDAPSLRPEHYEVFDCAMGERAIS 643

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q +I  A S  + + E  + + ++ IY Q W +GLK     R       
Sbjct: 644 PMGHVRMMAAVQPFISGAISKTVNMPETATVEDVENIYFQGWKLGLKALAIYRDNCKVGQ 703

Query: 912 EKS--TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             S    K  D K+ A       S      +P 
Sbjct: 704 PLSDAKAKKADTKVEAAAPATALSHPVRKRLPK 736


>gi|150020504|ref|YP_001305858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho melanesiensis BI429]
 gi|149793025|gb|ABR30473.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho melanesiensis BI429]
          Length = 833

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 181/677 (26%), Positives = 290/677 (42%), Gaps = 94/677 (13%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKR------------A 339
                +IL +RYF    NG  +E        RVA  +A  E     +             
Sbjct: 15  SKNAYKILTERYFFKNLNGKFLETKWDDVCRRVARVVATAELVNNPKLSNKKLDEIKELE 74

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT---------------------------RHPQLSSCF 372
             F+ +L +  F+ ++PTLFN+G                                LS+CF
Sbjct: 75  ETFFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIEEMTLEDYEEIYKTRNHLHMLSACF 134

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +  + D +  IF A++E A++ K  GG+G++++ +R  G+ + GT+G++ G + F+ V N
Sbjct: 135 VVPIEDSIDEIFEAVKEYALITKAGGGIGSNFSNLRPKGSFVAGTHGQASGPVSFMHVYN 194

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                V QG KR+GA+   L   H D+EEF+   K   D  +     N +  IP      
Sbjct: 195 SAIAVVEQGYKRRGALMGILNINHPDIEEFI-TAKENNDGEKILKYFNISVGIP------ 247

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKISAVALWRKMLT 551
                                  KEF   YEN E       + K  RKI A  + +++  
Sbjct: 248 --------------------FDKKEFLKIYENDEEITLTHPKFKETRKIKARHILKRIAK 287

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             ++TG P + F    N   P      + S+N C EI L         CNLGSI++    
Sbjct: 288 NAWKTGDPGLAFLHEMNKYYPLYPEKEIISTNPCGEIGLAPY----EACNLGSIDVSKFV 343

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            NNQ D+  L +T+R  VR LDNVID+N   +EK  K+    R +GLG+MGF   L+ L+
Sbjct: 344 ENNQIDWKALETTVRLTVRFLDNVIDVNVFPLEKITKAVKESRRLGLGIMGFADLLYKLN 403

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           +PY S +  EIA   M FI+ H    S +L +E+G +  F+ S +              E
Sbjct: 404 VPYNSEKGREIAANLMGFIALHGHDESNKLGREKGNFPLFEKSRF-----------FKEE 452

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                AM  +      +   +    G RN   + IAPT +I+NI   S  ++P++   YV
Sbjct: 453 NFVPFAMGMSKYDDEIKEVMKEAKKGKRNVAVLTIAPTGSISNIADTSSGLEPNFLLAYV 512

Query: 792 K-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           +              +N  L  +L    L  E +   L    GS+  ++ +P+++KK+  
Sbjct: 513 RYMNKHDGGKEALFYINKVLEQKLDPITL--EKIKEKLIE-KGSLQELD-VPEEIKKVFV 568

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA +I PM  +      Q+++D   S  + +    + + +  IY +A+ + ++     R 
Sbjct: 569 TAMDISPMDHLLMQDAFQRYVDNNISKTINMPSNATEEDVLNIYLEAFKLNVRGLTIYRD 628

Query: 906 RSATSVEKSTLKGVDGK 922
            S  +   +  K V  K
Sbjct: 629 GSLQTQVLTAAKHVKTK 645


>gi|57234945|ref|YP_180992.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
 gi|57225393|gb|AAW40450.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195]
          Length = 585

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 162/627 (25%), Positives = 261/627 (41%), Gaps = 75/627 (11%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFY 343
                    +L  RY     +G+  E  +  F RVA  +A  E            A EFY
Sbjct: 1   MKLSQNARIVLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +++ F F+ ++PTL N+G     LSSCF+  V D + GI  A+ E  ++ +Y GG G  
Sbjct: 61  GMMTGFEFLPNSPTLLNAGRELGLLSSCFVLPVADSVAGIAKAVGEAMVIHQYGGGTGFA 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R     +   +  + G +  + V ++    + Q G R G   A L   H D+ +F+
Sbjct: 121 FDAIRPEDDPVKSGHKVAGGPVRLVGVFSEAVNYIKQAGVRCGCNSASLPVNHPDILKFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +    D+   + +      + D F+++V +   + L +P                   
Sbjct: 181 RAK----DEGSHSANFGINIALTDDFIRKVRRGEDYELVNPRT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V   +SA  ++ ++    +ETG P I F D  N  +P   +G   +++
Sbjct: 220 ----------GRVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTD 269

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C    L      T      S  LL      + DY +L   I  AVR LD+V+++N +  
Sbjct: 270 PCGGQPLLPYESATLGTINLSGMLLKEGNCCRVDYPRLGGLIAKAVRFLDDVLEVNRYPS 329

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +K+    R IGLG MGF   L  L I Y S EAV  ADE M F+   A  A+ ELA 
Sbjct: 330 AEVEKAARATRKIGLGFMGFAEMLIKLGIRYDSAEAVSAADELMAFVKEAACQATEELAL 389

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERGA+ +F GS++ Q           A+ R                         RN+ C
Sbjct: 390 ERGAFPAFAGSIYAQ---------KGAKPR-------------------------RNATC 415

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMIS 822
           +    T T + I   S  I P Y  + V++ + G     +N       ++R  +  A+I 
Sbjct: 416 LTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIE 475

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            L   + S  N   IP+D +++  TA +I P W I   +  QK+ D A S  +    + S
Sbjct: 476 KLLTGE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPADAS 534

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            + +  ++ +A  +GLK     R  S 
Sbjct: 535 VEDIADLFLKAHELGLKGVTAYRDSSR 561


>gi|325955615|ref|YP_004239275.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa
           DSM 16922]
 gi|323438233|gb|ADX68697.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa
           DSM 16922]
          Length = 562

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 164/623 (26%), Positives = 257/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +  + E     F  ++       S+P  
Sbjct: 27  QILNRGYLLKG-----ETVEGAIDRITAAAARRLYKPE-MQESFKEMIERGWMSLSSPIW 80

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   +PD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 81  ANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRERGSAVTD-N 139

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D+EEFL ++           +
Sbjct: 140 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIEEFLKIKSIG----NPIQN 195

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ +                                             
Sbjct: 196 LFYGVCVPDYWMQEMIDGD----------------------------------------- 214

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEITLNSSSE 595
            +    +W K+L    E G P+I F D  N   PQ +      +++SNLC+EI L SS +
Sbjct: 215 -VEKRNIWAKVLESRQEKGLPYIFFSDNVNKNKPQVYKDLNMRINASNLCSEIMLPSSRD 273

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649
           E+ +C L S+NL        +D  K    +R A+  LD V+       E         + 
Sbjct: 274 ESFICCLSSMNLE------LYDEWKDTEAVRLAIFFLDAVLQEFIEKTEGNYYLTAANRF 327

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+   EA     E  + I   A  AS ELA+  G   
Sbjct: 328 AKRHRALGLGVLGWHSYLQKNMIPFEGMEAKLRTTEIFKHIQSKADKASEELARIYGEPE 387

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  +AIAPT
Sbjct: 388 LLKG------------------------------------------YGRRNTTTLAIAPT 405

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ + +E +   +  + 
Sbjct: 406 TSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLEEKGMDNEDVWRGIMLNG 465

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ +I  + ++ K +  T  EI  + +++ A+ RQK++DQ+QSLNL +      K+++ 
Sbjct: 466 GSVQHIAELTENEKAVFKTFKEISQLEIVQQAAIRQKFVDQSQSLNLNIPANLPVKEVNR 525

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+KT YY RS+S   
Sbjct: 526 LMIEAWQLGVKTLYYQRSQSVAK 548


>gi|284032582|ref|YP_003382513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kribbella flavida DSM 17836]
 gi|283811875|gb|ADB33714.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kribbella flavida DSM 17836]
          Length = 960

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 126/639 (19%), Positives = 235/639 (36%), Gaps = 36/639 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E   +L   +F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 121 GYFATAADAEVFEHELTWMLLHQYFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILN 180

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 181 WYKEEGLIFKGGSGAGLNLSRIRSSKELLQSSGGTASGPVSFMRGADASAGTIKSGGATR 240

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +                 + 
Sbjct: 241 RAAKMVVLDVDHPDIEEFVETKMREEDKIRVLRDAGYDMDL------GGRDITSVQYQNA 294

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    + D + +  E   E   R   R +  V   + A  L+ K+    +    P + + 
Sbjct: 295 NNSVRVTDEFMRAVEEKGEFGLRA--RLDGSVIETVDARELFDKISHAAWACADPGLQYD 352

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
           D  N        G + +SN C+E        + + CNL S+NL+    ++  FD +K   
Sbjct: 353 DTINDWHTTPETGRITASNPCSEYMH----LDNSSCNLASLNLMKFLRDDDLFDSEKFVK 408

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E   ++   +R +G+G     + L      Y S     +A
Sbjct: 409 AVELIITAMDISICFADFPTEAIGETTRAYRQLGIGYANLGALLMATGHAYDSDGGRALA 468

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                 ++  +   S ELA   G Y  F+ +                 +R     +  + 
Sbjct: 469 GAITSLMTGTSYKRSAELAGIVGPYDGFERNKDAHTRVMRKHAAANDAIRTIHEIDKDVQ 528

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           + +   W ++       G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 529 KAATAAWQDVLTLGAKNGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 588

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF---EI 851
              +VN  +   L+    + E  I  +  +    G + +   +  +  +I  TA     I
Sbjct: 589 SMQIVNQTVPRALRLHG-YTEETIEAIVEYISEHGHVVDAPGLKPEHYEIFDTAMGERAI 647

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-- 908
            PM  +   +  Q ++  A S  + L E  + +++  +Y Q W +GLK     R      
Sbjct: 648 KPMGHVRMMAAAQPFLSGAISKTVNLPETATVEEIADVYFQGWKLGLKALAVYRDNCKVG 707

Query: 909 -----TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                   +K+T    +  +  V    P         PS
Sbjct: 708 QPLADAKAKKATEAVAEPVVEKVIEYRPTRKRLPKSRPS 746


>gi|21228932|ref|NP_634854.1| ribonucleoside-diphosphate [Methanosarcina mazei Go1]
 gi|20907466|gb|AAM32526.1| Ribonucleoside-diphosphate [Methanosarcina mazei Go1]
          Length = 553

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 151/626 (24%), Positives = 263/626 (42%), Gaps = 92/626 (14%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            F+ L ++ L  RY            +    RVA  +AL   E      EF +++ S  F
Sbjct: 7   EFDLLAIETLKSRYLQEGEKD----WEDVCKRVAKAIALNRGEYT----EFLDIILSKAF 58

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
           + S+PTL N+GT   QLS+CF+  V D +  IF +++  A++ K  GG G +++ +R  G
Sbjct: 59  IPSSPTLMNAGTPSGQLSACFVIPVEDGIEKIFDSVKTAALIQKTGGGTGFNFSKIRPDG 118

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +      G + G +  +++ N+    V   GKR+GA    L+  H D+  F+  ++  G 
Sbjct: 119 SVTVSGVGTASGPVALMRLFNEATEIVKHFGKRRGANMGILDISHNDIISFIRAKRTEG- 177

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                 + N +  + D FM    +                                +   
Sbjct: 178 ---VLSNFNISVMLTDSFMSLADEG----------------------------RMDEVWN 206

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E           ++ +++  ++  G P + F D  N  +    +G + ++N C E  L 
Sbjct: 207 TETGT----KIGEIFSEIVEGIWRNGEPGVLFYDHINRDNFTPALGDISATNPCGEEPLL 262

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
                   CNLGSINL       + + D L   +R AVR LDN ID+N + + + +K+  
Sbjct: 263 PF----ESCNLGSINLSILVEEGKVNRDSLREAVRKAVRFLDNEIDVNVYPVPEIEKATK 318

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+MGF   L  L +PY S EA+ +A++ M  I+  AI  S +LA E+G +  +
Sbjct: 319 KTRKIGLGVMGFHDMLLKLGLPYDSEEALRLAEKLMGQINRAAIRESEKLAAEKGPFPEY 378

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           + S+W                                         +RN+   AIAPT T
Sbjct: 379 ENSIW--------------------------------------EFPVRNATLTAIAPTGT 400

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELK-QRDLWDEAMISDLKYHDG 829
           I+ + G S  I+P +  +Y ++ ++G +F +V+       K +    D   + +  Y  G
Sbjct: 401 ISILAGCSAGIEPVFSWVYRRARIAGKEFMLVHPLFETHFKQKLSKPDYNRLLEHVYAHG 460

Query: 830 SIGNIER---IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
           ++ +I     + ++ K +  +A +I+    I+  +  Q+      S  + +  +   + +
Sbjct: 461 TLQDITDSKIVSEEEKGLFRSALDINWKTHIDIQAAFQRHCHAGISKTINMPVDAGKEDI 520

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSV 911
                 AW  GLK     R+ S   V
Sbjct: 521 GKALIYAWKQGLKGLTIYRTGSRQHV 546


>gi|315605372|ref|ZP_07880415.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315312941|gb|EFU61015.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 718

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 174/746 (23%), Positives = 301/746 (40%), Gaps = 89/746 (11%)

Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           +     +L+   + +   L + +     +  +  AR    +   +     +   +K    
Sbjct: 11  EEAPSPELDYHALNAQLNLYDADGRIQFDADRAAARQYFLQHVNQNTVFFHDLEEKL--- 67

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                        ++EG   + + +     D+  L       +     +LG    Y  Y 
Sbjct: 68  ----------KYLVDEGYYEKHVLDQYDFADIKELYKQAYAHKFRFPTFLGAFKYYTSYT 117

Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   +G R  E  +    RVAM          + A +F + + +  F  +TPT  N+G  
Sbjct: 118 LKTFDGKRYLERFED---RVAMVSLYLARGDIELARQFVDEIMTGRFQPATPTFLNAGKA 174

Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +L SCFL  + D++  I   +     L+K  GG+    T +R  GA I     +S G
Sbjct: 175 ARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSG 234

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 235 VVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISA 542
            IPD+  +   +N    LFSP    D+  +YG  F       +      + ++ ++ I+A
Sbjct: 295 VIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYHEMVDDGRIHKRKINA 351

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------ 590
              ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI              
Sbjct: 352 RRFFQTIAEIQFESGYPYIVFEDTVNAANPI--KGRITMSNLCSEILQVSEASTYNDDLS 409

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKS 649
            +   +   CNLGS+N+         D    + TI TA+R L  V D+ +   +    + 
Sbjct: 410 YAHVGKDISCNLGSLNIAKT-----MDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARG 464

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAY 708
           N    AIGLG M     L   H+ Y S EA++  +     + + AI AS  +A+ER   +
Sbjct: 465 NAMSHAIGLGQMNLHGYLAREHVYYGSEEALDFTNIYFMTVLYEAIKASCTIARERGERF 524

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRN 760
             F+ S +  G F    I    E   +         +++  ++  W+ L   V   GM N
Sbjct: 525 EGFEDSTYASGEFFRKYIDEAWEPTTDKCRELLAASSIHVPTQQDWEALAADVARYGMYN 584

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEA 819
            N  A+ PT +I+ I   + SI P    + ++     G       ++ N           
Sbjct: 585 QNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMSN----------- 633

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
                               +  + +  A+EI P  +I+  +   + +DQ  SL L+  +
Sbjct: 634 --------------------ENLQYYQDAYEIGPEKIIDIYAVATQHVDQGLSLTLFYPD 673

Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLR 904
             + + L+  Y  AW  G+KT YY+R
Sbjct: 674 TVTTRDLNKSYIYAWRKGIKTLYYMR 699


>gi|217076775|ref|YP_002334491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho africanus TCF52B]
 gi|217036628|gb|ACJ75150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermosipho africanus TCF52B]
          Length = 838

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 178/696 (25%), Positives = 299/696 (42%), Gaps = 103/696 (14%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRA 339
            + +K   D        +IL +RYF+   +G+ +E   +    RVA  +A  E     + 
Sbjct: 3   EDIIKRWLDVEPSKNAYKILSERYFIKDISGNFLENKWEDVCRRVARVVATSELVNNPQV 62

Query: 340 VE----------------FYNLLSSFHFMCSTPTLFNSGT-------------------- 363
            +                F+ +L +  F+ ++PTLFN+G                     
Sbjct: 63  KKMDDAKKLEIIKETEETFFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIENMTLSDYQ 122

Query: 364 -------RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
                      LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R  G+ + G
Sbjct: 123 EIYNTRNHLHMLSACFVVPVDDSINGIFEAVKEYALITKAGGGIGSNFSSLRPKGSFVAG 182

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           T+G++ G + F+ V N     V QG KR+GA+   L   H D+EEF+   K   D  +  
Sbjct: 183 THGQASGPVSFMHVFNSAIGVVEQGYKRRGALMGILNINHPDIEEFI-TAKENNDGEKVL 241

Query: 477 HDMNTANWIP---DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
              N +  IP      ++   ++    L  P              E  Y           
Sbjct: 242 KYFNISVGIPFDKKELLRLYEEDGEIELSHPKFT-----------EKRY----------- 279

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
                 I A  + +++    ++TG P + F    N   P      + S+N C EI L   
Sbjct: 280 ------IKARDIIKQIAENAWKTGDPGLAFLHEMNKYYPLYPEMKIISTNPCGEIGLAPY 333

Query: 594 SEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 CNLGSI++     ++ Q D+D L  T+R AVR LDNVID+N   +EK   +   
Sbjct: 334 ----EACNLGSIDVAKFVTDDGQVDWDALEDTVRLAVRFLDNVIDVNVFPLEKITNAVRN 389

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MGF   L+ L IPY S E  + A + M F++ H    S +L +E+G++  F+
Sbjct: 390 SRRLGLGIMGFADLLYKLDIPYNSEEGRQFAADLMGFMALHGHDESNKLGREKGSFPLFE 449

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S +              E     AM  +      +   R    G RN   + IAPT +I
Sbjct: 450 KSKF-----------FKEEEFVPFAMGMSKYDEDIKKVMRESKKGKRNVAVLTIAPTGSI 498

Query: 773 ANICGVSQSIDPSYQNLYVK-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           +NI   S  ++P++   YV+              VN  L  +L  + L  E +   L   
Sbjct: 499 SNIADTSSGLEPNFLLAYVRYMNKHDGTKESLFYVNKVLEKKLDPKIL--EKIKEKLIE- 555

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
            GS+ +++ +P+++KK+  TA +I PM  +      Q+++D   S  + + +  + + + 
Sbjct: 556 KGSLQDLD-VPEEIKKVFVTAMDISPMVHLLMQDAFQRYVDNNISKTINMPNNATKEDIL 614

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            IY +A  + ++     R  S  +   ++ K V  K
Sbjct: 615 NIYLEALKLNVRGLTIYRDGSLQTQVLTSAKHVKTK 650


>gi|256422446|ref|YP_003123099.1| ribonucleotide-diphosphate reductase subunit alpha [Chitinophaga
           pinensis DSM 2588]
 gi|256037354|gb|ACU60898.1| ribonucleoside-diphosphate reductase, alpha chain [Chitinophaga
           pinensis DSM 2588]
          Length = 565

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 155/623 (24%), Positives = 256/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +  + E +   F  ++       S+P  
Sbjct: 30  QILNRGYLLKG-----ETVEGAIDRICTAAAQRLYKPELK-EAFVEMIERGWMSLSSPIW 83

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   +PD++ GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 84  ANMGTERGLPISCFNVHIPDNIEGITHKLGEVIMQTKIGGGTSAYFGGLRARGSAVTD-N 142

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+++ +     ++QGG R+GA  AY++  H D++EFL ++    D      +
Sbjct: 143 GKSSGAVSFMRLFDTAMDTISQGGVRRGAFAAYMDIDHDDIQEFLSIK----DIGHPIQN 198

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +     +PD +M+ +                                             
Sbjct: 199 LFYGVCVPDYWMQDMIDGD----------------------------------------- 217

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595
            +    +W K+L    + G P++ F D  N   PQ +      +++SNLC+EI L S+ +
Sbjct: 218 -MEKREIWAKVLESRQQKGLPYLFFTDNVNRNKPQVYKDLNLAINASNLCSEIMLPSTED 276

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649
           E+ +C L S+NL        +D  K    ++ A   LD V+       E         + 
Sbjct: 277 ESFICCLSSMNLE------LYDEWKDTDAVKLATFFLDAVLQEFIVKTEGNHFLAAANRF 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    I +   +A ++     + I   A  A+ ELA   G   
Sbjct: 331 AKRHRALGLGVLGWHSYLQKNMIAFEGMQAKQLTSIIFKDIRDKAEKATKELAWIYGEPE 390

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 391 VLKG------------------------------------------YGRRNTTLMAIAPT 408

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N +      G+F   N +L   L+Q+ + +E     +  + 
Sbjct: 409 TSSSAILGQTSPGIEPFSSNYFKAGLSKGNFMRKNKYLKALLEQKGIDNEDTWRSIMLNH 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ ++E + +  K +  T  EI  + +++ A+ RQ  +DQAQSLNL +      K+++ 
Sbjct: 469 GSVQHLEELTEHEKDVFKTFKEISQLEIVQQAAIRQTHVDQAQSLNLNIPSNLPVKEVNR 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+KT YY RS+S + 
Sbjct: 529 LLIEAWKLGVKTLYYQRSQSVSK 551


>gi|261408340|ref|YP_003244581.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. Y412MC10]
 gi|261284803|gb|ACX66774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. Y412MC10]
          Length = 883

 Score =  327 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 144/643 (22%), Positives = 262/643 (40%), Gaps = 61/643 (9%)

Query: 312 SRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +  + P+  + R+A  ++  E   E   +   +F  +L  +  +        +G      
Sbjct: 83  TIEKTPEEMWDRLAAAMSSVEATPELQEEWRGKFREILDDWKLVPGGRIAAGAGASDELT 142

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  WH DVE+F+ +++  G    +  + N +  + 
Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMMNDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD     +D         ++   R      I  ++ + A  +W
Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPDYDELWDGDLDKWKKAGR-----RIIPYKTVKAREVW 313

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL ++N
Sbjct: 314 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMN 369

Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +     D  +D+LA+T R +VR LDNVID   +  E+ + +    R +GLG MG  
Sbjct: 370 LSKFYDEANHDVAWDELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGLA 429

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F   L+ Q  F  +
Sbjct: 430 ELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGFMKN 489

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +  E                 + + V+  G RN   +  APT +   + G S  I+P
Sbjct: 490 MAEVYPE-----------------VAEAVRKKGARNVTVITQAPTGSTGTMVGTSTGIEP 532

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   Y + +  G                  +DE  +   +    S        ++L   
Sbjct: 533 YFAFKYFRQSRLG------------------FDEQFVPIAQDWLDSHPG-----EELPDY 569

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
           + TA  +     I   +  Q+W+D + S       + + +    +Y  A+ +G K     
Sbjct: 570 YVTAMSLSAEDHIRVQAAIQRWVDSSISKTANCPSDFTVEDTKRLYELAFDLGCKGVTIY 629

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           R  S       T K  D    A   +   ++        +   
Sbjct: 630 RDGSRDVQVLQTEKKEDKAAEATTASTAEAALEQSAAGQAAEE 672


>gi|164688727|ref|ZP_02212755.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM
           16795]
 gi|164602203|gb|EDQ95668.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM
           16795]
          Length = 698

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 170/704 (24%), Positives = 293/704 (41%), Gaps = 69/704 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L +  +   +    +   L  +     +E    ++ + +    + +  + + ++ + 
Sbjct: 25  KEALKSYLEDYIEPKMKKFDNL-NDRLNYLVENDYYSKEILDLYDQYVIDVIYDFIRAKN 83

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                Y+     Y  Y L  N     +E  +   + VA+ L   E +    A +    L 
Sbjct: 84  FKFQSYMSASKFYQNYALKSNDGEEILENYEDKVLIVALTLGNGEPK---LAKDIAEKLI 140

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  F  +TPT  N+G     ++ SCFL  V D   GI  A+     L+K  GG+  + T 
Sbjct: 141 NQEFQPATPTFLNAGRARGGKMVSCFLVNVEDSCEGISYAVSSANHLSKIGGGVALNLTR 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I G  G + GV+   K+   +    NQ G R+GA   YL   H D E  LD +
Sbjct: 201 LRASGESIKGIKGAAGGVMGVAKLLEQSFSYFNQMGARQGAGAVYLNVLHPDFETLLDSK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD FM+   +N     F P  +   + ++        E Y+
Sbjct: 261 KINADEKIRLTTLSIGAIIPDKFMELAEKNEKCYAFYPHSIYQKYGVHLDG-IKMDEWYD 319

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           + A+  EI+  ++I+   L  ++     E+G+P++ F D  N +   + VG++  SNLC 
Sbjct: 320 KLANDDEIEK-KEINPRELLTRIAQTQQESGYPYVVFIDSANEQHTLKDVGMIKMSNLCC 378

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  +               CNLGS+N+         D   +  TI  A+R L  
Sbjct: 379 EIFQYQTPSDIKGYGQVSDWGQDISCNLGSLNIANVM-----DNKDIEKTIDVAIRALTY 433

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  N   +   KK N +  +IGLG M     L    I Y S E  E AD     + ++
Sbjct: 434 VSDNTNIEEVPTIKKGNDSSHSIGLGAMNLHGYLVREDIIYTSKEGREFADVFFAMMRYY 493

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSR 743
           AI  S+ +A E+   ++ F+ S + +G            D +    +V      +N  ++
Sbjct: 494 AIKTSMNIAIEKGETFNGFEKSEYAKGPESELFKKYCTKDFLPTSEKVSKLFEGINIPTK 553

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W EL ++VK  G+ N+   AIAPT +I+ +   + S+ P  + + V++          
Sbjct: 554 EDWTELLQQVKNNGIYNAYLTAIAPTQSISYVQNSTSSVMPITEQIEVRTYGDSTTIYPM 613

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            FL          +E M+                       + +A+ ID + LI+  +  
Sbjct: 614 PFLT---------NENML----------------------YYQSAYRIDMLDLIDMVAII 642

Query: 864 QKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  IDQ  S  L++ +  + + +   Y  A   GLK+ YY R++
Sbjct: 643 QGHIDQGISTTLFVTDDKTTRDIARYYIYAHKKGLKSLYYTRTK 686


>gi|89053442|ref|YP_508893.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1]
 gi|88862991|gb|ABD53868.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1]
          Length = 757

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 150/650 (23%), Positives = 254/650 (39%), Gaps = 85/650 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ I+   +  + R+A  LA  E +       FY  L  F ++ +   +  
Sbjct: 15  MKYRLKEADGTAIDGSVEDTWRRIAKALAAVEDDSATWEETFYTALEDFKYLPAGRIVAG 74

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  TVPD + GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTGRSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVA 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A +   H D+E+F+  ++    D  R   
Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIAAKQ----DPARLRM 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +    D FM+ V  +  W L   D                             KVFR
Sbjct: 191 FNMSVLATDPFMEAVKDDGPWDLVFGD-----------------------------KVFR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +   + ++N C E  L        
Sbjct: 222 TVQARDLWNRIMRATYDYAEPGVIFIDRINAENNLNYAETICATNPCGEQPLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQFDYD-----KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL    ++   D       KLA    TA+R++DNV+D +   ++   +     
Sbjct: 278 ACLLGSVNLAQLVSDPFTDTADLDPIKLADLTATAIRMMDNVVDTSRFPLDAQAQEAQAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL +  + Y S EA    ++ M  I+  +  AS  LA E+GA+     
Sbjct: 338 RRIGLGVTGLADALAMCRLRYGSEEAAAKTEDWMARIANASYRASALLAAEKGAFP---- 393

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                          L +  +        RL  D ++  +   G+RN+   +IAPT TI+
Sbjct: 394 ---------------LFDAAEYAKAPMVQRLDAD-VQALIAEHGLRNALLTSIAPTGTIS 437

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
              G  S  I+P + N Y +  +  D T     +V+    +  W +              
Sbjct: 438 LFAGNVSSGIEPIFANAYTRKVLQVDGTRTEEEVVDFAVAK--WRDMHGDT--------- 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                   L      A  + P+  +   +  Q WID + S  + +  + S +    +Y +
Sbjct: 487 -------PLPDYFVNAQTLAPLDHVRMQAAAQPWIDSSISKTINVPADISFEAFKDVYAE 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
           A+  G K     R    T    S  +  D       +   +     +  P
Sbjct: 540 AYATGCKGCTTYRPNDVTGSVLSVSEADDKPQAIEAIEAASGEVVYMSEP 589


>gi|237785989|ref|YP_002906694.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758901|gb|ACR18151.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 718

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 180/740 (24%), Positives = 298/740 (40%), Gaps = 73/740 (9%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S   L+   + +   L ++         R    +   +     +        H+++    
Sbjct: 14  STEQLDFHALNAMLNLYDENGKIQFDKDREAANQFFLQ-----HVNQNTVFFHDLE---- 64

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E F   I+       + E     D+  L       +     +LG    Y  Y L   +G+
Sbjct: 65  EKFDYLIKNNYYNGDVVEKYEFSDIKDLFKQAYSYKFRFKTFLGAYKYYTSYTLRTFDGN 124

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M            A    + +    F  +TPT  N G     +  S
Sbjct: 125 RYLERYED---RVCMVALGLADGDISLARRLVDEIIQGRFQPATPTFLNIGKAQRGEPVS 181

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 182 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREQGAPIKKIENQSSGVIPVMKL 241

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 242 LEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 301

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISAVALWRK 548
           +   +N    LFSP    D+  +YGK F      E+Y+   +   IK  + I+A   ++ 
Sbjct: 302 ELAKRNDDMYLFSP---YDVERVYGKPFSDIGISEHYDEMVEDPRIKKSK-INARQFFQT 357

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCN 601
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S  E         + +
Sbjct: 358 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSPSEFNADLTYQHIGD 415

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D D    TI TA+R L  V D  +  ++   ++ N    AIGLG 
Sbjct: 416 DISCNLGSLNIAMVMDSDDFDGTIDTAIRGLTAVSDQTSIDSVPSVRQGNEHSHAIGLGQ 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L   HI Y S EA++  +     +    + AS  LA+ERG  ++ F+ S +  G
Sbjct: 476 MNLHGYLGREHIYYGSEEALDFTNAYFAAVMVACLKASNRLAKERGVTFTGFEDSDYASG 535

Query: 720 VF-----PIDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F     P D      +V+     +  S      W +L++ ++  G+ N N  AI PT +
Sbjct: 536 AFFDRYDPKDFAPKTEKVKRIFEESSISVTTPEEWAQLREDIQQYGLYNRNLQAIPPTGS 595

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G        + N+                     
Sbjct: 596 ISYINNSTSSIHPIASRIEIRKEGKIGRVYYPAPHMNND--------------------- 634

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                            A+EI    +I++ +   K++DQ  SL L+  +  + + ++   
Sbjct: 635 ----------NLDYFKDAYEIGYEKVIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQ 684

Query: 890 RQAWLMGLKTTYYLRSRSAT 909
             AW  G+KT YY+R R A 
Sbjct: 685 IYAWKNGIKTLYYIRLRQAA 704


>gi|12642667|gb|AAK00339.1| ribonucleotide reductase large subunit [Bovine herpesvirus 2]
          Length = 784

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 167/683 (24%), Positives = 279/683 (40%), Gaps = 59/683 (8%)

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFE--YLGLQI---LYDRYFLHINGSRIEMPQA 319
               L   + + +   +       RD        G Q    L + Y   + G   E    
Sbjct: 107 MDPKLAVMLRNHEPQLMEFLGSVARDSYLHVAERGFQSALKLEEFYLKRLPGDYKESVIQ 166

Query: 320 FFMRVAMGLALKETEK-----------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368
            + R+A  LA +                     F+N L S   + +TP + N GT     
Sbjct: 167 LYTRIAGHLACRSEGMCRVALGREGSWMDMFEYFFNNLYSHAIVPATPAMLNLGTTGCYT 226

Query: 369 SSCFLTTVPDDLY--GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            SC+L           +       + +   +GG+G     +    A            +P
Sbjct: 227 GSCYLINPQAQTSQAALAAITGNVSSILAKNGGVGLCMQSLNDAQAG-------QNSSVP 279

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWI 485
            LK  +    A N+  +R   VC Y+E WH D+   L  R     ++ +R  ++ TA W+
Sbjct: 280 VLKALDSLVAAYNKNSRRPTGVCVYVEPWHSDILALLRTRGVLAGEEAQRCDNIFTALWM 339

Query: 486 PDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           PDLF +R+       ++  WTLF      +L  LYG EFE  Y   ER+       +  +
Sbjct: 340 PDLFFERLIRYLNGDKDMHWTLFDHKTGGELASLYGAEFEKKYVELEREG------LGER 393

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598
           +S   +   ++     TG P++ FKD  N        G  +  SNLCTEI   +    + 
Sbjct: 394 VSIRDITYAIVRSAATTGSPFVMFKDAVNRHYIYDTQGEAIACSNLCTEIVHPADQNMSG 453

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           VCNLGS+N+     +  FD+D+L S +R  V +++ +ID       + ++  +  R++G+
Sbjct: 454 VCNLGSVNVAHCVVDGVFDFDRLRSAVRACVLMVNVMIDSTSLPTVQCRRGQNKLRSMGI 513

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G+ G  +A   + +   S E         E +   A+ AS  L       +  F  S++ 
Sbjct: 514 GMQGLHTACLKMGLDMVSQEFRRTNKLIAEVMLLSAMQASNALCMHGAPPFREFGRSMYR 573

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
            G F  +             +       W+EL++ +K  G+RNS  +A+ PT T + +  
Sbjct: 574 NGKFHWE---------GFPGVTPAFPEEWEELRRNIKRYGLRNSQFVALMPTVTSSQVSD 624

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSIG-NI 834
           VS+S  P++ NL+ K   SG+    N  L+ EL++         ++  L  H  +    I
Sbjct: 625 VSESFAPTFTNLFSKVTKSGEVLRPNVLLLKELRRTFDGPRLSKVMDSLDKHQWTPDLAI 684

Query: 835 ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLDFI 888
             + +    +   TAF+ +   LI+  + R  ++D +QSL LY+ E          L  +
Sbjct: 685 PCLDEASPLRRFKTAFDYNQEDLIDLCADRAPYVDHSQSLTLYVTERADGTLPASMLTRL 744

Query: 889 YRQAWLMGLKT-TYYLRSRSATS 910
              A+  GLKT  YY + R AT+
Sbjct: 745 LVHAYKRGLKTGMYYCKVRKATN 767


>gi|83722608|ref|YP_443886.1| ribonucleotide reductase subunit 1 [Papiine herpesvirus 2]
 gi|75905761|gb|ABA29293.1| UL39 [Papiine herpesvirus 2]
          Length = 986

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 166/655 (25%), Positives = 271/655 (41%), Gaps = 58/655 (8%)

Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAV 340
                 GLQ        Y   I+G  +E     + R+A  LA            ++   +
Sbjct: 338 MRLMERGLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACHADLAGRVVFGRDASWL 397

Query: 341 E----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLA 394
           E    F+N   +   + STP +   GTR P  SSC+L           +    Q  A + 
Sbjct: 398 EMFTYFFNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAITQNVAPIL 457

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
             SGG+G                   +  ++P LK  +    A N    R   V  YLE 
Sbjct: 458 ARSGGIGLCLQNFNDRPG--------NASLMPALKALDSIVAAYNDQSLRPTGVTVYLEP 509

Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
           WH D+   L ++     ++ RR  ++ +A W+PDLF KR+       +N  WTLFS    
Sbjct: 510 WHSDIMAVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFSHRGG 569

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             L   +G+EFE  Y   E             +    +   ++     TG P++ FKD  
Sbjct: 570 MHLASFHGEEFERLYRCQEELGFG------EAVPIQDVAYAIVRAAATTGSPFVMFKDAV 623

Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           N        G  +  SNLCTEI   ++++++ VCNL S+NL        FD+ +L  ++R
Sbjct: 624 NRHYIYDTQGAAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFARLRESVR 683

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             V +++ +ID       + ++ +   R++G+G+ G  +A   + +  AS E  E+    
Sbjct: 684 ACVLMVNIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHI 743

Query: 687 MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E +   A+ AS  L       +  FK S++  G F         + R            
Sbjct: 744 AEVMLLAAMQASNALCFHGARPFREFKRSVFRAGRF---HWEGFPDARPRYE------GE 794

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++ +   G+RNS  +A+ PT   A +  VS+   P + N++ K    G+    N+ 
Sbjct: 795 WEMLRQSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTL 854

Query: 806 LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESAS 861
           L+ EL++         +I  L     S+   +  +  D   +   TAFE D   LI+  +
Sbjct: 855 LLRELRETFSGRRLNEVIDALDAKQWSVERALPCLAADHPLRRFKTAFEYDQELLIDLCA 914

Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++D +QSL L++ E          L  +   A+  GLKT  YY + R AT+
Sbjct: 915 DRAPYVDHSQSLTLHVTERADGTLPASSLVRLLVHAYKRGLKTGMYYCKVRKATN 969


>gi|319944854|ref|ZP_08019116.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
 gi|319741424|gb|EFV93849.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
          Length = 727

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 187/744 (25%), Positives = 316/744 (42%), Gaps = 84/744 (11%)

Query: 192 GLSESD---LETALIFSSRTLIEKEPNYAKVT----ARFLLEKLRREVLTTVYKKPQKAT 244
           G+S+ D   L+   + +   L + + N         AR    +   +     +   +K  
Sbjct: 18  GVSDDDKPGLDYHALNAMLNLYDADGNIQFEADRRAARQYFLQHVNQNTVFFHNLDEKLR 77

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYD 303
           +   +  Y             +R     + D           Y R F F  +LG    Y 
Sbjct: 78  YLVDEGYYDAEVLD-----QYSRNFQRHIWDE---------AYSRKFRFPTFLGAFKYYT 123

Query: 304 RYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
            Y L        +E  +   + VA+ LA  +   E+ A+ F + +    F  +TPT  N+
Sbjct: 124 SYTLKTRNGQRYLERFEDRVVMVALTLARGD---EQLALRFMDEIIGGRFQPATPTFLNA 180

Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           G +   +L SCFL  V D++  I  A+     L+K  GG+    T +R LGA I G   +
Sbjct: 181 GKKSRGELISCFLLRVEDNMESIGRAINSALQLSKRGGGVALMLTNLRELGAPIKGIENQ 240

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++
Sbjct: 241 SSGVVPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLS 300

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RK 539
               IPD+  +   +NA   LFSP +V     +YGK F       +     G+ ++  +K
Sbjct: 301 LGVVIPDVTFELAKRNADMYLFSPHDV---EKVYGKAFSEISVTEKYDEMVGDKRIRKKK 357

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSE 595
           I+A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI       + ++
Sbjct: 358 INAREFFQTLAEIQFESGYPYIMFEDTVNAANPI--EGRITMSNLCSEILQVNEASTFND 415

Query: 596 ETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651
           + +  +LG   S NL +       D   L +T+  AVR L  V +++   ++   ++ N 
Sbjct: 416 DLSYRHLGTDISCNLGSLNIAAAMDGPDLGATVEAAVRALTAVSEMSAIDSVPSVRRGND 475

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
              A+GLG M     L    I Y SPE ++        +++HA+ AS  LAQE+   +  
Sbjct: 476 EAHAVGLGQMNLHGFLARERIHYGSPEGIDFTRVYFATVAYHALRASNLLAQEKGSTFVG 535

Query: 711 FKGSLWDQGVFP-----IDSIGLLAEVRDEL---AMNRTSRLPWDELKKRVKTIGMRNSN 762
           F  S +  G F       D +     VR+      +   +R  W  L++ V   G+ N N
Sbjct: 536 FDRSKYADGSFFEKYVTRDWLPETETVRELFARMDVTLPTREDWAALREAVMKHGLYNRN 595

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             A+ PT +I+ I   + SI P    + ++  +  G       F+ N+            
Sbjct: 596 LQAVPPTGSISYINHSTSSIHPIVSKVEIRKESKIGRVYYPAPFMTND------------ 643

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
                                + +  A+EI P  LI++ +   + +DQ  SL L+   + 
Sbjct: 644 -------------------NLEYYRDAYEIGPEPLIDTYAAATEHVDQGLSLTLFFPSDA 684

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904
           + + ++     AW  G+KT YY+R
Sbjct: 685 TTRDINRAQIYAWKKGIKTIYYVR 708


>gi|119387082|ref|YP_918137.1| ribonucleoside-diphosphate reductase, alpha subunit [Paracoccus
           denitrificans PD1222]
 gi|119377677|gb|ABL72441.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Paracoccus denitrificans PD1222]
          Length = 708

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 179/737 (24%), Positives = 303/737 (41%), Gaps = 70/737 (9%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           + DG+  ++L+   + +   L + E        R   +  R+       +   + T    
Sbjct: 2   LDDGVK-AELDYHALNAMLNLYDGE-------GRIRFDADRKAARQYFLQHVNQNTVFFH 53

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                E     ++EG     + +      L  + +     +     +LG    Y  Y L 
Sbjct: 54  SL--DEKLGYLVDEGYYEAEVLDQYPRAFLHRIWDAAYARKFRFPTFLGAFKYYTSYTLK 111

Query: 309 INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
               R  +E  +   + VA+ LA  +   E  A+ F   + S  F  +TPT  N+G +  
Sbjct: 112 TRDGRRYLERYEDRVVMVALALARGD---EDLAMRFMEEILSGRFQPATPTFLNAGKKSR 168

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVI
Sbjct: 169 GELISCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNLREAGAPIKGIENQSSGVI 228

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 229 PVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVI 288

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVA 544
           PD+  +   +N    LFSP +V     +YG  F       +      + ++  +KI+A A
Sbjct: 289 PDVTFELAKRNEDMYLFSPHDV---EKVYGLPFSEISVTEKYAEMVDDKRIRKKKINARA 345

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-- 602
            ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   + + E        
Sbjct: 346 FFQTLAEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVNEASEFDEDLGYR 403

Query: 603 -----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656
                 S NL +       D     +T+  A+R L  V +++    +   ++ N    A+
Sbjct: 404 HLGTDISCNLGSLNIAATMDGPDFGATVEAAIRALTAVSEMSAIEAVPSIRRGNDEAHAV 463

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPE VE        +++HAI AS  LAQE+   +  F  S 
Sbjct: 464 GLGQMNLHGFLARERIHYGSPEGVEFTSVYFAAVAYHAIRASNLLAQEKGRTFKDFDKSK 523

Query: 716 WDQGVFP-----IDSIGLLAE-VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G F       D +  L +  R    ++  +R  W  L++ V   G+ N N  A+ PT
Sbjct: 524 YADGSFFDKYVAQDWLPTLPDVARVFEGVSLPTREDWAALRESVMRHGLYNRNLQAVPPT 583

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G                               
Sbjct: 584 GSISYINNSTSSIHPIVAKIEIRKEGKIGRVYYP-------------------------- 617

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
                   + ++    +  A+EI P  +I++ +   + +DQ  SL L+   E + + ++ 
Sbjct: 618 -----AAFMSNENLDYYRDAYEIGPEAIIDTYAAATEHVDQGLSLTLFFPAEATTRDINR 672

Query: 888 IYRQAWLMGLKTTYYLR 904
               AW  G+KT YY+R
Sbjct: 673 AQIYAWKKGIKTIYYIR 689


>gi|315648443|ref|ZP_07901542.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus vortex V453]
 gi|315276137|gb|EFU39483.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus vortex V453]
          Length = 884

 Score =  326 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 143/635 (22%), Positives = 262/635 (41%), Gaps = 61/635 (9%)

Query: 312 SRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +  + P+  + R+A  ++  E   E   +   +F  +L  +  +        +G      
Sbjct: 83  TIEKTPEEMWDRLAAAMSSVEATPELQEEWRGKFREILDDWKLVPGGRIAAGAGASDELT 142

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  WH DVE+F+ +++  G    +  + N +  + 
Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD        Y + ++   E ++       +  ++ + A  +W
Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPD---YDELWDGDLEKWKNAGHS--VIPYKTVRAREVW 313

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL ++N
Sbjct: 314 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMN 369

Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +     D  +++LA+T R +VR LDNVID   +  E+ + +    R +GLG MG  
Sbjct: 370 LSKFYDEANHDVAWEELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGLA 429

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L+I Y SPE++E  D+   FI+  A  AS ++A+E+G++ +F   L+ Q  F  +
Sbjct: 430 ELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGFMKN 489

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              +  E                 +   V+  G RN   +  APT +   + G S  I+P
Sbjct: 490 MAEVYPE-----------------VADAVREKGARNVTVITQAPTGSTGTMVGTSTGIEP 532

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   Y + +  G                  +DE  +   +    S        ++L   
Sbjct: 533 YFAFKYFRQSRLG------------------FDEQFVPIAQDWLDSHPG-----EELPDY 569

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
           + TA  +     I   +  Q+W+D + S       + + +    +Y  A+ +G K     
Sbjct: 570 YVTAMTLSAEDHIRVQAAIQRWVDSSISKTANCPADFTVEDTKRLYELAFDLGCKGVTIY 629

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           R  S       T K  D    AV      ++    
Sbjct: 630 RDGSRDVQVLQTEKKEDKAAEAVTAPSAETALEQS 664


>gi|304407150|ref|ZP_07388804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus curdlanolyticus YK9]
 gi|304344137|gb|EFM09977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus curdlanolyticus YK9]
          Length = 875

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 135/614 (21%), Positives = 255/614 (41%), Gaps = 60/614 (9%)

Query: 316 MPQAFFMRVA--MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
            P+  + R+A  M    KE ++++    F  +L  +  +        +G      L +C+
Sbjct: 87  TPEEMWDRLAGAMASVEKEEKRKEWTERFRYILDDWKLVPGGRIAAGAGASEELTLFNCY 146

Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +   P D   GI   L E   +    GG+G + + +R   A + G NG S G + +  + 
Sbjct: 147 VIPSPKDSRGGIMETLTEMTEIMARGGGVGINLSSLRPRRAIVAGVNGSSSGAVSWGGLF 206

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           + T   + QGG R+GA+   +  WH D+ +F+ +++  G    +  + N +  + + FMK
Sbjct: 207 SYTTGLIEQGGSRRGALMLMINDWHPDLLDFITVKQTMG----QVTNANLSVCVSNGFMK 262

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            V ++  W L  PD  +  +D         + +         +  ++ + A  +W  ++ 
Sbjct: 263 AVKEDLDWELVFPDTKATGYDQLWDGDLEKWRSNGH-----PVIPYKTVRARDVWHTIIE 317

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             +++  P + F +  N  S   +   +  +N C E  L +      VCNL +INL   +
Sbjct: 318 SAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAINLSKFY 373

Query: 612 A--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
               +  D+++L    R +VR LDNVID   +   + + +    R +GLG MG    +  
Sbjct: 374 DEGKDDVDWNELGRVTRWSVRFLDNVIDKTPYHFPENEANQQNERRVGLGTMGLAELMIK 433

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L I Y SPE++   D+   FI+  +  AS E+A E+G++ +F+   + Q  F  + +   
Sbjct: 434 LGIRYGSPESLSFLDKLYGFIARESYLASSEIASEKGSFPAFEAEPYLQSGFMQNMV--- 490

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                           + E+   +   G+RN   +  APT +   + G S  I+P +   
Sbjct: 491 --------------EEYPEVGDAIMKSGVRNVTVLTQAPTGSTGTMVGTSTGIEPYFAFE 536

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y + +  G     +  LV   ++   W       +  H G          +L   + T+ 
Sbjct: 537 YFRQSRLG----FDKQLVPIAQE---W-------IDAHPG---------QELPDYYVTSM 573

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +     I   +  Q+W+D + S      ++ + ++   +Y  A+ +G K     R  S 
Sbjct: 574 SLSAKDHIRVQAAIQRWVDSSISKTANAPNDFTVEETKELYELAFDLGCKGVTIYRDGSR 633

Query: 909 TSVEKSTLKGVDGK 922
                ST    + K
Sbjct: 634 DVQVLSTSSKDEKK 647


>gi|56694762|ref|YP_164482.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 2]
 gi|52843314|gb|AAU88105.1| large subunit of ribonucleotide reductase [Cercopithecine
           herpesvirus 2]
          Length = 975

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 165/653 (25%), Positives = 273/653 (41%), Gaps = 58/653 (8%)

Query: 293 FEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVE- 341
               GLQ        Y   I+G  +E     + R+A  LA +          ++   +E 
Sbjct: 329 LMERGLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACRSDLAGRVVFGRDASWLEM 388

Query: 342 ---FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKY 396
              F+N   +   + STP +   GTR P  SSC+L           +    Q+ A +   
Sbjct: 389 FTYFFNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAITQDVAPILAR 448

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
           SGG+G                   +  ++P LK  +    A N    R   V  YLE WH
Sbjct: 449 SGGIGLCLQSFNDRPG--------NASIMPALKALDSIVAAYNDQSLRPTGVTVYLEPWH 500

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSD 509
            D+   L ++     ++ RR  ++ +A W+PDLF KR+       ++  WTLFS      
Sbjct: 501 SDIMAVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKDVVWTLFSNRGGMH 560

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
           L   +G+EFE  Y   E Q           +    +   ++     TG P++ FKD  N 
Sbjct: 561 LSSFHGEEFEKLYLCQEEQGFG------EAVPIQDVAYAIVRAAATTGSPFVMFKDAVNR 614

Query: 570 RSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
                  G  +  SNLCTEI   ++++++ VCNL S+NL        FD+ +L  ++R  
Sbjct: 615 HYIYDTQGSAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFSRLRESVRAC 674

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V +++ +ID       + ++ +   R++G+G+ G  +A   L +  AS E  E+     E
Sbjct: 675 VLMVNIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKLGLDLASEEFRELNRHIAE 734

Query: 689 FISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            +   A+ AS  L       +  FK S++  G F           R            W+
Sbjct: 735 VMLLAAMQASNALCLHGARPFREFKRSVFRAGRF---HWEGFPGARPRYE------GEWE 785

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L++ +   G+RNS  +A+ PT   A +  VS+   P + N++ K    G+    N+ L+
Sbjct: 786 RLRQSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTLLL 845

Query: 808 NELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESASRR 863
            EL++         ++  L     S+   +  +  D   +   TAF+ D   LI+  + R
Sbjct: 846 RELRETFSGRRLNEVLDGLDAKQWSVERALPCLAADHPLRRFKTAFDYDQELLIDLCADR 905

Query: 864 QKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
             ++D +QS+ LY+ E          L  +   A+  GLKT  YY + R AT+
Sbjct: 906 APYVDHSQSMTLYVTERADGTLPASALVRLLAHAYKRGLKTGMYYCKVRKATN 958


>gi|320095250|ref|ZP_08026947.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977791|gb|EFW09437.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 718

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 173/744 (23%), Positives = 298/744 (40%), Gaps = 85/744 (11%)

Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           +     +L+   + +   L + +     +  +  AR    +   +     +   +K  + 
Sbjct: 11  EEAPSPELDYHALNAQLNLYDADGRIQFDADRAAARQYFLQHVNQNTVFFHDLEEKLDY- 69

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                        +EEG   + + +     D+  L       +     +LG    Y  Y 
Sbjct: 70  ------------LVEEGYYEKHVLDQYAMEDIKALYKQAYAHKFRFPTFLGAFKYYTSYT 117

Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   +G R  E  +   + V+M LA  +      A  F + + +  F  +TPT  N+G  
Sbjct: 118 LKTFDGKRYLERFEDRVVMVSMYLARGD---VDLAASFVDEIMTGRFQPATPTFLNAGKA 174

Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +L SCFL  V D++  I   +     L+K  GG+    T +R  GA I     +S G
Sbjct: 175 ARGELVSCFLLRVEDNMESIARGINSALQLSKRGGGVALQLTNLREAGAPIKKIQNQSSG 234

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           V+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 235 VVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISA 542
            IPD+  +   +N    LFSP    D+  +YG  F       +      + ++  +KI+A
Sbjct: 295 VIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEIPVTEKYHEMVDDGRIHKKKINA 351

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNS 592
              ++ +  + FE+G+P+I F+D  N  +P             +  V  ++   E    +
Sbjct: 352 RRFFQTLAEIQFESGYPYIVFEDTVNRANPIKGRVTMSNLCSEILQVSEASTYNEDLSYA 411

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNH 651
              +   CNLGS+N+         D    + TI TA+R L  V D+ +   +    + N 
Sbjct: 412 HVGKDISCNLGSLNIAKT-----MDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARGNA 466

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
              AIGLG M     L   H+ Y S EA++  +     + F A+ AS  +A+ER   +  
Sbjct: 467 MSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNIYFMTVLFEAVRASCAIARERGERFEG 526

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSN 762
           F+ S +  G F    I    E   +         ++   +R  W  L   V   GM N N
Sbjct: 527 FEDSAYASGEFFRKYIDEAWEPATDKCRELLAASSIRVPTRDDWRALAADVARYGMYNQN 586

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMI 821
             A+ PT +I+ I   + SI P    + ++     G       ++ N             
Sbjct: 587 LQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMTN------------- 633

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
                             +  + +  A+EI P  +I++ +   + +DQ  SL L+  +  
Sbjct: 634 ------------------ENLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTV 675

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904
           + + L+  Y  AW  G+KT YY+R
Sbjct: 676 TTRDLNKSYIYAWRKGIKTLYYMR 699


>gi|218289142|ref|ZP_03493378.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240725|gb|EED07904.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 574

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 147/482 (30%), Positives = 238/482 (49%), Gaps = 19/482 (3%)

Query: 122 REERSDVRAAQSHSKSDA--PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179
           R  + ++R+ ++    +          +   DG +   +  ++   +   C   +    +
Sbjct: 14  RTGQDELRSGRAIHTLEDWRDRVKTFTVEKRDGRIEPLSLDKIFAFLRRGCEAAEGCDPE 73

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238
            + ++ +  + DG+  S++    I ++       EP +  V AR LL    ++       
Sbjct: 74  RLAADVWPQLRDGMRTSEIARVAIQAAVEKTSVAEPGWQFVAARLLLLDAYKQASRN--- 130

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              +   H     + +        G     + E   + ++  LA  +K ERD    Y+GL
Sbjct: 131 ---RGYRHLGYGDFYQLIVELERIGRYGTYIREHYSEDEIAELAAYIKPERDHLLNYVGL 187

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           + L DRY +   +   +E+PQ  FM V+M LA+KE +K   A  FY++LS+     +TPT
Sbjct: 188 KQLLDRYAIRNLDNGIMELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPT 247

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L N+     QLSSCF+    DDL  I+   +  A ++K+ GG+G     +R  G+ I   
Sbjct: 248 LSNARKPFHQLSSCFIDMPEDDLVSIYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNH 307

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G S GV+P+++  N+TAV+ NQ G R GA   YL+ WH D+ +FL LR N GD+R + H
Sbjct: 308 PGASGGVVPWIRNFNNTAVSCNQLGMRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAH 367

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRG 532
           D+     IPDLFM+RV +   W LF P EV  +      D +G+EFE  YE      +  
Sbjct: 368 DIFPGVCIPDLFMRRVEERGMWYLFCPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLP 427

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
            +    +I A+ + ++++   FETG P+I F+D  N  +P +H G+V+ SNLCTEI  N 
Sbjct: 428 RV----EIPAIEIMKRIMQSAFETGTPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNM 483

Query: 593 SS 594
           S 
Sbjct: 484 SP 485


>gi|126179941|ref|YP_001047906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoculleus marisnigri JR1]
 gi|125862735|gb|ABN57924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanoculleus marisnigri JR1]
          Length = 548

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 165/625 (26%), Positives = 265/625 (42%), Gaps = 88/625 (14%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
                +   +L  RY L       E P   F RVA  +      +E  +     LLS+  
Sbjct: 1   MEISPIARLLLEGRYLL-----PGETPAGLFSRVADAVGGTARSREFFS-----LLSALL 50

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F+ ++PTL N+GT   QLS+CF+  + D L GIFG L   A++ +  GG G  ++ +R  
Sbjct: 51  FLPNSPTLMNAGTSAGQLSACFVLPMEDTLEGIFGTLGHMALIHQSGGGTGFSFSLLRPR 110

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G  ++G  G + G + F++V +    AV QGG+R+GA    L   H D+EEF+  ++  G
Sbjct: 111 GDAVNGVTGAATGPVSFMRVFDAATGAVRQGGRRRGANMGVLAASHPDIEEFVTAKQEGG 170

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                  + N +  + + F + +     + L +P +                        
Sbjct: 171 -----LSNFNISVGVDERFFRCLATGKEYDLINPRD------------------------ 201

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                V++ + A +LWR +      +G P + F D  N ++   H+G + ++N C E  L
Sbjct: 202 ---GSVWKSVDAGSLWRLIAASACISGEPGVLFLDEINRQNTTPHLGRIEATNPCGEQPL 258

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGS+NL      +  D D L + +R  V  LD VID N   + + ++  
Sbjct: 259 YPY----ESCNLGSVNLARCVRQHDLDEDLLITVVRCGVDFLDAVIDANRFPLPEIRERT 314

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R IGLG+MGF  AL  L IPY S EA+  A   ME I   A   S E+ +E G++ +
Sbjct: 315 LATRKIGLGVMGFAEALIRLGIPYESEEALRFAGSLMEHIEEMARERSEEIGKEIGSFPA 374

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            +GS++                                         MRN+    IAPT 
Sbjct: 375 IEGSIFSGE--------------------------------------MRNATVTTIAPTG 396

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I  I G +  I+P +   Y +  + G    + S LV     R    + +   ++ H G+
Sbjct: 397 SIHLIAGTTSGIEPVFSFAYDR-TIDGRPVSIVSDLVAGFLPRTAGGKDVAEHVRRH-GT 454

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
           +  +  + D  + +  TA EI P   +   +  QK +D A S  + L    +  ++  ++
Sbjct: 455 VAGLP-LDDHARDLFRTATEIAPEHHVRMQAAFQKHVDNAVSKTVNLPQSATVDEIACVF 513

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914
             A  +G K T   R RS      S
Sbjct: 514 SLAHDLGCKGTTVYRYRSRPDQIFS 538


>gi|312130785|ref|YP_003998125.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella
           byssophila DSM 17132]
 gi|311907331|gb|ADQ17772.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella
           byssophila DSM 17132]
          Length = 557

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 165/623 (26%), Positives = 260/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L  NG  +E       R+    A +  + E     F  ++       S+P  
Sbjct: 22  QILNRGYLL--NGETVEGAIH---RICSAAAKRLYKPEL-TEAFKEMIERGWMSLSSPIW 75

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD +  I   L E  M  K  GG    +  +RG G+ +   N
Sbjct: 76  ANMGTERGLPISCFNVHVPDSIESITHKLGEVIMQTKTGGGTSGYFGDLRGRGSAVTD-N 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D EEFL ++           +
Sbjct: 135 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDCEEFLQIKNIG----NPIQN 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           +  A  +PD +M+ +                                             
Sbjct: 191 LFFAVCVPDYWMQEMIDGD----------------------------------------- 209

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEITLNSSSE 595
            +    LW K+L    + G P+I F D  N   PQ    H   +++SNLC+EI L SS++
Sbjct: 210 -MEKRQLWAKVLESRQQKGLPYIFFTDNVNRNKPQVYKDHNMRINASNLCSEIMLPSSAD 268

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649
           E+ +C L S+NL        +D  K    ++ A+  LD V+       E         + 
Sbjct: 269 ESFICCLSSMNLE------LYDEWKDTKAVKLAIFFLDAVLQEFIAKTEDNYYLAAANRF 322

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    +P+   EA ++  E    +   A  A+ ELA   G   
Sbjct: 323 AKRHRALGLGVLGWHSLLQKRMLPFEGMEAKQLTSEIFRHMKTEADKATEELAMIYGEPE 382

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 383 LLKG------------------------------------------YGRRNTTTMAIAPT 400

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N +      G+F   N +L   L+++ + +E     +  ++
Sbjct: 401 TSSSAILGQTSPGIEPFSSNYFKAGLAKGNFMRKNKYLKALLEEKGIDNEETWRSIMLNN 460

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ +++ + +  K +  T  EI  + +I+ AS RQK++DQ QSLN+ +  E   K ++ 
Sbjct: 461 GSVQHLKELNEYEKSVFKTFKEISQLEIIQQASIRQKYVDQGQSLNINIPAELPIKDVNR 520

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW +G+K+ YY RS+S + 
Sbjct: 521 LIIEAWKLGIKSLYYQRSQSVSK 543


>gi|328943410|ref|ZP_08240875.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
 gi|327491379|gb|EGF23153.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
          Length = 756

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 183/788 (23%), Positives = 318/788 (40%), Gaps = 82/788 (10%)

Query: 193 LSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +S S  ++ +  ++ T    ++ +Y             ++ +    K+  +      +  
Sbjct: 22  MSTSTTDSYIALNALTRFKTEDGHYNFSA--------DKKAVQLYLKEQVEPRLKTFES- 72

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
             +     +E     + + +     D+  L +    +       +G    Y  Y L  + 
Sbjct: 73  CQQRLDYLVEHQYYDKAVLDLYSQEDIEALTSLAYEQHFEFLSLMGAMKFYMAYALQSDD 132

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
               +E  +    RV M            A      L S  F  +TPT  N+G +   + 
Sbjct: 133 RTTYLERFED---RVVMCALFLANGDVALARNLVLDLMSNRFQPATPTFLNAGKKRRGEY 189

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SC+L  V D++  I   +  +  L+K  GG+    T +R  GA I G   ++ GV+P +
Sbjct: 190 ISCYLLRVEDNMESIARGIGTSLQLSKRGGGVALCLTNLRETGAPIKGFAHQASGVVPVM 249

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  DT    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 250 KLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKSLSLGVIVPDI 309

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             K   +N    LFSP ++   +     +     E Y+   +   IK    ISA   ++ 
Sbjct: 310 TFKLAKENKDMALFSPYDIEKEYKCSMADMS-ITEKYDELVNNPRIKKD-YISARKFFQT 367

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA---------- 598
           +  + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   S+               
Sbjct: 368 IAELQFESGYPYILFEDTVNRRNPHKKAGRIVMSNLCSEIAQVSTPSSYTEDLGFTQTGV 427

Query: 599 --VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRA 655
              CNLGSIN+ A   +      + + TI+ A+  LD V    +        K N  + A
Sbjct: 428 DICCNLGSINIAAAMDHA----SEFSRTIKDAIVALDRVSRSSDLSCAPSVNKGNKLNHA 483

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG M     L   HI YAS EAV+  D     +++HA  AS ELAQ  GA++ F  S 
Sbjct: 484 VGLGAMNLHGFLATHHIYYASAEAVDFVDMFFYAMAYHAFKASSELAQTEGAFAGFADSE 543

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +A++  +      ++  W EL K ++  G+ NS+ MA+A
Sbjct: 544 YADGTYFKKYTEHKIAPATPRIAKLLADCHFELPTQQDWQELVKDIRAHGLANSHLMAVA 603

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + S+ P    +  +         V ++                      
Sbjct: 604 PTGSISYLSSCTPSLQPVVSPVETRKEGKVGRVYVPAY---------------------- 641

Query: 828 DGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                   +I DD  K +   A+E+    +I   +  QK +DQA SL L++    + + L
Sbjct: 642 --------KISDDTYKYYQDGAYEVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDL 693

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           +  Y  A+     + YY+R        +  +      L +  +    + +        C 
Sbjct: 694 NRAYIYAFKKKCDSIYYVR-------IRQDVLEGSEHLESDEILPDAAKSDEKKSAFHCD 746

Query: 946 SDTECEVC 953
             +EC+VC
Sbjct: 747 GSSECQVC 754


>gi|219883064|ref|YP_002478228.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
 gi|219862070|gb|ACL42411.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 726

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 191/755 (25%), Positives = 304/755 (40%), Gaps = 84/755 (11%)

Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235
           VS   +L E     Y GL   +L   L      L   +        R    +  ++    
Sbjct: 11  VSKDDLLPEA----YKGLGYHELNAML-----NLYGADGKMQFGADREAARQYFKQ---- 57

Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
            +        H++     E     +E       L E      +  L      ++     +
Sbjct: 58  -HVNMNTVFFHDLA----EKLDYLVENRYYEPELLEQYGFEFVKSLFQRAYKKKFRFETF 112

Query: 296 LGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           LG    Y  Y L   +G R  E  +     VA+GLA  +      A +  + +    F  
Sbjct: 113 LGAFKFYTSYTLKTFDGKRFLERYEDRVTMVALGLAAGDKA---LAEKLVDEIIDGRFQP 169

Query: 354 STPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  NSG     +L SCFL  + D++  I  A+     L+K  GG+    T VR  GA
Sbjct: 170 ATPTFLNSGKAQRGELVSCFLLRIEDNMESISRAINSALQLSKRGGGVAFALTNVRETGA 229

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D+
Sbjct: 230 PIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADE 289

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQAD 530
           + R   ++    IPD+  +   ++    LFSP    D+  +YG  F      E Y    D
Sbjct: 290 KIRIKTLSLGVVIPDITFELAKKDEDMYLFSP---YDVEKVYGMPFSDINVTEKYYEMVD 346

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
              IK  + I A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI  
Sbjct: 347 DARIKKTK-IKAREFFQTLAEIQFESGYPYIMFEDTVNRANPI--EGKIIMSNLCSEILQ 403

Query: 591 ------NSSSEETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640
                  + +    V  +G   S NL +       D   L +T+  A+R L  V D  N 
Sbjct: 404 VSTPTTYNENLNYEVDGIGKDISCNLGSMNIAKAMDGGDLGATVEIAIRALTAVSDQSNI 463

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E   + N    AIGLG M     L   H+ Y SPE+++   + M  ++FHAI AS  
Sbjct: 464 TAVESVARGNRMSHAIGLGQMNLHGFLAREHVYYGSPESIDFFGKYMAAVAFHAIRASNL 523

Query: 701 LAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKK 751
           +A+ERG  +  F+ S +  G F    +            E+  +  +   +   W+ELK 
Sbjct: 524 IAKERGVTFDGFERSKYASGEFFDKYVTRSWLPTTERGQELFAKFGITLPTIADWEELKA 583

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNEL 810
            V   G+ N N  A+ PT +I+ I   + SI P    + ++     G       +L N  
Sbjct: 584 SVMEHGIYNQNLQAVPPTGSISYINNSTASIHPIAAKIEIRKEGKIGRTYFPAPYLTN-- 641

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +  + +  A+EI    +++  +   + +DQ 
Sbjct: 642 -----------------------------ENLEYYQDAYEIGYEKIVDMYAAATEHVDQG 672

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 673 LSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIR 707


>gi|153004250|ref|YP_001378575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027823|gb|ABS25591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
          Length = 593

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 167/634 (26%), Positives = 271/634 (42%), Gaps = 78/634 (12%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
                L +L  RY L    G+ +E P A F RVA  +A  E    +++ A  F   +S+ 
Sbjct: 4   LTDNALHVLERRYLLRDERGAVVETPGALFRRVARAVAAAEPPAERDRAAERFEARMSAL 63

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R 
Sbjct: 64  EFLPNSPTLMNAGRAHGQLAACFVLPVEDDLAAIFDALKWAALIHQSGGGTGFAFSRLRP 123

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  T+G + G + F++V +     + QGG R+GA  A L   H D+ EF+D +++ 
Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLSAEHPDILEFVDAKRSH 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G +     + N +   PD   +  ++   W L  P                         
Sbjct: 184 GLE-----NFNLSVAAPDALFRAASRGDPWPLRHP------------------------- 213

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 + R I   AL  ++    + +G P + F D     +P   +G   + N C E  
Sbjct: 214 ---RGGIVRNIDPRALLARIADSAWASGEPGLVFLDRVEAANPTPDLGHFEAVNPCGEQP 270

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         C LGS+NL     + + D+D L + +R  VR LD+V+D+N   + +  + 
Sbjct: 271 LLPF----EACTLGSVNLACFERSGRVDWDGLGACVRDGVRFLDDVLDVNVWPLPQIAEI 326

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +H +R +GLG+MG+   L  L IPY SP+A+  ADE M F++  A +AS  LA+ERGA+ 
Sbjct: 327 SHRNRKVGLGVMGWADLLVRLGIPYDSPDALAKADEVMGFVTREAHAASEALARERGAFP 386

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F  S       P                                    RN+    IAPT
Sbjct: 387 GFPTSALAHAGRP-----------------------------------RRNATVTTIAPT 411

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            T+A I G S  I+P +   YV+  +          LV E  +    D A+ +       
Sbjct: 412 GTLALIAGCSSGIEPLFALAYVRRALDDSELREEHPLVAEALRAAGADAALAAVRAAGR- 470

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
               +  +P  + ++ ATA ++ P   +   +  Q+  D   S  + L    +   +   
Sbjct: 471 -ARGVPGVPPAVARLFATAHDVAPEAHVRMQAAFQRHTDNGVSKTINLPRSAAVDDVARA 529

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           Y  A+ +G K     R  S      ++    +G+
Sbjct: 530 YALAYELGCKGITVYRDGSRERQVLTSGATRNGE 563


>gi|313206312|ref|YP_004045489.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella
           anatipestifer DSM 15868]
 gi|312445628|gb|ADQ81983.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella
           anatipestifer DSM 15868]
 gi|315023178|gb|EFT36189.1| ribonucleotide-diphosphate reductase subunit alpha [Riemerella
           anatipestifer RA-YM]
 gi|325336243|gb|ADZ12517.1| Ribonucleotide reductase, alpha subunit [Riemerella anatipestifer
           RA-GD]
          Length = 551

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 262/633 (41%), Gaps = 120/633 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348
                 Q+L   Y L       E       R+    A  L   E +       F  ++  
Sbjct: 10  LNEESEQMLNRGYLLKG-----ETVHGAIKRITTAAAKRLYKPELQP-----AFEEMIVK 59

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                S+P   N GT+     SCF   +PD + GI   + E  M  K  GG    +  +R
Sbjct: 60  GWISFSSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELR 119

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++  
Sbjct: 120 HRGTAVTD-NGKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLTIK-- 176

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D      ++ T   +PD +M+ +                                   
Sbjct: 177 --DIGSPIQNLFTGVCVPDYWMQDMIDGD------------------------------- 203

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585
                      I    +W K+L    + G P++ F D  N   PQ +      V++SNLC
Sbjct: 204 -----------IDKRKIWAKVLESRQQKGLPYVFFTDNVNRNKPQVYKDKGLLVNASNLC 252

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           +EI L S+ EE+ +C L S+NL        +D  K  + ++ A+  LD V+       E 
Sbjct: 253 SEIMLPSTQEESFICCLSSMNLE------LYDEWKDTNAVKLAIYFLDAVLSEFIEKTEG 306

Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                        HRA+GLG++G+ S L    IP+ S EA +    + + I   A +AS 
Sbjct: 307 NYYLQGARNFAMKHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFKHIKEQAEAASK 366

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA   G     KG                                           GMR
Sbjct: 367 ELANIYGEPELLKG------------------------------------------YGMR 384

Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+  MAIAPT + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E
Sbjct: 385 NTTLMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLKKLLEEKGLENE 444

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
               ++  + GS+ +++ + ++ K +  T  EI PM +I  A++RQ++IDQAQSLNL + 
Sbjct: 445 ETWRNIMLNHGSVQHLDGLTEEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQIP 504

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                K ++F+  +AW  G+KT YY RS S + 
Sbjct: 505 STMPVKDVNFLMIEAWKKGIKTLYYQRSSSVSK 537


>gi|255535949|ref|YP_003096320.1| ribonucleotide-diphosphate reductase subunit alpha
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342145|gb|ACU08258.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Flavobacteriaceae bacterium 3519-10]
          Length = 551

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 264/633 (41%), Gaps = 120/633 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348
                 Q+L   Y L       E  +    R+    A  L   E +       F  +++ 
Sbjct: 10  LNEESEQMLNRGYLLKG-----ETVKGAIERITTAAAKRLYKPELQP-----AFEEMITK 59

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                S+P   N GT+     SCF   VPD + GI   L E  M  K  GG    +  +R
Sbjct: 60  GWISFSSPVWANMGTQRGLPISCFNVHVPDHIEGITHKLGEVIMQTKIGGGTSGYFGELR 119

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++  
Sbjct: 120 NRGTAVTD-NGKSSGAVSFMKLYDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLSIK-- 176

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D      ++ T   +PD +M+ +                                   
Sbjct: 177 --DIGSPIQNLFTGICVPDYWMQDMIDGD------------------------------- 203

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585
                      +    +W ++L    + G P+I F D  N   PQ +      +++SNLC
Sbjct: 204 -----------MDKRKIWARVLESRQQKGLPYILFSDNVNRNKPQVYKDLGMTINASNLC 252

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           +EI L S++EE+ +C L S+NL        +D  K  + ++ A+  LD V+       E 
Sbjct: 253 SEIMLPSNAEESFICCLSSMNLE------LYDEWKDTNAVKLAIYFLDAVLSEFIEKTEG 306

Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                        HRA+GLG++G+ S L    IP+ S EA +    +   I   +++AS 
Sbjct: 307 NYYLTGARNFALRHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFRQIKEQSLAASQ 366

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA   G     KG                                           GMR
Sbjct: 367 ELANIYGEPELLKG------------------------------------------YGMR 384

Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+  MAIAPT + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E
Sbjct: 385 NTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLAKLLQEKGLDNE 444

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                +  + GS+ ++  + ++ K +  T  EI PM +I  A++RQ++IDQAQSLNL + 
Sbjct: 445 ETWRTIMLNHGSVQHLNELTEEEKAVFKTFREISPMEIISQAAQRQQYIDQAQSLNLQIP 504

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                K ++++Y +AW  G+KT YY RS S + 
Sbjct: 505 STMPVKDVNYLYIEAWKKGVKTLYYQRSSSVSK 537


>gi|308233464|ref|ZP_07664201.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium
           vaginae DSM 15829]
          Length = 735

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 183/788 (23%), Positives = 318/788 (40%), Gaps = 82/788 (10%)

Query: 193 LSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
           +S S  ++ +  ++ T    ++ +Y             ++ +    K+  +      +  
Sbjct: 1   MSTSTTDSYIALNALTRFKTEDGHYNFSA--------DKKAVQLYLKEQVEPRLKTFES- 51

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
             +     +E     + + +     D+  L +    +       +G    Y  Y L  + 
Sbjct: 52  CQQRLDYLVEHQYYDKAVLDLYSQEDIEALTSLAYEQHFEFLSLMGAMKFYMAYALQSDD 111

Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
               +E  +    RV M            A      L S  F  +TPT  N+G +   + 
Sbjct: 112 RTTYLERFED---RVVMCALFLANGDVALARNLVLDLMSNRFQPATPTFLNAGKKRRGEY 168

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SC+L  V D++  I   +  +  L+K  GG+    T +R  GA I G   ++ GV+P +
Sbjct: 169 ISCYLLRVEDNMESIARGIGTSLQLSKRGGGVALCLTNLRETGAPIKGFAHQASGVVPVM 228

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  DT    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+
Sbjct: 229 KLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKSLSLGVIVPDI 288

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             K   +N    LFSP ++   +     +     E Y+   +   IK    ISA   ++ 
Sbjct: 289 TFKLAKENKDMALFSPYDIEKEYKCSMADMS-ITEKYDELVNNPRIKKD-YISARKFFQT 346

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA---------- 598
           +  + FE+G+P+I F+D  N R+P +  G +  SNLC+EI   S+               
Sbjct: 347 IAELQFESGYPYILFEDTVNRRNPHKKAGRIVMSNLCSEIAQVSTPSSYTEDLGFTQTGV 406

Query: 599 --VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRA 655
              CNLGSIN+ A   +      + + TI+ A+  LD V    +        K N  + A
Sbjct: 407 DICCNLGSINIAAAMDHA----SEFSRTIKDAIVALDRVSRSSDLSCAPSVNKGNKLNHA 462

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG M     L   HI YAS EAV+  D     +++HA  AS ELAQ  GA++ F  S 
Sbjct: 463 VGLGAMNLHGFLATHHIYYASAEAVDFVDMFFYAMAYHAFKASSELAQTEGAFAGFADSE 522

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +               +A++  +      ++  W EL K ++  G+ NS+ MA+A
Sbjct: 523 YADGTYFKKYTEHKIAPATPRIAKLLADCHFELPTQQDWQELVKDIRAHGLANSHLMAVA 582

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + S+ P    +  +         V ++                      
Sbjct: 583 PTGSISYLSSCTPSLQPVVSPVETRKEGKVGRVYVPAY---------------------- 620

Query: 828 DGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                   +I DD  K +   A+E+    +I   +  QK +DQA SL L++    + + L
Sbjct: 621 --------KISDDTYKYYQDGAYEVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDL 672

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           +  Y  A+     + YY+R        +  +      L +  +    + +        C 
Sbjct: 673 NRAYIYAFKKKCDSIYYVR-------IRQDVLEGSEHLESDEILPDAAKSDEKKSAFHCD 725

Query: 946 SDTECEVC 953
             +EC+VC
Sbjct: 726 GSSECQVC 733


>gi|121592862|ref|YP_984758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax sp. JS42]
 gi|120604942|gb|ABM40682.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax sp. JS42]
          Length = 811

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 148/663 (22%), Positives = 251/663 (37%), Gaps = 79/663 (11%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
            + + +L ++YF           +  F RVA  LA  E E  ++A+E  F + L +    
Sbjct: 16  PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDMRQALEARFLDNLRAGAIG 71

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D           GI+ AL+E A   +  GG+G D+
Sbjct: 72  AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L             G         
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWELVHGAAPGAELQAQG--------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 239 --AHQRADGQWVYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637
           C E  L         C+LG I L     N         FD+D     + T VR LDNV+D
Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    + + +  +   R IG+G  G  + L +L   Y   E  ++A +  E +   A  A
Sbjct: 353 VTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRQEGRDMAVQIAERMRNAAYRA 412

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SVELA+E+GA+  F                   +    LA    +     +++K ++  G
Sbjct: 413 SVELAKEKGAFPKF-------------------DADGYLAKGTFASRLPADIQKAIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +      
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYA---- 508

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G + ++            +A ++     +      Q ++D A S  +
Sbjct: 509 -----WRLYKTLGGDVNHLP-------AYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            +  +        +Y QAW  GLK     R  S                 + P  +P   
Sbjct: 557 NVPEDYPYDDFKGLYMQAWHSGLKGLATYRPNSILGAVLEVPAAEAKPAKSEPAPEPVQP 616

Query: 935 THS 937
              
Sbjct: 617 FDP 619


>gi|269975272|gb|ACZ55496.1| ribonucleoside triphosphate reductase alpha chain [Staphylococcus
           phage SA1]
          Length = 744

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 165/781 (21%), Positives = 297/781 (38%), Gaps = 78/781 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I  
Sbjct: 4   TIKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDV 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 +E  Y+ +  R LL  + +E      K P   T           F + +E    
Sbjct: 62  CVDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNMERAGL 108

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
              +       +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  FM 
Sbjct: 109 WEKMD--YSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMG 166

Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM       +  + +  ++ Y  LS       TP L          +SC L    D   
Sbjct: 167 MAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +  A +    +     G+G      R +G  I     +  G +P+ K+   +  A N+ 
Sbjct: 227 SLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEA-NKQ 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+   +       +E+ L L+  T    +R ++M+ +    D F + V  +  W L
Sbjct: 285 KSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLL 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FS  +   L+D++       +      A    +K  R++ A  + +  +   + TG  + 
Sbjct: 345 FSYKDAPKLYDMFYTASADEFAMAVGHAVHSGVK-HRRVKAREIAKLFIQQRYATGRVYP 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----------GSINLLAHF 611
            F +  N  +P      +  SNLC EI L     E                 ++  LA  
Sbjct: 404 FFTNNANTHTPF--KEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFLASL 461

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +   D+ A     A+ ++D+VID+  +     +      R++G+GL      L   +
Sbjct: 462 VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTNVAHYLAKNY 521

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+S        E  E  S++   AS+ LA+ERG     + + + +G  P  +     +
Sbjct: 522 VNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMQFTKYPEGWVPPKTANRKID 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +     +   R  WD+L +R+K   G+RNS   A  P  + +     +  + P    + 
Sbjct: 582 EK----HDAKLRYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNGLYPIRDFIL 637

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K + +G+   +                                    ++LK ++  A++
Sbjct: 638 TKKSATGNVLFIVPDY--------------------------------EELKYVYEIAWD 665

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKTTYYLRS 905
           ID   LI+  +  QK+  QA S + Y+D    KK+           A  +G+KT YYL S
Sbjct: 666 IDTFDLIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVGMKTMYYLNS 725

Query: 906 R 906
           R
Sbjct: 726 R 726


>gi|229818598|ref|YP_002880124.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia
           cavernae DSM 12333]
 gi|229564511|gb|ACQ78362.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia
           cavernae DSM 12333]
          Length = 701

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 176/712 (24%), Positives = 294/712 (41%), Gaps = 74/712 (10%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R  L+K R        +   + T         E     +E G     +        + +
Sbjct: 17  GRLQLDKDRSAAREYFLQHVNQNTVFFHNL--KEKLDYLVEHGYYESEVLGKYSREFVEH 74

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338
           + +    ++     +LG    Y  Y L   +G R  E  +   + VA+ LA      E+ 
Sbjct: 75  IFDVAYAKKFRFTTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLA---DGDEQL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A+E  + + S  F  +TPT  N+G     +L SCFL  + D++  I   +     L+K  
Sbjct: 132 ALELVDEVISGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARGINSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H 
Sbjct: 192 GGVALLLSNIREYGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVP 308

Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F       +      + ++ +  I A   ++ +  + FE+G+P+I F+D  N  +P    
Sbjct: 309 FSEISVTEKYYEMLDDARIRKTKIKAREFFQLLAEIQFESGYPYIVFEDTVNRANPI--K 366

Query: 577 GVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           G +  SNLC+EI               + + +   CNLGS+N+         D   L  T
Sbjct: 367 GRITMSNLCSEILQVSTASSFNDDLSYADTGKDISCNLGSLNIAHA-----MDSPDLGKT 421

Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           +  A+R L  V D  +  ++   +K N+   AIGLG M     L    I Y S E V+  
Sbjct: 422 VGVAIRSLTAVSDQTHIWSVPSVEKGNNDSHAIGLGQMNLHGYLARERIHYGSAEGVDFT 481

Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV--------RD 734
           +     + +HAI+AS ++A ER  A++ F  S +  G F       + E           
Sbjct: 482 NIYFYTVLYHAIAASNQIAIERGSAFAGFSESQYASGEFFDKYTDGVWEPATDRVAQLFA 541

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           +  ++  ++  W  LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++  
Sbjct: 542 DAEVHIPTQSDWQALKASVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVAPIEIRKE 601

Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G       +L                                DD  + +A A+EI  
Sbjct: 602 GKIGRVYYPAPYL-------------------------------SDDNLEYYADAYEIGY 630

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 631 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|301750611|gb|ADK88939.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4]
          Length = 812

 Score =  324 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 160/655 (24%), Positives = 272/655 (41%), Gaps = 57/655 (8%)

Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKETEK-----------E 336
           +     GLQ        Y    +  R E     + R+A  LA +                
Sbjct: 163 YKVASRGLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWM 222

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLA 394
           +    F+  L S   + STP + N GT +   +SC+L           +       + + 
Sbjct: 223 EMFQYFFEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNVSTIL 282

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
            ++GG+G     +                 IP LK  +    A N+  +R   VC Y+E 
Sbjct: 283 SHNGGIGLCMQDLNDAQ-------ANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEP 335

Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
           WH D+   L  R     ++ +R  ++ +A W+PDLF KR+       ++  WTLF  +  
Sbjct: 336 WHSDIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETG 395

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DL  L+G  FE  YE+ E+Q       +  ++    +   ++      G P+I FKD  
Sbjct: 396 GDLSRLHGDAFEKRYESLEKQG------LGERVPIQDIAYAIVRSAAIAGSPFIMFKDAV 449

Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           N        G  +  SNLCTEI   +    + VCNLGS+NL     +  F +  L S +R
Sbjct: 450 NRHYIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVR 509

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             V +++ +ID       + ++  +  R++G+G+ G  +A  +L +   S +   +    
Sbjct: 510 ACVLMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLI 569

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E +   A+  S  L       +  F  S++ +GVF         + R            
Sbjct: 570 AEVMLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVF---HWERFPDARPAFP------GE 620

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++ +K  G+RNS  +A+ PT T + +  VS+S  P + N++ K    G+    N  
Sbjct: 621 WELLRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNIL 680

Query: 806 LVNELKQR--DLWDEAMISDLKYHDGS-IGNIERI-PDDLKKIHATAFEIDPMWLIESAS 861
           L+ EL++        A++  L  +  S +  +  + PD       TAF+     LI+  +
Sbjct: 681 LMRELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCA 740

Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++D +QS+ LY+ E          +  +   A+  GLKT  YY + R AT+
Sbjct: 741 DRAPYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795


>gi|159146680|gb|ABW90784.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4]
          Length = 812

 Score =  324 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 160/655 (24%), Positives = 272/655 (41%), Gaps = 57/655 (8%)

Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKETEK-----------E 336
           +     GLQ        Y    +  R E     + R+A  LA +                
Sbjct: 163 YKVASRGLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWM 222

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLA 394
           +    F+  L S   + STP + N GT +   +SC+L           +       + + 
Sbjct: 223 EMFQYFFEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNVSTIL 282

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
            ++GG+G     +                 IP LK  +    A N+  +R   VC Y+E 
Sbjct: 283 SHNGGIGLCMQDLNDAQ-------ANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEP 335

Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507
           WH D+   L  R     ++ +R  ++ +A W+PDLF KR+       ++  WTLF  +  
Sbjct: 336 WHSDIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETG 395

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            DL  L+G  FE  YE+ E+Q       +  ++    +   ++      G P+I FKD  
Sbjct: 396 GDLSRLHGDAFEKRYESLEKQG------LGERVPIQDIAYAIVRSAAIAGSPFIMFKDAV 449

Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
           N        G  +  SNLCTEI   +    + VCNLGS+NL     +  F +  L S +R
Sbjct: 450 NRHYIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVR 509

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             V +++ +ID       + ++  +  R++G+G+ G  +A  +L +   S +   +    
Sbjct: 510 ACVLMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLI 569

Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            E +   A+  S  L       +  F  S++ +GVF         + R            
Sbjct: 570 AEVMLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVF---HWERFPDARPAFP------GE 620

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W+ L++ +K  G+RNS  +A+ PT T + +  VS+S  P + N++ K    G+    N  
Sbjct: 621 WELLRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNIL 680

Query: 806 LVNELKQR--DLWDEAMISDLKYHDGS-IGNIERI-PDDLKKIHATAFEIDPMWLIESAS 861
           L+ EL++        A++  L  +  S +  +  + PD       TAF+     LI+  +
Sbjct: 681 LMRELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCA 740

Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++D +QS+ LY+ E          +  +   A+  GLKT  YY + R AT+
Sbjct: 741 DRAPYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795


>gi|260904341|ref|ZP_05912663.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           linens BL2]
          Length = 693

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 175/676 (25%), Positives = 287/676 (42%), Gaps = 64/676 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +E+      + +      +  L+      +     +LG    Y  Y L   +G
Sbjct: 39  KEKLDYLVEKEYYEPEVLDQYSFDFIEELSKHAYSAKFRFQTFLGAFKFYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA      E  A +  + +    F  +TPT  N+G +   +L 
Sbjct: 99  KRYLERFEDRVVMVALFLA---RGDETLAKQLVDEIIHGRFQPATPTFLNAGKKQRGELV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIRESGAPIKKIENQSSGVIPVMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISAVALWR 547
            +   +N    LFSP    D+  +YG  F      E YE   D   IK  + I+A   ++
Sbjct: 276 FELAKRNEDMYLFSP---YDVERVYGMPFSDVNVTEKYEEMVDNAAIKKNK-INAREFFQ 331

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----- 602
            +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI   S   +           
Sbjct: 332 TLAEIQFESGYPYVMFEDTVNKANPI--DGKIIMSNLCSEILQVSEPSKYDSDLGYDVVG 389

Query: 603 --GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
              S NL +       D      TI TA+R L  V +  +  ++    + N    AIGLG
Sbjct: 390 KDISCNLGSLNIALTMDSTDFGQTIETAIRGLTAVAETSDIQSVPSIARGNDMSHAIGLG 449

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718
            M     L   HI Y S E ++  +     +++H + AS+E+A+ER   ++ F+ S +  
Sbjct: 450 QMNLHGYLAREHIYYGSDEGLDFTNMYFYTVAYHCVRASMEIAKERKTAFAGFERSKYAS 509

Query: 719 GVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           G +       + E R         E  ++  ++  W ELK  V   G+ N N  A+ PT 
Sbjct: 510 GEYFDKYTDEVWEPRTRRVAEMFTEAGVHIPTQDDWRELKAAVAEHGIYNQNLQAVPPTG 569

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + ++     G       F+ N                     
Sbjct: 570 SISYINNSTSSIHPVASKVEIRKEGKIGRVYYPAPFMDN--------------------- 608

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888
                    D+LK  +  A+EI    +I++ +   K +DQ  SL L ++D  + + ++  
Sbjct: 609 ---------DNLK-YYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFMDTATTRDINKA 658

Query: 889 YRQAWLMGLKTTYYLR 904
              AW  G+KT YY+R
Sbjct: 659 QIYAWRKGIKTIYYIR 674


>gi|228473105|ref|ZP_04057862.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275687|gb|EEK14464.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 551

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 173/642 (26%), Positives = 266/642 (41%), Gaps = 121/642 (18%)

Query: 285 LKYERD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRA 339
           +  E D +       QIL   Y L       E  +    R+    A  L   E +     
Sbjct: 1   MNQENDIWWLNDESEQILNRGYLLKG-----ESVEGAIERITSAAAKRLYKPELQP---- 51

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
             F  +++      S+P   N GT      SCF   +PD + GI   L E  M  K  GG
Sbjct: 52  -AFKEMITKGWISFSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGG 110

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
               +  +R  G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D 
Sbjct: 111 TSGYFGELRHRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDA 169

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEFL ++    D      ++     +PD +M+ + +                       E
Sbjct: 170 EEFLQIK----DTGYHIQNLFFGVCVPDYWMQEMIEGDT--------------------E 205

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--- 576
                                    LW ++L    + G P+I F D  N + PQ +    
Sbjct: 206 KR----------------------KLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNN 243

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
             +H+SNLC+EI L SS EE+ +C L S+NL        FD  K    ++ A+  LD V+
Sbjct: 244 MFIHASNLCSEIMLPSSEEESFICCLSSMNLE------LFDEWKDTKAVKLAIFFLDAVL 297

Query: 637 DINCHTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
                  +              HRA+GLG++G+ S L    IP+ S EA +    + + I
Sbjct: 298 SEFIEKTKGNYYLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFQHI 357

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A  A+ ELA   G     KG                                     
Sbjct: 358 QSEAEKATQELAHIYGEPELLKG------------------------------------- 380

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                 G RN+  MAIAPT + + I G VS  I+P   N Y      G+F   N +L   
Sbjct: 381 -----YGRRNATTMAIAPTTSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNKYLTQL 435

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           L+++ L +E +   ++  DGS+ +++ +  + K +  T  EI PM +I  A++RQ++IDQ
Sbjct: 436 LEEKGLNNEDIWRSIRLSDGSVQHLQELTQEEKNVFKTFKEISPMEIITQAAQRQQYIDQ 495

Query: 870 AQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +QSLNL +      + ++ +  +AW +G+K+ YY RS+S   
Sbjct: 496 SQSLNLNIPPTMPIRDVNKVLIEAWKLGVKSLYYQRSQSVAK 537


>gi|224826411|ref|ZP_03699513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Lutiella nitroferrum 2002]
 gi|224601512|gb|EEG07693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Lutiella nitroferrum 2002]
          Length = 949

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 150/629 (23%), Positives = 264/629 (41%), Gaps = 76/629 (12%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381
           RVA  LA  E E  +    F++ L    F+        +GT     L +CF+  V D + 
Sbjct: 37  RVARALAGIEAEPARYEAAFFDALQRG-FIPGGRINSAAGTELKATLINCFVQPVGDAVS 95

Query: 382 -------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
                  GI+ AL + A   +  GG+G +++ +R  GA + GT+ ++ G + +++V + +
Sbjct: 96  ESEGGKVGIYEALLQAAETMRRGGGVGYNFSRIRPKGARVKGTHSRASGPVSYMRVFDRS 155

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V   G R+GA    L   H DVE+F+  +     D+    + N +  + D FM+ V 
Sbjct: 156 CETVESAGSRRGAQMGVLNIEHPDVEDFIHAK-----DQGDLKNFNISVGVSDAFMQAVE 210

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W L     V    D + + F               + V+R + A  LWR+++   +
Sbjct: 211 ADGPWQLV--HAVEPASDAFPEAFRR----------DDGLWVYRTVRARELWRQIMESTY 258

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           +   P + F    N  +   +  V+ S+N C E  L     +   C+LGSINL A   + 
Sbjct: 259 DHAEPGVLFLSQINRDNNLSYCEVIESTNPCGEQPLP----DYGCCDLGSINLAAFVEHP 314

Query: 615 Q-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 FD+    + +R+A+R+LDNV+D+    + + ++     R +GLG  G   AL L
Sbjct: 315 FTRRARFDFKAFETVVRSAIRMLDNVLDLTVWPLPEQQREAQAKRRVGLGFTGLGDALIL 374

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L I Y SP+  ++A +  E +   A  ASV+LA E+GA+  F    +             
Sbjct: 375 LQIAYNSPQGRQMAAKFAETMRDAAYDASVDLAIEKGAFPLFDADNY------------- 421

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQ 787
                 LA    +    + +K R++  G+RNS+ ++IAPT TI+       S  I+P + 
Sbjct: 422 ------LAEPHCASRLPEAIKARIRQHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-HDGSIGNIERIPDDLKKIHA 846
             Y +              + +  Q++   E     L   + G +       + L     
Sbjct: 476 WYYTRKKR-----------MADGSQQEYRVEDHAYRLYRLNGGDV-------EKLPPYFV 517

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +A E+  +  ++  +    +ID A S  + +  +    + + +Y +AW  GLK     R 
Sbjct: 518 SALEMSALDHMQMVAAVAPYIDTAISKTVNVPADYPFDEFEHLYLEAWKAGLKGITTYRP 577

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            S      S         + +   + +  
Sbjct: 578 NSVLGSVLSVEPAQAAPQDLLASQEGDPD 606


>gi|38707873|ref|NP_944991.1| Ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage Felix 01]
 gi|33340476|gb|AAQ14827.1| putative ribonucleoside triphosphate reductase alpha chain
           [Enterobacteria phage Felix 01]
          Length = 744

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 165/781 (21%), Positives = 297/781 (38%), Gaps = 78/781 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I  
Sbjct: 4   TIKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDV 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 +E  Y+ +  R LL  + +E      K P   T           F + +E    
Sbjct: 62  CVDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNMERAGL 108

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
              +       +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  FM 
Sbjct: 109 WEKMD--YSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMG 166

Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM       +  + +  ++ Y  LS       TP L          +SC L    D   
Sbjct: 167 MAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +  A +    +     G+G      R +G  I     +  G +P+ K+   +  A N+ 
Sbjct: 227 SLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEA-NKQ 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+   +       +E+ L L+  T    +R ++M+ +    D F + V  +  W L
Sbjct: 285 KSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLL 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FS  +   L+D++       +      A    +K  R++ A  + +  +   + TG  + 
Sbjct: 345 FSYKDAPKLYDMFYTASADEFAMAVGHAVHSGVK-HRRVKAREIAKLFIQQRYATGRVYP 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----------GSINLLAHF 611
            F +  N  +P      +  SNLC EI L     E                 ++  LA  
Sbjct: 404 FFTNNANTHTPF--KEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFLASL 461

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +   D+ A     A+ ++D+VID+  +     +      R++G+GL      L   +
Sbjct: 462 VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTNVAHYLAKNY 521

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+S        E  E  S++   AS+ LA+ERG     K + + +G  P  +     +
Sbjct: 522 VNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGWVPPKTANKKID 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +     +   R  WD+L +R+K   G+RNS   A  P  + +     +  + P    + 
Sbjct: 582 EK----HDAKLRYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNGLYPIRDFIL 637

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K + +G+   +                                    ++LK ++  A++
Sbjct: 638 TKKSATGNVLFIVPDY--------------------------------EELKYVYEIAWD 665

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKTTYYLRS 905
           ID   +I+  +  QK+  QA S + Y+D    KK+           A  +G+KT YYL S
Sbjct: 666 IDTFDMIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVGMKTMYYLNS 725

Query: 906 R 906
           R
Sbjct: 726 R 726


>gi|251797975|ref|YP_003012706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. JDR-2]
 gi|247545601|gb|ACT02620.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. JDR-2]
          Length = 864

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 139/619 (22%), Positives = 256/619 (41%), Gaps = 61/619 (9%)

Query: 312 SRIEMPQAFFMRVA---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +  + P+  + R+A    G+   E ++      F  +L  +  +        +G      
Sbjct: 81  TIEKTPEEMWNRLAGAMAGVEQGEEKRRTWTERFRYILDDWKLVPGGRIAAGAGASDELT 140

Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           L +C++   P D   GI   L E   +    GG+G + + +R   A + G NG S G + 
Sbjct: 141 LFNCYVIPSPKDSRGGIMTTLSEMTEIMARGGGVGINLSSLRPRRAVVAGVNGSSSGAVS 200

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           +  + + T   + QGG R+GA+   +  WH DV +F+ +++  G    +  + N +  + 
Sbjct: 201 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVS 256

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FMK V ++  W L  PD     +D        A++   ++        ++ + A  +W
Sbjct: 257 NAFMKAVKEDLDWELVFPDTKETDYDELWDGDLEAWKKLGKKVVH-----YKTVRARDVW 311

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +++  P + F +  N  S   +   +  +N C E  L        VCNL +IN
Sbjct: 312 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAIN 367

Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L   +  ++ D  +++L    + +VR LDNVID   +  E+ +K+    R +GLG MG  
Sbjct: 368 LSKFYDESKHDVNWEELGKVTQWSVRFLDNVIDTTPYHFEENEKNQKKERRVGLGTMGLA 427

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             +  L + Y SPE++   D+   F++  A  AS E+A E+G++ +F    + Q  F  +
Sbjct: 428 ELMIKLGVRYGSPESLLFLDKIYGFMAREAYLASAEIASEKGSFEAFDAEKFLQSGFMKN 487

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
            +                   + E+ + V   GMRN   +  APT +   + G S  I+P
Sbjct: 488 MV-----------------SEFPEVGEAVLAKGMRNVTVITQAPTGSTGTMVGTSTGIEP 530

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            +   Y + +  G     +  LV   +    W +        H G         ++L   
Sbjct: 531 YFAFEYFRQSRLG----FDKQLVPIAQA---WKD-------AHPG---------EELPDY 567

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
             TA  +     I   +  Q+W+D + S       + + ++   +Y  A+ +G K     
Sbjct: 568 FVTAMNLSAKDHIRVQAAIQRWVDSSISKTANCPSDFTVEETKELYEMAFDLGCKGVTIY 627

Query: 904 RSRSATSVEKSTLKGVDGK 922
           R  S      ST K  +  
Sbjct: 628 RDGSRDVQVLSTKKDDEKP 646


>gi|213963757|ref|ZP_03392007.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sputigena Capno]
 gi|213953637|gb|EEB64969.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sputigena Capno]
          Length = 551

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 174/639 (27%), Positives = 264/639 (41%), Gaps = 115/639 (17%)

Query: 285 LKYERD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEF 342
           +  E+D +       QIL   Y L   G  +E       R A   L   E +       F
Sbjct: 1   MNEEKDIWWLNEESEQILNRGYLLK--GESVEGAIDRITRAAAQRLYKPELQP-----AF 53

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             +++      S+P   N GT      SCF   VPD + GI   L E  M  K  GG   
Sbjct: 54  KEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSG 113

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
            +  +R  G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D EEF
Sbjct: 114 YFGELRSRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEF 172

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           L ++    D      ++     +PD +M+ +                             
Sbjct: 173 LQIK----DVEFPIQNLFFGICVPDYWMQEMIDGD------------------------- 203

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVV 579
                            +    LW ++L    + G P+I F D  N   PQ +     ++
Sbjct: 204 -----------------VEKRRLWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMII 246

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            SSNLC+EI L SS +E+ +C L S+NL        FD  K    ++ AV  LD V+   
Sbjct: 247 RSSNLCSEIMLPSSEDESFICCLSSMNLE------LFDEWKDTKAVKLAVFFLDAVLSEF 300

Query: 640 CHTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
               +              HRA+GLG++G+ S L    IP+ S EA +    + ++I   
Sbjct: 301 IEKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFKYIREE 360

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  A+ ELA   G     KG                                        
Sbjct: 361 AEKATKELAHIYGEPEVLKG---------------------------------------- 380

Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
              G RN+  MAIAPT + + I G VS  I+P   N Y      G+F   N +L   L++
Sbjct: 381 --YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEE 438

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + L +E +   ++ ++GS+ +++ +    K +  T  EI PM +I  A++RQ +IDQ QS
Sbjct: 439 KGLNNEDVWRSIRLNNGSVQHLQELTQQEKNVFKTFKEISPMEIISQAAQRQAYIDQTQS 498

Query: 873 LNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           LNL +      K ++ +  +AW +G+K+ YY RS+S   
Sbjct: 499 LNLNIPSVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVAK 537


>gi|119897702|ref|YP_932915.1| putative ribonucleoside reductase [Azoarcus sp. BH72]
 gi|119670115|emb|CAL94028.1| conserved hypothetical ribonucleoside reductase [Azoarcus sp. BH72]
          Length = 958

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 152/638 (23%), Positives = 249/638 (39%), Gaps = 80/638 (12%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------G 382
            E ++     +F        F+ +      +GT     L +CF+  V D +        G
Sbjct: 54  PEEKRAHWEAKFLE-AQEKGFVPAGRINSAAGTSLAATLINCFVQPVGDSVTEAVDGRPG 112

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ AL + A   +  GG+G D++ +R  GA + GT   + G + +++V + +   V   G
Sbjct: 113 IYTALAQAAETMRRGGGVGYDFSSIRPKGAMVRGTASNASGPVSYMRVFDRSCETVESAG 172

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA    L   H D+EEF+  +     D     + N +  + D FM+ V  +    L 
Sbjct: 173 ARRGAQMGVLRCDHPDIEEFIHAK-----DHGDLTNFNISVGVTDDFMRAVESDGDIELT 227

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
              E SD     G                    V+RK+ A ALW +++   ++   P I 
Sbjct: 228 HKSEPSDELKAAGAYQRDDGRW-----------VYRKVPARALWDQVMRSTYDHAEPGIL 276

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FD 617
           F D  N  +   +   + ++N C E  L         C LGS+NL     N       FD
Sbjct: 277 FLDRMNQDNNLYYCETIEATNPCAEQPLPPY----GCCCLGSVNLTPFVKNPFTDKAEFD 332

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y      +  ++R+LDNV+D     +E+ ++   + R +GLG  G   AL +L   Y S 
Sbjct: 333 YAAFGKVVDVSIRMLDNVLDATHWPLEQQQREADSKRRVGLGFTGLGDALIMLGKRYDSD 392

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E A +  E++   A  AS ELA+ERGA+  F   ++  G                  
Sbjct: 393 EAREEARKISEYMRNRAYLASTELAKERGAFPLFNADMYLSGGNF--------------- 437

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795
               +     E+K +++  G+RNS+ ++IAPT TI+       S  I+P +   Y +   
Sbjct: 438 ----ASRLPAEVKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFSYTYTRRKR 493

Query: 796 --SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G F     + V +               K+  G++       + L     TA EI  
Sbjct: 494 MADGTFK---EYAVEDYA---------WRLYKHLGGNV-------EQLPSYFVTALEISA 534

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
               +  +    +ID + S  + +  +      + +Y  AW  GLK     R  S     
Sbjct: 535 QAHKDMVAAVAPYIDTSISKTVNVPEDYPYADFEDLYLTAWKAGLKGLATYRPNSVLGSV 594

Query: 913 KS---TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            S   T +        +P  +   S  SL  P   +  
Sbjct: 595 LSVAPTSEQKQPHDVEIPDANKRLSIKSLPAPVLASLR 632


>gi|256825535|ref|YP_003149495.1| vitamin B12-dependent ribonucleotide reductase [Kytococcus
           sedentarius DSM 20547]
 gi|256688928|gb|ACV06730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Kytococcus sedentarius DSM 20547]
          Length = 985

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/631 (20%), Positives = 235/631 (37%), Gaps = 34/631 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E    L    F  ++P  FN GT+   Q+S+CF+ +V D +  I  
Sbjct: 110 GYFATEDDALVFEHELTYALLHQIFSFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILN 169

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 170 WYREEGFIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 228

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF+D +    D  R   D              +           
Sbjct: 229 RAAKMVVLDVDHPDIVEFIDTKAREEDKIRALRDAGF----------DMDLGGDDITSVQ 278

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWIT 562
            + ++       EF  A EN E    R      V   ++A  L+ +M    +E   P I 
Sbjct: 279 YQNANNSVRVSDEFMRAVENGEEFGLRSRSTGDVIETVNAADLFTRMAKAAWECADPGIQ 338

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKL 621
           + D  N        G +++SN C+E      S + + CNL S+NLL     ++ FD ++ 
Sbjct: 339 YDDTINHWHTNPESGRINASNPCSEYM----SLDNSSCNLASLNLLKFLNDDDTFDVERF 394

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +     +  +D  I       +   ++    R +G+G     + L      Y S    +
Sbjct: 395 QAVTELVITAMDISICFADFPTDPIGETTRNFRQLGIGYANLGALLMATGHGYDSEGGRQ 454

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN-- 739
           +A      ++  +   S ELA   G Y+ +  +               AE+     M+  
Sbjct: 455 LAAAITSLLTGASYKRSAELAAVVGPYNGYARNAEAHNRVMRQHRDANAELAPLHEMDAH 514

Query: 740 --RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNM 795
               +   WD +       G RN+    +APT TI  +    +  I+P +  + + K   
Sbjct: 515 IQDAATEAWDAVVALGDEHGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVG 574

Query: 796 SGDFTVVNSFLVNELKQRDLW---DEAMISDLKYHDGSIGNIERIPDDLKKIHATAF--- 849
            G   +VN  +   LK         +A++  +  H G + +   + ++  +I  TA    
Sbjct: 575 GGSMQIVNQTIPRALKLLGYDQAATDAIVEYIAEH-GHVVDAPGLAEEHYEIFDTAMGER 633

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I PM  +   +  Q ++  A S  + L E  + ++++ +Y + W  GLK     R    
Sbjct: 634 AIAPMGHVRMMAAVQPFLSGAISKTVNLPERATVEEIEEVYLEGWKSGLKALAVYRDNCK 693

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
                S+ KG +            +S   + 
Sbjct: 694 VGQPLSSGKGENKGSADDGTPASEASAAPVE 724


>gi|326772790|ref|ZP_08232074.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           viscosus C505]
 gi|326637422|gb|EGE38324.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           viscosus C505]
          Length = 718

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 180/750 (24%), Positives = 305/750 (40%), Gaps = 87/750 (11%)

Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +S  +L+   + +   L + +     +     AR    +   +     +   +K  + 
Sbjct: 11  ETVSSPELDYHALNAKLNLYDADGRIQFDADHEAARQYFLQHVNQNTVFFHDLEEKLEY- 69

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                        +EEG     + +      +          +     +LG    Y  Y 
Sbjct: 70  ------------LVEEGYYEGHILDKYSPEFVKSAFKAAYAHKFRFETFLGAFKYYTSYT 117

Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   +G R  E  +     VA+ LA      E+ A++  + + S  F  +TPT  N G  
Sbjct: 118 LKTFDGKRYLERFEDRVTMVALTLA---DGDEQLALDLVDEMMSGRFQPATPTFLNEGKA 174

Query: 365 HP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +  SCFL  + D++  I   +     L+K  GG+    + +R +GA I     +S G
Sbjct: 175 QRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSG 234

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 235 VIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKIS 541
            IPD+  +    N    LFSP    D+  +YG  F      E Y    D G IK  +KI+
Sbjct: 295 VIPDITFELARNNEDMYLFSP---YDVERVYGMPFADINVTEKYREMVDDGRIKK-KKIN 350

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLN 591
           A   ++ +  + FE+G+P++ F+D  N  +P             +  V   +   E    
Sbjct: 351 ARTFFQTLAEIQFESGYPYVMFEDTVNKANPIKGKVVMSNLCSEILQVSEPSELNEDLTY 410

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650
           +   +   CNLGS+N+         D    A TIRTAVR L  V D  +  ++    + N
Sbjct: 411 AHVGKDISCNLGSLNIAKT-----MDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGN 465

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
           H   AIGLG M     L    I Y S E ++  +     + F A++AS E+A ER  ++ 
Sbjct: 466 HESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFV 525

Query: 710 SFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G F    +          + E+    +++  +R  W EL +++K  G+ N 
Sbjct: 526 GFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAEKIKKGGLYNR 585

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
           N  A+ PT +I+ I   + SI P    + ++     G       F+ N+           
Sbjct: 586 NLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND----------- 634

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                 + +  A+EI P  +I++ +   + +DQ  SL L+  + 
Sbjct: 635 --------------------NLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDT 674

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            + + ++     AW  G+KT YY+R R A 
Sbjct: 675 ATTRDVNRAQIYAWRKGIKTLYYIRLRQAA 704


>gi|38638229|ref|NP_944412.1| ribonucleotide reductase subunit 1 [Psittacid herpesvirus 1]
 gi|81987372|sp|Q6UDJ2|RIR1_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|34500235|gb|AAQ73718.1| ICP6 [Psittacid herpesvirus 1]
          Length = 811

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 165/703 (23%), Positives = 258/703 (36%), Gaps = 90/703 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------------- 341
              +     Y   +   R+E    FF+R+A   A      +  A                
Sbjct: 155 QSARKFESMYLGKLKNGRLESVGQFFLRIAAEAARGVANNDAFAAAVFRDGTRAPDANTV 214

Query: 342 ---FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQENAMLAKY 396
              F+  L     +  TP +  +GT     +SCFL  V        +    +E   +   
Sbjct: 215 FCLFFMALCRQEIVPPTPVMLFAGTESRSYASCFLLDVRGRHTRDVLTSIAEEIIPVMHS 274

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+G                +  S G++  LK  +    A N    R   +C Y+E WH
Sbjct: 275 HGGIGLYMDC-------DSNWDDNSSGMMLALKALDSIIAASNAVSARPSGLCVYVEPWH 327

Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
            D+ + L  R     ++  R  +   A W+PDLFMKR   N  WTLF       L DLYG
Sbjct: 328 RDIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLFDGRAAH-LSDLYG 386

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           +EFE  YE  ER+             A  +   ++     TG P++ FK   N       
Sbjct: 387 EEFEKEYELLERKNV-----GIATYPARDVMFALIKSAVSTGTPFVMFKHAVNRNYFFDM 441

Query: 576 VGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLAST 624
            G  +  SNLCTEI   +  E   VCNL S+NL A                FDY      
Sbjct: 442 AGRAMKCSNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPGTPPIGTFDYSSFRDA 501

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
              A   ++ ++ ++   I++A   N   R+IG+G+ GF +A  L      S EA     
Sbjct: 502 CAVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLLQGFGLDSVEACRFNG 561

Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           +  E ++      S  + +     +  F  S + +G   +D                   
Sbjct: 562 KLFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPA----------RHLYF 611

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             WD L++ +K  G+ N   +A+ PTA+ + +  VS+ I P + N++ K   +G+   +N
Sbjct: 612 DGWDRLRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIFSKITTTGEDIQLN 671

Query: 804 SFLVNELKQRDLWDEAMISDLKY---HDGSIGNI--ERIP-DDLKKIHATAFEIDPMWLI 857
             L+  ++            L+    +  S        +P         TAFE D   L+
Sbjct: 672 VALMETIECLYPNKAERRDILERLHKNKWSTRGAFGAALPSQHPLTKFDTAFEADQEHLL 731

Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
             ++ R  ++D +QS  LY+ E         ++  +   A+  GLKT  YY + R AT  
Sbjct: 732 RLSADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMYYCKVRKATD- 790

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                       N V +                  D  C  CQ
Sbjct: 791 ------------NGVFLGTDT----------CRRDDPTCLACQ 811


>gi|329947188|ref|ZP_08294512.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328525700|gb|EGF52726.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 718

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 182/750 (24%), Positives = 303/750 (40%), Gaps = 87/750 (11%)

Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +S  DL+   + +   L +       +     AR    +   +     +   +K  + 
Sbjct: 11  ETVSSPDLDYHALNAKLNLYDANGRIQFDADHEAARQYFLQHVNQNTVFFHDLEEKLEY- 69

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                        +EEG     + +      +          +     +LG    Y  Y 
Sbjct: 70  ------------LVEEGYYEGHILDKYSPEFVKDAFKAAYAHKFRFETFLGAFKYYTSYT 117

Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   +G R  E  +     VA+ LA      E+ A++  + + S  F  +TPT  N G  
Sbjct: 118 LKTFDGKRYLERFEDRVTMVALTLA---DGDEQLALDLIDEMMSGRFQPATPTFLNEGKA 174

Query: 365 HP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +  SCFL  + D++  I   +     L+K  GG+    + +R +GA I     +S G
Sbjct: 175 QRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSG 234

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 235 VIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKIS 541
            IPD+  +    N    LFSP    D+  +YG  F      E Y    D G IK  +KI+
Sbjct: 295 VIPDITFELARNNEDMYLFSP---YDVERVYGMPFADVNVTEKYHEMVDDGRIKK-KKIN 350

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLN 591
           A   ++ +  + FE+G+P++ F+D  N  +P             +  V   +   E    
Sbjct: 351 ARTFFQTLAEIQFESGYPYVMFEDTVNKANPIKGKVVMSNLCSEILQVSEPSRLNEDLTF 410

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650
           +   +   CNLGS+N+         D    A TIRTAVR L  V D  +  ++    + N
Sbjct: 411 AHVGKDISCNLGSLNIAKT-----MDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGN 465

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
           H   AIGLG M     L    I Y S E ++  +     + F A++AS E+A ER  ++ 
Sbjct: 466 HESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFACVLFAALTASNEMAVERGESFV 525

Query: 710 SFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G F    +          + E+    +++  +R  W EL  +VK  G+ N 
Sbjct: 526 GFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAAKVKKGGLYNR 585

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
           N  A+ PT +I+ I   + SI P    + ++     G       F+ N+           
Sbjct: 586 NLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND----------- 634

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                 + +  A+EI P  +I++ +   + +DQ  SL L+  + 
Sbjct: 635 --------------------NLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDT 674

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            + + ++     AW  G+KT YY+R R A 
Sbjct: 675 ATTRDVNRAQIYAWRKGIKTLYYIRLRQAA 704


>gi|146301801|ref|YP_001196392.1| ribonucleotide-diphosphate reductase subunit alpha [Flavobacterium
           johnsoniae UW101]
 gi|146156219|gb|ABQ07073.1| ribonucleoside-diphosphate reductase, alpha chain [Flavobacterium
           johnsoniae UW101]
          Length = 565

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 165/623 (26%), Positives = 257/623 (41%), Gaps = 112/623 (17%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QIL   Y L       E  +    R+    A +  + E +   F  ++       S+P  
Sbjct: 30  QILNRGYLLKG-----ETVEGAIDRICTAAARRLYKPELK-ESFVEMIERGWMSISSPVW 83

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   VPD + GI   L E  M  K  GG    +  +R  G+ +   N
Sbjct: 84  ANMGTERGLPISCFNVHVPDKIEGITHKLGEVIMQTKIGGGTSGYFGELRERGSAVTD-N 142

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           GKS G + F+K+ +     ++QGG R+GA  AYL+  H D+EEFL ++           +
Sbjct: 143 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIEEFLKIKSIG----NPIQN 198

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           + T   +PD +M+ +                                             
Sbjct: 199 LFTGICVPDYWMQEMIDGDA---------------------------------------- 218

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595
                 +W K+L    + G P+I F D  N   PQ +      +++SNLC+EI L S+ +
Sbjct: 219 --DKRQIWAKVLESRQQKGLPYIFFSDNVNKNKPQVYKDQNLRINASNLCSEIMLPSTHD 276

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649
           E+ +C L S+NL        ++  K    ++ A+  LD V+       E         K 
Sbjct: 277 ESFICCLSSMNLE------LYEEWKDTEAVKLAIFFLDAVLQEFIEKTEGNYYLSAANKF 330

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
              HRA+GLG++G+ S L    IP+   EA     E  + IS  A  AS ELA+  G   
Sbjct: 331 AKRHRALGLGVLGWHSYLQKNMIPFEGMEAKMKTTEIFKHISDKADKASQELARIYGEPE 390

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             KG                                           G RN+  MAIAPT
Sbjct: 391 LLKG------------------------------------------YGRRNTTTMAIAPT 408

Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E +   +  + 
Sbjct: 409 TSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLEEKGLDNEEVWRGIMLNG 468

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS+ ++ ++    K +  T  EI  + +++ A  RQK++DQ QSLNL +  E + K ++ 
Sbjct: 469 GSVQHMSQLTQQEKDVFKTFKEISQLEIVQQAGIRQKFVDQGQSLNLNIPAELAIKDVNR 528

Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910
           +  +AW  G+K+ YY RS+S + 
Sbjct: 529 LMIEAWQQGVKSLYYQRSQSVSK 551


>gi|332882773|ref|ZP_08450384.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679275|gb|EGJ52261.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 551

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 258/633 (40%), Gaps = 120/633 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348
                 QIL   Y L       E  +    R+    A  L   E +       F  +++ 
Sbjct: 10  LNEESEQILNRGYLLKG-----ESVEGAIDRITHAAARRLYKPELQP-----AFKEMITK 59

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                S+P   N GT      SCF   VPD + GI   L E  M  K  GG    +  +R
Sbjct: 60  GWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSGYFGELR 119

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D EEFL ++  
Sbjct: 120 SRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFLQIK-- 176

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D      ++     +PD +M+ +                                   
Sbjct: 177 --DVEFPIQNLFFGICVPDYWMQEMIDGD------------------------------- 203

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585
                      +    LW ++L    + G P+I F D  N   PQ +     ++ SSNLC
Sbjct: 204 -----------MEKRRLWARVLESRQQKGLPYIMFTDNANRNRPQVYKDKDMLIRSSNLC 252

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           +EI L SS EE+ +C L S+NL        FD  K    ++ AV  LD V+       + 
Sbjct: 253 SEIMLPSSEEESFICCLSSMNLE------LFDEWKDTKAVKLAVFFLDAVLSEFIEKTKG 306

Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                   K    HRA+GLG++G+ S L    IP+ S EA +    +   I   A  A+ 
Sbjct: 307 NYYLQAARKFAMRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARTFRHIREEADKATK 366

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA   G     KG                                           G R
Sbjct: 367 ELAHIYGEPELLKG------------------------------------------YGRR 384

Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+  MAIAPT + + I G VS  I+P   N Y      G+F   N +L   L+++ L +E
Sbjct: 385 NTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEEKGLNNE 444

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   ++ ++GS+ +++ +    K +  T  EI PM ++  A++RQ +IDQ QSLNL + 
Sbjct: 445 DVWRSIRLNNGSVQHLQELTQLEKNVFKTFKEISPMEIVSQAAQRQAYIDQGQSLNLNIP 504

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                K ++ +  +AW +G+K+ YY RS+S   
Sbjct: 505 SVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVAK 537


>gi|330823092|ref|YP_004386395.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans K601]
 gi|329308464|gb|AEB82879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans K601]
          Length = 811

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 145/663 (21%), Positives = 249/663 (37%), Gaps = 79/663 (11%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFM 352
            + + +L ++YF           +  F RVA  LA   +E  +E     F + L +    
Sbjct: 16  PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDIREAMQARFLDNLRAGAIG 71

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D           GI+ AL+E A   +  GG+G D+
Sbjct: 72  AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L             G E       
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWELVH-------SAAPGAELLKEGAR 240

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      ++R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 241 QRADGQ----WIYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637
           C E  L         C+LG I L     N         FD+D     + T VR LDNV+D
Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    + + +      R IG+G  G  + L +L   Y   +  ++A +  E +   A  A
Sbjct: 353 VTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYRA 412

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SVELA+E+GA+  F+                       LA    +    ++++K+++  G
Sbjct: 413 SVELAKEKGAFPKFQ-------------------ADGYLAKGTFASRLPEDIQKQIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +      
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYA---- 508

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G +  +            +A ++     +      Q ++D A S  +
Sbjct: 509 -----WRLYKTLGGDVNQLP-------AYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            +  +        +Y QAW  GLK     R  S                 + P  +P   
Sbjct: 557 NVPEDYPYDDFKGLYMQAWHSGLKGLATYRPNSILGAVLEVPAAEAKPAKSEPAPEPVQP 616

Query: 935 THS 937
              
Sbjct: 617 FDP 619


>gi|328907286|gb|EGG27052.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium sp. P08]
          Length = 974

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/651 (20%), Positives = 240/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL    F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 134 GYFASDDDVKIFGEELTWLLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 193

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 194 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 252

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 253 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 312

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 313 SDAFMTAVEQGQPFGLTSRTE--------------------------PGKVLDTVDAKEL 346

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 347 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 402

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     ++ FD  +    +   +  +D  I       E   ++    R +G+G     
Sbjct: 403 NLLKFLDEDDHFDVGRFTKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLG 462

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y+ +  +        I 
Sbjct: 463 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIK 522

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++  +   ++  WD++ K  +T G RN+    +APT TI  +    +
Sbjct: 523 HRDANRQVHPLHDNDTTVLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDT 582

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836
             I+P +  + + K    G   +VN  +   LK      E     + Y   +GS+     
Sbjct: 583 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDNGSVVGAPV 642

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y + 
Sbjct: 643 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 702

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S +K  +    A P            +P S
Sbjct: 703 WKLGLKALAVYRDNCKVGQPLSEVKKTEEDEKAEPEVRIEYRPRRQRLPKS 753


>gi|313837155|gb|EFS74869.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA2]
 gi|314927822|gb|EFS91653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL044PA1]
 gi|314971928|gb|EFT16026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA3]
          Length = 949

 Score =  322 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 133/651 (20%), Positives = 240/651 (36%), Gaps = 65/651 (9%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL    F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDVKIFGEELTWLLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMTAVEQGQPFGLTSRTE--------------------------PGKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     ++ FD  +    +   +  +D  I       E   ++    R +G+G     
Sbjct: 378 NLLKFLDEDDHFDVGRFTKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y+ +  +        I 
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIK 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++  +   ++  WD++ K  +T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHDNDTTVLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836
             I+P +  + + K    G   +VN  +   LK      E     + Y   +GS+     
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDNGSVVGAPV 617

Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y + 
Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           W +GLK     R         S +K  +    A P            +P S
Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEVKKTEEDEKAEPEVRIEYRPRRQRLPKS 728


>gi|259417280|ref|ZP_05741199.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter
           sp. TrichCH4B]
 gi|259346186|gb|EEW58000.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter
           sp. TrichCH4B]
          Length = 710

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 181/739 (24%), Positives = 307/739 (41%), Gaps = 83/739 (11%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            +DL+   + +   L + E N      R    +   +     +        H +     E
Sbjct: 7   TADLDYHALNAMLNLYDDEGNIQFDADRMAARQYFLQ-----HVNQNTVFFHSL----DE 57

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--S 312
                +E+G     + +         + +    ++     +LG    Y  Y L       
Sbjct: 58  KLGYLVEKGYYEPEVLDQYSRNFHRKIWDAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR 117

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSC 371
            +E  +    RV M         EK A++  + +    F  +TPT  N+G +   +  SC
Sbjct: 118 YLERYED---RVVMNALTLARGDEKLAMKLMSEIIDGRFQPATPTFLNAGKKARGEFVSC 174

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+ 
Sbjct: 175 FLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPVMKLL 234

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 235 EDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 294

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
              +N    LFSP +V     +YG+ F      E Y    D  +I+  +KI+A A ++ +
Sbjct: 295 LAKKNEDMYLFSPHDV---EKVYGQAFSEISVTEKYHEMVDNPQIRK-KKINARAFFQTI 350

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +     
Sbjct: 351 AEIQFESGYPYIMFEDTVNAANPI--AGRIAMSNLCSEILQVNEASEFNDDLSYAQMGTD 408

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D   LA T+ TA+R L+ V ++ +  ++   +K N    AI
Sbjct: 409 ISCNLGSMNIARA-----MDGGDLAGTVGTAIRALNAVSEMSSIDSVPSIRKGNEEGHAI 463

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L    I Y S E V+  +     + +HA+SAS  LA+E+ A +  F+ S 
Sbjct: 464 GLGQMNLHGYLARERIHYGSAEGVDFTNIYFCTVLYHALSASNALAKEKKAKFKGFEDSA 523

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F    +          + E+ +   +   +R  W+ L+ +V   G+ N N  A+ 
Sbjct: 524 YADGSFFEKYVGQDWLPETDRVKELFEAAGIEIPTRKDWEALRDKVMKHGLYNRNLQAVP 583

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N+                 
Sbjct: 584 PTGSISYINYATSSIHPITAKIEIRKEGKIGRVYYPAPYMTND----------------- 626

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
                           + +  A++I P  +I++ +   + +DQ  SL L+   E S + +
Sbjct: 627 --------------NLEYYRDAYDIGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDI 672

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 673 NRAQIYAWKKGIKTIYYIR 691


>gi|167041120|gb|ABZ05880.1| putative Ribonucleotide reductase, barrel domain protein
           [uncultured marine microorganism HF4000_001A02]
          Length = 817

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 151/665 (22%), Positives = 263/665 (39%), Gaps = 82/665 (12%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
           +  + LG  +L ++Y         E+ Q    +    +   +  ++    +FY +L  F 
Sbjct: 52  YKDDSLGADVLKNKYLAPWENHPYELWQ-RQAKALASVERTKKLRDTWEKKFYYILEDFR 110

Query: 351 FMCSTPTLFNSGTRH--PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407
           F      +  +G       L++C++  + DD +  I+  ++E A   KY GG G+D + +
Sbjct: 111 FTPGGRIMHGAGREDITTTLNNCYVVGIQDDSINSIYRTIEEEARTYKYGGGCGHDLSVL 170

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  I GT G+S G + F+ + ++    + Q G R+GA    L   H D+E+F++++ 
Sbjct: 171 RPSGDAIKGTGGESCGPVGFMNLFSENTNTIAQHG-RRGANMQTLRVDHPDIEKFIEIKT 229

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D       N +  +   FM+ V  ++ + L   D+V                    
Sbjct: 230 G---DIHMVKYSNISVLLTHRFMEAVENDSEFDLKWNDQV-------------------- 266

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                    ++ I A  LW K++     +  P + F D        ++   + S+N C E
Sbjct: 267 ---------YKTIKARQLWNKIIEHAHTSAEPGLLFWDTMIDYHNAEYCSPLVSTNPCAE 317

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVID--INCHTIE 644
             L     +   CNLGSINL         F  D+   T+  A R LDNVID  +  H +E
Sbjct: 318 QPLP----DGGCCNLGSINLERFVDGEGNFMIDEFKDTVGIATRFLDNVIDYNLERHALE 373

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             K +    R IGLG++G    L  + I Y S +A++  ++ M+     A   SVELA E
Sbjct: 374 SQKDNATKDRRIGLGILGLGDMLVRMGIKYDSDDAIQTVEQVMQIFRDGAYETSVELANE 433

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G++ SF       G      I  L                   L  ++K  G+RNS  +
Sbjct: 434 KGSFPSFDW----AGYRKSQFIKNLPRN----------------LNNKIKENGIRNSTVL 473

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            + PT + A +  V+  I+P +   Y +          N        +  ++   +I  L
Sbjct: 474 TVPPTGSGAIVARVTSGIEPIFATSYTRRVKK------NDGFGKTFNEYKVYHP-IIKKL 526

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
             +D          ++L     +A +IDP   ++     QK+ID + S  + L ++ + +
Sbjct: 527 FGND----------ENLPDYVISAHDIDPYSRVKMQGVIQKYIDSSISSTVNLKEDVTLE 576

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +  IY  A+  GLK     R  S   +  +     D K         + +  +  I   
Sbjct: 577 TVADIYMTAYKTGLKGITVYREGSREGILITEKPEKDKKSKDKAGAYQSDTKVNTVIEKR 636

Query: 944 CTSDT 948
                
Sbjct: 637 PRIRP 641


>gi|111184258|gb|ABH08178.1| HSPV074b [Horsepox virus]
          Length = 440

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 170/441 (38%), Positives = 257/441 (58%), Gaps = 19/441 (4%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D + GI+  L+  A+++K +GG+G   + +R  G++I GTNG S G+IP L+V N+TA
Sbjct: 18  MDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTA 77

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
             ++QG  KR G +  YLE WH D+  FLD +KNTG+++ RT D+  A WIPDLFMKRV 
Sbjct: 78  RYMDQGGNKRPGVMAIYLEPWHSDIMAFLDFKKNTGNEKHRTRDLFIALWIPDLFMKRVK 137

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W+L   DE S L++++G EFE  Y   +R+  +        + A  +W+ ++    
Sbjct: 138 DDGEWSLMCLDECSGLNNVWGDEFERLYTIRKRKEIQD------YMKARVVWKAIIESQI 191

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           ETG P+I +KD CN +S QQ++G +  SNLCTEI   + + E AVCNL S+ L     + 
Sbjct: 192 ETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDG 251

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
           QFD+ KL   ++  VR L+ +IDIN + I KA+ SN  HR IG+G+ G   A  LL+ P+
Sbjct: 252 QFDFFKLKDVVKVIVRNLNKIIDINYYPIPKAEISNKRHRPIGIGVQGLADAFILLNYPF 311

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA ++  +  E   + A+ AS ELA++ G Y S+  S    G+   D   ++     
Sbjct: 312 DSLEAQDLNKKIFET--YGALDASCELAEKEGPYESYVRSYASNGILQYDLWNVVP---- 365

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                 +    W  LK ++KT G+RNS  +A  PTA+ A I   ++S+ P   N+Y +  
Sbjct: 366 ------SDLWNWKPLKDKIKTYGLRNSLLVAPMPTASTAQILENNESVKPYTSNIYTRRV 419

Query: 795 MSGDFTVVNSFLVNELKQRDL 815
           +SG+F VVN  L+  L ++ L
Sbjct: 420 LSGEFQVVNPHLLRVLTEKKL 440


>gi|99080360|ref|YP_612514.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp.
           TM1040]
 gi|99036640|gb|ABF63252.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Ruegeria sp. TM1040]
          Length = 710

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 180/734 (24%), Positives = 304/734 (41%), Gaps = 73/734 (9%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            +DL+   + +   L + E N      R    +   +     +        H +     E
Sbjct: 7   TADLDYHALNAMLNLYDDEGNIQFDADRMAARQYFLQ-----HVNQNTVFFHSL----DE 57

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--S 312
                +E+G     + +         + +    ++     +LG    Y  Y L       
Sbjct: 58  KLGYLVEKGYYEPEVLDQYSRNFHRKIWDAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR 117

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSC 371
            +E  +    RV M         EK A++  + +    F  +TPT  N+G +   +  SC
Sbjct: 118 YLERYED---RVVMNALTLARGDEKLAMKLMSEIIDGRFQPATPTFLNAGKKARGEFVSC 174

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP +K+ 
Sbjct: 175 FLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPVMKLL 234

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 235 EDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 294

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
              +N    LFSP +V     +YG+ F      E Y    D  +I+  +KI+A A ++ +
Sbjct: 295 LAKKNEDMYLFSPHDV---EKVYGQAFSEISVTEKYHEMVDNPQIRK-KKINARAFFQTI 350

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNL 602
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI         N       +   
Sbjct: 351 AEIQFESGYPYIMFEDTVNAANPI--AGRIAMSNLCSEILQVNEPSKFNDDLSYEQMGTD 408

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +       D   LA T+ TA+R L+ V ++ +  ++   +K N    AIGLG M
Sbjct: 409 ISCNLGSMNIARAMDGGDLAGTVGTAIRALNAVSEMSSIDSVPSIRKGNEEGHAIGLGQM 468

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV 720
                L    I Y S E V+  +     + +HAISAS  LA+E+ + +  F+ S +  G 
Sbjct: 469 NLHGYLARERIHYGSAEGVDFTNIYFCTVLYHAISASNALAKEKKSKFKGFEDSAYADGS 528

Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           F    +          + E+ +   +   +R  W+ L+ +V   G+ N N  A+ PT +I
Sbjct: 529 FFEKYVEKDWLPETDRVKELFETAGVEIPTRKDWEALRDKVMKHGLYNRNLQAVPPTGSI 588

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G       ++ N+                      
Sbjct: 589 SYINYATSSIHPITAKIEIRKEGKIGRVYYPAPYMTND---------------------- 626

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
                      + +  A+EI P  +I++ +   + +DQ  SL L+   E S + ++    
Sbjct: 627 ---------NLEYYRDAYEIGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQI 677

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 678 YAWKKGIKTIYYIR 691


>gi|157953136|ref|YP_001498028.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus
            NY2A]
 gi|155123363|gb|ABT15231.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus
            NY2A]
          Length = 1103

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 14/358 (3%)

Query: 565  DPCNIRSPQQHVGVVH--SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
            D      P++H+GV +   +  C EI   +S EETAVC +GS+ L  +  N++FD+D L 
Sbjct: 751  DTYCFNEPKRHMGVFNGVITGQCNEIVEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLR 810

Query: 623  STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              ++   + LD  ID+  + I++A+ SN   R IG+G+ G Q     L   Y SPEA ++
Sbjct: 811  KNVKILAKNLDRSIDVMAYPIKEAETSNKLRRPIGVGVQGLQDVFFKLRFSYDSPEARDL 870

Query: 683  ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
              E  E I + A+ ASVELA+  G Y +F+GS   +G+       +  +          S
Sbjct: 871  NREIFEHIYYAAVEASVELAEIHGPYPTFEGSPASKGILQYHLWDVTPK----------S 920

Query: 743  RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
             L W  L++RVK  G+RNS   A+ PTA+ A ICG  ++ +P   NLY +  ++G+F V+
Sbjct: 921  NLDWRGLEERVKK-GIRNSLVTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVI 979

Query: 803  NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
            NS+LV EL +R  W+E M + +  + GSI  +  I   +K ++ TA+++    +I+ AS 
Sbjct: 980  NSYLVRELIERGTWNEQMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMASD 1039

Query: 863  RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGV 919
            R  ++DQ QS+NL+L +P+ K +  +    W  GLKT  YYLRS+ A+S    T+   
Sbjct: 1040 RGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPASSAIAVTIDND 1097



 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 143/463 (30%), Positives = 235/463 (50%), Gaps = 43/463 (9%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLS 183
            P+   + ++  DG+  + +  ++   ++  C               +GL  V    +++
Sbjct: 4   RPMNRLMVVLKRDGSKENISFDKILQRIQRLCWPINSKPVYKGSRAMTGLS-VDVSKIVA 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
               ++ DG+S   L+      S ++  + P+Y  + AR  +  L+++    +       
Sbjct: 63  SVCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDA---- 118

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
            + E+  L    F   IE+                    + + Y+RD+ F+Y G + +  
Sbjct: 119 -YAEIAHLLSNDFKENIEKH--------------ADEYQSFIDYDRDYDFDYFGFKTMER 163

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            Y   +N   +E PQ  ++RVA+GL   +  +     E Y+ LS   F  ++PTLFN+G 
Sbjct: 164 LYLTKVNNKIVERPQHVYLRVAIGLWGSDIARV---KETYDALSCRKFTHASPTLFNAGF 220

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +  QL+SCFL TV D L  I+  L + A L+K+ GGLG + + +RG G+ I+GTNG+S G
Sbjct: 221 KKAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINISEIRGRGSRINGTNGESDG 280

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           ++P LKV + T+   NQGG+RKG+   YLE  H DV +FL +++N G++  R  ++  A 
Sbjct: 281 IVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHSDVMDFLLMKRNQGEESLRARNLFYAV 340

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W+ DLFMKRV  +A W+LF P E   L D +G E+   YE YE      E K    + A 
Sbjct: 341 WLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYERYEA-----EGKAKNVVKAR 395

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +W  M+T + ETG P+++ KD  N ++ Q + G +  SNLC 
Sbjct: 396 DVWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNLCV 438


>gi|256820789|ref|YP_003142068.1| ribonucleotide-diphosphate reductase subunit alpha [Capnocytophaga
           ochracea DSM 7271]
 gi|315223932|ref|ZP_07865777.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
 gi|256582372|gb|ACU93507.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga
           ochracea DSM 7271]
 gi|314946104|gb|EFS98108.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
          Length = 551

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 171/638 (26%), Positives = 260/638 (40%), Gaps = 113/638 (17%)

Query: 285 LKYERD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +  E+D +       QIL   Y L   G  +E         A     K          F 
Sbjct: 1   MNEEKDIWWLNEESEQILNRGYLLK--GESVEGAIDRITSAAAHRLYKPEL----QPAFK 54

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +++      S+P   N GT      SCF   VPD + GI   L E  M  K  GG    
Sbjct: 55  EMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSGY 114

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           +  +R  G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D EEFL
Sbjct: 115 FGELRSRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFL 173

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
            ++    D      ++     +PD +M+ +                              
Sbjct: 174 QIK----DVEFPIQNLFFGICVPDYWMQEMIDGD-------------------------- 203

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVH 580
                           +    LW ++L    + G P+I F D  N   PQ +     ++ 
Sbjct: 204 ----------------VEKRRLWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMLIR 247

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           SSNLC+EI L SS +E+ +C L S+NL        FD  K    ++ AV  LD V+    
Sbjct: 248 SSNLCSEIMLPSSEDESFICCLSSMNLE------LFDEWKDTKAVKLAVFFLDAVLSEFI 301

Query: 641 HTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              +              HRA+GLG++G+ S L    IP+ S EA +    +  +I   A
Sbjct: 302 EKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFRYIREEA 361

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             A+ ELA   G     KG                                         
Sbjct: 362 DKATKELAHIYGEPEILKG----------------------------------------- 380

Query: 755 TIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+  MAIAPT + + I G VS  I+P   N Y      G+F   N +L   L+++
Sbjct: 381 -YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEEK 439

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L +E +   ++ ++GS+ +++ +    K +  T  EI PM +I  A++RQ +IDQ QSL
Sbjct: 440 GLNNEEVWRSIRLNNGSVQHLQELSQLEKNVFKTFKEISPMEIISQAAQRQAYIDQTQSL 499

Query: 874 NLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           NL +      + ++ +  +AW +G+K+ YY RS+S   
Sbjct: 500 NLNIPSAMPIRDVNKVLIEAWKLGVKSLYYQRSQSVAK 537


>gi|237729634|ref|ZP_04560115.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
 gi|226908240|gb|EEH94158.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp.
           30_2]
          Length = 714

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 177/708 (25%), Positives = 301/708 (42%), Gaps = 64/708 (9%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  + V        +  +         E     +++G     +        ++
Sbjct: 29  AGRIQFDKDHQAVEAFFAAHVRPNSVAFASQ--QERLETLVDKGYYDASVLARYDRAFVL 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337
            L +           +LG    Y  Y L   +G R  E  +     VA+ LA  +   E 
Sbjct: 87  KLFDHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVTMVALTLAQGD---ET 143

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K 
Sbjct: 144 LAMQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKR 203

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H
Sbjct: 204 GGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHH 263

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLD ++   D++ R   ++    IPD+  K   +NA   LFSP    D+  +YGK
Sbjct: 264 PDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAKENADMALFSP---YDVERIYGK 320

Query: 517 EF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            F +IA      +    E    + I+A   ++++  + FE+G+P+I F+D  N  +P   
Sbjct: 321 PFGDIAVSERYDELLADERVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNSANPI-- 378

Query: 576 VGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTA 628
            G ++ SNLC+EI   +S+             +  S NL +    +  D      T+ TA
Sbjct: 379 AGRINMSNLCSEILQVNSASTYDENLNYAQTGHDISCNLGSLNIAHTMDSPDFGRTVETA 438

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           VR L  V D+ +  ++   +  N    AIGLG M     L    I Y SPE ++  +   
Sbjct: 439 VRGLTAVSDMSHIRSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYF 498

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---M 738
             I++HA++ S+++A+ER   ++ FK S +  G +       D      +VR   A   +
Sbjct: 499 YTITWHALNTSMKIARERGQTFAGFKQSRYASGEYFNQYLQGDWQPKTDKVRALFAASGI 558

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSG 797
              +R  W +L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G
Sbjct: 559 TLPTREMWSQLREDVMHYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKTG 618

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  F+ N                               +   ++  A+EI P  +I
Sbjct: 619 RVYYPAPFMTN-------------------------------ENLALYQDAYEIGPQKII 647

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++ +   + +DQ  SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 648 DTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 695


>gi|325291516|ref|YP_004277380.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
 gi|325059369|gb|ADY63060.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
          Length = 729

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 190/766 (24%), Positives = 317/766 (41%), Gaps = 98/766 (12%)

Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKL 228
           L++  +K  ++   K++  G     L+   + +   L ++      +  ++ AR    + 
Sbjct: 9   LRNTDAKQQVTAAQKHLDAG-----LDYHALNAMLNLYDENGKIQLDKDRLAARQYFLQH 63

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
             +     +   +K  +   +  Y            +  +L +   +F          Y 
Sbjct: 64  VNQNTVFFHNLREKLDYLVTEGYY------------EQEVLDQYSFNFVRDLYDEA--YA 109

Query: 289 RDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           R F F  +LG    Y  Y L   +G R  E  +    RV M         E+ A +  + 
Sbjct: 110 RKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALALARGDEQLARDLMDE 166

Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    
Sbjct: 167 IISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSL 226

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD
Sbjct: 227 TNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLD 286

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AY 522
            ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YG  F      
Sbjct: 287 TKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSP---YDVERVYGVPFTEISVS 343

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E Y+       I+  +KI A   ++ +  + FE+G+P+I F+D  N  +P    G +  S
Sbjct: 344 EKYQEMVADSRIRK-KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRANPI--AGRISMS 400

Query: 583 NLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI               S   +   CNLGS+N+ +       D      TI T++R
Sbjct: 401 NLCSEILQVSEASEFNDDLSYSHMGKDISCNLGSLNIASA-----MDSADFGKTIETSIR 455

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ +  ++   +K N    AIGLG M     L    I Y S E ++  +     
Sbjct: 456 ALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYT 515

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELAMNRTS- 742
           +++HAI AS  LA ER  ++  F+ S +  G +       + +    +VRD       S 
Sbjct: 516 VTYHAIRASNRLATERGQSFKGFENSKYASGDYFDKYTDREWLPATEKVRDLFEKAGISI 575

Query: 743 --RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799
             +  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G  
Sbjct: 576 PTQEDWKALKQAVMETGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRV 635

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
               S+L N+                                 + +  A+EI P  +I++
Sbjct: 636 YYPASYLSND-------------------------------NLEYYQDAYEIGPEKIIDT 664

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 665 YAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 710


>gi|300776392|ref|ZP_07086250.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
 gi|300501902|gb|EFK33042.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
          Length = 552

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 170/633 (26%), Positives = 258/633 (40%), Gaps = 120/633 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348
                 Q+L   Y L       E       R+    A  L   E +       F  +++ 
Sbjct: 11  LNEESEQMLNRGYLLKG-----ETVDGAIDRITTAAAKRLYKPELQP-----AFKEMITK 60

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                S+P   N GT+     SCF   +PD + GI   + E  M  K  GG    +  +R
Sbjct: 61  GWISFSSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELR 120

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++  
Sbjct: 121 NRGTAVTD-NGKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLSIK-- 177

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D      ++ T   +PD +M+ +                                   
Sbjct: 178 --DIGSPIQNLFTGVCVPDYWMQDMIDGD------------------------------- 204

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585
                      +    +W ++L    + G P+I F D  N   PQ +      V++SNLC
Sbjct: 205 -----------MEKRKVWARVLESRQQKGLPYIFFTDNVNRNKPQVYKDLGMTVNASNLC 253

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           +EI L S+ EE+ +C L S+NL        +D  K    ++ A+  LD V+       E 
Sbjct: 254 SEIMLPSTMEESFICCLSSMNLE------LYDEWKDTDAVKLAIYFLDAVLSEFIDKTEG 307

Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                        HRA+GLG++G+ S L    IP+ S EA +    +   I   A  AS 
Sbjct: 308 NYYLQGARNFAMRHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFRHIKEQAEQASR 367

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA   G     KG                                           G+R
Sbjct: 368 ELANIYGEPEVLKG------------------------------------------YGLR 385

Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+  MAIAPT + + I G  S  I+P   N Y      G+F   N +L   L+++ L +E
Sbjct: 386 NTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLAKLLEEKGLDNE 445

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                +  + GS+ ++  +  + K +  T  EI PM +I  A++RQ++IDQAQSLNL + 
Sbjct: 446 ETWRTIMLNHGSVQHLNELTPEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQIP 505

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                K ++++Y +AW  G+KT YY RS S + 
Sbjct: 506 STMPVKDVNYLYIEAWKKGVKTLYYQRSSSVSK 538


>gi|326335595|ref|ZP_08201782.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692361|gb|EGD34313.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 551

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 167/633 (26%), Positives = 260/633 (41%), Gaps = 120/633 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348
                 QIL   Y L       E  +    R+    A  L   E +       F  +++ 
Sbjct: 10  LNEESEQILNRGYLLKG-----ESVEGAIDRITYAAAKRLFKPELQP-----AFKEMITK 59

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                S+P   N GT      SCF   +PD + GI   L E  M  K  GG    +  +R
Sbjct: 60  GWISFSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELR 119

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ +   NGKS G + F+K+ +     V+QGG R+GA  AYL+  H D+EEFL ++  
Sbjct: 120 HRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDIEEFLQIK-- 176

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D      ++     +PD +++ +                                   
Sbjct: 177 --DTGYHIQNLFFGVCVPDYWIQEMIDGD------------------------------- 203

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585
                      +    LW ++L    + G P+I F D  N + PQ +      +HSSNLC
Sbjct: 204 -----------VDKRKLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNNMFIHSSNLC 252

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           +EI L SS+EE+ +C L S+NL        FD  K    ++ A+  LD V+       + 
Sbjct: 253 SEIMLPSSAEESFICCLSSMNLE------LFDEWKDTKAVKLAIFFLDAVLSEFIEKTKD 306

Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                        HRA+GLG++G+ S L    IP+ S EA +    +   I   A  A+ 
Sbjct: 307 NYYLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFMHIQNEAEKATQ 366

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA   G     KG                                           G R
Sbjct: 367 ELAHIYGEPELLKG------------------------------------------YGRR 384

Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+  MA+APT + + I G VS  I+P   N Y      G+F   N +L   L+++ + +E
Sbjct: 385 NATTMAVAPTTSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNRYLTQLLEEKGINNE 444

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            +   ++  DGS+ ++  +    K +  T  EI PM ++  A++RQ++IDQ+QSLNL + 
Sbjct: 445 DVWRSIRLSDGSVQHLSELTTHEKNVFKTFKEISPMEIVTQAAQRQQYIDQSQSLNLNIP 504

Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                + ++ +  +AW +G+K+ YY RS+S   
Sbjct: 505 PTMPVRDVNKVILEAWKLGVKSLYYQRSQSVAK 537


>gi|320533558|ref|ZP_08034211.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320134228|gb|EFW26523.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 718

 Score =  321 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 181/750 (24%), Positives = 304/750 (40%), Gaps = 87/750 (11%)

Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +S  DL+   + +   L + +     +  +  AR    +   +     +   +K  + 
Sbjct: 11  ETVSSPDLDYHALNAKLNLYDADGRIQFDADREAARQYFLQHVNQNTVFFHDLEEKLEY- 69

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                        +EEG     + +      +          +     +LG    Y  Y 
Sbjct: 70  ------------LVEEGYYEGHILDKYSPEFVKTAFKAAYAHKFRFETFLGAFKYYTSYT 117

Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   +G R  E  +     VA+ LA      E+  ++  + + S  F  +TPT  N G  
Sbjct: 118 LKTFDGKRYLERFEDRVTMVALTLA---DGDEQLTLDLVDEMMSGRFQPATPTFLNEGKA 174

Query: 365 HP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +  SCFL  + D++  I   +     L+K  GG+    + +R +GA I     +S G
Sbjct: 175 QRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSG 234

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 235 VIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKIS 541
            IPD+  +    N    LFSP    D+  +YG  F      E Y    D G IK  +KI+
Sbjct: 295 VIPDITFELARNNEDMYLFSP---YDVERVYGMPFADINVTEKYREMVDDGRIKK-KKIN 350

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLN 591
           A   ++ +  + FE+G+P++ F+D  N  +P             +  V   +   E    
Sbjct: 351 ARTFFQTLAEIQFESGYPYVMFEDTVNRANPIKGKVVMSNLCSEILQVSEPSELNEDLTF 410

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650
           +   +   CNLGS+N+         D    A TIRTAVR L  V D  +  ++    + N
Sbjct: 411 AHVGKDISCNLGSLNIAKT-----MDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGN 465

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
           H   AIGLG M     L    I Y S E ++  +     + F A++AS E+A ER  ++ 
Sbjct: 466 HESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFV 525

Query: 710 SFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G F    +          + E+    +++  +R  W EL ++VK  G+ N 
Sbjct: 526 GFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAEKVKKGGLYNR 585

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
           N  A+ PT +I+ I   + SI P    + ++     G       F+ N+           
Sbjct: 586 NLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND----------- 634

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                   +  A+EI P  +I++ +   + +DQ  SL L+  + 
Sbjct: 635 --------------------NLDYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDT 674

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            + + ++     AW  G+KT YY+R R A 
Sbjct: 675 ATTRDVNRAQIYAWRKGIKTLYYIRLRQAA 704


>gi|257092627|ref|YP_003166268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045151|gb|ACV34339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 969

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 141/628 (22%), Positives = 244/628 (38%), Gaps = 73/628 (11%)

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD-------LYGI 383
           E ++ +    F        F+ +      +GT     L +CF+  + D          GI
Sbjct: 61  EKQRGQWEARFL-WAQENGFVPAGRINSAAGTTLAATLINCFVQPIGDSVVEIVDGKPGI 119

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
           + AL E A   +  GG+G D++ +R +GA + GT  ++ G + +++V + +   V   G 
Sbjct: 120 YSALAEAAETMRRGGGVGYDFSAIRPMGAIVKGTQSRASGPVSYMRVFDRSCETVESAGS 179

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA    L   H D+E F+  +     D     + N +  + D FM+ V  +       
Sbjct: 180 RRGAQMGVLRCDHPDIEVFIHAK-----DHGDLTNFNVSIAVTDAFMEAVEAD------- 227

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
             EV   H             ++R      I V+R++ A  LW +++   ++   P I F
Sbjct: 228 -AEVELTHRAEPNADMKRASAFQRD---DGIWVYRRVRARDLWDQVMKSTYDHAEPGILF 283

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDY 618
            D  N  +   +  V+ ++N C E  L         C LGSINL     +       FD+
Sbjct: 284 LDRMNKDNNLYYCEVIEATNPCAEQPLPPY----GCCCLGSINLTLFVKDAFSARAEFDF 339

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
                 I+ + R+LDNV+D+    +++ ++     R +GLG  G    L +L + Y  PE
Sbjct: 340 AAFGEVIKVSTRMLDNVLDVTAWPLDRQREEAANKRRVGLGFTGLGDTLCMLCLRYDRPE 399

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
           A  +     EF+   A  ASV+LA+ERGA+  F   L+  G                   
Sbjct: 400 ATAMGARISEFMRDTAYLASVDLAKERGAFPLFNAELYLSGGNF---------------- 443

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMS 796
              +     E+K  ++  G+RNS+ ++IAPT TI+       S  I+P +   Y +    
Sbjct: 444 ---ASRLPTEIKAEIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPFSWTYSRKKRM 500

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            D T+   + V +               K+  G +       + L     TA EI     
Sbjct: 501 ADGTLK-EYAVEDYA---------WRLYKHQGGDV-------EKLPDYFVTALEISAKAH 543

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +  +    +ID + S  + +  +   +    +Y  AW  GLK     R  +      S 
Sbjct: 544 KDMVAAVAPYIDTSISKTVNVPADYPYEDFQDLYLSAWKAGLKGLATYRPNAVLGSVLSV 603

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                 +  +    +         +  +
Sbjct: 604 GSPSGSQSVSQKQAEDRKQPQDFELGDA 631


>gi|268315916|ref|YP_003289635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
 gi|262333450|gb|ACY47247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodothermus marinus DSM 4252]
          Length = 620

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 146/597 (24%), Positives = 249/597 (41%), Gaps = 56/597 (9%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV-PDDLYGIFGALQ 388
            E+E+ + A  FY +L  F F+     L  +GTRH   L +CF+  +  D L GIF +L+
Sbjct: 55  PESERARWAERFYQVLYGFKFLPGGRILAGAGTRHRVTLFNCFVMGIIEDSLDGIFDSLK 114

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E A+  +  GG+G D++ +R  G     T   + G + F+ + +     +   G R+GA+
Sbjct: 115 EGALTMQQGGGVGYDFSTLRPAGTRARTTGTIASGPVSFMHIWDAMCATLLSTGARRGAM 174

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            A L   H D+E F+  +   G         N +  + D FM+ V ++A W L  P    
Sbjct: 175 MATLRCDHPDIETFVTAKHRPG----VLTHFNLSVQVFDEFMEAVRRDADWPLVFPAAAL 230

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +   +      I Y  +         +V R + A ALW ++L   ++   P + F D  N
Sbjct: 231 EDEGMGDGP--IVYRRWTGTDGPVPCRVLRVVKARALWEQILRATYDYAEPGVLFIDTIN 288

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDKLAS 623
             +   +   + ++N C E  L         C+LGSINL              D++ +  
Sbjct: 289 RMNNLAYREHITATNPCGEQPLPPY----GACDLGSINLTRFVRAPFTPEADLDWEGIRE 344

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           T+  AVR+LDNVID++   +    +     R IGLG+ G   AL +L + YAS EA ++A
Sbjct: 345 TVAVAVRMLDNVIDVSGFPLPAQAEQARGTRRIGLGITGLADALIMLGLHYASEEARQLA 404

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              M+ I   A   S+ LA+E+G +  F+   +                      +   +
Sbjct: 405 ARVMQTICHTAYRTSIALAREKGVFPFFERERY--------------------LESPFIQ 444

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802
              ++++K + T G+RNS+ ++IAPT TI+ +    S  I+P +   Y +  +  D    
Sbjct: 445 ALPEDIRKGIATYGIRNSHLLSIAPTGTISLLANNVSSGIEPVFAYRYTRYILGLDGERR 504

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
              L +      LW                 +    + L +    A  +DP   ++  + 
Sbjct: 505 AYTLTD--YALRLW---------------QRLHGDSEMLPEAFVDAQHLDPYDHLKMQAA 547

Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            Q ++D A S  + +  +        +Y  A+  GLK     R           +  
Sbjct: 548 LQPYVDGAISKTVNVPADTPFNAFRQLYDWAYDHGLKGCTTYRPSPVRGAVLEAITA 604


>gi|291006953|ref|ZP_06564926.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 943

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 131/653 (20%), Positives = 234/653 (35%), Gaps = 66/653 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           V  G    E + E    E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  
Sbjct: 109 VEHGYFATEADAEIFEHELTWMLMHQVFSFNSPVWFNVGTSSRQQVSACFILSVDDTMES 168

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I    +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G 
Sbjct: 169 ILNWYKEEGLIFKGGSGAGLNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGG 227

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTA 482
             R+ A    L+  H D+EEF++ +       R                   +  + N +
Sbjct: 228 ATRRAAKMVVLDVDHPDIEEFIETKAKEEHKIRALRDAGFDMDLGGADSASVQYQNANNS 287

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  + L S                           R +  V   + A
Sbjct: 288 VRVSDEFMRAVESDGKFGLRS---------------------------RTDGSVIESVGA 320

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             L+RK+    +E   P I + D  N        G + +SN C+E        + + CNL
Sbjct: 321 RELFRKVAKAAWECADPGIQYDDTINDWHTSPETGRISASNPCSEYMH----LDNSSCNL 376

Query: 603 GSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+NL+     +  FD +    T+   +  +D  I       E    +    R +G+G  
Sbjct: 377 ASLNLMKFLREDLTFDAELFEKTVEFVITAMDISISFADFPTEAIGDTTRKFRQLGIGYA 436

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
              + L      Y S     +A      ++  A   S ELA   G Y  +  +       
Sbjct: 437 NLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKRSAELAGAVGPYEGYARNADAHQRV 496

Query: 722 PIDSIGLLA----EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                          ++++A+++ +   W E  +     G RN+    +APT TI  +  
Sbjct: 497 MRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIGARDGWRNAQASVLAPTGTIGLMMD 556

Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833
             +  I+P    + + K    G   +VN  +   LK      E + + ++Y    G + +
Sbjct: 557 CDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKALGYQQEQIEAVVEYIAEHGHVVD 616

Query: 834 IERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
              +  +  ++   A     I PM  +   +  Q ++  A S  + + E  S   ++ IY
Sbjct: 617 APGLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPFLSGAISKTVNMPESASVADVEEIY 676

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            + W +GLK     R         S  KG  G+                 +P 
Sbjct: 677 FEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGESEKAVEKQIEYRPVRKRLPK 729


>gi|134098345|ref|YP_001104006.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910968|emb|CAM01081.1| ribonucleoside diphosphate reductase,B12-dependent
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 922

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 131/653 (20%), Positives = 234/653 (35%), Gaps = 66/653 (10%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           V  G    E + E    E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  
Sbjct: 88  VEHGYFATEADAEIFEHELTWMLMHQVFSFNSPVWFNVGTSSRQQVSACFILSVDDTMES 147

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I    +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G 
Sbjct: 148 ILNWYKEEGLIFKGGSGAGLNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGG 206

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTA 482
             R+ A    L+  H D+EEF++ +       R                   +  + N +
Sbjct: 207 ATRRAAKMVVLDVDHPDIEEFIETKAKEEHKIRALRDAGFDMDLGGADSASVQYQNANNS 266

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +  + L S                           R +  V   + A
Sbjct: 267 VRVSDEFMRAVESDGKFGLRS---------------------------RTDGSVIESVGA 299

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             L+RK+    +E   P I + D  N        G + +SN C+E        + + CNL
Sbjct: 300 RELFRKVAKAAWECADPGIQYDDTINDWHTSPETGRISASNPCSEYMH----LDNSSCNL 355

Query: 603 GSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+NL+     +  FD +    T+   +  +D  I       E    +    R +G+G  
Sbjct: 356 ASLNLMKFLREDLTFDAELFEKTVEFVITAMDISISFADFPTEAIGDTTRKFRQLGIGYA 415

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
              + L      Y S     +A      ++  A   S ELA   G Y  +  +       
Sbjct: 416 NLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKRSAELAGAVGPYEGYARNADAHQRV 475

Query: 722 PIDSIGLLA----EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                          ++++A+++ +   W E  +     G RN+    +APT TI  +  
Sbjct: 476 MRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIGARDGWRNAQASVLAPTGTIGLMMD 535

Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833
             +  I+P    + + K    G   +VN  +   LK      E + + ++Y    G + +
Sbjct: 536 CDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKALGYQQEQIEAVVEYIAEHGHVVD 595

Query: 834 IERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
              +  +  ++   A     I PM  +   +  Q ++  A S  + + E  S   ++ IY
Sbjct: 596 APGLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPFLSGAISKTVNMPESASVADVEEIY 655

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            + W +GLK     R         S  KG  G+                 +P 
Sbjct: 656 FEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGESEKAVEKQIEYRPVRKRLPK 708


>gi|227504015|ref|ZP_03934064.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199409|gb|EEI79457.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 720

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 174/734 (23%), Positives = 291/734 (39%), Gaps = 72/734 (9%)

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH-----EMQCLYPEYFCR 258
            +    ++ E          LL            K  + A            +Y      
Sbjct: 7   KTVAEPVKPEEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDLEE 66

Query: 259 YIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSR 313
            +   V+ +     +   +D  ++ +  K    + F +      Y  Y        +G R
Sbjct: 67  KMRYLVENKYYEPELLEQYDFDFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRR 126

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +    RV+M            A    + + +  F  +TPT  N+G     +L SC
Sbjct: 127 YLERFED---RVSMTALFLADGDTTVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSC 183

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 184 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLL 243

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 244 EDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFE 303

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
              +N    LFSP    D+  +YGK F      E+YE   +   I+  +KI+A   ++ +
Sbjct: 304 LAKKNDDMYLFSP---YDVERVYGKAFADISITEHYEEMVEDPRIRK-KKINARHFFQTV 359

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602
             + FE+G+P+I F+D  N ++     G ++ SNLC+EI   +S    A           
Sbjct: 360 AELQFESGYPYIMFEDTVN-KANPVKTGWINMSNLCSEILQVNSPSVFADDLSYETMGSD 418

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +       D      T+ TA+R L  V D    +++   +K N    AIGLG M
Sbjct: 419 ISCNLGSLNIAMTMDSPDFGLTVETAIRGLTAVADKTAINSVPSVRKGNDDSHAIGLGQM 478

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGV 720
                L   HI Y S E ++  +     I + A+ AS ++A+ERG Y S F  S +  G 
Sbjct: 479 NLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKIARERGEYFSEFPQSEYASGE 538

Query: 721 FPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           F         + R        D  +++  +   W  LK  V   G+ N N  A+ PT +I
Sbjct: 539 FFDRYDPEEFKPRTARVQELFDASSIHTPTAEDWAALKADVAKHGLYNRNLQAVPPTGSI 598

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G        + N+                      
Sbjct: 599 SYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------------- 636

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
                      +    ++EI    +I++ +   K++DQ  SL L+  +  + + ++    
Sbjct: 637 ---------NLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINKAQI 687

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 688 YAWRKGIKTLYYIR 701


>gi|66957898|gb|AAQ73541.2| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 796

 Score =  320 bits (820), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 170/717 (23%), Positives = 282/717 (39%), Gaps = 76/717 (10%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
           Y E      +   +       ++ + L    + L Y +      +      D Y      
Sbjct: 84  YLEAIDLCDDVREEVTHHMARIVKY-LTNFYSGLAYYKIKTLGLMSAMKYEDFYLTKFQN 142

Query: 312 SRIEMPQAFFMRVAMGLALKETEKE---------------KRAVEFYNLLSSFHFMCSTP 356
              E    FF R+A  +A                           F+NLLS    +  TP
Sbjct: 143 GTHESIGQFFTRIAATVATHIHRDMPQYGLLIPMMERSWFNYFDYFFNLLSHNIIIPPTP 202

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +   G ++  L+SC+L   P       +    Q+   +  + GG+G +           
Sbjct: 203 AMLFMGRKNRSLASCYLLDPPQKTTLEAMSAVAQDIIPILNHRGGIGINVNDYNQT---- 258

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR- 473
               G+  G +   K+ +   +  N   +R   VC ++E W+ DVE FL ++  T  +  
Sbjct: 259 -PREGRKLGFLGLAKLIDTCVLLSNSDSERPTGVCMFMEPWNADVESFLGIKGLTTLEHH 317

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE-VSDLHDLYGKEFEIAYENYERQADRG 532
            R  ++  A WIPDLFMKR   +   T    D+  + L  LYGKEFE  Y   E      
Sbjct: 318 LRCDNIFNALWIPDLFMKRYMADPNTTWSLFDDRCNHLAKLYGKEFEDEYHRLETAGMA- 376

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591
                R++    L  K++     TG P+I FKD CN        G  +  SNLCTEI  +
Sbjct: 377 ----VRQMPIKELLFKIIRSAIMTGSPFIMFKDSCNRHYYMDTQGQAIRGSNLCTEIIHH 432

Query: 592 SSSEETAVCNLGSINLLAHFA---------------------------NNQFDYDKLAST 624
           +  +   VCNL ++NL A                              +  F+++KL   
Sbjct: 433 TEPDSDGVCNLMNVNLPAFLTLSFNKETYCLSDDTLWQEHNKFCTPGGHRYFNFEKLTEA 492

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +  A   ++ +ID + H   K +      R++G+G  G  +   +L     +P+A ++  
Sbjct: 493 VTAATIFINVMIDRSVHPTTKTQNGAKNFRSMGIGFQGLNTLCWILGETLVTPKARKLGK 552

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
              E +   A  AS EL Q     +  F  S + +G+   D+   +  +        T +
Sbjct: 553 TICEAMYLSAAEASNELCQLGLSPFKRFSESRYARGIMHFDAWDNVGSL--------TFQ 604

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+    N
Sbjct: 605 DRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKPN 664

Query: 804 SFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIP-DDLKKIHATAFEIDPMWLIES 859
             L+ +L    +       +  L+ H   +      +P D   + + TAFE D   L+E 
Sbjct: 665 VMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDHAIRKYLTAFEYDQNTLLEL 724

Query: 860 ASRRQKWIDQAQSLNLYL----DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
            + R  ++D +QS  LY        S K +      A+ +GLKT  YY R + AT  
Sbjct: 725 TADRAPFVDHSQSNTLYFLEGKTPISAKYIMNHLVTAYKLGLKTGMYYCRIKKATDA 781


>gi|218296963|ref|ZP_03497649.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus
           aquaticus Y51MC23]
 gi|218242666|gb|EED09202.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus
           aquaticus Y51MC23]
          Length = 560

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 163/585 (27%), Positives = 246/585 (42%), Gaps = 103/585 (17%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
            + +F   ++  ++  +TP   N G +     SC+ T V DD   I  A+ E  M++K  
Sbjct: 54  FSEKFQRYMARGYYSLATPVWANYGLKRGLPISCYGTYVEDDTASILRAVAEVGMMSKQG 113

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG       +R  GA I   NG+S G   F  + +      NQG  R+G   AYL+  H 
Sbjct: 114 GGTSVYLGALRPRGAPIRD-NGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYLDVEHP 172

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EE+  +++    +      +     IPD +M+ +                        
Sbjct: 173 DLEEWFRIQR----EGSEIQSLFWGVSIPDRWMEEMVAGDRAK----------------- 211

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                                       W K+L   FE G P++ F+D  N   PQ    
Sbjct: 212 -------------------------RETWAKILKSRFEAGIPYLFFRDAANRGMPQVFRE 246

Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               + +SNLCTEI L SS EE+ VC L S+NLL       +D  K    + T V  LD+
Sbjct: 247 LGLRIWASNLCTEIMLPSSPEESFVCCLSSLNLL------HYDEWKETDAVETLVIFLDS 300

Query: 635 VIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V+D           +E+A +    +RAIGLG++G+ S L    IP  S EA  +  E  +
Sbjct: 301 VLDDFIEKAEGIPYLERAVRFARRYRAIGLGVLGWHSYLQSRMIPLESLEAQYLNQEIFK 360

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I   A  AS  L +                                       R P DE
Sbjct: 361 TIRERAEEASRWLRK---------------------------------------RHPEDE 381

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           L    +    RN+  +AIAPT + + I G VS SI+P   N Y+K          N FL 
Sbjct: 382 LSGVGELKERRNATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKAKVPFKNPFLE 441

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             L+Q+   +E +   +  H+GS+ +++ + D+ K +  T  EI  + L+  A+ RQ+++
Sbjct: 442 ELLRQKGKDEERVWRSILEHNGSVQHLDFLNDEEKAVFKTFAEISQLELVRQAAARQRYV 501

Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           DQ QSLNL +  E   K ++ +Y +AW  GLK+ YY  S+S    
Sbjct: 502 DQGQSLNLVIHPEAPLKDVNELYLEAWRSGLKSLYYQWSQSVAQA 546


>gi|322511018|gb|ADX06331.1| putative ribonucleotide reductase large subunit A [Organic Lake
           phycodnavirus 2]
          Length = 831

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 154/482 (31%), Positives = 251/482 (52%), Gaps = 29/482 (6%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIF 204
            ++  +      +  ++    ++       ++    ++ +    +Y+ +   +++  +  
Sbjct: 3   YVIKRNERKELLSYDKILERTKKLGDKYNLEIQYSGLVLKIIDQLYNNIKTCEIDELMAE 62

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
              ++     +Y+K+     +    +E   T+ +  Q  +   +   Y            
Sbjct: 63  QCASMGSIHYDYSKLAGYICVSNHHKETKHTLLESVQLLSKKYLSTRY------------ 110

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
                  S+++     L + + YER+F  +Y G + L   Y +  N   +E  Q  +MRV
Sbjct: 111 ------YSIVEKHHKELEHMIVYERNFLIDYFGYKTLERSYLMRNNNKVVENIQHLWMRV 164

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383
           ++ +     E   +  E Y+ LS   F+ +TPTL+NSGTR PQLSSC+L  + DD + GI
Sbjct: 165 SIEIHG---ENLDKVKETYDGLSKKLFIHATPTLYNSGTRRPQLSSCYLLGMEDDSIDGI 221

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442
           F  L E A ++K++GG+G     VR  G HI GTNGKS G++P L+V N+TA  V+QGG 
Sbjct: 222 FNTLHECASISKWAGGIGLHIHNVRSKGTHISGTNGKSNGIVPMLRVFNNTARYVDQGGG 281

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           KR G+   YLE WH D+EEFL+LRKN G++  R  D+  A W+PDLFM ++ ++  W L 
Sbjct: 282 KRNGSFAIYLEPWHGDIEEFLELRKNHGEEEMRARDLFYALWVPDLFMNKIEKDDDWYLM 341

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P++   L +LYG+ FE  Y  Y       E K  +K+ A  LW K+L    ETG P++ 
Sbjct: 342 CPNQCEGLSELYGESFEALYNQYV-----SEGKYLKKMKARELWFKILDSQMETGTPYML 396

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD CN +S Q+++G + SSNLC EI   S  EE+AVCNL SI+L +    +++ +    
Sbjct: 397 YKDACNKKSNQKNLGTIRSSNLCCEIIEYSDKEESAVCNLASISLSSFVKPSKYKFKGNV 456

Query: 623 ST 624
           + 
Sbjct: 457 NV 458



 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 172/342 (50%), Gaps = 37/342 (10%)

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FDY  L    +     L+N+ID+N +  EK + SN  HR IG+G+ G      ++++ 
Sbjct: 523 PWFDYKGLHKITKIVTENLNNIIDVNYYPTEKTRLSNKKHRPIGIGVQGLADTFAMMNVA 582

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEV 732
           + S +A +I  +  E +   ++  S+ELA+E+   Y SF GS   QG+F  D   +    
Sbjct: 583 FDSNDAKQINKDIFETMYHASMEKSMELAKEKQGPYDSFDGSPLSQGIFQFDLWNVTP-- 640

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                   +++  WD+L+  +   G  NS C+A  PTA+ + I   ++  +P   N+Y +
Sbjct: 641 --------SNKYNWDKLRNNIMEFGTYNSLCLAPMPTASTSQILSNNECFEPFTSNMYTR 692

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             ++G+F V+N  L+ EL   ++W+ ++ +++  H GSI  I+ IPD +K+ +   +E+ 
Sbjct: 693 RTLAGEFMVINKHLMKELIDLNIWNSSIKNEIVKHKGSIQTIKEIPDYIKQKYKIVWEMS 752

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911
              +I+ A  R  +I Q+QS+NL++++P+ K L  ++  AW  GLKT  YYLR ++    
Sbjct: 753 MKSIIDMAKDRGAYICQSQSMNLWVEDPNYKILTNMHLYAWKSGLKTGMYYLRRKAKHQA 812

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           ++ T+                              D EC +C
Sbjct: 813 QQFTVVPDK-------------------------EDPECLMC 829


>gi|295395247|ref|ZP_06805455.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972009|gb|EFG47876.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 720

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 174/735 (23%), Positives = 304/735 (41%), Gaps = 75/735 (10%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV--YKKPQKATHHEMQCLY 252
           E+DL+   + +   L ++         R   E+ R+        +        H++    
Sbjct: 17  ETDLDYHALNAMLNLYDEN-------GRIQFERDRQAARQFFLQHVNNNTVFFHDLA--- 66

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +E     + + +      +  L+     ++     +LG    Y  Y L   +G
Sbjct: 67  -EKLNYLVEHEYYEKEVLDQYDFEFISELSKFAYSKKFRFQTFLGAFKFYTSYTLKTFDG 125

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  + E    A      + +  F  +TPT  N+G +   +L 
Sbjct: 126 KRYLERFEDRVVMVALFLARGDRE---LARNLVEEIIAGRFQPATPTFLNAGKKQRGELV 182

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 183 SCFLLRIEDNMESIGRSINSALQLSKRGGGVAFSLTNIRESGAPIKKIENQSSGVIPVMK 242

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 243 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 302

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 303 FQLAKKNEDMYLFSP---YDVEQVYGVPFSDISVTEKYDEMVDDARIRKTKIRAREFFQT 359

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCN 601
           +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI         N+      V  
Sbjct: 360 LAEIQFESGYPYIMYEDTVNRANPI--DGKITMSNLCSEILQVSEASEYNADLTYAHVGK 417

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D D    T+ TA+R L  V D  N  ++   ++ N+   AIGLG 
Sbjct: 418 DISCNLGSLNIAMAMDSDDFGRTVETAIRGLTAVSDTSNISSVPSIERGNNMSHAIGLGQ 477

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y S E ++  +     +++HA+ AS+E+A+ERG A+  F+ S +  G
Sbjct: 478 MNLHGYLARESIHYGSEEGLDFTNMYFYTVAYHAVRASMEIAKERGVAFEGFERSKYASG 537

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +           R        ++  ++  ++  W  L+  V T G+ N N  A+ PT +
Sbjct: 538 EYFEKYTQQEWVPRTQKVADLFEKAGVHIPTQDDWAALRDDVATYGIYNQNLQAVPPTGS 597

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       F+ N+                     
Sbjct: 598 ISYINNSTASIHPIASRIEIRKEGKIGRVYYPAPFMTND--------------------- 636

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                       + +  A+E+    +I++ +   K +DQ  SL L+  +  + + ++   
Sbjct: 637 ----------NLEYYQDAYEVGYEKVIDTYAEATKHVDQGLSLTLFFKDTATTRDVNRAQ 686

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 687 IYAWRKGIKTLYYIR 701


>gi|227833935|ref|YP_002835642.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454951|gb|ACP33704.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 720

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 183/734 (24%), Positives = 297/734 (40%), Gaps = 72/734 (9%)

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +    ++ E          LL            K  + A    +Q +       +  E 
Sbjct: 7   KTVAEPVKPEEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDLEE 66

Query: 264 VKARLLHESMMD------FDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSR 313
               L+     +      +D  ++ +  K    F F +      Y  Y        +G R
Sbjct: 67  KMRYLVDNKYYEPELLEQYDFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRR 126

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +    RV+M          K A    + + +  F  +TPT  N+G     +L SC
Sbjct: 127 YLERFED---RVSMTALFLADGDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSC 183

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 184 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLL 243

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 244 EDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFE 303

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
               N    LFSP    D+  +YGK F      E+YE   +   I+  +KI+A   ++ +
Sbjct: 304 LAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTV 359

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602
             + FE+G+P+I F+D  N R+     G ++ SNLC+EI   +S  E             
Sbjct: 360 AELQFESGYPYIMFEDTVN-RANPVKTGRINMSNLCSEILQVNSPSELNEDLTYKTLGSD 418

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +       D    A T+ TA+R L  V D    +++   +K N    AIGLG M
Sbjct: 419 ISCNLGSLNIAATMDSPDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQM 478

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGV 720
                L   HI Y S E ++  +     I + A+ AS +LA+ERG Y S F  S +  G 
Sbjct: 479 NLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGE 538

Query: 721 F-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           F     P D      +V++  A   ++  S   W +LK  V   G+ N N  A+ PT +I
Sbjct: 539 FFDRYDPADFAPRTEKVKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSI 598

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G        + N+                      
Sbjct: 599 SYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------------- 636

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
                      +    ++EI    +I++ +   K++DQ  SL L+  +  + + ++    
Sbjct: 637 ---------NLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQI 687

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 688 YAWRKGIKTLYYIR 701


>gi|297626482|ref|YP_003688245.1| Vitamin B12-dependent ribonucleotide reductase
           (ribonucleoside-diphosphate reductase NrdJ)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922247|emb|CBL56819.1| Vitamin B12-dependent ribonucleotide reductase
           (Ribonucleoside-diphosphate reductase NrdJ)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 963

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 129/631 (20%), Positives = 232/631 (36%), Gaps = 31/631 (4%)

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383
           A G      + E    E   +L   +F  ++P  FN GT    Q+S+CF+ +V D +  I
Sbjct: 108 AEGYFASPEDAEVFEQELTWMLVHQYFSFNSPVWFNVGTASPQQVSACFILSVDDSMESI 167

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
               +E  M+ K   G G + + +R     +  + G + G + F++ A+ +A  +  G  
Sbjct: 168 LNWYKEEGMIFKGGSGAGLNLSRIRSSKELLRSSGGTASGPVSFMRGADASAGTIKSGGA 227

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+ A    L+  H D+EEF++ +    D  R   D      +    +  V         
Sbjct: 228 TRRAAKMVVLDVDHPDIEEFVETKAREEDKIRALRDAGFDMDLGGRDITSVQYQNANNSV 287

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
              +        G  F            R   +V  ++ A  LW K+    +E   P + 
Sbjct: 288 RVSDEFMQAVQDGTPF--------GLKARTTGEVIEEVDAKDLWGKIAKAAWECADPGMQ 339

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKL 621
           +    N        G +++SN C+E      S + + CNL S+NLL    ++  FD +  
Sbjct: 340 YDGTINSWHTTPESGRINASNPCSEYM----SLDNSSCNLASLNLLKFLRDDDSFDTELF 395

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I       E    +   +R +G+G     + L  L   Y S     
Sbjct: 396 TKAVELIITAMDISICFADFPTEAIGDTTRDYRQLGIGYANLGALLMALGKGYDSEGGRA 455

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELA 737
           +A      ++  A   S E+A   G Y  +  +                 L      +  
Sbjct: 456 LAAAITSLMTGTAYRRSAEMAGVVGPYKGYARNAESHQRVIRKHGAANEALDNVAAIDTE 515

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNM 795
           + R ++  WD+     +  G RN+    +APT TI  +    +  I+P +  + + K   
Sbjct: 516 VRRAAQHEWDKADVMGQANGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVG 575

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF--- 849
            G   +VN  +   L     +D      +  +    G++     + +   ++  TA    
Sbjct: 576 GGSMQMVNHTVERALTNLG-YDATTRQSIVDYVAEKGNVVGAPGLREADYEVFDTAMGVR 634

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I PM  +   +  Q ++  A S  + L E  + +++  +Y Q W +GLK     R    
Sbjct: 635 AIAPMGHVRMMAAVQPFLSGAISKTVNLPESATVEEIADVYMQGWKLGLKALAVYRDNCK 694

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
                S+  G  GK +    TD       + 
Sbjct: 695 VGQPLSS--GNQGKDDNKSTTDQAKPEVRVE 723


>gi|271968371|ref|YP_003342567.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270511546|gb|ACZ89824.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 945

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 137/660 (20%), Positives = 244/660 (36%), Gaps = 38/660 (5%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            L+ L DR       + +E           G    E + E    E  + L +  F  ++P
Sbjct: 92  SLKQLIDRVVGVYTRTAVE----------HGYFAGEEDAEIFDHELKHALVNQVFSFNSP 141

Query: 357 TLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             FN GT    Q+S+CF+  V D +  I    +E  ++ K   G G + + +R     + 
Sbjct: 142 VWFNVGTASPQQVSACFILAVDDQMESILDWYKEEGVIFKGGSGSGVNLSRIRSSKELLS 201

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
              G + G + F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +    D  R
Sbjct: 202 S-GGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIETKAREEDKVR 260

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
              D      +                 + +    + D + +  E   E   R    GE 
Sbjct: 261 ALRDAGFDMDL------GGKDIVSVQYQNANNSVRVSDEFMRAVEKGEEFGLRARLTGE- 313

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V  K+ A  L+RKM T  +E   P + + D  N        G + +SN C+E       
Sbjct: 314 -VIEKVDAGRLFRKMATAAWECADPGVQYDDTINDWHTSPETGRITASNPCSEYLH---- 368

Query: 595 EETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            + + CNL SINL+    ++  FD +         +  +D  I       EK  ++   +
Sbjct: 369 LDNSSCNLASINLMKFLKDDNSFDIESFVKITELIITAMDVSITFADFPTEKIDQTTRAY 428

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G     + L      Y S     IA      ++  +   S ELA   G Y  +  
Sbjct: 429 RQLGIGYANLGALLMATGHAYDSEGGRAIAGAVTSLMTGASYRRSAELAAVVGPYDGYAR 488

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +                ++R    M++     +   W E  K  +  G RN+    +APT
Sbjct: 489 NADAHKRVMRKHAAANDDLRTLEGMDKAIHAEASRQWTECLKLGERNGYRNAQASLLAPT 548

Query: 770 ATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY- 826
            TI  +    +  I+P    + + K    G   +VN  +   L+Q    +E + + ++Y 
Sbjct: 549 GTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTIPRALRQLGYPEEQVEAIVEYI 608

Query: 827 -HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
             +  + +   +  +  ++   A     I PM  +   +  Q ++  A S  + L E  +
Sbjct: 609 ASNSHVVDAPGLKPEHYEVFDCAMGERAIAPMGHVRMMAAAQPFLSGAISKTVNLPEAAT 668

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            + ++ +Y + W +GLK     R         S       K       +P      +  P
Sbjct: 669 VEDIEQVYMEGWKLGLKALAVYRDNCKVGQPLSVAGKKSDKKTEEKAAEPEIQVVEISRP 728


>gi|311113721|ref|YP_003984943.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia
           dentocariosa ATCC 17931]
 gi|310945215|gb|ADP41509.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia
           dentocariosa ATCC 17931]
          Length = 726

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 180/743 (24%), Positives = 298/743 (40%), Gaps = 74/743 (9%)

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           S+   + + G+S  +L   L      L ++         R    +   +     +     
Sbjct: 18  SKAVPDKFKGMSYHELNALL-----NLYDENGMIQFDADRQAARQYFLQ-----HVNNNT 67

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
              H+++    E     IE       L +      +  L       +     +LG    Y
Sbjct: 68  VFFHDLE----EKIEYLIENQYYEPELFDRYSFDFVKSLFKRAYAAKFRFPTFLGAFKFY 123

Query: 303 DRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
             Y L   +G R  E  +    RV M   L      K A E  + + S  F  +TPT  N
Sbjct: 124 TSYALKTFDGQRYLERFED---RVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLN 180

Query: 361 SGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G R   +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     
Sbjct: 181 AGKRQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIEN 240

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   +
Sbjct: 241 QSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTL 300

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    IPD+  +   +N    LFSP    D+  +YG  F     + +      + ++ + 
Sbjct: 301 SLGVVIPDITFELAKRNEDMYLFSP---YDVERIYGVAFSDINVSEKYYEMVDDSRIRKT 357

Query: 540 -ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I+A   ++ +  + FE+G+P++ F+D  N        G +  SNLC+EI   S      
Sbjct: 358 KINAREFFQTIAEVQFESGYPYVMFEDTVNR--SNPIEGKIIMSNLCSEILQVSKPSIYH 415

Query: 599 VCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650
                       S NL +       D D L  T+ TA+R L  V D  +  ++   ++ N
Sbjct: 416 DDLSYAEIGKDISCNLGSLNIAMTMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 475

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYS 709
               A+GLG M     L   H+ Y S E ++  +     +++HAI AS+E+A+ERG  + 
Sbjct: 476 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 535

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            F+ S +  G F    I    E + E         +  +R  W +L   V   GM N N 
Sbjct: 536 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 595

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I G + SI P    + ++     G       F+ N+             
Sbjct: 596 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 642

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                               +    ++EI    +I++ +   + +DQ  SL L+  +  +
Sbjct: 643 ------------------NLEYFQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIR 707


>gi|262184938|ref|ZP_06044359.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 716

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 183/734 (24%), Positives = 297/734 (40%), Gaps = 72/734 (9%)

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +    ++ E          LL            K  + A    +Q +       +  E 
Sbjct: 3   KTVAEPVKPEEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDLEE 62

Query: 264 VKARLLHESMMD------FDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSR 313
               L+     +      +D  ++ +  K    F F +      Y  Y        +G R
Sbjct: 63  KMRYLVDNKYYEPELLEQYDFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRR 122

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +    RV+M          K A    + + +  F  +TPT  N+G     +L SC
Sbjct: 123 YLERFED---RVSMTALFLADGDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSC 179

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 180 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLL 239

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 240 EDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFE 299

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
               N    LFSP    D+  +YGK F      E+YE   +   I+  +KI+A   ++ +
Sbjct: 300 LAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTV 355

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602
             + FE+G+P+I F+D  N R+     G ++ SNLC+EI   +S  E             
Sbjct: 356 AELQFESGYPYIMFEDTVN-RANPVKTGRINMSNLCSEILQVNSPSELNEDLTYKTLGSD 414

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +       D    A T+ TA+R L  V D    +++   +K N    AIGLG M
Sbjct: 415 ISCNLGSLNIAATMDSPDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQM 474

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGV 720
                L   HI Y S E ++  +     I + A+ AS +LA+ERG Y S F  S +  G 
Sbjct: 475 NLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGE 534

Query: 721 F-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           F     P D      +V++  A   ++  S   W +LK  V   G+ N N  A+ PT +I
Sbjct: 535 FFDRYDPADFAPRTEKVKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSI 594

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G        + N+                      
Sbjct: 595 SYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------------- 632

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
                      +    ++EI    +I++ +   K++DQ  SL L+  +  + + ++    
Sbjct: 633 ---------NLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQI 683

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 684 YAWRKGIKTLYYIR 697


>gi|71906603|ref|YP_284190.1| ribonucleotide reductase large subunit [Dechloromonas aromatica
           RCB]
 gi|71846224|gb|AAZ45720.1| Ribonucleotide reductase large subunit [Dechloromonas aromatica
           RCB]
          Length = 964

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 151/614 (24%), Positives = 242/614 (39%), Gaps = 73/614 (11%)

Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380
           RVA  LA  E           +       F+ +      +GT     L +CF+  V D +
Sbjct: 50  RVAYALAQVEQEADRAHWENKFLWAQENGFIPAGRINSAAGTDLQATLINCFVQPVGDSI 109

Query: 381 -------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
                   GI+ AL + A   +  GG+G D++ +R  GA + GT  ++ G + +++V + 
Sbjct: 110 VENTEGKPGIYTALAQAAETMRRGGGVGYDFSSIRPQGARVKGTQSRASGPVSYMRVFDR 169

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +   V   G R+GA    L   H D+EEF+  +     D+    + N +  + D FM+ V
Sbjct: 170 SCETVESAGARRGAQMGVLRCDHPDIEEFIHAK-----DKGDLTNFNISIGVTDPFMEAV 224

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             +    L    E +      G                  I V+RK+ A  LW +++   
Sbjct: 225 DADGDVELLHRAEPNADMRAAGAYQRE-----------DGIWVYRKVRARDLWDQVMKST 273

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-----L 608
           ++   P I F D  N  +   +  V+ ++N C E  L         C LGSINL      
Sbjct: 274 YDHAEPGILFLDRMNKDNNLNYCEVIEATNPCAEQPLPPY----GCCCLGSINLTLYVKD 329

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           A     +FD+D  A  IR + R+LDNV+D     +E+ ++     R +GLG  G   AL 
Sbjct: 330 AFSEQAEFDFDAFAEVIRISTRMLDNVLDATHWPLERQQQEAANKRRVGLGYTGLGDALA 389

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           +L + Y  PEA  +A    EF+   A   SVE+A+ERGA+  F   L+  G         
Sbjct: 390 MLRLRYDKPEARAMAARISEFMRDTAYMYSVEMAKERGAFPLFNAELYLSGGNF------ 443

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSY 786
                        +     ++K  ++  G+RNS+ ++IAPT TI+       S  I+P +
Sbjct: 444 -------------ASRLPTDVKAEIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPF 490

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              Y +     D T+   + V +               K+  G +  +            
Sbjct: 491 SWTYNRKKRMQDGTIK-EYSVEDYA---------WRLYKHRGGDVSKLP-------DFFV 533

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA EI      +  +    +ID + S  + +  +        +Y  AW  GLK     R 
Sbjct: 534 TALEISAQAHSDMVAAVAPFIDTSISKTVNVPADYPYTDFQDLYMSAWKSGLKGLATYRP 593

Query: 906 RSATSVEKSTLKGV 919
            S      S     
Sbjct: 594 NSVLGSVLSVTSSE 607


>gi|300741627|ref|ZP_07071648.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           dentocariosa M567]
 gi|300380812|gb|EFJ77374.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           dentocariosa M567]
          Length = 722

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 179/743 (24%), Positives = 298/743 (40%), Gaps = 74/743 (9%)

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           S+   + + G+S  +L   L      L ++         R    +   +     +     
Sbjct: 14  SKAVPDKFKGMSYHELNALL-----NLYDENGMIQFDADRQAARQYFLQ-----HVNNNT 63

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
              H+++    E     IE       L +      +  L       +     +LG    Y
Sbjct: 64  VFFHDLE----EKIEYLIENQYYEPELFDRYSFDFVKSLFKRAYAAKFRFPTFLGAFKFY 119

Query: 303 DRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
             Y L   +G R  E  +    RV M   L      K A E  + + S  F  +TPT  N
Sbjct: 120 TSYALKTFDGQRYLERFED---RVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLN 176

Query: 361 SGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           +G +   +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     
Sbjct: 177 AGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIEN 236

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   +
Sbjct: 237 QSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTL 296

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +    IPD+  +   +N    LFSP    D+  +YG  F     + +      + ++ + 
Sbjct: 297 SLGVVIPDITFELAKRNEDMYLFSP---YDVERIYGVAFSDINVSEKYYEMVDDSRIRKT 353

Query: 540 -ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I+A   ++ +  + FE+G+P++ F+D  N        G +  SNLC+EI   S      
Sbjct: 354 KINAREFFQTIAEVQFESGYPYVMFEDTVNR--SNPIEGKIIMSNLCSEILQVSKPSIYH 411

Query: 599 VCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650
                       S NL +       D D L  T+ TA+R L  V D  +  ++   ++ N
Sbjct: 412 DDLSYAEIGKDISCNLGSLNIAMTMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 471

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYS 709
               A+GLG M     L   H+ Y S E ++  +     +++HAI AS+E+A+ERG  + 
Sbjct: 472 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 531

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            F+ S +  G F    I    E + E         +  +R  W +L   V   GM N N 
Sbjct: 532 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 591

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I G + SI P    + ++     G       F+ N+             
Sbjct: 592 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 638

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                               +    ++EI    +I++ +   + +DQ  SL L+  +  +
Sbjct: 639 ------------------NLEYFQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 680

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 681 TRDINRAQIYAWRKGIKTIYYIR 703


>gi|256832971|ref|YP_003161698.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia
           denitrificans DSM 20603]
 gi|256686502|gb|ACV09395.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia
           denitrificans DSM 20603]
          Length = 705

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 170/737 (23%), Positives = 293/737 (39%), Gaps = 79/737 (10%)

Query: 195 ESDLETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
              L+   + +   L     E + +  +  AR    +   +     +   +K  +     
Sbjct: 2   TDQLDYHALNAMLNLYGPNGEIQFDKDREAARQYFLQHVNQNTVFFHSLEEKLDY----- 56

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
                    +E       +  +     +  L +     +     +LG    Y  Y L   
Sbjct: 57  --------LVENDYYEASVLNTYSREFITRLFDAAYAMKFRFETFLGAFKYYTSYTLKTF 108

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +G R  E  +     VA+ LA      E  A++  + + S  F  +TPT  NSG +   +
Sbjct: 109 DGKRYLERFEDRVCMVALTLA---DGDETLALQLVDEIISGRFQPATPTFLNSGKKQRGE 165

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 166 PVSCFLLRIEDNMESIARGVNSALQLSKRGGGVALLLSNLREFGAPIKKIENQSSGVIPV 225

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 226 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKTLSIGVVIPD 285

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
           +  +   +N    LFSP    D+  +YGK F     +        + ++ +  I A   +
Sbjct: 286 ITFELAKKNEDMYLFSP---YDVERIYGKPFADVNVSELYHEMVDDGRIRKTKIKARDFF 342

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAV 599
           + +  + FE+G+P++ F+D  N        G +  SNLC+EI         N       +
Sbjct: 343 QTIAELQFESGYPYVMFEDTVNK--SNPIKGKITHSNLCSEILQVSTPSTYNDDLSYKEI 400

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658
               S NL +       D   L +T+ TA+R L  V D  +  ++   +  N    AIGL
Sbjct: 401 GRDISCNLGSLNIAKAMDGGNLGATVDTAIRALTAVSDQTSIDSVPSIRHGNELGHAIGL 460

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
           G M     L   HI Y S E ++        +++HAI AS +LA ER  A+  F+ S + 
Sbjct: 461 GQMNLHGFLAREHIHYGSEEGIDFTSIYFYAVAYHAIKASNQLAIERGRAFGGFEDSTYA 520

Query: 718 QGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +       + E          ++  +   ++  W ELKK V   G+ N N  A+ PT
Sbjct: 521 SGEYFDKYTNRVWEPTTQRVKDLFEKFGIAIPTQDDWRELKKSVMEHGIYNQNLQAVPPT 580

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G       ++ N                    
Sbjct: 581 GSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAPYMTN-------------------- 620

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                      +  + +  A+EI    ++++ +   + +DQ  SL L+  +  + + ++ 
Sbjct: 621 -----------ENLEYYQDAYEIGYEKIVDTYAAATEHVDQGLSLTLFFKDTATTRDVNR 669

Query: 888 IYRQAWLMGLKTTYYLR 904
               AW  G+KT YY+R
Sbjct: 670 AQIYAWRKGIKTLYYIR 686


>gi|291280756|ref|YP_003497590.1| ribonucleotide reductase, large subunit [Deferribacter
           desulfuricans SSM1]
 gi|290755458|dbj|BAI81834.1| ribonucleotide reductase, large subunit [Deferribacter
           desulfuricans SSM1]
          Length = 868

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 151/667 (22%), Positives = 275/667 (41%), Gaps = 99/667 (14%)

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA----- 325
              ++  +    + L  + D       L      +         +     F  VA     
Sbjct: 26  WEYINKHVNEYYSLLHKKLDLGSTTDSL--FEGIFQKRNKKDYYKSFLDVFHTVAFKVAS 83

Query: 326 --------MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
                   +   + +    K+ V ++NL++   FM ++P L N+ + +   S+CF+  + 
Sbjct: 84  AKFVKYHNLNNYVTDINFIKKYVTYFNLMAQGIFMPNSPLLVNADSNNMCYSACFVLDID 143

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D +  IF  L+  A++ K  GG G +++ +R  GA +  T G+S G + F+++ N     
Sbjct: 144 DSMESIFETLKNTALIHKSGGGTGFNFSKLRQKGALVSSTKGESSGALSFMQIYNSATEH 203

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V QGG R+GA    L   H D+EEF+ +++    D +   + N +  I + F++ +  + 
Sbjct: 204 VKQGGVRRGANMGILNVDHPDIEEFIKIKR----DNKTLTNFNISVGITNKFLEAIKNDE 259

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W L  P+                             KV +K+ A  L+ +++   +  G
Sbjct: 260 EWELKEPNT---------------------------GKVIKKVRAKQLFDEIVKSAWICG 292

Query: 558 HPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----F 611
            P +   D  N  +  ++  G + ++N C E  L  +      CNLGSINL         
Sbjct: 293 DPGLLNIDTINKYNYLKYIKGNITATNPCGEQPLFPN----EACNLGSINLAKFVKSDAH 348

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            N  FD D  A  +      LD+VIDIN + + +  ++    R IGLG+MGF  AL  + 
Sbjct: 349 NNAYFDIDAFAKVVEDCTHFLDDVIDINNYPLPQITEAVEETRKIGLGVMGFADALIKMG 408

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S EA+ + D     +      AS++  ++ G +                   LL +
Sbjct: 409 ISYDSNEALTMIDSVGSVLKEKTEEASIKYGEQYGVFPLAD--------------KLLEK 454

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           V+     N+ SR  +  +K +      RN++   IAPT TI+ I G S  I+P +   Y+
Sbjct: 455 VKKLYKENKISRKEYTYIKDKYIK--RRNASLTCIAPTGTISLIAGCSSGIEPLFSLGYI 512

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           + +  G   V              W++++   +  ++            + +   TA +I
Sbjct: 513 REDSFGTRIV--------------WNDSVKHFVDKNN------------IPEYVKTAMDI 546

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            P W ++  S+ Q++++ A S  + L E  + + +  IY +A  +  K     R +S   
Sbjct: 547 SPDWHLKIQSKWQEYVESAVSKTINLPETATEEDIANIYLKAMELNCKGITVYRDKSKGV 606

Query: 911 VEKSTLK 917
              +T+ 
Sbjct: 607 QVLNTID 613


>gi|303232582|ref|ZP_07319268.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium
           vaginae PB189-T1-4]
 gi|302481369|gb|EFL44443.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium
           vaginae PB189-T1-4]
          Length = 766

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 184/752 (24%), Positives = 312/752 (41%), Gaps = 74/752 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      ++         + L P      ++       +  +     +  L   +  E 
Sbjct: 59  KEACKRYIEQEIMPRIMHFESL-PARLAYMVQHNYYDHTVINAYSTPFIQKL-YAIAAEE 116

Query: 290 DFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            F F   +G    Y  Y LH +     + Q    RV M         E+ A +    + +
Sbjct: 117 HFEFTSLMGAMKFYIAYALHTDDGAQILEQFE-DRVVMCAMFLANGNEELAKQLVKDMMA 175

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G +   +  SC+L  V D +  I   +  +  L+K  GG+    T +
Sbjct: 176 NRFQPATPTFLNAGKKRRGEYISCYLLRVEDTMESIARGISTSLQLSKRGGGVALCLTNL 235

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R   A I G   ++ GV+P +K+  DT    NQ G+R+GA   YL   H D+  FLD ++
Sbjct: 236 RETAAPIKGFENQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKR 295

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   QN    LFSP +V   +++          + + 
Sbjct: 296 ENADEKVRIKSLSLGVVIPDVTFRLAQQNKDMALFSPYDVKREYNV---ALSDLSVSEKY 352

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  ++ +  ISA   ++ +  + FE+G+P+I F+D  N  +P +  G +  SNLC+
Sbjct: 353 DELCANPRIHKTYISARKFFQTIAELQFESGYPYIMFEDTVNYCNPHKRAGRIVMSNLCS 412

Query: 587 EITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI               +       CNLGSIN+         D     S +R A+  LD 
Sbjct: 413 EIAQVSTPSSYTEDLSFTHVGVDVCCNLGSINIARAMD----DAPHFGSLVRHAIFALDR 468

Query: 635 VI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V    +       KK N+ + A+GLG M     L   HI Y SPEAV+  D     +++H
Sbjct: 469 VSRSSDLACAPSVKKGNNLNHAVGLGAMNLHGFLATHHIYYNSPEAVDFVDMFFYAMAYH 528

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPI-----DSIGLLAEVR---DELAMNRTSRLP 745
           A SAS +LAQ  G++S F  S +  G +       D+      VR    EL +   +R  
Sbjct: 529 AFSASCDLAQTYGSFSGFSNSEYADGSYFDKYTGADTAPSTPRVRALLAELGLTLPTRDD 588

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L +++K  G+ N++ MA+APT +I+ +   + S+ P    +  +         V ++
Sbjct: 589 WVSLVEKIKVRGLANAHLMAVAPTGSISYLSSCTPSLQPVVSAVETRKEGKIGRVYVPAY 648

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQ 864
                                          I +D  + +   A+E+    +I   +  Q
Sbjct: 649 ------------------------------NITNDNYRYYQDGAYEVGYEAIINIVAAAQ 678

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           K +DQA SL L++    + + L+  Y  A+    K+ YY+R      + +  L+G +   
Sbjct: 679 KHVDQAISLTLFMTSQATTRDLNKAYIYAFKKRCKSIYYVR------IRQDVLEGSEHLE 732

Query: 924 NAV--PVTDPNSSTHSLGIPSSCTSDTECEVC 953
           N      +   ++ +S  +   CT  +EC+VC
Sbjct: 733 NDEVIAGSADGAAGNSSSVNFVCTGSSECQVC 764


>gi|222109642|ref|YP_002551906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax ebreus TPSY]
 gi|221729086|gb|ACM31906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax ebreus TPSY]
          Length = 813

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 146/637 (22%), Positives = 247/637 (38%), Gaps = 79/637 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
            + + +L ++YF           +  F RVA  LA  E E  ++A+E  F + L +    
Sbjct: 16  PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDMRQALEARFLDNLRAGAIG 71

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D           GI+ AL+E A   +  GG+G D+
Sbjct: 72  AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L             G         
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWELVHGAAPGAELQAQG--------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 239 --AHQRADGQWVYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637
           C E  L         C+LG I L     N         FD+D     + T VR LDNV+D
Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    + + +  +   R IG+G  G  + L +L   Y   E  ++A +  E +   A  A
Sbjct: 353 VTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRREGRDMAVQIAERMRNAAYRA 412

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SVELA+E+GA+  F                   +    LA    +     +++K ++  G
Sbjct: 413 SVELAKEKGAFPKF-------------------DADGYLAKGTFASRLPADIQKAIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +      
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWSYTRRKREADGS-KSEYVVEDYA---- 508

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G + ++            +A ++     +      Q ++D A S  +
Sbjct: 509 -----WRLYKTLGGDVNHLP-------AYFVSAMDMAAADHVAMMEAVQPFVDTAISKTV 556

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  +        +Y QAW  GLK     R  S    
Sbjct: 557 NVPEDYPYADFKGLYMQAWHSGLKGLATYRPNSILGA 593


>gi|116670902|ref|YP_831835.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           sp. FB24]
 gi|116611011|gb|ABK03735.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter sp. FB24]
          Length = 727

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 168/736 (22%), Positives = 293/736 (39%), Gaps = 74/736 (10%)

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           Y GL   +L   L      L            R    +   +     +        H+++
Sbjct: 26  YKGLGYHELNAML-----NLYGPNGEIQFEADREAAHQYFLQ-----HVNNNTVFFHDLE 75

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
               E     ++     R   +      +  L N    ++     +LG    Y  Y L  
Sbjct: 76  ----EKLDYLVKNQYYERETLDQYTMNFIRELFNRAYKKKFRFETFLGAFKFYTSYTLKT 131

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +    RV M         E+ A++  + +    F  +TPT  N+G +   
Sbjct: 132 FDGKRFLERYED---RVCMVALHLARGDEQLALQMVDEIIEGRFQPATPTFLNAGKKQRG 188

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP
Sbjct: 189 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIP 248

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 249 VMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIP 308

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545
           D+  +   ++    LFSP    D+  +YG  F       +      + ++ +  I A   
Sbjct: 309 DITFELAKRDEDMYLFSP---YDVERVYGMPFSDVSVTEKYYEMVDDSRIKKTKIKAREF 365

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---TLNSSSEETAVCNL 602
           ++ +  + FE+G+P+I F+D  N        G +  SNLC+EI   +  ++  +    + 
Sbjct: 366 FQTLAEIQFESGYPYIMFEDTVNR--ENPIDGKIIMSNLCSEILQVSQPTTYHDDLSYDQ 423

Query: 603 G----SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
                S NL +       D      TI TA+R L  V D+ N  ++    + N    AIG
Sbjct: 424 TGKDISCNLGSLNIAKTMDSPDFGLTIETAIRSLSAVSDMSNITSVPSIARGNDQSHAIG 483

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    + Y S E ++  +     + +HA+ AS +LA +    +  F+ S +
Sbjct: 484 LGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAIQTGQTFGGFEKSKY 543

Query: 717 DQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
             G F       + +    +V +    ++  ++  W ELK  V   G+ N N  A+ PT 
Sbjct: 544 ASGEFFDKYTDQEWVPQTEKVAELFKNIHIPTQDDWRELKASVMEHGIYNQNLQAVPPTG 603

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + ++     G       +L N+                    
Sbjct: 604 SISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTND-------------------- 643

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
                        + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++  
Sbjct: 644 -----------NLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINKA 692

Query: 889 YRQAWLMGLKTTYYLR 904
              AW  G+KT YY+R
Sbjct: 693 QIYAWKKGIKTIYYIR 708


>gi|160903303|ref|YP_001568884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Petrotoga mobilis SJ95]
 gi|160360947|gb|ABX32561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Petrotoga mobilis SJ95]
          Length = 840

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 176/699 (25%), Positives = 298/699 (42%), Gaps = 93/699 (13%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKR 338
           L   ++ E         + IL DRYFL    G+ +E        R+A  +A  E      
Sbjct: 4   LNKWIQKEP----SKNAITILKDRYFLKDGEGNYLESTWDEVAKRIARHVAAAEVNYTND 59

Query: 339 AVE-------FYNLLSSFHFMCSTPTLFN---------------------------SGTR 364
             E       FY L+ S  F+ ++PT+FN                           S T+
Sbjct: 60  IEEIKNAEEHFYQLIKSRIFLPNSPTIFNAGKTMDRQLFKKDIEETTLEDYKTIFDSRTK 119

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           H  LS+CF+  + D +  IF A++  A++ KY GG+G D++ +R  G+ I GT GKS G 
Sbjct: 120 HNMLSACFVIPMDDSMSAIFDAVKNAALIMKYGGGVGYDFSVLRPKGSSIAGTGGKSSGP 179

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTAN 483
           I F+ V N  A  + QGG R+ A  A L   H DV +F++ +K+   ++     +++   
Sbjct: 180 ISFMHVFNTAASTIEQGGARRAAQMAVLRYDHPDVFDFINSKKDNKGNNVLNYFNISVNI 239

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             P  F K + ++   TL  P                               + + I A 
Sbjct: 240 DNPKEFKKMLEEDGDLTLEHPA----------------------------SSIRKTIKAN 271

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L  KM+   ++TG P + F    N          V ++N C E  L         CNLG
Sbjct: 272 DLMNKMVENAWKTGDPGMLFLGRHNQYYAMSEHTPVTATNPCGEEPLPPF----GSCNLG 327

Query: 604 SINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           SI++     +         D  +    +  AVR LD+VI+ N + +++ ++ +   R IG
Sbjct: 328 SIDVAKLVEDMDLGNPNSPDISEFQEIVYWAVRFLDDVIESNIYPLKEIEEISKKQRFIG 387

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG   AL+   +PY S +A +   +    +++ +  AS ELA+ERG +  F+ S + 
Sbjct: 388 LGMMGLADALYKKELPYNSEQARKFMAKLTAELAYFSHVASTELAKERGNFPDFQRSKYP 447

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
            G  P   +    +   ++   +  +    E  K       RN     IAPT +I+N+  
Sbjct: 448 NGFIPFPMLDDEIDEDIKVWNEKIRQHFQGEATKY-----KRNVQTNTIAPTGSISNLAD 502

Query: 778 VSQSIDPSYQNLYVK--SNMSGD---FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            S  I+P++   YV+  +N  GD    + +N  L+   K      E + +++    GSI 
Sbjct: 503 TSSGIEPNFLLSYVRYMTNKEGDRVPLSYINPILME--KIGTNMTEELKAEIIE-KGSIQ 559

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           NI+ IP+++KKI  T+ +I P   + +    Q ++D + S  + +    + + +  IY Q
Sbjct: 560 NIDSIPNEIKKIFVTSMDIPPKDHLLAQHVIQSYLDASCSKTINMPKSSTIEDVKAIYLQ 619

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           A  + LK     R  S  +   ++    + + +      
Sbjct: 620 ALELNLKGLTIYRDGSLETQVLTSSSQEEKETSETQGKS 658


>gi|227496666|ref|ZP_03926942.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM
           15434]
 gi|226833814|gb|EEH66197.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM
           15434]
          Length = 717

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 166/721 (23%), Positives = 290/721 (40%), Gaps = 81/721 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +     AR    +   +     +   +K  +              +EEG     + +   
Sbjct: 38  DADHEAARQYFLQHVNQNTVFFHDLEEKLEY-------------LVEEGYYEGHILDKYS 84

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332
              +  +       +     +LG    Y  Y L   +G R  E  +    RV+M      
Sbjct: 85  PDFVKQVFKAAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFED---RVSMVALALA 141

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391
              E+ A++    + +  F  +TPT  N G     +  SCFL  + D++  I   +    
Sbjct: 142 DGDEQLALDLVEEMMTGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSAL 201

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R +GA I     +S GV+P +K+  D+    NQ G R+GA   Y
Sbjct: 202 QLSKRGGGVALLLTNLREMGAPIKRIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 261

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +         LFSP    D+ 
Sbjct: 262 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNKEPMYLFSP---YDVE 318

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            +YG  F       + +    + ++ +  I A   ++ +  + FE+G+P++ F+D  N  
Sbjct: 319 RVYGVPFSDISVTEKYREMVDDPRIHKTRIDARQFFQTLAEIQFESGYPYVMFEDTVNKA 378

Query: 571 SP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           +P             +  V  ++   E    +   +   CNLGS+N+         D   
Sbjct: 379 NPIKGKVIMSNLCSEILQVSEASTLNEDLSFAHVGKDISCNLGSLNIAKT-----MDSPD 433

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              TIRTAVR L  V D ++  ++    + NH   AIGLG M     L    I Y S E 
Sbjct: 434 FMRTIRTAVRGLTAVSDQVDLPSVPSINRGNHESHAIGLGQMNLHGYLARERIFYGSEEG 493

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVR 733
           ++  +     + + A++A+ ELA ER  ++  F+ S +  G F       D + +  +V+
Sbjct: 494 LDFTNVYFACVLYAALTATNELAVERGESFVGFEDSDYYSGAFFEKYTAQDFLPVTDKVK 553

Query: 734 DELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           +    +     +R  W  L KR++  GM N N  A+ PT +I+ I   + SI P    + 
Sbjct: 554 ELFERSSITVPTREDWAALAKRIRETGMYNRNLQAVPPTGSISYINNSTSSIHPIVAKIE 613

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G       ++ N                               +  + +  A+
Sbjct: 614 IRKEGKIGRVYYPAPYMTN-------------------------------ENLEYYQDAY 642

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R R A
Sbjct: 643 EIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWRKGIKTLYYIRLRQA 702

Query: 909 T 909
            
Sbjct: 703 A 703


>gi|163842201|ref|YP_001626606.1| ribonucleotide-diphosphate reductase subunit alpha [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955677|gb|ABY25192.1| ribonucleoside-diphosphate reductase alpha chain [Renibacterium
           salmoninarum ATCC 33209]
          Length = 706

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 174/741 (23%), Positives = 296/741 (39%), Gaps = 84/741 (11%)

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           Y GL   +L   L      L + + N      R    +   +     +        H+++
Sbjct: 5   YQGLGYHELNAML-----NLYDADGNIQFDADREAAHQYFLQ-----HVNNNTVFFHDLE 54

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
               E     ++     R   +      +  L N    ++     +LG    Y  Y L  
Sbjct: 55  ----EKLDYLVKNQYYERETLDQYTMNFIRELYNRAYKKKFRFETFLGAFKFYTSYTLKT 110

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +    RV M         E  A++  + +    F  +TPT  N+G     
Sbjct: 111 FDGKRFLERYED---RVCMVALHLARGNEDLALKLVDEIIDGRFQPATPTFLNAGKAQRG 167

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP
Sbjct: 168 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIP 227

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +P
Sbjct: 228 VMKLLEDSFSYANQLGARQGAGAVYLHAHHPDINRFLDTKRENADEKIRIKTLSLGVVVP 287

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545
           D+  +   ++    LFSP    D+  +YG  F       +      + ++ +  I A   
Sbjct: 288 DITFELAKRDEDMYLFSP---YDVEKVYGIPFSDISVTEKYYEMVDDSRIKKTKIKAREF 344

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593
           ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               + 
Sbjct: 345 FQTLAEIQFESGYPYIMFEDTVNRANPI--EGKIIMSNLCSEILQVSKPTVYNDDLSYAE 402

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
           + +   CNLGS+N+         D     +TI T++R L  V D+ +  ++    K N  
Sbjct: 403 TGKDISCNLGSLNIART-----MDSPDFGNTIETSIRALSAVSDMSDIRSVPSIAKGNRA 457

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
            RAIGLG M     L    + Y S E ++  +     + +HA+ AS  LA E    +  F
Sbjct: 458 SRAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYTVVYHALRASNLLAIETGETFGGF 517

Query: 712 KGSLWDQGVFPI---DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           + S +  G F     D   L    R       ++  ++  W  LK  +   G+ N N  A
Sbjct: 518 ENSKYASGEFFDKYTDQERLPQTERVRELFANVHIPTQDDWRSLKASIMEHGIYNQNLQA 577

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824
           + PT +I+ I   + SI P    + ++     G       +L N+               
Sbjct: 578 VPPTGSISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND--------------- 622

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                             + +  A+EI    +I++ +   + +DQ  SL L+  +  S +
Sbjct: 623 ----------------NLEFYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTASTR 666

Query: 884 KLDFIYRQAWLMGLKTTYYLR 904
            ++     AW  G+KT YY+R
Sbjct: 667 DINKAQIYAWRKGIKTVYYIR 687


>gi|41409198|ref|NP_962034.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|41398018|gb|AAS05648.1| NrdE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 726

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 173/728 (23%), Positives = 295/728 (40%), Gaps = 79/728 (10%)

Query: 212 KEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGV 264
            E +Y  + A   L       +  ++VL       Q    + +      E     I E  
Sbjct: 24  DETDYHALNAMLNLYDADGKIQFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENY 83

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFM 322
             R + +      +  L +    ++     +LG    Y  Y L   +G R  E  +   +
Sbjct: 84  YEREVLDQYSRNFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVV 143

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381
            VA+ LA  +      A +  + +    F  +TPT  NSG +   +  SCFL  + D++ 
Sbjct: 144 MVALTLAAGD---TGLAEKLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNME 200

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ 
Sbjct: 201 SIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQL 260

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    L
Sbjct: 261 GARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYL 320

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPW 560
           FSP    D+  +YG  F       +      + ++ +  I A   ++ +  + FE+G+P+
Sbjct: 321 FSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPY 377

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +P    G +  SNLC+EI               +   +   CNLGS+N+ 
Sbjct: 378 IMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA 435

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A TI  A+R L  V D  +  ++   ++ N+   AIGLG M     L
Sbjct: 436 KT-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYL 490

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F     
Sbjct: 491 AREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYT 550

Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             + E           +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   
Sbjct: 551 EQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHS 610

Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++     G       ++ N+                            
Sbjct: 611 TSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------------------- 642

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896
                + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     AW  G
Sbjct: 643 ---NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKG 699

Query: 897 LKTTYYLR 904
           +KT YY+R
Sbjct: 700 IKTLYYIR 707


>gi|291302019|ref|YP_003513297.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571239|gb|ADD44204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stackebrandtia nassauensis DSM 44728]
          Length = 946

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 128/638 (20%), Positives = 224/638 (35%), Gaps = 66/638 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + +    E   LL   +F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 119 GYFASPKDAQIFEEELTWLLLHQYFSFNSPVWFNVGTPDPQQVSACFILSVDDTVDSILN 178

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 179 WYREEGLIFKGGSGAGLNLSRIRASKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 237

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF+D +    D  R                   +  + N +  +
Sbjct: 238 RAAKMVILDVDHPDIEEFIDTKAREEDKVRALRDAGFDMDLGGKDIVSVQYQNANNSVRV 297

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V     +                               R +     ++ A  +
Sbjct: 298 TDEFMRAVEAGGDY---------------------------ALRARLDGSEIERLDAKTV 330

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +RKM    +E   P I F +  N        G +  SN C+E        + + CNL S+
Sbjct: 331 FRKMAQAAWECADPGIQFDNIINDWHTNPETGRITGSNPCSEYMH----IDNSSCNLASL 386

Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+    ++  FD +     +   +  ++  I       E   K+   HR +G+G     
Sbjct: 387 NLMKFLKDDGSFDVELFTKAVEFVITAMEISISFADFPTEAITKNTRAHRQLGIGYANLG 446

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L      Y S E   +A      ++  +   S ELA   G Y ++  +          
Sbjct: 447 ALLMASGFAYDSDEGRAVAAGITSLMTGVSYRRSAELAGVVGPYDAYALNADAHKRVMRK 506

Query: 725 SIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  V+    M+R     +   W          G RNS    IAPT TI  +    +
Sbjct: 507 HAAACDNVKTYGVMDREILKAAVSEWQNGNNIGDKNGWRNSQASVIAPTGTIGFMMDCDT 566

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDE--AMISDLKYHDGSIGNIER 836
             I+P    + + K    G   +VN  +   LK      E    I++     G + +   
Sbjct: 567 TGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKTLGYQTESIEAITEYIAEHGHVVDAPG 626

Query: 837 IPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +  +   +   A     I  M  +   +  Q ++  A S  + + E  + +  + IY ++
Sbjct: 627 LRPEHYSVFDCAMGERSISAMGHVRMMAAAQPFVSGAISKTVNVPESATVEDFEEIYFES 686

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           W +GLK     R  S      S  K          V +
Sbjct: 687 WKLGLKALAVYRENSKVGQPLSVSKKDTEADEPEKVIE 724


>gi|325963522|ref|YP_004241428.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469609|gb|ADX73294.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 706

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 165/677 (24%), Positives = 280/677 (41%), Gaps = 70/677 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     ++     R   +      +  L N    ++     +LG    Y  Y L   +G 
Sbjct: 55  EKLEYLVKNDYYERETLDQYTMNFIRELFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 114

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M         E+ A +  + +    F  +TPT  N+G +   +L S
Sbjct: 115 RFLERYED---RVCMVALHLARGNEQLATQMVDEIIEGRFQPATPTFLNAGKKQRGELVS 171

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP +K+
Sbjct: 172 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKL 231

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 232 LEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITF 291

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +   ++    LFSP    D+  +YG  F       +      + ++ +  I A   ++ +
Sbjct: 292 ELAKRDEDMYLFSP---YDVERVYGMPFSDVSVTEKYYEMVDDSRIKKTKIKAREFFQTL 348

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI               + + + 
Sbjct: 349 AEIQFESGYPYIMFEDTVNRANPI--DGKIIMSNLCSEILQVSQPTTYNDDLSYADTGKD 406

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      TI TA+R L  V D+ N  ++    K N    AI
Sbjct: 407 ISCNLGSLNIAKT-----MDSPDFGLTIETAIRSLSAVSDMSNITSVPSIAKGNDQSHAI 461

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    + Y S E ++  +     + +HA+ AS  LA E    +  F+ S 
Sbjct: 462 GLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNLLAIETGQTFGGFEKSK 521

Query: 716 WDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G +       + +    +VR+    ++  ++  W  LK  V   G+ N N  A+ PT
Sbjct: 522 YASGEYFDKYTEQEWVPQTEKVRELFKNVHIPTQADWLALKASVMEHGIYNQNLQAVPPT 581

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G       +L N+                   
Sbjct: 582 GSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTND------------------- 622

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                         + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++ 
Sbjct: 623 ------------NLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINK 670

Query: 888 IYRQAWLMGLKTTYYLR 904
               AW  G+KT YY+R
Sbjct: 671 AQIYAWKKGIKTIYYIR 687


>gi|220912865|ref|YP_002488174.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           chlorophenolicus A6]
 gi|219859743|gb|ACL40085.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 712

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 167/677 (24%), Positives = 280/677 (41%), Gaps = 70/677 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     ++     R   +      +  L N    ++     +LG    Y  Y L   +G 
Sbjct: 61  EKLEYLVKNDYYERETLDQYTMNFIRDLFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M         E+ A++  + +    F  +TPT  N+G +   +L S
Sbjct: 121 RFLERYED---RVCMVALHLARGNEQLALQMVDEIIDGRFQPATPTFLNAGKKQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP +K+
Sbjct: 178 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKL 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +   ++    LFSP    D+  +YG  F       +      + ++ +  I A   ++ +
Sbjct: 298 ELAKKDDDMYLFSP---YDVEKVYGMPFSDVSVTEKYYEMVDDSRIKKTKIKAREFFQTL 354

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI                 + + 
Sbjct: 355 AEIQFESGYPYIMFEDTVNRANPI--DGKIIMSNLCSEILQVSQPTTYHDDLSYDDTGKD 412

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      TI TA+R L  V D+ N  ++    K N    AI
Sbjct: 413 ISCNLGSLNIAKT-----MDSPDFGLTIETAIRSLSAVSDMSNITSVPSIAKGNDQSHAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    + Y S E ++  +     + FHA+ AS  LA E    +  F+ S 
Sbjct: 468 GLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVFHAVRASNLLAIETGQTFGGFEKSK 527

Query: 716 WDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G F       + +    +VR+    ++  ++  W  LK  V   G+ N N  A+ PT
Sbjct: 528 YASGEFFDKYTEQEWVPQTEKVRELFKDVHIPTQADWLALKASVMEHGIYNQNLQAVPPT 587

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G       +L N+                   
Sbjct: 588 GSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTND------------------- 628

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                         + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++ 
Sbjct: 629 ------------NLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINK 676

Query: 888 IYRQAWLMGLKTTYYLR 904
               AW  G+KT YY+R
Sbjct: 677 AQIYAWKKGIKTIYYIR 693


>gi|319761225|ref|YP_004125162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans BC]
 gi|317115786|gb|ADU98274.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicycliphilus denitrificans BC]
          Length = 811

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 144/663 (21%), Positives = 247/663 (37%), Gaps = 79/663 (11%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFM 352
            + + +L ++YF           +  F RVA  LA   +E  +E     F + L +    
Sbjct: 16  PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDIREAMQARFLDNLRAGAIG 71

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D           GI+ AL+E A   +  GG+G D+
Sbjct: 72  AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD FM+ V Q+  W L             G E       
Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWELVH-------SAAPGAELLKEGAR 240

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      ++R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 241 QRADGQ----WIYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637
           C E  L         C+LG I L     N         FD+D     + T VR LDNV+D
Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    + + +      R IG+G  G  + L +L   Y   +  ++A +  E +   A  A
Sbjct: 353 VTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYRA 412

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SVELA+E+GA+  F+                       LA    +    ++++K+++  G
Sbjct: 413 SVELAKEKGAFPKFQ-------------------ADGYLAKGTFASRLPEDIQKQIRKHG 453

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           +RNS+ ++IAPT T++       S  I+P +   Y +     D +  + ++V +      
Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYA---- 508

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                    K   G +  +            +A ++     +      Q ++D A S  +
Sbjct: 509 -----WRLYKTLGGDVNQLP-------AYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556

Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            +  +        +Y QAW   LK     R  S                   P  +P   
Sbjct: 557 NVPEDYPYADFKGLYMQAWHSRLKGLATYRPNSILGAVLEVPAAEAKPAKGEPAPEPAQP 616

Query: 935 THS 937
              
Sbjct: 617 VDP 619


>gi|56478191|ref|YP_159780.1| ribonucleotide reductase, coenzyme B12-dependent [Aromatoleum
           aromaticum EbN1]
 gi|56314234|emb|CAI08879.1| Ribonucleotide reductase, Coenzyme B12-dependent [Aromatoleum
           aromaticum EbN1]
          Length = 963

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 152/635 (23%), Positives = 255/635 (40%), Gaps = 74/635 (11%)

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-- 381
           A+ +   E ++     +F        F+ +      +GT     L +CF+  V D +   
Sbjct: 50  ALAIVEAEDKRAHWEAKFLE-AQEKGFVPAGRINSAAGTNLQATLINCFVQPVGDSVTEA 108

Query: 382 -----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
                GI+ AL + A   +  GG+G D++ +R  GA + GT   + G + +++V + +  
Sbjct: 109 VDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGALVRGTLSNASGPVSYMRVFDRSCE 168

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V   G R+GA    L   H DVEEF+  +     D     + N +  + D FMK V  +
Sbjct: 169 TVESAGARRGAQMGVLRCDHPDVEEFIHAK-----DHGDLTNFNISVGVSDAFMKAVDTD 223

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           A   L    E  +     G                  + V+RK+ A  LW +++   ++ 
Sbjct: 224 ADVELAHKAEPIEELKAAGAY-----------QRDDGLWVYRKLPARELWDQIMRSTYDH 272

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615
             P I F D  N  +   +   + ++N C E  L         C+LGSINL     +   
Sbjct: 273 AEPGILFLDRMNQDNNLHYCETIEATNPCAEQPLPPY----GCCDLGSINLTPFIKHPFT 328

Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FDY      +  A+R+LDNV+D+    + + +    + R +GLG  G   AL +L 
Sbjct: 329 DKAEFDYPAFGKVVDVAIRMLDNVLDVTHWPLPQQENEAQSKRRVGLGFTGLGDALIMLC 388

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y SP+A  +A +  E++   A  ASVELA+ERGA+  F   L+  G            
Sbjct: 389 KRYDSPDARAVATKISEYMRDRAYLASVELAKERGAFPLFNADLYLSGGNF--------- 439

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNL 789
                     +     +LK +++  G+RNS+ ++IAPT TI+       S  I+P +   
Sbjct: 440 ----------ASRLPADLKDKIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPFSYT 489

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +     D T    + V +               K+  G++       D+L     TA 
Sbjct: 490 YTRRKRMADGTYK-EYPVEDYA---------WRLFKHLGGNV-------DELPPYFVTAL 532

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           EI      +  +    ++D + S  + +  +    + + +Y  AW  GLK     R  S 
Sbjct: 533 EISAQAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFEDLYLSAWKAGLKGLATYRPNSV 592

Query: 909 TSVEKS-TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                S T      +   +  + PN       +P+
Sbjct: 593 LGSVLSVTPSAAPKQPQDIEFSGPNKRLAIKSLPA 627


>gi|13242411|ref|NP_077434.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 9]
 gi|11036563|gb|AAG27192.1|AF275348_12 ribonucleotide reductase, large subunit [Cercopithecine herpesvirus
           9]
          Length = 783

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 167/688 (24%), Positives = 285/688 (41%), Gaps = 79/688 (11%)

Query: 286 KYERDFA----------FEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKE 332
             ERD               LGLQ        Y   +  ++IE  + FF+R+A  + ++ 
Sbjct: 106 DIERDILEPFRQTQYVKLTSLGLQSALKYEEFYLTKLEDNKIESLEQFFIRLATAVTIEV 165

Query: 333 TEK----------------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
            +                       F+N+LS    + +TP +   G      +SC++   
Sbjct: 166 MKIPNIAYLIPGTYSAYTWTDMCSVFFNMLSRQLIIPATPVMMFLGRETGATASCYIMDP 225

Query: 377 P--DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
              +    I     +   + +  GG+G     +      I   + +++G +  LK+ +  
Sbjct: 226 KSTNVRDAIRAITGDVGTVLQSRGGVGISLQSLN-----IVPNHTETKGALAILKLLDSM 280

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV 493
            +A+N   +R   VC Y+E WH+D+   L  R     D+  R  ++    W+PDLF+KR 
Sbjct: 281 VMAINSDSERPTGVCVYVEPWHVDIRSILCTRGMLVRDEAYRCDNIFYCMWMPDLFLKRY 340

Query: 494 TQ------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            Q      N  WTLF  +  + L +LYG +F   Y   ERQ           I    L  
Sbjct: 341 IQYVQGTQNVTWTLFD-NRANVLCNLYGDDFTAEYLKLERQ-----GIGVTTIPIQELAF 394

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSIN 606
            ++     TG P++ FKD CN        G  +  SNLCTE+   ++     VCNL +IN
Sbjct: 395 LIVKSSAVTGSPFVMFKDACNRNYHMNVQGDAITGSNLCTEVIQKANPNMHGVCNLANIN 454

Query: 607 LLAHFANNQFD------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           +     N   D      +  L   +RTAV  L+ V+       +K+ +    +R++G+G+
Sbjct: 455 IANCILNGDEDGPPEFSFADLTFAVRTAVVFLNGVLAAGNFPCKKSCEGVANNRSLGIGI 514

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER--GAYSSFKGSLWDQ 718
            G  +A   L +    P A  +  E  E + + A+  S+ + ++     +  F+ S +  
Sbjct: 515 QGLHTAFLRLGLDLTCPRARRLNVEITESMLYEAMFVSMNMCKQCGLQPFHEFENSKYAS 574

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G    D                   LPW+EL+  +   G+ NS  +A  PT   A +   
Sbjct: 575 GWLHFD----------GFPTCSYLNLPWEELRDDICQYGLYNSQFLAFMPTVASAQVTEC 624

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKYHDGSI-GNI 834
           S+   P + N++ K  +SG+    N  L++EL++    +E    +I  L+ +  S+    
Sbjct: 625 SEGFSPVFTNMFSKVTISGETLRPNLELMDELRKLYPHEEDRSRIIQQLEKNQWSVLRTF 684

Query: 835 ERIPDDLKKI-HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFI 888
             +          TAFE     L++    R  +IDQ+QS++L+++E      S   +  +
Sbjct: 685 GCLNARHPLYKFKTAFEYSQADLVDMCVDRAPFIDQSQSMSLFIEERPNGAVSAATIMNL 744

Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKST 915
             +A+  GLKT  YY + R AT+    T
Sbjct: 745 LVRAYKGGLKTGMYYCKIRKATNSGLFT 772


>gi|297570726|ref|YP_003696500.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931073|gb|ADH91881.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 716

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 177/678 (26%), Positives = 287/678 (42%), Gaps = 62/678 (9%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     I EG     + ++  D D+  L       +     +LG    Y  Y L   +G 
Sbjct: 65  EKLDYLITEGYYEPKVFDAYSDDDVKALYKQAYAHKFRFPTFLGAFKYYTSYTLKTFDGK 124

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
           R  E  +   + VA+ LA       + A    + + +  F  +TPT  N+G +   +L S
Sbjct: 125 RYLERFEDRVVVVALTLAAG---NVELAKNLVDEILTGRFQPATPTFLNAGKKARGELVS 181

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  V D++  I   +     L+K  GG+  + + +R LGA I     +S GV P +K+
Sbjct: 182 CFLLRVEDNMESISRGINSALQLSKRGGGVALNLSNLRELGAPIKRIENQSSGVNPVMKL 241

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 242 LEDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 301

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548
           +   +NA   LFSP    D+  +YG  F      E YE   D   I+  + I+A   ++ 
Sbjct: 302 ELAKKNADMYLFSP---YDVERVYGVPFTEISVTEKYEEMVDDRRIRKTK-INARQFFQT 357

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCN 601
           +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI         N+      V  
Sbjct: 358 LAEIQFESGYPYIVYEDTVNRANPI--DGRITMSNLCSEILQVSEPSRYNADLSYEHVGK 415

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D      T+ TA+R L  V D  N   +   ++ N    AIGLG 
Sbjct: 416 DISCNLGSLNIAKTMDSPDFGQTVETAIRALTAVSDQTNIAAVPSIERGNDMSHAIGLGQ 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           M     L    I Y S EA++  +     +++HAI +S+ +A+ERG  +  F+ S +  G
Sbjct: 476 MNLHGYLGREKIFYGSDEALDFTNIYFYTVAYHAIRSSMLIAKERGVRFEGFERSAYADG 535

Query: 720 VFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            +    I                 ++  +   W  L+  V   GM N N  A+ PT +I+
Sbjct: 536 SYFAKYIEREWAPETARVRELFANVHIPTVADWVALRDAVAAHGMYNQNLQAVPPTGSIS 595

Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++     G      ++L N+                       
Sbjct: 596 YINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAYLTND----------------------- 632

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                    K+ +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++  Y  
Sbjct: 633 --------NKEYYQDAYEIGPKAIIDTYAAATQHVDQGLSLTLFYPDTVTTRDVNKSYIY 684

Query: 892 AWLMGLKTTYYLRSRSAT 909
           AW  G+K+ YY+R R A 
Sbjct: 685 AWRKGIKSLYYMRIRQAA 702


>gi|238801852|ref|YP_002922902.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage WV8]
 gi|216263065|gb|ACJ71933.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria
           phage WV8]
          Length = 723

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 162/777 (20%), Positives = 294/777 (37%), Gaps = 78/777 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I   +GT++SF+ +RL      A    + +    V  E  K +Y+G +  ++  A+I  
Sbjct: 4   TIKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDV 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                 +E  Y+ +  R LL  + +E      K P   T           F + +E    
Sbjct: 62  CVDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNMERAGL 108

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323
              +       +L YL   + + +D ++ Y  L+   D+Y +     G   E PQ  FM 
Sbjct: 109 WEKMD--YSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMG 166

Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           +AM       +  + +  ++ Y  LS       TP L          +SC L    D   
Sbjct: 167 MAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAE 226

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +  A +    +     G+G      R +G  I     +  G +P+ K+   +  A N+ 
Sbjct: 227 SLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEA-NKQ 284

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R G+   +       +E+ L L+  T    +R ++M+ +    D F + V  +  W L
Sbjct: 285 KSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLL 344

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           FS  +   L+D++       +      A    +K  R++ A  + +  +   + TG  + 
Sbjct: 345 FSYKDAPKLYDMFYTASADEFAMAVGHAVHSGVK-HRRVKAREIAKLFIQQRYATGRVYP 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----------GSINLLAHF 611
            F +  N  +P      +  SNLC EI L     E                 ++  LA  
Sbjct: 404 FFTNNANTHTPF--KEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFLASL 461

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
              +   D+ A     A+ ++D+VID+  +     +      R++G+GL      L   +
Sbjct: 462 VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTNVAHYLAKNY 521

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y+S        E  E  S++   AS+ LA+ERG     K + + +G  P  +     +
Sbjct: 522 VNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGWVPPKTANKKID 581

Query: 732 VRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
            +     +   R  WD+L +R+K   G+RNS   A  P  + +     +  + P    + 
Sbjct: 582 EK----HDAKLRYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNGLYPIRDFIL 637

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            K + +G+   +                                    ++LK ++  A++
Sbjct: 638 TKKSATGNVLFIVPDY--------------------------------EELKYVYEIAWD 665

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKTTYY 902
           ID   +I+  +  QK+  QA S + Y+D    KK+           A  +G+KT YY
Sbjct: 666 IDTFDMIDCYAIAQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVGMKTMYY 722


>gi|257464835|ref|ZP_05629206.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor 202]
 gi|257450495|gb|EEV24538.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor 202]
          Length = 554

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 159/581 (27%), Positives = 249/581 (42%), Gaps = 94/581 (16%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGFAEKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSGYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGREWLESMKAGDPYK--------------- 209

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L SSS+E+ VC L S+NLL        D  ++ +     V   
Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                     + +A K    HRA+GLG++G+ S L   +IP+ S EA++  +   + +  
Sbjct: 303 FIEKSKEIPFLHRATKFAIRHRALGLGVLGWHSYLQANNIPFDSFEAMQKNNLIFKTLQE 362

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             + AS ELAQ  G     KG                                       
Sbjct: 363 KTLKASQELAQRFGEPELLKG--------------------------------------- 383

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  M+IAPT + + I G VS S++P   N YVK          N FL   LK
Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLK 440

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L  E +   + ++DGS+ ++E++ +  K +  T  EI  + +I+ A++RQK+IDQ Q
Sbjct: 441 EKGLDKEEIWESILHNDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAAQRQKYIDQGQ 500

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           S+NL +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 501 SINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541


>gi|255327221|ref|ZP_05368296.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           mucilaginosa ATCC 25296]
 gi|255295839|gb|EET75181.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia
           mucilaginosa ATCC 25296]
          Length = 726

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 175/743 (23%), Positives = 300/743 (40%), Gaps = 76/743 (10%)

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ++    + G+S  +L   L      L ++         R    +   +     +      
Sbjct: 19  KSVPEKFKGMSYHELNALL-----NLYDENGQIQFDADRQAARQYFLQ-----HVNNNTV 68

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
             H+++    E     IE       L +      +  L       +     +LG    Y 
Sbjct: 69  FFHDLE----EKIEYLIENQYYEPELFDKYNFQFIKNLFKRAYAVKFRFPTFLGAFKFYT 124

Query: 304 RYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
            Y L   +G R  E  +    RV M   L     EK A +  + + S  F  +TPT  N+
Sbjct: 125 SYALKTFDGQRYLERFED---RVCMVALLLAEGNEKLAEDIVDEIISGRFQPATPTFLNA 181

Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           G +   +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +
Sbjct: 182 GKKQRGELVSCFLLRMEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQ 241

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++
Sbjct: 242 SSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKIRIKTLS 301

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFR 538
               IPD+  +   +N    LFSP +V  ++ +          Y      A   + K   
Sbjct: 302 LGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDARITKSK--- 358

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSS 594
            I+A   ++ +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI       +  
Sbjct: 359 -INAREFFQTIAEIQFESGYPYVMFEDTVNRANPI--AGKIIMSNLCSEILQVSEPSTYH 415

Query: 595 EETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650
            +     +G   S NL +       D D    T+ TA+R L +V D  +  ++   ++ N
Sbjct: 416 ADLGYETVGKDISCNLGSLNIALTMDGDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGN 475

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
               A+GLG M     L   H+ Y S EA++  +     +++HAI AS+++A+ER   + 
Sbjct: 476 GMSHAVGLGQMNLHGYLAREHVYYGSEEALDFTNMYFYTVAYHAIRASMQIAKERGQRFE 535

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            F+ S +  G F    I      + E         +  +R  W +L   V   GM N N 
Sbjct: 536 GFENSKYASGEFFAKYIEKEWAPQTERTRELFAKHHIPTREEWIQLAADVAQYGMYNQNL 595

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I G + SI P    + ++     G       ++ N              
Sbjct: 596 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPYMTN-------------- 641

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                            +  + +  ++EI    +I++ +   + +DQ  SL L+  +  +
Sbjct: 642 -----------------ENLEYYQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIR 707


>gi|88705203|ref|ZP_01102914.1| Ribonucleotide reductase large subunit [Congregibacter litoralis
           KT71]
 gi|88700293|gb|EAQ97401.1| Ribonucleotide reductase large subunit [Congregibacter litoralis
           KT71]
          Length = 715

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 144/624 (23%), Positives = 245/624 (39%), Gaps = 60/624 (9%)

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-T 375
           F RVA  LA  ET   +   E +          +   + N+G    +      +C ++  
Sbjct: 49  FKRVAAALAKVETSDHEDWKEKFEWALRNGATPAGRIMSNAGAEKYKPSTSTINCTVSGP 108

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D + GI  A  E  +  K   G+G +++ +R  GA++ G   ++ G + F+++ + T 
Sbjct: 109 ISDSMEGILQANLEAGLTLKAGCGIGYEFSTLRPSGANVAGAGAETSGPLSFMEIFDATC 168

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+  G R+GA     +  H DV EF+  ++  G         N +  I D FM+ V  
Sbjct: 169 KTVSSAGGRRGAQMGTFDVSHPDVFEFIRAKRTDG----MLRQFNLSLLITDEFMEAVKA 224

Query: 496 NAGWTLFSPDEVSDLHDLY---------GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
              W L  P +  +L D            K F I       +      K++  + A  LW
Sbjct: 225 EGDWPLVFPIKADNLEDAEKKAGSRGILWKYFPITDGYLSNEVGEVACKIYNVVKARELW 284

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +++++ ++   P     D  N+ +       + S+N C E  L         C LGS+N
Sbjct: 285 DEVMSLTYDYAEPGFILIDKYNVMNNNWFCENIRSTNPCGEQGLPYY----GSCLLGSVN 340

Query: 607 LLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L     +       FD+DK         R++DNV++IN   + +  +   T R  G+G +
Sbjct: 341 LTRFIVSPFTDRAAFDWDKFREVTAIFTRMMDNVVEINGLPLPEQVEEITTKRRHGIGYL 400

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G  SA+ L+ + Y S EAV   D     ++       +ELA+E+GA      +    G  
Sbjct: 401 GLGSAVTLMGMRYGSEEAVAFTDRVSRELAVVGWKVGLELAKEKGAAPILDKNYDVTGEM 460

Query: 722 -------PIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAP 768
                    D   L  +V   + M R SR          +L   ++  G R ++  +IAP
Sbjct: 461 LNARPEMIADGFKLGDKVSGRVLMARYSRYMQTIAEVEPQLVAEIEQHGARFTHHSSIAP 520

Query: 769 TATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           T TI  +     S  I+PS+ + Y+++             +   K+     E    +L  
Sbjct: 521 TGTIAFSFANNSSNGIEPSFAHSYMRNI------------IKAGKKTKQQTEVQSFELLA 568

Query: 827 HDGSIGN-----IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
           +   I           P+ L     T  +I P   ++  +  QKWID + S  + +  E 
Sbjct: 569 YRHLINPEADPYATEGPNKLPDYFITTNDISPKEHVDMQAASQKWIDSSISKTVNVPTEI 628

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904
                  +Y  A+  GLK     R
Sbjct: 629 PYDSFKDVYMYAYERGLKGCTTFR 652


>gi|125541523|gb|EAY87918.1| hypothetical protein OsI_09340 [Oryza sativa Indica Group]
          Length = 676

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 161/572 (28%), Positives = 263/572 (45%), Gaps = 35/572 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG   + +  ++   ++    GL  +     +V  +    +Y G++ S L    
Sbjct: 1   MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +    P+YA + AR  +  L +  + +  +  +    H             I +
Sbjct: 61  AETAAAMTASHPDYASLAARIAISNLHKTTMKSFSETIKVMYMH--YDERSGLLAPLIAD 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
            V   ++       +   L +++ Y+RDF ++Y G + L   Y L + G  +E PQ   M
Sbjct: 119 DVYEIIM------KNTTRLDSEIIYDRDFDYDYFGFKTLERSYLLKVVGKVVERPQHMLM 172

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381
           RV++G+     +  + A++ Y+++S   F  ++PTLFN+GT  PQLSSCFL  + DD + 
Sbjct: 173 RVSIGIH---KDDIESAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           GI+  L E A ++K +GG+G     +R  G++I GTNG S G++P L+V NDTA  V+QG
Sbjct: 230 GIYDTLSECATISKCAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289

Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           G KRKGA   YLE WH D+ EFLDLRKN G +  R  D+  A WIPDLFM+RV  N  W+
Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNENWS 349

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LF P+E   L D +G EF+  Y+ YER     E K  + +SA ALW  +L    ETG P+
Sbjct: 350 LFCPNEAPGLADCWGDEFQNLYKKYER-----EGKAKKVVSAQALWFDILKAQIETGTPY 404

Query: 561 ITFK----DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616
           + +K    +     +   H     +     E    + S       +   ++     ++++
Sbjct: 405 MLYKAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVPSDRW 464

Query: 617 DYDKLASTI-RTAVRVLDNVIDIN----------CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           ++  L   I +  VR    +  +               E    + ++ R +    +    
Sbjct: 465 NWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 524

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            L            V       E  S   IS 
Sbjct: 525 HLLHDLTEMGIWSPVLKNKIVYEDGSVQKISE 556



 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 150/284 (52%), Gaps = 11/284 (3%)

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
             PY   +A ++  +  E I +HA+ AS E+A + G Y ++ GS   +G+   D   ++ 
Sbjct: 401 GTPYMLYKAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP 460

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             R            W +L++ +  +G+RNS  +A  PTA+ + I G ++  +P   N+Y
Sbjct: 461 SDR----------WNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 510

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +  +SG+F VVN  L+++L +  +W   + + + Y DGS+  I  IPDDLK I+ T +E
Sbjct: 511 SRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWE 570

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909
           I    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLR+R+A 
Sbjct: 571 IKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAA 630

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
              K T+     K       + +  +    +  S  +  EC  C
Sbjct: 631 DAIKFTVDTTLLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 674


>gi|306836785|ref|ZP_07469745.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           accolens ATCC 49726]
 gi|304567331|gb|EFM42936.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           accolens ATCC 49726]
          Length = 720

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 175/742 (23%), Positives = 305/742 (41%), Gaps = 72/742 (9%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH-----EMQCLY 252
           + T L  +    + +E          +L     +      K  + A            +Y
Sbjct: 1   MSTQLGKTVAEPVSQEEQLDYHALNAMLNLYDGDGKIQFDKDREAANQFFLQHVNQNTVY 60

Query: 253 PEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYF----L 307
                  I+  V+ +    ++++ +D  ++ +  K    + F +      Y  Y      
Sbjct: 61  FHDLEEKIDYLVRNKYYDPAVIEAYDFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLK 120

Query: 308 HINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             +G R  E  +    RV+M          + A    + + +  F  +TPT  N+G +  
Sbjct: 121 TFDGRRYLERFED---RVSMTALFLGDGDGELAERLVDEIMTGRFQPATPTFLNAGKQQR 177

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVI
Sbjct: 178 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVI 237

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 238 PVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVI 297

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAV 543
           PD+  +    N    LFSP    D+  +YGK F      E+YE   +   I+  +KI+A 
Sbjct: 298 PDITFELAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINAR 353

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------- 596
             ++ +  + FE+G+P+I ++D  N R+       ++ SNLC+EI   +S  E       
Sbjct: 354 HFFQTVAELQFESGYPYIMYEDTVN-RANPVKTSRINMSNLCSEILQVNSPSELNADLSY 412

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
             V N  S NL +       D    + T+ TA+R L +V D  +  ++   +K N    A
Sbjct: 413 DQVGNDISCNLGSLNIAMTMDSPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHA 472

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L   HI Y S E ++  +     I + A+ AS ++A+ER   ++ F  S
Sbjct: 473 IGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPES 532

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F     P +      +V+     +     +   W ELK+ V   G+ N N  A+
Sbjct: 533 DYASGEFFDSYDPAEFQPRTEKVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAV 592

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G      + + N+                
Sbjct: 593 PPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAAHMDND---------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            +    ++EI    ++++ +   K++DQ  SL L+  +  + + 
Sbjct: 637 ---------------NLEYFKDSYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRD 681

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           ++     AW  G+KT YY+R R
Sbjct: 682 VNKAQIYAWRKGIKTLYYIRVR 703


>gi|302595802|sp|P0CG99|RIR1A_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 1;
           AltName: Full=Ribonucleotide reductase R1 subunit 1
 gi|302595803|sp|P0CH00|RIR1B_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 2;
           AltName: Full=Ribonucleotide reductase R1 subunit 2
          Length = 722

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     IE     R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 68  DEKLDYLIENEYYEREVLDQYSRDFIKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 127

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +    + A +  + +    F  +TPT  NSG +   +  
Sbjct: 128 KRYLERFEDRVVMVALTLAAGD---TELAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPV 184

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 185 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMK 244

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 304

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I+A   ++ 
Sbjct: 305 FELAKKNEDMYLFSP---YDVERVYGVPFADVSVTEKYYEMVDDARIRKTKINAREFFQT 361

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I F+D  N        G +  SNLC+EI   S+  E            
Sbjct: 362 LAELQFESGYPYIMFEDTVNR--SNPIAGKITHSNLCSEILQVSTPSEFNDDLSYAKVGK 419

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 420 DISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 474

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS ++A ERG  +  F+ S
Sbjct: 475 IGLGQMNLHGYLARERIYYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGTHFKGFEKS 534

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  ++  ++  W +LK+ V+  G+ N N  A+
Sbjct: 535 KYASGEFFDKYTDQVWEPKTDKVRRLFADADIHIPTQDDWKQLKESVQKHGIYNQNLQAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 595 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYMTND---------------- 638

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                              +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 639 ---------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 683

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 684 VNKAQIYAWRKGIKTLYYIR 703


>gi|296140661|ref|YP_003647904.1| ribonucleoside-diphosphate reductase, subunit alpha [Tsukamurella
           paurometabola DSM 20162]
 gi|296028795|gb|ADG79565.1| ribonucleoside-diphosphate reductase, alpha subunit [Tsukamurella
           paurometabola DSM 20162]
          Length = 727

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 171/742 (23%), Positives = 296/742 (39%), Gaps = 89/742 (11%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAK----VTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            S+L+   + +   L +++ N         AR    +   +     +   +K  +     
Sbjct: 24  HSELDFHALNAMLNLYDRDGNIQFDKDREAARQYFLQHVNQNTVFFHNLDEKLDY----- 78

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
                    +EE      + +      +  L +    ++     +LG    Y  Y L   
Sbjct: 79  --------LVEENYYEPEVLDKYSRAFVKNLFDAAYAKKFRFPTFLGAFKYYTSYTLKTF 130

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +G R  E  +    RV M         EK A    + + +  F  +TPT  NSG +   +
Sbjct: 131 DGKRYLERFED---RVCMVALTLADGDEKLATSLVDEIIAGRFQPATPTFLNSGKKQRGE 187

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 188 PVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPI 247

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 248 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPD 307

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
           +  +    N    LFSP    D+  +YG  F       +      + ++ +  I+A   +
Sbjct: 308 ITFELAKNNDDMYLFSP---YDVERVYGVPFADVNVTEKYHEMVDDSRIRKTKINAREFF 364

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594
           + +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI               +  
Sbjct: 365 QTLAELQFESGYPYIMYEDTVNRANPI--AGKITHSNLCSEILQVSTPSTYNDDLSYAEI 422

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTH 653
            +   CNLGS+N+         D     +TI TA+R L  V D     ++   +  N+  
Sbjct: 423 GKDISCNLGSLNIAKT-----MDSPDFGATIETAIRGLTAVSDQTAITSVPSIEHGNNLS 477

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712
            AIGLG M     L    + Y S E V+  +     + FHAI AS  +A+ER  ++  F+
Sbjct: 478 HAIGLGQMNLHGYLARERVFYGSEEGVDFTNIYFYTVLFHAIRASNAIARERGQSFGGFE 537

Query: 713 GSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            S +  G F    I    +           +  +   ++  W  LK  V+  G+ N N  
Sbjct: 538 DSKYASGEFFDKYIDQEWKPATDKVIGLFADSEIRIPTQDDWRALKADVQQYGLYNQNLQ 597

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823
           A+ PT +I+ I   + SI P    + ++     G       ++ N+              
Sbjct: 598 AVPPTGSISYINHSTSSIHPVAAKIEIRKEGKIGRVYYPAPYMDND-------------- 643

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
                              + +  A+EI    +I++ +   + +DQ  SL L+  +  + 
Sbjct: 644 -----------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATT 686

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           + ++     AW  G+KT YY+R
Sbjct: 687 RDVNRAQIYAWRKGIKTLYYIR 708


>gi|254420375|ref|ZP_05034099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brevundimonas sp. BAL3]
 gi|196186552|gb|EDX81528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brevundimonas sp. BAL3]
          Length = 753

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 160/646 (24%), Positives = 249/646 (38%), Gaps = 82/646 (12%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
              F    G+     +A + RVA  LA  E    + +    F   L ++ F+ +   L  
Sbjct: 15  KYRFRPHEGTGDATVEATWDRVAAALAEAEPTKTRARWRARFRETLDAYRFLPAGRILAG 74

Query: 361 SGTRHP-QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  V PDDL GIF  L+E A+  +  GG+G D++ VR  GA + G  
Sbjct: 75  AGTGRAVTLFNCFVMGVVPDDLDGIFQHLREAAVTLQQGGGVGMDFSTVRPSGALVRGVG 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            ++ G + F+ V +     +   G+R+GA+   L   H D+E F+D ++    D  R  +
Sbjct: 135 AEASGPLSFMDVWDSMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR----DAVRFRN 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  +PD FM  +  +A W L                               + ++ R
Sbjct: 191 FNLSVLVPDAFMAALDADADWPLVF-----------------------------DGEIRR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   H  V+ +SN C E  L        
Sbjct: 222 TVRATDLWTRLMQATYDAAEPGVIFIDRVNAANNLAHCEVIAASNPCGEQMLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL    +         D  KLA   RTAVR+LDNVIDI+   +   +      
Sbjct: 278 ACLLGSINLARLVSAPFEPDAALDEQKLADLTRTAVRMLDNVIDISRFPLPAQEAEARAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG+ G   AL      Y    AV +    +  I   A  AS ELA E+GA+  +  
Sbjct: 338 RRLGLGVTGLADALIFCGARYGEDRAVALTGRWLGLIRREAYRASAELAAEKGAFPLY-- 395

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                                 L     + L  +  ++ +   G+RN    +IAPT T +
Sbjct: 396 ------------------DPAMLQRPNLASLDAET-RELIGLHGLRNGCLTSIAPTGTTS 436

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            + G  S  I+P +   Y +  M  D T     + +      LW        K   G   
Sbjct: 437 LLAGNVSSGIEPVFAFAYTRKVMQPDGTRREEAVED--YALALW--------KTLKGPDA 486

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            ++  P D      +A  + P   +   +  Q  ID + S  +   E    +    +YRQ
Sbjct: 487 PLDSAPGD---AFVSAQTLTPEHHLRMQAAAQAQIDSSISKTINCPENIDFEAFSDVYRQ 543

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            + MG K     R  + T    S          A        +   
Sbjct: 544 GYRMGCKGLTTYRPNAITGSVLSVESPASVPAAAPSSDVDPLTPRP 589


>gi|94985874|ref|YP_605238.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           geothermalis DSM 11300]
 gi|94556155|gb|ABF46069.1| Ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           geothermalis DSM 11300]
          Length = 649

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 161/679 (23%), Positives = 274/679 (40%), Gaps = 63/679 (9%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMP 317
           +E G     +       ++  + N     R     ++G Q  Y  Y          +E  
Sbjct: 2   VERGFWDGEMLARYRPEEVKAVFNRAYSHRFRFQSFMGAQKFYAEYATKTPDGSRYLERY 61

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT-T 375
           +    R++M    +     + A+   + L    F+ +TPTL NSG  +  +L+SCFL   
Sbjct: 62  ED---RMSMVALARAGGNAELALTLVDHLVRQTFVPATPTLMNSGKANTGRLTSCFLLQD 118

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I       A L+K  GG+G D + +R  G  +    G ++G     K+ +   
Sbjct: 119 CTDSLDSIMKTQHFAADLSKNGGGVGIDLSNLRARGESLRHLQGVTKGAAAVAKLFDVLF 178

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +Q G+R+GA    L   H D +E L  +K   D+  R   ++    IPD+FM+ V  
Sbjct: 179 RYADQAGQRQGAAVVNLNVMHPDFQELLAGKKIATDEDARLKTLSICAVIPDVFMQAVRD 238

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLF 554
           +       P          G+ F     + E            R++SA  L +++     
Sbjct: 239 DKDVYQVYPR---SYEQATGRIFTDIDWDTEYASIVENPNIRKRRVSARQLLQEIALTQG 295

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------NLGSI 605
           E+G+P++ F    N  +P  +VG V  +NLC+EI   +                    S 
Sbjct: 296 ESGYPYLLFTGNANRANPVPNVGTVKMTNLCSEIMQPTLPSSFHPYGEEARDEIGLDVSC 355

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL +    N      L   +R A+ +LD+V    N   +    ++N   R+IGLG MG  
Sbjct: 356 NLASLHIGNALKSGDLGGVVRAAISMLDDVAQSTNITEVPAVARANREMRSIGLGAMGLH 415

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-- 721
             L    I Y SPEA+   D   E + FHA  AS+ELA++ G  ++ F+GS +  G +  
Sbjct: 416 GHLAEHGIAYGSPEALAFCDLFFEAVHFHARRASMELARDTGFVFAGFQGSRYQSGEYFA 475

Query: 722 PIDSIGLLAEVRDELAMNRT-------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           P               +          +R  W +L   ++  G+ +S+ MAIAPT +I+ 
Sbjct: 476 PYTEREREPAQDLAPEVRAALQGAWLPTREDWRQLVSDIQRYGLAHSHVMAIAPTGSISY 535

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           +   + S+ P  + +  +++  G                                    +
Sbjct: 536 VANATASVMPITERVETRTSGKGKTIYP-------------------------------M 564

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
             + +  +  +  A+++D   +I++ +  Q+ +DQ  S  L++    +   L  +Y  A+
Sbjct: 565 PGLNEQTEWFYEEAYDMDMRRVIDTVATIQRHVDQGISCTLFVRSNVTTADLARLYISAY 624

Query: 894 LMGLKTTYYLRSRSATSVE 912
             GLK+ YYLR R AT  E
Sbjct: 625 RKGLKSLYYLRQRRATVQE 643


>gi|159184147|ref|NP_353104.2| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           tumefaciens str. C58]
 gi|159139482|gb|AAK85889.2| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           tumefaciens str. C58]
          Length = 693

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 176/713 (24%), Positives = 293/713 (41%), Gaps = 79/713 (11%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +   +  Y            +  +L +   +F
Sbjct: 16  DRLAARQYFLQHVNQNTVFFHNLREKLDYLVTEGYY------------EQEVLDQYSFNF 63

Query: 277 DLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKET 333
                     Y R F F  +LG    Y  Y L   +G R  E  +    RV M       
Sbjct: 64  VRDLYDEA--YSRKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALALAR 118

Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAM 392
             E+ A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++     
Sbjct: 119 GDEQLARDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSALQ 178

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL
Sbjct: 179 LSKRGGGVALSLTNIREFGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 238

Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH- 511
              H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ 
Sbjct: 239 HAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYG 298

Query: 512 -DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             L        Y      +   +    +KI A   ++ +  + FE+G+P+I F+D  N  
Sbjct: 299 VPLTEISVTEKYHEMVADSRIRK----KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRA 354

Query: 571 SPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
           +P    G +  SNLC+EI         N+    + +    S NL +    +  D      
Sbjct: 355 NPV--AGRISMSNLCSEILQVSEASEFNADLSYSHMGKDISCNLGSLNIASAMDSADFGK 412

Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           TI T++R L  V D+ +  ++   +K N    AIGLG M     L    I Y S E ++ 
Sbjct: 413 TIETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEEGIDF 472

Query: 683 ADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL 736
            +     +++HAI AS  LA ER  ++  F+ S +  G +       + +    +VRD  
Sbjct: 473 TNIYFYTVTYHAIRASNRLAVERGQSFKGFENSKYASGDYFDKYTDREWLPATEKVRDLF 532

Query: 737 AMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                +   +  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P    + ++ 
Sbjct: 533 EKAGIAIPTQEDWTALKQDVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK 592

Query: 794 NMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G      S+L N+                                 + +  A+EI 
Sbjct: 593 EGKIGRVYYPASYLSND-------------------------------NLEYYQDAYEIG 621

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 622 PEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRRGIKTIYYIR 674


>gi|222081802|ref|YP_002541167.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           radiobacter K84]
 gi|221726481|gb|ACM29570.1| ribonucleoside-diphosphate reductase, alpha subunit [Agrobacterium
           radiobacter K84]
          Length = 717

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 179/739 (24%), Positives = 308/739 (41%), Gaps = 81/739 (10%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           +E+ L+   + +   L +++     +  ++ A+    +   +     +   +K  +   +
Sbjct: 13  TETQLDYHALNAMLNLYDEDGKIQLDRDRLAAKQYFLQHVNQNTVFFHHLREKLDYLVTE 72

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
             Y            +  +L +   +F      +   Y + F F  +LG    Y  Y L 
Sbjct: 73  GYY------------EREVLDQYSFNFVRDLFDHA--YAKKFRFPTFLGAFKYYTSYTLK 118

Query: 309 -INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             +G R  E  +     VA+ LA      E  A +  + + S  F  +TPT  N+G +  
Sbjct: 119 TFDGKRYLERYEDRICMVALTLAQG---NESLARDMVDEIISGRFQPATPTFLNAGKKQR 175

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+I
Sbjct: 176 GELVSCFLMRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKHIENQSSGII 235

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +
Sbjct: 236 PVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVV 295

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           PD+  +    N    LFSP +V  ++            Y          +    +KI A 
Sbjct: 296 PDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADNHIRK----KKIKAR 351

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSEETAV 599
             ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI       +  ++ + 
Sbjct: 352 DFFQVIAEIQFESGYPYIMFEDTVNRANPI--AGRITMSNLCSEILQVSEASTYRDDLSY 409

Query: 600 CNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
            ++G   S NL +       D D    TI TA+R L  V D+    ++   +K N    A
Sbjct: 410 EHMGKDISCNLGSLNIAAAMDSDNFGKTIETAIRALTAVSDMSRISSVPSIEKGNDESHA 469

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S E V+  +     +++HAI AS  LA ER  ++  F+ S
Sbjct: 470 IGLGQMNLHGYLARERILYGSEEGVDFTNIYFYTVTYHAIRASNRLAAERERSFKGFENS 529

Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +         +          +   ++  +R  W ELK+ V T G+ N N  A+
Sbjct: 530 KYASGDYFDKYTEQEWKPATERVRTLFETAGIDIPTREDWQELKQAVMTSGLYNQNLQAV 589

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT +I+ I   + SI P    + ++                         E MI  + Y
Sbjct: 590 PPTGSISYINHSTSSIHPIVSKIEIRK------------------------EGMIGRVYY 625

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                     + +D    +  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 626 ------PAAFMTNDNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 679

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 680 NKAQIYAWKKGIKTIYYIR 698


>gi|296270389|ref|YP_003653021.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobispora bispora DSM 43833]
 gi|296093176|gb|ADG89128.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermobispora bispora DSM 43833]
          Length = 938

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 129/642 (20%), Positives = 234/642 (36%), Gaps = 66/642 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385
           G    E + E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 116 GYFATEEDAEIFDHELKYALIHQIFSFNSPVWFNVGTASPQQVSACFILSVDDTMESILE 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 176 WYKEEGLIFKGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+ EF++ +       R                   +  + N +  +
Sbjct: 235 RAAKMVVLDVDHPDIVEFIESKAREEQKIRVLRDAGFDMDLGGRDIVSVQYQNANNSVRV 294

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V     + L +                               +V  ++ A  L
Sbjct: 295 SDEFMRAVENGGKFGLRARLT---------------------------GEVIEEVDAREL 327

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +RKM    +E G P I + D  N        G + +SN C+E        + + CNL SI
Sbjct: 328 FRKMAQAAWECGDPGIQYDDTINDWHTCPESGRITASNPCSEYVH----LDNSSCNLASI 383

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+     ++ FD +     +   +  +D  I       +K  ++    R +G+G     
Sbjct: 384 NLMKFLRDDDTFDVESFTKMVELIITAMDISITFADFPTQKIAETTRAFRQLGIGYANLG 443

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L      Y S     +A      ++  A   S ELA+  G Y  ++ +          
Sbjct: 444 ALLMATGHAYDSDGGRALAAAITSLMTAVAYRRSAELAEVVGPYQGYQRNAEPHKRVIRK 503

Query: 725 SIGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
            +    ++R   AM+      +   WD   K  +  G RN+    +APT TI  +    +
Sbjct: 504 HVAANTQLRTYEAMDSAIHAEATRQWDRCVKLGEKHGYRNAQVSLLAPTGTIGLMMDCDT 563

Query: 780 QSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836
             I+P    + +K     G   +VN  +   L++    DE + + ++Y    G + +   
Sbjct: 564 TGIEPDLALVKIKKLVGGGSMKIVNQTVPRALRKLGYQDEQIEAIVEYISEHGHVVDAPG 623

Query: 837 IPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +  +   +   A     I PM  +   +  Q ++  A S  + L E  + + ++ +Y   
Sbjct: 624 LKPEHYAVFDCAMGERAIAPMGHVRMMAAVQPFLSGAISKTVNLPESATVEDIEQVYMAG 683

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           W +GLK     R         S  K        V + +    
Sbjct: 684 WKLGLKALAVYRDNCKVGQPLSAAKKQPESKPEVQIVEVPRP 725


>gi|283835590|ref|ZP_06355331.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291068802|gb|EFE06911.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 705

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 181/708 (25%), Positives = 300/708 (42%), Gaps = 64/708 (9%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  + V        +  +         E     + EG     +        ++
Sbjct: 20  AGRIQFDKDHQAVDAFFAAHVRPNSV--TFASQQERLEVLVSEGYYDESVLSRYDRTFVI 77

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337
            L             +LG    Y  Y L   +G R  E  +     VA+ LA  +   E 
Sbjct: 78  TLFARAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVTMVALTLAQGD---ET 134

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A++  + + S  F  +TPT  N G R   +L SCFL  + D++  I  A+     L+K 
Sbjct: 135 LAMQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKR 194

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H
Sbjct: 195 GGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHH 254

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    D+  LYGK
Sbjct: 255 PDILRFLDTKRENADEKIRIKTLSLGVVIPDVAFRLAKENAQMALFSP---YDVERLYGK 311

Query: 517 EF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            F +IA      +    E    + I+A   ++++  + FE+G+P+I F+D  N  +P   
Sbjct: 312 PFGDIAVSERYDELLADERVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNRANPI-- 369

Query: 576 VGVVHSSNLCTEITLNSSSEETA-------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            G ++ SNLC+EI   +S+           + +  S NL +    +  D      T+ TA
Sbjct: 370 AGRINMSNLCSEILQVNSASTYDDALGYTQIGHDISCNLGSLNIAHTMDSPDFGRTVETA 429

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           VR L  V D+ + H++   +  N    AIGLG M     L    I Y SPE ++  +   
Sbjct: 430 VRGLTAVSDMSHIHSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYF 489

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---M 738
             I++HA++ S++LA+ER   ++ F  S +  G +       D     A+VR   A   +
Sbjct: 490 YTITWHALNTSMKLARERGKTFAGFSQSRYASGEYFSQYLQGDWQPKTAKVRALFAASGI 549

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797
              +R  W +L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G
Sbjct: 550 TLPTREMWAQLREDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKIG 609

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  F+ N                               +   ++  A+EI P  +I
Sbjct: 610 RVYYPAPFMTN-------------------------------ENLALYQDAYEIGPQKII 638

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++ +   + +DQ  SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 639 DTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 686


>gi|118464322|ref|YP_883081.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium 104]
 gi|118165609|gb|ABK66506.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           avium 104]
          Length = 705

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 173/728 (23%), Positives = 295/728 (40%), Gaps = 79/728 (10%)

Query: 212 KEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGV 264
            E +Y  + A   L       +  ++VL       Q    + +      E     I E  
Sbjct: 3   DETDYHALNAMLNLYDADGKIQFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENY 62

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFM 322
             R + +      +  L +    ++     +LG    Y  Y L   +G R  E  +   +
Sbjct: 63  YEREVLDQYSRNFVKALLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVV 122

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381
            VA+ LA  +      A +  + +    F  +TPT  NSG +   +  SCFL  + D++ 
Sbjct: 123 MVALTLAAGD---TGLAEKLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNME 179

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ 
Sbjct: 180 SIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQL 239

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    L
Sbjct: 240 GARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYL 299

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPW 560
           FSP    D+  +YG  F       +      + ++ +  I A   ++ +  + FE+G+P+
Sbjct: 300 FSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPY 356

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +P    G +  SNLC+EI               +   +   CNLGS+N+ 
Sbjct: 357 IMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA 414

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A TI  A+R L  V D  +  ++   ++ N+   AIGLG M     L
Sbjct: 415 KT-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYL 469

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S +  G F     
Sbjct: 470 AREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYT 529

Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
             + E           +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   
Sbjct: 530 EQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHS 589

Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++     G       ++ N+                            
Sbjct: 590 TSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896
                + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     AW  G
Sbjct: 622 ---NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKG 678

Query: 897 LKTTYYLR 904
           +KT YY+R
Sbjct: 679 IKTLYYIR 686


>gi|269217730|ref|ZP_06161584.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269212665|gb|EEZ79005.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 712

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 178/752 (23%), Positives = 309/752 (41%), Gaps = 89/752 (11%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
           +D +          N+YD              +  LI+ + +  +  AR    +   +  
Sbjct: 10  EDPNLDYHALNAKLNLYD--------------ANGLIQFDAD--RAAARQYFLQHVNKNT 53

Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293
              +   +K  +              ++EG   + + +      +  L      ++    
Sbjct: 54  VYFHDLEEKMEY-------------LVKEGYYEKEVLDQYPFDFVKSLYKAAYAKKFRFP 100

Query: 294 EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            +LG    Y  Y L   +G+R  E  +     VA+ LA  + +     +E    + S  F
Sbjct: 101 TFLGAFKYYTSYTLKTFDGTRYLERYEDRVCMVALTLARGDQDLAVDLME---EIISGRF 157

Query: 352 MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N+G     +L SCFL  + D++  I   +     L+K  GG+  + + +R L
Sbjct: 158 QPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALNLSNLREL 217

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GV P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   
Sbjct: 218 GAPIKRIQNQSSGVNPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENA 277

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D++ R   ++    IPD+  +    N    LFSP    D+  +YG  F     + + +  
Sbjct: 278 DEKIRIKTLSLGVVIPDVTFELAKNNEDMYLFSP---YDVERVYGVPFTEISVSEKYREM 334

Query: 531 RGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
             + ++ + KI+A A ++ +  + FE+G+P+I F+D  N  +P    G V  SNLC+EI 
Sbjct: 335 VDDKRIRKSKINARAFFQTLSEIQFESGYPYIVFEDTVNAANPI--KGKVTMSNLCSEIL 392

Query: 590 L-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
                   N       V    S NL +       D   L  T+ TAVR L  V D+ +  
Sbjct: 393 QVSEASEYNPDLSYAHVGKDISCNLGSMNIAKAMDSPDLGKTVETAVRALTAVSDMTDIR 452

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
           ++   ++ N    +IGLG M     L    + Y S E ++  +     + FHAI AS+E+
Sbjct: 453 SVPSIERGNAMSHSIGLGQMNLHGYLGRERVFYGSEEGLDFTNMYFYTVLFHAIRASMEI 512

Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVK 754
           A+ER   ++ F+ S +  G F    +    E            ++  +   W  L++ V+
Sbjct: 513 ARERGERFAGFEDSTYATGEFFDKYVEGAWEPTTPKVRELFANVHIPTSEDWAALREDVR 572

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQR 813
             GM N N  A+ PT +I+ I   + SI P    + ++     G       ++ N+    
Sbjct: 573 RYGMYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPYMTND---- 628

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                        + +  A+EI P  +I++ +   + +DQ  SL
Sbjct: 629 ---------------------------NLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSL 661

Query: 874 NLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            L+  +  + + ++  Y  AW  G+KT YY+R
Sbjct: 662 TLFYPDTVTTRDVNRNYIYAWRKGIKTLYYMR 693


>gi|326803226|ref|YP_004321044.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650452|gb|AEA00635.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 732

 Score =  317 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 180/787 (22%), Positives = 323/787 (41%), Gaps = 83/787 (10%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++    E  L  ++ T  + +       A     +  +E +    +   +A       L 
Sbjct: 1   MTFKQEENYLSLNALTRFKDQ-------AGHYNFQADKEAVAVYMRDYIQAKTKTFANLD 53

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY-LGLQILYDRYFLHING 311
            +      E     + + +      +  +      ++DFAF   +G    Y  Y L  + 
Sbjct: 54  SK-LDYLFENNYYEKEVFDQYSKDFIHEIYQWAD-DQDFAFPNLIGAMKFYSAYALKTDD 111

Query: 312 SRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
                E  +    RV           +  A +    + S  F  +TPT  N+  +   + 
Sbjct: 112 KAYYLETYED---RVIANALFLANGDQDLAKDLAADILSNRFQPATPTFLNAAKKRRGEY 168

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SC+L  V D++  I  ++  +  L+K  GG+    T +R   A I G   ++ GV+P +
Sbjct: 169 ISCYLLRVEDNMESIARSIATSLQLSKRGGGVALCLTNLRETTAPIKGMANQASGVVPVM 228

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G+R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+
Sbjct: 229 KLLEDSFSYANQLGQRQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLSLGVVIPDI 288

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
             +   +N    LFSP ++  ++     +  I  +  E  A+    K F  ISA  L++ 
Sbjct: 289 TFQLAKENKDMALFSPYDIKKVYGKAMSDISITEKYDELLANPAIHKDF--ISARKLFQV 346

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P++ F+D  N R+P +  G +  SNLC+EIT  S+              E
Sbjct: 347 IAELHFESGYPYLMFEDTVNSRNPHKKKGRIVMSNLCSEITQVSTPSSFNEDLSFRTIGE 406

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGS+N+         D+  L S    A+  +    D+   +    KK N  + A+
Sbjct: 407 DICCNLGSLNIAKAMDQ-APDFGHLVSHAIQALDRISRKSDLE--SAPSIKKGNQANHAV 463

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG M     L   HI Y S EAV+  D     +++HA  +S  L ++ G ++ F  S +
Sbjct: 464 GLGAMNLHGFLATNHIYYDSEEAVDFTDMFFYALAYHAFKSSHALVKQHGPFAGFAESEY 523

Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G + +       + +         +  +   S+  W  L K ++  G+ N++ +A+AP
Sbjct: 524 ADGSYFMKYTESRVQPKTERVRQLLKDYGLQLPSQEDWQALAKAIQEDGIANAHLLAVAP 583

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T +I+ +   + S+ P    +  +         V ++                       
Sbjct: 584 TGSISYLSSCTPSLQPVVSPVETRKEGKLGRVYVPAY----------------------- 620

Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                  +I +D    +   A+E+ P  +I+  +  QK +DQA SL L++  E + + L+
Sbjct: 621 -------QIDNDNYAYYQRGAYEVGPQAIIDIVAAAQKHVDQAISLTLFMSSEATTRDLN 673

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             Y  A+  G  T YY+R R          + V      +   +  S+  +    SSC  
Sbjct: 674 RAYIYAYSKGCSTIYYVRVR----------QDVLAGSEHLESDELLSADPTSPDRSSCNG 723

Query: 947 DTECEVC 953
           ++ECE C
Sbjct: 724 NSECESC 730


>gi|227502984|ref|ZP_03933033.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|227076045|gb|EEI14008.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
          Length = 720

 Score =  317 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 175/742 (23%), Positives = 306/742 (41%), Gaps = 72/742 (9%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH-----EMQCLY 252
           + T L  +    + +E          +L     +      K  + A            +Y
Sbjct: 1   MSTQLGKTVAEPVSQEEQLDYHALNAMLNLYDGDGKIQFDKDREAANQFFLQHVNQNTVY 60

Query: 253 PEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYF----L 307
                  I+  V+ +    ++++ +D  ++ +  K    + F +      Y  Y      
Sbjct: 61  FHDLEEKIDYLVRNKYYDPAVIEAYDFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLK 120

Query: 308 HINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             +G R  E  +    RV+M          + A    + + +  F  +TPT  N+G +  
Sbjct: 121 TFDGRRYLERFED---RVSMTALFLGDGDGELAERLVDEIMTGRFQPATPTFLNAGKQQR 177

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVI
Sbjct: 178 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVI 237

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 238 PVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVI 297

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAV 543
           PD+  +    N    LFSP    D+  +YGK F      E+YE   +   I+  +KI+A 
Sbjct: 298 PDITFELAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINAR 353

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------- 596
             ++ +  + FE+G+P+I ++D  N R+       ++ SNLC+EI   +S+ E       
Sbjct: 354 HFFQTVAELQFESGYPYIMYEDTVN-RANPVKTSRINMSNLCSEILQVNSASELNADLSY 412

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
             V N  S NL +       D    + T+ TA+R L +V D  +  ++   +K N    A
Sbjct: 413 DQVGNDISCNLGSLNIAMTMDSPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHA 472

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L   HI Y S E ++  +     I + A+ AS ++A+ER   ++ F  S
Sbjct: 473 IGLGQMNLHGYLGREHIKYGSEEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPES 532

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F     P +      +V+     +     +   W ELK+ V   G+ N N  A+
Sbjct: 533 DYASGEFFDSYDPAEFQPRTEKVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAV 592

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G      + + N+                
Sbjct: 593 PPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAAHMDND---------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            +    ++EI    ++++ +   K++DQ  SL L+  +  + + 
Sbjct: 637 ---------------NLEYFKDSYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRD 681

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           ++     AW  G+KT YY+R R
Sbjct: 682 VNKAQIYAWRKGIKTLYYIRVR 703


>gi|156932795|ref|YP_001436711.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531049|gb|ABU75875.1| hypothetical protein ESA_00591 [Cronobacter sakazakii ATCC BAA-894]
          Length = 706

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 172/726 (23%), Positives = 291/726 (40%), Gaps = 69/726 (9%)

Query: 209 LIEKEPNYAKVTARFLLE----KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +++  P+Y  + A   L     +++ E           A        +P+   R      
Sbjct: 1   MLQTPPDYHALNAMLNLYDADGRIQFEKDREAVAAFMTAHVAPRSVTFPDTHARLAYLVS 60

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYL---GLQILYDRYFLH-INGSRIEMPQAF 320
           +       +  +D  ++A        + F +    G    Y  Y L   +G R    + F
Sbjct: 61  EGYYDENVLRRYDASFVAGLFDEAHRYGFTFKTFLGAWKFYTSYTLKTFDGKRY--LEHF 118

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379
             R  M         E  A +  + + S  F  +TPT  N G +   +L SCFL  + D+
Sbjct: 119 PDRACMVALTLACGDETLARQILDEILSGRFQPATPTFLNCGKKQRGELVSCFLLRIEDN 178

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     N
Sbjct: 179 MESIGRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYAN 238

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    NA  
Sbjct: 239 QLGARQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKANAQM 298

Query: 500 TLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            LFSP +V  ++            Y          E    R ISA  L++++  + FE+G
Sbjct: 299 ALFSPYDVERIYGKPFGDISVSEMYSQLVED----ERIRKRYISARELFQRLAEIQFESG 354

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAH 610
           +P+I F+D  N  +P    G ++ SNLC+EI   +S+             +  S NL + 
Sbjct: 355 YPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCNLGSL 412

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  D      T+  AVR L  V D+ +  ++   +  N    AIGLG M     L  
Sbjct: 413 NIAHTMDSPDFGRTVEVAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 472

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPE ++  +     +++HA++ S++LA+ER   +  F+ S +  G +    +  
Sbjct: 473 EGIAYGSPEGLDFTNLYFYTVTWHALNTSMKLARERGERFEGFEASRYASGEYFDKYLSQ 532

Query: 729 LAEVRDELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           +   R        +R          W  L+  V   G+ N N  A+ PT +I+ I   + 
Sbjct: 533 IWTPRTARVAELFARAGITLPTPEMWRALRDDVMRHGLYNRNLQAVPPTGSISYINHATS 592

Query: 781 SIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + ++     G       F+ N                               
Sbjct: 593 SIHPIVSKIEIRKEGKIGRVYYPAPFMTN------------------------------- 621

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           +   ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K
Sbjct: 622 ENLSLYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIK 681

Query: 899 TTYYLR 904
           T YY+R
Sbjct: 682 TLYYIR 687


>gi|227494220|ref|ZP_03924536.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM
           15436]
 gi|226831954|gb|EEH64337.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM
           15436]
          Length = 718

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 182/739 (24%), Positives = 304/739 (41%), Gaps = 87/739 (11%)

Query: 197 DLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           DL+   + +   L +KE     +  K  AR    +   +     +   +K  +   +  Y
Sbjct: 17  DLDYHALNAQLNLYDKEGKIQFDADKKAARQYFLQHVNQNTVFFHNLEEKLNYLVSEGYY 76

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH- 308
            E                  +  +D  ++ +  K  Y + F F  +LG    Y  Y L  
Sbjct: 77  EEEV----------------LDQYDFDFIKSLFKRAYAKKFRFPTFLGAFKYYTSYTLKT 120

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HP 366
            +G R  E  +    RV+M         ++ A    + + +  F  +TPT  N+G R   
Sbjct: 121 FDGKRYLERFED---RVSMVALYLARGNKEVAEYLVDEILAGRFQPATPTFLNAGKRARG 177

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  V D++  I   +     L+K  GG+    + +R  GA I     +S G++P
Sbjct: 178 ELVSCFLLRVEDNMESIARGINSALQLSKRGGGVALSLSNLREAGAPIKRIENQSSGIVP 237

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IP
Sbjct: 238 VMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKSLSLGVVIP 297

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVA 544
           D+  +    N    LFSP    D+  +YG  F      E Y    + G I+  +KI+A  
Sbjct: 298 DITFELAKNNEDMYLFSP---YDVERVYGVPFTEISVTEKYREMVEDGRIRK-KKINARR 353

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEET 597
            ++ +  + FE+G+P+I F+D  N        G +  SNLC+EI         N     +
Sbjct: 354 FFQTIAEIQFESGYPYIVFEDTVNR--ENPIKGRITMSNLCSEILQVSEASTYNEDLTFS 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAI 656
            V    S NL +       D    A T+ TA+R L  V D++  +     ++ N    AI
Sbjct: 412 HVGKDISCNLGSLNIAKAVDSPDFALTVETAIRGLTAVSDLSNISSAPSIERGNRMSHAI 471

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S EA++  +     +++ AI AS ++A+ER  ++  F+ S 
Sbjct: 472 GLGQMNLHGFLARERIFYGSEEALDFTNMYFYAVTYQAIKASTKIAKERGESFHGFEESK 531

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    I          + E+     +   +   W +L   V+  GM + N  AI 
Sbjct: 532 YYTGEYFTKYIEGEWVPTTDRVKEIFAGSTIYLPTPQDWKDLAAEVRENGMYHQNLQAIP 591

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N                  
Sbjct: 592 PTGSISYINYSTSSIHPIVSKIEIRKEGKIGRVYYPAPYMTN------------------ 633

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                        +  + +  A+EI P  +I++ +   + +DQ  SL L+  +  S + L
Sbjct: 634 -------------ENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVSTRDL 680

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +  Y  AW  G+KT YY+R
Sbjct: 681 NKSYIYAWRKGIKTMYYMR 699


>gi|254362524|ref|ZP_04978627.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica PHL213]
 gi|261494147|ref|ZP_05990650.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496012|ref|ZP_05992422.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153094124|gb|EDN75023.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica PHL213]
 gi|261308262|gb|EEY09555.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310313|gb|EEY11513.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 555

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 158/587 (26%), Positives = 255/587 (43%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 51  EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 110

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 111 IGGGTSAYFGDIRPRGSLIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 169

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 170 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 210

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 211 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 243

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 +H+SNLCTEI L SS+EE+ VC L S+NLL       FD  K      T    L
Sbjct: 244 KDKNMTIHASNLCTEIMLPSSNEESFVCCLSSMNLL------YFDEWKDTDAPETLTYFL 297

Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D V+        +   +++A +    HRA+GLG++G+ S L   +I + S +A++  +E 
Sbjct: 298 DVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNEI 357

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + +    + AS ELAQ  G     +G                                 
Sbjct: 358 FKTLQAKTLKASQELAQRFGEPEILEG--------------------------------- 384

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                     G RN+  M+IAPT + + I G VS S++P   N YVK          N F
Sbjct: 385 ---------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPF 435

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++ L  E + + +  +DGS+ ++E++ +  K++  T  EI  + +I+ A++RQK
Sbjct: 436 LEKLLQEKGLDTEEIWTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQK 495

Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 496 YIDQGQSINVMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 542


>gi|226305839|ref|YP_002765799.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           erythropolis PR4]
 gi|226184956|dbj|BAH33060.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           erythropolis PR4]
          Length = 727

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 173/680 (25%), Positives = 288/680 (42%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +EE      + +      + +L +    ++     +LG    Y  Y L   +G
Sbjct: 73  DEKLDYLVEENYYEPEVLDQYSRTFVKFLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 132

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA      E  AVE  + + +  F  +TPT  NSG +   +  
Sbjct: 133 KRYLERFEDRVCMVALTLAAG---NEDLAVELVDEIIAGRFQPATPTFLNSGKKQRGEPV 189

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T VR  GA I     +S GVIP +K
Sbjct: 190 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 249

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 250 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 309

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548
            +   +N    LFSP    D+  +YG  F     + +      + ++ + KI A   ++ 
Sbjct: 310 FELAKKNEDMYLFSP---YDVERIYGVPFSDINVSEKYYEMVDDKRIRKSKIKAREFFQT 366

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               S   +
Sbjct: 367 VAELQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYSKVGK 424

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D  + +++   ++ N+   A
Sbjct: 425 DISCNLGSLNIAKT-----MDSPDFAKTIEVSIRGLTAVSDQTHIYSVPSIEQGNNDSHA 479

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS ++A ERG+Y   F  S
Sbjct: 480 IGLGQMNLHGYLARERIFYGSVEGIDFTNIYFYTVLFHALRASNKIAIERGSYFKGFPES 539

Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E           +  ++  ++  W ELK  V+  G+ N N  A+
Sbjct: 540 KYASGEFFDKYTDQVWEPATDKVRGLFADAKLHIPTQDDWRELKASVQKHGIYNQNLQAV 599

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N+                
Sbjct: 600 PPTGSISYINYSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 643

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    ++++ +   + +DQ  SL L+  +  + + 
Sbjct: 644 ---------------NLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRD 688

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 689 INKAQIYAWRKGIKTLYYIR 708


>gi|302525528|ref|ZP_07277870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. AA4]
 gi|302434423|gb|EFL06239.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. AA4]
          Length = 938

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 128/622 (20%), Positives = 226/622 (36%), Gaps = 28/622 (4%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I    +E  ++ 
Sbjct: 122 EIFEHELTWMLLHQVFSFNSPVWFNVGTSSKQQVSACFILAVDDTMESILNWYREEGLIF 181

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 182 KGGSGAGLNLSRIRSSKELLTS-GGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 240

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+EEF+  +    +  +   D      +    +  V         + +    + D 
Sbjct: 241 VDHPDIEEFIQTKAREEEKIKVLRDAGFDMDLSGSDISSVQ------YQNANNSVRVSDE 294

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +    E   +   R    GE  V  +  A  L+R M    +E   P + +    N     
Sbjct: 295 FMHAVENGTDFGLRARLTGE--VIDRTDAKKLFRSMAQAAWECADPGVQYDSTINDWHTC 352

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVL 632
              G + +SN C+E        + + CNL S+NLL   +++  FD    A  +   +  +
Sbjct: 353 PESGRITASNPCSEYMH----LDNSSCNLASLNLLKFVSDDGTFDAPLFAKAVEFVITAM 408

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           D  I       E    +    R +G+G     + L  L   Y S     +A      ++ 
Sbjct: 409 DISICFADFPTEPIADTTRKFRQLGIGYANLGALLMALGHAYDSEGGRALAAAITSLMTG 468

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL----AMNRTSRLPWDE 748
            +   S ELA   G Y  +  +                 VR       A+   +   W +
Sbjct: 469 VSYRRSAELAGVVGPYEGYARNAEAHQRVMRKHAAANELVRTYHSNDAAVRALASEEWQK 528

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFL 806
             +     G RN+    +APT TI  +    +  I+P +  + + K    G   +VN  +
Sbjct: 529 GIELGTRNGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTV 588

Query: 807 VNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA---FEIDPMWLIESAS 861
              LK      E + + ++Y    G + +   +  +  ++   A     I PM  +   +
Sbjct: 589 PRALKVLGYQAEQVEAIVEYVAQHGHVVDAPGLRPEHYEVFDCAVGDRSIAPMGHVRMMA 648

Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             Q +I  A S  + + E  + + ++ IY Q W +GLK     R         ST K  +
Sbjct: 649 AVQPFISGAISKTVNMPESATVEDVEEIYFQGWKLGLKALAIYRDNCKVGQPLSTAKKKE 708

Query: 921 GKLNAVPVTDPNSSTHSLGIPS 942
               A P            +P 
Sbjct: 709 AVAEAEPEKVVEYRPVRRRLPK 730


>gi|53728875|ref|ZP_00348265.1| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207636|ref|YP_001052861.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae L20]
 gi|165975604|ref|YP_001651197.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251972|ref|ZP_07338143.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247134|ref|ZP_07529186.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307256173|ref|ZP_07537960.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307260606|ref|ZP_07542298.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126096428|gb|ABN73256.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875705|gb|ABY68753.1| ribonucleoside-diphosphate reductase alpha subunit 1
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|302649402|gb|EFL79587.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856383|gb|EFM88534.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306865354|gb|EFM97250.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306869683|gb|EFN01468.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 554

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/581 (26%), Positives = 251/581 (43%), Gaps = 94/581 (16%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSVIRN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L SSS+E+ VC L S+NLL        D  ++ +     V   
Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                 +   +E+A +    HRA+GLG++G+ S L   +I + S +A++  +   + +  
Sbjct: 303 FIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNLIFKTLQE 362

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             + AS ELA+  G     KG                                       
Sbjct: 363 KTLKASQELAKRFGEPELLKG--------------------------------------- 383

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  M+IAPT + + I G VS S++P   N YVK          N FL   L+
Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQ 440

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A++RQK+IDQ Q
Sbjct: 441 EKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 500

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           S+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 501 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|254776338|ref|ZP_05217854.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 693

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 169/707 (23%), Positives = 289/707 (40%), Gaps = 73/707 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           +  ++VL       Q    + +      E     I E    R + +      +  L +  
Sbjct: 12  QFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENYYEREVLDQYSRNFVKALLDRA 71

Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     +LG    Y  Y L   +G R  E  +   + VA+ LA  +      A +  
Sbjct: 72  YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGD---TGLAEKLV 128

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 129 DEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 188

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 189 LLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 248

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F    
Sbjct: 249 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGLPFADIS 305

Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              +      + ++ +  I A   ++ +  + FE+G+P+I F+D  N  +P    G +  
Sbjct: 306 VTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--DGKITH 363

Query: 582 SNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI               +   +   CNLGS+N+         D    A TI  A+
Sbjct: 364 SNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIAKT-----MDSPDFAQTIEVAI 418

Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +    
Sbjct: 419 RALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIYFY 478

Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMN 739
            + +HA+ AS  +A ERG  +  F+ S +  G F       + E           +  + 
Sbjct: 479 TVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAGIR 538

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GD 798
             ++  W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + ++     G 
Sbjct: 539 IPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEGKIGR 598

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 ++ N+                                 + +  A+EI    +I+
Sbjct: 599 VYYPAPYMTND-------------------------------NLEYYQDAYEIGYEKIID 627

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 628 TYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674


>gi|119718033|ref|YP_924998.1| vitamin B12-dependent ribonucleotide reductase [Nocardioides sp.
           JS614]
 gi|119538694|gb|ABL83311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioides sp. JS614]
          Length = 956

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/602 (21%), Positives = 240/602 (39%), Gaps = 28/602 (4%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           V  G      + E    E   LL   +F  ++P  FN GT    Q+S+CF+ +V D +  
Sbjct: 104 VDHGYFATVGDAEVFEHELTWLLVHQYFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDS 163

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I    +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G 
Sbjct: 164 ILNWYKEEGFIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGG 222

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R+ A    L+  H D+EEF++ +    D  R   D      +    +  V        
Sbjct: 223 ATRRAAKMVVLDVDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGKDITSVQ------Y 276

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            + +    + D + +  E   +   R    GE  V  ++ A  L+RK+    +E   P +
Sbjct: 277 QNANNSVRVSDEFMRAVEDGTDFGLRARKTGE--VIERVDARELFRKISQAAWECADPGL 334

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDK 620
            + D  N        G + +SN C+E      S + + CNL S+NLL    ++  FD + 
Sbjct: 335 QYDDTINDWHTNPETGRITASNPCSEYM----SLDNSSCNLASLNLLKFLKDDDTFDAEL 390

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
            A  +   +  +D  I       E   ++   +R +G+G     + L  + + Y S    
Sbjct: 391 FAKAVEVIITAMDISICFADFPTEAIGRTTVDYRQLGIGYANLGALLMAMGLGYDSDGGR 450

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DEL 736
            +A      ++  +   S ELA   G Y+ +  +                 VR     + 
Sbjct: 451 AMAAAITSLMTGTSYKRSAELAGVVGPYNGYARNAEAHKRVMRKHQAANDTVRTLAITDS 510

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794
            +++ +   W ++ +   T G RN+    +APT TI  +    +  I+P +  + + K  
Sbjct: 511 QVHKLATQAWADVIELGATHGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLV 570

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF--- 849
             G   +VN  +   LK+     E + + + Y    G + +   +  +  ++  TA    
Sbjct: 571 GGGSMQIVNQTVPRALKKLGYQPEQIEAIVAYIAEHGHVVDAPGLRTEHYEVFDTAMGVR 630

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            + PM  +   +  Q ++  A S  + L E  + + ++ IY Q+W +GLK T   R  + 
Sbjct: 631 SLKPMGHVRMMAAAQPFLSGAISKTVNLPETATVEDVEDIYLQSWKLGLKATAIYRDNAK 690

Query: 909 TS 910
             
Sbjct: 691 VG 692


>gi|226365903|ref|YP_002783686.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           opacus B4]
 gi|226244393|dbj|BAH54741.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus
           opacus B4]
          Length = 711

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 180/742 (24%), Positives = 303/742 (40%), Gaps = 81/742 (10%)

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
             +S  +L+   + +   L            R    +   +     +        H    
Sbjct: 4   PDVSSGELDYHALNAMLNLYGPNGEIQFEKDREAANQYFLQ-----HVNQNTVFFHNQ-- 56

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309
              E     ++E    R + +      +  L +    ++     +LG    Y  Y L   
Sbjct: 57  --DEKLDYLVKENYYEREVLDQYTRNFVKSLIDHAYSKKFRFPTFLGAFKYYTSYTLKTF 114

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +G R  E  +     VA+ LA  +   E+ A +  + + +  F  +TPT  NSG +   +
Sbjct: 115 DGKRYLERFEDRVCMVALTLAAGD---EELATKLVDEIIAGRFQPATPTFLNSGKKQRGE 171

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCFL  + D++  I  ++     L+K  GG+    + VR  GA I     +S GVIP 
Sbjct: 172 PVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKKIENQSSGVIPI 231

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 232 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPD 291

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALW 546
           +  +   +N    LFSP    D+  +YG  F       +      + ++ + KI A   +
Sbjct: 292 ITFELAKKNEDMYLFSP---YDVERIYGVPFADINVTEKYYEMVDDKRIRKSKIKAREFF 348

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594
           + +  + FE+G+P+I ++D  N  +P    G V  SNLC+EI               S  
Sbjct: 349 QTVAELQFESGYPYIMYEDTVNRANPI--AGKVTHSNLCSEILQVSTPSEFNDDLSYSHI 406

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTH 653
            +   CNLGS+N+         D    A TI T++R L  V D  +  ++   KK+N   
Sbjct: 407 GKDISCNLGSLNIAKT-----MDSPDFAQTIETSIRALTAVADQTSIDSVPSIKKANDEG 461

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFK 712
            AIGLG M     L    I Y S E ++  +     + FHAI AS E+A+ERG Y + F 
Sbjct: 462 HAIGLGQMNLHGYLARERIHYGSDEGIDFTNIYFYTVVFHAIRASNEIAKERGTYFAGFP 521

Query: 713 GSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            S +  G +       + E +         +  ++  ++  W ELK  V+  G+ N N  
Sbjct: 522 ESKYASGEYFDKYTDQVWEPKTERVRQLFADAGLHIPTQDDWRELKASVQQHGIYNQNLQ 581

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823
           A+ PT +I+ I   + SI P    + ++     G       +L N+              
Sbjct: 582 AVPPTGSISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND-------------- 627

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
                              + +  A+EI    +I++ +   + +DQ  SL L+  +  + 
Sbjct: 628 -----------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATT 670

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           + ++     AW  G+KT YY+R
Sbjct: 671 RDINKAQIYAWRKGIKTLYYIR 692


>gi|327537908|gb|EGF24608.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula
           baltica WH47]
          Length = 1040

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/622 (19%), Positives = 219/622 (35%), Gaps = 27/622 (4%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
                +    +T    ++   +PQ S+CF+ +V D++  I       AML K+  G G D
Sbjct: 187 MCNWHWDRTQNTTAQPDNPYEYPQGSACFIQSVDDNMEDIMRLACSEAMLFKFGSGTGTD 246

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     + G  G   G + F++V +  A  V  GGK R+ A    L+ WH D+ EF
Sbjct: 247 LSTIRSQREKLSG-GGTPSGPLSFMRVYDSIAGVVKSGGKTRRAAKMQSLKVWHPDILEF 305

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           ++ +                +         V         + +    L D Y +      
Sbjct: 306 IECKWAEEKKAHALIREGYDSNFNGEAYASV------CFQNANLSVRLTDDYMEAVRKNE 359

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               R              A  L  KM    +  G P + +    N      + G +++S
Sbjct: 360 TFQTRWITDKPTTEPPSYVAKELLNKMAECAWHCGDPGVQYDTTINKWHTCPNSGAINAS 419

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCH 641
           N C+E        +   CNL SINL+     +  FD+++  +  RT     + ++D   +
Sbjct: 420 NPCSEYMF----LDDTACNLASINLMKFVQQDGSFDHERFRAACRTFFIAQEILVDHASY 475

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             E   +++H  R +GLG     S +    +PY S  A  +       +   A   S EL
Sbjct: 476 PTEPIARNSHKFRPLGLGYSNLGSVIMTAGLPYDSDAARGMCGSLTALLHGEANRTSAEL 535

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMR 759
           A   G +  +  +                +        +   +R  WD + +  +  G R
Sbjct: 536 ASVVGTFDGYVENEAPMLRVMQMHRDACDQINDDGPAELKEAARELWDGVLEIGEKYGFR 595

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           N+    +APT TI+ +    +  I+P    + Y +    G   +VN  +   LK+     
Sbjct: 596 NAQATVLAPTGTISFMMDCDTTGIEPDIALVKYKQLAGGGMLKIVNQTVKLGLKKLGYDA 655

Query: 818 EAMISDLKY--HDGSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWID 868
           + +   LKY   + +I     + D+   +   AF        I     I   +  Q ++ 
Sbjct: 656 DTIDEILKYVDANDTIEGAPGLQDEHLAVFDCAFKPANGVRSIGWRAHITMMAAAQPFLS 715

Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            A S  + +  + + + +   Y   W +GLK     R  S  S   +T        +A  
Sbjct: 716 GAISKTVNMPTDVTPQDIADAYFWGWELGLKAIAIYRDGSKQSQPLNTKSDEQKATDAAE 775

Query: 928 VTDPNSSTHSLGIPSSCTSDTE 949
                +    +  P        
Sbjct: 776 AAKVETVEKIVYKPRRERLPDT 797


>gi|296171153|ref|ZP_06852601.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894289|gb|EFG74044.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 721

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 173/727 (23%), Positives = 294/727 (40%), Gaps = 79/727 (10%)

Query: 213 EPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVK 265
           E +Y  + A   L       +  ++VL       Q    + +      E     I E   
Sbjct: 20  ETDYHALNAMLNLYDADGKIQFDKDVLAAREYFLQHVNQNTVFFHNQDEKLDYLIRENYY 79

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMR 323
            R + +      +  L +    ++     +LG    Y  Y L   +G R  E  +   + 
Sbjct: 80  EREVLDQYSRNFVKALMDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVM 139

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYG 382
           VA+ LA  +      A +  + +    F  +TPT  NSG +   +  SCFL  + D++  
Sbjct: 140 VALTLAAGD---TGLAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMES 196

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G
Sbjct: 197 IGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLG 256

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LF
Sbjct: 257 ARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLF 316

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWI 561
           SP    D+  +YG  F       +      + ++ +  I A   ++ +  + FE+G+P+I
Sbjct: 317 SP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPYI 373

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLA 609
            F+D  N  +P    G +  SNLC+EI               +   +   CNLGS+N+  
Sbjct: 374 MFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIAK 431

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D    A TI  A+R L  V D  +  ++   ++ N+   AIGLG M     L 
Sbjct: 432 T-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLA 486

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727
              I Y S E ++  +     + +HA+ AS  +A ER  A+  F+ S +  G F      
Sbjct: 487 RERIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGKAFGGFERSKYKSGEFFDKYTD 546

Query: 728 LLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            + E           +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   +
Sbjct: 547 QVWEPQTDKVRQLFADAEIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHST 606

Query: 780 QSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + ++     G       ++ N+                             
Sbjct: 607 SSIHPIASKVEIRKEGKIGRVYYPAPYMTND----------------------------- 637

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
               +    A+EI    +I++ +   + +DQ  SL L+  +  + + ++     AW  G+
Sbjct: 638 --NLEYFQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGI 695

Query: 898 KTTYYLR 904
           KT YY+R
Sbjct: 696 KTLYYIR 702


>gi|190149419|ref|YP_001967944.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249852|ref|ZP_07336056.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244960|ref|ZP_07527057.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307251677|ref|ZP_07533582.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253913|ref|ZP_07535765.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258367|ref|ZP_07540108.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262737|ref|ZP_07544364.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914550|gb|ACE60802.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651419|gb|EFL81571.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854125|gb|EFM86333.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306860874|gb|EFM92882.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863117|gb|EFM95059.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867551|gb|EFM99398.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871882|gb|EFN03599.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 554

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/581 (26%), Positives = 251/581 (43%), Gaps = 94/581 (16%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSAIRN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L SSS+E+ VC L S+NLL        D  ++ +     V   
Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                 +   +E+A +    HRA+GLG++G+ S L   +I + S +A++  +   + +  
Sbjct: 303 FIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNLIFKTLQE 362

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             + AS ELA+  G     KG                                       
Sbjct: 363 KTLKASQELAKRFGEPELLKG--------------------------------------- 383

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  M+IAPT + + I G VS S++P   N YVK          N FL   L+
Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQ 440

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A++RQK+IDQ Q
Sbjct: 441 EKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 500

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           S+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 501 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|197121783|ref|YP_002133734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
 gi|196171632|gb|ACG72605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
          Length = 595

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 168/640 (26%), Positives = 264/640 (41%), Gaps = 86/640 (13%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
                L +L  RY L    G  IE P A F RVA  +A  E    +   A  F   +++ 
Sbjct: 4   LGENALHVLERRYLLRDEAGQVIETPGAMFRRVAQAVAAAEAPAARSAWAERFEARMAAL 63

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             + ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R 
Sbjct: 64  ELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRP 123

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++  
Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLGADHPDVLEFVDAKRAA 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G +     + N +   PD       +   W L  P                         
Sbjct: 184 GLE-----NFNISVAAPDALFHAAARGGRWALRHPR------------------------ 214

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 V R++ A  L  ++    + +G P + F D     +P   +G   + N C E  
Sbjct: 215 ---GGAVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQP 271

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         C LGS+NL       + D ++L + +R  VR+LD+V+D+N   + +  + 
Sbjct: 272 LLPF----EACTLGSVNLARFERAGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEI 327

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +  +R IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+ 
Sbjct: 328 SRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFP 387

Query: 710 SFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F  S     G  P                                    RN+    IAP
Sbjct: 388 GFASSAPAGAGGRP-----------------------------------RRNATVTTIAP 412

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD----LWDEAMISDL 824
           T T+A I G S  I+P +   YV+  +       ++ L  E                   
Sbjct: 413 TGTLAIIAGCSSGIEPLFALTYVRHALD------DAALPEEHPALGRALRAAGAEAALPA 466

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
               G    +  +PD + ++ ATA ++ P   +   +  Q+ +D   S  + L    S +
Sbjct: 467 VRAAGRARGVAGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVE 526

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            +   YR A+ +G K     R  S       +    +G+L
Sbjct: 527 DVAGAYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566


>gi|294782023|ref|ZP_06747355.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481834|gb|EFG29603.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 611

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 198/628 (31%), Positives = 315/628 (50%), Gaps = 56/628 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           K++  D  +   N +++   +  AC GL +V+   + S       + ++   ++ +LI +
Sbjct: 7   KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65

Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           + T+   +E ++A V  R L+ +  REV            +H  +  Y + F + I+  V
Sbjct: 66  AVTMTSFEESDWAYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHMV 112

Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +  L  E      + +L  ++  +   RD  ++Y G  +L +RY +  +G   E+PQ  F
Sbjct: 113 ELGLYDERLLAYTEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQETF 172

Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           M ++M LAL E E   +     EFYN LS      +TP L N    +  LSSCF+T + D
Sbjct: 173 MTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAIDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  IF  +   A ++K  GG+G + + +R  G+ ++G    S GV+P++++ NDTAVAV
Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G+R GAV   L+TWH+D+E FL+L+   GD R + +D+       +LFMKRV  N  
Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352

Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTLF P E+   +     +LYG EFE  YE  E+     +IK+ R +SA  L++ ++   
Sbjct: 353 WTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMKTQ 409

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594
            ETG P+I FKD  N  +   H+G++ + NLC E   N                   S  
Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSEM 469

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            E   CNL S+NL    +      D+L   +  AVR LDN ID+    ++++ K N  +R
Sbjct: 470 GEIHTCNLISLNLAELTS------DELEKYVALAVRALDNTIDLTVTPLKESNKHNLMYR 523

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G MG    L   ++ Y   E++   +E  E I+ ++I AS  LA++RGAY +FKGS
Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTS 742
            WDQ +F                    +
Sbjct: 582 KWDQAIFFGKKREWYEANSKFKDEWNEA 609


>gi|118468034|ref|YP_886648.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           smegmatis str. MC2 155]
 gi|118469666|ref|YP_885419.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           smegmatis str. MC2 155]
 gi|118169321|gb|ABK70217.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170953|gb|ABK71849.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 706

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     IE     R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 52  DEKLDYLIENEYYEREVLDQYSRDFIKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 111

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +    + A +  + +    F  +TPT  NSG +   +  
Sbjct: 112 KRYLERFEDRVVMVALTLAAGD---TELAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPV 168

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 169 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMK 228

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 229 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 288

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I+A   ++ 
Sbjct: 289 FELAKKNEDMYLFSP---YDVERVYGVPFADVSVTEKYYEMVDDARIRKTKINAREFFQT 345

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I F+D  N        G +  SNLC+EI   S+  E            
Sbjct: 346 LAELQFESGYPYIMFEDTVNR--SNPIAGKITHSNLCSEILQVSTPSEFNDDLSYAKVGK 403

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 404 DISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 458

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS ++A ERG  +  F+ S
Sbjct: 459 IGLGQMNLHGYLARERIYYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGTHFKGFEKS 518

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  ++  ++  W +LK+ V+  G+ N N  A+
Sbjct: 519 KYASGEFFDKYTDQVWEPKTDKVRRLFADADIHIPTQDDWKQLKESVQKHGIYNQNLQAV 578

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 579 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYMTND---------------- 622

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                              +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 623 ---------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 667

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 668 VNKAQIYAWRKGIKTLYYIR 687


>gi|314966769|gb|EFT10868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL082PA2]
 gi|315093314|gb|EFT65290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL060PA1]
 gi|315103431|gb|EFT75407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA2]
 gi|327327595|gb|EGE69371.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL103PA1]
          Length = 950

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 136/652 (20%), Positives = 241/652 (36%), Gaps = 67/652 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    I   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G YS +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++ A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835
             I+P +  + + K    G   +VN  +   LK    +       +  +   +GS+    
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616

Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y +
Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            W +GLK     R         S  K  + +  A P            +P S
Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728


>gi|282854026|ref|ZP_06263363.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J139]
 gi|282583479|gb|EFB88859.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J139]
 gi|314981104|gb|EFT25198.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA3]
 gi|315091930|gb|EFT63906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA4]
          Length = 950

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 136/652 (20%), Positives = 241/652 (36%), Gaps = 67/652 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    I   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G YS +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++ A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835
             I+P +  + + K    G   +VN  +   LK    +       +  +   +GS+    
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616

Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y +
Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            W +GLK     R         S  K  + +  A P            +P S
Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728


>gi|314922993|gb|EFS86824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL001PA1]
          Length = 950

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 136/652 (20%), Positives = 241/652 (36%), Gaps = 67/652 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    I   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G YS +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++ A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835
             I+P +  + + K    G   +VN  +   LK    +       +  +   +GS+    
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616

Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y +
Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            W +GLK     R         S  K  + +  A P            +P S
Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728


>gi|325675840|ref|ZP_08155524.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           equi ATCC 33707]
 gi|325553811|gb|EGD23489.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           equi ATCC 33707]
          Length = 728

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 171/675 (25%), Positives = 286/675 (42%), Gaps = 62/675 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + E    R + +      + +L +    ++     +LG    Y  Y L   +G
Sbjct: 74  DEKLDYLVRENYYEREVLDQYSRNFVKWLIDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 133

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A E  + + +  F  +TPT  NSG +   +  
Sbjct: 134 KRYLERFEDRVCMVALTLAAGD---ETLATELVDEIIAGRFQPATPTFLNSGKKQRGEPV 190

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T VR  GA I     +S GVIP +K
Sbjct: 191 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 250

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 251 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 310

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ + KI A   ++ 
Sbjct: 311 FELAKKNEDMYLFSP---YDVERIYGVPFADINVTEKYHEMVDDKRIRKSKIKAREFFQT 367

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCN 601
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI       T N     + V  
Sbjct: 368 LAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSTFNDDLSYSHVGK 425

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D    A TI T++R L  V D  + +++   ++ N+   AIGLG 
Sbjct: 426 DISCNLGSLNIALTMDSPDFAKTIETSIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQ 485

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y S E ++  +     + +HAI AS  +A+ERG  +  F  S +  G
Sbjct: 486 MNLHGYLARERIFYGSEEGIDFTNIYFYSVVYHAIRASNLIAKERGTHFKGFPESDYASG 545

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +       + E +         +  ++  ++  W ELK  V+  G+ N N  A+ PT +
Sbjct: 546 KYFDKYTDQVWEPKTEKVRQLFADAGIHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGS 605

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       +L N+                     
Sbjct: 606 ISYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLTND--------------------- 644

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                       + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 645 ----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQ 694

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 695 IYAWRKGIKTLYYIR 709


>gi|307249356|ref|ZP_07531350.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858650|gb|EFM90712.1| Ribonucleotide reductase, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 554

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/581 (26%), Positives = 250/581 (43%), Gaps = 94/581 (16%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L SSS+E+ VC L S+NLL        D  ++ +     V   
Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                 +   +E+A +    HRA+GLG++G+ S L   +I + S +A++      + +  
Sbjct: 303 FIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNSLIFKTLQE 362

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             + AS ELA+  G     KG                                       
Sbjct: 363 KTLKASQELAKRFGEPEILKG--------------------------------------- 383

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  M+IAPT + + I G VS S++P   N YVK          N FL   L+
Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQ 440

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A++RQK+IDQ Q
Sbjct: 441 EKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 500

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           S+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 501 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|213965883|ref|ZP_03394074.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium amycolatum SK46]
 gi|213951461|gb|EEB62852.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium amycolatum SK46]
          Length = 717

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 177/750 (23%), Positives = 299/750 (39%), Gaps = 81/750 (10%)

Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYK 238
           SE  K + + + E  L+   + +   L  ++     +  ++ AR    +   +     + 
Sbjct: 2   SEMGKQVAEPVGEDKLDYHALNALLNLYGEDGKIQFDKDRMAARQFFLQHVNQNTVFFHN 61

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
             +K  +              +E       + E     D+  L       +     +LG 
Sbjct: 62  LREKLDY-------------LVENHYYEAEVLEKYEFEDVKALFKQAYAHKFRFQTFLGA 108

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +    RV M            A    + + +  F  +TP
Sbjct: 109 YKYYTSYTLKTFDGKRYLERYED---RVCMVALTLADGDLGLAQHLVDEIIAGRFQPATP 165

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  NSG     +  SCFL  + D++  I  A+  +  L+K  GG+    + +R  GA I 
Sbjct: 166 TFLNSGKAQRGEPVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNLREQGAPIK 225

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R
Sbjct: 226 HIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIR 285

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGE 533
              ++    IPD+  +   +N    LFSP    D+  +YGK F      ENY    +   
Sbjct: 286 IKSLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADINITENYADMVEDPR 342

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--- 590
           I+  + I+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI     
Sbjct: 343 IRKQK-INARQFFQTIAEIQFESGYPYIMFEDTVNRANPI--EGRINMSNLCSEILQVNT 399

Query: 591 ----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
               N+      V    S NL +       D      T+ TA+R L  V +  +  ++  
Sbjct: 400 PSTYNADLSYEHVGEDISCNLGSLNIAMTMDSPDFGRTVETAIRGLTAVSEQTSIDSVPS 459

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +K N    AIGLG M     L    I Y S E ++  +     + +  + AS ++A+ER
Sbjct: 460 IRKGNDGSHAIGLGQMNLHGYLGREKIMYGSEEGLDFTNAYFAAVLYAVLRASNKIARER 519

Query: 706 -GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTI 756
              + +F+ S +  G +     P +       V++    +         W +LK  V   
Sbjct: 520 GQKFVNFENSDYASGKYFDNFDPAEFQPKTQHVKEIFENSTAHIPDAEDWAQLKADVMEY 579

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815
           G+ N N  A+ PT +I+ I   + SI P    + ++     G        L N+      
Sbjct: 580 GLFNRNLQAVPPTGSISYINNSTSSIHPIASQIEIRKEGKIGRVYYPAPHLDND------ 633

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                     ++    A+EI    +I++ +   K++DQ  SL L
Sbjct: 634 -------------------------NREYFQDAYEIGYEKIIDTYAVATKYVDQGLSLTL 668

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  +  S + L+     AW  G+KT YY+R
Sbjct: 669 FFKDTVSTRDLNRAQIYAWRKGIKTLYYIR 698


>gi|254820781|ref|ZP_05225782.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           intracellulare ATCC 13950]
          Length = 693

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 168/680 (24%), Positives = 283/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I+E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIKENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A +  + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLASGD---TILAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKKNEDMYLFSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSVFNDDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNESHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG+ +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIHYGSEEGVDFTNIYFYTVLYHALRASNRIAIERGSKFGGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E           E  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTEQVWEPATPRVREIFAEAGIRIPTQDDWRRLKESVQEHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N+                
Sbjct: 566 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 655 VNKAQIYAWRKGIKTLYYIR 674


>gi|217969781|ref|YP_002355015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thauera sp. MZ1T]
 gi|217507108|gb|ACK54119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thauera sp. MZ1T]
          Length = 957

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 147/631 (23%), Positives = 249/631 (39%), Gaps = 78/631 (12%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------G 382
            E ++     +F        F+ +      +GT     L +CF+  V D +        G
Sbjct: 58  AEDKRAHWEAKFLE-AQEKGFVPAGRINSAAGTTLAATLINCFVQPVGDSVTEAVDGRPG 116

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ AL + A   +  GG+G D++ +R  GA + GT   + G + +++V + +   V   G
Sbjct: 117 IYTALAQAAETMRRGGGVGYDFSSIRPKGALVKGTASNASGPVSYMRVFDRSCETVESAG 176

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA    L   H D+EEF+  +     D     + N +  + D FM+ V  +    L 
Sbjct: 177 ARRGAQMGVLRCDHPDIEEFIHAK-----DEGDLTNFNISVGVTDPFMQAVEADGDVELV 231

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
              E ++     G                  + V+RK+ A  LW +++   ++   P I 
Sbjct: 232 HKAEPTEEVKAAGAY-----------QRDDGMWVYRKVRARELWDQVMRSTYDHAEPGIL 280

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FD 617
           F D  N  +   +   + ++N C E  L         C LGSINL     N       FD
Sbjct: 281 FLDRMNADNNLYYCETIEATNPCAEQPLPPY----GCCCLGSINLTLFVKNPFGDKAEFD 336

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           Y      +  ++R+LDNV+++    + +      + R +GLG  G   AL +L   Y + 
Sbjct: 337 YAGFGKVVDVSIRMLDNVLEVTHWPLAQQHAEAQSKRRVGLGFTGLGDALIMLGQRYDTA 396

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           EA E A +  EF+   A  AS ELA+ERGA+  F   L+  G                  
Sbjct: 397 EAREEARKISEFMRNRAYLASSELARERGAFPLFNADLYLSGGNF--------------- 441

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795
               +     ++K +++  G+RNS+ ++IAPT TI+       S  I+P +   Y +   
Sbjct: 442 ----ASRLPADVKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFSYTYTRRKR 497

Query: 796 --SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G F     + V +               K+  G++       D L +   TA EI  
Sbjct: 498 MADGTFK---EYAVEDYA---------WRLYKHLGGNV-------DKLPQSFVTALEISA 538

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
               +  +    ++D + S  + +  +    + + +Y  AW  GLK     R  S     
Sbjct: 539 QAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFEDLYLTAWKAGLKGLATYRPNSVLGSV 598

Query: 913 KS-TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            S T      + + V + D N       +P+
Sbjct: 599 LSVTPTAEQKQPHDVEIADANKRLSIKNLPA 629


>gi|300784301|ref|YP_003764592.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
 gi|299793815|gb|ADJ44190.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
          Length = 937

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 130/654 (19%), Positives = 233/654 (35%), Gaps = 30/654 (4%)

Query: 306 FLHINGSRIEMPQAFFMRVAM--GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                   I+     +++ A   G      + E    E   +L    F  ++P  FN GT
Sbjct: 92  RERSLKQLIDRVVHTYVKAARDHGYFAAPQDLEIFEHELTWMLLHQVFSFNSPVWFNVGT 151

Query: 364 R-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               Q+S+CF+  V D +  I    +E  ++ K   G G + + +R     +    G + 
Sbjct: 152 PSKQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSSKELLTS-GGTAS 210

Query: 423 GVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G + F++ A+ +A  +  G   R+ A    L+  H D+EEF+  +       +   D   
Sbjct: 211 GPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIQTKAREEKKIKVLRDAGF 270

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
              +    +  V         + +    + D + +  E   E   R    GE  V  +  
Sbjct: 271 DMDLSGADISSVQ------YQNANNSVRVTDEFMQAVENGTEFGLRARLTGE--VIDRTD 322

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L+R M    +E   P I +    N        G + +SN C+E        + + CN
Sbjct: 323 AKKLFRTMAQAAWECADPGIQYDGTINDWHTCPESGRITASNPCSEYMH----LDNSSCN 378

Query: 602 LGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L S+NLL        FD    A  +   +  +D  I       E    +    R +G+G 
Sbjct: 379 LASLNLLKFVTPEGTFDAPLFARAVEFVITAMDVSICFADFPTEPIADTTRKFRQLGIGY 438

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
               + L  L   Y S     +A      ++  +   S E+A+  GAY  +  +      
Sbjct: 439 ANLGALLMALGHAYDSEGGRALAAAITSLMTGVSYRRSAEMARVVGAYEGYARNAEAHQR 498

Query: 721 FPIDSIGLLAEVRDEL----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                      VR       A+   +   W +  +     G RN+    +APT TI  + 
Sbjct: 499 VMRKHAAANELVRTYHSNDAAVRALATEEWQKGIEIGAKHGWRNAQASVLAPTGTIGFMM 558

Query: 777 GV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIG 832
              +  I+P +  + + K    G   +VN  +   L+      E + + ++Y   +G + 
Sbjct: 559 DCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTVPRALEALGYLTEQVEAIVEYVAQNGHVV 618

Query: 833 NIERIPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
           +   +  +  ++   A     I PM  +   +  Q ++  A S  + + E  + ++++ I
Sbjct: 619 DAPGLRPEHYEVFDCAVGERSIAPMGHVRMMAAVQPFLSGAISKTVNMPESATVEEVEEI 678

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           Y Q W +GLK     R         ST K          V +       L    
Sbjct: 679 YFQGWKLGLKALAIYRDNCKVGQPLSTAKKESAAAEPEKVVEYRPVRKRLPKKR 732


>gi|260102936|ref|ZP_05753173.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
 gi|260083262|gb|EEW67382.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
          Length = 722

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 179/750 (23%), Positives = 316/750 (42%), Gaps = 79/750 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++ T  + E  NY             +E      +   +    +   L  E   
Sbjct: 8   DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 58

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 59  YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 118

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 175

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q      ++ +  I+A   ++ +  + 
Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFINARKFFQTIAEVQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 412

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL S +  +V+ L+ V    +       KK N  +RAIGLG 
Sbjct: 413 LGSLNIAAAMNSA----DKLGSLVSDSVQALNRVARSSDLDCAPSIKKGNKANRAIGLGA 468

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA++ GA+  FK S +  G 
Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 528

Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I          + E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 529 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +         V ++                           
Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L++++  + + L+  Y 
Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678

Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            A+     + YY+R R       E  T   
Sbjct: 679 YAFKKRCNSIYYVRVREKVLAGSENLTADE 708


>gi|323495951|ref|ZP_08101017.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326]
 gi|323318986|gb|EGA71931.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326]
          Length = 693

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 173/676 (25%), Positives = 286/676 (42%), Gaps = 81/676 (11%)

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-----EYLGLQILYDRYFLH-INGSRI-EMP 317
           +     E +  +D  +L   L ++R +        +LG    +  Y L   +G R  E  
Sbjct: 48  EGYYEKEVLEQYDREFLQ--LIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGKRYLERF 105

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376
           +    RV M         +  A++    + S  F  +TPT  NSG +   +L SCFL  +
Sbjct: 106 ED---RVVMTALTLARGDKAFALDLMQEIISQRFQPATPTFINSGKKSRGELISCFLLRI 162

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I  A+  +  L++  GG+    + +R  GA I G   +S GV+P +K+  D+  
Sbjct: 163 EDNMESIGRAINSSLQLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKLLEDSFS 222

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+ ++   QN
Sbjct: 223 YANQLGARQGAGAVYLNAHHPDIMQFLDTKRENADEKIRIKTLSLGIVIPDITLELAKQN 282

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
               LFSP +V     +YG  F      E Y    D   I+  + ISA  L++ +  + F
Sbjct: 283 KDMYLFSPHDV---ERVYGVPFSEISVSEKYHEMVDDPRIRKSK-ISARGLFQTLAEIQF 338

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNL 602
           E+G+P++ F+D  N  +P    G ++ SNLC+EI               +       CNL
Sbjct: 339 ESGYPYLMFEDTVNAANPI--KGRINMSNLCSEILQVNDASHFNDDLSYAHLGRDISCNL 396

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLM 661
           GS+N+         D+     T+  ++R L+ V +++   ++   ++ N    AIGLG M
Sbjct: 397 GSVNIAKALDGGHLDH-----TVEVSIRALNAVSEMSAIDSVPSIRRGNDESHAIGLGQM 451

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV 720
                L    I Y S EAV+          +H ++AS +LA ER   +  F+ S +  G 
Sbjct: 452 NLHGFLAREQIHYDSEEAVDFTRTYFATTLYHCLTASNKLALERKQVFVGFEHSQYATGE 511

Query: 721 FPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           F    +      R        + L M   S   W +L+ +V   G+ N N  AI PT +I
Sbjct: 512 FFTKYLQQDYSPRTDIVAALFERLDMRVPSIDDWQQLQSKVMESGLYNRNLQAIPPTGSI 571

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G       +L N+                      
Sbjct: 572 SYINDATASIHPVTAKVEIRKEGKIGRVYFPAPYLSND---------------------- 609

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
                           A+EI P  +I+  +   + +DQ  SL L+  +  + + ++    
Sbjct: 610 ---------NLDYFKDAYEIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRDINKAQI 660

Query: 891 QAWLMGLKTTYYLRSR 906
            AW   +KT YY+R R
Sbjct: 661 YAWKKKIKTLYYIRMR 676


>gi|108798785|ref|YP_638982.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. MCS]
 gi|119867903|ref|YP_937855.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. KMS]
 gi|126434386|ref|YP_001070077.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           sp. JLS]
 gi|108769204|gb|ABG07926.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. MCS]
 gi|119693992|gb|ABL91065.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. KMS]
 gi|126234186|gb|ABN97586.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. JLS]
          Length = 693

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 169/707 (23%), Positives = 289/707 (40%), Gaps = 73/707 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           +  ++VL       Q    + +      E     I++    R + +      +  L +  
Sbjct: 12  QFDKDVLAAREYFLQHVNQNTVFFHNQDEKLDYLIQKDYYEREVLDQYSRNFVKTLLDRA 71

Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     +LG    Y  Y L   +G R  E  +   + VA+ LA  +      A +  
Sbjct: 72  YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGD---TTLAEKLV 128

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 129 DEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 188

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 189 LLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 248

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F    
Sbjct: 249 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFADIS 305

Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              +      + ++ +  I A   ++ +  + FE+G+P+I ++D  N        G +  
Sbjct: 306 VTEKYYEMVDDSRIRKTKIKAREFFQTLAELQFESGYPYIMYEDTVNR--SNPIEGKITH 363

Query: 582 SNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI   S+  E               CNLGS+N+         D    A TI  A+
Sbjct: 364 SNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIAKA-----MDSPDFAQTIEVAI 418

Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +    
Sbjct: 419 RALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGVDFTNIYFY 478

Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMN 739
            + +HA+ AS  +A ERG  +  F+ S +  G F         E +         +  + 
Sbjct: 479 TVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQPWEPKTERVRQLFADAGIR 538

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GD 798
             ++  W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + ++     G 
Sbjct: 539 IPNQDDWRRLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKIGR 598

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 +L N+                                 + +  A+EI    +I+
Sbjct: 599 VYYPAPYLTND-------------------------------NLEYYQDAYEIGYEKIID 627

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 628 TYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674


>gi|262165763|ref|ZP_06033500.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus VM223]
 gi|262025479|gb|EEY44147.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus VM223]
          Length = 722

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 169/743 (22%), Positives = 301/743 (40%), Gaps = 89/743 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S  DL+   + +   ++++E     +  K   R    +   +     +   +K  +   Q
Sbjct: 18  SRKDLDFHALNAMLNILDREGQIQFDADKRAVRQYFLQHVNQNTVFFHHLDEKLDYLLEQ 77

Query: 250 CLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             Y  + F  Y  E +           F         K+     F    L+         
Sbjct: 78  GYYDAQVFAPYSREFLHHIWQSAFTQKFRFPSFLGAYKF-----FTAYALKT-------R 125

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
                +E  +   +  A+ LA  +     + +     + S  F  +TPT  N+G +   +
Sbjct: 126 DGKRYLERFEDRVVMTALTLARGDEAFAMQLMR---EILSGRFQPATPTFINAGKKSRGE 182

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I     +S GVIP 
Sbjct: 183 LISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPV 242

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD
Sbjct: 243 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPD 302

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVAL 545
           +  +   +N    LFSP    D+  +YG  F      E Y+   +  EI+  + I+A  L
Sbjct: 303 ITFELAKKNKEMYLFSP---YDVERVYGVPFADISVNEKYDEMVENAEIRKTK-INAREL 358

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593
           ++ +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI                 
Sbjct: 359 FQTIAEIQFESGYPYLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQY 416

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+         D   L  ++  AVR L  V ++    ++   +K N  
Sbjct: 417 LGTDISCNLGSLNIAKT-----MDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQ 471

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSF 711
             AIGLG M     L    I Y S E ++  +     I+FH + AS ++A+E +  +  F
Sbjct: 472 SHAIGLGQMNLHGFLAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDF 531

Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + S +  G +    +         ++  + +  A+   ++  W +LK+ V   G+ N N 
Sbjct: 532 ERSRYASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNL 591

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I   + SI P    + ++     G       ++ N+             
Sbjct: 592 QAVPPTGSISYINYSTSSIHPITAKIEIRKEGQVGRVYYPAPYMTND------------- 638

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
                                 +  A+EI P  +I++ +   + +DQ  SL L+     +
Sbjct: 639 ------------------NLNYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASAT 680

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 681 TRDINKAQIYAWKKGIKTLYYVR 703


>gi|269794348|ref|YP_003313803.1| ribonucleoside-diphosphate reductase class Ib subunit alpha
           [Sanguibacter keddieii DSM 10542]
 gi|269096533|gb|ACZ20969.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 693

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 171/675 (25%), Positives = 284/675 (42%), Gaps = 64/675 (9%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +E       +        +  L +    ++     +LG    Y  Y L   +G 
Sbjct: 40  EKLEYLVENKYYEPEILAKYTPAFVKSLFDLAYSKKFRFETFLGAFKYYTSYTLKTFDGK 99

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA      E  AV     + +  F  +TPT  NSG     +  S
Sbjct: 100 RYLERFEDRVCMVALTLA---DGDETTAVNVVEEIIAGRFQPATPTFLNSGKAQRGEAVS 156

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 157 CFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVMKL 216

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 217 LEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 276

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548
           +   +N    LFSP    D+  +YGK F      E Y    D G I+  + I A   ++ 
Sbjct: 277 ELARKNEDMYLFSP---YDVERVYGKPFADVAISEKYHEMVDDGRIRKTK-IKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSEETAVCNLG- 603
           +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI       + +++ +  ++G 
Sbjct: 333 LAELQFESGYPYVMFEDTVNAANPI--KGRITHSNLCSEILQVSTPSTYNDDLSYEHIGR 390

Query: 604 --SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D    A TI TA+R L  V D  +  ++   +++N +  AIGLG 
Sbjct: 391 DISCNLGSMNIAKAMDSPDFAKTIDTAIRALTAVSDQTSIDSVPSIRRANESGHAIGLGQ 450

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    + Y S E ++  +     ++FHAI+AS  LA ER   +  F+ S +  G
Sbjct: 451 MNLHGYLARERVFYGSEEGIDFTNIYFYTVAFHAIAASNRLAIERKRFFGGFEDSKYATG 510

Query: 720 VFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +       + E           +  ++  ++  W ELK  V   G+ N N  A+ PT +
Sbjct: 511 EYFDKYTDQVWEPATDRVRQIFADAGVHIPTQQDWAELKASVMEHGIYNQNLQAVPPTGS 570

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       +L N+                     
Sbjct: 571 ISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND--------------------- 609

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                       + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 610 ----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQ 659

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 660 IYAWRKGIKTLYYIR 674


>gi|157371958|ref|YP_001479947.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           proteamaculans 568]
 gi|157323722|gb|ABV42819.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia
           proteamaculans 568]
          Length = 714

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 173/738 (23%), Positives = 303/738 (41%), Gaps = 79/738 (10%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           + S L+   + +   L + E     +  ++ AR    +   +     +   +K  +    
Sbjct: 10  TTSALDYHSLNAMLNLYDAEGRIQFDKDRLAARQYFLQHVNQNTVFFHNLEEKLRY---- 65

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
                     +EEG   + +        +  L      ++     +LG    Y  Y L  
Sbjct: 66  ---------LVEEGYYEQSVLAQYDFAFIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKT 116

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +     VAM LA  +      A +    + S  F  +TPT  N G +   
Sbjct: 117 FDGKRYLERYEDRVCMVAMTLAAGD---TALAQDLVEEMISGRFQPATPTFLNCGKQQRG 173

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  A+     L+K  GG+    T +R +GA I     +S GVIP
Sbjct: 174 ELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIP 233

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 234 IMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 293

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545
           D+  +    N    LFSP    D+  +YG  F     + + +    + ++ + +I+A   
Sbjct: 294 DITFELAKNNEEMYLFSP---YDVEQVYGVPFSEISVSEKYREMVDDKRIRKSRINAREF 350

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSEETAVCN 601
           ++ +  + FE+G+P++ F+D  N        G ++ SNLC+EI       +  ++ +   
Sbjct: 351 FQVLAEIQFESGYPYMMFEDTVNR--ENPIAGRINMSNLCSEILQVNRASTYHDDLSYDQ 408

Query: 602 LG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
           +G   S NL +       D       + TA+R L  V D+ +  ++    + N +  AIG
Sbjct: 409 VGKDISCNLGSLNIAKTMDAPDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRSSHAIG 468

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y S E ++  +     +++HAI AS +LA ER  A+  F+ S +
Sbjct: 469 LGQMNLHGYLARERIFYGSEEGIDFTNIYFYAVAYHAIRASNQLAIERGSAFGGFEDSTY 528

Query: 717 DQGVFP-----IDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D +     VR   A    +   R  W  L++ V   G+ N N  A+ P
Sbjct: 529 ASGEYFSKYTERDWLPQTERVRTLFADANIAIPGREEWLALRQSVMMHGLYNQNLQAVPP 588

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++     G       ++ N+                  
Sbjct: 589 TGSISYINNSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMTND------------------ 630

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                          + +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 631 -------------NLEYYQDAYDIGPEKIIDTYAAASQHVDQGLSLTLFFRDTATTRDIN 677

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 678 RAQIYAWRKGIKTIYYIR 695


>gi|317124572|ref|YP_004098684.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Intrasporangium calvum DSM 43043]
 gi|315588660|gb|ADU47957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Intrasporangium calvum DSM 43043]
          Length = 970

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/628 (19%), Positives = 236/628 (37%), Gaps = 28/628 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E    L    F  ++P  FN GT+   Q+S+CF+  V D +  I  
Sbjct: 111 GYFATDEDAQIFEHELTYSLLHQVFSFNSPVWFNVGTKSPQQVSACFILAVEDSMDSILN 170

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + +   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 171 WYKEEGKIFQGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +                 + 
Sbjct: 230 RAAKMVVLDVDHPDIEEFIETKAREEDKIRALRDAGFDMDL------GGRDIVSVQYQNA 283

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    ++  + +  E   +   +   R +  V  ++ A  L+ KM    +E   P I + 
Sbjct: 284 NNSVRVNAEFMRAVEEGTKFGLKA--RLDGSVIEEVDARELFHKMAQAAWECADPGIQYD 341

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623
           D  N        G + +SN C+E      S + + CNL S+NLL     ++ FD      
Sbjct: 342 DIINDWHTNPETGRITASNPCSEYM----SLDNSSCNLASLNLLKFLRDDDTFDAATFQK 397

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
                +  +D  I       EK  ++   +R +G+G     + L      Y S     +A
Sbjct: 398 VTELVITAMDISISFADFPTEKIAETTRNYRQLGIGYANLGALLMATGHGYDSEGGRALA 457

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739
                 ++  A   S ELA   G Y+ +  +                 ++     +  ++
Sbjct: 458 AAITSLLTGAAYKRSAELAAVVGPYAGYARNAEAHKRVMRKHQAANDTLKTVGVMDADIH 517

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           + +   WD + K  +  G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 518 QAATKAWDVVVKLGEKNGYRNAQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 577

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   LK+     E++ + ++Y  H G + +   +  +  +I  TA     I 
Sbjct: 578 SMQIVNLTIPRALKKLGYQQESIEAIVEYIAHKGHVIDAPGLKPEHYEIFDTAMGARAIA 637

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q ++  A S  + L E  + ++++ +Y Q W +GLK     R       
Sbjct: 638 PMGHVRMMAATQPFLSGAISKTVNLPESATVEEIEDVYFQGWKLGLKALAIYRDSCKVGQ 697

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
             S       +  A            + 
Sbjct: 698 PLSDGGSTAKEAQAAKDAGEVKVEKVIE 725


>gi|240950329|ref|ZP_04754599.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor NM305]
 gi|240295140|gb|EER45959.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus
           minor NM305]
          Length = 554

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 159/581 (27%), Positives = 249/581 (42%), Gaps = 94/581 (16%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGFADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSGYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGREWLESMKAGDPYK--------------- 209

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L S+SEE+ VC L S+NLL        D  ++ +     V   
Sbjct: 243 KDKNMTVHASNLCTEIMLPSNSEESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                 +   + +A K    HRA+GLG++G+ S L   +IP+ S EA++  +   + +  
Sbjct: 303 FIEKSKDIPFLHRATKFAIRHRALGLGVLGWHSYLQSNNIPFDSFEAMQKNNLIFKTLQE 362

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             + AS ELAQ  G     KG                                       
Sbjct: 363 KTLKASQELAQRFGEPELLKG--------------------------------------- 383

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  M+IAPT + + I G VS S++P   N YVK          N FL   LK
Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLK 440

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L  E +   + + DGS+ ++E++ +  K +  T  EI  + +I+ A++RQK+IDQ Q
Sbjct: 441 EKGLDKEEIWESILHTDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAAQRQKYIDQGQ 500

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           S+NL +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 501 SINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541


>gi|283457962|ref|YP_003362568.1| ribonucleotide reductase subunit alpha [Rothia mucilaginosa DY-18]
 gi|283133983|dbj|BAI64748.1| ribonucleotide reductase, alpha subunit [Rothia mucilaginosa DY-18]
          Length = 726

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 175/743 (23%), Positives = 300/743 (40%), Gaps = 76/743 (10%)

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           ++    + G+S  +L   L      L ++         R    +   +     +      
Sbjct: 19  KSVPEKFKGMSYHELNALL-----NLYDENGQIQFDADRQAARQYFLQ-----HVNNNTV 68

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
             H+++    E     IE       L +      +  L       +     +LG    Y 
Sbjct: 69  FFHDLE----EKIEYLIENQYYEPELFDKYNFQFIKNLFKRAYAVKFRFPTFLGAFKFYT 124

Query: 304 RYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
            Y L   +G R  E  +    RV M   L     EK A +  + + S  F  +TPT  N+
Sbjct: 125 SYALKTFDGQRYLERFED---RVCMVALLLAEGNEKLAEDIVDEIISGRFQPATPTFLNA 181

Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           G +   +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +
Sbjct: 182 GKKQRGELVSCFLLRMEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQ 241

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++
Sbjct: 242 SSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKIRIKTLS 301

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFR 538
               IPD+  +   +N    LFSP +V  ++ +          Y      A   + K   
Sbjct: 302 LGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDARITKSK--- 358

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSS 594
            I+A   ++ +  + FE+G+P++ F+D  N  +P    G V  SNLC+EI       +  
Sbjct: 359 -INAREFFQTIAEIQFESGYPYVMFEDTVNRANPI--AGKVIMSNLCSEILQVSEPSTYH 415

Query: 595 EETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650
            +     +G   S NL +       D D    T+ TA+R L +V D  +  ++   ++ N
Sbjct: 416 ADLGYETVGKDISCNLGSLNIALTMDGDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGN 475

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
           +   A+GLG M     L   H+ Y S EA++  +     +++HAI  S+++A+ER   + 
Sbjct: 476 NMSHAVGLGQMNLHGYLAREHVYYGSEEALDFTNMYFYTVAYHAIRTSMQIAKERGQRFE 535

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            F+ S +  G F    I      + E         +  +R  W +L   V   GM N N 
Sbjct: 536 GFENSKYASGEFFAKYIEKEWAPQTERTRELFAKHHIPTREEWIQLAADVAQYGMYNQNL 595

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I G + SI P    + ++     G       ++ N+             
Sbjct: 596 QAVPPTGSISYINGSTSSIHPIAAKIEIRKEGKLGRVYYPAPYMTND------------- 642

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                               + +  ++EI    +I++ +   + +DQ  SL L+  +  +
Sbjct: 643 ------------------NLEYYQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIR 707


>gi|254471481|ref|ZP_05084883.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio
           sp. JE062]
 gi|211959627|gb|EEA94825.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio
           sp. JE062]
          Length = 716

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 184/726 (25%), Positives = 303/726 (41%), Gaps = 81/726 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES-- 272
           +Y  + A   L     ++     ++  +    E       +F    E+       +    
Sbjct: 17  DYHALNAMLNLYDAEGKIQFDADRQAARQYFLEHVNQNTVFFHSLEEKLSYLVRENYYEA 76

Query: 273 --MMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
             +  +DL ++       YER F F  +LG    Y  Y L   +G R  E  +    RV 
Sbjct: 77  EVLDQYDLAFVKAIFVAAYERKFRFPTFLGAFKFYTSYALKTFDGKRYLERYED---RVV 133

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           M         E  A+   + + S  F  +TPT  N+G +   +L SCFL  + D++  I 
Sbjct: 134 MTALALSRGDEDLAMRMMDEIISNRFQPATPTFLNAGKKQRGELISCFLLRLEDNMESIG 193

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            ++     L+K  GG+    T +R  GA I G   +S GV P +K+  D+    NQ G R
Sbjct: 194 RSINSALQLSKRGGGVALLLTNLREAGAPIKGVENQSSGVGPVMKLLEDSFSYANQLGAR 253

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   QN    LFSP
Sbjct: 254 QGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKQNEEMYLFSP 313

Query: 505 DEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            +V     +YG  F      E Y    D  +I+  +K+ A   ++ +  + FE+G+P+I 
Sbjct: 314 HDV---EKVYGIPFSEIAVTEKYREMVDNPKIRK-KKMRAREFFQLLAEIQFESGYPYIL 369

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAH 610
           F+D  N        G ++ SNLC+EI               +       CNLGS+N+   
Sbjct: 370 FEDTANA--VNPVAGRINMSNLCSEILQVNEASTFKDDLSYAHLGSDISCNLGSLNIARA 427

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D   L ST+ TA+R L  V +++   ++   ++ N    AIGLG M     L  
Sbjct: 428 -----MDGGDLGSTVETAIRALTAVSEMSAIVSVPSVRRGNDESHAIGLGQMNLHGFLAR 482

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA++  +     + +H + AS  +A+ERG ++  F+ S +  G F    +  
Sbjct: 483 ELIHYGSPEAIDFTNIYFCIVLYHCLRASNAMARERGVSFKGFEDSQYASGAFFDKYVEK 542

Query: 729 LAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                        ++  ++  +R  W  LK  V T G+ N N  A+ PT +I+ I   + 
Sbjct: 543 DWLPDTERVVALFEKFGIHIPTRAEWVALKDAVMTDGLLNRNLQAVPPTGSISYINNSTS 602

Query: 781 SIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + ++     G       F+ N+                              
Sbjct: 603 SIHPIVSKIEIRKEGKIGRVYYPAPFMNND------------------------------ 632

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
              + +  A+EI P  LI++ +   + +DQ  SL L+  +  + + ++     AW  G+K
Sbjct: 633 -NLEYYRDAYEIGPEALIDTYAAATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWKKGIK 691

Query: 899 TTYYLR 904
           T YY+R
Sbjct: 692 TIYYVR 697


>gi|239622881|ref|ZP_04665912.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239514878|gb|EEQ54745.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 731

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 162/739 (21%), Positives = 283/739 (38%), Gaps = 78/739 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L       +  ++      Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASTAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               I        +        L  +   ++        +LG    Y  Y L     R+ 
Sbjct: 75  LEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
           + + F  R A          E++A+E+ + + +  F  +TPT  N G     +  SCFL 
Sbjct: 135 L-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D+
Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDS 253

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   
Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           Q A   LFSP    D+  +YGK F              + ++ +  I A   +  +  + 
Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           FE+G+P+I F+D  N  +P             +  V   +   E    +       CNLG
Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+             L  T+ TA+R L +V +  + + +   +++N    AIGLG M 
Sbjct: 431 SLNIAKTMDG------GLGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S + +   
Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544

Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767
             +      + R  L                   +   W+ L+  +   G+ N N  A+ 
Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWETLRDAILKDGIYNQNLQAVP 604

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G      +++ N+                 
Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
           + G               +  A+EI    ++++ +   + +DQ  SL L+  +  + + L
Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712


>gi|313820320|gb|EFS58034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA1]
 gi|313822873|gb|EFS60587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA2]
 gi|314925207|gb|EFS89038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL036PA3]
          Length = 950

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +    +  V           
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +       +GK F +              KV   + A  L+ K+    +E   P + + 
Sbjct: 288 SDAFMAAVEHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623
           D  N      + G +++SN C+E      S + + CNL S+NLL     N+ FD +K   
Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E   K+    R +G+G     + L  L + Y S     +A
Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739
                 ++  +   S ELA   G Y  +  +                 +     ++ A+ 
Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851
              +VN  +   LK    +       +  +   +GS+     + +   ++   A     I
Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            PM  +   +  Q ++  A S  + L E  + + +  +Y + W +GLK     R      
Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
              S  K  + +  A P            +P S
Sbjct: 696 QPLSEAKKKEEEEKAKPEVRIEYRPRRQRLPKS 728


>gi|289425582|ref|ZP_06427359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK187]
 gi|289427199|ref|ZP_06428915.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J165]
 gi|295130586|ref|YP_003581249.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK137]
 gi|289154560|gb|EFD03248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK187]
 gi|289159668|gb|EFD07856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes J165]
 gi|291375818|gb|ADD99672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes SK137]
 gi|313772155|gb|EFS38121.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL074PA1]
 gi|313792149|gb|EFS40250.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA1]
 gi|313810019|gb|EFS47740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL083PA1]
 gi|313818553|gb|EFS56267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL046PA2]
 gi|313825195|gb|EFS62909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL063PA1]
 gi|313830347|gb|EFS68061.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL007PA1]
 gi|313833721|gb|EFS71435.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL056PA1]
 gi|313838725|gb|EFS76439.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL086PA1]
 gi|314960010|gb|EFT04112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA2]
 gi|314962807|gb|EFT06907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL082PA1]
 gi|314973352|gb|EFT17448.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL053PA1]
 gi|314976029|gb|EFT20124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL045PA1]
 gi|314978432|gb|EFT22526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL072PA2]
 gi|314983949|gb|EFT28041.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA1]
 gi|314988133|gb|EFT32224.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA2]
 gi|314989937|gb|EFT34028.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA3]
 gi|315078024|gb|EFT50075.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL053PA2]
 gi|315080649|gb|EFT52625.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL078PA1]
 gi|315084321|gb|EFT56297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL027PA2]
 gi|315085663|gb|EFT57639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA3]
 gi|315088915|gb|EFT60891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL072PA1]
 gi|315095897|gb|EFT67873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL038PA1]
 gi|327326179|gb|EGE67969.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL096PA2]
 gi|327331946|gb|EGE73683.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL096PA3]
 gi|327443147|gb|EGE89801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL013PA2]
 gi|327445932|gb|EGE92586.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL043PA2]
 gi|327448088|gb|EGE94742.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL043PA1]
 gi|327453133|gb|EGE99787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL092PA1]
 gi|328753478|gb|EGF67094.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL020PA1]
 gi|328760860|gb|EGF74426.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL099PA1]
 gi|332675426|gb|AEE72242.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes 266]
          Length = 950

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +    +  V           
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +       +GK F +              KV   + A  L+ K+    +E   P + + 
Sbjct: 288 SDAFMAAVEHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623
           D  N      + G +++SN C+E      S + + CNL S+NLL     N+ FD +K   
Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E   K+    R +G+G     + L  L + Y S     +A
Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739
                 ++  +   S ELA   G Y  +  +                 +     ++ A+ 
Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851
              +VN  +   LK    +       +  +   +GS+     + +   ++   A     I
Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            PM  +   +  Q ++  A S  + L E  + + +  +Y + W +GLK     R      
Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
              S  K  + +  A P            +P S
Sbjct: 696 QPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|313807511|gb|EFS45998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA2]
          Length = 950

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +    +  V           
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +       +GK F +              KV   + A  L+ K+    +E   P + + 
Sbjct: 288 SDAFMAAVEHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623
           D  N      + G +++SN C+E      S + + CNL S+NLL     N+ FD +K   
Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E   K+    R +G+G     + L  L + Y S     +A
Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739
                 ++  +   S ELA   G Y  +  +                 +     ++ A+ 
Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851
              +VN  +   LK    +       +  +   +GS+     + +   ++   A     I
Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            PM  +   +  Q ++  A S  + L E  + + +  +Y + W +GLK     R      
Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
              S  K  + +  A P            +P S
Sbjct: 696 QPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|184200806|ref|YP_001855013.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria
           rhizophila DC2201]
 gi|183581036|dbj|BAG29507.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria
           rhizophila DC2201]
          Length = 719

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 176/743 (23%), Positives = 295/743 (39%), Gaps = 86/743 (11%)

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           Y GL   +L   L      L + E N      R    +   +     +        H+++
Sbjct: 16  YRGLGYHELNALL-----NLYDAEGNIQFEADRQAARQYFLQ-----HVNKNTVFFHDLE 65

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
               E     ++       + E      +  L+      +     +LG    Y  Y L  
Sbjct: 66  ----EKLKYLVDHQYYEAEVLEKYSVEFIKELSKQAYGYKFRFQTFLGAFKFYTSYTLKT 121

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +    RV M         E  A      + S  F  +TPT  N+G +   
Sbjct: 122 FDGQRYLERFED---RVVMVSLYLADGDETLAKRLVGEIISGRFQPATPTFLNAGKKQRG 178

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL    D++  I   +     L+K  GG+    T +R  GA I     +S GVIP
Sbjct: 179 ELVSCFLVRFEDNMESIGRNINSALQLSKRGGGVAFALTNLRESGAPIKMIENQSSGVIP 238

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 239 VMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILNFLDTKRENADEKIRIKTLSLGVVIP 298

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545
           D+  +   +N    LFSP    D+  +YG  F     + +      + ++ +  I+A   
Sbjct: 299 DITFELAKKNQDMYLFSP---YDVERIYGMPFADVNVSEKYHEMVDDSRITKTKINAREF 355

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593
           ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               + 
Sbjct: 356 FQTVAEVQFESGYPYIMFEDTVNRANPI--DGKIIMSNLCSEILQVSEPSVYNEDLTYAE 413

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
             +   CNLGS+N+     +         ++I TA+R L  V D+ N  ++   ++ N  
Sbjct: 414 VGKDISCNLGSMNIAMAMESP-----DFGASIETAIRGLTAVSDMSNIDSVPSIRRGNQM 468

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             A+GLG M     L   H+ Y S E V+  +     +++HAI AS  +A+ER  ++  F
Sbjct: 469 SHAVGLGQMNLHGYLAKEHVFYGSEEGVDFTNMYFYAVTYHAIRASNLIAKERGESFVGF 528

Query: 712 KGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + S +  G +    I    E              +   +   W EL+++V   GM N N 
Sbjct: 529 EKSDYANGTYFDKYIDGTWEPATARVRELFARAGVALPTAQDWRELREKVMADGMYNQNL 588

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I   + SI P    + ++     G       F+                
Sbjct: 589 QAVPPTGSISYINNSTSSIHPIASRIEIRKEGKLGRVYYPAPFM---------------- 632

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                           D+  +    A+EI    +I++ +   + +DQ  SL L+  +  +
Sbjct: 633 ---------------NDENLEYFQDAYEIGFEKIIDTYAAATQHVDQGLSLTLFFKDTAT 677

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY R
Sbjct: 678 TRDINRAQIYAWRKGIKTMYYSR 700


>gi|327330249|gb|EGE71998.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes HL097PA1]
          Length = 950

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++ A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835
             I+P +  + + K    G   +VN  +   LK    +       +  +   +GS+    
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616

Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y +
Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            W +GLK     R         S  K  + +  A P            +P S
Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|262171414|ref|ZP_06039092.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus MB-451]
 gi|261892490|gb|EEY38476.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit
           [Vibrio mimicus MB-451]
          Length = 722

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 169/743 (22%), Positives = 301/743 (40%), Gaps = 89/743 (11%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S  DL+   + +   ++++E     +  K   R    +   +     +   +K  +   Q
Sbjct: 18  SRKDLDFHALNAMLNILDREGQIQFDADKRAVRQYFLQHVNQNTVFFHHLDEKLDYLLEQ 77

Query: 250 CLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             Y  + F  Y  E +           F         K+     F    L+         
Sbjct: 78  GYYDAQVFAPYSREFLHHIWQSAFTQKFRFPSFLGAYKF-----FTAYALKT-------R 125

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
                +E  +   +  A+ LA  +     + +     + S  F  +TPT  N+G +   +
Sbjct: 126 DGKRYLERFEDRVVMTALTLARGDEAFAMQLMR---EILSGRFQPATPTFINAGKKSRGE 182

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I     +S GVIP 
Sbjct: 183 LISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPV 242

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD
Sbjct: 243 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPD 302

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVAL 545
           +  +   +N    LFSP    D+  +YG  F      E Y+   +  EI+  + I+A  L
Sbjct: 303 ITFELAKKNKEMYLFSP---YDVERVYGVPFADISVNEKYDEMVENAEIRKTK-INAREL 358

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593
           ++ +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI                 
Sbjct: 359 FQTIAEIQFESGYPYLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQH 416

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652
                 CNLGS+N+         D   L  ++  AVR L  V ++    ++   +K N  
Sbjct: 417 LGTDISCNLGSLNIAKT-----MDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQ 471

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSF 711
             AIGLG M     L    I Y S E ++  +     I+FH + AS ++A+E +  +  F
Sbjct: 472 SHAIGLGQMNLHGFLAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDF 531

Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + S +  G +    +         ++  + +  A+   ++  W +LK+ V   G+ N N 
Sbjct: 532 ERSRYASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNL 591

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I   + SI P    + ++     G       ++ N+             
Sbjct: 592 QAVPPTGSISYINYSTSSIHPITAKIEIRKEGQVGRVYYPAPYMTND------------- 638

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
                                 +  A+EI P  +I++ +   + +DQ  SL L+     +
Sbjct: 639 ------------------NLNYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASAT 680

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 681 TRDINKAQIYAWKKGIKTLYYVR 703


>gi|283786770|ref|YP_003366635.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter
           rodentium ICC168]
 gi|282950224|emb|CBG89860.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter
           rodentium ICC168]
          Length = 714

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 177/733 (24%), Positives = 303/733 (41%), Gaps = 75/733 (10%)

Query: 205 SSRTLIEKEPNYAKV---------TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           ++  + +  P+Y  +           R   EK  RE +   +    +             
Sbjct: 5   TAERVAQATPDYHALNAMLNLYDKAGRIQFEK-DREAVDAFFAAHVRPHSVTFSSQQAR- 62

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
               + EG     +        ++ L             +LG    Y  Y L   +G R 
Sbjct: 63  LETLVREGYYDESVLNRYPRAFVIDLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY 122

Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
            E  +   + VA+ LA  +   E  A +  + + +  F  +TPT  N G +   +L SCF
Sbjct: 123 LEDFEDRVVMVALTLARGD---ETLARQLTDEILAGRFQPATPTFLNCGKQQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNAALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRL 299

Query: 493 VTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             +NA   LFSP +V  ++            Y+     A   +    + I+A   ++++ 
Sbjct: 300 AKENAQMALFSPYDVERIYGKPFGDIAVSDLYDQLVADARVRK----KYINARDFFQRLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603
            + FE+G+P+I F+D  N  SP    G ++ SNLC+EI   +S+             +  
Sbjct: 356 EIQFESGYPYIMFEDTVNRASPV--AGRINMSNLCSEILQVNSASTYDDNLDYAQTGHDI 413

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    +  D      T+ TA+R L  V D+ +  ++   +  N    AIGLG M 
Sbjct: 414 SCNLGSLNIAHTMDSPDFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 473

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y SPE ++  +     I++HA++ S++LA+ER  A++ FK S +  G +
Sbjct: 474 LHGYLAREGIAYGSPEGLDFTNLYFYTITWHALNTSMKLARERGQAFAGFKQSRYASGEY 533

Query: 722 -----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                  D      +VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+
Sbjct: 534 FSQYLQGDWQPKTEKVRALFARSGITLPTREMWRQLRDDVMRYGIYNQNLQAVPPTGSIS 593

Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++    +G       F+ N                        
Sbjct: 594 YINHATSSIHPIVSKVEIRKEGKTGRVYYPAPFMTN------------------------ 629

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  +   ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     
Sbjct: 630 -------ENLDMYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINRAQIY 682

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 683 AWRKGIKTLYYIR 695


>gi|254468285|ref|ZP_05081691.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [beta proteobacterium KB13]
 gi|207087095|gb|EDZ64378.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [beta proteobacterium KB13]
          Length = 719

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 142/644 (22%), Positives = 258/644 (40%), Gaps = 59/644 (9%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ + E  Q  + RVA  LA  E   +K   E +        + +     N
Sbjct: 31  KKYRLKKKDGNYVDETIQDTYERVAEALADVEPSNKKEWKENFLWALQHGAIPAGRITSN 90

Query: 361 SGTRHPQL----SSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           +G +  +      +C ++  V D +  I   + E  +  K   G+G +++ +R  GA + 
Sbjct: 91  AGAKEHKPATSTINCTVSGAVQDSMTDILDKVHEAGLTLKAGCGIGYEFSTLRPKGAFVA 150

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
           G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+  ++    +  R
Sbjct: 151 GAGAYTSGPLSFMDIYDRMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKR----EDGR 206

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDLYGKEF--EIAYE 523
               N +  I   FM+ V  ++ W L  P           +  D      +++  +  Y 
Sbjct: 207 LRQFNLSCLITKEFMEAVKSDSDWKLAFPVTEKEAKQDNLDFKDSEKTVWRDWPVKEKYI 266

Query: 524 NYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
             E   D G++  KV+  I A  LW  ++   ++   P     D  N  +       + +
Sbjct: 267 VKESGKDAGKVACKVYSTIKAKRLWDVIMASTYDYAEPGFILIDRVNEMNNNWFCENIRA 326

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVI 636
           +N C E  L     E   C LGS+NL     N       FD+D+    +    R+LDNV+
Sbjct: 327 TNPCGEQPLP----EYGACLLGSVNLTMFVKNPFTDDAYFDWDEYKKVVSIFTRMLDNVV 382

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           +IN   + K +      R  G+G +G  S L ++ I Y  PE+++  +E    ++     
Sbjct: 383 EINGLPLGKQRDEIMQKRRHGMGYLGLGSTLTMMKIKYGDPESIKFTEEVTRILAEEGWK 442

Query: 697 ASVELAQERGAYSSFKG-------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---W 746
             +ELA+E+G+    +         L  +     D I +  +V  ++ M + S+      
Sbjct: 443 VGIELAKEKGSAPIMEELFEITEQMLQMRPEMKADGIKVGDKVAGKVLMGKYSKYMQQFP 502

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM---SGDFTV 801
           +EL+  +   G+R S+  +IAPT TI+       S  I+PS+ + Y ++ +         
Sbjct: 503 EELRNEIAENGVRFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVIREGKKTKEK 562

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V+ F    L  R L ++  +   +  D          + L      +  I     ++  +
Sbjct: 563 VDVFSFELLAYRSLINDKAMPFSEKED----------EVLPDYFIDSSTIKTKNHVDIQA 612

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
             QKWID + S  + +  +   +    IY  A+  GLK     R
Sbjct: 613 AAQKWIDSSISKTINVPTDYDFEDFKEIYMYAYEKGLKGCTTFR 656


>gi|229493417|ref|ZP_04387206.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus
           erythropolis SK121]
 gi|229319733|gb|EEN85565.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus
           erythropolis SK121]
          Length = 727

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 173/680 (25%), Positives = 287/680 (42%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +EE      + +      + +L +    ++     +LG    Y  Y L   +G
Sbjct: 73  DEKLDYLVEENYYEPEVLDQYSRTFVKFLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 132

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA      E  AVE  + + +  F  +TPT  NSG +   +  
Sbjct: 133 KRYLERFEDRVCMVALTLAAG---NEDLAVELVDEIIAGRFQPATPTFLNSGKKQRGEPV 189

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T VR  GA I     +S GVIP +K
Sbjct: 190 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 249

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 250 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 309

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548
            +   +N    LFSP    D+  +YG  F     + +      + ++ + KI A   ++ 
Sbjct: 310 FELAKKNEDMYLFSP---YDVERIYGVPFSDINVSEKYYEMVDDKRIRKSKIKAREFFQT 366

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               S   +
Sbjct: 367 VAELQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYSKVGK 424

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D  + +++   ++ N+   A
Sbjct: 425 DISCNLGSLNIAKT-----MDSPDFAKTIEVSIRGLTAVSDQTHIYSVPSIEQGNNDSHA 479

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS ++A ERG+Y   F  S
Sbjct: 480 IGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGSYFKGFPES 539

Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F         E           +  ++  ++  W ELK  V+  G+ N N  A+
Sbjct: 540 KYASGEFFDKYTDQAWEPATDKVRGLFADAKLHIPTQDDWRELKASVQKHGIYNQNLQAV 599

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N+                
Sbjct: 600 PPTGSISYINYSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 643

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    ++++ +   + +DQ  SL L+  +  + + 
Sbjct: 644 ---------------NLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRD 688

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 689 INKAQIYAWRKGIKTLYYIR 708


>gi|170288626|ref|YP_001738864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga sp. RQ2]
 gi|281412178|ref|YP_003346257.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga naphthophila RKU-10]
 gi|170176129|gb|ACB09181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga sp. RQ2]
 gi|281373281|gb|ADA66843.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga naphthophila RKU-10]
          Length = 827

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 152/628 (24%), Positives = 263/628 (41%), Gaps = 87/628 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN---------------------------SGTRHPQL 368
           ++    F+ +L +  F+ ++PTLFN                           S      L
Sbjct: 72  KEWEDTFFRVLKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHML 131

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           S+CF+  V D +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+
Sbjct: 132 SACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFM 191

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPD 487
            V N     V QG +R+GA+   L   H D+EEF+D +K    +      +++       
Sbjct: 192 HVFNSAISVVKQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGF---- 247

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIKVFRKISAVALW 546
             M +                             YE   E +       + +K+    L+
Sbjct: 248 -PMDKKEIL-----------------------KLYEEDGELELSHPRSTIRKKVKIRELF 283

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           RK+ T  +++G P + F    N   P      ++S+N C EI       +   CNLGSI+
Sbjct: 284 RKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSID 339

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +   + N   D + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   
Sbjct: 340 VAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADL 399

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+ L IPY S EA + A   M FI+  A   S EL +E+G +   + S +          
Sbjct: 400 LYKLEIPYNSQEARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRY---------- 449

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +     AM  ++         ++     RN   + IAPT +I+NI   S  ++P++
Sbjct: 450 -RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNF 508

Query: 787 QNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKY---HDGSIGNIERIP 838
              Y +     D        VN  L  +L      +  ++  ++      GS+ +I  +P
Sbjct: 509 LLAYTRFVTKEDGTKEPLLYVNQVLREKL------NPEILKKIEKELIEKGSLKDIPDVP 562

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
           + +KK+   A +IDPM  +      Q+++D   S  + +    +   +  +Y +A    +
Sbjct: 563 EKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNV 622

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +     R  S  +   +           
Sbjct: 623 RGITVYRDGSLQTQVLTKALKTPEAPKV 650


>gi|23335915|ref|ZP_00121146.1| COG0209: Ribonucleotide reductase, alpha subunit [Bifidobacterium
           longum DJO10A]
 gi|23465252|ref|NP_695855.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum NCC2705]
 gi|189440324|ref|YP_001955405.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum DJO10A]
 gi|227547059|ref|ZP_03977108.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|296455121|ref|YP_003662265.1| ribonucleoside-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. longum JDM301]
 gi|312133658|ref|YP_004000997.1| nrda [Bifidobacterium longum subsp. longum BBMN68]
 gi|322690139|ref|YP_004209873.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           longum subsp. infantis 157F]
 gi|23325883|gb|AAN24491.1| NrdE [Bifidobacterium longum NCC2705]
 gi|189428759|gb|ACD98907.1| Ribonucleotide reductase alpha subunit [Bifidobacterium longum
           DJO10A]
 gi|227212476|gb|EEI80365.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517760|emb|CBK71376.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|296184553|gb|ADH01435.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311772920|gb|ADQ02408.1| NrdA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320461475|dbj|BAJ72095.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 731

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 162/739 (21%), Positives = 283/739 (38%), Gaps = 78/739 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L       +  ++      Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASTAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               I        +        L  +   ++        +LG    Y  Y L     R+ 
Sbjct: 75  LEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
           + + F  R A          E++A+E+ + + +  F  +TPT  N G     +  SCFL 
Sbjct: 135 L-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D+
Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDS 253

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   
Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           Q A   LFSP    D+  +YGK F              + ++ +  I A   +  +  + 
Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           FE+G+P+I F+D  N  +P             +  V   +   E    +       CNLG
Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+             L  T+ TA+R L +V +  + + +   +++N    AIGLG M 
Sbjct: 431 SLNIAKAMDG------GLGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S + +   
Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544

Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767
             +      + R  L                   +   W+ L+  +   G+ N N  A+ 
Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQAVP 604

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G      +++ N+                 
Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
           + G               +  A+EI    ++++ +   + +DQ  SL L+  +  + + L
Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712


>gi|15642893|ref|NP_227934.1| ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8]
 gi|4980610|gb|AAD35212.1|AE001698_1 ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8]
 gi|2440216|emb|CAA73377.1| ribonucleotide reductase [Thermotoga maritima MSB8]
          Length = 827

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 147/576 (25%), Positives = 247/576 (42%), Gaps = 54/576 (9%)

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           ++ S      LS+CF+  V D +  IF A++E A++ K  GG+G++++ +R  G+ + GT
Sbjct: 121 IYRSRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGT 180

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRT 476
           +GK+ G + F+ V N     V QG +R+GA+   L   H D+EEF+D +K    +     
Sbjct: 181 HGKASGPVSFMHVFNSAISVVKQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNF 240

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIK 535
            +++         M +                             YE   E +       
Sbjct: 241 FNLSVGF-----PMDKKEIL-----------------------KLYEEDGELELSHPRST 272

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           + +K+    L+RK+ T  +++G P + F    N   P      ++S+N C EI       
Sbjct: 273 IRKKVKIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLS 328

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +   CNLGSI++   + N   D + L   ++ AVR LDNVID+N   I+K  K+    R 
Sbjct: 329 DYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRR 388

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGF   L+ L IPY S EA + A   M FI+ HA   S EL +E+G +   + S 
Sbjct: 389 LGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISR 448

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           +              +     AM  ++         ++     RN   + IAPT +I+NI
Sbjct: 449 Y-----------RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNI 497

Query: 776 CGVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
              S  ++P++   Y +     D        VN  L  +L    L     I       GS
Sbjct: 498 ADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPEIL---KRIEKELIEKGS 554

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
           + +I  +P+ +KK+   A +IDPM  +      Q+++D   S  + +    +   +  +Y
Sbjct: 555 LKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVY 614

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
            +A    ++     R  S  +   +           
Sbjct: 615 LEALRTNVRGITVYRDGSLQTQVLTKALKTPEAPKV 650


>gi|169630494|ref|YP_001704143.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           abscessus ATCC 19977]
 gi|169242461|emb|CAM63489.1| Ribonucleoside-diphosphate reductase alpha subunit [Mycobacterium
           abscessus]
          Length = 712

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 179/746 (23%), Positives = 304/746 (40%), Gaps = 91/746 (12%)

Query: 192 GLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           G +  +L+   + +   L + E     +     AR    +   +     + + +K  +  
Sbjct: 6   GSAHGELDYHALNAMLNLYDAEGKIQFDKDAAAARQYFLQHVNQNTVFFHNQDEKLDY-- 63

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
                       IE+    R + +      +  L +    ++     +LG    Y  Y L
Sbjct: 64  -----------LIEKEYYEREVLDQYSRNFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTL 112

Query: 308 H-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
              +G R  E  +   + VA+ LA  +    + A +  + +    F  +TPT  NSG + 
Sbjct: 113 KTFDGKRYLERFEDRVVMVALTLAAGD---LQLAEKLVDEIIDGRFQPATPTFLNSGKKQ 169

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +  SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GV
Sbjct: 170 RGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGV 229

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 230 IPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVV 289

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISA 542
           IPD+  +   +N    LFSP    D+   YG  F      E Y    D G+I+  + I A
Sbjct: 290 IPDITFELAKKNEDMYLFSP---YDVERTYGVPFADINVTEKYYEMVDNGQIRKTK-IKA 345

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------ 590
              ++ +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI              
Sbjct: 346 REFFQTLAELQFESGYPYIMYEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLS 403

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKS 649
            +   +   CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ 
Sbjct: 404 YAKVGKDISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIWSVPSIEQG 458

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-Y 708
           N+   AIGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +
Sbjct: 459 NNDSHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVLYHALRASNRIAIERGTKF 518

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRN 760
             F  S +  G F       + E +         +  +   ++  W  LK+ V+  G+ N
Sbjct: 519 GGFDRSKYASGEFFDKYTDQVWEPKTEKVRQLFADAGIRIPTQDDWLRLKESVQQHGIYN 578

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEA 819
            N  A+ PT +I+ I   + SI P    + ++     G       +L N+          
Sbjct: 579 QNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKIGRAYYPAPYLTND---------- 628

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
                                  + +  A+EI    +I++ +   + +DQ  SL L+  +
Sbjct: 629 ---------------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKD 667

Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLR 904
             S + ++     AW  G+KT YY+R
Sbjct: 668 TASTRDVNKAQIYAWRKGIKTLYYIR 693


>gi|313801898|gb|EFS43132.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL110PA2]
          Length = 950

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +    +  V           
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +       +GK F +              KV   + A  L+ K+    +E   P + + 
Sbjct: 288 SDAFMAAVGHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623
           D  N      + G +++SN C+E      S + + CNL S+NLL     N+ FD +K   
Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E   K+    R +G+G     + L  L + Y S     +A
Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739
                 ++  +   S ELA   G Y  +  +                 +     ++ A+ 
Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             ++  WD++ K   T G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851
              +VN  +   LK    +       +  +   +GS+     + +   ++   A     I
Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            PM  +   +  Q ++  A S  + L E  + + +  +Y + W +GLK     R      
Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
              S  K  + +  A P            +P S
Sbjct: 696 QPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|309812682|ref|ZP_07706426.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dermacoccus sp. Ellin185]
 gi|308433377|gb|EFP57265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dermacoccus sp. Ellin185]
          Length = 975

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 124/614 (20%), Positives = 221/614 (35%), Gaps = 31/614 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385
           G    + + E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 110 GYFATDEDAEIFEHELTYALLHQVFSFNSPVWFNVGTASPQQVSACFILSVEDSMDSILN 169

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 170 WYKEEGFIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 228

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +    +  V           
Sbjct: 229 RAAKMVVLDVDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 288

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           ++      + G  F +          R   +V   + A  L+ K+    +E   P + + 
Sbjct: 289 NDEFMQAVVDGGSFGLR--------ARDTGEVIETVDARELFDKINKAAWECADPGVQYD 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
           D  N        G + +SN C+E      S + + CNL S+NLL     +  FD    A 
Sbjct: 341 DTINAWHTNPETGRITASNPCSEYM----SLDNSSCNLASLNLLKFLKEDDTFDAATFAK 396

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E   K+   +R +G+G     + L      Y S     +A
Sbjct: 397 VVELVITAMDISICFADFPTESIGKTTVDYRQLGIGYANLGALLMATGHGYDSDGGRALA 456

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
                 ++  A   S E+A   G Y+ +  +                E+     M   + 
Sbjct: 457 ASITSLLTGAAYKRSAEMAAVVGPYAGYAQNSQAHNRVMRKHRAANDELSSHKDMGAMAS 516

Query: 744 LP-------WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794
                    W ++    +  G RN+    +APT TI  +    +  I+P +  + + K  
Sbjct: 517 DIHALATKAWADVVTLGEKNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLV 576

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF--- 849
             G   +VN  +   LK+    DE + + +      G + +   +  +  +I   A    
Sbjct: 577 GGGSMQIVNQTIPRALKKLGYQDEQIEAIVEHIAEKGHVIDAPGLKPEHYEIFDCAMGAR 636

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I PM  +   +  Q ++  A S  + L E  S   +  ++ + W +GLK     R    
Sbjct: 637 AISPMGHVRMMAACQPFLSGAISKTVNLPETASVDDIAEVHLEGWKLGLKAIAVYRDNCK 696

Query: 909 TSVEKSTLKGVDGK 922
                S  K     
Sbjct: 697 VGQPLSDGKAEKKS 710


>gi|218547808|ref|YP_002381599.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ATCC 35469]
 gi|218355349|emb|CAQ87956.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 714

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 176/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         +  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDKTL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G R   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 AKQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+  AV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVEIAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V DI +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNRT-- 741
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL    +  
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSSIT 559

Query: 742 --SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|209551074|ref|YP_002282991.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536830|gb|ACI56765.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 734

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 185/739 (25%), Positives = 298/739 (40%), Gaps = 85/739 (11%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             L+   + +   L + E        R  L+K R        +   + T      L  + 
Sbjct: 32  EALDYHALNAMLNLYDDE-------GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKL 83

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313
                E   +  +L +   +F          Y R F F  +LG    Y  Y L   +G R
Sbjct: 84  DYLVTEGYYEQEVLDQYSFNFVRDLFDQA--YARKFRFPTFLGAFKYYTSYTLKTFDGKR 141

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +     VA+ LA  +   E  A +  + + S     +TPT  N+G +   +L SC
Sbjct: 142 YLERYEDRICMVALSLARGD---EALARDMVDEIISGRLQPATPTFLNAGKKQRGELVSC 198

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  V D++  I  ++     L+K  GG+    T +R   A I     +S G+IP +K+ 
Sbjct: 199 FLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREASAPIKQIENQSSGIIPVMKLL 258

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +
Sbjct: 259 EDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDISFE 318

Query: 492 RVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
               N    LFSP +V  ++            Y      A   +    +KI A   ++ +
Sbjct: 319 LARNNEDMYLFSPYDVERIYGVPFTEISVTEKYREMVADARISK----KKIKAREFFQVI 374

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI   S + E             
Sbjct: 375 AEIQFESGYPYIMFEDTVNRANPI--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKD 432

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D+ +  ++   +K N    AI
Sbjct: 433 ISCNLGSLNIAAA-----MDSADFGKTIETSIRALTAVSDMSHIASVPSIEKGNDESHAI 487

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HAI AS  LA ERG  +  F+ S 
Sbjct: 488 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSK 547

Query: 716 WDQGVFP-----IDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       +      +VR       +   ++  W  LK  V T G+ N N  A+ 
Sbjct: 548 YASGEYFDKYTEQEWQPATEKVRALFDNAGIPVPTQEDWLALKTAVMTSGLYNQNLQAVP 607

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       F+ N+                 
Sbjct: 608 PTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPFMTND----------------- 650

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                             +  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 651 --------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 696

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 697 NKAQIYAWKKGIKTIYYIR 715


>gi|322692091|ref|YP_004221661.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320456947|dbj|BAJ67569.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 731

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 162/739 (21%), Positives = 283/739 (38%), Gaps = 78/739 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L       +  ++      Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASAAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               I        +        L  +   ++        +LG    Y  Y L     R+ 
Sbjct: 75  LEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
           + + F  R A          E++A+E+ + + +  F  +TPT  N G     +  SCFL 
Sbjct: 135 L-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D+
Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDS 253

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   
Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           Q A   LFSP    D+  +YGK F              + ++ +  I A   +  +  + 
Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           FE+G+P+I F+D  N  +P             +  V   +   E    +       CNLG
Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+             L  T+ TA+R L +V +  + + +   +++N    AIGLG M 
Sbjct: 431 SLNIAKAMDG------GLGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S + +   
Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544

Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767
             +      + R  L                   +   W+ L+  +   G+ N N  A+ 
Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQAVP 604

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G      +++ N+                 
Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
           + G               +  A+EI    ++++ +   + +DQ  SL L+  +  + + L
Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712


>gi|148269941|ref|YP_001244401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga petrophila RKU-1]
 gi|147735485|gb|ABQ46825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga petrophila RKU-1]
          Length = 827

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 152/628 (24%), Positives = 263/628 (41%), Gaps = 87/628 (13%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN---------------------------SGTRHPQL 368
           ++    F+ +L +  F+ ++PTLFN                           S      L
Sbjct: 72  KEWEDTFFRVLKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHML 131

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           S+CF+  V D +  IF A++E A++ K  GG+G++++ +R  G+ + GT+GK+ G + F+
Sbjct: 132 SACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFM 191

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPD 487
            V N     V QG +R+GA+   L   H D+EEF+D +K    +      +++       
Sbjct: 192 HVFNSAISVVKQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGF---- 247

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIKVFRKISAVALW 546
             M +                             YE   E +       + +K+    L+
Sbjct: 248 -PMDKKEIL-----------------------KLYEEDGELELSHPRSTIRKKVKIRELF 283

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           RK+ T  +++G P + F    N   P      ++S+N C EI       +   CNLGSI+
Sbjct: 284 RKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSID 339

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +   + N   D + L   ++ AVR LDNVID+N   I+K  K+    R +GLG+MGF   
Sbjct: 340 VAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADL 399

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L+ L IPY S EA + A   M FI+  A   S EL +E+G +   + S +          
Sbjct: 400 LYKLEIPYNSQEARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRY---------- 449

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
               +     AM  ++         ++     RN   + IAPT +I+NI   S  ++P++
Sbjct: 450 -RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNF 508

Query: 787 QNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKY---HDGSIGNIERIP 838
              Y +     D        VN  L  +L      +  ++  ++      GS+ +I  +P
Sbjct: 509 LLAYTRFVTKEDGTKEPLLYVNQVLREKL------NPEILKKIEKELIEKGSLKDIPDVP 562

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
           + +KK+   A +IDPM  +      Q+++D   S  + +    +   +  +Y +A    +
Sbjct: 563 EKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNV 622

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +     R  S  +   +           
Sbjct: 623 RGITVYRDGSLQTQVLTKALKTPEAPKV 650


>gi|255025076|ref|ZP_05297062.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J2-003]
          Length = 624

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 199/621 (32%), Positives = 306/621 (49%), Gaps = 40/621 (6%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I  +    +   P +    AR  L KL ++     +         +    Y        E
Sbjct: 70  IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320
            G+ +  + ++    DL+     +  E+D  F Y GL +L  RY       +  E+PQ  
Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ +A+ L   E   ++ K   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D
Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L GI+ +  + A ++K+ GG+G     VR  GA I G  G S GVIP++K  N+TAV+V
Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+RKGA+  YL+ +H D+E FLDLR N GD R R HD+ TA  IPD+FM+ V +   
Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364

Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W LF P EV      Y ++F      E  +     +    E    + + A+ + ++++  
Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMS 424

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595
             ETG+P++ ++D  N  +P +H G+V+SSNLCTEI  N S                   
Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484

Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
             +  VCNL S+NL         +   L   I   VR+LDNVID+N   + +A  +N  +
Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R+IGLG  G+   L L +I + S EA + ADE  E I++ AI AS +LAQE+GAY  FKG
Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601

Query: 714 SLWDQGVFPIDSIGLLAEVRD 734
           S W+ G +         E ++
Sbjct: 602 SDWNTGEYFARRNYNSPEWQE 622


>gi|197104081|ref|YP_002129458.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum
           HLK1]
 gi|196477501|gb|ACG77029.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum
           HLK1]
          Length = 745

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 150/623 (24%), Positives = 243/623 (39%), Gaps = 86/623 (13%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
              F   +G+     +A + RVA  +A  E    +      F + L  F F+ +   L  
Sbjct: 15  KYRFAQPDGAGDGSVEATWARVAEAIARAESPKLRRAWRERFEDALGDFQFLPAGRILAG 74

Query: 361 SGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+   +PDDL GIF  +QE A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARTVTLFNCFVMGAIPDDLEGIFRHVQEAAVTMQQGGGVGMDFSTIRPSGAPVRGVG 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G+R+GA+   L   H D+E F+D ++    D  R  +
Sbjct: 135 ADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKR----DGARLRN 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D F++ + ++  W L                               +  V R
Sbjct: 191 FNLSVLVTDAFLETLERDGEWPLVF-----------------------------DGVVHR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LWR+++   ++   P + F D  N R+   H   + +SN C E  L        
Sbjct: 222 TVRAADLWRRLMQGTYDCAEPGVIFIDRVNARNNLAHCETITASNPCGEQMLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL              D D+LA+  RTAVR LDNVID++ + +   +      
Sbjct: 278 ACLLGSINLARLVPAPFEPGAELDEDRLAALTRTAVRFLDNVIDVSRYPLPAQEAEAKAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL    +PY    + E+    +E I   A  AS ELA E+GA+  +  
Sbjct: 338 RRIGLGVTGLADALIFCGVPYGGERSAELTRRWLEVIKREAYRASAELAAEKGAFPLY-- 395

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                     D + L       L           E ++ +   G+RN    +IAPT T +
Sbjct: 396 ----------DPVMLETPNLKGLD---------PETRELIARHGLRNGCLTSIAPTGTTS 436

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            + G  S  I+P +   Y +                  +      E  + D         
Sbjct: 437 LLAGNVSSGIEPVFAFAYTRKVR---------------QPDGSSREEAVEDYALAVW--K 479

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
            +    +    I  TA  + P   +   +  Q+ +D + S  +    + +      +Y  
Sbjct: 480 RLHGQAEPPADIFVTAQTLTPADHLRIQAAAQEVVDSSISKTVNCPEDIAFDAFSDVYLD 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKS 914
            W  G K     R  + T    S
Sbjct: 540 GWRRGCKGLTTYRPNAVTGSVLS 562


>gi|310816081|ref|YP_003964045.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308754816|gb|ADO42745.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 718

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 173/689 (25%), Positives = 285/689 (41%), Gaps = 76/689 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
            E     ++EG     + E       + ++        R   F  LG    Y  Y L   
Sbjct: 64  AEKLDYLVDEGYYEAEVLEQYSTPFKESIWAQAWAHKFRFSTF--LGAFKYYTSYTLKTR 121

Query: 311 --GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
                +E  +   + VA+ LA      E  A    + + +  F  +TPT  N+G +   +
Sbjct: 122 DGNRYLERFEDRVVMVALALA---RGNEVLARRIVDEVLTGRFQPATPTFLNAGKKSRGE 178

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL    D++  I   +     L+K  GG+    + +R  GA I G   +S GVIP 
Sbjct: 179 LVSCFLLRFEDNMESIGRGINSALQLSKRGGGVALLLSNLREAGAPIKGIANQSSGVIPV 238

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 239 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPD 298

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
           +  +    NA   +FSP +V     + GK F     +        + ++ +  + A   +
Sbjct: 299 ITFELAKNNADMYMFSPHDV---EKVTGKAFGDISISEHYYDFVDDPRIHKTKMKARQFF 355

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595
           + +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S             
Sbjct: 356 QTLAEVQFESGYPYILFEDTANRANPI--DGRINMSNLCSEILQVNSPSVLNEDLTFADI 413

Query: 596 -ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTH 653
                CNLGS+N+         D   +   + TA+R L  V +++   ++   +  N   
Sbjct: 414 GSDISCNLGSLNVAKV-----IDNGDIGVAVETAIRALTAVSEMSAIDSVPSVRAGNDRS 468

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFK 712
            AIGLG M     L    I Y SPEA++        ++FHAI+AS ++A E    +  F+
Sbjct: 469 HAIGLGQMNLHGFLARERIHYDSPEALDFTRAYFAAVAFHAINASNKIAVERNETFDGFE 528

Query: 713 GSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            S +  G F    +          + EV ++  +   S   W  LK+RV   G+ N N  
Sbjct: 529 KSRYADGSFFDMYLEESFAPTSDKVREVLEKFGVALPSVADWGALKERVMKDGLFNRNLQ 588

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823
           AI PT +I+ I   + SI P    + ++     G       +L N               
Sbjct: 589 AIPPTGSISYINHATASIHPVAAKVEIRKEGKIGRVYYPAPYLTN--------------- 633

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
                           +  + +  A+EI P  +I+  +   + +DQ  SL L+  +  + 
Sbjct: 634 ----------------ENAEYYRDAYEIGPEAIIDLYAEATRHVDQGLSLTLFFPDTATT 677

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           + ++     AW  G+KT YY+R R A   
Sbjct: 678 RDINKAQIYAWKKGIKTIYYIRLRQAALA 706


>gi|326333208|ref|ZP_08199455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioidaceae bacterium Broad-1]
 gi|325948852|gb|EGD40945.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nocardioidaceae bacterium Broad-1]
          Length = 976

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 128/614 (20%), Positives = 239/614 (38%), Gaps = 27/614 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E + +    E   LL + HF  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 110 GYFASEADADLFGRELTWLLVNQHFAFNSPVWFNVGTESPQQVSACFILSVDDSMDSILN 169

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 170 WYKEEGLIFKGGSGAGLNLSRIRSSKELLKSSGGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +    D  R   D      +           +     + 
Sbjct: 230 RAAKMVVLDVDHPDIEEFVETKAREEDKIRALRDAGFDMDL------GGKDISSVQYQNA 283

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    + D + +  E   +   R    GE  V  +I A  L+RK+    +E   P + + 
Sbjct: 284 NNSVRVSDEFMRAVEEGKKFGLRARTTGE--VIEEIDARELFRKISIAAWECADPGLQYD 341

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
           D  N        G +  SN C+E      S + + CNL S+NLL    ++  FD  +   
Sbjct: 342 DTINDWHTNPETGRITGSNPCSEYM----SLDNSSCNLASLNLLKFLKDDDTFDAVRFQQ 397

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
                   +D  I       E   ++   +R +G+G     + L  + + Y S     +A
Sbjct: 398 ACEIVFTAMDISICFADFPTEAIGETTRDYRQLGIGYANLGALLMAMGLGYDSEGGRTMA 457

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--- 740
                 ++      S ELA   G Y+ +  +                 VR    ++R   
Sbjct: 458 AAITSLMTGAGYKRSAELAGVVGPYAGYARNAEAHQRVMRKHQAANDAVRSINPVDRNII 517

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             +   W ++ +  K  G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 518 DAATRVWSDVVEIGKVNGFRNAQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 577

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L +     E + + + Y    G + +   +  +  ++  TA     + 
Sbjct: 578 SMQIVNQVIPRALTKLGYQAEQIEAIVAYIAEHGHVVDAPGLRQEHYEVFDTAMGKRALQ 637

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q ++  A S  + L E  + + ++ +Y ++W +GLK T   R       
Sbjct: 638 PMGHVRMMAATQPFLSGAISKTVNLPETATVEDIEQVYMESWKLGLKATAIYRDNCKVGQ 697

Query: 912 EKSTLKGVDGKLNA 925
             +  K  + K + 
Sbjct: 698 PLADGKSENAKKDQ 711


>gi|260599070|ref|YP_003211641.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter
           turicensis z3032]
 gi|260218247|emb|CBA33171.1| Ribonucleoside-diphosphate reductase 2 subunit alpha [Cronobacter
           turicensis z3032]
          Length = 716

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 179/721 (24%), Positives = 290/721 (40%), Gaps = 69/721 (9%)

Query: 214 PNYAKVTARFLLE----KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           P+Y  + A   L     +++ E      +    A        +P+   R      +    
Sbjct: 16  PDYHALNAMLNLYDADGRIQFEKDREAVEAFMAAHVQPRSVTFPDTHARLAYLVSEGYYD 75

Query: 270 HESMMDFDLVYLANDLKY-ERD-FAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325
              +  +D  + A       RD F F  +LG    Y  Y L   +G R    + F  R  
Sbjct: 76  ENVLKRYDPDFAAGLFDEAHRDGFTFKTFLGAWKFYTSYTLKTFDGKRY--LEHFPDRAC 133

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           M         E  A +    + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 134 MVALTLACGDETLARQILKEILSGRFQPATPTFLNGGKQQRGELVSCFLLRIEDNMESIG 193

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 194 RAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 253

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    NA   LFSP
Sbjct: 254 QGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKANAQMALFSP 313

Query: 505 DEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            +V  ++            Y          E    R ISA  L++++  + FE+G+P+I 
Sbjct: 314 YDVEHIYGKPFGDISVSEMYTQLVED----ERIRKRYISARELFQRLAEIQFESGYPYIM 369

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQ 615
           F+D  N  +P    G ++ SNLC+EI   +S+             +  S NL +    + 
Sbjct: 370 FEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCNLGSLNIAHT 427

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I Y
Sbjct: 428 MDSPDFGRTVETAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAY 487

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            SPE ++  +     +++HA++ S+ LA+ER   +  F+ S +  G +    +      R
Sbjct: 488 GSPEGLDFTNLYFYTVTWHALNTSMMLARERGERFEGFEASRYASGEYFDKYLTQTWTPR 547

Query: 734 DELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                   +R          W +L+  V   G+ N N  A+ PT +I+ I   + SI P 
Sbjct: 548 TARVAELFARAGITLPTPEMWRQLRDDVMRHGLYNRNLQAVPPTGSISYINHATSSIHPI 607

Query: 786 YQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + ++     G       F+ NE   R                               
Sbjct: 608 VSKIEIRKEGKIGRVYYPAPFMTNENLAR------------------------------- 636

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+
Sbjct: 637 YQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYI 696

Query: 904 R 904
           R
Sbjct: 697 R 697


>gi|301019060|ref|ZP_07183271.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
 gi|300399413|gb|EFJ82951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 69-1]
          Length = 701

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 176/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M   +     E  
Sbjct: 74  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALMLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|312140540|ref|YP_004007876.1| ribonucleoside-diphosphate reductase nrde [Rhodococcus equi 103S]
 gi|311889879|emb|CBH49196.1| ribonucleoside-diphosphate reductase NrdE [Rhodococcus equi 103S]
          Length = 701

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 171/675 (25%), Positives = 286/675 (42%), Gaps = 62/675 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + E    R + +      + +L +    ++     +LG    Y  Y L   +G
Sbjct: 47  DEKLDYLVRENYYEREVLDQYSRNFVKWLIDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 106

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A E  + + +  F  +TPT  NSG +   +  
Sbjct: 107 KRYLERFEDRVCMVALTLAAGD---ETLATELVDEIIAGRFQPATPTFLNSGKKQRGEPV 163

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T VR  GA I     +S GVIP +K
Sbjct: 164 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 223

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 224 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 283

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ + KI A   ++ 
Sbjct: 284 FELAKKNEDMYLFSP---YDVERIYGVPFADINVTEKYHEMVDDKRIRKSKIKAREFFQT 340

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCN 601
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI       T N     + V  
Sbjct: 341 LAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSTFNDDLSYSHVGK 398

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D    A TI T++R L  V D  + +++   ++ N+   AIGLG 
Sbjct: 399 DISCNLGSLNIALTMDSPDFAKTIETSIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQ 458

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y S E ++  +     + +HAI AS  +A+ERG  +  F  S +  G
Sbjct: 459 MNLHGYLARERIFYGSEEGIDFTNIYFYSVVYHAIRASNLIAKERGTHFKGFPESDYASG 518

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +       + E +         +  ++  ++  W ELK  V+  G+ N N  A+ PT +
Sbjct: 519 KYFDKYTDQVWEPKTEKVRQLFADAGIHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGS 578

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       +L N+                     
Sbjct: 579 ISYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLTND--------------------- 617

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                       + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 618 ----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQ 667

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 668 IYAWRKGIKTLYYIR 682


>gi|251792577|ref|YP_003007303.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533970|gb|ACS97216.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           aphrophilus NJ8700]
          Length = 562

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 158/587 (26%), Positives = 252/587 (42%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  ++  S+P   N G       SCF + + D +  I   + E  +++K
Sbjct: 58  EGYAEKFYHYMARGYYSLSSPIWSNFGLDRGLSISCFGSYIGDSINAIMSTVAEIGVMSK 117

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G++I   NGKS G   F K+   T   ++QG  RKG    Y++  
Sbjct: 118 LGGGTSGYFGDIRPRGSNI-TNNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 176

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+LD+      +      M     +   +++ +     +                
Sbjct: 177 HGDIEEWLDIHT----EGNPIQLMYYGVCVSHEWLESMKAGDPYK--------------- 217

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        +W K+L    ETG P+I FKD  N   P  +
Sbjct: 218 ---------------------------RQIWAKLLQRKTETGIPYIFFKDNANAGRPDVY 250

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                ++H+SNLC+EI L SS +E+ VC L S+NLL       FD  K           L
Sbjct: 251 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 304

Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D V+        N   +++A K    HRA+GLG++G+ S L   ++ + S EA++  +  
Sbjct: 305 DIVMSEFIAQSANIQFMDRANKFARRHRALGLGVLGWHSYLQSKNMAFDSFEAMQHNNII 364

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + +    + AS ELAQ  G     KG                                 
Sbjct: 365 FKLLQEKTLKASKELAQRFGEPEILKG--------------------------------- 391

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                     G RN+  M++APT + + I G VS SI+P   N YVK          N F
Sbjct: 392 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 442

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   LK++ L  + +   +  +DGS+ ++  + +D K++  T  EI  + +I+ A++RQK
Sbjct: 443 LEALLKRKGLDRDDIWESILLNDGSVQHLTELTEDEKEVFKTFSEISQLSVIQQAAQRQK 502

Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QS+N+ +   +  K L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 503 YIDQGQSVNIMVHPATPAKDLNQLYLTAEELGLKSIYYQYSMSAAQV 549


>gi|254505919|ref|ZP_05118064.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
 gi|219551142|gb|EED28122.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           parahaemolyticus 16]
          Length = 710

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 181/742 (24%), Positives = 305/742 (41%), Gaps = 83/742 (11%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S   L+   + +   L++++ N      R    +   +     +        H +     
Sbjct: 6   STEPLDYHALNAMLNLLDEKGNIQLDADRQAARQFFLQ-----HVNQNTFFFHNLA---- 56

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     + EG   + + E      L  + +     +     +LG    +  Y L   +G 
Sbjct: 57  EKLDYLVNEGYYEKEVLEQYDREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGK 116

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M         +  A++    + S  F  +TPT  NSG +   +L S
Sbjct: 117 RYLERFED---RVVMTALTLARGDKAFALDLMQEIISQRFQPATPTFINSGKKSRGELIS 173

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+  +  L++  GG+    + +R  GA I G   +S GV+P +K+
Sbjct: 174 CFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKL 233

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+ +
Sbjct: 234 LEDSFSYANQLGARQGAGAVYLNAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDITL 293

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548
           +   QN    LFSP +V     +YG  F      E Y    D   I+  + ISA  L++ 
Sbjct: 294 ELAKQNKDMYLFSPHDV---ERVYGVPFSEISVSEKYYEMVDDPRIRKSK-ISARGLFQT 349

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 350 LAEIQFESGYPYLMFEDTVNAANPI--KGRINMSNLCSEILQVNDASHFNDDLSYAHLGR 407

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655
              CNLGSIN+         D   LA T+  ++R L+ V +++   ++   ++ N    A
Sbjct: 408 DISCNLGSINIAKA-----LDGGHLAHTVEVSIRALNAVSEMSAIDSVPSIRRGNDESHA 462

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S EAV+          +H ++AS +LAQE+   +  F+ S
Sbjct: 463 IGLGQMNLHGFLAREQIHYDSEEAVDFTRAYFATTLYHCLTASNKLAQEKQQVFVGFEHS 522

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F    +      R        + L M   S   W +L+ +V   G+ N N  AI
Sbjct: 523 QYATGEFFAKYLQQDYSPRTGIVAALFERLDMQVPSIDDWQQLQSKVMESGLYNRNLQAI 582

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N+                
Sbjct: 583 PPTGSISYINDATASIHPVTAKVEIRKEGKIGRVYFPAPYLSND---------------- 626

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            +    A++I P  +I+  +   + +DQ  SL L+  +  + + 
Sbjct: 627 ---------------NLEYFKDAYDIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRD 671

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           ++     AW   +KT YY+R R
Sbjct: 672 INKAQIYAWKKKIKTLYYIRMR 693


>gi|225628772|ref|ZP_03786806.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti
           str. Cudo]
 gi|260167085|ref|ZP_05753896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           F5/99]
 gi|261756479|ref|ZP_06000188.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp.
           F5/99]
 gi|225616618|gb|EEH13666.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti
           str. Cudo]
 gi|261736463|gb|EEY24459.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp.
           F5/99]
          Length = 738

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 180/758 (23%), Positives = 294/758 (38%), Gaps = 109/758 (14%)

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
                    N+YD   +  L+     ++R    +  N+  V        LR +       
Sbjct: 39  DYHALNAMLNLYDEDGKIQLDCDR-QAARQYFLQHVNWNTV----FFHNLREK------- 86

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAF-EYL 296
                                + EG   + + +    +F          Y R F F  +L
Sbjct: 87  -----------------LDYLVAEGYYEQTVLDQYSFNFVRDLFDEA--YARKFRFPTFL 127

Query: 297 GLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
           G    Y  Y L   +G R  E  +    RV M         E+ A +    + S  +  +
Sbjct: 128 GAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDEQLARDLVEEIISGRYQPA 184

Query: 355 TPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           TPT  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA 
Sbjct: 185 TPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAP 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I     +S G+IP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++
Sbjct: 245 IKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEK 304

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADR 531
            R   ++    IPD+  +    N    LFSP +V  ++   L        Y      A  
Sbjct: 305 IRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPLTEISVTEKYREMVNDAQI 364

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC------ 585
            +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC      
Sbjct: 365 AK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI--DGRITMSNLCSEILQV 418

Query: 586 ------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
                  E        +   CNLGS+N+ A       D      TI T++R L  V D+ 
Sbjct: 419 SEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDFGKTIETSIRALTAVSDMS 473

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +    + N    AIGLG M     L    I Y S E V+  +     +++HA+ AS
Sbjct: 474 HIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRAS 533

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT---------SRLPWDE 748
             +A E   ++  F+ S +  G +  D     A       + R          ++  W  
Sbjct: 534 NRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCA 592

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLV 807
           LKK V   G+ N N  A+ PT +I+ I   + SI P    + ++     G      +F+ 
Sbjct: 593 LKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMT 652

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                 + +  A+EI P  +I++ +   + +
Sbjct: 653 ND-------------------------------NLEYYQDAYEIGPEKIIDTYAAATQHV 681

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 682 DQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 719


>gi|260427754|ref|ZP_05781733.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella
           sp. SE45]
 gi|260422246|gb|EEX15497.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella
           sp. SE45]
          Length = 707

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 183/740 (24%), Positives = 304/740 (41%), Gaps = 78/740 (10%)

Query: 188 NMYDGLSESDLETAL-IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
            + DGL    L   L ++ +   I  + +  ++ AR    +   +     +   +K  + 
Sbjct: 4   RLTDGLDYHALNAMLNLYDAEGRIRFDAD--RMAARQYFLQHVNQNTVFFHSLDEKLDY- 60

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305
                        +EEG     + ++     L  + +   ++R F F  +LG    Y  Y
Sbjct: 61  ------------LVEEGYYEAEVLDAYPRAFLHAIWDAA-FKRKFRFPTFLGAFKYYTSY 107

Query: 306 FLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
            L   +G R  E  +   + VA+ LA  +       +E    + +  F  +TPT  N+G 
Sbjct: 108 TLKTRDGKRFLERYEDRVVMVALTLARGDQALAMSFME---EIVTGRFQPATPTFLNAGK 164

Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           +   +L SCFL  + D++  I   +     L+K  GG+    T +R  GA I G   +S 
Sbjct: 165 KSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSS 224

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++  
Sbjct: 225 GVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLG 284

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQADRGEIKVFRKIS 541
             IPD+  +   +N    LFSP +V     +YG  F          +    +    +KI+
Sbjct: 285 VVIPDVTFELAKRNEEMYLFSPHDV---EKVYGVPFSEISVTEKYAEMVADKHIRKKKIN 341

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A A ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   + + E     
Sbjct: 342 ARAFFQTLAEIQFESGYPYIMFEDTVNRMNPI--AGRITMSNLCSEILQVNEASEFNEDL 399

Query: 602 L-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTH 653
                    S NL +       D     +TI TA+R L  V ++ +  ++   +K N   
Sbjct: 400 SYSRMGTDISCNLGSLNIARTMDGPDFGATIETAIRALTAVSEMSSIESVPSIRKGNDES 459

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712
            AIGLG M     L   H+ Y S E +E        +++HA+ AS  LA+ER   +  F 
Sbjct: 460 HAIGLGQMNLHGYLAREHVHYGSAEGIEFTSVYFAAVAYHALRASCALAKERGETFKGFA 519

Query: 713 GSLWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            S +  G F            +         +   +R  W  LK  V   G+ N N  A+
Sbjct: 520 DSEYASGAFFDKYTSRDWLPENARVAELFADVTLPTRDDWAALKADVMAHGLYNRNLQAV 579

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       F+ N                 
Sbjct: 580 PPTGSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAPFMSN----------------- 622

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                         +  + +  A+EI P  LI++ +   + +DQ  SL L+   E + + 
Sbjct: 623 --------------ENLEYYRDAYEIGPEALIDTYAAATEHVDQGLSLTLFFPAEATTRD 668

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 669 INRAQIYAWKKGIKTIYYVR 688


>gi|322515074|ref|ZP_08068082.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118954|gb|EFX91131.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 554

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 156/587 (26%), Positives = 250/587 (42%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 50  EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 110 IGGGTSAYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L SS++E+ VC L S+NLL       FD  K           L
Sbjct: 243 KDKNMTVHASNLCTEIMLPSSNDESFVCCLSSMNLL------YFDEWKDTEAPEVLTYFL 296

Query: 633 DNVIDINCHTIEKA------KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D V+       +         +    HRA+GLG++G+ S L   +I + S +A++  +  
Sbjct: 297 DVVMSEFIEKSKDMPFLDRAHRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNLI 356

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + +    + AS ELA+  G     KG                                 
Sbjct: 357 FKTLQEKTLKASQELAKRFGEPEILKG--------------------------------- 383

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                     G RN+  M+IAPT + + I G VS S++P   N YVK          N F
Sbjct: 384 ---------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPF 434

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++ L  E +   + ++DGS+ ++E++ D+ K++  T  EI  + +I+ A++RQK
Sbjct: 435 LEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQK 494

Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QS+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 495 YIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541


>gi|222475860|ref|YP_002564381.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222454231|gb|ACM58495.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 562

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 162/628 (25%), Positives = 264/628 (42%), Gaps = 112/628 (17%)

Query: 310 NGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            G  IE   P+    ++A        E E  A  FY+ +S   +  ++P   N G     
Sbjct: 30  EGYLIEGVEPKERIRQIAENAEEILDE-EGFADRFYDYMSRGFYSLASPVWANFGLDSGL 88

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
             SCF + + D++  I     E   + K  GG    +  +R  G+ I   NGKS G   F
Sbjct: 89  PISCFGSYMEDNMESILYTHAEVGEMTKLGGGTSGYFGDIRPRGSPI-TNNGKSNGSYSF 147

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
            ++ +     V+QG  R+G    Y++  H D+EE+L+++     +     D+     I D
Sbjct: 148 TELFDTAINVVSQGETRRGQFAGYIDVEHDDLEEWLNIKT----EGDPVQDIFYGVIIGD 203

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            + + +                         E                          W 
Sbjct: 204 EWFQEMVDGDE--------------------EKR----------------------ETWA 221

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGS 604
           K++      G P+I F+D  N   PQ +      +++SNLCTEI L ++ +E+ VC L S
Sbjct: 222 KIIETRINIGVPYIIFRDNMNEGKPQVYKDKDYEINASNLCTEIALPATPDESFVCCLSS 281

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAKKSNHTHRAIGL 658
           +N L       +D  K    + T  R LD V++           +E+A +    HRA+G+
Sbjct: 282 MNAL------HYDEWKDTDAVETLTRFLDAVMEEFIQKAEGTQFMERAVRFAKRHRAVGI 335

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G++G+ S L    IP+ S EA++  ++    I   +  AS ELA E G     +G     
Sbjct: 336 GVLGWHSYLQSNMIPFDSMEAMQENEQIFRTIREKSYEASEELADEFGEPEMLEG----- 390

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG- 777
                                                 G RN+  M++APT + + I G 
Sbjct: 391 -------------------------------------YGRRNTTTMSVAPTKSSSVILGQ 413

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           VS SI+P   N +V+       T  N FL   LK+R      +   +  +DGS+ +++ +
Sbjct: 414 VSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKERGRDGREVWDSIAQNDGSVQHLDCL 473

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLM 895
            D+ K++  T  EI  M +I  A++RQK IDQAQSLN+ +   E S K+++ +Y +AW  
Sbjct: 474 TDEEKEVFKTFAEIPQMAIINQAAQRQKHIDQAQSLNVSIDPSEVSVKEINQLYIEAWKK 533

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           G+K+ YY  S +A   +K +   ++ K 
Sbjct: 534 GVKSLYYQHSVNA--AQKFSRDILECKA 559


>gi|32477697|ref|NP_870691.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula
           baltica SH 1]
 gi|81658769|sp|Q7UI46|NRDJ_RHOBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|32448251|emb|CAD77768.1| ribonucleotide reductase [Rhodopirellula baltica SH 1]
          Length = 1040

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 123/622 (19%), Positives = 218/622 (35%), Gaps = 27/622 (4%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
                +    +T    ++   +PQ S+CF+ +V D++  I       AML K+  G G D
Sbjct: 187 MCNWHWDRTENTTAQPDNPYEYPQGSACFIQSVDDNMEDIMRLACSEAMLFKFGSGTGTD 246

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            + +R     + G  G   G + F++V +  A  V  GGK R+ A    L+ WH D+ EF
Sbjct: 247 LSTIRSQREKLSG-GGTPSGPLSFMRVYDSIAGVVKSGGKTRRAAKMQSLKVWHPDILEF 305

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           ++ +                +         V         + +    L D Y +      
Sbjct: 306 IECKWAEEKKAHALIREGYDSNFNGEAYASV------CFQNANLSVRLTDDYMEAVRKNE 359

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               R              A  L  KM    +  G P + +    N      + G +++S
Sbjct: 360 NFQTRWITDKPTTEPPSYVAKELLNKMAECAWHCGDPGVQYDTTINKWHTCPNSGAINAS 419

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCH 641
           N C+E        +   CNL SINL+     +  FD+++  +  RT     + ++D   +
Sbjct: 420 NPCSEYMF----LDDTACNLASINLMKFVQQDGSFDHERFRAACRTFFIAQEILVDHASY 475

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             E   +++H  R +GLG     S +    +PY S  A  +       +   A   S EL
Sbjct: 476 PTEPIARNSHKFRPLGLGYSNLGSVIMTAGLPYDSDAARGMCGSLTALLHGEANRTSAEL 535

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMR 759
           A   G +  +  +                +        +   +R  WD + +  +  G R
Sbjct: 536 ASVVGTFDGYVENEAPMLRVMQMHRDACDQINDDGPAELKEAARELWDGVLEIGEKYGFR 595

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           N+    +APT TI+ +    +  I+P    + Y +    G   +VN  +   LK      
Sbjct: 596 NAQATVLAPTGTISFMMDCDTTGIEPDIALVKYKQLAGGGMLKIVNQTVKLGLKTLGYDA 655

Query: 818 EAMISDLKY--HDGSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWID 868
           + +   LKY   + +I     + D+   +   AF        I     I   +  Q ++ 
Sbjct: 656 DTIDEILKYVDANDTIEGAPGLQDEHLAVFDCAFKPANGVRSIGWRAHITMMAAAQPFLS 715

Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            A S  + +  + + + +   Y   W +GLK     R  S  S   +T        +A  
Sbjct: 716 GAISKTVNMPTDVTPQDIADAYFWGWELGLKAIAIYRDGSKQSQPLNTKSDEQKATDAAE 775

Query: 928 VTDPNSSTHSLGIPSSCTSDTE 949
                +    +  P        
Sbjct: 776 AAKVETVEKIVYKPRRERLPDT 797


>gi|119960800|ref|YP_948076.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter
           aurescens TC1]
 gi|119947659|gb|ABM06570.1| Ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           aurescens TC1]
          Length = 727

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 168/672 (25%), Positives = 275/672 (40%), Gaps = 60/672 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     ++     R   +      +  L N    ++     +LG    Y  Y L   +G 
Sbjct: 76  EKLDYLVKNQYYERETLDQYTMNFIRDLFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 135

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M         E  A    + +    F  +TPT  N+G     +L S
Sbjct: 136 RFLERYED---RVCMVALHLARGDEDLANRLVDEIIDGRFQPATPTFLNAGKAQRGELVS 192

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GVIP +K+
Sbjct: 193 CFLLRIEDNMESIARAINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKL 252

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  
Sbjct: 253 LEDSFSYANQLGARQGAGAVYLHAHHPDIHRFLDTKRENADEKIRIKTLSLGVVVPDITF 312

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +   +N    LFSP    D+  +YG  F       +      + ++ +  ISA   ++ +
Sbjct: 313 ELAKKNEDMYLFSP---YDVEKVYGVPFSDISVTEKYYEMVDDSRIKKTKISAREFFQTL 369

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI   SS    A           
Sbjct: 370 AEIQFESGYPYIMFEDTVNRANPI--DGKITMSNLCSEILQVSSPSIYAEDLSYETVGKD 427

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLM 661
            S NL +       D      +I T++R L  V D++  +++    + N    AIGLG M
Sbjct: 428 ISCNLGSMNIAKTMDSPDFGLSIETSIRALSAVSDMSYINSVPSIAQGNAQSHAIGLGQM 487

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
                L   H+ Y S E ++  +     + FHA+ AS  LA E    +  F+ S +  G 
Sbjct: 488 NLHGYLAREHVHYGSEEGLDFTNIYFYTVLFHALRASNRLAIETGQKFGGFEKSTYASGE 547

Query: 721 FP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           F       + +     VR+  A  +  ++  W ELK  V   G+ N N  A+ PT +I+ 
Sbjct: 548 FFDKYTEQEWVPETERVRELFAGHHIPTQDDWRELKASVMEHGIYNQNLQAVPPTGSISY 607

Query: 775 ICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++     G       +L N+                        
Sbjct: 608 INNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLTND------------------------ 643

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                    + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 644 -------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYA 696

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 697 WRKGIKTLYYIR 708


>gi|323971480|gb|EGB66715.1| ribonucleotide reductase [Escherichia coli TA007]
          Length = 701

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++  + +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKESKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|82407441|pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp-Gdp Complex
 gi|82407442|pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp-Gdp Complex
 gi|83753672|pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp-Adp Complex
 gi|83753673|pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp-Adp Complex
 gi|83753674|pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753675|pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753676|pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|83753677|pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Cdp Complex
 gi|85543938|pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp Complex
 gi|85543939|pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp Complex
 gi|85543940|pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Udp Complex
 gi|85543941|pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Datp-Udp Complex
 gi|85543942|pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp Complex
 gi|85543943|pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dgtp Complex
 gi|85543944|pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp Complex
 gi|85543945|pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
           In A Ribonucleotide Reductase: Dttp Complex
 gi|301598861|pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp And Adenosylcobalamin
 gi|301598862|pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp And Adenosylcobalamin
 gi|301598863|pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosylcobalamin
 gi|301598864|pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosylcobalamin
 gi|301598865|pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosine
 gi|301598866|pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
           Complex With Dttp, Gdp And Adenosine
          Length = 644

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 147/566 (25%), Positives = 247/566 (43%), Gaps = 54/566 (9%)

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           ++ S      LS+CF+  V D +  IF A++E A++ K  GG+G++++ +R  G+ + GT
Sbjct: 121 IYRSRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGT 180

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRT 476
           +GK+ G + F+ V N     V QG +R+GA+   L   H D+EEF+D +K    +     
Sbjct: 181 HGKASGPVSFMHVFNSAISVVKQGSRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNF 240

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIK 535
            +++         M +                             YE   E +       
Sbjct: 241 FNLSVGF-----PMDKKEIL-----------------------KLYEEDGELELSHPRST 272

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           + +K+    L+RK+ T  +++G P + F    N   P      ++S+N C EI       
Sbjct: 273 IRKKVKIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLS 328

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +   CNLGSI++   + N   D + L   ++ AVR LDNVID+N   I+K  K+    R 
Sbjct: 329 DYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRR 388

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG+MGF   L+ L IPY S EA + A   M FI+ HA   S EL +E+G +   + S 
Sbjct: 389 LGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISR 448

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           +              +     AM  ++         ++     RN   + IAPT +I+NI
Sbjct: 449 Y-----------RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNI 497

Query: 776 CGVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
              S  ++P++   Y +     D        VN  L  +L    L     I       GS
Sbjct: 498 ADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPEIL---KRIEKELIEKGS 554

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
           + +I  +P+ +KK+   A +IDPM  +      Q+++D   S  + +    +   +  +Y
Sbjct: 555 LKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVY 614

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKST 915
            +A    ++     R  S  +   + 
Sbjct: 615 LEALRTNVRGITVYRDGSLQTQVLTK 640


>gi|327440527|dbj|BAK16892.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 697

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 167/674 (24%), Positives = 295/674 (43%), Gaps = 59/674 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311
           E     ++EG   +   E      +  +       +     ++     Y+ Y +      
Sbjct: 50  EKVRYLVDEGYYEKEFLELYSMDFIKQMYKKAYSYKFRFPSFMSASKFYESYAMKSRDGK 109

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370
             +E  +   + +A+ LA  +    ++A+E         +  +TPT  NSG +   +L S
Sbjct: 110 EILEKYEDRIVIIALYLAQGDEALAEKAIE----AVMTAYQPATPTALNSGKKARGELVS 165

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CF  T+ D +  I   +     L++  GG+G + T +R LG  I G   ++ GV+P  K+
Sbjct: 166 CFKLTMDDTMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIKGILNRASGVMPVAKL 225

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R   ++T   +PD+F 
Sbjct: 226 LENSFSYSNQLGQRNGSGVVYLNVFHGDIEAFISSKKPNADDKIRLATLSTGIILPDIFF 285

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548
           + + ++    LFS     D+   YGK        E Y    D   I+  ++++A  L+ +
Sbjct: 286 ELMRRDKDIVLFSS---YDIFKEYGKRMSEISITEMYYEFLDNPNIRKLKRLNARKLYTE 342

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------SSSEETAVCNL 602
           +    FE+G+P+  F D  N   P + +G V  SNLCTEI         +   E     L
Sbjct: 343 IKKAQFESGYPFEIFDDNVNNTHPLKEIGRVKMSNLCTEILQYQQTSVVTDQNEPNEYGL 402

Query: 603 G-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +   +           + TA+R+L NV  + +   +    K+N    ++GLG+
Sbjct: 403 DVSCNLGSIDIHEATKVQDFGQLVDTAMRLLTNVSTMTDIVNVPSVSKANKVMHSVGLGV 462

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQG 719
           M     L    I Y S E++E  D  ME +++H++ AS+E+A+ +   +  F+ S +  G
Sbjct: 463 MNLHGHLVQSGIRYGSKESIEFIDAFMESLNYHSLKASMEIAKQKNETFYRFEESDYASG 522

Query: 720 VFPIDSIGLLAEVRDELAMNR------TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           V+    +    +      +         +R  W++LK  V   G+ +S  +AIAPT +I+
Sbjct: 523 VYFESYVNKEEKELTPEVIKALGGTPIITRNMWEQLKSDVLKHGLFHSYRLAIAPTGSIS 582

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            I   + SI P  + + V+            FL N+                        
Sbjct: 583 YIRSCTASISPVTERVEVRDYADSRTIYPMPFLTND------------------------ 618

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
                   ++++  A+E++P  LI+  +  QK +DQ  S+ LY+ +  + ++L   Y  A
Sbjct: 619 -------NQELYTEAYEVNPYELIDLYAAAQKHVDQGISMTLYVTDQWNTEQLAKAYIYA 671

Query: 893 WLMGLKTTYYLRSR 906
           W  G+KT YY+R R
Sbjct: 672 WTKGIKTVYYVRQR 685


>gi|311741197|ref|ZP_07715021.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303367|gb|EFQ79446.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 720

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 167/690 (24%), Positives = 291/690 (42%), Gaps = 67/690 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301
             H     +Y       I+  +  +     +++ +D  ++    K    + F +      
Sbjct: 51  LQHVNQNTVYFHDLEEKIDYLINNKYYDPQVIEQYDFSFIKELFKRAYSYKFRFKSFLGA 110

Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Y  Y        +G R  E  +    RV+M            A    + + +  F  +TP
Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDAGLAEHLVDEIMTGRFQPATP 167

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G     +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I 
Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIK 227

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R
Sbjct: 228 HIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIR 287

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533
              ++    +PD+  +   +N    LFSP    D+  +YGK F      E+YE   +   
Sbjct: 288 IKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPR 344

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           I+  +KI+A   ++ +  + FE+G+P+I F+D  N  +P +    ++ SNLC+EI   +S
Sbjct: 345 IRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRANPVKTSW-INMSNLCSEILQVNS 402

Query: 594 SEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
           + E              S NL +       D    A+T+ TA+R L  V D  +  ++  
Sbjct: 403 ASEFNADLTYEELGSDISCNLGSLNIAMTMDSPDFANTVETAIRGLTAVADKTSIDSVPS 462

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++ N    AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+ER
Sbjct: 463 VRRGNDESHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAVLYAALRASNKIARER 522

Query: 706 GAY-SSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           G Y + F  S +  G F               + E+ D  +++  S   W++LK+ V   
Sbjct: 523 GEYFTEFPQSEYASGEFFDRYDPEEFKPKTKKVQELFDASSIHTPSAQDWEDLKQEVAKH 582

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815
           G+ N N  A+ PT +I+ I   + SI P    + ++     G        + N+      
Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                      +    ++EI    ++++ +   K++DQ  SL L
Sbjct: 637 -------------------------NLEYFKDSYEIGYEKIVDTYAVATKYVDQGLSLTL 671

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  +  + + ++     AW  G+KT YY+R
Sbjct: 672 FFKDTATTRDVNRAQIYAWRKGIKTLYYIR 701


>gi|319948550|ref|ZP_08022681.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia
           cinnamea P4]
 gi|319437797|gb|EFV92786.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia
           cinnamea P4]
          Length = 693

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 171/683 (25%), Positives = 285/683 (41%), Gaps = 74/683 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +E+    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLVEKDYYEREVLDQYTRNFVRELFDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERYEDRVCMVALTLAAGD---ETLARQLVDEIIEGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREHGAPIKHIENQSSGVIPVMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISAVALWR 547
            +   +N    LFSP    D+  +YGK F       NY    +   IK  + I+A   ++
Sbjct: 276 FELAKRNDDMYLFSP---YDVERIYGKPFADVDISANYHEMVEDSRIKKTK-INARHFFQ 331

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSE 595
            +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI               S   
Sbjct: 332 TVAELQFESGYPYIMYEDTVNRANPI--AGKITHSNLCSEILQVSTASEFNEDLTYSHVG 389

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
           +   CNLGS+N+         D      TI TA+R L  V D  + +++   ++ N    
Sbjct: 390 KDISCNLGSLNIAKA-----MDSPDFGRTIETAIRGLTAVSDQTHINSVPSIERGNSESH 444

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           AIGLG M     L    I Y S E ++  +     + +HA+ +S  +A+ER   ++ F  
Sbjct: 445 AIGLGQMNLHGYLARERIHYGSEEGIDFTNIYFYTVLYHALRSSNLIARERGTWFAGFPE 504

Query: 714 SLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  G F         E           E  +   ++  W  LK  V+  G+ N N  A
Sbjct: 505 SKYASGEFFDKYTDQTWEPATDRVRQLFAEAEVAIPTQEDWRALKADVQKYGIYNQNLQA 564

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824
           + PT +I+ I   + SI P    + ++     G       +L N+               
Sbjct: 565 VPPTGSISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND--------------- 609

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                               +  A+EI    +I++ +   + +DQ  SL L+  +  + +
Sbjct: 610 ----------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTR 653

Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906
           +++     AW  G+KT YY+R R
Sbjct: 654 EVNRAQIYAWRKGIKTLYYIRVR 676


>gi|270339460|ref|YP_003331540.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1]
 gi|254940176|gb|ACT88319.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1]
          Length = 786

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 174/760 (22%), Positives = 302/760 (39%), Gaps = 87/760 (11%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKK--PQKATHHEMQCLYPEYFCR-YIEEGVKARLLHES 272
           Y    +  L    R+E +  +       K      + +Y E     +I   VK   L + 
Sbjct: 33  YGYSGSSILQNVSRQEAVEYITSVVANLKPRCRIDERIYIELGKMVHIRIRVKTTTLDKW 92

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQIL-----------------------YDRYFLHI 309
           +   +L  L   +   RD +    G++ +                        + Y  ++
Sbjct: 93  LNSMELALLPQVI---RDISINMPGVKRVLEQFEIHDYEPLCELGLQSALKYEEMYLANL 149

Query: 310 NGSRIEMPQAFFMRVA----------MGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357
               +E    FF+R+A          M  AL             F+  LS    + +TP 
Sbjct: 150 ENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFKSFFFYLSRQLMIPATPI 209

Query: 358 LFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           +   G     L+SC+L +  + D    I   +++ A +    GG+G          +   
Sbjct: 210 MLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRGGIGICLQNFNKKLSK-- 267

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRR 474
                ++GV+P LK+ +   +A+N   +R   VC Y+E WH D+   L++R     D+  
Sbjct: 268 ---ECTKGVLPLLKLLDSMTIAINSDSERPTGVCIYVEPWHADIRSILNMRGMLASDENS 324

Query: 475 RTHDMNTANWIPDLFMKRVTQN-----AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           R  ++ +  W PDLF  R  ++             D  S L  LYGKEF   YE  E   
Sbjct: 325 RCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFDDAASHLSKLYGKEFNEEYERLEAAG 384

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEI 588
              +      +    +   ++     TG P++ FKD CN        G  + +SNLCTEI
Sbjct: 385 MGVD-----SLPIQEMAYLIVRSAIMTGSPFLMFKDACNRHYHFDTRGDALTTSNLCTEI 439

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFD------YDKLASTIRTAVRVLDNVIDINCHT 642
              ++  +  VCNL SINL         D         L     TA   ++ ++      
Sbjct: 440 IQKATDTKHGVCNLISINLPQCLRRIAHDQSLYFSIPLLIRAAYTATIFVNAMMRAGNFP 499

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            E A +    +R++GLG+ G  +    L +   S EA  +  + +E +   AI AS  L 
Sbjct: 500 TEAAMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEARRLNRQILESLLLGAIHASTSLC 559

Query: 703 QE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           +     + +F+ S++ +G+ P D+                    W +L+  +   G+ NS
Sbjct: 560 KLGMTPFKNFRESIYGRGLLPFDAYPNTP---------LIHFKKWQQLRVVMMKYGLYNS 610

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWDE 818
             +A+ PT + + +   S+   P + NL+ K   +G+    N  L+  +++   R+    
Sbjct: 611 QFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGEILRPNLQLMRTIRRLFPRECARL 670

Query: 819 AMISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           ++IS L+    SI     +           TAFE D   LI+  + R  ++DQ+QS++L+
Sbjct: 671 SVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQRQLIDMCADRAPFVDQSQSMSLF 730

Query: 877 LDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           + EP        ++  +   A+  GLKT  YY + + AT+
Sbjct: 731 ISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKKATN 770


>gi|194439439|ref|ZP_03071515.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
 gi|194421615|gb|EDX37626.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 101-1]
          Length = 714

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++  + +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKESKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|227878536|ref|ZP_03996470.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|227861870|gb|EEJ69455.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
          Length = 722

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 178/750 (23%), Positives = 315/750 (42%), Gaps = 79/750 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++    + E  NY             +E      +   +    +   L  E   
Sbjct: 8   DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 58

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 59  YLVDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 118

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 175

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q      ++ +  ISA   ++ +  + 
Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 412

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL S +  +V+ L+ V    +       +K N  +RAIGLG 
Sbjct: 413 LGSLNIAAAMNSA----DKLGSLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 468

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA++ GA+  FK S +  G 
Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 528

Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I          + E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 529 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +         V ++                           
Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L++++  + + L+  Y 
Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678

Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            A+     + YY+R R       E  T   
Sbjct: 679 YAFKKRCNSIYYVRIREKVLAGSENLTADE 708


>gi|306840846|ref|ZP_07473593.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO2]
 gi|306289241|gb|EFM60490.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO2]
          Length = 738

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 179/781 (22%), Positives = 308/781 (39%), Gaps = 100/781 (12%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G  +     + +       DG     L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +     VA+ LA 
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAR 163

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
            +   E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 164 GD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV- 732
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +            
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEYFDKYTDQAWAPA 569

Query: 733 -------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                   ++  +   ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P 
Sbjct: 570 TEKVRRIFEDADIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIHPI 629

Query: 786 YQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + ++     G      +F+ N+                                 + 
Sbjct: 630 VSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLEY 658

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+
Sbjct: 659 YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYI 718

Query: 904 R 904
           R
Sbjct: 719 R 719


>gi|300957446|ref|ZP_07169659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
 gi|300315802|gb|EFJ65586.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 175-1]
          Length = 701

 Score =  314 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFCFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|256849453|ref|ZP_05554885.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           crispatus MV-1A-US]
 gi|262046122|ref|ZP_06019085.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|256713569|gb|EEU28558.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           crispatus MV-1A-US]
 gi|260573452|gb|EEX30009.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 722

 Score =  314 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 177/750 (23%), Positives = 312/750 (41%), Gaps = 79/750 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++    + E  NY             +E      +   +    +   L  E   
Sbjct: 8   DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 58

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 59  YLVDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 118

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 175

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q      ++ +  ISA   ++ +  + 
Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCN 412

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL   +  +V+ L+ V    +       +K N  +RAIGLG 
Sbjct: 413 LGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 468

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA+  GA+  FK S +  G 
Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGD 528

Query: 721 FPIDSIGLL--------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I            E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 529 YFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +         V ++                           
Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L++++  + + L+  Y 
Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678

Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            A+     + YY+R R       E  T   
Sbjct: 679 YAFKKRCNSIYYVRIREKVLAGSENLTADE 708


>gi|167856023|ref|ZP_02478768.1| ribonucleoside-diphosphate reductase large chain [Haemophilus
           parasuis 29755]
 gi|219871495|ref|YP_002475870.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis SH0165]
 gi|167852862|gb|EDS24131.1| ribonucleoside-diphosphate reductase large chain [Haemophilus
           parasuis 29755]
 gi|219691699|gb|ACL32922.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus
           parasuis SH0165]
          Length = 569

 Score =  314 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 153/581 (26%), Positives = 247/581 (42%), Gaps = 94/581 (16%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY  +   +F  S+P   N G       SCF + + D ++ I     E  M++K
Sbjct: 65  EGYADKFYYYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 124

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  
Sbjct: 125 IGGGTSAYFGDIRPRGSLIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 183

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D++E+LD+      +      M     +   +++ +     +                
Sbjct: 184 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 224

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        LW K+L    ETG P++ FKD  N   P  +
Sbjct: 225 ---------------------------RQLWAKILQRKTETGIPYLFFKDNANAGRPDVY 257

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 VH+SNLCTEI L S++EE+ VC L S+NLL        D  ++ +     V   
Sbjct: 258 KDKNMTVHASNLCTEIMLPSNNEESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 317

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                     +++A +    HRA+G+G++G+ S L   +IP+ S EA++  +   + +  
Sbjct: 318 FIEKSAEIPFLDRANRFAKRHRALGIGVLGWHSYLQANNIPFDSFEAMQKNNIIFKTLKE 377

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
             + AS ELAQ  G     KG                                       
Sbjct: 378 KTMKASEELAQRFGEPELLKG--------------------------------------- 398

Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
               G RN+  M+IAPT + + I G VS S++P   N YVK          N FL   L+
Sbjct: 399 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEQLLR 455

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           ++ L  E +   +  +DGS+ ++ ++ +  K++  T  EI  + +I+ A++RQK+IDQ Q
Sbjct: 456 EKGLDTEEIWESILLNDGSVQHLTQLSEHEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 515

Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           S+N+ +   +  + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 516 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 556


>gi|333001012|gb|EGK20582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-272]
 gi|333015484|gb|EGK34823.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-227]
          Length = 714

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVNAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    + T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|306845615|ref|ZP_07478184.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO1]
 gi|306273936|gb|EFM55763.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           BO1]
          Length = 738

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 181/782 (23%), Positives = 307/782 (39%), Gaps = 102/782 (13%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G  +     + +       DG     L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +    RV M    
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
                E+ A +  + + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 161 LARGDEQLARDLVDEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRTNPI--EGRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A   
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568

Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIHP 628

Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++     G      +F+ N+                                 +
Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LR 904
           +R
Sbjct: 718 IR 719


>gi|170019073|ref|YP_001724027.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ATCC 8739]
 gi|256024813|ref|ZP_05438678.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           4_1_40B]
 gi|300949071|ref|ZP_07163118.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|301645346|ref|ZP_07245293.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|307139367|ref|ZP_07498723.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli H736]
 gi|169754001|gb|ACA76700.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli ATCC 8739]
 gi|300451457|gb|EFK15077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 116-1]
 gi|301076380|gb|EFK91186.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 146-1]
 gi|323935631|gb|EGB31948.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941489|gb|EGB37672.1| ribonucleotide reductase [Escherichia coli E482]
 gi|323960579|gb|EGB56206.1| ribonucleotide reductase [Escherichia coli H489]
          Length = 701

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|284922617|emb|CBG35705.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli 042]
          Length = 714

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 175/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TA+
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAM 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W  L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWARLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|284931053|gb|ADC30991.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. F]
          Length = 722

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 184/734 (25%), Positives = 303/734 (41%), Gaps = 97/734 (13%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     I+     + + E++    L  L   +K E D  F  ++G    Y+ Y L  N 
Sbjct: 53  HERMDYLIKNDFYEKEVVENVSKEQLEELYGVIK-EFDHEFPSFMGAFKFYNSYCLKSND 111

Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
            +   E      +  A+ L  K  +           + S  F  +TPT  N+G +   + 
Sbjct: 112 GKEFYETYSERCLMNALFLGGKNFQNV---KNILIEILSGRFQPATPTFLNAGKKQRGEY 168

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SC+L  V D++  I  A+  +  L+K  GG+    T +R  GA I    G++ GVIP +
Sbjct: 169 VSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTNLREFGAPIKNIEGQASGVIPVM 228

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G+R G   AYL   H DV  FLD ++   D++ R   +     +PD+
Sbjct: 229 KILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSKRENADEKIRIKSLALGLVVPDI 288

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547
             +    N    LFSP +V      YGK F       E        ++ +  ISA   ++
Sbjct: 289 TFELAKNNEQMALFSPYDVQRE---YGKPFSDIKVTEEYHNMVNNPRIKKTYISARKFFQ 345

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597
            +  + FE+G+P++ F D  N R    + G +  SNLC+EI  +S+S E           
Sbjct: 346 TIAELHFESGYPYLLFDDTVNNR--NPNAGRIVMSNLCSEIVQSSTSTEYNEDFSIKKLG 403

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHR 654
               CNLGS+N+     +     ++   ++  A++ LD+V    N       K  N  + 
Sbjct: 404 QDISCNLGSVNIDKMMRSA----ERFEDSVYYAIKSLDHVSKSANLDCAPSVKNGNANNH 459

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           A+GLG M     L    I Y SPEA+E  D     ++++A  AS  LA E+   Y++FK 
Sbjct: 460 ALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLAYYAFKASNRLAVEQKQTYANFKT 519

Query: 714 SLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           S +  G +                    E+     +   ++  W  L + +K  G+ N++
Sbjct: 520 SKYADGSYFDKYTKCDPNTYVIKNPKIKEIFSNYKIKVPTQADWQALTEEIKKTGLANAH 579

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +AIAPT +I+ +   + SI P    + V+    G    V                    
Sbjct: 580 LLAIAPTGSISYLSSCTPSIQPVVAPVEVR--KEGKIGRV-------------------Y 618

Query: 823 DLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
            L Y          + +   K +   A+E+ P   I+  ++ QK +DQA SL L++++  
Sbjct: 619 SLAYK---------LNEHNYKYYKDGAYELGPNPYIDICAQAQKHVDQAISLTLFMNDTA 669

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + + L+  Y +A+     + YY+R R   +V + +      K  A  V            
Sbjct: 670 TTRDLNKAYIRAYKSKCASVYYVRVR--QNVLEESENLDWAKDQASTV------------ 715

Query: 941 PSSCTSDTECEVCQ 954
                   +CE CQ
Sbjct: 716 --------DCEACQ 721


>gi|326402358|ref|YP_004282439.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium
           multivorum AIU301]
 gi|325049219|dbj|BAJ79557.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium
           multivorum AIU301]
          Length = 761

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 153/639 (23%), Positives = 255/639 (39%), Gaps = 85/639 (13%)

Query: 295 YLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
            +  QI   +Y L    G  ++   +  + RVA  LA  E E       FY  L  F F+
Sbjct: 20  PISAQIWDAKYRLKDEAGEPVDRTVEDTWRRVARALAETEREPSSWEAPFYEALRDFRFV 79

Query: 353 CSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   +  +GT     L +CF+   + DDL  IF  L+E A+  +  GG+G D++ +R  
Sbjct: 80  PAGRIISGAGTARRVTLFNCFVMGDIEDDLGRIFAHLREAALTMQQGGGIGYDFSSIRPK 139

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  ++   
Sbjct: 140 GAAVRGVGADASGPLSFMDVWDSMCRTIMSAGARRGAMMATMRCDHPDIEAFIAAKR--- 196

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +  R  + N +  + D FM+ V  +A W L                             
Sbjct: 197 -EPGRLRNFNLSVLVTDDFMRAVEADAAWDLVF--------------------------- 228

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             E KV+R + A ALW  +    ++   P + F D  N R+   +   +H++N C E  L
Sbjct: 229 --EGKVYRTLQARALWEAITRATYDYAEPGVIFIDRINKRNNLYYCETIHATNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                    C LGSINL     +        D  +LA  +  AVR+LD+ ID +   +E 
Sbjct: 287 PPY----GACLLGSINLARLVRDPFGSGARIDEAELAELVTIAVRMLDDTIDASGFPLEA 342

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++     R +GLG+ G   AL +  + Y +PEA   A +    I   A  AS  LA E+
Sbjct: 343 QREEAVAKRRVGLGMTGLADALMMCGLRYGTPEAAARAGDWARQIERAAYLASAALAAEK 402

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +  + +  G                      + L  D ++  +   G+RN+   +
Sbjct: 403 GAFPLYDAAQYLAGE-------------------TIAGLDED-VRAAIAAHGIRNALLTS 442

Query: 766 IAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           +APT TI+ +   VS  ++P +   Y +             L  +  +R+  +E     L
Sbjct: 443 VAPTGTISLLSDNVSSGVEPVFALAYTRKV-----------LQRDGSRRE--EEVTDYAL 489

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
           +      G    +P        TA E+ P   +   +  Q+ +D A S  + +  +   +
Sbjct: 490 RLFRAKFGEGAPLPAH----FVTAQELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFE 545

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
               +Y  A+  G K     R  + T          D K
Sbjct: 546 DFQEVYLDAYRSGCKGCTTYRPNAVTGSVLEVAPPADAK 584


>gi|332999412|gb|EGK18997.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri VA-6]
          Length = 714

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    + T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|30064042|ref|NP_838213.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 2457T]
 gi|56480159|ref|NP_708489.2| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 2a str. 301]
 gi|30042298|gb|AAP18023.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|56383710|gb|AAN44196.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 2a str. 301]
          Length = 701

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    + T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|18202755|sp|Q9CBQ0|RIR1_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
          Length = 721

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 175/738 (23%), Positives = 297/738 (40%), Gaps = 81/738 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEY 255
           + +S  ++  E +Y  + A   L       +  ++VL       Q    + +      E 
Sbjct: 10  VTASTHMLSNETDYHALNAMLNLYDADGKIQFDKDVLAARQFFLQHVNQNTVFFHNQDEK 69

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
               I E    R + +      +  L +    ++     +LG    Y  Y L   +G R 
Sbjct: 70  LDYLIRENYYEREVLDQYSRNFVKSLLDRAYAKKFRFSTFLGAFKYYTSYTLKTFDGKRY 129

Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
            E  +     VA+ LA  +      A +  + +    F  +TPT  NSG +   +  SCF
Sbjct: 130 LERLEDRVCMVALTLAAGD---TGLAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCF 186

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 187 LLRIEDNMESIGRSVNSALQLSKRGGGVALLLSNIREHGAPIKNIEHQSSGVIPIMKLLE 246

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 247 DAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVIIPDITFEL 306

Query: 493 VTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             +N    LFS  +V  ++++          Y      A   + K    I A   ++K+ 
Sbjct: 307 AKRNEDMYLFSSYDVERVYEVPFADISVTEKYYEMLDDARIRKTK----IKAREFFQKLA 362

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598
            + FE+G+P++ F+D  N  +P    G +  SNLC+EI               +   +  
Sbjct: 363 ELQFESGYPYVMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDI 420

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+         D    A T+  A+R L  V D  +  ++   ++ N+   AIG
Sbjct: 421 SCNLGSLNIAKT-----MDSPDFAQTVEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIG 475

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716
           LG M     L    I Y S E V+  +     + FH + AS  +A ERG  +  F+ S +
Sbjct: 476 LGQMNLHGYLSREGIFYGSEEGVDFTNIYFYTVLFHVLLASNSIAIERGTFFKGFERSKY 535

Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G F    I    E +         E A+   ++  W  LK+ V   G+ N N  A+ P
Sbjct: 536 ASGEFFDKYIEQTWEPKTDKVRQLFAEAAIRIPTQNDWKRLKELVVAHGIYNQNLQAVPP 595

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++     G       ++ N+                  
Sbjct: 596 TGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND------------------ 637

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                          + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 638 -------------NLQYYQDAYEIGYQKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVN 684

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 685 KAQIYAWRKGIKTLYYIR 702


>gi|237745665|ref|ZP_04576145.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           HOxBLS]
 gi|229377016|gb|EEO27107.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 957

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 149/643 (23%), Positives = 260/643 (40%), Gaps = 75/643 (11%)

Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCF 372
             +    RVA  LA  E    ++K A EF        F+ +      +GT     L +CF
Sbjct: 33  SAEEVMERVACALAEVEAPKSRKKYAEEFL-WAMQNGFIPAGRVSSAAGTGLQTTLINCF 91

Query: 373 LTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           +  V D +        GI+ AL + A   +  GG+G +++ +R  GA + GT   + G I
Sbjct: 92  VQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGVGYNFSSIRPRGAKVRGTGSSASGPI 151

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++KV + +   V   G R+GA  A L   H D+ EF+ +++    ++ +  + N +  +
Sbjct: 152 SYMKVFDRSCETVESAGARRGAQMAVLNIDHPDILEFITVKQ----EQNQLSNFNVSVGV 207

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V  ++ + L    E  +        F+ A              V+ +I A  +
Sbjct: 208 SDEFMRAVETDSDFELAHTAE-PNDELKEKGAFKRA----------DGKWVYNRIKAREV 256

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   +    P + + D  N  +   +  V+ ++N C E  L     +   C LGS+
Sbjct: 257 WDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIEATNPCGEQPLP----DYGCCCLGSL 312

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL +           FD++ L    + AVR+LDNV+      +E+  +     R IGLG 
Sbjct: 313 NLTSFITAPFSAQPLFDFNLLTRVTKIAVRMLDNVLTATKWPLEEQAREAAAKRRIGLGF 372

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G   AL +L I Y S +A  ++ E  + +   A + S+ELA+ERG +       + +G 
Sbjct: 373 TGLGDALIMLGIRYDSEKARILSAEIAKAMRDAAYTGSIELAKERGGFPMLDVERYLEGG 432

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GV 778
           F                         +E+K++++  G+RNS+  +IAPT TI+       
Sbjct: 433 FV--------------------SRLPEEMKEKIRKHGIRNSHLTSIAPTGTISLAFADNA 472

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           S  I+P++   Y +     D +  N + V +   R       +     +D S        
Sbjct: 473 SNGIEPAFSWFYNRVKRMPDGSRKN-YTVEDHAYR-------VYRSMNNDVS-------- 516

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
             L     +A EI  +  +   +    +ID A S  + +  +   +    +Y +AW  GL
Sbjct: 517 -KLPDYFVSALEISAIDHMLMVAAVAPYIDAAISKTVNVAEDYPYEDFKNLYMEAWKKGL 575

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           K     R  +  +   S              +  +S T S   
Sbjct: 576 KGITTYRPNNVRTAILSVPAEEKKAEAPEEKSTTHSVTLSEQD 618


>gi|117926763|ref|YP_867380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Magnetococcus sp. MC-1]
 gi|117610519|gb|ABK45974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Magnetococcus sp. MC-1]
          Length = 707

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 144/659 (21%), Positives = 271/659 (41%), Gaps = 63/659 (9%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEK--EKRAV 340
           +  +RD   +     I   +Y L   G     +  +  F RVA  LAL E E   E+   
Sbjct: 10  INPQRDLELQSASQDIWDRKYRLKSKGGDPVDKTIEDTFKRVARALALVEQEPLQEQWYQ 69

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSC-FLTTVPDDLYGIFGALQENAMLAK 395
            F   L       +   + N+G R  +      +C    TV D +  I  A+ E  +  K
Sbjct: 70  RFLWALMQGAI-PAGRIVSNAGARDHKPATSTINCTVSQTVKDSMDDILAAVHEAGLTLK 128

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
              G+G +++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  
Sbjct: 129 AGCGIGYEFSTLRPRGAFVAGAGSSTSGPLSFMDIYDAMCRTVSSAGGRRGAQMATFDIT 188

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DV +F+  ++    +  R    N +  + + FM+ V  +  W L  P    + ++L  
Sbjct: 189 HPDVVDFIRAKR----EDGRLRQFNLSCLVTEQFMEAVKSDMDWELVFPA---NHYELDD 241

Query: 516 KEFEIAYENY-----ERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
              EI Y ++      +  ++GE+  +V++ I A  LW  +++  ++   P     D  N
Sbjct: 242 PTVEIVYRHWPVTEGYKTNEQGEVACRVWKSIPARRLWDVVMSSTYDYAEPGFILIDKVN 301

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623
            ++       + ++N C E  L         C LGS+NL     N       FD+ +   
Sbjct: 302 EQNNNWFCEDIRATNPCGEQPLPPY----GACLLGSVNLARFVKNPFTAKAEFDWARFKE 357

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +    R+LDNV++I+   +          R  G+G +G  S L +L++ Y   ++VE  
Sbjct: 358 VVAVFTRMLDNVVEIHGLPLPGQADEIAHKRRHGMGFLGLGSTLTMLNMVYGDRQSVEFT 417

Query: 684 DESMEFISFHAISASVELAQERGAYSSF-------KGSLWDQGVFPIDSIGLLAEVRDEL 736
            +    ++       +ELA E+G            +  +  +     D I +  ++  ++
Sbjct: 418 SQVAREMALTGWEVGLELANEKGPAPVMNQMYTITEAMMAKRPEMANDGICVGDQLPGKV 477

Query: 737 AMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANICGV--SQSIDPSYQNLYV 791
            M R SR      + L+KR++T G R S+  +IAPT TI+   G   S  I+PS+ + Y 
Sbjct: 478 LMARYSRYMAKFPERLRKRIETEGSRFSHHSSIAPTGTISLSLGNNVSNGIEPSFAHKYS 537

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG-NIERIPDDLKKI----HA 846
           ++             + E ++     +    +L  +   +  + +   ++ K +      
Sbjct: 538 RNI------------IREGRKTKEKVDVFSYELLAYRALVNPDADPYAEEEKNLLPATFL 585

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +  I+P   ++  +  Q+W+D + S  + +  +    +   IY  A+  GLK     R
Sbjct: 586 DSNAINPRAHVDIQAAAQEWVDSSISKTINVPTDFPYDEFKDIYLYAYEKGLKGCTTFR 644


>gi|256019543|ref|ZP_05433408.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 701

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|315061956|gb|ADT76283.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli W]
          Length = 701

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F   TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTTVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|157162126|ref|YP_001459444.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli HS]
 gi|188494464|ref|ZP_03001734.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|253772464|ref|YP_003035295.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037717|ref|ZP_04871775.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           1_1_43]
 gi|254162612|ref|YP_003045720.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli B str. REL606]
 gi|301026691|ref|ZP_07190102.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|331643363|ref|ZP_08344494.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|157067806|gb|ABV07061.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli HS]
 gi|188489663|gb|EDU64766.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 53638]
 gi|226839341|gb|EEH71362.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           1_1_43]
 gi|242378237|emb|CAQ33012.1| nrdE, subunit of ribonucleoside-diphosphate reductase 2, alpha
           subunit dimer and ribonucleoside-diphosphate reductase 2
           [Escherichia coli BL21(DE3)]
 gi|253323508|gb|ACT28110.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974513|gb|ACT40184.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli B str. REL606]
 gi|253978680|gb|ACT44350.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia
           coli BL21(DE3)]
 gi|299879613|gb|EFI87824.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 196-1]
 gi|309703040|emb|CBJ02372.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli ETEC H10407]
 gi|315615062|gb|EFU95699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 3431]
 gi|331036834|gb|EGI09058.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H736]
 gi|332344557|gb|AEE57891.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli UMNK88]
          Length = 714

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|86359306|ref|YP_471198.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CFN 42]
 gi|86283408|gb|ABC92471.1| ribonucleotide-diphosphate reductase, alpha subunit protein
           [Rhizobium etli CFN 42]
          Length = 693

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 188/717 (26%), Positives = 294/717 (41%), Gaps = 84/717 (11%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R  L+K R        +   + T      L  +      E   +  +L +   +F    
Sbjct: 9   GRIQLDKDRTAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDL 67

Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337
                 Y R F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E 
Sbjct: 68  FDQA--YARQFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD---EA 122

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K 
Sbjct: 123 LARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 182

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   H
Sbjct: 183 GGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 242

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+  +YG 
Sbjct: 243 PDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSP---YDVERVYGM 299

Query: 517 EF-----EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            F        Y      A   +    +KI A   ++ +  + FE+G+P+I F+D  N  +
Sbjct: 300 PFTEISVTEKYREMVADARISK----KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 355

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYD 619
           P    G +  SNLC+EI   S + E               CNLGS+N+ A       D  
Sbjct: 356 PV--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAA-----MDSG 408

Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
               TI TA+R L  V D+ +  ++   +K N    AIGLG M     L    I Y S E
Sbjct: 409 DFGKTIETAIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 468

Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV----- 732
            V   +     +++HAI AS  LA ERGA +  F+ S +  G +         +      
Sbjct: 469 GVNFTNIYFYTVTYHAIRASNLLAVERGASFRGFENSKYASGDYFDKYTEQEWKPATEKV 528

Query: 733 ---RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               D+  ++  ++  W  LK  V T G+ N N  A+ PT +I+ I   + SI P    +
Sbjct: 529 QALFDKSGIHIPTQDDWVALKTGVMTTGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKI 588

Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            ++     G       F+                                DD    +  A
Sbjct: 589 EIRKEGKIGRVYYPAPFM-------------------------------TDDNLDYYQDA 617

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +EI P  +I++ +   + +DQ  SL  +  +  + + ++     AW  G+KT YY+R
Sbjct: 618 YEIGPEKIIDTYAAATQHVDQGLSLTSFFRDTATTRDINKTQIYAWKKGIKTIYYIR 674


>gi|323966927|gb|EGB62355.1| ribonucleotide reductase [Escherichia coli M863]
 gi|327251393|gb|EGE63079.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli STEC_7v]
          Length = 714

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 179/732 (24%), Positives = 301/732 (41%), Gaps = 73/732 (9%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254
           ++  L ++  +Y  + A   +  +        + K ++A    M               +
Sbjct: 5   TAERLTQETTDYHALNA---MLNIYDNAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                + EG     +        ++ L             +LG    Y  Y L   +G R
Sbjct: 62  RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
               + F  RV M         +  A +  + + S  F  +TPT  N G R   +L SCF
Sbjct: 122 Y--LEDFADRVTMVALTLAQGDKTLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+    
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +NA   LFSP    D+  +YGK F +IA   +  +    E    + I+A   ++++  
Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAE 356

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604
           + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  S
Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQINSASEYDENLDYARTGHDIS 414

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    +  D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M  
Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G + 
Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534

Query: 723 IDS----IGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                           EL    +    +R  W +L+  V   G+ N N  A+ PT +I+ 
Sbjct: 535 SQYLQGNWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594

Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++    +G       F+ N                         
Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                 +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 684 WRKGIKTLYYIR 695


>gi|261342123|ref|ZP_05969981.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315454|gb|EFC54392.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 693

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 175/679 (25%), Positives = 290/679 (42%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           +     ++EG     +        +V L             +LG    Y  Y L   +G 
Sbjct: 40  QRLDYLVKEGYYEERVLARYGRDAIVKLFEHAHARGFRFQTFLGAWKYYTSYTLKTFDGK 99

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +   + VA+ LA  +   E  AV+  + + S  F  +TPT  N+G     +L S
Sbjct: 100 RYLETFEDRVVMVALTLAQGD---EALAVQLTDEILSGRFQPATPTFLNAGKAQRGELVS 156

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 157 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 216

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I D+  
Sbjct: 217 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVITDITF 276

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
           +   +NA   LFSP    D+  LYGK F ++A      +    +    + I+A   ++ +
Sbjct: 277 QLAKENADMALFSP---YDIERLYGKAFGDVAISERYDELVADDRIRKKYINARDFFQTL 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I ++D  N  +P    G ++ SNLC+EI               +   + 
Sbjct: 334 AEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNAASTYDENLDYADVGKD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      T+ TAVR L  V D+ +  ++   +  N    AI
Sbjct: 392 ISCNLGSLNIAHT-----MDSPDFGRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPE ++  +     I++HA+  S+ LA+ER   ++ F+ S 
Sbjct: 447 GLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALHTSMMLARERGQRFAGFEQSR 506

Query: 716 WDQGVFP-----IDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       D      +VR   A   +   +R  W +L+  V   G+ N N  A+ 
Sbjct: 507 YASGEYFNQYLENDWQPKTEKVRQLFARAGVTLPTRAMWQQLRDEVMQHGIYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           P+ +I+ I   + SI P    + ++    +G       F+ N                  
Sbjct: 567 PSGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTN------------------ 608

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                        +   ++  A+EI P  +I++ +   K +DQ  SL L+  +  + + +
Sbjct: 609 -------------ENLALYQDAYEIGPEKIIDTYAEATKHVDQGLSLTLFFPDTATTRDI 655

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 656 NRAQIYAWKKGIKTLYYIR 674


>gi|110806692|ref|YP_690212.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri 5 str. 8401]
 gi|110616240|gb|ABF04907.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           flexneri 5 str. 8401]
 gi|281602051|gb|ADA75035.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017]
 gi|313648325|gb|EFS12769.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332753900|gb|EGJ84275.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-671]
 gi|332755582|gb|EGJ85945.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2747-71]
 gi|332765625|gb|EGJ95838.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 2930-71]
 gi|333015921|gb|EGK35257.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-304]
          Length = 714

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    + T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|327198710|emb|CCA61411.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 580

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 157/650 (24%), Positives = 258/650 (39%), Gaps = 100/650 (15%)

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            YE D  ++ +GL  + D Y           PQ     V       +  +       Y  
Sbjct: 5   NYEMDKLYDSVGLLRMKDSYLSGGEA----SPQDRLASVCNQFGTDDDHR----RRLYEY 56

Query: 346 LSSFHFMCSTPTL-FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            S      S+P L +N   +     SC+L  + D + G+   L E   L+   GG+    
Sbjct: 57  ASKHWLSLSSPLLGYNKDKKMSYPISCYLLYLHDTVEGLIDTLSEANHLSVCGGGVSV-- 114

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
                    I   N KS GV+   K  +   +A  QG  R+G+   YL+  H ++  F+D
Sbjct: 115 ------KMGIRPLNDKSLGVVSHCKTYDSCVLAYKQGS-RRGSYAMYLDVSHPEILAFID 167

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK TGD   R  +++ A  + D FM+ + +        P                  ++
Sbjct: 168 IRKPTGDYNMRCLNIHNAICLSDKFMEIIER----CTEDPSA----------------DD 207

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHS 581
                D     V + +SA  +W+K++ M  +TG P++ F D CN             +  
Sbjct: 208 SWDLVDPSTGVVKQTVSAKLIWQKIIEMRMQTGEPYLCFVDACNRDMNPYQKARGMKIEQ 267

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID---- 637
           SNLCTE+ + ++   +++C L S+N+  +       +      I   + +LDNV+     
Sbjct: 268 SNLCTEVIVPTNETRSSLCCLASVNIEKYEE-----WKNNERFIGDTMEMLDNVLTEFER 322

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
               H  ++   S    R IG+G++GF S L  + +   S EA  +  E  ++++     
Sbjct: 323 KATSHRFDRVNDSVKKERNIGIGVLGFHSYLQSVGVSIESEEAQRVNIEIFKWLNETCDK 382

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            ++EL   RG      GS                                          
Sbjct: 383 YNLELGSRRGTPEDIAGS------------------------------------------ 400

Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           G R +  MA+APTAT + I G  S SI+P   N+Y +  +SG     N  L      +  
Sbjct: 401 GRRFAYTMAVAPTATTSIIMGNTSPSIEPFRANVYRQDTVSGSQFNKNKNLDRLFDSKGY 460

Query: 816 WDE---AMISDLKYHDGSIGNIER--IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
             +    + + +  +DGS+ +++   I    K +  T  E++   L+E A+ R K+IDQ 
Sbjct: 461 GPKLKAKLWTSIVANDGSVQHLDERFITKSEKDVFKTFIEVEQSKLVELAAGRHKYIDQG 520

Query: 871 QSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           QSL L +  +     +  I+ QAW  GLKT YYLRS   +  +K      
Sbjct: 521 QSLTLTFGPDEPVANIHRIHLQAWKSGLKTMYYLRSAKISRADKLNADDP 570


>gi|332753392|gb|EGJ83772.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri 4343-70]
 gi|333000677|gb|EGK20254.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           flexneri K-218]
          Length = 714

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 175/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  SP    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRASPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    + T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|331684293|ref|ZP_08384885.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
 gi|331077908|gb|EGI49114.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H299]
          Length = 714

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 175/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDIERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|161508075|ref|YP_001578042.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus DPC 4571]
 gi|160349064|gb|ABX27738.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC
           4571]
          Length = 729

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 181/750 (24%), Positives = 316/750 (42%), Gaps = 79/750 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++ T  + E  NY             +E      +   +    +   L  E   
Sbjct: 15  DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 65

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 66  YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 125

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 126 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 182

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 183 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 242

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 243 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 302

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q       + +  ISA   ++ +  + 
Sbjct: 303 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPCIKKTFISARKFFQTIAEVQ 359

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 360 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 419

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL S +  +V+ L+ V    +       KK N  +RAIGLG 
Sbjct: 420 LGSLNIAAAMNSA----DKLGSLVSDSVQALNRVARSSDLDCAPSIKKGNKANRAIGLGA 475

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA++ GA+  FK S +  G 
Sbjct: 476 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 535

Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I          + E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 536 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 595

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +   +     V ++                           
Sbjct: 596 SYLSSCTPSLQPVVAPVETRKEAALGRIYVPAY--------------------------- 628

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L+L++  + + L+  Y 
Sbjct: 629 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFLEDNATTRDLNKAYI 685

Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            A+     + YY+R R       E  T   
Sbjct: 686 YAFKKRCNSIYYVRIREKVLAGSENLTADE 715


>gi|314955749|gb|EFT00149.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL027PA1]
          Length = 950

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 135/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   QLS+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQLSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++ A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835
             I+P +  + + K    G   +VN  +   LK    +       +  +   +GS+    
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616

Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y +
Sbjct: 617 DLDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYME 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            W +GLK     R         S  K  + +  A P            +P S
Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|307547023|ref|YP_003899502.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
 gi|307219047|emb|CBV44317.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas
           elongata DSM 2581]
          Length = 728

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 182/724 (25%), Positives = 295/724 (40%), Gaps = 87/724 (12%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  K  AR    +   +     +   +K  +              +EEG     + E   
Sbjct: 49  DADKEAARQYFLQHVNQNTVFFHTLEEKLDY-------------LVEEGYYEGEILEQYD 95

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332
              +  L +     +     +LG    Y  Y L   +G R  E  +     VA+ LA  +
Sbjct: 96  ASFVKALFDQAYALKFRFQSFLGAFKYYTSYTLKTFDGRRYLERFEDRVCMVALTLARGD 155

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391
              E  A    + +    F  +TPT  N G +   +L SCFL  + D++  I  A+    
Sbjct: 156 ---EALARTLVDEILHGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAINSAL 212

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   Y
Sbjct: 213 QLSKRGGGVAFSLSNIRESGAPIKRIANQSSGVIPIMKLLEDAFSYANQLGARQGAGAVY 272

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 273 LNVHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEPMYLFSP---YDVE 329

Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F      E Y+   D   I+  +   A  L++ +  + FE+G+P++ F+D  N 
Sbjct: 330 RVYGVPFGDISVTEKYQEMVDDARIRKTKT-DARELFQTLAELQFESGYPYVLFEDTANR 388

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFD 617
                  G ++ SNLC+EI   +S  E               CNLGS+N+         D
Sbjct: 389 --DNPIAGRINMSNLCSEILQVNSPSEYDDDLDYRHTGEDISCNLGSLNIARV-----MD 441

Query: 618 YDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
                +++ TAVR L  V ++ +  ++    ++N    AIGLG M     L   HI Y S
Sbjct: 442 SPDFGTSVETAVRALSAVSEMSDIRSVPSIAEANARSHAIGLGQMNLHGFLAREHIHYGS 501

Query: 677 PEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR-- 733
            E ++  +     I++HA+ AS  LA ER   ++ F+ S +  G +         + R  
Sbjct: 502 EEGLDFTNIYFYTITYHAVRASNRLAIERGERFAGFENSAYASGSYFDKYTENEWQPRTQ 561

Query: 734 ------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                 D   +   +R  W ELK  V   G+ N N  A+ PT +I+ I   + SI P   
Sbjct: 562 RVRELFDNAGIQIPTREDWRELKASVMQYGLFNRNLQAVPPTGSISYINHATSSIHPVVS 621

Query: 788 NLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            + ++     G       +L                                DD +  + 
Sbjct: 622 KIEIRKEGKLGRVYYPAPYL-------------------------------NDDNQDYYR 650

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905
            A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R 
Sbjct: 651 DAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYVRL 710

Query: 906 RSAT 909
           R A 
Sbjct: 711 RQAA 714


>gi|260448267|gb|ACX38689.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli DH1]
          Length = 701

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFTHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|307314436|ref|ZP_07594041.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|306906004|gb|EFN36525.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli W]
 gi|323377463|gb|ADX49731.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli KO11]
          Length = 714

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F   TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTTVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|331669413|ref|ZP_08370259.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA271]
 gi|332280667|ref|ZP_08393080.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
 gi|331063081|gb|EGI34994.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA271]
 gi|332103019|gb|EGJ06365.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp.
           D9]
          Length = 714

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|294155963|ref|YP_003560347.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           crocodyli MP145]
 gi|291600345|gb|ADE19841.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           crocodyli MP145]
          Length = 718

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 170/716 (23%), Positives = 288/716 (40%), Gaps = 80/716 (11%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
               AR  ++                  + ++     E F   ++ G     L +     
Sbjct: 36  DHEAARLYMKHH-------------ALPNTKVFNSIKERFDYLVKHGYYEDELVKKYNIK 82

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           D+  L             ++G    Y+ Y L        + Q    R  M          
Sbjct: 83  DIEKLRQYAIDYHFKFTSFMGALKFYNAYCLKSFDDTEYLEQYE-DRALMNALFIGDGNV 141

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A      + S  +  +TPT  N+G +   +  SC+L  V D++  I   +  +  L+K
Sbjct: 142 EVAQATLEEIMSGRYQPATPTFLNAGKKQRGEYISCYLLRVEDNMESIARGISTSLQLSK 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R LGA I     ++ G++P +K+  D+    NQ G+R+GA   YL   
Sbjct: 202 RGGGVALCLTNLRELGAPIKNIQNQATGIVPVMKILEDSFSYANQLGQRQGAGVVYLSAH 261

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DV  FLD ++   D++ R   ++    +PD+  +    N    LFSP +V      YG
Sbjct: 262 HPDVMTFLDTKRENADEKIRIKSLSLGLVLPDITFELAKNNEDMALFSPYDVQRE---YG 318

Query: 516 KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           K F       E         + +  ISA  L++ +  + FE+G+P++ F D  N RS   
Sbjct: 319 KAFSDISITKEYYNMLNNKNIKKTFISARKLFQTIAELHFESGYPYLLFDDTVNDRSA-- 376

Query: 575 HVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLA 622
           H G +  SNLC+EI   SS              E   CNLGS+N+           D + 
Sbjct: 377 HPGRIIMSNLCSEIAQPSSETTYNPDLSFVKLGEDIACNLGSMNIDKLMQAGNKFSDSIY 436

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             I     +  N    +       +  N  +RAIGLG M     L    I Y + EAVE 
Sbjct: 437 RAIYALNHIATNS---DLSAAPSIQNGNKRNRAIGLGAMNLHGFLSTNSIYYNTKEAVEF 493

Query: 683 ADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEV--------- 732
            D      ++H+  AS +LA+E  G +++F+ + +  G +         +          
Sbjct: 494 TDLFFYTFAYHSFKASNKLAKEGFGKFANFENTKFATGEYFDKYTKAKDDEYKPKSQIVA 553

Query: 733 --RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
               +  ++  ++  W EL K ++  G+ NS+ MAIAPT +I+ + G + S+ P   ++ 
Sbjct: 554 ELFKKFDVHIPTKQEWKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTPSLQPVVADVE 613

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-TAF 849
           V+         V ++                              +I ++ KK +   A+
Sbjct: 614 VRKEGKLGRVYVPAY------------------------------KISEENKKYYQMGAY 643

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           E+ P+ +I+  +  QK IDQA SL L++ +  + + L+  Y  A+     + YY+R
Sbjct: 644 EVGPLPIIDVVAAAQKHIDQAISLTLFVKDTVTTRDLNKAYIYAFKQKCASIYYVR 699


>gi|183981656|ref|YP_001849947.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium marinum M]
 gi|183174982|gb|ACC40092.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium marinum M]
          Length = 721

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 177/737 (24%), Positives = 299/737 (40%), Gaps = 79/737 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEY 255
           + +S   +  E +Y  + A   L       +  R+VL       Q    + +      E 
Sbjct: 10  VTTSAHALPGETDYHALNAMLNLYDADGKIQFDRDVLAARQFFLQHVNQNTVFFHNQDEK 69

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314
               I E    R + +      +  L +    ++     +LG    Y  Y L   +G R 
Sbjct: 70  LDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRY 129

Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
            E  +   + VA+ LA  +      A +  + +    F  +TPT  NSG +   +  SCF
Sbjct: 130 LERFEDRVVMVALTLASGDAT---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCF 186

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+  
Sbjct: 187 LLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLE 246

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 247 DSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFEL 306

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
             +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ +  
Sbjct: 307 AKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDSRIRKTKIKAREFFQTLAE 363

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAV 599
           + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +   
Sbjct: 364 LQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDIS 421

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   AIGL
Sbjct: 422 CNLGSLNIART-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGL 476

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717
           G M     L   HI Y S E V+  +     + +HA+ AS  +A ERG  +  F  S + 
Sbjct: 477 GQMNLHGYLAREHIFYGSEEGVDFTNIYFYAVLYHALRASNRIAVERGTRFKGFDQSKYA 536

Query: 718 QGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+ PT
Sbjct: 537 SGEFFDKYTERVWEPKTEKVRQLFADAGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPT 596

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G       ++ N                    
Sbjct: 597 GSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTN-------------------- 636

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                      +    +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++ 
Sbjct: 637 -----------ENLDYYQDAYEIGYEKIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNK 685

Query: 888 IYRQAWLMGLKTTYYLR 904
               AW  G+KT YY+R
Sbjct: 686 AQIYAWRKGIKTLYYIR 702


>gi|323467362|gb|ADX71049.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus H10]
          Length = 727

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 179/750 (23%), Positives = 314/750 (41%), Gaps = 79/750 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++ T  + E  NY             +E      +   +    +   L  E   
Sbjct: 13  DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 63

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 64  YLVDNNYYDKKVLDLYTPKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 123

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 124 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 180

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 181 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 240

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 241 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 300

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q       + +  ISA   ++ +  + 
Sbjct: 301 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPCIKKTFISARKFFQTIAEVQ 357

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 358 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 417

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL   +  +V+ L+ V    +       KK N  +RAIGLG 
Sbjct: 418 LGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDCAPSIKKGNKANRAIGLGA 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA++ GA+  FK S +  G 
Sbjct: 474 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 533

Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I          + E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 534 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 593

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +         V ++                           
Sbjct: 594 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 626

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L++++  + + L+  Y 
Sbjct: 627 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 683

Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            A+     + YY+R R       E  T   
Sbjct: 684 YAFKKRCNSIYYVRVREKVLAGSENLTADE 713


>gi|15803195|ref|NP_289227.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 EDL933]
 gi|15832792|ref|NP_311565.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. Sakai]
 gi|168750918|ref|ZP_02775940.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168755420|ref|ZP_02780427.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762470|ref|ZP_02787477.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168768766|ref|ZP_02793773.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168774793|ref|ZP_02799800.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778657|ref|ZP_02803664.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168800560|ref|ZP_02825567.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195938429|ref|ZP_03083811.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808050|ref|ZP_03250387.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208813711|ref|ZP_03255040.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819046|ref|ZP_03259366.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398305|ref|YP_002272141.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|217327374|ref|ZP_03443457.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254794622|ref|YP_003079459.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. TW14359]
 gi|291284008|ref|YP_003500826.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|12517114|gb|AAG57785.1|AE005496_8 ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363009|dbj|BAB36961.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|187769664|gb|EDU33508.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188014971|gb|EDU53093.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189003146|gb|EDU72132.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357239|gb|EDU75658.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189361996|gb|EDU80415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189367236|gb|EDU85652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189377190|gb|EDU95606.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208727851|gb|EDZ77452.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734988|gb|EDZ83675.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208739169|gb|EDZ86851.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159705|gb|ACI37138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209762248|gb|ACI79436.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762250|gb|ACI79437.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762252|gb|ACI79438.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762254|gb|ACI79439.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|209762256|gb|ACI79440.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli]
 gi|217319741|gb|EEC28166.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254594022|gb|ACT73383.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|290763881|gb|ADD57842.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|320189006|gb|EFW63665.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC1212]
 gi|320646029|gb|EFX15006.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. 493-89]
 gi|320651329|gb|EFX19760.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H- str. H 2687]
 gi|320656720|gb|EFX24608.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320662263|gb|EFX29660.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667314|gb|EFX34272.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326338610|gb|EGD62436.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1044]
 gi|326342862|gb|EGD66630.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. 1125]
          Length = 714

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 292/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +    +    + +     EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|327189836|gb|EGE56974.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CNPAF512]
          Length = 734

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 184/739 (24%), Positives = 299/739 (40%), Gaps = 85/739 (11%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             L+   + +   L + E        R  L+K          +   + T      L  + 
Sbjct: 32  EALDYHALNAMLNLYDDE-------GRIQLDKDHMAAKQYFLQHVNQNTVF-FHNLREKL 83

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313
                E   +  +L +   +F          Y R F F  +LG    Y  Y L   +G R
Sbjct: 84  DYLVTEGYYEQEVLDQYSFNFVRDLFDQA--YARKFRFPTFLGAFKYYTSYTLKTFDGKR 141

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N+G +   +L SC
Sbjct: 142 YLERYEDRICMVALTLARGD---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSC 198

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K+ 
Sbjct: 199 FLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLL 258

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +
Sbjct: 259 EDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFE 318

Query: 492 RVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
               N    LFSP +V  ++            Y      A   +    +KI A   ++ +
Sbjct: 319 LAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARISK----KKIKAREFFQVL 374

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N  +P   VG +  SNLC+EI   S + E             
Sbjct: 375 AEIQFESGYPYIMFEDTVNRANPI--VGRISMSNLCSEILQVSEASEYNDDLSYKHLGKD 432

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+ A       D      TI T++R L  V D+ +  ++   +K N    AI
Sbjct: 433 ISCNLGSLNIAAA-----MDTADFGKTIETSIRALTAVSDMSHIASVPSIEKGNDESHAI 487

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E V+  +     +++HAI AS  LA ER  ++  F+ S 
Sbjct: 488 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGQSFKGFENSK 547

Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +         +          D+  ++  ++  W  LK  V T G+ N N  A+ 
Sbjct: 548 YASGDYFDKYTEQEWKPATGKVQALFDDAGIHIPTQDDWAALKTAVMTSGLYNQNLQAVP 607

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       F+ N+                 
Sbjct: 608 PTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPFMTND----------------- 650

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                             +  A+EI    +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 651 --------------NLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 696

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 697 NKAQIYAWRKGIKTIYYIR 715


>gi|300932706|ref|ZP_07147962.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           resistens DSM 45100]
          Length = 720

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 175/743 (23%), Positives = 303/743 (40%), Gaps = 73/743 (9%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++ S++   +         ++ +Y  + A   L      +     ++       +     
Sbjct: 1   MTTSEIGKTVAEPVSE--SEQLDYHALNAMLNLYDKNGNIQFDKDREAANQFFLQHVNQN 58

Query: 253 PEYFCRYIEEGVKARLLHES----MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-- 306
             +F    E+              + ++D  ++ +  K      F +      Y  Y   
Sbjct: 59  TVFFHDLQEKLHYLVENKYYDKSVLDNYDFPFVKSLFKRAYAKKFRFQSFLGAYKYYTSY 118

Query: 307 --LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                NG R  E  +     VA+GLA         A +  + +    F  +TPT  N G 
Sbjct: 119 TLKTFNGKRYLERFEDRVCMVALGLAAG---NRALAEDLVDEIMDGRFQPATPTFLNIGK 175

Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               +  SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S 
Sbjct: 176 AQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREAGAPIKHIENQSS 235

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++  
Sbjct: 236 GVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLG 295

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKI 540
             IPD+  +    N    LFSP    D+  +YGK F      E+YE   +   I+  + I
Sbjct: 296 VVIPDITFELAKNNDDMYLFSP---YDVERIYGKAFADVPVSEHYEEMVEDPRIRKQK-I 351

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSS 593
           +A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI         N+ 
Sbjct: 352 NARQFFQTLAEIQFESGYPYIMFEDTVNRANPI--EGRITHSNLCSEILQVSTPSVFNAD 409

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652
                + +  S NL +       D +  + TI TA+R L  V D  +  ++   ++ N  
Sbjct: 410 LTYETIGDDISCNLGSLNIAKAVDSENFSKTIETAIRGLTAVADQTSIDSVPSVRQGNDN 469

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L   HI Y S EA++  +     + + AI AS  +A+ER  ++++F
Sbjct: 470 SHAIGLGQMNLHGFLGREHIHYGSEEALDFTNVYFAAVMYEAIKASNTIAKERGESFTNF 529

Query: 712 KGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNC 763
           + S +  G F     P +   +   VR+ +    +   +   W  LKK V+  G+ N N 
Sbjct: 530 ENSDYASGEFFDRYDPAEFQPITERVREIIENSSIQVPTADDWAALKKSVQEHGLYNRNL 589

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I   + SI P    + ++     G       ++ N              
Sbjct: 590 QAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTN-------------- 635

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                            +    +  A+EI    +I++ +   K++DQ  SL L+  +  +
Sbjct: 636 -----------------ENLDYYEDAYEIGFEKIIDTYAVATKYVDQGLSLTLFFKDTAT 678

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 679 TRDINRAQIYAWRKGIKTIYYIR 701


>gi|311742740|ref|ZP_07716549.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM
           15272]
 gi|311314368|gb|EFQ84276.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM
           15272]
          Length = 970

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 132/629 (20%), Positives = 239/629 (37%), Gaps = 29/629 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E + E    E  ++L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 113 GYFTTEADAEVFEHELTHMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILN 172

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +  + G + G + F++ A+ +A  +  G   R
Sbjct: 173 WYREEGLIFKGGSGAGLNLSRIRSSKELLRSSGGTASGPVSFMRGADASAGTIKSGGATR 232

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF+  +    D  R   D      +    +  V         + 
Sbjct: 233 RAAKMVVLDVDHPDIAEFVATKAREEDKIRVLRDAGYDMDLGGADITSVQ------YQNA 286

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    ++D + +  E   E   R    GE  V   + A +LW  +    +    P I + 
Sbjct: 287 NNSIRVNDEFMRAVEDGTEFGLRGRMTGE--VIETVDARSLWNDIAEAAWACADPGIQYD 344

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
              N        G + +SN C+E        + + CNL S+NLL    ++  FD +    
Sbjct: 345 GTINDWHTSPEAGRITASNPCSEYMH----LDNSSCNLASLNLLKFLKDDGSFDTETFVK 400

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E    +   +R +G+G     + L    + Y S     +A
Sbjct: 401 AVEFIITAMDISICFADFPTEAIGDTTRAYRQLGIGFANLGALLMASGLAYDSDGGRALA 460

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739
                 ++  +   S ELA   G Y  F  +                E+R     ++A++
Sbjct: 461 GAITSLMTGTSFRRSAELAGVVGPYDGFAQNASAHERVMRKHQAANDEIRTLHSMDIAVH 520

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           R +   W +  K  +  G RNS    +APT TI  +    +  I+P +  + + K    G
Sbjct: 521 REAAKQWADNLKIGEKNGWRNSQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 580

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   LK+     E + + ++Y   +G + +   +  +  ++  TA     I 
Sbjct: 581 SMQIVNQTIPAALKKLGYAGETIEAIVEYIAENGHVVDAPGLKTEHYEVFDTAMGQRSIK 640

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q ++  A S  + L E  S +++  +Y Q W +GLK     R       
Sbjct: 641 PMGHVHMMAACQPFLSGAISKTVNLPESASVEEIKDVYFQGWKLGLKALAVYRDNCKVGQ 700

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
             S   G + K +     +         I
Sbjct: 701 PLS--DGKEAKSSGDTKVEVKEVIVEKPI 727


>gi|293415926|ref|ZP_06658566.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|291432115|gb|EFF05097.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
          Length = 714

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L +           +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFDHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTCTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|331654158|ref|ZP_08355158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
 gi|331047540|gb|EGI19617.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M718]
          Length = 714

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYPRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|300922751|ref|ZP_07138840.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|301327385|ref|ZP_07220634.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
 gi|300420936|gb|EFK04247.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 182-1]
 gi|300846039|gb|EFK73799.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 78-1]
          Length = 701

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|331674196|ref|ZP_08374956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
 gi|331068290|gb|EGI39685.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA280]
          Length = 714

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 175/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFITTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYDELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERSETFAGFKQSRYASGEYFRQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|325496275|gb|EGC94134.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           fergusonii ECD227]
          Length = 714

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 176/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+          +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAGDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G R   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+  AV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVEIAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNRT-- 741
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL    +  
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSSIT 559

Query: 742 --SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|296128312|ref|YP_003635562.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           flavigena DSM 20109]
 gi|296020127|gb|ADG73363.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           flavigena DSM 20109]
          Length = 719

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 169/675 (25%), Positives = 277/675 (41%), Gaps = 62/675 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +E       +        +  L      ++     +LG    Y  Y L   +G
Sbjct: 65  DEKLDYLVENKYYDPAVLAQYDRAFIKSLFQYAYSKKFRFQTFLGAFKYYTSYTLKTFDG 124

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +    RV M         +  A+   + + S  F  +TPT  N G     +  
Sbjct: 125 KRYLERFED---RVCMVALALAEGDQDFAMNLVDEIVSGRFQPATPTFLNLGKAQRGEPV 181

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 182 SCFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVMK 241

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 242 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 301

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I+A   ++ 
Sbjct: 302 FELAKKNEPMYLFSP---YDVERVYGVPFADVNVTEKYYEMVDDKRIRKTKINAREFFQT 358

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCN 601
           +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI       T N       V  
Sbjct: 359 LAEIQFESGYPYVMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSTFNEDLSYDHVGR 416

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D   L  T+ TA+R L  V D  N  ++   K++N    AIGLG 
Sbjct: 417 DISCNLGSMNIALSMDSPDLGKTVETAIRALTAVSDQTNIESVPSIKRANAGGHAIGLGQ 476

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y S E ++  +     +++HAI AS  LAQER A +  F+ S +  G
Sbjct: 477 MNLHGYLARERIFYGSDEGLDFTNIYFYTVAYHAIRASNLLAQERKASFFGFERSAYATG 536

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    +    + R        DE  ++  ++  W EL + V+  G+ N N  A+ PT +
Sbjct: 537 EYFTKYVEKEWKPRTARVQALFDEAGVHIPTQDDWRELAELVRVHGLYNQNLQAVPPTGS 596

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       F+ N+                     
Sbjct: 597 ISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAPFMTND--------------------- 635

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                       + +  A+EI    +I++ +   + +DQ  SL L+  +  + + L+   
Sbjct: 636 ----------NLEYYQDAYEIGFEKVIDTYAEATQHVDQGLSLTLFFKDTATTRDLNKAQ 685

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 686 IYAWKKGIKTIYYIR 700


>gi|16130589|ref|NP_417161.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89109468|ref|AP_003248.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|170082261|ref|YP_001731581.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901819|ref|YP_002927615.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli BW2952]
 gi|2507305|sp|P39452|RIR3_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha;
           AltName: Full=R1E protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|1789030|gb|AAC75722.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|85675520|dbj|BAA16539.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|169890096|gb|ACB03803.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238863479|gb|ACR65477.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli BW2952]
 gi|315137288|dbj|BAJ44447.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli DH1]
          Length = 714

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFTHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|296393702|ref|YP_003658586.1| ribonucleoside-diphosphate reductase subunit alpha [Segniliparus
           rotundus DSM 44985]
 gi|296180849|gb|ADG97755.1| ribonucleoside-diphosphate reductase, alpha subunit [Segniliparus
           rotundus DSM 44985]
          Length = 732

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 277/680 (40%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +E       + E      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 78  DEKLDYLVENEYYEPEVLERYSRPFVKGLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDG 137

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA      E+ A +    +    F  +TPT  N G +   +  
Sbjct: 138 KRYLERFEDRVVMVALALA---DGDEELACQLVEEIIEGRFQPATPTFLNCGKKQRGEPV 194

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 195 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVMK 254

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 255 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 314

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +  +    E    +KI+A   ++ 
Sbjct: 315 FELAKRNDDMYLFSP---YDVERVYGVPFAEVSVTEKYFEMVDDERIRKKKINAREFFQT 371

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI               S   +
Sbjct: 372 IAELQFESGYPYIMYEDTVNRANPI--DGRITHSNLCSEILQVSTASTFNADLSYSHVGK 429

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D      T+ T++R L +V D     ++      N    A
Sbjct: 430 DISCNLGSLNIAKT-----MDSPDFGKTVETSIRALTSVSDQTRIDSVPSIAHGNDESHA 484

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS ++A ER  A++ F+ S
Sbjct: 485 IGLGQMNLHGYLARERIHYGSEEGVDFTNIYFYTVLYHALWASNKIAVERGRAFAGFERS 544

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F    +    E +            +   ++  W+ LK  V   G+ N N  A+
Sbjct: 545 KYASGEFFDKYLNQTWEPKTERVRELFKRAKVQIPTKADWERLKDSVVAHGIYNQNLQAV 604

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N+                
Sbjct: 605 PPTGSISYINHSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLAND---------------- 648

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                              +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 649 ---------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 693

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 694 INKAQIYAWRKGIKTLYYIR 713


>gi|262203178|ref|YP_003274386.1| ribonucleoside-diphosphate reductase subunit alpha [Gordonia
           bronchialis DSM 43247]
 gi|262086525|gb|ACY22493.1| ribonucleoside-diphosphate reductase, alpha subunit [Gordonia
           bronchialis DSM 43247]
          Length = 731

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 176/736 (23%), Positives = 293/736 (39%), Gaps = 81/736 (11%)

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+   + +   L + +        R   EK R        +   + T         E  
Sbjct: 30  ELDYHALNAMLNLYDAD-------GRIQFEKDREAARQYFLQHVNQNTVFFHDL--DEKL 80

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI- 314
              +EE      +        +  L      ++     +LG    Y  Y L   +G R  
Sbjct: 81  DYLVEENYYEPEVLARYDREFVKSLFGHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYL 140

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E  +     VA+ LA         A    + +    F  +TPT  NSG +   +  SCFL
Sbjct: 141 ERFEDRVCMVALTLA---DGDTALARNLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFL 197

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D
Sbjct: 198 LRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIMKLLED 257

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 258 SFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQLA 317

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTM 552
             N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ +  +
Sbjct: 318 KANDDMYLFSP---YDVERVYGVPFADINVTDKYHEMVEDKRIRKTKIKAREFFQTLAEL 374

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVC 600
            FE+G+P+I F+D  N  +P    G +  SNLC+EI               S   +   C
Sbjct: 375 QFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSTFNDDLSYSHVGKDISC 432

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+         D   L  TI TA+R L  V D     ++   +K N+   AIGLG
Sbjct: 433 NLGSLNIAKA-----MDSPDLGQTIETAIRGLTAVSDQTAITSVPSIEKGNNDSHAIGLG 487

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718
            M     L    I Y S E ++  +     + +HA+ AS ++A+ERG  ++ F+ S +  
Sbjct: 488 QMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNKIARERGHSFAGFEKSKYAS 547

Query: 719 GVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           G F       + E           +  ++  ++  W ELK  V   G+ N N  A+ PT 
Sbjct: 548 GEFFDKYTEKVWEPETQKVRDLFGQAGIHIPTQDDWRELKAAVARDGIYNQNLQAVPPTG 607

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + ++     G       F+ N+                    
Sbjct: 608 SISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPFMDND-------------------- 647

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
                        + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++  
Sbjct: 648 -----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRA 696

Query: 889 YRQAWLMGLKTTYYLR 904
              AW  G+KT YY+R
Sbjct: 697 QIYAWRKGIKTLYYIR 712


>gi|31544247|ref|NP_852825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(low)]
 gi|5565930|gb|AAD45273.1|AF152114_1 ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           gallisepticum]
 gi|31541091|gb|AAP56393.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930286|gb|ADC30225.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           gallisepticum str. R(high)]
          Length = 722

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 183/734 (24%), Positives = 302/734 (41%), Gaps = 97/734 (13%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     I+     + + E++    L  L   +K E D  F  ++G    Y+ Y L  N 
Sbjct: 53  HERMDYLIKNDFYEKEVVENVSKEQLEELYGVIK-EFDHEFPSFMGAFKFYNSYCLKSND 111

Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
            +   E      +  A+ L  K  +           + S  F  +TPT  N+G +   + 
Sbjct: 112 GKEFYETYSERCLMNALFLGGKNFQNV---KNILIEILSGRFQPATPTFLNAGKKQRGEY 168

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SC+L  V D++  I  A+  +  L+K  GG+    T +R  GA I    G++ GVIP +
Sbjct: 169 VSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTNLREFGAPIKNIEGQASGVIPVM 228

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G+R G   AYL   H DV  FLD ++   D++ R   +     +PD+
Sbjct: 229 KILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSKRENADEKIRIKSLALGLVVPDI 288

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547
             +    N    LFSP +V      YGK F       E        ++ +  ISA   ++
Sbjct: 289 TFELAKNNEQMALFSPYDVQRE---YGKPFSDIKVTEEYHNMVNNPRIKKTYISARKFFQ 345

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597
            +  + FE+G+P++ F D  N R    + G +  SNLC+EI  +S+S E           
Sbjct: 346 TIAELHFESGYPYLLFDDTVNNR--NPNAGRIVMSNLCSEIVQSSTSTEYNEDFSIKKLG 403

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHR 654
               CNLGS+N+     +     ++   ++  A++ LD+V    N       K  N  + 
Sbjct: 404 QDISCNLGSVNIDKMMRSA----ERFEDSVYYAIKSLDHVSKSANLDCAPSVKNGNANNH 459

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           A+GLG M     L    I Y SPEA+E  D     ++++A  AS  LA E+   Y++FK 
Sbjct: 460 ALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLAYYAFKASNRLAVEQKQTYANFKT 519

Query: 714 SLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           S +  G +                    E+     +   ++  W  L + +K  G+ N++
Sbjct: 520 SKYADGSYFDKYTKCDPNTYVIKNPKIKEIFSNYKIKVPTQADWQALTEEIKKTGLANAH 579

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            +AIAPT +I+ +   + SI P    + V+    G    V                    
Sbjct: 580 LLAIAPTGSISYLSSCTPSIQPVVAPVEVR--KEGKIGRV-------------------Y 618

Query: 823 DLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
            L Y          + +   K +   A+E+ P   I+  ++ QK +DQA SL L++++  
Sbjct: 619 SLAYK---------LNEHNYKYYKDGAYELGPNPYIDICAQAQKHVDQAISLTLFMNDTA 669

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + + L+  Y +A+     + YY+R R            ++   N     D  S+      
Sbjct: 670 TTRDLNKAYIRAYKSKCASVYYVRVR---------QNVLEDSENLDWAKDQASTV----- 715

Query: 941 PSSCTSDTECEVCQ 954
                   +CE CQ
Sbjct: 716 --------DCEACQ 721


>gi|84495900|ref|ZP_00994754.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
 gi|84382668|gb|EAP98549.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
          Length = 987

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 133/637 (20%), Positives = 233/637 (36%), Gaps = 40/637 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L DR  L    +  E                + + E    E    L    F  
Sbjct: 88  RETGLKQLIDRVVLTYVKAGKE----------HDYFSSDEDAELFEHELTYALLHQVFSF 137

Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+  V D +  I    +E   + K   G G + + +R    
Sbjct: 138 NSPVWFNVGTASPQQVSACFILAVDDSMDSILNWYKEEGFIFKGGSGAGLNLSRIRSSKE 197

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H D+ EF++ +    D
Sbjct: 198 LLSS-GGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAREED 256

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +                 + +    ++D + +  E   E   +   R
Sbjct: 257 KIRALRDAGFDMDL------GGKDIVSVQYQNANNSVRVNDEFMRAVEEGTEFGLK--SR 308

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           G+  V   I A  L  K+    +E   P I + D  N        G + +SN C+E    
Sbjct: 309 GDGSVIETIDARELMGKIAKAAWECADPGIQYDDTINDWHTNPETGRITASNPCSEYM-- 366

Query: 592 SSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
             S + + CNL S+NLL    ++  FD  K        +  +D  I       E   K+ 
Sbjct: 367 --SLDNSSCNLASLNLLKFLKDDDTFDVVKFQQVAELVITAMDISICFADFPTEPIAKTT 424

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R +G+G     + L      Y S     +A      ++  A   S E+A   G Y+ 
Sbjct: 425 RDYRQLGIGYANLGALLMATGHGYDSDGGRALAASITSLLTGAAYKRSAEIAGVVGPYAG 484

Query: 711 FKGSLWDQGVFPIDSIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           +  +                 +R     +  ++R +   WD + K  +  G RN+    +
Sbjct: 485 YARNADAHKRVMRKHASANDSIRTMQTMDKDIHRAATKAWDAVVKVGEKNGYRNAQASVL 544

Query: 767 APTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           APT TI  +    +  I+P +  + + K    G   +VN  +   L++   + E  +  +
Sbjct: 545 APTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNLTIPRALRKLG-YTEETVEAI 603

Query: 825 KYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                  G + +   +  +  +I  TA     I  M  +   +  Q ++  A S  + L 
Sbjct: 604 VEFIADKGHVIDAPGLKTEHYEIFDTAMGARSISAMGHVRMMAATQPFLSGAISKTVNLP 663

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            + S +++  +Y Q W MGLK     R         S
Sbjct: 664 EDASVEEIQDVYMQGWKMGLKALAVYRDSCKVGQPLS 700


>gi|296118679|ref|ZP_06837255.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968168|gb|EFG81417.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 723

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 170/754 (22%), Positives = 295/754 (39%), Gaps = 81/754 (10%)

Query: 180 IVLSETYKNMYDGLSESD-LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
            V  +  K + + +  S+ L+   + +   L +++          +   + RE     + 
Sbjct: 3   QVTQQLGKTVAEPVKTSEKLDFHALNALLNLYDEDGK--------IQFDMDREAANQYF- 53

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLG 297
                 H     +Y       IE  V+ +     +++ +D  ++ +  K    F F +  
Sbjct: 54  ----LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKS 109

Query: 298 LQILYDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
               Y  Y        +G R  E  +    RV+M            A    + + S  F 
Sbjct: 110 FLGAYKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQ 166

Query: 353 CSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPT  N+G     +L SCFL  + D++  I  A+  +  L+K  GG+    + +R  G
Sbjct: 167 PATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESG 226

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D
Sbjct: 227 APIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENAD 286

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQA 529
           ++ R   ++    IPD+      +N    LFSP +V  ++            Y       
Sbjct: 287 EKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVTEHYAEMVEDP 346

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI 
Sbjct: 347 RITK----KKINARHFFQTVAELQFESGYPYIMFEDTVNDANP-VKTGRINMSNLCSEIL 401

Query: 590 LNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCH 641
             +S                 S NL +       D    + T+  A+R L  V D     
Sbjct: 402 QVNSPSSFNADLSYEQMGSDISCNLGSMNIALAMDSPDFSGTVEAAIRGLTAVADKTAID 461

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
           ++   +  N    AIGLG M     L   HI Y S E ++  +     + + A+ AS ++
Sbjct: 462 SVPSIRHGNDQSHAIGLGQMNLHGFLGREHIYYGSEEGLDFTNAYFAAVMYAALRASNKI 521

Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKR 752
           A+ER   +S FK S +  G F               +  +  +  ++  S   W +LK +
Sbjct: 522 AKERGETFSEFKDSEYASGAFFDRYDPAEFAPQTDKVKALFADSTIHTPSAEDWADLKAQ 581

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811
           V   G+ N N  A+ PT +I+ I   + SI P    + ++     G        + N+  
Sbjct: 582 VMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND-- 639

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                               A+EI    +I++ +   K++DQ  
Sbjct: 640 -----------------------------NLDYFQDAYEIGHEKIIDTYAIATKYVDQGL 670

Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 671 SLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIR 704


>gi|325969910|ref|YP_004246101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta sp. Buddy]
 gi|324025148|gb|ADY11907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta sp. Buddy]
          Length = 836

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 148/634 (23%), Positives = 263/634 (41%), Gaps = 63/634 (9%)

Query: 311 GSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
              +E  P     RVA G+A  E +  + +   EF  LL  + F+     L  +GT    
Sbjct: 79  DKPLEIDPAQMLARVAKGIASIEKQEVRTQWETEFNWLLEDWKFVPGGRILTGAGTDQNL 138

Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +C++   P D   GI  +L +   +    GG+G + + +R   +++ G NG+S G +
Sbjct: 139 TYFNCYVIPSPKDSRGGIIASLGQMTEIMSRGGGVGMNISSLRPRHSYVKGVNGRSSGSV 198

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            +  + +     + QGG R+GA+   L  WH D+ +F++ ++  G    +  + N +  I
Sbjct: 199 SWGGLFSFVTGLIEQGGSRRGALMLILNVWHPDIIDFINSKREMG----KITNANISVGI 254

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V ++A W  + PD     ++          +  + +A+  ++ V++   A  +
Sbjct: 255 TDDFMEAVRKDANWDTYFPDTTDPAYNTEWDG-----DINKWKANGHKVVVYQTQKAKKI 309

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   + +  P + F D  N  S   +   + S+N C E  L        VCNLGSI
Sbjct: 310 WDAIVESAWASAEPGVFFIDRYNKMSNSWYYSTIQSTNPCGEQGLPP----WGVCNLGSI 365

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL     N +  Y  L   +R AVR LDNVID   +  E+ KK   + R IGLG MG   
Sbjct: 366 NLSRFVENKKVLYKDLGRAVRAAVRFLDNVIDDTPYFFEENKKQQLSERRIGLGTMGLAD 425

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L  + +PY S E++   +E  +FI   + S S +LA+E+G++  F              
Sbjct: 426 MLIKMELPYGSEESLTFIEELYKFICIESYSESSDLAKEKGSFPFFDA------------ 473

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                   ++L  +   +   +E+  +V+  G+RN   +  APT T   +   S  I+P 
Sbjct: 474 --------EKLLQSGFMKQMPEEICTKVRKQGLRNVTLLTQAPTGTTGTMVNTSTGIEPY 525

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           Y   + ++   G                       I  +K +D  +              
Sbjct: 526 YFWEWERTGRMGSN---------------------IERVKVYDDWVKAHPG--QKKPAYF 562

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +A ++ P   ++  +  QKW+D + S       E + ++   +Y   + +G K     R
Sbjct: 563 VSAMDLAPEGHVKVQAAIQKWVDSSISKTGNTPKEYTIEQTGKLYELLYDLGCKGGTTYR 622

Query: 905 SRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             S  T V  +  +  +       V   ++    
Sbjct: 623 DGSRDTQVLTAKKEEKEELKEEKLVVSRSTEPKP 656


>gi|269957221|ref|YP_003327010.1| ribonucleoside-diphosphate reductase subunit alpha [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305902|gb|ACZ31452.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 718

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 170/678 (25%), Positives = 276/678 (40%), Gaps = 74/678 (10%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--INGS 312
               +E         E      +  L   L Y +DF F  +LG    Y  Y L       
Sbjct: 67  LAYLVENKYYEAATLEKYSPAFVKEL-FQLAYSKDFRFDTFLGAFKYYTSYTLKTFDGKK 125

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
            +E  +    RV+M         E+ A +    + +  F  +TPT  N G     +  SC
Sbjct: 126 YLERFED---RVSMVALGLADGDEQLARDIVEEVVAGRFQPATPTFLNIGKAQRGEPVSC 182

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 183 FLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIQNQSSGVIPVMKLL 242

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 243 EDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDVTFE 302

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKML 550
              QN    LFSP    D+  +YG  F     + +      + ++ +  ISA   ++ + 
Sbjct: 303 LAKQNKDMHLFSP---YDVERVYGVPFADVSISEKYDELVADDRIRKTTISARDFFQTLA 359

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598
            + FE+G+P+I F+D  N  +P    G +  SNLC+EI                      
Sbjct: 360 ELQFESGYPYIMFEDTVNKANPI--KGRITHSNLCSEILQVSTPSTFNEDLSYDHVGRDI 417

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+         D      TI TA+R L  V D  +  ++   K +N    AIG
Sbjct: 418 SCNLGSLNIAKA-----MDSPDFGHTIDTAIRALTAVSDQTSIESVPSVKHANELGHAIG 472

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    + Y S E V+  +     +++HAI+AS  LA ER  A+  F+ S +
Sbjct: 473 LGQMNLHGYLARERVFYGSEEGVDFTNIYFYTVAYHAIAASNRLAIERGRAFGGFEDSKY 532

Query: 717 DQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +               +A++  +  +   ++  W  LK  V   G+ N N  A+ P
Sbjct: 533 ATGEYFDKYTEQEWTPATARVAQLFADAGVAIPTQDDWRALKASVMEHGIYNQNLQAVPP 592

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++     G       F+ N+                  
Sbjct: 593 TGSISYINNSTSSIHPVPAKIEIRKEGKLGRVYYPAPFMTND------------------ 634

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                          + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 635 -------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTVTTRDVN 681

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 682 RAQIYAWRKGIKTLYYIR 699


>gi|111023402|ref|YP_706374.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus
           jostii RHA1]
 gi|110822932|gb|ABG98216.1| ribonucleoside-diphosphate reductase [Rhodococcus jostii RHA1]
          Length = 693

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 169/680 (24%), Positives = 286/680 (42%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +EE      + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLVEENYYEPEVLDQYSRAFVKSLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E+ A +  + + +  F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVCMVALTLAAGD---EELATKLVDEIIAGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    + VR  GA I     +S GVIP +K
Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKKIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ + KI A   ++ 
Sbjct: 276 FELAKKNEDMYLFSP---YDVERIYGVPFADVNVTEKYYEMVDDKRIRKSKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               S   +
Sbjct: 333 IAELQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYSEVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D  + +++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFARTIEVSIRALTAVSDQTHIYSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + FHA+ AS  +A ERG  +  F  S
Sbjct: 446 IGLGQMNLHGYLARERIYYGSDEGIDFTNIYFYTVVFHAVRASNRIAIERGTHFKGFPQS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       + E +         E  ++  ++  W ELK  V+  G+ N N  A+
Sbjct: 506 KYASGEYFDKYTDQVWEPKTERVRQLFAESGVHIPTQDDWRELKASVQKYGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       +L N+                
Sbjct: 566 PPTGSISYINYSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    ++++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 655 INKAQIYAWRKGIKTLYYIR 674


>gi|117928683|ref|YP_873234.1| vitamin B12-dependent ribonucleotide reductase [Acidothermus
           cellulolyticus 11B]
 gi|117649146|gb|ABK53248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidothermus cellulolyticus 11B]
          Length = 1098

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/590 (20%), Positives = 214/590 (36%), Gaps = 29/590 (4%)

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           ++ +CF+ +V D +  I    +E  ++ K   G G + + +R     +    G + G + 
Sbjct: 306 RVHNCFILSVDDTMESILDWYKEEGLIFKGGSGAGVNLSRIRSSKELLSS-GGTASGPVS 364

Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           F++ A+ +A  +  G   R+ A    L+  H D+EEF++ +    +  R   D      +
Sbjct: 365 FMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFIETKVREEEKIRVLRDAGFDMDL 424

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
                            + +    + D + +  E       R    GE  V   + A  L
Sbjct: 425 ------GGRDLYSVQYQNANNSVRVSDEFMRAVERGESFGLRARTTGE--VIETVDARKL 476

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +RKM    +    P I + D  N        G + +SN C+E        + + CNL S+
Sbjct: 477 FRKMAEAAWACADPGIQYDDTINDWHTCPESGRITASNPCSEYMH----LDNSSCNLASL 532

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+     + +FD D     +   +  +D  I       EK   +    R +G+G     
Sbjct: 533 NLMKFLTDDGRFDIDTFIKVVELVITAMDISICFADFPTEKIADTTRRFRQLGIGYANLG 592

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L      Y S     +A      ++  A   S ELA   G Y  +  +          
Sbjct: 593 ALLMATGHAYDSDGGRALAAAITSLMTATAYKRSAELAAIVGPYDGYARNAEAHKRVMRK 652

Query: 725 SIGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +R    M+R     +   W E     +  G RNS    +APT TI       +
Sbjct: 653 HAAASDALRTIGEMDRAIAERACQMWRECLTLGEQHGWRNSQASVLAPTGTIGLAMDCDT 712

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836
             I+P    + + K    G   +VN  +   L+     +E + + ++Y    GS+     
Sbjct: 713 TGIEPDLALVKFKKLVGGGSMQIVNRTVPRALRTLGYPEEQVEAIVEYISEHGSVVGAPG 772

Query: 837 IPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +  +  ++   A     I PM  +   +  Q +I  A S  + + E  + + ++ IY Q 
Sbjct: 773 LRPEHYEVFDCAMGDRAISPMGHVRMMAAVQPFISGAISKTVNMPESATVEDVEEIYFQG 832

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           W +GLK     R+        S     + K++A              +P 
Sbjct: 833 WKLGLKALAIYRNNCKVGQPLS--DAKEKKVSAAVEGSHEHRPVRRRLPK 880


>gi|237748699|ref|ZP_04579179.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           OXCC13]
 gi|229380061|gb|EEO30152.1| ribonucleotide reductase large subunit [Oxalobacter formigenes
           OXCC13]
          Length = 963

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 145/616 (23%), Positives = 260/616 (42%), Gaps = 73/616 (11%)

Query: 316 MPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFL 373
             +    RVA  LA  E  + +K+  E +       F+ +      +GT     L +CF+
Sbjct: 40  SVEEVMERVAQALAEVEAPKNKKKYAEEFLWALQNGFIPAGRVSSAAGTGLQTTLINCFV 99

Query: 374 TTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
             V D +        GI+ AL + A   +  GG+G +++ +R  GA + GT   + G I 
Sbjct: 100 QPVGDSITNMVDGKPGIYTALAQAAETMRRGGGVGYNFSSIRPRGAKVRGTGSSASGPIS 159

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++KV + +   V   G R+GA  A L   H D+ EF+ +++    ++ +  + N +  + 
Sbjct: 160 YMKVFDRSCETVESAGARRGAQMAVLNIDHPDIVEFITIKQ----EQNQLSNFNVSVGVT 215

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D FM+ V  +  + L    E ++             E    +   G+  V+ K+ A  +W
Sbjct: 216 DKFMQAVESDGDFELAHVAEPNN----------ELKEKGSYKRADGK-WVYSKVKARDIW 264

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             ++   +    P + + D  N  +   +  V+ ++N C E  L     +   C LGS+N
Sbjct: 265 DLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIEATNPCGEQPLP----DYGCCCLGSLN 320

Query: 607 LLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L +        +  FD++  A   + AVR+LDNV+      +E+  K     R IGLG  
Sbjct: 321 LTSFVTAPFSAHPLFDFNLFARVTKIAVRMLDNVLTATKWPLEEQAKEAAAKRRIGLGFT 380

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   AL +L I Y S EA  ++ E  + +   A S S++LA+ERGA+       + +G F
Sbjct: 381 GLGDALIMLGIRYDSEEARILSSEISKAMRDAAYSGSIDLAKERGAFPMLDVENYLKGGF 440

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVS 779
                                    +E+K +++  G+RNS+  +IAPT TI+       S
Sbjct: 441 V--------------------SRLPEEMKAQIRKHGIRNSHLTSIAPTGTISLAFADNAS 480

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P++   Y +              + +  +++   E     +    G+  ++ ++PD
Sbjct: 481 NGIEPAFSWFYNRVKR-----------MPDGSKKNYTVEDHAYRIYRSMGN--DVSKLPD 527

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
                  +A EI  +  +   +    +ID A S  + +  E   +    +Y +AW  GLK
Sbjct: 528 ----YFVSALEISAIDHMLMVAAVAPYIDAAISKTVNVAEEYPYEDFKNLYMEAWKKGLK 583

Query: 899 TTYYLRSRSATSVEKS 914
                R  +  +   S
Sbjct: 584 GITTYRPNNVRTAILS 599


>gi|193065976|ref|ZP_03047035.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|260845323|ref|YP_003223101.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|192926390|gb|EDV81025.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E22]
 gi|257760470|dbj|BAI31967.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|323159822|gb|EFZ45794.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E128010]
          Length = 714

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|50842509|ref|YP_055736.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium
           acnes KPA171202]
 gi|50840111|gb|AAT82778.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium
           acnes KPA171202]
 gi|313764463|gb|EFS35827.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL013PA1]
 gi|313812950|gb|EFS50664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL025PA1]
 gi|313816001|gb|EFS53715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL059PA1]
 gi|313827770|gb|EFS65484.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL063PA2]
 gi|314915455|gb|EFS79286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL005PA4]
 gi|314918261|gb|EFS82092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA1]
 gi|314920074|gb|EFS83905.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL050PA3]
 gi|314931597|gb|EFS95428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL067PA1]
 gi|314958164|gb|EFT02267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL002PA1]
 gi|314967825|gb|EFT11924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL037PA1]
 gi|315098528|gb|EFT70504.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL059PA2]
 gi|315101114|gb|EFT73090.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL046PA1]
 gi|315105661|gb|EFT77637.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL030PA1]
 gi|327450790|gb|EGE97444.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA3]
 gi|327453865|gb|EGF00520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL083PA2]
 gi|328754209|gb|EGF67825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL087PA1]
 gi|328754540|gb|EGF68156.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL025PA2]
          Length = 950

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 134/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++ A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835
             I+P +  + + K    G   +VN  +   LK    +       +  +   +GS+    
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616

Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y +
Sbjct: 617 DLDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYME 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            W +GLK     R         S  K  + +  A P            +P S
Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|315108335|gb|EFT80311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Propionibacterium acnes HL030PA2]
          Length = 950

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 134/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    + + +    E   LL   +F  ++P  FN   T   Q+S+CF+ +V D +  I  
Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +    D  R                   +  + N +  +
Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q   + L S  E                            KV   + A  L
Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+    +E   P + + D  N      + G +++SN C+E      S + + CNL S+
Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL     N+ FD +K    +   +  +D  I       E   K+    R +G+G     
Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L  L + Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497

Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +     ++ A+   ++  WD++ K   T G RN+    +APT TI  +    +
Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835
             I+P +  + + K    G   +VN  +   LK    +       +  +   +GS+    
Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616

Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            + +   ++   A     I PM  +   +  Q ++  A S  + L E  + + +  +Y +
Sbjct: 617 DLDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYME 676

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            W +GLK     R         S  K  + +  A P            +P S
Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728


>gi|92112512|ref|YP_572440.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91795602|gb|ABE57741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 723

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 169/746 (22%), Positives = 302/746 (40%), Gaps = 71/746 (9%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             +L         +   +  +Y  + A   L   +  +     ++  +    +       
Sbjct: 4   TVELTEKTPAVEASRATQTLDYHALNAMLNLYDDQGRLQLDADREASRQYFLQHVNQNTV 63

Query: 255 YFCRYIEEGVK----ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF---- 306
           +F    E+            E +  +D  ++ +  +      F +      +  Y     
Sbjct: 64  FFHTLAEKLEYLVAENYYEQEVLDQYDFPFIKSLFERAYAVKFRFQSFLGAFKYYTSYTL 123

Query: 307 LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
              +G R  E  +     VA+ LA  +   E  A +  + +    F  +TPT  N G + 
Sbjct: 124 KTFDGRRYLERFEDRVCMVALTLAQGD---EALARQLVDEIIHGRFQPATPTFLNCGKKQ 180

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S G+
Sbjct: 181 RGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREAGAPIKHIENQSSGI 240

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 241 IPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVV 300

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISA 542
           IPD+  +   +N    LFSP +V +++            Y      A   + K    I+A
Sbjct: 301 IPDITFELAKRNEPMYLFSPYDVENVYGKPFGDISVTEKYYEMVDDARIRKTK----INA 356

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             L++ +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   ++  +      
Sbjct: 357 RELFQTLAEVQFESGYPYVMFEDTVNRANPI--AGRINMSNLCSEILQVNTPSDYEADLG 414

Query: 603 -------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654
                   S NL +       D     +T+ TA+R L  V ++ +  ++    ++N    
Sbjct: 415 YERIGEDISCNLGSLNIAKTMDSSDFGATVETAIRGLTAVSEMSDIRSVPSIAEANKQSH 474

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           AIGLG M     L   HI Y S E ++  +     +++HA+ AS  LA ER  A++ F+ 
Sbjct: 475 AIGLGQMNLHGYLAREHIHYGSEEGLDFTNLYFYTVTYHALRASNRLAIERGRAFAGFEA 534

Query: 714 SLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  GV+               + E+ D+  ++  ++  W ELK  V   G+ N N  A
Sbjct: 535 SDYASGVYFDKYTEQAWGPRTARVRELFDKAGIHVPTQEDWRELKASVMAHGLFNRNLQA 594

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824
           + PT +I+ I   + SI P    + ++     G       +L                  
Sbjct: 595 VPPTGSISYINHSTSSIHPVVSKIEIRKEGKLGRVYYPAPYL------------------ 636

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                         DD +  +  A+EI P  +I++ +   + +DQ  SL L+  +  + +
Sbjct: 637 -------------NDDNQDYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTR 683

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909
            ++     AW  G+KT YY+R R A 
Sbjct: 684 DINRAQIYAWRKGIKTLYYVRLRQAA 709


>gi|332527721|ref|ZP_08403762.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrivivax benzoatilyticus JA2]
 gi|332112119|gb|EGJ12095.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rubrivivax benzoatilyticus JA2]
          Length = 827

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 148/637 (23%), Positives = 258/637 (40%), Gaps = 74/637 (11%)

Query: 322 MRVAMGLALKETEKEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379
            RVA  LA  E E  + A E  +       F+ +   +  +GT     L +CF+  V D 
Sbjct: 39  ARVARALAAIEAEDARSAREAEFLWAMQRGFVPAGRIMSAAGTDIQATLINCFVQPVGDS 98

Query: 380 LYG-------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + G       I+ A+ E A   +  GG+G D++ +R  GA +  T+ ++ G + F++V +
Sbjct: 99  ITGYEGDKPGIYTAVTEAAETMRRGGGVGYDFSRIRPQGALVTQTHSRASGPVSFMRVFD 158

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H D+E F+  +     D+    + N +  + D  ++ 
Sbjct: 159 ASCETVESAGARRGAQMGVLRCDHPDIEAFIHAK-----DKGELRNFNISVGVTDALVQA 213

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +A + L                 E       RQ + G+  V+R + A  LW +++  
Sbjct: 214 VIDDAEFELVHAARPH----------EELVAAGARQREDGK-WVYRSVKARDLWDQIMRS 262

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF- 611
            ++   P + F D  N  +   +   + ++N C E  L     +   C LGS++L  H  
Sbjct: 263 TYDHAEPGVLFIDQMNRENNLHYCETIEATNPCAEEPLP----DYGCCCLGSVDLTRHVV 318

Query: 612 ----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                +  FD++  A+ +R  VR+LDNV+D     +E+ +      R +GLG +G  S+L
Sbjct: 319 GAFSDDAHFDFEGFAAVVRVGVRMLDNVLDATYWPLEQQRAEAAAKRRVGLGFLGLGSSL 378

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L I Y S E   +A +  E +   +  ASV+LA ERGA+   + + +           
Sbjct: 379 VMLGIRYDSDEGRALAAKIAETMRDASYLASVDLAVERGAFPKLEKTKY----------- 427

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPS 785
                      +  ++   + ++K ++  G+RNS+ +AIAPT TI+       S  I+P 
Sbjct: 428 ---------LKSGFAKRLPESIRKAIRKHGIRNSHLLAIAPTGTISLAFADNASNGIEPP 478

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y +                +   R          L  H G  G++ ++P       
Sbjct: 479 FSWTYNRKKR-----------EADGSHRIFEVADRAWRLFRHLG--GDVTKLPPQ----F 521

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA E+     +      Q ++D + S  + +  +   +    +Y  AW  GLK     R
Sbjct: 522 VTALEMSANDHMRMLEAVQPFLDTSISKTVNVPADYPYEDFQNLYLDAWKAGLKGLATYR 581

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             S      S               D +  T  +G P
Sbjct: 582 PNSVLGSVLSVGTPAAAPATPAAPRDEDPLTKHVGRP 618


>gi|300898655|ref|ZP_07116976.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
 gi|300357683|gb|EFJ73553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 198-1]
          Length = 701

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 175/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|293394771|ref|ZP_06639062.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera DSM 4582]
 gi|291422722|gb|EFE95960.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia
           odorifera DSM 4582]
          Length = 693

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 168/716 (23%), Positives = 293/716 (40%), Gaps = 85/716 (11%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +              +EEG     +       
Sbjct: 16  DRLAARHYFLQHVNQNTVFFHNLEEKLRY-------------LVEEGYYEPQVLAQYDFP 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA  + +
Sbjct: 63  FIKQLFKQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLAAGDRQ 122

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
               A +    + S  F  +TPT  NSG R   +L SCFL  + D++  I  A+     L
Sbjct: 123 ---LAQDLVEEMISGRFQPATPTFLNSGKRQRGELVSCFLLRIEDNMESIGRAVNSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLN 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +
Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVERV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YG  F     + + +    + ++ + +I+A   ++ +  + FE+G+P++ F+D  N    
Sbjct: 297 YGMPFSDISVSEKYREMVDDKRIRKSRINARDFFQVLAEIQFESGYPYMMFEDTVNR--E 354

Query: 573 QQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
               G ++ SNLC+EI               +   +   CNLGS+N+         D   
Sbjct: 355 NPIAGRINMSNLCSEILQVNRASKYHDDLGYAQVGKDISCNLGSLNIAKT-----MDAAD 409

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
               + TA+R L  V ++ +  ++    + N   RAIGLG M     L    I Y SPE 
Sbjct: 410 FGKAVNTAIRALTAVAEMSDIRSVPSIAEGNRASRAIGLGQMNLHGYLARERIYYGSPEG 469

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV------ 732
           ++  +     +++HAI AS +LA ER  A+  F+ S +  G +    +    +       
Sbjct: 470 IDFTNIYFYTVAYHAIRASNQLAIERGNAFDGFEHSAYASGDYFAKYVDRQWQPQTERVR 529

Query: 733 --RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
               E  +   ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 530 QLFAEAGVEIPTQEQWLALRQSVMLHGLYNQNLQAVPPTGSISYINNSTSSIHPIVSRIE 589

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G       ++ N+                                   +  A+
Sbjct: 590 IRKEGKIGRVYYPAPYMTND-------------------------------NLDYYQDAY 618

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 619 QIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKTIYYIR 674


>gi|116253996|ref|YP_769834.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258644|emb|CAK09748.1| putative ribonucleoside-diphosphate reductase alpha subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 707

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 180/708 (25%), Positives = 291/708 (41%), Gaps = 66/708 (9%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R  L+K R        +   + T      L  +      E   +  +L +   +F    
Sbjct: 23  GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYCEQEVLDQYSFNFVRDL 81

Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337
                 Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +    +
Sbjct: 82  FDQA--YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGDEALAR 139

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
             VE    + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K 
Sbjct: 140 DMVE---EIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 196

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   H
Sbjct: 197 GGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 256

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+  +YG 
Sbjct: 257 PDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVERVYGV 313

Query: 517 EFEIAYENYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            F       + +    + ++  +KI A   ++ +  + FE+G+P+I F+D  N  +P   
Sbjct: 314 PFTEISVTEKYREMADDARISKKKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI-- 371

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTA 628
            G +  SNLC+EI   S + E              S NL +       D      TI T+
Sbjct: 372 AGRISMSNLCSEILQVSEASEYHDDLSYKHLGKDISCNLGSLNIAAAMDSADFGKTIETS 431

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D+ +  ++   +K N    AIGLG M     L    I Y S E V+  +   
Sbjct: 432 IRALTAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYF 491

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAM 738
             +++HAI AS  LA ERG  +  F+ S +  G +       L E          +   +
Sbjct: 492 YTVTYHAIRASNLLAVERGTSFKGFENSKYASGEYFDKYTDRLWEPATEKVKALFETADI 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797
           +  ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + ++     G
Sbjct: 552 HIPTQEDWAALKKLVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIG 611

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  F+ N+                                   +  A+EI P  +I
Sbjct: 612 RVYYPAPFMTND-------------------------------NLDYYQDAYEIGPEKII 640

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 641 DTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKTIYYIR 688


>gi|309795134|ref|ZP_07689553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
 gi|308121105|gb|EFO58367.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 145-7]
          Length = 701

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|300916823|ref|ZP_07133527.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
 gi|300415889|gb|EFJ99199.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 115-1]
          Length = 701

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   + + E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|257056733|ref|YP_003134565.1| vitamin B12-dependent ribonucleotide reductase [Saccharomonospora
           viridis DSM 43017]
 gi|256586605|gb|ACU97738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Saccharomonospora viridis DSM 43017]
          Length = 955

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 131/650 (20%), Positives = 231/650 (35%), Gaps = 66/650 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 116 GYFAGAADAEIFEHELTWMLLHQVFSFNSPVWFNVGTSSKQQVSACFILSVDDTMESILN 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 176 WYKEEGLIFKGGSGAGLNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H DVEEF++ +       R                   +  + N +  +
Sbjct: 235 RAAKMVVLDVDHPDVEEFIETKAREEHKIRALRDAGFDMDLGGADISSVQYQNANNSVRV 294

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V     + L +                           R   ++  ++ A +L
Sbjct: 295 SDEFMQAVETGGDFGLRA---------------------------RTTGEIIERVDARSL 327

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +RKM    +E   P I + D  N        G + +SN C+E        + + CNL S+
Sbjct: 328 FRKMAQAAWECADPGIQYDDTINDWHTCPESGRITASNPCSEYMH----LDNSSCNLASL 383

Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NLL    ++  FD +     +   +  +D  I       E   ++    R +G+G     
Sbjct: 384 NLLKFLRDDGTFDAELFVKAVELVITAMDISICFADFPTEAIAETTRKFRQLGIGYANLG 443

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L      Y S     +A      ++  +   S ELA   G Y  +  +          
Sbjct: 444 ALLMATGHAYDSEGGRALAAAITSLMTAVSYRRSAELAGIVGPYEGYARNAEAHQRVMRK 503

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC----MAIAPTATIANICGV-S 779
                  VR     +   R    +   R   +GM N         +APT TI  +    +
Sbjct: 504 HAAANELVRTYHVNDAAIRAVATKEWNRGIELGMANGWRNSQASVLAPTGTIGFMMDCDT 563

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIER 836
             I+P +  + + K    G   +VN+ +   L+     +E +  I D     G + N   
Sbjct: 564 TGIEPDFSLVKFKKLVGGGSMKIVNNAVPRALRSLGYQEEQIEAIVDYISEHGHVVNAPG 623

Query: 837 IPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +  +  ++   A     I PM  +   +  Q ++  A S  + + E  + + ++ IY Q 
Sbjct: 624 LRPEHYEVFDCAVGERSIAPMGHVRMMAAVQPFLSGAISKTVNMPESATVEDVEEIYFQG 683

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           W +GLK     R         ST K    +  A P            +P 
Sbjct: 684 WKLGLKALAIYRDNCKVGQPLSTAKKEKSESRAEPEKVVEYRPVRKRLPK 733


>gi|256059455|ref|ZP_05449657.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
          Length = 738

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G  +     + +       DG     L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +    RV M    
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
                E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRANPI--DGRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A   
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAMRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568

Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628

Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++     G      +F+ N+                                 +
Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 658 YYLDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LR 904
           +R
Sbjct: 718 IR 719


>gi|300024266|ref|YP_003756877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526087|gb|ADJ24556.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 809

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 160/642 (24%), Positives = 259/642 (40%), Gaps = 87/642 (13%)

Query: 318 QAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
           +  F RVA+  A  E     +++K A  FY  ++ F F  +   L  +GT     L +CF
Sbjct: 35  EDTFRRVALAAASAEKGGKRQQQKWAGTFYEAMADFGFQPAGRILAGAGTDRNVTLFNCF 94

Query: 373 LT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +   + DDL  IF +++E A+  +  GG+G+D++ +R  GA +      + G + F+ V 
Sbjct: 95  VLGEIADDLSSIFESVKEAALTMQSGGGIGHDFSTLRPRGAPVKSIGADASGPVSFMDVW 154

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +     +   G+R+GA+ A L   H D+E F+  +     D +R  + N +  + D FM 
Sbjct: 155 DAMCRTIMSAGQRRGAMMATLRCDHPDIEAFIAAKA----DSQRLRNFNLSVLVTDAFMD 210

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            V ++A W L                                 KV++ I A ALW +++ 
Sbjct: 211 AVRRDAPWDLIFS-----------------------------GKVYKTIPARALWDQIMR 241

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             F+   P + F D  N  +  Q+   + ++N C E  L         C LGSINL    
Sbjct: 242 ATFDYAEPGVIFIDRINAANNLQYCETISATNPCGEQPLPPY----GACLLGSINLARLV 297

Query: 612 ANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                     D  KL + + TAVR LDNVIDI+ + + +  +     R IGLG+ G   A
Sbjct: 298 EEPFTATAHVDIAKLEARVATAVRFLDNVIDISRYPVPQQAQEARAKRRIGLGVTGLADA 357

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L  L +PY S  A E A   M  I   A  AS  LA E+GA+                  
Sbjct: 358 LIFLGLPYGSAAAREQAARWMAIIQNAAYRASAALAAEKGAFP----------------- 400

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
             L +    L     +RL  D +++ +   G+RN    +IAPT TI+ + G  S  I+P 
Sbjct: 401 --LYDANVVLTRPNITRLDDD-VREAIAANGLRNGCLTSIAPTGTISLLAGNVSSGIEPV 457

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +  ++ +                 L      +E  + D  +   +  +       L +  
Sbjct: 458 FDFVFRRRV---------------LSDGGGAEEETVEDFAHR--AFRDAFGDDAVLPEAF 500

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA  + P   +   +  Q ++D A S  +    + S +    IY +A+  GLK     R
Sbjct: 501 VTAETLTPSEHVAMQATLQPYVDSAISKTINCPEDISFESFRDIYIEAYDSGLKGCTTYR 560

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             + T    S     +G  +        +S    G+      
Sbjct: 561 PNAITGSVLSREAPANGDADKSGKLATPASGKPAGVSVPMED 602


>gi|238852994|ref|ZP_04643392.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 202-4]
 gi|238834389|gb|EEQ26628.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 202-4]
          Length = 722

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 177/750 (23%), Positives = 310/750 (41%), Gaps = 79/750 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++ T  + E  NY             +E      +   +    +   L  E   
Sbjct: 8   DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFVSL-EEKLA 58

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N +   +E
Sbjct: 59  YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQVLE 118

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+   R  +  SC+L 
Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGRKRRGEYVSCYLL 175

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q       + +  ISA   ++ +  + 
Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNILNNPCIKKTFISARKFFQTIAEVQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCN 412

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL   +  +++ L+ V    +       +K N  +RAIGLG 
Sbjct: 413 LGSLNIAAAMNSA----DKLGDLVSDSIQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 468

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA+  GA+  FK S +  G 
Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGD 528

Query: 721 FPIDSIGLL--------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I            E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 529 YFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +         V ++                           
Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L++++  + + L+  Y 
Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678

Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            A+     + YY+R R       E  T   
Sbjct: 679 YAFKKRCNSIYYVRIREKVLAGSENLTADE 708


>gi|297249810|ref|ZP_06933511.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|297173679|gb|EFH33043.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 5 str. B3196]
          Length = 722

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 175/716 (24%), Positives = 288/716 (40%), Gaps = 91/716 (12%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR    +   +     +   +K  +   +  Y            +  +L +   +F   
Sbjct: 48  AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 95

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336
                  Y R F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E
Sbjct: 96  LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD---E 150

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K
Sbjct: 151 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 210

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   
Sbjct: 211 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 270

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L
Sbjct: 271 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 330

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P 
Sbjct: 331 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 386

Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC             E        +   CNLGS+N+ A       D    
Sbjct: 387 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 439

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y S E V
Sbjct: 440 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 499

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A       + 
Sbjct: 500 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 558

Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 559 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 618

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G      +F+ N+                                 + +  A+
Sbjct: 619 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 647

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 648 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 703


>gi|317482332|ref|ZP_07941352.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916212|gb|EFV37614.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 731

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 163/739 (22%), Positives = 281/739 (38%), Gaps = 78/739 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255
             ++    +   +Y  + A   L       +  ++      Y     AT+ +      E 
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNIKRFASTAER 74

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               I        +        L      ++        +LG    Y  Y L     R+ 
Sbjct: 75  LDYLISNQYYNPDVFAQYSAEFLDRFYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
           + + F  R A          E +A E+ + + +  F  +TPT  N G     +  SCFL 
Sbjct: 135 L-EDFPQRCAAVALELAAGNEAQATEYVDEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D+
Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPIMKLLEDS 253

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   
Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           Q A   LFSP    D+  +YGK F              + ++ +  I A   +  +  + 
Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           FE+G+P+I F+D  N  +P             +  V   +   E    +       CNLG
Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+             LA T+ TA+R L +V +  + + +   +++N    AIGLG M 
Sbjct: 431 SLNIAKTMDG------GLAHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y S E ++  D     +++HA  AS  LA E    ++SF  S + +   
Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544

Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767
             +      + R  L                   +   W+ L+  +   G+ N N  A+ 
Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQAVP 604

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G      +++ N+                 
Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
           + G               +  A+EI    ++++ +   + +DQ  SL L+  +  + + L
Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712


>gi|227537624|ref|ZP_03967673.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242510|gb|EEI92525.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 701

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 171/706 (24%), Positives = 304/706 (43%), Gaps = 54/706 (7%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             L ++         +    + +     +    Y+ E       +E      +  + N +
Sbjct: 25  YSLHKDKEAVRAYFLEYVNKNTVFFYTLKEKIDYLIEQNYYINFYEWFTFEQMEEVFNFV 84

Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     ++     +  Y L  +     +E  +   + VA+ LA +E     +A+E+ 
Sbjct: 85  YAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVVAVALFLAREEG--VAKAIEYA 142

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +  +  +  +TPT  N+G +   +L SCFL  + D+L GI  A+     L+   GG+  
Sbjct: 143 EIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSIGGGVSF 202

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I G  G++ GV+P +K+  DT    NQ G+R GA   YL  +H D+EEF
Sbjct: 203 NISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLGQRPGAGAVYLNIFHSDIEEF 262

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K   D++ R   ++    +PD FM+   ++    L  P  V   +  Y  E +   
Sbjct: 263 LDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLIYPHTVMQEYGQYLDELD-MD 321

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE       IK  +KI+A  L  K+     E+G+P+I FK+  N       +G V  S
Sbjct: 322 LMYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIFFKENANREHALNGLGKVKFS 380

Query: 583 NLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           NLCTEI         N   +E  +    S NL +       D  ++  T++TA+R L  V
Sbjct: 381 NLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNVATVMDNKRIKETVKTAMRALTVV 440

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D+ +   +    K+N    ++GLG M     L    I Y S EA++ A+     +++++
Sbjct: 441 SDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAKSFIMYESDEALDFANTFFMMMNYYS 500

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWD 747
           + AS+E+A+E +  +   + S +  G +       D +    +V++    M+  +   W 
Sbjct: 501 LEASMEIAKERQRTFVGCEKSAYADGTYFDKYLSRDYMPKSDKVKELFEGMHIPTIEDWA 560

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK++VK  G+ ++  +AIAP  + + I   + S+ P    + V+            +L 
Sbjct: 561 QLKEQVKEHGVYHAYRLAIAPNQSTSYIMNATASVMPIVDIIEVREYGDSTTYYPMPYLT 620

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                     +A+++D M ++   S  Q+ I
Sbjct: 621 ND-------------------------------NYFYFKSAYDMDQMKVLRLISVIQRHI 649

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           DQ  S  L+ +   S + L   Y  A  +GLK+ YY R+R +T  E
Sbjct: 650 DQGVSTILHTNSKDSTRDLAKYYIYAHKLGLKSLYYTRTRKSTIDE 695


>gi|15842617|ref|NP_337654.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis CDC1551]
 gi|148824242|ref|YP_001288996.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis F11]
 gi|253797851|ref|YP_003030852.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 1435]
 gi|289553158|ref|ZP_06442368.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 605]
 gi|308374764|ref|ZP_07437295.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu006]
 gi|308379399|ref|ZP_07486134.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu010]
 gi|308406043|ref|ZP_07494896.2| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu012]
 gi|61230675|sp|P0A5W8|RIR1_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|61230680|sp|P0A5W9|RIR1_MYCBO RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|13882932|gb|AAK47468.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|148722769|gb|ABR07394.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis F11]
 gi|253319354|gb|ACT23957.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 1435]
 gi|289437790|gb|EFD20283.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 605]
 gi|308340742|gb|EFP29593.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu006]
 gi|308357116|gb|EFP45967.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu010]
 gi|308364704|gb|EFP53555.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu012]
 gi|323718283|gb|EGB27461.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CDC1551A]
 gi|328457628|gb|AEB03051.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis KZN 4207]
          Length = 725

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 280/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 71  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 687 VNKAQIYAWRKGIKTLYYIR 706


>gi|261323426|ref|ZP_05962623.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261299406|gb|EEY02903.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
          Length = 713

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR    +   +     +   +K  +   +  Y            +  +L +   +F   
Sbjct: 39  AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336
                  Y R F F  +LG    Y  Y L   +G R  E  +    RV M         E
Sbjct: 87  LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K
Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   
Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L
Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P 
Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377

Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC             E        +   CNLGS+N+ A       D    
Sbjct: 378 --DGRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y S E V
Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A       + 
Sbjct: 491 DFTNIYFYTVAYHAMRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549

Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G      +F+ N+                                 + +  A+
Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYLDAY 638

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694


>gi|191167117|ref|ZP_03028938.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
 gi|190902899|gb|EDV62627.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B7A]
          Length = 714

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|118617479|ref|YP_905811.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           ulcerans Agy99]
 gi|118569589|gb|ABL04340.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE
           [Mycobacterium ulcerans Agy99]
          Length = 693

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 170/716 (23%), Positives = 290/716 (40%), Gaps = 85/716 (11%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
             + AR    +   +     + + +K  +              I E    R + +     
Sbjct: 16  DVLAARQFFLQHVNQNTVFFHNQDEKLDY-------------LIRENYYEREVLDQYSRN 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L +    ++     +LG    Y  Y L   +G R  E  +   + VA+ LA  +  
Sbjct: 63  FVKALLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDAT 122

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
               A +  + +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L
Sbjct: 123 ---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL 
Sbjct: 180 SKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLH 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +
Sbjct: 240 AHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YG  F       +      + ++ +  I A   ++ +  + FE+G+P+I F+D  N  +P
Sbjct: 297 YGVPFADISVTEKYYEMVDDSRIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNRANP 356

Query: 573 QQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620
               G +  SNLC+EI               +   +   CNLGS+N+         D   
Sbjct: 357 I--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIART-----MDSPD 409

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            A TI  A+R L  V D  +  ++   ++ N+   AIGLG M     L   HI Y S E 
Sbjct: 410 FAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREHIFYGSEEG 469

Query: 680 VEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR----- 733
           V+  +     + +HA+ AS  +A ERG  +  F  S +  G F       + E +     
Sbjct: 470 VDFTNIYFYAVLYHALRASNRIAVERGTRFKGFDQSKYASGEFFDKYTERVWEPKTEKVR 529

Query: 734 ---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
               +  +   ++  W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 530 QLFADAGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVE 589

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G       ++ N                               +    +  A+
Sbjct: 590 IRKEGKIGRVYYPAPYMTN-------------------------------ENLDYYQDAY 618

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI    +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 619 EIGYEKIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674


>gi|218706175|ref|YP_002413694.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UMN026]
 gi|218433272|emb|CAR14172.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli UMN026]
          Length = 714

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 175/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|227888209|ref|ZP_04006014.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|300986154|ref|ZP_07177744.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|301050517|ref|ZP_07197393.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|227834849|gb|EEJ45315.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 83972]
 gi|300297773|gb|EFJ54158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 185-1]
 gi|300407908|gb|EFJ91446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 45-1]
 gi|307554651|gb|ADN47426.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli ABU 83972]
 gi|315290986|gb|EFU50351.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 153-1]
          Length = 701

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 176/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|293412033|ref|ZP_06654756.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|291468804|gb|EFF11295.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
          Length = 714

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 175/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFITTHVRPNSVAFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|296159883|ref|ZP_06842704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. Ch1-1]
 gi|295889866|gb|EFG69663.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. Ch1-1]
          Length = 858

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 149/632 (23%), Positives = 263/632 (41%), Gaps = 80/632 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              L +L ++Y         +     F RVA G+A  E    + +VE  F + L      
Sbjct: 26  QFSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPPALRESVEALFVDNLRHGALG 81

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 82  AGRIMSAAGTGIAATLINCFVQPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNF 141

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 142 SAIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 201

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM+ V ++  W L    E S               +
Sbjct: 202 AKHSKG----RWNNFNVSVGVTDDFMRAVEEDQPWQLVHRAEPSPA---------QRAAD 248

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             RQ + G + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N 
Sbjct: 249 DVRQREDG-LWVYSERPARAIWDRIMRSTYDIAEPGIVFISRMNEDNNLRAVETIRATNP 307

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL                 FD+D LA   RT VR LDNV
Sbjct: 308 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNV 363

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + +  + +   R IG+G  G    L +L + Y S E  + A    + +   A 
Sbjct: 364 LDVTLWPLPQQYEESRAKRRIGVGFTGLGDTLVMLGLRYDSQEGRDFAVGIAQLMRDEAY 423

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA+  F  + +                   L     +    +++K+ ++ 
Sbjct: 424 RASVELARERGAFPLFDAARY-------------------LETGTFASRLPEDIKQAIRR 464

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y +             ++ +  + 
Sbjct: 465 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGSRE 513

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E     L    G  G+++R+PD       +A E+     ++  +  Q ++D + S 
Sbjct: 514 SFDVEDYAYRLYRELG--GDVDRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISK 567

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + +  +   +  + +Y  AW  GLK     R
Sbjct: 568 TVNVPADYPFEAFESLYFDAWKNGLKGLATYR 599


>gi|190893562|ref|YP_001980104.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium etli
           CIAT 652]
 gi|190698841|gb|ACE92926.1| ribonucleoside-diphosphate reductase protein, alpha subunit
           [Rhizobium etli CIAT 652]
          Length = 693

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 184/713 (25%), Positives = 297/713 (41%), Gaps = 76/713 (10%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R  L+K R        +   + T      L  +      E   +  +L +   +F    
Sbjct: 9   GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDL 67

Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337
                 Y R F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E 
Sbjct: 68  FDQA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD---EA 122

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K 
Sbjct: 123 LARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 182

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   H
Sbjct: 183 GGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 242

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+  +YG 
Sbjct: 243 PDIMRFLDTKRENVDEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVERVYGV 299

Query: 517 EFEIAYENYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            F       + +   G+ ++  +KI A   ++ +  + FE+G+P+I F+D  N  +P   
Sbjct: 300 PFTEISVTEKYREMVGDARISKKKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI-- 357

Query: 576 VGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLAS 623
            G +  SNLC+EI   S + E               CNLGS+N+ A       D      
Sbjct: 358 DGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAA-----MDSADFGK 412

Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           TI T++R L  V D+ +  ++   +K N    AIGLG M     L    I Y S E V+ 
Sbjct: 413 TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDF 472

Query: 683 ADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------R 733
            +     +++HAI AS  LA ERG  +  F+ S +  G +         +          
Sbjct: 473 TNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYACGDYFDKYTEQEWKPATEKVQALF 532

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           D+  ++  ++  W ELK  V   G+ N N  A+ PT +I+ I   + SI P    + ++ 
Sbjct: 533 DKSGIHIPTQDDWAELKTAVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK 592

Query: 794 NMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G       F+ N+                                   +  A+EI 
Sbjct: 593 EGKIGRVYYPAPFMTND-------------------------------NLDYYQDAYEIG 621

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 622 AEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674


>gi|260869354|ref|YP_003235756.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|257765710|dbj|BAI37205.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323180096|gb|EFZ65648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1180]
          Length = 714

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L+SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELASCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|17989275|ref|NP_541908.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. 16M]
 gi|189023016|ref|YP_001932757.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus S19]
 gi|237817304|ref|ZP_04596296.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus str. 2308 A]
 gi|254691264|ref|ZP_05154518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|254695434|ref|ZP_05157262.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|254699052|ref|ZP_05160880.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254702721|ref|ZP_05164549.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|254706145|ref|ZP_05167973.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|254711556|ref|ZP_05173367.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|254712153|ref|ZP_05173964.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|254715224|ref|ZP_05177035.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|254732498|ref|ZP_05191076.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|256029808|ref|ZP_05443422.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|256043235|ref|ZP_05446172.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256111773|ref|ZP_05452744.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|256256450|ref|ZP_05461986.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|256262716|ref|ZP_05465248.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260544999|ref|ZP_05820820.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus NCTC 8038]
 gi|260564447|ref|ZP_05834932.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|260568372|ref|ZP_05838841.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis
           bv. 4 str. 40]
 gi|17985138|gb|AAL54172.1| ribonucleoside-diphosphate reductase alpha chain [Brucella
           melitensis bv. 1 str. 16M]
 gi|189021590|gb|ACD74311.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus S19]
 gi|237788117|gb|EEP62333.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus str. 2308 A]
 gi|260098270|gb|EEW82144.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           abortus NCTC 8038]
 gi|260152090|gb|EEW87183.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|260155037|gb|EEW90118.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis
           bv. 4 str. 40]
 gi|263092504|gb|EEZ16757.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326410494|gb|ADZ67558.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M28]
 gi|326553786|gb|ADZ88425.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M5-90]
          Length = 738

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G  +     + +       DG     L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +    RV M    
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
                E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A   
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568

Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628

Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++     G      +F+ N+                                 +
Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LR 904
           +R
Sbjct: 718 IR 719


>gi|254699598|ref|ZP_05161426.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 738

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G  +     + +       DG     L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +    RV M    
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
                E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A   
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568

Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628

Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++     G      +F+ N+                                 +
Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMAND-------------------------------NLE 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LR 904
           +R
Sbjct: 718 IR 719


>gi|293406172|ref|ZP_06650098.1| ribonucleotide reductase [Escherichia coli FVEC1412]
 gi|298381909|ref|ZP_06991506.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
 gi|291426178|gb|EFE99210.1| ribonucleotide reductase [Escherichia coli FVEC1412]
 gi|298277049|gb|EFI18565.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia
           coli FVEC1302]
          Length = 706

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 176/734 (23%), Positives = 299/734 (40%), Gaps = 69/734 (9%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +++  ++   + +   L +          R   +K  R+ +        +          
Sbjct: 1   MTQETMDYHALNAMLNLYDS-------AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ- 51

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            +     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 52  QQRLNWLVNEGYYDENVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDG 111

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
            R    + F  RV M         E  A +  + + S  F  +TPT  N G +   +L S
Sbjct: 112 KRY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 169

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 170 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 229

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 230 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 289

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549
               +NA   LFSP    D+  +YGK F +IA   +  +    E    + ++A   ++++
Sbjct: 290 HLAKENAQMALFSP---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRL 346

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NL 602
             + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           + 
Sbjct: 347 AEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHD 404

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +    +  D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M
Sbjct: 405 ISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQM 464

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
                L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G 
Sbjct: 465 NLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGE 524

Query: 721 FPIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +                 EL         +R  W +L+  V   G+ N N  A+ PT +I
Sbjct: 525 YFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSI 584

Query: 773 ANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++    +G       F+ N                       
Sbjct: 585 SYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN----------------------- 621

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
                   +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++    
Sbjct: 622 --------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQI 673

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 674 YAWRKGIKTLYYIR 687


>gi|21224150|ref|NP_629929.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           coelicolor A3(2)]
 gi|81816916|sp|O69981|NRDJ_STRCO RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|2995313|emb|CAA18341.1| ribonucleotide reductase [Streptomyces coelicolor A3(2)]
 gi|68449794|emb|CAJ01782.1| vitamin B12-dependent ribonucleotide reductase (class II)
           [Streptomyces coelicolor A3(2)]
          Length = 967

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 121/632 (19%), Positives = 226/632 (35%), Gaps = 32/632 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E+F+  +    +  R   D      +    +  V           ++       
Sbjct: 243 VDHPDIEDFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVQ 302

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G +F            R   +V  ++ A AL+RKM    +    P I + D  N     
Sbjct: 303 DGGKF--------GLTSRMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTINAWHTC 354

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+         N  FD ++ +  +   
Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFDAERFSKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  +   S ELA   G Y  +  +               A+      ++      +  
Sbjct: 471 LMTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RNS    IAPT TI       +  ++P    + + K    G   +V
Sbjct: 531 AWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +     +G++ +   +  +  ++   A     I  M  +
Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKPEHYEVFDCAMGERSISAMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R         S  
Sbjct: 651 RMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 710

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                      +T+   +     +        
Sbjct: 711 TKTVKDTEKAEITEKTEAAIRETVEKVVEYRP 742


>gi|326381480|ref|ZP_08203174.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199727|gb|EGD56907.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 705

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 173/723 (23%), Positives = 283/723 (39%), Gaps = 87/723 (12%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  AR    +   +     +   +K  +              I+E      +       
Sbjct: 16  DREAARQYFLQHVNQNTVFFHDLDEKLDY-------------LIKENYYEPEVLAKYDRE 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +    RV M        
Sbjct: 63  FVKLLFGHAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALTLADG 119

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
               A    + +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L
Sbjct: 120 DTALARHLVDEIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + VR  GA I     +S GVIP +K+  D+    NQ G R+GA   YL 
Sbjct: 180 SKRGGGVALLLSNVREHGAPIKRIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLH 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +
Sbjct: 240 AHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNDDMYLFSP---YDVERV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YGK F     + E  A   + ++ + KI A   ++ +  + FE+G+P+I F+D  N    
Sbjct: 297 YGKPFADVNVSDEYHAMVEDRRIRKSKIKAREFFQTLAELQFESGYPYIMFEDTVNR--S 354

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTI 625
               G V  SNLC+EI   S+  E              S NL +       D      +I
Sbjct: 355 NPIDGKVTHSNLCSEILQVSTPSEFNEDLTYSQVGKDISCNLGSMNIAKTMDSPDFGQSI 414

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V D  +  ++   K++N    AIGLG M     L    I Y S E ++  +
Sbjct: 415 ETAIRGLTAVADQTSIESVPSIKRANDEGHAIGLGQMNLHGYLARERIFYGSEEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV----------- 732
                + FHAI AS ++A+ER   ++ F+ S +  G F       + E            
Sbjct: 475 MYFYTVLFHAIRASNKIAKERGTTFAGFEKSKYASGEFFDKYTDQVWEPATEKVREIFAN 534

Query: 733 ---------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                      +  ++  ++  W ELK  V+  G+ N N  A+ PT +I+ I   + SI 
Sbjct: 535 AGPGESGQLFSDNGIHIPTQDDWRELKASVQKYGIYNQNLQAVPPTGSISYINHSTSSIH 594

Query: 784 PSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + ++     G       +L N+                                 
Sbjct: 595 PVASKIEIRKEGKIGRVYYPAPYLTND-------------------------------NL 623

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTY 901
           + +  A+EI    +I++ +   + +DQ  SL L+  +  S + ++     AW  G+KT Y
Sbjct: 624 EYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTASTRDVNKAQIYAWRKGIKTLY 683

Query: 902 YLR 904
           Y+R
Sbjct: 684 YIR 686


>gi|255324327|ref|ZP_05365448.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
 gi|255298657|gb|EET77953.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
          Length = 720

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 166/690 (24%), Positives = 291/690 (42%), Gaps = 67/690 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301
             H     +Y       I+  +  +     +++ +D  ++    K    + F +      
Sbjct: 51  LQHVNQNTVYFHDLEEKIDYLINNKYYDPQVIEQYDFSFIKELFKRAYSYKFRFKSFLGA 110

Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Y  Y        +G R  E  +    RV+M            A    + + +  F  +TP
Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDAGLAEHLVDEIMTGRFQPATP 167

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G     +L SCFL  + D++  I  ++     L+K  GG+    + +R  GA I 
Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIK 227

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R
Sbjct: 228 HIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIR 287

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533
              ++    +PD+  +   +N    LFSP    D+  +YGK F      E+YE   +   
Sbjct: 288 IKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPR 344

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           I+  +KI+A   ++ +  + FE+G+P+I F+D  N  +P +    ++ SNLC+EI   +S
Sbjct: 345 IRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRANPVKTSW-INMSNLCSEILQVNS 402

Query: 594 SEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
           + E              S NL +       D    A+T+ TA+R L  V D  +  ++  
Sbjct: 403 ASEFNADLTYEELGSDISCNLGSLNIAMTMDSPDFANTVETAIRGLTAVADKTSIDSVPS 462

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++ N    AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+ER
Sbjct: 463 VRRGNDESHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAVLYAALRASNKIARER 522

Query: 706 GAY-SSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           G Y +    S +  G F               + E+ D  +++  S   W++LK+ V   
Sbjct: 523 GEYFTELPQSEYASGEFFDRYDPEEFKPKTKKVQELFDASSIHTPSAQDWEDLKQDVAKY 582

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815
           G+ N N  A+ PT +I+ I   + SI P    + ++     G        + N+      
Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                      +    ++EI    ++++ +   K++DQ  SL L
Sbjct: 637 -------------------------NLEYFKDSYEIGYEKIVDTYAVATKYVDQGLSLTL 671

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  +  + ++++     AW  G+KT YY+R
Sbjct: 672 FFKDTATTREVNRAQIYAWRKGIKTLYYIR 701


>gi|270265354|ref|ZP_06193615.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
 gi|270040758|gb|EFA13861.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia
           odorifera 4Rx13]
          Length = 693

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 165/711 (23%), Positives = 290/711 (40%), Gaps = 75/711 (10%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +              +EEG   + +       
Sbjct: 16  DRLAARHYFLQHVNQNTVFFHNLEEKLRY-------------LVEEGYYEQAVLAQYDFS 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA  +  
Sbjct: 63  CIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAGD-- 120

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
             + A +    + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L
Sbjct: 121 -TRLAQDLVEEMISGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    T +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 180 SKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLN 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +
Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVEQV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YG  F     + + +    + ++ + +I+A   ++ +  + FE+G+P++ F+D  N    
Sbjct: 297 YGVPFSEISVSEKYREMVDDKRIRKSRINAREFFQVLAEIQFESGYPYMMFEDTVNR--E 354

Query: 573 QQHVGVVHSSNLCTEITLN----SSSEETAVCNLG---SINLLAHFANNQFDYDKLASTI 625
               G ++ SNLC+EI       +  ++ +   +G   S NL +       D       +
Sbjct: 355 NPIAGRINMSNLCSEILQVNRASTYHDDLSYDRVGKDISCNLGSLNIAKTMDAPDFGKAV 414

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V D+ +  ++    + N +  AIGLG M     L    I Y S E ++  +
Sbjct: 415 DTAIRALTAVADMSDIRSVPSIAEGNRSSHAIGLGQMNLHGYLARERIFYGSEEGIDFTN 474

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735
                +++HAI AS  LA ER  A+  F+ S +  G +           R         +
Sbjct: 475 IYFYTVAYHAIRASNRLAIERGSAFEGFEHSTYASGDYFTKYTEREWLPRTERVRTLFAD 534

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +    R  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 535 ANIAIPGREEWLALRQSVMMHGLYNQNLQAVPPTGSISYINNSTSSIHPIVSRIEIRKEG 594

Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ N+                                 + +  A++I P 
Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYDIGPE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 624 KIIDTYAAAGQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKTIYYIR 674


>gi|323173042|gb|EFZ58673.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli LT-68]
          Length = 714

 Score =  312 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|293389920|ref|ZP_06634254.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950454|gb|EFE00573.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 561

 Score =  312 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 159/587 (27%), Positives = 249/587 (42%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  ++  S+P   N G       SCF + + D +  I   + E  +++K
Sbjct: 57  EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G++I   NGKS G   F K+   T   ++QG  RKG    Y++  
Sbjct: 117 LGGGTSGYFGDIRPRGSNI-TNNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+LD+      +      M     +   +++ +     +                
Sbjct: 176 HGDIEEWLDIHT----EGNPIQLMYYGVCVSHEWLEAMKAGDPYK--------------- 216

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        +W K+L    ETG P++ FKD  N   P  +
Sbjct: 217 ---------------------------RQIWAKLLQRKTETGIPYLFFKDNANAGRPDVY 249

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                ++H+SNLC+EI L SS +E+ VC L S+NLL       FD  K           L
Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303

Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D V+        N   +EKA K    HRA+GLG++G+ S L   +I + S EA++  +  
Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + +    + AS ELA   G     KG                                 
Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                     G RN+  M++APT + + I G VS SI+P   N YVK          N F
Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   LKQ+ L  E +   +  +DGS+ ++  + +  K++  T  EI  + +I+ A++RQK
Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QS+N+ +      + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548


>gi|254720035|ref|ZP_05181846.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|306839413|ref|ZP_07472227.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           NF 2653]
 gi|306405536|gb|EFM61801.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp.
           NF 2653]
          Length = 738

 Score =  312 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G  +     + +       DG     L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +    RV M    
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
                E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQILAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRANPI--EGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A   
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568

Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628

Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++     G      +F+ N+                                 +
Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LR 904
           +R
Sbjct: 718 IR 719


>gi|23500071|ref|NP_699511.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           1330]
 gi|62317764|ref|YP_223617.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 1 str. 9-941]
 gi|83269750|ref|YP_419041.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis biovar Abortus 2308]
 gi|148558300|ref|YP_001257347.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis
           ATCC 25840]
 gi|161620389|ref|YP_001594275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis
           ATCC 23365]
 gi|225686157|ref|YP_002734129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis ATCC 23457]
 gi|256015099|ref|YP_003105108.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|260756871|ref|ZP_05869219.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260760302|ref|ZP_05872650.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260763542|ref|ZP_05875874.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260882685|ref|ZP_05894299.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|261215814|ref|ZP_05930095.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|261216943|ref|ZP_05931224.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261313588|ref|ZP_05952785.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261319173|ref|ZP_05958370.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|261319813|ref|ZP_05959010.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|261753310|ref|ZP_05997019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|265986824|ref|ZP_06099381.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|265989660|ref|ZP_06102217.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265993238|ref|ZP_06105795.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|23463662|gb|AAN33516.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis
           1330]
 gi|62197957|gb|AAX76256.1| NrdE, ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940024|emb|CAJ13055.1| Ribonucleotide reductase large subunit:Prenyl group binding site
           (CAAX box) [Brucella melitensis biovar Abortus 2308]
 gi|148369585|gb|ABQ62457.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ovis
           ATCC 25840]
 gi|161337200|gb|ABX63504.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella canis
           ATCC 23365]
 gi|225642262|gb|ACO02175.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella
           melitensis ATCC 23457]
 gi|255997759|gb|ACU49446.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|260670620|gb|EEX57560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260673963|gb|EEX60784.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260676979|gb|EEX63800.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260872213|gb|EEX79282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|260917421|gb|EEX84282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|260922032|gb|EEX88600.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261292503|gb|EEX95999.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|261298396|gb|EEY01893.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|261302614|gb|EEY06111.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261743063|gb|EEY30989.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|262764108|gb|EEZ10140.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|263000329|gb|EEZ13019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|264659021|gb|EEZ29282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
          Length = 713

 Score =  312 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR    +   +     +   +K  +   +  Y            +  +L +   +F   
Sbjct: 39  AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336
                  Y R F F  +LG    Y  Y L   +G R  E  +    RV M         E
Sbjct: 87  LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K
Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   
Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L
Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P 
Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377

Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC             E        +   CNLGS+N+ A       D    
Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y S E V
Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A       + 
Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549

Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G      +F+ N+                                 + +  A+
Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694


>gi|261750055|ref|ZP_05993764.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261739808|gb|EEY27734.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 713

 Score =  312 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR    +   +     +   +K  +   +  Y            +  +L +   +F   
Sbjct: 39  AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336
                  Y R F F  +LG    Y  Y L   +G R  E  +    RV M         E
Sbjct: 87  LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K
Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   
Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L
Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P 
Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377

Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC             E        +   CNLGS+N+ A       D    
Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y S E V
Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A       + 
Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549

Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G      +F+ N+                                 + +  A+
Sbjct: 610 IRKEGKIGRVYYPAAFMAND-------------------------------NLEYYQDAY 638

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694


>gi|60202516|gb|AAX14644.1| ribonucleotide reductase large catalytic subunit mutant
           [Corynebacterium stationis]
          Length = 720

 Score =  312 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 164/690 (23%), Positives = 277/690 (40%), Gaps = 67/690 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301
             H     +Y       IE  V+ +     +++ +D  ++ +  K    F F +      
Sbjct: 51  LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKSFLGA 110

Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Y  Y        +G R  E  +    RV+M            A    + + S  F  +TP
Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQPATP 167

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G     +L SCFL  + D++  I  A+  +  L+K  GG+    + +R  GA I 
Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIK 227

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R
Sbjct: 228 HIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIR 287

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGE 533
              ++    IPD+      +N    LFSP +V  ++            Y          +
Sbjct: 288 IKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVSDHYAEMVEDPRITK 347

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
               +KI+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S
Sbjct: 348 ----KKINARHFFQTVAELQFESGYPYIMFEDTVNNANP-VKTGRINMSNLCSEILQVNS 402

Query: 594 SEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
                       + +  S NL +       D+     T+  A+R L  V D     ++  
Sbjct: 403 PSSFNDDLSYEEMGSDISCNLGSMNIALAMDFPDFGGTVEAAIRGLTAVADKTAIDSVPS 462

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +  N    AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+ER
Sbjct: 463 IRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYAALRASNKIAKER 522

Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
              +S FK S +  GVF  +            + E+     ++  S   W +LK  V   
Sbjct: 523 GETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAEDWADLKAEVMEH 582

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815
           G+ N N  A+ PT +I+ I   + SI P    + ++     G        + N+      
Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                           A+E+    +I++ +   K++DQ  SL L
Sbjct: 637 -------------------------NLDYFQDAYEVGHEKIIDTYAVATKYVDQGLSLTL 671

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  +  + + ++     AW  G+KT YY+R
Sbjct: 672 FFKDTATTRDINRAQIYAWRKGIKTLYYIR 701


>gi|26249070|ref|NP_755110.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli CFT073]
 gi|26109477|gb|AAN81680.1|AE016765_82 Ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli CFT073]
          Length = 714

 Score =  312 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 176/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|315445212|ref|YP_004078091.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. Spyr1]
 gi|315263515|gb|ADU00257.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium sp. Spyr1]
          Length = 722

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 164/680 (24%), Positives = 283/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     IE+    R + +      +  L +    ++     ++G    Y  Y L   +G
Sbjct: 68  DEKLDYLIEKNYYEREVLDQYSRNFVKGLLDRAYAKKFRFPTFVGAFKYYTSYTLKTFDG 127

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A +  + +    F  +TPT  NSG +   +  
Sbjct: 128 KRYLERFEDRVVMVALTLASGD---TVLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEPV 184

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 185 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 244

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDIT 304

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 305 FELAKKNEDMYLFSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 361

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI               +   +
Sbjct: 362 LAELQFESGYPYIMYEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 419

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D  +  ++   ++ N++  A
Sbjct: 420 DISCNLGSLNIAKA-----MDSPDFAQTIEVSIRALTAVSDQTHIWSVPSIEQGNNSSHA 474

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 475 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYCVLYHALRASNRIAIERGTAFGGFEKS 534

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +    +  W +LK  V+  G+ N N  A+
Sbjct: 535 KYKSGEFFDKYTDQVWEPKTEKVRGLFADAGIRIPDQEDWKQLKASVQEHGIYNQNLQAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N                 
Sbjct: 595 PPTGSISYINHSTSSIHPIASKVEIRKEGKIGRVYYPAPYMTN----------------- 637

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +  + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 638 --------------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRD 683

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 684 VNKAQIYAWRKGIKTLYYIR 703


>gi|213693324|ref|YP_002323910.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524785|gb|ACJ53532.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459506|dbj|BAJ70127.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 731

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 161/739 (21%), Positives = 279/739 (37%), Gaps = 78/739 (10%)

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---- 258
             ++    +   +Y  + A   L     ++     K  ++           + F      
Sbjct: 15  ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVAANSKQFASTAER 74

Query: 259 ---YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               I        +        L      ++        +LG    Y  Y L     R+ 
Sbjct: 75  LDYLISNQYYNPDVFAQYSAEFLDRFYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
           + + F  R A          E +A E+ + + +  F  +TPT  N G     +  SCFL 
Sbjct: 135 L-EDFPQRCAAVALELAAGNEAQATEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I   +     L+K  GG+    + +R LGA I     +S GVIP +K+  D+
Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKMLEDS 253

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   
Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           Q A   LFSP    D+  +YGK F     +        + ++ +  I A   +  +  + 
Sbjct: 314 QKAQMALFSP---YDVERVYGKSFADISVSEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370

Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           FE+G+P+I F+D  N  +P             +  V   +   E    +       CNLG
Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662
           S+N+             LA T+ TA+R L +V +  + + +   +++N    AIGLG M 
Sbjct: 431 SLNIAKAMDG------GLAHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y S E ++  D     +++HA  AS  LA E   A+ SF  S + +   
Sbjct: 485 LHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGQAFKSFATSDYAKPAG 544

Query: 722 PIDSIGLLAEVRDELAMNRT--------------SRLPWDELKKRVKTIGMRNSNCMAIA 767
             +      + R  L                   +   W+ L+  +   G+ N N  A+ 
Sbjct: 545 QGNYFDKYTDGRRSLEPRTAKIRELFAKYGIAIPTAANWEALRDAILKDGIYNQNLQAVP 604

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G      +++ N+                 
Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           + +  A+EI    ++++ +   + +DQ  SL L+  +  + + L
Sbjct: 648 --------------NLEYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712


>gi|297156720|gb|ADI06432.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           bingchenggensis BCW-1]
          Length = 964

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 120/628 (19%), Positives = 231/628 (36%), Gaps = 32/628 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E    L    F  ++P  FN GT +  Q+S+CF+ +V D +  I  
Sbjct: 115 GYFASPADAEIFDHELTYALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILD 174

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  M+ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 175 WYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 233

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H DVE F++ +    +  R   D      +    +  V           
Sbjct: 234 RAAKMVVLDVDHPDVEAFIEAKVKEEEKIRALRDAGFDMDLGGEDITSVQYQNANNSVRV 293

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           ++        G +F +              ++  ++ A +L+RKM    +    P I + 
Sbjct: 294 NDTFMKAVESGSKFGLRARMS--------GEILEEVDAKSLFRKMAEAAWACADPGIQYD 345

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYD 619
           D  N        G + +SN C+E        + + CNL S+NL+         + +FD +
Sbjct: 346 DTINHWHTSPETGRITASNPCSEYMH----LDNSSCNLASLNLMKFLDDDEAGHQRFDAE 401

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           + A  +   +  +D  I       +K  ++    R +G+G     + L      Y S   
Sbjct: 402 RFAKVVELVITAMDISICFADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGG 461

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--AEVRDELA 737
             +A      ++  +   S ELA   G Y  +  +                 A+  D+L 
Sbjct: 462 RALAGAITSLMTGTSYRRSAELAAVVGPYEGYARNADAHKRVMKQHSDANGAAKRMDDLD 521

Query: 738 --MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKS 793
             +   +   W ++ +  +  G RN+    +APT TI  +    +  I+P    + + K 
Sbjct: 522 TPVWAAATEAWQDVIRLGEKNGFRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKL 581

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF-- 849
              G   +VN+ +   LK+     E + + +      G++ +   +  +  ++   A   
Sbjct: 582 VGGGSMQIVNNTVPKALKRLGYQPEQVEAIVAHIAEHGNVIDAPGLKSEHYEVFDCAMGD 641

Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + + E  + ++++ IY + W +GLK     R   
Sbjct: 642 RSISPMGHVRMMAAAQPFLSGAISKTVNMPESATVEEIEEIYFEGWKLGLKALAIYRDNC 701

Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSST 935
                 S  K  +               
Sbjct: 702 KVGQPLSAKKKEEKPAEQAEPEAEKVIE 729


>gi|256157978|ref|ZP_05455896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|256253063|ref|ZP_05458599.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
          Length = 738

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G  +     + +       DG     L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNKNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +    RV M    
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
                E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A   
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568

Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628

Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++     G      +F+ N+                                 +
Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LR 904
           +R
Sbjct: 718 IR 719


>gi|163844497|ref|YP_001622152.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           ATCC 23445]
 gi|163675220|gb|ABY39330.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis
           ATCC 23445]
          Length = 713

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 175/716 (24%), Positives = 287/716 (40%), Gaps = 91/716 (12%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR    +   +     +   +K  +   +  Y            +  +L +   +F   
Sbjct: 39  AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336
                  Y R F F  +LG    Y  Y L   +G R  E  +    RV M         E
Sbjct: 87  LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K
Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   
Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQVGARQGAGAVYLHAH 261

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L
Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P 
Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377

Query: 574 QHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC+EI                   +   CNLGS+N+ A       D    
Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHQDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y S E V
Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A       + 
Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549

Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G      +F+ N+                                 + +  A+
Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694


>gi|294853319|ref|ZP_06793991.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
 gi|294818974|gb|EFG35974.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
          Length = 738

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 182/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%)

Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214
           ++  +     EA  G    + + V     K      S   L+   + +   L +++    
Sbjct: 5   DTSLIREREAEAVQG----APESVAMTAGK---PAKSSDGLDYHALNAMLNLYDEDGKIQ 57

Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273
            +  +  AR    +   +     +   +K  +   +  Y            +  +L +  
Sbjct: 58  LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105

Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330
            +F          Y R F F  +LG    Y  Y L   +G R  E  +    RV M    
Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389
                E+ A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++  
Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              L+K  GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA  
Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
            YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  
Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340

Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           ++   L        Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  
Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396

Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC             E        +   CNLGS+N+ A      
Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D      TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y
Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S E V+  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A   
Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568

Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
               + R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628

Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++     G      +F+ N+                                 +
Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
            +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717

Query: 903 LR 904
           +R
Sbjct: 718 IR 719


>gi|261868067|ref|YP_003255989.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413399|gb|ACX82770.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 561

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 159/587 (27%), Positives = 249/587 (42%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  A +FY+ ++  ++  S+P   N G       SCF + + D +  I   + E  +++K
Sbjct: 57  EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  G++I   NGKS G   F K+   T   ++QG  RKG    Y++  
Sbjct: 117 LGGGTSGYFGDIRPRGSNI-TNNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+LD+      +      M     +   +++ +     +                
Sbjct: 176 HGDIEEWLDIHT----EGNPIQLMYYGVCVSHEWLEAMKAGDPYK--------------- 216

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                                        +W K+L    ETG P++ FKD  N   P  +
Sbjct: 217 ---------------------------RQIWAKLLQRKTETGIPYLFFKDNANADRPDVY 249

Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                ++H+SNLC+EI L SS +E+ VC L S+NLL       FD  K           L
Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303

Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D V+        N   +EKA K    HRA+GLG++G+ S L   +I + S EA++  +  
Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + +    + AS ELA   G     KG                                 
Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                     G RN+  M++APT + + I G VS SI+P   N YVK          N F
Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   LKQ+ L  E +   +  +DGS+ ++  + +  K++  T  EI  + +I+ A++RQK
Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QS+N+ +      + L+ +Y  A  +GLK+ YY  S SA  V
Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548


>gi|9629746|ref|NP_045238.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 4]
 gi|2605964|gb|AAC59536.1| 21 [Equid herpesvirus 4]
          Length = 789

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 169/685 (24%), Positives = 283/685 (41%), Gaps = 65/685 (9%)

Query: 272 SMMDFDLVYLANDLKYE-RDF-AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
             +DF    L +    E RD  +          + Y   + G R+E    FF+R+A    
Sbjct: 108 EHIDFVQKTLNSFETSEYRDLCSLGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTAT 167

Query: 330 LKETEK--------------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
               E+                    F+  L+    + +TP +   G     ++SC+L  
Sbjct: 168 HYTMEQPAMARVLVSGEVGWTYIFRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLN 227

Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D    I   ++E   +    GG+G               T G S+GV+  LK+ + 
Sbjct: 228 PRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNT-----PPTEGCSRGVMALLKLLDS 282

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKR 492
             +A+N  G+R   VC Y E WH D+   L++R     D+  R  ++    W PDLF  R
Sbjct: 283 MTMAINSDGERPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDR 342

Query: 493 VT-----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
                  ++        D  S L  +YG +F   YE  ER     +      I    +  
Sbjct: 343 YQRYVDGESGIMWTLFDDTASHLCHMYGNDFTREYERLERCGFGID-----AIPIQDMAF 397

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP--QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
            ++     TG P++ FKD CN       +  G +  SNLCTEI  ++   +  VCNL SI
Sbjct: 398 IIVRSAVMTGSPFLMFKDACNRHYHFDMRKRGAIMGSNLCTEIIQHADETQNGVCNLASI 457

Query: 606 NLLAHFA--------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL    A           FD+  L     TA   ++ ++  + +   K++K    +R++G
Sbjct: 458 NLPKCLALPPPNIAGVPYFDFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLG 517

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLW 716
           LG+ G  +   +L +  ASPEA ++  +  E +  +++ AS  L +     +  F+ S +
Sbjct: 518 LGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKY 577

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G  P D             +  T+R  W  L+  +K  G+ NS  +A  PT + + + 
Sbjct: 578 SRGELPFD---------AYPNVTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVT 628

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGN 833
             S+   P Y NL+ K   +G+    N  L+  ++    ++      +S L+    S+  
Sbjct: 629 ESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVG 688

Query: 834 IER-IP-DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLD 886
               +P         TAFE D   LI   + R  ++DQ+QS++L++ EP        ++ 
Sbjct: 689 AFGDLPVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIM 748

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATS 910
            +   A+  GLKT  YY + + AT+
Sbjct: 749 NLLVHAYKRGLKTGMYYCKIKKATN 773


>gi|1710389|sp|P50642|RIR1_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|515832|emb|CAA53100.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4]
          Length = 789

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 169/685 (24%), Positives = 283/685 (41%), Gaps = 65/685 (9%)

Query: 272 SMMDFDLVYLANDLKYE-RDF-AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
             +DF    L +    E RD  +          + Y   + G R+E    FF+R+A    
Sbjct: 108 EHIDFVQKTLNSFETSEYRDLCSLGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTAT 167

Query: 330 LKETEK--------------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
               E+                    F+  L+    + +TP +   G     ++SC+L  
Sbjct: 168 HYTMEQPAMARVLVSGEVGWTYIFRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLN 227

Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D    I   ++E   +    GG+G               T G S+GV+  LK+ + 
Sbjct: 228 PRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNT-----PPTEGCSRGVMALLKLLDS 282

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKR 492
             +A+N  G+R   VC Y E WH D+   L++R     D+  R  ++    W PDLF  R
Sbjct: 283 MTMAINSDGERPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDR 342

Query: 493 VT-----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
                  ++        D  S L  +YG +F   YE  ER     +      I    +  
Sbjct: 343 YQRYVDGESGIMWTLFDDTASHLCHMYGNDFTREYERLERCGFGID-----AIPIQDMAF 397

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP--QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
            ++     TG P++ FKD CN       +  G +  SNLCTEI  ++   +  VCNL SI
Sbjct: 398 IIVRSAVMTGSPFLMFKDACNRHYHFDMRQRGAIMGSNLCTEIIQHADETQNGVCNLASI 457

Query: 606 NLLAHFA--------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           NL    A           FD+  L     TA   ++ ++  + +   K++K    +R++G
Sbjct: 458 NLPKCLALPPPNIAGVPYFDFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLG 517

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLW 716
           LG+ G  +   +L +  ASPEA ++  +  E +  +++ AS  L +     +  F+ S +
Sbjct: 518 LGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKY 577

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +G  P D             +  T+R  W  L+  +K  G+ NS  +A  PT + + + 
Sbjct: 578 SRGELPFD---------AYPNVTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVT 628

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGN 833
             S+   P Y NL+ K   +G+    N  L+  ++    ++      +S L+    S+  
Sbjct: 629 ESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVG 688

Query: 834 IER-IP-DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLD 886
               +P         TAFE D   LI   + R  ++DQ+QS++L++ EP        ++ 
Sbjct: 689 AFGDLPVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIM 748

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATS 910
            +   A+  GLKT  YY + + AT+
Sbjct: 749 NLLVHAYKRGLKTGMYYCKIKKATN 773


>gi|317506845|ref|ZP_07964617.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
 gi|316254773|gb|EFV14071.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
          Length = 728

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 166/679 (24%), Positives = 280/679 (41%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +E       +        +  L +    ++     +LG    Y  Y L   +G 
Sbjct: 75  EKLDYLVENEYYEPEVLGRYSREFVKGLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGK 134

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +   + VA+ LA      E+ A +    +    F  +TPT  N G +   +  S
Sbjct: 135 RYLERFEDRVVMVALALA---DGDEELASQLVEEIIEGRFQPATPTFLNCGKKQRGEPVS 191

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+
Sbjct: 192 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVMKL 251

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 252 LEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 311

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKM 549
           +   +N    LFSP    D+  +YG  F       +  +    E    +KI+A   ++ +
Sbjct: 312 ELAKRNDDMYLFSP---YDVERVYGVPFAEVSVTEKYFEMVDDERIRKKKINAREFFQTI 368

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I ++D  N  +P    G +  SNLC+EI               S   + 
Sbjct: 369 AELQFESGYPYIMYEDTVNRANPI--DGRITHSNLCSEILQVSTASTFNADLSYSHIGKD 426

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      T+ T++R L +V D     ++    + N    AI
Sbjct: 427 ISCNLGSLNIAKT-----MDSPDFGRTVETSIRALTSVSDQTRIDSVPSIAEGNEQSHAI 481

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y S E ++  +     + +HA+SAS ++A ER  A++ F+ S 
Sbjct: 482 GLGQMNLHGYLARERIHYGSEEGIDFTNIYFYTVLYHALSASNKIAIERGRAFTGFERSK 541

Query: 716 WDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F    +    E +        +   +   +   W  LK+ V+  G+ N N  A+ 
Sbjct: 542 YASGEFFEKYLTQSWEPKTERVRELFERAGVAIPTVADWQRLKESVQAHGIYNQNLQAVP 601

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       +L N+                 
Sbjct: 602 PTGSISYINHSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLAND----------------- 644

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           + +  A+EI    +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 645 --------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDI 690

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 691 NKAQIYAWRKGIKTLYYIR 709


>gi|300771014|ref|ZP_07080891.1| ribonucleotide-diphosphate reductase subunit alpha
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762287|gb|EFK59106.1| ribonucleotide-diphosphate reductase subunit alpha
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 701

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 171/706 (24%), Positives = 304/706 (43%), Gaps = 54/706 (7%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             L ++         +    + +     +    Y+ E       +E      +  + N +
Sbjct: 25  YSLHKDKEAVRAYFLEYVNKNTVFFYTLKEKIDYLIEQNYYINFYEWFTFEQMEEVFNFV 84

Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     ++     +  Y L  +     +E  +   + VA+ LA +E     +A+E+ 
Sbjct: 85  YAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVVAVALFLAREEG--VAKAIEYA 142

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +  +  +  +TPT  N+G +   +L SCFL  + D+L GI  A+     L+   GG+  
Sbjct: 143 EIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSIGGGVSF 202

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G  I G  G++ GV+P +K+  DT    NQ G+R GA   YL  +H D+EEF
Sbjct: 203 NISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLGQRPGAGAVYLNIFHSDIEEF 262

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K   D++ R   ++    +PD FM+   ++    L  P  V   +  Y  E +   
Sbjct: 263 LDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLIYPHTVMQEYGQYLDELD-MD 321

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             YE       IK  +KI+A  L  K+     E+G+P+I FK+  N       +G V  S
Sbjct: 322 LMYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIFFKENANREHALNGLGKVKFS 380

Query: 583 NLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           NLCTEI         N   +E  +    S NL +       D  ++  T++TA+R L  V
Sbjct: 381 NLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNIATVMDNKRIKETVKTAMRALTVV 440

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D+ +   +    K+N    ++GLG M     L    I Y S EA++ A+     +++++
Sbjct: 441 SDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAKSFIMYESDEALDFANTFFMMMNYYS 500

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWD 747
           + AS+E+A+E +  +   + S +  G +       D +    +V++    M+  +   W 
Sbjct: 501 LEASMEIAKERQRTFVGCEKSAYADGTYFDKYLNRDYMPKSDKVKELFEGMHIPTIEDWA 560

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK++VK  G+ ++  +AIAP  + + I   + S+ P    + V+            +L 
Sbjct: 561 QLKEQVKEHGVYHAYRLAIAPNQSTSYIMNATASVMPIVDIIEVREYGDSTTYYPMPYLT 620

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                     +A+++D M ++   S  Q+ I
Sbjct: 621 ND-------------------------------NYFYFKSAYDMDQMKVLRLISVIQRHI 649

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           DQ  S  L+ +   S + L   Y  A  +GLK+ YY R+R +T  E
Sbjct: 650 DQGVSTILHTNSKDSTRDLAKYYIYAHKLGLKSLYYTRTRKSTIDE 695


>gi|194432998|ref|ZP_03065281.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
 gi|194418725|gb|EDX34811.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1012]
          Length = 701

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|265985044|ref|ZP_06097779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|264663636|gb|EEZ33897.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
          Length = 713

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR    +   +     +   +K  +   +  Y            +  +L +   +F   
Sbjct: 39  AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336
                  Y R F F  +LG    Y  Y L   +G R  E  +    RV M         E
Sbjct: 87  LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K
Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   
Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L
Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P 
Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQILAEIQFESGYPYIMFEDTVNRANPI 377

Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC             E        +   CNLGS+N+ A       D    
Sbjct: 378 --EGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y S E V
Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A       + 
Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549

Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G      +F+ N+                                 + +  A+
Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694


>gi|157159104|ref|YP_001463985.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli E24377A]
 gi|157081134|gb|ABV20842.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E24377A]
          Length = 714

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    N  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTDHDISCNLGSLNIANTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|261220159|ref|ZP_05934440.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|265996494|ref|ZP_06109051.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|260918743|gb|EEX85396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|262550791|gb|EEZ06952.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 713

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
            AR    +   +     +   +K  +   +  Y            +  +L +   +F   
Sbjct: 39  AARQYFLQHVNKNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86

Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336
                  Y R F F  +LG    Y  Y L   +G R  E  +    RV M         E
Sbjct: 87  LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + A +    + S  +  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K
Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   
Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L
Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                   Y      A   +    +KI+A   ++ +  + FE+G+P+I F+D  N  +P 
Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377

Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621
              G +  SNLC             E        +   CNLGS+N+ A       D    
Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430

Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             TI T++R L  V D+ +   +    + N    AIGLG M     L    I Y S E V
Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
           +  +     +++HA+ AS  +A E   ++  F+ S +  G +  D     A       + 
Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549

Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           R          ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G      +F+ N+                                 + +  A+
Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694


>gi|145296528|ref|YP_001139349.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum R]
 gi|140846448|dbj|BAF55447.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 715

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 165/680 (24%), Positives = 274/680 (40%), Gaps = 74/680 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +E      ++ +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 62  EKIDYLVENKYYDPIVLDKYDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGR 121

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M            A    + + S  F  +TPT  NSG     +  S
Sbjct: 122 RYLERFED---RVCMVALTLADGDRPLAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVS 178

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 179 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKL 238

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 239 LEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 298

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRK 548
           +   +N    LFSP    D+  +YGK F      E+Y+   D   I+  + I+A   ++ 
Sbjct: 299 ELAKRNDDMYLFSP---YDVERIYGKPFADISITEHYDEMVDDDRIRKSK-INARQFFQT 354

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I ++D  N        G +  SNLC+EI               +   E
Sbjct: 355 LAEIQFESGYPYIMYEDTVNA--SNPIEGRITHSNLCSEILQVSTPSEFNDDLTYAEVGE 412

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D      TI TA+R L  V +  +  ++   +K N    A
Sbjct: 413 DISCNLGSLNVAMAM-----DSPNFEKTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHA 467

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M         H+ Y S EA++  +     + +  + AS ++A ER   + +F+ S
Sbjct: 468 IGLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENS 527

Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +  D            + E+  +  ++  +   W  LK  V   G+ N N  A+
Sbjct: 528 KYATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAV 587

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G        + N+                
Sbjct: 588 PPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------- 631

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            +    A+EI    +I++ +   K++DQ  SL L+  +  + + 
Sbjct: 632 ---------------NLEYFEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRD 676

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 677 INRAQIYAWRKGIKTLYYIR 696


>gi|320640664|gb|EFX10200.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. G5101]
          Length = 714

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TA 
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAG 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +    +    + +     EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|331664232|ref|ZP_08365138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
 gi|331058163|gb|EGI30144.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA143]
          Length = 714

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFITTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERSETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|154252043|ref|YP_001412867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
 gi|154155993|gb|ABS63210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
          Length = 771

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 140/615 (22%), Positives = 243/615 (39%), Gaps = 86/615 (13%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTL 358
                   +G+ ++      + RVA  LA  E  +     A  F+  ++ + F+ +   L
Sbjct: 11  MKYRLHGPDGTPVDLTVDDSWRRVANALAEAEAPEARAHWAKRFHEAMAGYRFLPAGRIL 70

Query: 359 FNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             +GT     L +CF+   +PD + GIF  L+E A+  +  GG+G D++ +R  GA + G
Sbjct: 71  AGAGTGRDVTLFNCFVMGEIPDTMEGIFQNLKEAALTMQQGGGIGYDFSTLRPKGAPVKG 130

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
               + G + F+ V +     +   G R+GA+ A +   H D+E F++ ++    +  R 
Sbjct: 131 VGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIEAKQ----EPGRL 186

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +    D FM  V  +A W L                                  V
Sbjct: 187 TMFNLSVLATDAFMAAVKADADWELTFG-----------------------------GTV 217

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
           F+ + A ALW +++   +    P + F D  N R+   +   +H++N C E  L      
Sbjct: 218 FKTLKARALWDRIIAATYAYAEPGVIFIDRINARNNLYYAETIHATNPCGEQPLPPY--- 274

Query: 597 TAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              C LGSINL A            D  +L+  +  AVR +DN ID++   + + +    
Sbjct: 275 -GACLLGSINLAALVKEPFTENAHIDESELSELVHVAVRAMDNTIDVSRFPLPEQRHEAT 333

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG+ G   AL +    Y S  +V +  + M+ +S  A  ASV++A+E+G +  F
Sbjct: 334 AKRRIGLGVTGLADALIMCRARYGSEASVTLIRKWMKVLSRAAYLASVDIAKEKGPFLLF 393

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
               +  G                     T      +++  +   G+RN+   +IAPT T
Sbjct: 394 VADAYLAG--------------------ETISALDKDIRDAIAEHGIRNALVTSIAPTGT 433

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+   G  S  I+P +   Y +  +  D T     +           +  +   +   G+
Sbjct: 434 ISLFAGNVSSGIEPVFAYGYKRKVLMPDGTRREEHV----------RDQAVEKFREMFGA 483

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
              +             A ++ P   I   +  Q +ID + S  + +  + S      +Y
Sbjct: 484 EAALP-------DYFVNAQDLSPAAHIAVQAAVQDYIDSSISKTINVPADISFDDFKSVY 536

Query: 890 RQAWLMGLKTTYYLR 904
             A+  GLK     R
Sbjct: 537 MDAYEKGLKGCTTYR 551


>gi|169827409|ref|YP_001697567.1| ribonucleoside-diphosphate reductase subunit alpha [Lysinibacillus
           sphaericus C3-41]
 gi|168991897|gb|ACA39437.1| Ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           sphaericus C3-41]
          Length = 697

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 166/693 (23%), Positives = 300/693 (43%), Gaps = 71/693 (10%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQI- 300
             +  ++  Y       I   V      ++ +D +++ ++    K   D+ F +      
Sbjct: 35  LEYVNVRLRYFIDIEEKIRYLVDEGYYEKAFIDMYEMDFIKKLYKKAYDYNFRFPSFMSA 94

Query: 301 --LYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              YD Y +        +E  +   + +A+ LA   T   +R+VE         +  +TP
Sbjct: 95  SKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTVLAERSVE----AMMEAYQPATP 150

Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  NSG +   +L SCF  ++ D +  I   +     L++  GG+G + T +R LG  I 
Sbjct: 151 TALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIK 210

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               ++ GVIP  K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R
Sbjct: 211 EILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIR 270

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533
              ++T   IP +F + + ++    LFSP    D+  +YGK        E Y    D  +
Sbjct: 271 LATLSTGIIIPSIFFELMKRDKDIVLFSP---YDIFKVYGKRMSEISISEMYYELLDNPK 327

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE------ 587
           I+  ++++A  L+ ++    FE+G+P+  F D  N   P +++G V  SNLCTE      
Sbjct: 328 IRKIKRLNARRLYTEVKKAQFESGYPFEIFDDNVNDVHPLKNIGRVKMSNLCTEILQVQE 387

Query: 588 ------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                     +       CNLGSI++ A       D++ L  T    +  +  +  I   
Sbjct: 388 TSVITDQDQPNEYGLDVSCNLGSIDIHAASKV--NDFEALIDTAMHLLTNVSQMTHIKN- 444

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +    K+N    ++GLG M     L    I Y S +++   D  ME ++++++ +S+E+
Sbjct: 445 -VPSVAKANQLMHSVGLGCMNLHGHLVTEGIMYGSKDSIHFMDRFMEAMNYYSLKSSMEM 503

Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVK 754
           A+E+   +  F+ S +  G++    +    E            +   +   W  LK+ V 
Sbjct: 504 AKEKAETFYRFEDSDYASGIYFDQYVNKTEEELSPAVLKALGNIPIITSKMWGLLKQDVM 563

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ +S  +AIAPT +I+ I   + SI P  + + V+             L N      
Sbjct: 564 QYGLFHSYRLAIAPTGSISYIRSCTASISPCTERVEVRDYADSRTIYPMPHLTN------ 617

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                                    +   ++  A+++DP  LI+  +  QK +DQ  S+ 
Sbjct: 618 -------------------------ENSHLYVEAYDVDPYDLIDLYAASQKHVDQGISMT 652

Query: 875 LYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           LY+ +  + ++L  +Y  AW+ G+K+ YY+R R
Sbjct: 653 LYVTDNWTTEQLAKVYIYAWVKGIKSVYYVRQR 685


>gi|19553728|ref|NP_601730.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391369|ref|YP_226771.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326710|emb|CAF21192.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 715

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 161/679 (23%), Positives = 270/679 (39%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +E      ++ +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 62  EKIDYLVENKYYDPIVLDKYDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGR 121

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M            A    + + S  F  +TPT  NSG     +  S
Sbjct: 122 RYLERFED---RVCMVALTLADGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVS 178

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 179 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKL 238

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 239 LEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 298

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +   +N    LFSP    D+  +YGK F              + ++ +  I+A   ++ +
Sbjct: 299 ELAKRNDDMYLFSP---YDVERIYGKPFADVSITEHYDEMVDDDRIRKTKINARQFFQTL 355

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I ++D  N        G +  SNLC+EI               +   E 
Sbjct: 356 AEIQFESGYPYIMYEDTVNA--SNPIEGRITHSNLCSEILQVSTPSEFNDDLTYAEVGED 413

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      TI TA+R L  V +  +  ++   +K N    AI
Sbjct: 414 ISCNLGSLNVAMAM-----DSPNFEKTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAI 468

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M         H+ Y S EA++  +     + +  + AS ++A ER   + +F+ S 
Sbjct: 469 GLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSK 528

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +  D            + E+  +  ++  +   W  LK  V   G+ N N  A+ 
Sbjct: 529 YATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVP 588

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G        + N+                 
Sbjct: 589 PTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND----------------- 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           +    A+EI    +I++ +   K++DQ  SL L+  +  + + +
Sbjct: 632 --------------NLEYFEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDI 677

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 678 NRAQIYAWRKGIKTLYYIR 696


>gi|332671992|ref|YP_004455000.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulomonas
           fimi ATCC 484]
 gi|332341030|gb|AEE47613.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas
           fimi ATCC 484]
          Length = 715

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 175/716 (24%), Positives = 282/716 (39%), Gaps = 85/716 (11%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +  AR    +   +     +   +K  +              +E       +       
Sbjct: 38  DREAARQYFLQHVNQNTVFFHDLDEKLDY-------------LVENKYYDPAVLAQYDRA 84

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +    RV M        
Sbjct: 85  FIKTLFEYAYSKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALSLAAG 141

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
            +  AV   + + S  F  +TPT  N G     +  SCFL  + D++  I   +     L
Sbjct: 142 DQDFAVNLVDEIVSGRFQPATPTFLNLGKAQRGEPVSCFLLRIEDNMESIARGINSALQL 201

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL 
Sbjct: 202 SKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLH 261

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +
Sbjct: 262 AHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEPMYLFSP---YDVERV 318

Query: 514 YGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           YG  F      E  YE  +  A R       KISA   ++ +  + FE+G+P++ F+D  
Sbjct: 319 YGVPFADVNVTEKYYEMVDNAAIR-----KTKISAREFFQTLAELQFESGYPYVMFEDTV 373

Query: 568 NIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
           N  +P    G +  SNLC+EI       T N       V    S NL +       D   
Sbjct: 374 NRANPI--KGKITHSNLCSEILQVSTPSTFNEDLSYAEVGRDISCNLGSMNIALSMDSPD 431

Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++ TA+R L  V D  +  ++   K +N    AIGLG M     L    I Y S E 
Sbjct: 432 FGKSVETAIRALTAVSDQTDIESVPSVKLANRGGHAIGLGQMNLHGYLARERIFYGSDEG 491

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----- 733
           ++  +     +++HAI AS  LAQER  A+  F+ S +  G +    +      R     
Sbjct: 492 LDFTNIYFYTVAYHAIRASNLLAQERKQAFYGFEDSKYATGEYFQKYVEKEWAPRTERVR 551

Query: 734 ---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
               E  ++  ++  W EL   V+  G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 552 VLFAEAGVHIPTQDDWRELAALVQEHGLYNQNLQAVPPTGSISYINHSTSSIHPIASKIE 611

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G       F+ N+                                 + +  A+
Sbjct: 612 IRKEGKIGRVYYPAPFMTND-------------------------------NLEYYQDAY 640

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           EI    +I++ +   + +DQ  SL L+  +  + + L+     AW  G+KT YY+R
Sbjct: 641 EIGYEKVIDTYAEATQHVDQGLSLTLFFKDTATTRDLNKAQIYAWKKGIKTIYYIR 696


>gi|296104352|ref|YP_003614498.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058811|gb|ADF63549.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 180/723 (24%), Positives = 297/723 (41%), Gaps = 73/723 (10%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP---------EYFCRYIEEGV 264
           P+Y  + A   L    RE      K            + P         E     + EG 
Sbjct: 14  PDYHALNAMLNLYD--REGRIQFGKDHDAVDAFFAAHVRPNSVTFASQDERLDYLVNEGY 71

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFM 322
               +        +V L             +LG    Y  Y L   +G R  E  +   +
Sbjct: 72  YEERVLSRYDRAFVVRLFERAHASGFRFQTFLGAWKYYTSYTLKTFDGKRYLESFEDRVV 131

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381
            VA+ LA  +    ++ +E    + S  F  +TPT  N G     +L SCFL  + D++ 
Sbjct: 132 MVALTLAQGDEALAEQLME---EILSGRFQPATPTFLNCGKAQRGELVSCFLLRIEDNME 188

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ 
Sbjct: 189 SIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQL 248

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K   +NA   L
Sbjct: 249 GARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAKENADMAL 308

Query: 502 FSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           FSP    D+  +YGK F ++A      +    +    + I+A   ++++  + FE+G+P+
Sbjct: 309 FSP---YDIERIYGKAFGDVAISELYDELVADDRIRKKYINARDFFQRLAEIQFESGYPY 365

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------LGSINLLAHFAN 613
           I ++D  N  +P    G ++ SNLC+EI   +S+                S NL +    
Sbjct: 366 IMYEDTVNRANPI--AGRINMSNLCSEILQVNSASTYDENLDYADIGKDISCNLGSLNIA 423

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           +  D      T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I
Sbjct: 424 HTMDSPDFGRTVDTAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGI 483

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP-----IDSI 726
            Y SPE ++  +     I++HA+  S+ LA+E    ++ F+ S +  G +       D  
Sbjct: 484 AYGSPEGLDFTNLYFYTITWHALHTSMMLARERNQRFAGFEQSRYASGEYFSQYLESDWQ 543

Query: 727 GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
               +VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 544 PKTEKVRALFARAGIVLPTREMWQQLRDDVMRHGIYNQNLQAVPPTGSISYINHATSSIH 603

Query: 784 PSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + ++    +G       F+ N                               +  
Sbjct: 604 PIVSKIEIRKEGKTGRVYYPAPFMTN-------------------------------ENL 632

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTY 901
            ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT Y
Sbjct: 633 ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLY 692

Query: 902 YLR 904
           Y+R
Sbjct: 693 YIR 695


>gi|320186461|gb|EFW61189.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           flexneri CDC 796-83]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAYAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   + + E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|320180202|gb|EFW55138.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           ATCC 9905]
 gi|332088655|gb|EGI93768.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 155-74]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|326536371|ref|YP_004300812.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133]
 gi|299483452|gb|ADJ19546.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133]
          Length = 803

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 166/851 (19%), Positives = 305/851 (35%), Gaps = 125/851 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G    F+  ++  ++E +C G   ++   +       + D ++ ++++ A++ 
Sbjct: 1   MKVIKSSGIAQDFDPAKIIQVLEWSCEG-TQINPYELYERAQPFIKDQMTTAEIQRAIVK 59

Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  +E +Y  V +   +  LR+EV          A                 + G
Sbjct: 60  VAADSITVEESDYQFVASNLAMFGLRKEVYGQFDPPHLLA-----------QVKAKTDLG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           V    + +     +   L   + ++RDF F Y G   + D+Y +    NG+  E PQ  F
Sbjct: 109 VYDPEIVQKYSAEEFEELNRYINHDRDFNFTYAGTMQMKDKYLVKDRSNGAIHETPQFTF 168

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M + M L  ++ +  + +   +FY+ +S       TP +    T   Q SSC L    D 
Sbjct: 169 MLIGMCLHQEDEKSKRLQYVKDFYDAVSLKQISLPTPIMAGVRTPTRQFSSCVLIESGDS 228

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G     +R  G+ I     K  GV PF K  N    + +
Sbjct: 229 LDSINETSSAIISYVSKRAGIGVSGGAIRAEGSKIGPGEVKHTGVTPFWKHFNTGVHSCS 288

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG RKG+   Y   WH++ E  + L+ N G +  R   M+    + +L ++R   N   
Sbjct: 289 QGGIRKGSATCYWPGWHLECENLIVLKNNKGIEENRIRHMDYGIQLNNLMIERYLNNDYI 348

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT-MLFETGH 558
           TLFSP+             E  +     Q +       ++I A   ++ +       T  
Sbjct: 349 TLFSPEINGGQLRDAFYADEELFRTMYEQLEATPAVRKKRIKATEYFQSLFMPERANTAR 408

Query: 559 PWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSS----------------------- 594
            +    D  N      + +  V  SNLC EI L++                         
Sbjct: 409 IYPQHVDNANNFGPWIRSIAPVKMSNLCAEIALHTMPLATYADRIIAVPEGSLIAFVEKY 468

Query: 595 -------------------EETAVCNLGSINL-----------LAHFANNQFDY---DKL 621
                               E       S+N+           L+ +  + FD+   D++
Sbjct: 469 GTKKAVLPTVENEFRRIGRVEDLKEGEISLNVQEDLGEIALCTLSAWVLDNFDWKNQDEV 528

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
               +  VR LDN++D   +  + A K    +R++G+G+  +   L      Y      E
Sbjct: 529 NRIGKVMVRALDNLLDYQDYPHQNALK-AKEYRSLGIGVTNYAGWLAANASSYEDD--HE 585

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            + E  E + +  ++AS++LA+E+G       + + QG+ PID      +      +   
Sbjct: 586 TSHELFERLQYALVNASIDLAEEKGPSPMLYKTKYGQGLLPIDWYCKNVDD----LVAPN 641

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             + W++ + R+   GMRN    A  P  T + +   +  ++ + + +  K +  G F  
Sbjct: 642 YVMDWEDTRARLIKFGMRNVTLSAQMPCETSSQVSNSTNGVERALKPVSYKQSKDGSFNQ 701

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE----IDPMWLI 857
           +                       Y   S+             +  A+E          +
Sbjct: 702 IVP--------------------NYDINSV------------FYEFAWESAAKFGNKGYL 729

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSRSATS 910
              +  QK+ DQ+ SLN Y    S          +       +  G K  YY  +   + 
Sbjct: 730 TKMAIMQKFWDQSISLNTYYVPASYSNGKVPMSVMMDDMLFCFYYGNKNMYYHNTDDGSG 789

Query: 911 VEKSTLKGVDG 921
            + S+    +G
Sbjct: 790 ADDSSEAACEG 800


>gi|300941042|ref|ZP_07155561.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
 gi|300454206|gb|EFK17699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 21-1]
          Length = 701

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|294993445|ref|ZP_06799136.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis 210]
          Length = 693

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 280/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 655 VNKAQIYAWRKGIKTLYYIR 674


>gi|139472880|ref|YP_001129418.1| ORF61 [Human herpesvirus 8]
 gi|87196890|gb|ABD28916.1| ORF61 [Human herpesvirus 8]
          Length = 792

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 167/772 (21%), Positives = 293/772 (37%), Gaps = 92/772 (11%)

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYER------- 289
             +  H  M+   P    +Y+  G+   +L   +  F   ++  L + L   R       
Sbjct: 56  AGRLWHQIMEARCPATLKQYL--GIFRGVLGHRVESFIQKNIDALEDMLCAYRRSKAYED 113

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALK--ETEKEKRAVE---- 341
                YL    LYD Y L   G+    E     FMRV++ +A +  E E           
Sbjct: 114 TLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARDLIE 173

Query: 342 -------------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGA 386
                         +  L++ H  C+TP L ++G    QL+SCF+   ++ ++   +   
Sbjct: 174 DAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNEPGTLDAL 233

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + + L     G+G D T                + +   LK+ +      N    R  
Sbjct: 234 YHDMSPLLASKSGVGLDVTSFS-----------HQKNIASCLKLVDAQVHYFNDNNIRPV 282

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
              AY+E WH  + +FL+ +     D  R H +     IP LF +   ++    W LF P
Sbjct: 283 GASAYMELWHSQICDFLNAKLPENPD--RCHSLFQGVCIPTLFFRMYEKDPSKLWYLFDP 340

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +L  LYG  F+  YE   R       K    +   ++   ++  + +TG P++  K
Sbjct: 341 ATAPNLIKLYGAAFDNEYERLVRA-----GKYVSCMPLKSMMFTLIHTIIKTGSPYVLLK 395

Query: 565 DPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----------- 612
           +  N        G+ ++ SNLC EI        T+VCNL +I L                
Sbjct: 396 EALNEHHWTDTQGMAINCSNLCAEIVQLPGRN-TSVCNLANICLPKCLRTVESARVGTTD 454

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                F ++ L   +R AV V++  I    H     ++     R++G+G+ G       L
Sbjct: 455 ANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVERGQK-ERSMGIGVQGLADVFAEL 513

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGL 728
              Y   E+ E+     + + + A+  S  L  E     +  ++ S + +G F   +   
Sbjct: 514 GYGYLDAESAELDKNIFQSMYYTAVETSHNLVLEGQGVPFHGWEVSNFAKGRFHWQTWEG 573

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                         R  WD L K +   G+ NS  +A+ PTA  + + G ++S+ P + N
Sbjct: 574 EDASFVP-------RHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESVYPFFAN 626

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  K     +    N     ++   DL        ++ + G +    +   +  ++  TA
Sbjct: 627 ISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRERYRVFLTA 680

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLR 904
           F+  P  L++ A  R  ++DQ+QS++ +L E    +   L  +    + +GLKT  YY R
Sbjct: 681 FDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKTLMYYCR 740

Query: 905 S--RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +S+ +  +          + +                SC +D EC VCQ
Sbjct: 741 VQKQSSLTALQCLADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPECLVCQ 792


>gi|260856786|ref|YP_003230677.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257755435|dbj|BAI26937.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|323154886|gb|EFZ41078.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli EPECa14]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYPNQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|86158906|ref|YP_465691.1| ribonucleotide reductase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775417|gb|ABC82254.1| ribonucleotide reductase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 595

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 165/636 (25%), Positives = 267/636 (41%), Gaps = 78/636 (12%)

Query: 293 FEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
                  +L  RY L   G   IE P+A F RVA  +A  E    +   A  F   +++ 
Sbjct: 4   LGENARHVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEAPAARALWAERFEARMAAL 63

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             + ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R 
Sbjct: 64  ELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRP 123

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++  
Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAA 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G +     + N +   PD   +   +   W L  P                         
Sbjct: 184 GLE-----NFNISVAAPDALFQAAARGEPWALRHPR------------------------ 214

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 V R++ A AL  ++    + +G P + F D     +P   +G   + N C E  
Sbjct: 215 ---GGAVVREVDAGALLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQP 271

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         C LGS+NL       + D+++L + +R  VR+LD+V+++N   + +  + 
Sbjct: 272 LLPF----EACTLGSVNLARFERGGRVDHERLGACVREGVRLLDDVLEVNVWPLPQIAEI 327

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +  +R IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+ 
Sbjct: 328 SRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFP 387

Query: 710 SFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F  S     G  P                                    RN+    IAP
Sbjct: 388 GFASSAPARAGGRP-----------------------------------RRNATVTTIAP 412

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T T+A I G S  I+P +   YV+  + GD  +         +                 
Sbjct: 413 TGTLAIIAGCSSGIEPLFALTYVRHAL-GDAALPEEH-PALGRALLAAGAEAALPAVRAA 470

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           G    +  +P+ + ++ ATA ++ P   +   +  Q+ +D   S  + L    + + +  
Sbjct: 471 GRARGVAGVPEAVARVFATAHDVAPEAHVRMQAAFQRHVDNGVSKTINLPRTATVEDVAG 530

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            YR A+ +G K     R  S       +    +G+L
Sbjct: 531 AYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566


>gi|82545244|ref|YP_409191.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           Sb227]
 gi|81246655|gb|ABB67363.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           boydii Sb227]
 gi|332092048|gb|EGI97126.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii 3594-74]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAYAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   + + E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|291455663|ref|ZP_06595053.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium breve DSM 20213]
 gi|291382591|gb|EFE90109.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium breve DSM 20213]
          Length = 731

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 159/704 (22%), Positives = 271/704 (38%), Gaps = 71/704 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     A + +      E     I        +        L  +   ++    
Sbjct: 50  KAAEREYVTGHVAANIKRFDSTAERLEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGF 109

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
               +LG    Y  Y L     R+ + + F  R A          E++A+E+ + + +  
Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGRLYL-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGR 168

Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N G     +  SCFL  + D++  I   +     L+K  GG+    + +R 
Sbjct: 169 FQPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLRE 228

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++  
Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   +     IPD+  +   Q A   LFSP    D+  +YGK F           
Sbjct: 289 ADEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDE 345

Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGV 578
              + ++ +  I A   +  +  + FE+G+P+I F+D  N  +P             +  
Sbjct: 346 MVADDRIKKTYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQ 405

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
           V   +   E    +       CNLGS+N+             LA T+ TA+R L +V + 
Sbjct: 406 VQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAIDG------GLAYTVETAIRALTSVAEH 459

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +   +++N    AIGLG M     L    I Y S E ++  D     +++HA  A
Sbjct: 460 TSIDAVPSIRRANEEGHAIGLGQMNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAYRA 519

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT--------------S 742
           S  LA E G  + SF  S + +     +      + R  L                   +
Sbjct: 520 SHALAVEHGHPFKSFATSDYAKPAGQGNYFDKYTDGRRSLEPRTAKVRELFAKYGIEIPT 579

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTV 801
              W+ L+  +   G+ N N  A+ PT +I+ I   + SI P    + ++     G    
Sbjct: 580 VSDWETLRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYY 639

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
             +++ N+                                 + +  A+EI    ++++ +
Sbjct: 640 PAAYMTND-------------------------------NLEYYEDAYEIGWKAIVDTYA 668

Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
              + +DQ  SL L+  +  + + L+     AW  G+KT YY+R
Sbjct: 669 EATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712


>gi|311278370|ref|YP_003940601.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
 gi|308747565|gb|ADO47317.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter
           cloacae SCF1]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 181/707 (25%), Positives = 286/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
           + R    K  R+ +        +           E     +  G     +        + 
Sbjct: 29  SGRIQFSK-DRDAVAAFMSAHVQPNSAIFASA-QERLDWLVAGGYYDEAVLTRYEQAFVT 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  DLFACASAYGFQFQTFLGAWKFYTSYTLKTFDGKRY--LEHFPDRVVMVALTLAQGDEAL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G     +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ARQLTDEMLSGRFQPATPTFLNCGKMQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLNAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP    D+  LYGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVTIPDITFRLARENARMALFSP---YDVERLYGKA 321

Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F         +    + +V +  ISA   ++ +  + FE+G+P+I F+D  N  SP    
Sbjct: 322 FGDIAVTEMYEQLVADARVRKTWISAREFFQTLAEIQFESGYPYIMFEDTVNRASPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVCN-------LGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC EI   +S+ E              S NL +    +  D      T+ TAV
Sbjct: 380 GRINMSNLCAEILQVNSASEFDENLDYARVGRDISCNLGSLNIAHTMDSPDFGRTVATAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +   +   +  N    AIGLG M     L    I Y SPEA+E  +    
Sbjct: 440 RALTAVSDMSHIRAVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALEFTNLYFC 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA---MN 739
            I++HA++ S+ LA+ER  +++ F  S +  G +       D       VR       + 
Sbjct: 500 AITWHALNTSMLLARERGQSFAGFAQSRYASGEYFAAYLEGDWQPKTQVVRTLFQRAGIT 559

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  AIAPT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTRDMWRQLRDAVMRYGIYNQNLQAIAPTGSISYINHATSSIHPVASKIEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N+                                  ++  A++I P  +I+
Sbjct: 620 VYYPAPFMTND-------------------------------NLHLYQDAYDIGPEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   K +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATKHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKTLYYIR 695


>gi|307727744|ref|YP_003910957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1003]
 gi|307588269|gb|ADN61666.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1003]
          Length = 859

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 146/611 (23%), Positives = 248/611 (40%), Gaps = 76/611 (12%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
                F RVA G+A  E E  + +VE  F + L                     L +CF+
Sbjct: 46  SADDVFRRVAHGVAAAEPEALRESVEALFVDNLRHGALGAGRIMSAAGSGIAATLINCFV 105

Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D + G        I+ AL + A   +  GG+G +++ +R  GA +H T+  + G  
Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 165

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  +
Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNVSVGV 221

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V +N  W L    E S      G            +     + V+ +  A  +
Sbjct: 222 TDQFMRAVEENELWQLVHRAEPSPALRAAGDM----------RQRDDGMWVYSERPAREI 271

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W +++   ++   P I F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 272 WDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 327

Query: 606 NLLAHF---------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL                 FD+D LA   RT VR LDNV+D+    + +    +   R I
Sbjct: 328 NLTRFVLEPFAQLKGRKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRI 387

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F    +
Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAKRY 447

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                              L     +    ++LK  ++  G+RNS+ ++IAPT T++   
Sbjct: 448 -------------------LEPGTFASRLPEDLKDAIRRDGIRNSHLLSIAPTGTVSLAF 488

Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               S  I+P++   Y +             ++ +  +     E     L    G  G++
Sbjct: 489 ADNASNGIEPAFSWTYKRMK-----------VMADGSRETFDVEDYAYRLYRELG--GDV 535

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
            R+PD       +A E+     ++  +  Q ++D + S  + +  +   +  + +Y  AW
Sbjct: 536 SRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPFEAFESLYFDAW 591

Query: 894 LMGLKTTYYLR 904
             GLK     R
Sbjct: 592 KSGLKGLATYR 602


>gi|160896563|ref|YP_001562145.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Delftia acidovorans SPH-1]
 gi|160362147|gb|ABX33760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Delftia acidovorans SPH-1]
          Length = 840

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 147/696 (21%), Positives = 264/696 (37%), Gaps = 85/696 (12%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           M   +L    +          + + L +L ++Y         E+    + RVA  LA  E
Sbjct: 27  MHRENLGRAQDAAD------LQPISLDVLREKYLKDGETGVGEL----YARVARALASVE 76

Query: 333 -TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYG 382
              +       +        + +   +  +GT     L +CF+  V D           G
Sbjct: 77  PEARRAECEALFLANLQAGAIGAGRIMSAAGTDLQATLINCFVQPVGDCIQGVDDGGYPG 136

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I+ AL+E A   +  GG+G D++ +R  GA +  T   + G   ++ V + +   V   G
Sbjct: 137 IYEALREAAETMRRGGGVGYDFSRIRPRGAEVRATASLASGPCSYINVFDQSCATVESAG 196

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+GA    L   H DV EF+  ++  G    R ++ N +  + D FM+ V ++  W L 
Sbjct: 197 ARRGAQMGVLRIDHPDVLEFITAKRTPG----RWNNFNVSVGVSDAFMQAVAEDQPWHLV 252

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
                       G        +           V++ + A  LW  ++   ++   P I 
Sbjct: 253 HRAR-------PGTALLEQGAHQRADGQ----WVYQTLPARTLWDTIMRSAYDFAEPGIL 301

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------- 615
           F D  N  +  ++   + ++N C E  L S       C+LG + L     +         
Sbjct: 302 FLDHINDDNNLRYCEEIAATNPCGEQPLPSY----GCCDLGPVILTRFVRHPFGFAGEPV 357

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD++     +   VR LDNV+++    + + ++ +   R IG+G  G  +AL +L + Y 
Sbjct: 358 FDFEAFERAVAVQVRALDNVLELTWWPLPQQREESEAKRRIGVGFTGMGNALAMLRLRYD 417

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           +PE   +A    E +   A  ASVELA+E+GA+  F                   +    
Sbjct: 418 APEGRAMAARIAERMRDAAYGASVELAREKGAFPKF-------------------DADGY 458

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           LA    +    + L++R++T G+RNS+ ++IAPT T++       S  I+P +   Y + 
Sbjct: 459 LAEGTFASRLPEALRQRIRTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYKRK 518

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             + D      + V +               +   G +  +            +A ++  
Sbjct: 519 KRTADGGS-AEYAVED---------HAWRLYRSLGGDVQQLP-------AYFVSALQMPA 561

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              I      Q ++D A S  + +  +   +    +YRQAW  GLK     R  +     
Sbjct: 562 AGHIAMMQAVQPFVDTAISKTVNVAADYPYEDFKDLYRQAWKAGLKGLATYRPNTILGAV 621

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
             T      +  A P     S++    + +   S  
Sbjct: 622 LETHAPESAEKPASPAPAGASASAPDPLRTVIESRP 657


>gi|323188443|gb|EFZ73729.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli RN587/1]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYDELVADEHIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|331658786|ref|ZP_08359728.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
 gi|331053368|gb|EGI25397.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli TA206]
          Length = 714

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|307132177|ref|YP_003884193.1| ribonucleoside-diphosphate reductase 2, subunit alpha [Dickeya
           dadantii 3937]
 gi|306529706|gb|ADM99636.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Dickeya
           dadantii 3937]
          Length = 715

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 177/743 (23%), Positives = 294/743 (39%), Gaps = 85/743 (11%)

Query: 204 FSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            ++   +   P    +Y  + A   +      +     ++  +    +       +F   
Sbjct: 1   MATAEFLTDAPSSQLDYHALNAMLNIYDADGRIQFEQDRQAIQVYFRDHVLPRTRHFPSL 60

Query: 260 IEE-------GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING- 311
            E+       G     +        +V L       R     +LG    Y  Y L     
Sbjct: 61  EEKLRWLQQEGYYEPQVLARYQLDFIVELFQRAAEHRYQFQSFLGAFKFYTSYALKTFDG 120

Query: 312 -SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
              +E        VA+ LA  +    + A +  + + S  F  +TPT  N G +   +L 
Sbjct: 121 SQYLESYDDRACMVALTLAQGD---TQLARQLVDEMMSGRFQPATPTFLNCGKQQRGELV 177

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 178 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIMK 237

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD R+   D++ R   ++    IPD+ 
Sbjct: 238 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDIT 297

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
           ++    N    LFSP    D+  +YG         E Y+       I+ +  ++A   ++
Sbjct: 298 LRLARANQDMHLFSP---YDVERVYGMPLSEISVSEKYDELVSHPGIRKW-TLNARQFFQ 353

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597
            +  + FE+G+P++ F+D  N  +P    G +  SNLC+EI   S + E           
Sbjct: 354 TLAEIQFESGYPYLMFEDTVNRHNPV--AGRITMSNLCSEILQVSRASEYQEDLNYRQVG 411

Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654
               CNLGS+N+         D   LA T+  AVR L  V D+ +   +      N    
Sbjct: 412 KDISCNLGSLNIARV-----MDGGNLARTVEIAVRALTAVSDMSHIGAVPSIANGNTESH 466

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKG 713
           AIGLG M     L    + Y S EA++  +     +++HA+  S  LAQE    ++ F  
Sbjct: 467 AIGLGQMNLHGYLAREGLFYGSEEALDFTNLYFYAVTYHALRTSSRLAQERNQTFAGFAD 526

Query: 714 SLWDQGVFP-----IDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMA 765
           S +  G F       +   +   VR+  A    +      W  LK +V   G+ N N  A
Sbjct: 527 SQYASGAFFDRYLSQEWQPVTERVRELFACAGIALPLPEDWLALKAQVMRHGLYNQNLQA 586

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824
           + PT +I+ I   + SI P    + ++     G       ++ N+               
Sbjct: 587 VPPTGSISYINHATASIHPIVSRIEIRKEGKLGRVYYPAPYMTND--------------- 631

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                            ++ +  A+EI P  +I++ +   + +DQ  SL L+  +  + +
Sbjct: 632 ----------------NQRFYQDAYEIGPEKIIDTYAVATRHVDQGLSLTLFFPDTATTR 675

Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906
            ++     AW  G+KT YY+R R
Sbjct: 676 DINKAQIYAWKKGIKTLYYIRVR 698


>gi|1718317|gb|AAC57146.1| ORF 61 [Human herpesvirus 8 type M]
 gi|2246520|gb|AAB62645.1| ORF 61 [Human herpesvirus 8]
 gi|261853542|gb|ACY00464.1| ORF61 [Human herpesvirus 8]
 gi|312275209|gb|ADQ57946.1| core gene UL39 family protein [Human herpesvirus 8]
          Length = 792

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 167/772 (21%), Positives = 293/772 (37%), Gaps = 92/772 (11%)

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYER------- 289
             +  H  M+   P    +Y+  G+   +L   +  F   ++  L + L   R       
Sbjct: 56  AGRLWHQIMEARCPATLKQYL--GIFRGVLGHRVESFIQKNIDALEDMLCAYRRSKAYED 113

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALK--ETEKEKRAVE---- 341
                YL    LYD Y L   G+    E     FMRV++ +A +  E E           
Sbjct: 114 TLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARDLIE 173

Query: 342 -------------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGA 386
                         +  L++ H  C+TP L ++G    QL+SCF+   ++ ++   +   
Sbjct: 174 DAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNESGTLDAL 233

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
             + + L     G+G D T                + +   LK+ +      N    R  
Sbjct: 234 YHDMSPLLASKSGVGLDVTSFS-----------HQKNIASCLKLVDAQVHYFNDNNIRPV 282

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504
              AY+E WH  + +FL+ +     D  R H +     IP LF +   ++    W LF P
Sbjct: 283 GASAYMELWHSQICDFLNAKLPENPD--RCHSLFQGVCIPTLFFRMYEKDPSKLWYLFDP 340

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               +L  LYG  F+  YE   R       K    +   ++   ++  + +TG P++  K
Sbjct: 341 ATAPNLIKLYGAAFDNEYERLVRA-----GKYVSCMPLKSMMFTLIHTIIKTGSPYVLLK 395

Query: 565 DPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----------- 612
           +  N        G+ ++ SNLC EI        T+VCNL +I L                
Sbjct: 396 EALNEHHWTDTQGMAINCSNLCAEIVQLPGRN-TSVCNLANICLPKCLRTVESARVGTTD 454

Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                F ++ L   +R AV V++  I    H     ++     R++G+G+ G       L
Sbjct: 455 ANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVERGQK-ERSMGIGVQGLADVFAEL 513

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGL 728
              Y   E+ E+     + + + A+  S  L  E     +  ++ S + +G F   +   
Sbjct: 514 GYGYLDAESAELDKNIFQSMYYTAVETSHNLVLEGQGVPFHGWEVSNFAKGRFHWQTWEG 573

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                         R  WD L K +   G+ NS  +A+ PTA  + + G ++S+ P + N
Sbjct: 574 EDASFVP-------RHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESVYPFFAN 626

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  K     +    N     ++   DL        ++ + G +    +   +  ++  TA
Sbjct: 627 ISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRERYRVFLTA 680

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLR 904
           F+  P  L++ A  R  ++DQ+QS++ +L E    +   L  +    + +GLKT  YY R
Sbjct: 681 FDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKTLMYYCR 740

Query: 905 S--RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              +S+ +  +          + +                SC +D EC VCQ
Sbjct: 741 VQKQSSLTALQCLADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPECLVCQ 792


>gi|312984311|ref|ZP_07791654.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|312984330|ref|ZP_07791673.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894276|gb|EFQ43355.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894295|gb|EFQ43374.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus CTV-05]
          Length = 727

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 177/750 (23%), Positives = 313/750 (41%), Gaps = 79/750 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++    + E  NY             +E      +   +    +   L  E   
Sbjct: 13  DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 63

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 64  YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 123

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 124 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYVSCYLL 180

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 181 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 240

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 241 FSYANQLGQRQGAGAVYLSAHHPQILQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 300

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q       + +  ISA   ++ +  + 
Sbjct: 301 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPCIKKTFISARKFFQTIAEVQ 357

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 358 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 417

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL   +  +V+ L+ V    +       +K N  +RAIGLG 
Sbjct: 418 LGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA++ GA+  FK S +  G 
Sbjct: 474 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 533

Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I          + E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 534 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 593

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +         V ++                           
Sbjct: 594 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 626

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L++++  + + L+  Y 
Sbjct: 627 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 683

Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            A+     + YY+R R       E  T   
Sbjct: 684 YAFKKRCNSIYYVRIREKVLAGSENLTADE 713


>gi|91212036|ref|YP_542022.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UTI89]
 gi|215487996|ref|YP_002330427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218559667|ref|YP_002392580.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli S88]
 gi|237706703|ref|ZP_04537184.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|312965590|ref|ZP_07779820.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|91073610|gb|ABE08491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli UTI89]
 gi|215266068|emb|CAS10488.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O127:H6 str. E2348/69]
 gi|218366436|emb|CAR04188.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli S88]
 gi|226899743|gb|EEH86002.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp.
           3_2_53FAA]
 gi|294491935|gb|ADE90691.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli IHE3034]
 gi|307625753|gb|ADN70057.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli UM146]
 gi|312289739|gb|EFR17629.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 2362-75]
 gi|323951103|gb|EGB46979.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323957112|gb|EGB52837.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 714

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 178/732 (24%), Positives = 297/732 (40%), Gaps = 73/732 (9%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                + EG     +        ++ L             +LG    Y  Y L   +G R
Sbjct: 62  RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
               + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SCF
Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+    
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +NA   LFSP    D+  +YGK F   A   +  +    E    + ++A   ++++  
Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADVAISEHYDELVADERIRKKYLNARDFFQRLAE 356

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604
           + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  S
Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    +  D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M  
Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G + 
Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534

Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                           EL         +R  W +L+  V   G+ N N  A+ PT +I+ 
Sbjct: 535 SQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594

Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++    +G       F+ N                         
Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                 +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 684 WRKGIKTLYYIR 695


>gi|15610188|ref|NP_217567.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Rv]
 gi|31794229|ref|NP_856722.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           bovis AF2122/97]
 gi|121638935|ref|YP_979159.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662904|ref|YP_001284427.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|167969653|ref|ZP_02551930.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|215412906|ref|ZP_03421610.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis 94_M4241A]
 gi|218754816|ref|ZP_03533612.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis GM 1503]
 gi|224991427|ref|YP_002646116.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254552126|ref|ZP_05142573.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188083|ref|ZP_05765557.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis CPHL_A]
 gi|289448729|ref|ZP_06438473.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CPHL_A]
 gi|289763229|ref|ZP_06522607.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis GM 1503]
 gi|297635682|ref|ZP_06953462.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732680|ref|ZP_06961798.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN R506]
 gi|298526521|ref|ZP_07013930.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306777357|ref|ZP_07415694.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu001]
 gi|306781261|ref|ZP_07419598.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu002]
 gi|306785902|ref|ZP_07424224.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu003]
 gi|306790256|ref|ZP_07428578.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu004]
 gi|306794751|ref|ZP_07433053.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu005]
 gi|306804836|ref|ZP_07441504.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu008]
 gi|306809029|ref|ZP_07445697.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu007]
 gi|306969129|ref|ZP_07481790.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu009]
 gi|307081184|ref|ZP_07490354.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu011]
 gi|313660012|ref|ZP_07816892.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis KZN V2475]
 gi|3261509|emb|CAA16136.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|31619824|emb|CAD96764.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|121494583|emb|CAL73064.1| Probable ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148507056|gb|ABQ74865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis H37Ra]
 gi|224774542|dbj|BAH27348.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|289421687|gb|EFD18888.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis CPHL_A]
 gi|289710735|gb|EFD74751.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis GM 1503]
 gi|298496315|gb|EFI31609.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214249|gb|EFO73648.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu001]
 gi|308325904|gb|EFP14755.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu002]
 gi|308329426|gb|EFP18277.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu003]
 gi|308333271|gb|EFP22122.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu004]
 gi|308336926|gb|EFP25777.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu005]
 gi|308344609|gb|EFP33460.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu007]
 gi|308348557|gb|EFP37408.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu008]
 gi|308353283|gb|EFP42134.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu009]
 gi|308361068|gb|EFP49919.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis SUMu011]
          Length = 693

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 280/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 655 VNKAQIYAWRKGIKTLYYIR 674


>gi|222099545|ref|YP_002534113.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga neapolitana DSM 4359]
 gi|221571935|gb|ACM22747.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga neapolitana DSM 4359]
          Length = 836

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 163/700 (23%), Positives = 291/700 (41%), Gaps = 101/700 (14%)

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEK 335
           ++ L+  ++   D         IL DRYF+   +G  +E   +    RVA  +A  E   
Sbjct: 9   IMKLSTLIEKWIDVEPSRNAQTILKDRYFMRDLDGKYLETRWEDVARRVARVVATAELLN 68

Query: 336 ------------EKRAVEFYNLLSSFHFMCSTPTLFNS---------------------- 361
                       ++    F+ +L +  F+ ++PTLFN+                      
Sbjct: 69  PSYKKGEKLDRIKEWEDTFFKILKARLFLPNSPTLFNAGLGVRYELLWKPIDQMTLEDYE 128

Query: 362 -----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
                      LS+CF+  V D +  IF A++E A++ K  GG+G++++ +R  G+ + G
Sbjct: 129 EIYRTRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAG 188

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRR 475
           T+GK+ G + F+ V N     V QG +R+GA+   L   H D+EEF+D ++    +    
Sbjct: 189 THGKASGPVSFMHVFNSAISVVKQGYRRRGALMGILNIDHPDIEEFIDAKRENTGEAVLN 248

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEI 534
             +++       + M +                             YE   E +      
Sbjct: 249 FFNLSVG-----IPMDKKEIL-----------------------KLYEEDGELELSHPRS 280

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            + +++    L+RK+ +  +++G P + F    N   P      ++S+N C EI      
Sbjct: 281 TIRKRVKIRELFRKIASNAWKSGDPGLAFLGEMNRYYPLYPHRKINSTNPCGEI----GL 336

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            +   CNLGSI++   + N   D + L   ++ AVR LD+VID+N   I+K  K+    R
Sbjct: 337 SDYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDDVIDVNVFPIDKITKAVKESR 396

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGF   L+ L +PY S EA + A   M FI+ HA  AS EL +E+G +   + S
Sbjct: 397 RLGLGIMGFADLLYKLELPYDSQEARDFASNLMAFIALHAHRASYELGKEKGNFPLLEIS 456

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
            +              E     AM  ++         ++     RN   + IAPT +I+N
Sbjct: 457 RY-----------RTEEGFVPFAMGTSNYDDEIREVMKMTREYRRNVALLTIAPTGSISN 505

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYH-- 827
           I   S  ++P++   Y +     D        VN  L  +L      D  ++  ++    
Sbjct: 506 IADTSSGLEPNFLLAYTRYMTKEDGTKEPLLYVNQVLREKL------DPEILRRIEKDLI 559

Query: 828 -DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
             GS+ +I  +P+ +K++   A +IDP+  +      Q+++D   S  + +    +   +
Sbjct: 560 EKGSLKDIPDVPEKIKRVFVVALDIDPIDHLLMQDAFQRYVDNNISKTINMPQSATVDDV 619

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
             +Y +A    ++     R  S  +   +           
Sbjct: 620 LNVYLEALRTNVRGITIYRDGSLQTQVLTKALKTPEAPKV 659


>gi|557567|gb|AAA64444.1| ribonucleotide reductase R1 subunit [Mycobacterium tuberculosis
           str. Erdman]
          Length = 723

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 165/680 (24%), Positives = 277/680 (40%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 69  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 128

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 129 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 185

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  G  I     +S GVIP +K
Sbjct: 186 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGGAIKNIENQSSGVIPIMK 245

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 246 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 305

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 306 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 362

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 363 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 420

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN-VIDINCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L       +  ++   ++ N+   A
Sbjct: 421 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVRHQTHIKSVPSIEQGNNDSHA 475

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 476 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 535

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 536 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 595

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + V+     G       ++ N+                
Sbjct: 596 PPTGSISYINHSTSSIHPIVSKVEVRKEGKIGRVYYPAPYMTND---------------- 639

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 640 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 684

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 685 VNKAQIYAWRKGIKTLYYIR 704


>gi|300780545|ref|ZP_07090400.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           genitalium ATCC 33030]
 gi|300533531|gb|EFK54591.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           genitalium ATCC 33030]
          Length = 720

 Score =  311 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 170/720 (23%), Positives = 288/720 (40%), Gaps = 68/720 (9%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270
           +Y  + A   L      +     ++       +       YF    E+            
Sbjct: 20  DYHALNALLNLYDENGHIQFDKDREAANQFFLQHVNQNTVYFHDLEEKMNYLVENKYYEP 79

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVA 325
           + +  +D  ++ +  K    F F +      Y  Y        +G R  E  +    RVA
Sbjct: 80  DVIKAYDWDFVKSTFKRAYAFKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFED---RVA 136

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           M         E+ A    + + +  F  +TPT  N+G     +L SCFL  + D++  I 
Sbjct: 137 MTALFLADGNEEIASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIG 196

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+  +  L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R
Sbjct: 197 RAINSSLQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGAR 256

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP
Sbjct: 257 QGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP 316

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+  +YG  F       +      + ++ +  I A   ++ +  + FE+G+P+I F
Sbjct: 317 ---YDVERVYGVPFADISVTEKYDEMVEDPRIRKTKIKARQFFQTIAEIQFESGYPYILF 373

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQF 616
           +D  N R+     G ++ SNLC+EI         N       + +  S NL +       
Sbjct: 374 EDHAN-RANPVKTGRINMSNLCSEILQVNSASVLNEDLTYDTIGHDISCNLGSLNIAMAM 432

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D D  + T+ TA+R L  V D  +  ++   ++ N    AIGLG M     L   HI Y 
Sbjct: 433 DSDNFSRTVETAIRGLTAVADKTSIDSVPSVREGNDASHAIGLGQMNLHGYLGREHIEYG 492

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLL 729
           S E ++  +     I +  + AS ++A E+   ++ F+ S +  G F     P D     
Sbjct: 493 SEEGLDFTNAYFATIMYECLKASHKIAVEKGQRFAGFEDSEYASGEFFDRYNPADFQPKT 552

Query: 730 AEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             V++          S   W++LK  V   G+ N    A+ PT +I+ I   + SI P  
Sbjct: 553 QRVKELFDGSSAQPPSAEEWEQLKADVARDGIYNRYLQAVPPTGSISYINNSTSSIHPIA 612

Query: 787 QNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + ++     G        + NE                 + G                
Sbjct: 613 SKIEIRKEGKIGRVYYPAPHMDNE-----------------NAG--------------YF 641

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             A+EI    +I++ +   K++DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 642 KDAYEIGFEKIIDTYAEATKYVDQGLSLTLFFKDTVTTRDINRAQIYAWRKGIKTLYYIR 701


>gi|300930528|ref|ZP_07145924.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
 gi|300461584|gb|EFK25077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 187-1]
          Length = 701

 Score =  311 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 171/706 (24%), Positives = 286/706 (40%), Gaps = 60/706 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRISMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++       
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTRR 606

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                                                + ++   ++  A+EI    +I++
Sbjct: 607 VYY------------------------------PAPFMTNENLALYQDAYEIGAEKIIDT 636

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 637 YAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|262341078|ref|YP_003283933.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272415|gb|ACY40323.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 570

 Score =  311 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 163/619 (26%), Positives = 252/619 (40%), Gaps = 94/619 (15%)

Query: 302 YDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            + Y   I G  +   E P   + R+A   A    + +    +F+N+      + STP +
Sbjct: 24  NELYLTTIKGGYLLDGETPFEAYKRLAKNAAKILKKPKI-EEKFFNIFWKGWLIPSTPVM 82

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   + D +Y I+    E A+L+K+ GG   D++ VR +G+ I    
Sbjct: 83  VNLGTEKGLPISCFSGRIGDSMYEIYRKNLEMAILSKHGGGTSYDFSLVRPIGSPIKNGT 142

Query: 419 -GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G S GVIPF+K  +   VA  QG  R+GAV  YL   H +  EFL +R+  GD  R+ H
Sbjct: 143 LGSSDGVIPFIKSYDSAIVASKQGRTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCH 202

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           +++    I D FM+ V +                                          
Sbjct: 203 NVHQGVIISDSFMEEVLK------------------------------------------ 220

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSS 594
           +     + W   L    +TG P++ FKD  N     + +++   +H SNLC+EI L +  
Sbjct: 221 KNGKERSFWINTLKERVKTGEPYLFFKDNANKNLPENWEKNGLKIHHSNLCSEIMLPTDE 280

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
             T VC L S+NL  +      +    A     AV         N   IE A +     R
Sbjct: 281 NHTLVCCLSSLNLYKYVEWKNTNTVFYAILFLDAVLQEFIDKGKNIQGIEDAVRFAEKSR 340

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           A+GLG +G+ S L    IP+ S ++  +       I   +  A+  LA+E G      G+
Sbjct: 341 ALGLGALGWHSYLQSNMIPFISVQSEILTHNIFRKIQLESQKATKYLAKEYGESEWNIGT 400

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                                                     G RN   MA+AP  + A 
Sbjct: 401 ------------------------------------------GRRNLTLMAMAPNRSSAK 418

Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           + G +SQ ++P   N+YV  +  G     N +L   L +       +   +    GS   
Sbjct: 419 LAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKMLIEIGYNLPEVWEQIANEKGSCLG 478

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQA 892
           +  + ++ K +     EI+ + LI  AS RQK+IDQ QS+NL +      K ++ ++ +A
Sbjct: 479 LTALSEEQKNVFRCFKEINQLELIRQASIRQKYIDQGQSINLSFHQNTPAKYINKVHLEA 538

Query: 893 WLMGLKTTYYLRSRSATSV 911
           W +GLK+ YY RS S    
Sbjct: 539 WKIGLKSLYYYRSESILRA 557


>gi|91778404|ref|YP_553612.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400]
 gi|91691064|gb|ABE34262.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400]
          Length = 861

 Score =  311 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 148/632 (23%), Positives = 261/632 (41%), Gaps = 80/632 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              L +L ++Y         +     F RVA G+A  E    + +VE  F + L      
Sbjct: 29  QFSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPPALRESVEALFVDNLRHGALG 84

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 85  AGRIMSAAGTGIAATLINCFVQPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNF 144

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 145 SAIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 204

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM+ V ++  W L    E S               +
Sbjct: 205 AKHSKG----RWNNFNVSVGVTDEFMRAVEEDQPWQLVHRAEPSPA---------QRAAD 251

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             RQ + G + V+ +  A  +W +++   ++   P I F    N  +  + V  + ++N 
Sbjct: 252 DVRQREDG-LWVYSERPAREIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 310

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL                 FD+D LA   RT VR LDNV
Sbjct: 311 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNV 366

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + +  + +   R IG+G  G    L +L + Y S E  + A    + +   A 
Sbjct: 367 LDVTLWPLPQQYEESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVGIAQLMRDEAY 426

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA+  F  + +                   L     +    +++K+ ++ 
Sbjct: 427 RASVELARERGAFPLFDAARY-------------------LETGTFASRLPEDIKQAIRR 467

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y +             ++ +  + 
Sbjct: 468 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGSRE 516

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E     L    G  G++ R+PD       +A E+     ++  +  Q ++D + S 
Sbjct: 517 SFDVEDYAYRLYRELG--GDVNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISK 570

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + +  +   +  + +Y  AW  GLK     R
Sbjct: 571 TVNVPADYPFEAFESLYLDAWKNGLKGLATYR 602


>gi|74313246|ref|YP_311665.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei
           Ss046]
 gi|187730558|ref|YP_001881573.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii
           CDC 3083-94]
 gi|73856723|gb|AAZ89430.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Shigella
           sonnei Ss046]
 gi|187427550|gb|ACD06824.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           boydii CDC 3083-94]
 gi|320173469|gb|EFW48668.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella
           dysenteriae CDC 74-1112]
 gi|323167151|gb|EFZ52869.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           sonnei 53G]
          Length = 714

 Score =  311 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   + + E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|5230835|gb|AAD41036.1|AF112535_3 ribonucleotide reductase alpha-chain [Corynebacterium glutamicum]
 gi|21325302|dbj|BAB99923.1| Ribonucleotide reductase alpha subunit [Corynebacterium glutamicum
           ATCC 13032]
          Length = 707

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 162/679 (23%), Positives = 272/679 (40%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +E      ++ +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 54  EKIDYLVENKYYDPIVLDKYDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGR 113

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA         A    + + S  F  +TPT  NSG     +  S
Sbjct: 114 RYLERFEDRVCMVALTLA---DGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVS 170

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+
Sbjct: 171 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKL 230

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 231 LEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 290

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +   +N    LFSP    D+  +YGK F              + ++ +  I+A   ++ +
Sbjct: 291 ELAKRNDDMYLFSP---YDVERIYGKPFADVSITEHYDEMVDDDRIRKTKINARQFFQTL 347

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I ++D  N        G +  SNLC+EI               +   E 
Sbjct: 348 AEIQFESGYPYIMYEDTVNA--SNPIEGRITHSNLCSEILQVSTPSEFNDDLTYAEVGED 405

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      TI TA+R L  V +  +  ++   +K N    AI
Sbjct: 406 ISCNLGSLNVAMAM-----DSPNFEKTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAI 460

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M         H+ Y S EA++  +     + +  + AS ++A ER   + +F+ S 
Sbjct: 461 GLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSK 520

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +  D            + E+  +  ++  +   W  LK  V   G+ N N  A+ 
Sbjct: 521 YATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVP 580

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G        + N+                 
Sbjct: 581 PTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND----------------- 623

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           +    A+EI    +I++ +   K++DQ  SL L+  +  + + +
Sbjct: 624 --------------NLEYFEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDI 669

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 670 NRAQIYAWRKGIKTLYYIR 688


>gi|218690803|ref|YP_002399015.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli ED1a]
 gi|218428367|emb|CAR09296.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli ED1a]
          Length = 714

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 179/732 (24%), Positives = 297/732 (40%), Gaps = 73/732 (9%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                + EG     +        ++ L             +LG    Y  Y L   +G R
Sbjct: 62  RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
               + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SCF
Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+    
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +NA   LFSP    D+  +YGK F   A      +    E    + ++A   ++++  
Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLAE 356

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604
           + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  S
Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    +  D    A T+ TAVR L  V D+ + H++   +  N    AIGLG M  
Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNL 474

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G + 
Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534

Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                           EL         +R  W +L+  V   G+ N N  A+ PT +I+ 
Sbjct: 535 SQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594

Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++    +G       F+ N                         
Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                 +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 684 WRKGIKTLYYIR 695


>gi|120403036|ref|YP_952865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955854|gb|ABM12859.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 722

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 165/680 (24%), Positives = 286/680 (42%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +++    R + +      +  L +    ++     ++G    Y  Y L   +G
Sbjct: 68  DEKLDYLVQKEYYEREVLDQYSRNFVKELLDRAYAKKFRFPTFVGAFKYYTSYTLKTFDG 127

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A +  + +    F  +TPT  NSG +   +  
Sbjct: 128 KRYLERFEDRVVMVALTLASGD---TTLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEPV 184

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 185 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 244

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 304

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 305 FELAKKNEDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 361

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597
           +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI   S+  E            
Sbjct: 362 LAELQFESGYPYIMYEDTVNRANPI--DGKITHSNLCSEILQVSTPSEFNDDLSYKKIGK 419

Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 420 DISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 474

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 475 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYTVLYHALRASNRIAIERGTAFKGFEKS 534

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W +LK+ V+  G+ N N  A+
Sbjct: 535 KYASGEFFDKYTEQVWEPKTDKVRQLFTDAGIRIPNQDDWKQLKESVQQHGIYNQNLQAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N                 
Sbjct: 595 PPTGSISYINHSTSSIHPIASKVEIRKEGKIGRVYYPAPYMTN----------------- 637

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +  + +  A+EI    +I++ +   + +DQ  SL L+  +  + ++
Sbjct: 638 --------------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRE 683

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 684 VNKAQIYAWRKGIKTLYYIR 703


>gi|148259205|ref|YP_001233332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidiphilium cryptum JF-5]
 gi|146400886|gb|ABQ29413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidiphilium cryptum JF-5]
          Length = 761

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 153/639 (23%), Positives = 255/639 (39%), Gaps = 85/639 (13%)

Query: 295 YLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
            +  QI   +Y L    G  ++   +  + RVA  LA  E E       FY  L  F F+
Sbjct: 20  PISAQIWDAKYRLKDEAGEPVDRTVEDTWRRVARALAETEREPSSWEAPFYEALRDFRFV 79

Query: 353 CSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
            +   +  +GT     L +CF+   + DDL  IF  L+E A+  +  GG+G D++ +R  
Sbjct: 80  PAGRIISGAGTARRVTLFNCFVMGDIEDDLGRIFAHLREAALTMQQGGGIGYDFSSIRPK 139

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA + G    + G + F+ V +     +   G R+GA+ A +   H D+E F+  ++   
Sbjct: 140 GAAVRGVGADASGPLSFMDVWDSMCRTIMSAGARRGAMMATMRCDHPDIEAFIAAKR--- 196

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +  R  + N +  + D FM+ V  +A W L                             
Sbjct: 197 -EPGRLRNFNLSVLVTDDFMRAVEADAAWDLVF--------------------------- 228

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             E KV+R + A ALW  +    ++   P + F D  N R+   +   +H++N C E  L
Sbjct: 229 --EGKVYRTLQARALWEAITRATYDYAEPGVIFIDRINKRNNLYYCETIHATNPCGEQPL 286

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                    C LGSINL     +        D  +LA  +  AVR+LD+ ID +   +E 
Sbjct: 287 PPY----GACLLGSINLARLVRDPFGSGARIDEAELAELVTIAVRMLDDTIDASGFPLEA 342

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            ++     R +GLG+ G   AL +  + Y +PEA   A +    I   A  AS  LA E+
Sbjct: 343 QREEAVAKRRVGLGMTGLADALMMCGLRYGTPEAAARAGDWARQIERAAYLASAALAAEK 402

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA+  +  + +  G                      + L  D ++  +   G+RN+   +
Sbjct: 403 GAFPLYDAAQYLAGE-------------------TIAGLDED-VRAAIAAHGIRNALLTS 442

Query: 766 IAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           +APT TI+ +   VS  ++P +   Y +             L  +  +R+  +E     L
Sbjct: 443 VAPTGTISLLSDNVSSGVEPVFALAYTRKV-----------LQRDGSRRE--EEVTDYAL 489

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
           +      G    +P        TA E+ P   +   +  Q+ +D A S  + +  +   +
Sbjct: 490 RLFRAKFGEGAPLPAH----FVTAQELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFE 545

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
               +Y  A+  G K     R  + T          D K
Sbjct: 546 AFQEVYLDAYRSGCKGCTTYRPNAVTGSVLEVAPPADAK 584


>gi|299537050|ref|ZP_07050353.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298727291|gb|EFI67863.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 697

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 167/694 (24%), Positives = 303/694 (43%), Gaps = 73/694 (10%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQI- 300
             +  ++  Y       I   V      ++ +D +++ ++    K   D+ F +      
Sbjct: 35  LEYVNVRLRYFIDIEEKIRYLVDEGYYEKAFIDMYEMEFIKKLYKKAYDYNFRFPSFMSA 94

Query: 301 --LYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              YD Y +        +E  +   + +A+ LA   T   +R+VE         +  +TP
Sbjct: 95  SKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTALAERSVE----AMMEAYQPATP 150

Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  NSG +   +L SCF  ++ D +  I   +     L++  GG+G + T +R LG  I 
Sbjct: 151 TALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIK 210

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               ++ GVIP  K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R
Sbjct: 211 EILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIR 270

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533
              ++T   IP +F + + ++    LFSP    D+   YGK        + Y    D  +
Sbjct: 271 LATLSTGIIIPSIFFELMKRDKDIVLFSP---YDIFKEYGKRMSEISISDMYYELLDNPK 327

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE------ 587
           I+  ++++A  L+ ++    FE+G+P+  F D  N   P +++G V  SNLCTE      
Sbjct: 328 IRKIKRLNARKLYTEVKKAQFESGYPFEIFDDNVNKVHPLKNIGRVKMSNLCTEILQVQE 387

Query: 588 ------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640
                     +       CNLGSI++ A             + + TA+ +L NV  + + 
Sbjct: 388 TSIITDQDQPNDYGLDVSCNLGSIDIHAASKV-----KDFGTLVDTAMHLLTNVSQMTHI 442

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +    K+N    ++GLG M     L    I Y S E+++  D  ME ++++++ +S+E
Sbjct: 443 KNVPSVAKANQLMHSVGLGCMNLHGHLVTEGILYGSRESIDFMDHFMEAMNYYSLKSSME 502

Query: 701 LAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRV 753
           +A+E+   +  F+ S +  G +    I    E    +       +   +   W+ LK+ V
Sbjct: 503 MAKEKAATFYRFEDSDYASGSYFDQYINKAEEELSPVVLKALGNIPIITNKMWETLKQDV 562

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
              G+ +S  +AIAPT +I+ I   + SI P  + + V+             L N+    
Sbjct: 563 MQYGLFHSYRLAIAPTGSISYIRSCTASIAPCTERVEVRDYADSRTIYPMPHLTNDNSH- 621

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                         ++  A++++P  LI+  +  QK +DQ  S+
Sbjct: 622 ------------------------------LYVEAYDVNPYDLIDLYAASQKHVDQGISM 651

Query: 874 NLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
            LY+ +  + ++L  +Y  AW+ G+K+ YY+R R
Sbjct: 652 TLYVTDNWTTEQLAKVYIYAWIKGIKSVYYVRQR 685


>gi|188533085|ref|YP_001906882.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188028127|emb|CAO95984.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 693

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 166/668 (24%), Positives = 275/668 (41%), Gaps = 60/668 (8%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317
            + EG     +  +     +  L  +    R     +LG    Y  Y L   +G R    
Sbjct: 45  LVAEGYYEADVLNAYPFEFVCSLFAEATARRFRFQTFLGAWKFYTSYTLKTFDGKRY--L 102

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376
           + F  RV M         +  A+   + + S  F  +TPT  N G +   +L SCFL  +
Sbjct: 103 EGFTERVCMVALTLAKGDQPLALALTDEILSGRFQPATPTFLNCGKQQRGELVSCFLLRI 162

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D   
Sbjct: 163 EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFS 222

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N
Sbjct: 223 YANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDN 282

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFE 555
               LFSP    D+  +YG  F     + +      + ++ R  I+    ++ +  + FE
Sbjct: 283 QQMALFSP---YDVERIYGLPFADISISEKYHEMLNDARIRRTFINPREFFQTLAEIQFE 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608
           +G+P+I F+D  N  +P    G ++ SNLC+EI   +S  E              S NL 
Sbjct: 340 SGYPYIMFEDTVNRANPVH--GRINMSNLCSEILQVNSPTEYHDDLSYRRIGKDISCNLG 397

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +    +  D    A T+  AVR L  V D  + H++   ++ N    AIGLG M     L
Sbjct: 398 SLNIAHAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYL 457

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726
               I Y S   ++  +     +++HA+  S +LA+ER   +S F  S +  G +    +
Sbjct: 458 AREGIQYGSEAGLDFTNIYFYTVTYHALRTSNQLARERSTTFSGFAQSRYASGEYFNPYL 517

Query: 727 GLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
               + R            +   +R  W  LK  V   G+ N N  AI PT +I+ I   
Sbjct: 518 EQSWQPRTSQVAALFANAGIAIPTRQQWQTLKDAVMQYGLYNQNLQAIPPTGSISYINHA 577

Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++    +G       F+ N+                            
Sbjct: 578 TSSIHPIVSRIEIRKEGKTGRVYYPAPFMNND---------------------------- 609

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896
               +  +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G
Sbjct: 610 ---NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKG 666

Query: 897 LKTTYYLR 904
           +KT YY+R
Sbjct: 667 IKTLYYIR 674


>gi|300815922|ref|ZP_07096146.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
 gi|300531851|gb|EFK52913.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 107-1]
          Length = 701

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +    +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|191171419|ref|ZP_03032968.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
 gi|190908353|gb|EDV67943.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli F11]
          Length = 714

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 179/732 (24%), Positives = 297/732 (40%), Gaps = 73/732 (9%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                + EG     +        ++ L             +LG    Y  Y L   +G R
Sbjct: 62  RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
               + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SCF
Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+    
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +NA   LFSP    D+  +YGK F   A      +    E    + ++A   ++++  
Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLAE 356

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604
           + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  S
Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    +  D    A T+ TAVR L  V D+ + H++   +  N    AIGLG M  
Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNL 474

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G + 
Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534

Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                           EL         +R  W +L+  V   G+ N N  A+ PT +I+ 
Sbjct: 535 SQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594

Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++    +G       F+ N                         
Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                 +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 684 WRKGIKTLYYIR 695


>gi|301300445|ref|ZP_07206645.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851942|gb|EFK79626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 723

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 286/712 (40%), Gaps = 76/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +  K    +   +  E     I+                +  L + LK E 
Sbjct: 34  KEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L  
Sbjct: 92  DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150

Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           RG GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E    
Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+E
Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386

Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I          + +E  V     S NL +    N         ++    R L  V D  +
Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  + L    I Y SPEA+E        +++  + AS 
Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750
           ++A+ER   + +F+ S +  G +    +          + E+ D + +   ++  W  LK
Sbjct: 507 KIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809
           + V   G+ + N +A+AP  +I+ I   + S+ P    +  +     G       +L N 
Sbjct: 565 ENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                         +    + +A++ D   +I++ +  Q+ +DQ
Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653

Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++                   + + L  +   A   G+K+ YY+R+
Sbjct: 654 GMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|42522732|ref|NP_968112.1| ribonucleotide-diphosphate reductase alpha subunit [Bdellovibrio
           bacteriovorus HD100]
 gi|81617878|sp|Q6MNP6|NRDJ_BDEBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|39573928|emb|CAE79105.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 764

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 133/604 (22%), Positives = 246/604 (40%), Gaps = 42/604 (6%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
              PQ S+CF+ +V D +  IF   +  A L KY  G G++++ +R       G+ GKS 
Sbjct: 164 YERPQCSACFIQSVDDSIESIFDLAKTEAKLFKYGSGTGSNFSKIRSK-YEATGSGGKSS 222

Query: 423 GVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G+I FL+V +  A A+  G   R+ A    ++  H +V +F+D +     + ++ H +  
Sbjct: 223 GLISFLEVLDKGAGAIKSGGTTRRAAKMVVVDIDHPEVLDFIDWKMR---EEQKAHLLIA 279

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A    D            +  + +    + D + K  E   E   +   R   KV R+I 
Sbjct: 280 AGLSADF---EGEAYRTVSGQNANNSVRVSDAFMKAVEQ--ERPWKLKARLTGKVLREIP 334

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  +W ++    +    P I F D  N         ++HSSN C+E        + + CN
Sbjct: 335 AGEVWNRITRAAWMCADPGIQFHDTINKWHTCPETDIIHSSNPCSEYMF----LDDSACN 390

Query: 602 LGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L SINL+        FD++    T RT     + ++D + +  ++  +++H +R +GLG 
Sbjct: 391 LASINLVKFLNDTGDFDFESFIHTARTLFVAQEILVDYSSYPTQRVAQNSHDYRPLGLGF 450

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG---SLWD 717
               S L    + Y S E    A      +S  A   S E+A+ +G ++ ++    S+  
Sbjct: 451 ANLGSLLMRKGVAYDSDEGRAWAGALTSLMSGVAYLTSSEMARAKGPFAGYRKNSKSMLK 510

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                  ++  +A       +++  R  W  +    +  G RN+    IAPT TI  +  
Sbjct: 511 VMKMHERALNQVAWKMLPAGIDKAVRNLWKGVLYNGEKYGYRNAQATVIAPTGTIGLLMD 570

Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833
             +  I+P +  + + K    G+  +VN  +   L     +++   + LKY   + S+  
Sbjct: 571 CDTTGIEPDFSLIKFKKLVGGGEIQIVNQSVDAALASLQYFEDERQAILKYVEENNSVVG 630

Query: 834 IERIPDDLKKIHATAFEI------DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
             ++  +   +  TA  +       P   ++  +  Q +I  A S  + +    + + + 
Sbjct: 631 APQMHPEDLPVFDTATAMPGQRVLSPESHVKMMAAVQPFISGAISKTVNMPSTATEEDIS 690

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
            IY  AW +G+K     R  S  S               + + +       +G+P+    
Sbjct: 691 RIYFLAWKLGVKAVAVYRDGSKQS-------------QPLNLKEKPKVVEEVGVPNFTMK 737

Query: 947 DTEC 950
             EC
Sbjct: 738 CPEC 741


>gi|117624911|ref|YP_853851.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli APEC O1]
 gi|115514035|gb|ABJ02110.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli APEC O1]
 gi|315284935|gb|EFU44380.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 110-3]
          Length = 701

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 171/673 (25%), Positives = 281/673 (41%), Gaps = 60/673 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           +     + EG     +        ++ L             +LG    Y  Y L   +G 
Sbjct: 48  QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           R    + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SC
Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+   
Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550
              +NA   LFSP    D+  +YGK F   A   +  +    E    + ++A   ++++ 
Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISEHYDELVADERIRKKYLNARDFFQRLA 342

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603
            + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  
Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    +  D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M 
Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 460

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +
Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520

Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                            EL         +R  W +L+  V   G+ N N  A+ PT +I+
Sbjct: 521 FSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580

Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++    +G       F+ N                        
Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     
Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 670 AWRKGIKTLYYIR 682


>gi|193071023|ref|ZP_03051951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|218696272|ref|YP_002403939.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 55989]
 gi|192955681|gb|EDV86156.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli E110019]
 gi|218353004|emb|CAU98820.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli 55989]
          Length = 714

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +    +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|281179682|dbj|BAI56012.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia
           coli SE15]
          Length = 714

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 287/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A      +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISERYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|324005771|gb|EGB74990.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 57-2]
          Length = 701

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 171/673 (25%), Positives = 281/673 (41%), Gaps = 60/673 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           +     + EG     +        ++ L             +LG    Y  Y L   +G 
Sbjct: 48  QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           R    + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SC
Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+   
Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550
              +NA   LFSP    D+  +YGK F   A   +  +    E    + ++A   ++++ 
Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISEHYDELVADERIRKKYLNARDFFQRLA 342

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603
            + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  
Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    +  D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M 
Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 460

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +
Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520

Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                            EL         +R  W +L+  V   G+ N N  A+ PT +I+
Sbjct: 521 FSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580

Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++    +G       F+ N                        
Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     
Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 670 AWRKGIKTLYYIR 682


>gi|254000336|ref|YP_003052399.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. SIP3-4]
 gi|313202290|ref|YP_004040948.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. MP688]
 gi|253987015|gb|ACT51872.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. SIP3-4]
 gi|312441606|gb|ADQ85712.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylovorus sp. MP688]
          Length = 714

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 142/705 (20%), Positives = 267/705 (37%), Gaps = 66/705 (9%)

Query: 293 FEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLS 347
            + + L I   +Y L               + RVA  LA  E    ++      F   L 
Sbjct: 17  MQPVSLDIWDKKYRLKTKQGDHIDADMDDTYKRVARALADAEETDAKRSFWYERFLWALR 76

Query: 348 SFHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGN 402
                 +     N+G +  +      +C ++ +  D + GI   + E  +  K   G+G 
Sbjct: 77  RGAI-PAGRITSNAGAQEHKPATSTINCTVSGIIEDSMDGILEKVHEAGLTLKAGCGIGY 135

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           +++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV +F
Sbjct: 136 EFSTLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPDVTDF 195

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLHDLYG 515
           +  ++    +  R    N +  I   FM+ V  +A W L  P        +  +L D   
Sbjct: 196 IKAKR----EAGRLRQFNLSTLITKEFMEAVKADAEWKLAFPVTEKEANQDSLNLEDPTQ 251

Query: 516 KEFEIAYENYERQADRGEIKV----FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
             +       +      + KV    ++ I A  LW  +++  ++   P     D  N  +
Sbjct: 252 VVWREWPVKNKYLTRESDGKVACRVYKTIKAQRLWDVIMSSTYDFAEPGFILIDRVNEMN 311

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIR 626
                  + ++N C E  L         C LGS+NL             FD+++    + 
Sbjct: 312 NNWFCENIRATNPCGEQPLPPY----GACLLGSVNLTKFVREPFTDKAWFDWEEYREVVA 367

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           T  R+LDNV+++N   + + +      R  G+G +G  S L +L + Y    ++   +E 
Sbjct: 368 TFTRMLDNVVEVNGLPLPQQQAEIMRKRRHGMGYLGLGSTLTMLKMKYGDDASLTFTEEV 427

Query: 687 MEFISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAMN 739
            + ++       VELA+E+G               L  +     D I L  +V+ ++ M 
Sbjct: 428 TKIMAEVGWQVGVELAEEKGPAPIMDEEFVVTADLLAKRPEMVKDGIKLGDKVKGKVLMG 487

Query: 740 RTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
             SR      D+L+K++   G+R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 488 LYSRYMQQFPDKLRKQIAKNGVRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYARNV 547

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD-LKKIHATAFEIDP 853
           +               ++ D++   +++  +  + S       P++ L +    +  I  
Sbjct: 548 I--------REGKKSKEKVDVFSYELLAYRELINASAMPFSDKPEEQLPEYFMDSSTISA 599

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT--- 909
              ++  +  QKWID + S  + +  +        IY  A+  GLK     R        
Sbjct: 600 KAHVDIQAAAQKWIDSSISKTINVPTDYDFGDFKDIYLYAYEKGLKGCTTFRFNPEAFQG 659

Query: 910 ------SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                  +E +T K      + V V       +   I S+     
Sbjct: 660 VLVTEKDLENTTYKFTLDDGSVVEVKGNEEIEYDGEIHSAANLYD 704


>gi|144575329|gb|AAZ53595.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae 7448]
          Length = 720

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 170/737 (23%), Positives = 297/737 (40%), Gaps = 99/737 (13%)

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            +    + E     ++       +       +L  L         F   ++G    Y  Y
Sbjct: 54  FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 113

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L  N + +   + F  RV +          ++A +    +    F  +TPT  N+G  +
Sbjct: 114 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 172

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +  SC+L  V D++  I  A+  +  L+K  GG+    + +R  GA I     ++ GV
Sbjct: 173 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 232

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 233 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 292

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542
           IP++  +    N    LFS   V D+  +Y K F      ENY +     EIK    ISA
Sbjct: 293 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQMLANPEIKKTF-ISA 348

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597
             L++ +  + FE+G+P+I F+D  N      H   V  SNLC+EIT  S+         
Sbjct: 349 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSRFLPDLS 406

Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGS+N+     +   D++++      A+ V+    D++       +K N
Sbjct: 407 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 463

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + + AIGLG M     L    I Y S EA++  +     ++F A  AS +LA++ G +S 
Sbjct: 464 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 523

Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           F+ + +  G +      +             E+  +  +   ++  W  L +++K  G+ 
Sbjct: 524 FEKTKFASGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIA 583

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS+ MAIAPT +I+ +   + S+ P    + ++         V S+              
Sbjct: 584 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 629

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                           ++     K +   A+E+ P+ +I   S  QK +DQA S+ L++ 
Sbjct: 630 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 673

Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +  + + L+  Y  A+    K+ YY+R R                               
Sbjct: 674 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 702

Query: 938 LGIPSSCTSDTECEVCQ 954
             +     +   C+ CQ
Sbjct: 703 QDVLEDSENYETCQSCQ 719


>gi|90407599|ref|ZP_01215780.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas
           sp. CNPT3]
 gi|90311302|gb|EAS39406.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas
           sp. CNPT3]
          Length = 557

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 157/598 (26%), Positives = 257/598 (42%), Gaps = 118/598 (19%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  + +FY  + +  +  S+P   N G       SCF +++ DD+  I     E  M++K
Sbjct: 41  EGFSDKFYGYMEAGFYSLSSPVWSNFGKDSGLPVSCFGSSITDDIGNILFTEAEVGMMSK 100

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG    +  +R  GA I   NG S G   F+++       V+QG  R+G   AYL   
Sbjct: 101 LGGGTSAYFGHLRHRGATIKN-NGVSSGAPHFMQLFETMVDVVSQGSVRRGRFAAYLPIE 159

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D  EFLD+      +     ++     + D +++++                      
Sbjct: 160 HKDANEFLDIG----SEGNVIQNLTHGITVTDAWLQKMI--------------------- 194

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS---P 572
                            E    +++    LW K++    E G+P+I F D  N ++    
Sbjct: 195 -----------------EGDKEKRV----LWAKVIQRRNEMGYPYILFSDNANNQTVDTY 233

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           ++H   +++SNLCTEI L +  + + VC L SINLL +      D       + T +  L
Sbjct: 234 KKHDLKINASNLCTEIMLPAHDKWSFVCVLSSINLLHYEKWKDTD------AVETLIYFL 287

Query: 633 DNVIDINCHTIEKAKKSN------------------HTHRAIGLGLMGFQSALHLLHIPY 674
           D V+      +E+ + SN                   ++RA+G+G++G+ S L    +P+
Sbjct: 288 DAVVTEFLDKLEEYRDSNERADQLVFLFMEKAYNFCKSNRALGMGVLGWHSLLQQEMLPW 347

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
              +A ++  E  + I   +  AS  LA + G  S  +G                     
Sbjct: 348 EGRDAAKLNLEIFKLIKQKSYQASASLADKFGEPSILEG--------------------- 386

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793
                                 G RN+   AIAPT + A I G VSQ I+P + N YVK 
Sbjct: 387 ---------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNCYVKD 425

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                 T+ N FL   L+++    + +  D++ HDGS+ +++ + ++ KK+  T  EID 
Sbjct: 426 ISKIKTTIKNPFLEKLLEEKGFNTKQVWLDIRDHDGSVQHLDFLTEEEKKVFKTFPEIDQ 485

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           M +I+ AS RQ +IDQ QSLNL +  +   K ++ +Y  AW MG+K+ YY  S +A  
Sbjct: 486 MSIIDQASTRQTYIDQGQSLNLMIHPDTPVKDINQLYLSAWKMGIKSLYYQHSMNAAQ 543


>gi|315502612|ref|YP_004081499.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
 gi|315409231|gb|ADU07348.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
          Length = 964

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 121/619 (19%), Positives = 223/619 (36%), Gaps = 28/619 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 116 GYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILD 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + +   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 176 WYKEEGRIFQGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF+  +    D  R   D      +    +  V           
Sbjct: 235 RAAKMVILDVDHPDIEEFVATKAREEDKIRALRDAGFDMDLGGADIVSVQYQNANNSVRV 294

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G  F++          R + +    I A  L+  +    +E   P + + 
Sbjct: 295 SDEFMTAVENGGGFDLR--------GRLDGQTIETIDAKKLFHTISQAAWECADPGLQYD 346

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
           D  N        G + +SN C+E        + + CNL S+NL+     +  F+ +K   
Sbjct: 347 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVK 402

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I       EK  ++   +R +G+G     + L    +PY S +  E++
Sbjct: 403 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGREVS 462

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                 ++  A   S ELA   G Y  +  +                 ++       A+ 
Sbjct: 463 AAITSLMTGTAYRRSAELAGIVGPYDGYARNAEPHKRVMRKHAAANDAIKPTGTVATAVQ 522

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           R +   W    K     G RNS    +APT TI  +    +  ++P    + + K    G
Sbjct: 523 REATKQWTLGNKLGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 582

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L+     +E + + +      G + +   +  +   +   A     I 
Sbjct: 583 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 642

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R       
Sbjct: 643 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 702

Query: 912 EKSTLKGVDGKLNAVPVTD 930
             S  K             
Sbjct: 703 PLSAAKPNKATAETQAPAA 721


>gi|72162548|ref|YP_290205.1| vitamin B12-dependent ribonucleotide reductase [Thermobifida fusca
           YX]
 gi|71916280|gb|AAZ56182.1| ribonucleotide reductase large subunit [Thermobifida fusca YX]
          Length = 934

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 126/623 (20%), Positives = 228/623 (36%), Gaps = 66/623 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFG 385
           G    + + E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 112 GYFASDEDAEIFDHELKYALVHQMFSFNSPVWFNVGTSSKAQVSACFILSVDDTMESILD 171

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 172 WYKEEGLIFKGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 230

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+EEF++ +       R                   +  + N +  +
Sbjct: 231 RAAKMVVLDVDHPDIEEFIECKAREERKIRVLRDAGFDVDLGGADIISVQYQNANNSVRV 290

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V  +  +                               R   +V  K+ A  L
Sbjct: 291 SDKFMRAVENDEDF---------------------------DLIARTTGEVISKVRARDL 323

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +RKM    +E   P I + D  N        G + +SN C+E        + + CNL SI
Sbjct: 324 FRKMAQAAWECADPGIQYDDTINDWHTTPESGRITASNPCSEYVH----LDNSSCNLASI 379

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+     +  F  ++        +  +D  I       EK  ++   +R +G+G     
Sbjct: 380 NLMKFLDEDGSFRVEEFERLTELVITAMDISICFADFPTEKIAETTRAYRQLGIGYTNLG 439

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L      Y S     +A      ++  A   S ELA   GAY  +  +          
Sbjct: 440 ALLMATGHAYDSDGGRSVAAAITSLMTAAAYRRSAELAGVVGAYEGYAKNAEAHKRVMRK 499

Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  +R     E  ++  +   W E  +  +  G RN+    +APT TI+ +    +
Sbjct: 500 HAAANDALRPVGQLEKPIHDAATRAWKECLELGERHGWRNAQASLLAPTGTISFMLDCDT 559

Query: 780 QSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836
             I+P +  + +K     G   +VN  +   L+     ++ + + + Y    G + +   
Sbjct: 560 TGIEPDFSLVKIKKLVGGGSMKIVNQGIPRALRTLGYNEDQIQAIVDYVAEHGHVVDAPE 619

Query: 837 IPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892
           +  +  ++   A     I PM  +E  +  Q ++  A S  + L  E + +  + +Y + 
Sbjct: 620 LRPEHYEVFDCATGKRYIRPMGHVEMMAAVQPFLSGAISKTVNLPEEATVEDFERLYFEG 679

Query: 893 WLMGLKTTYYLRSRSATSVEKST 915
           W  GLK     R         ST
Sbjct: 680 WKKGLKALAVYRDNCKVGQPLST 702


>gi|225021559|ref|ZP_03710751.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945550|gb|EEG26759.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 719

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 168/670 (25%), Positives = 279/670 (41%), Gaps = 64/670 (9%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EM 316
            +E       +        +  L       +     +LG    Y  Y L   +G+R  E 
Sbjct: 71  LVENKYYDPEVLARYDFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLER 130

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
            +    RV M          + A    + + +  F  +TPT  N G     +  SCFL  
Sbjct: 131 FED---RVCMVALGLADGDTELARHLVDEIMTGRFQPATPTFLNMGKAQRGEPVSCFLLR 187

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+ 
Sbjct: 188 IEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSF 247

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 248 SYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 307

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N+   LFSP +V     +YGK F      E+Y+   +   I+  +KI+A   ++ +  + 
Sbjct: 308 NSDMYLFSPYDVQ---RVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQ 363

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSIN 606
           FE+G+P+I F+D  N  +P    G V+ SNLC+EI   +S                 S N
Sbjct: 364 FESGYPYIMFEDVVNRANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCN 421

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L +       D    A T+ TA+R L  V +  + H++   +K N    AIGLG M    
Sbjct: 422 LGSLNIAMAMDSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHG 481

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF--- 721
            L    I Y S EA++  +     + +  + AS +LA+ER  ++  F+ S +  G +   
Sbjct: 482 YLGRERIHYGSEEALDFTNAYFAAVLYQCLRASNKLARERGQSFGGFEDSEYASGAYFDR 541

Query: 722 --PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             P D +   A+V++    +     +   W+ LK  V T G+ N N  A+ PT +I+ I 
Sbjct: 542 FSPADFVPKTAKVQELFDASSITVPTAAEWEALKSDVMTHGLYNRNLQAVPPTGSISYIN 601

Query: 777 GVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             + SI P    + ++     G        + N                           
Sbjct: 602 NSTSSIHPIASRIEIRKEGKIGRVYYPAPHMDNT-------------------------- 635

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
                  +    A+EI    +I++ +   K++DQ  SL L+  +  + + ++     AW 
Sbjct: 636 -----NLEYFQDAYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWR 690

Query: 895 MGLKTTYYLR 904
            G+KT YY+R
Sbjct: 691 KGIKTLYYIR 700


>gi|218555223|ref|YP_002388136.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI1]
 gi|218361991|emb|CAQ99597.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli IAI1]
          Length = 714

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +    +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|121602719|ref|YP_988675.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           bacilliformis KC583]
 gi|120614896|gb|ABM45497.1| ribonucleoside-diphosphate reductase, alpha subunit [Bartonella
           bacilliformis KC583]
          Length = 716

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 173/685 (25%), Positives = 286/685 (41%), Gaps = 64/685 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     IEEG   + L E      +  L       +     +LG    Y  Y L   +G
Sbjct: 62  KEKINYLIEEGYYEKALFELYDFSFIKRLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDG 121

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
           +R  E  +    RV +         +  A    + + +  F  +TPT  N+G +   +L 
Sbjct: 122 TRYLERYED---RVCLVALYLAQGNKDFAESCVDEIMTGRFQPATPTFLNAGKKQRGELV 178

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K
Sbjct: 179 SCFLLRVEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMK 238

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 239 LLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDIT 298

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRK 548
            +    N    LFSP    D+  + GK F         ++     K+  +KISA   ++ 
Sbjct: 299 FELARNNEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNPKIRKKKISARVFFQT 355

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------ 602
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   + + E            
Sbjct: 356 LAEIQFESGYPYILFEDTANRANPV--AGRINMSNLCSEILQINEASELETDLGYRTVGS 413

Query: 603 -GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D      T+ TAVR L  V D+ N   +    K N    AIGLG 
Sbjct: 414 DISCNLGSMNIAKAMDSSDFGRTVETAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     +++HA+ AS  +A+E +  ++ F+ S +  G
Sbjct: 474 MNLHGFLAREKIYYGSPEAIDFTNIYFYTVTYHALRASNLIARERQEKFAGFEKSAYADG 533

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    I    + +  L     +R          W +LK+ +   G+ N N  A+ PT +
Sbjct: 534 CFFEKYIKREWKPQFLLVQEIFARNNILIPTQGDWKKLKELIAKYGLYNRNLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       ++ N                      
Sbjct: 594 ISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT--------------------- 632

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                         +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 633 ----------NLNFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQ 682

Query: 890 RQAWLMGLKTTYY--LRSRSATSVE 912
             AW  G+K+ YY  LR ++ +  E
Sbjct: 683 IYAWKKGIKSIYYIRLRQKALSGTE 707


>gi|300990602|ref|ZP_07179252.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
 gi|300305719|gb|EFJ60239.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 200-1]
          Length = 701

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 172/673 (25%), Positives = 281/673 (41%), Gaps = 60/673 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           +     + EG     +        ++ L             +LG    Y  Y L   +G 
Sbjct: 48  QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           R    + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SC
Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+   
Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550
              +NA   LFSP    D+  +YGK F   A      +    E    + ++A   ++++ 
Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLA 342

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603
            + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  
Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    +  D    A T+ TAVR L  V D+ + H++   +  N    AIGLG M 
Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMN 460

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +
Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520

Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                            EL         +R  W +L+  V   G+ N N  A+ PT +I+
Sbjct: 521 FSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580

Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++    +G       F+ N                        
Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     
Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 670 AWRKGIKTLYYIR 682


>gi|300214874|gb|ADJ79290.1| Ribonucleoside-diphosphate reductase [Lactobacillus salivarius CECT
           5713]
          Length = 723

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 286/712 (40%), Gaps = 76/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +  K    +   +  E     I+                +  L + LK E 
Sbjct: 34  KEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L  
Sbjct: 92  DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150

Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           RG GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E    
Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+E
Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386

Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I          + +E  V     S NL +    N         ++    R L  V D  +
Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  + L    I Y SPEA+E        +++  + AS 
Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLARNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750
           ++A+ER   + +F+ S +  G +    +          + E+ D + +   ++  W  LK
Sbjct: 507 KIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809
           + V   G+ + N +A+AP  +I+ I   + S+ P    +  +     G       +L N 
Sbjct: 565 ENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                         +    + +A++ D   +I++ +  Q+ +DQ
Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653

Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++                   + + L  +   A   G+K+ YY+R+
Sbjct: 654 GMSLTLFMRSTIPTGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|204929412|ref|ZP_03220486.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321131|gb|EDZ06331.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 714

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 176/680 (25%), Positives = 286/680 (42%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLIREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +RG GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRGAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|328885529|emb|CCA58768.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Streptomyces venezuelae ATCC 10712]
          Length = 941

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 128/668 (19%), Positives = 235/668 (35%), Gaps = 42/668 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L DR       +  E           G      + E    E    L    F  
Sbjct: 70  RETGLKQLIDRIVKTYTKAGEE----------YGYFASPADAEIFEHELAYALLHQIFSF 119

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R    
Sbjct: 120 NSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKE 179

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F+  +    +
Sbjct: 180 LLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVKEEE 238

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +    +  V           ++        G  F            R
Sbjct: 239 KIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVESGGTF--------GLTSR 290

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E    
Sbjct: 291 MTGEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCSEYMH- 349

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +   CNL S+NL+         N  F+ ++ A  +   +  +D  I       +K 
Sbjct: 350 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKVVELVITAMDISICFADFPTQKI 406

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++   +R +G+G     + L      Y S     +A      ++  +   S ELA   G
Sbjct: 407 GENTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVG 466

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762
           AY  +  +                +      ++      +   W ++ +     G RN+ 
Sbjct: 467 AYDGYARNAAPHQRVMQQHADENTKAVRMDDLDSPIWAAATEAWQDVIRLGAKHGFRNAQ 526

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              IAPT TI       +  ++P    + + K    G   +VN  +   L++    +E +
Sbjct: 527 ASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 586

Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875
            + +      G++ +   +  +  ++   A     I  M  +   +  Q WI  A S  +
Sbjct: 587 EAIVAHIAEHGNVIDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTV 646

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            L E  + + ++ +Y +AW MG+K     R         S  K  D K      ++    
Sbjct: 647 NLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAKKKEDEKAEVTAKSEATIR 706

Query: 935 THSLGIPS 942
                +  
Sbjct: 707 EAVEKVVE 714


>gi|302554609|ref|ZP_07306951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472227|gb|EFL35320.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces viridochromogenes DSM 40736]
          Length = 959

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 120/601 (19%), Positives = 227/601 (37%), Gaps = 38/601 (6%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT +  Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQVFSFNSPVWFNVGTAQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E+F++ +    +  R   D              +            + ++    
Sbjct: 243 VDHPDIEDFIETKVKEEEKIRVLRDAGY----------DMDLGGDDITSVQYQNANNSVR 292

Query: 514 YGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
              EF  A E   +   RG    +V  ++ A +L+RK+    +    P I + D  N   
Sbjct: 293 VNDEFMKAVEQGGQFGLRGRMTGEVIEEVDAKSLFRKIAEAAWACADPGIQYDDTINGWH 352

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                G + +SN C+E        +   CNL S+NL+         N  F+ ++    + 
Sbjct: 353 TCPESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFEAERFQKVVE 408

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             +  +D  I       +K  ++    R +G+G     + L      Y S     +A   
Sbjct: 409 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 468

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TS 742
              ++  A   S ELA   G Y  +  +                +      ++      +
Sbjct: 469 TSLMTGTAYRRSSELAAVVGPYDGYARNADAHKRVMKQHFDANDKAVRMDDLDTPVWAAA 528

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              W ++ +  +  G RNS    +APT TI       +  ++P    + + K    G   
Sbjct: 529 SEAWQDVVRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQ 588

Query: 801 VVNSFLVNELKQRDL---WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF---EIDPM 854
           +VN  +   L++       +EA+++ +  H G++ +   +  +  ++   A     I PM
Sbjct: 589 IVNGTVPQALRRLGYLEEQNEAIVAHIAEH-GNVIDAPGLKPEHYEVFDCAMGERAISPM 647

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             +   +  Q WI  A S  + + E  + ++++ IY +AW +G+K     R         
Sbjct: 648 GHVRMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQPL 707

Query: 914 S 914
           S
Sbjct: 708 S 708


>gi|72080560|ref|YP_287618.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 7448]
          Length = 713

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 170/737 (23%), Positives = 297/737 (40%), Gaps = 99/737 (13%)

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            +    + E     ++       +       +L  L         F   ++G    Y  Y
Sbjct: 47  FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 106

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L  N + +   + F  RV +          ++A +    +    F  +TPT  N+G  +
Sbjct: 107 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 165

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +  SC+L  V D++  I  A+  +  L+K  GG+    + +R  GA I     ++ GV
Sbjct: 166 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 225

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 226 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 285

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542
           IP++  +    N    LFS   V D+  +Y K F      ENY +     EIK    ISA
Sbjct: 286 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQMLANPEIKKTF-ISA 341

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597
             L++ +  + FE+G+P+I F+D  N      H   V  SNLC+EIT  S+         
Sbjct: 342 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSRFLPDLS 399

Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGS+N+     +   D++++      A+ V+    D++       +K N
Sbjct: 400 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 456

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + + AIGLG M     L    I Y S EA++  +     ++F A  AS +LA++ G +S 
Sbjct: 457 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 516

Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           F+ + +  G +      +             E+  +  +   ++  W  L +++K  G+ 
Sbjct: 517 FEKTKFASGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIA 576

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS+ MAIAPT +I+ +   + S+ P    + ++         V S+              
Sbjct: 577 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 622

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                           ++     K +   A+E+ P+ +I   S  QK +DQA S+ L++ 
Sbjct: 623 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 666

Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +  + + L+  Y  A+    K+ YY+R R                               
Sbjct: 667 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 695

Query: 938 LGIPSSCTSDTECEVCQ 954
             +     +   C+ CQ
Sbjct: 696 QDVLEDSENYETCQSCQ 712


>gi|322831490|ref|YP_004211517.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp.
           Y9602]
 gi|321166691|gb|ADW72390.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp.
           Y9602]
          Length = 720

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 169/740 (22%), Positives = 297/740 (40%), Gaps = 78/740 (10%)

Query: 204 FSSRTLIEKEP-----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
            ++  L   +P     +Y  + A   L     ++     +   +    +       +F  
Sbjct: 1   MAATELAITDPGTRGPDYHALNAMLNLFDANGQIQFDKDRLAARQYFLQHVNQNTVFFHN 60

Query: 259 Y-------IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310
                   +EEG     + +     D+  L      ++     +LG    Y  Y L   +
Sbjct: 61  LAEKLRYLVEEGYYEAAVLDQYAFDDIKALFKQAYAKKFRFQTFLGAFKYYTSYTLKTFD 120

Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
           G R  E  +     VA+ LA  + +       F + + S  F  +TPT  N G +   +L
Sbjct: 121 GKRYLERYEDRVCMVALTLARGDIQLAGH---FVDEIISGRFQPATPTFLNCGKKQRGEL 177

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP +
Sbjct: 178 VSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFMLTNIREVGAPIKRIENQSSGVIPIM 237

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 238 KMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDI 297

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWR 547
             +    N    LFSP     +  +YG        + + +    + ++ + KI+A   ++
Sbjct: 298 TFELAKNNEDMYLFSP---YHVEKVYGVPMSEISISEKYREMVNDKRIHKSKINAREFFQ 354

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----- 602
            +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   +S              
Sbjct: 355 VLAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNSPTIYGEDLSYQEIG 412

Query: 603 --GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
              S NL +    +  D     +T+  AVR L  V D+ +  ++    + N    AIGLG
Sbjct: 413 KDISCNLGSLNIASAMDSPDFGNTVEMAVRALTAVSDMSHIRSVPSIDQGNQDSHAIGLG 472

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQ 718
            M     L    I Y S E ++  +     ++FHAI AS ++A E + ++  F  S +  
Sbjct: 473 QMNLHGYLCRERIYYGSEEGLDFTNIYFCTVAFHAIRASNQIAIERQQSFKGFSDSTYAS 532

Query: 719 GVFPIDSIG------------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           G +    +              + E+  +  +   +   W  LK  V   G+ N N  A+
Sbjct: 533 GAYFDKYVDDALAAKWQPKTERVRELFADAGIAIPTTADWAALKASVMQHGLYNQNLQAV 592

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G      +F+ N+                
Sbjct: 593 PPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAAFMTND---------------- 636

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                              +  A+EI P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 637 ---------------NLDYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRD 681

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 682 INKAQIYAWRKGIKTIYYIR 701


>gi|319788201|ref|YP_004147676.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466713|gb|ADV28445.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 718

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 127/628 (20%), Positives = 244/628 (38%), Gaps = 56/628 (8%)

Query: 321 FMRVAMGL---ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFL 373
           + RVA  L      E ++      F   L       +     N+G +  +      +C +
Sbjct: 50  YQRVARALADAEQTEEKRTYWYERFLWALRRGAI-PAGRITSNAGAQEHKPATSTINCTV 108

Query: 374 T-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + T+ D + GI   + E  +  K   G+G +++ +R  GA + G    + G + F+ + +
Sbjct: 109 SGTIGDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPRGAFVAGAGAYTSGPMSFMDIFD 168

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                V+  G R+GA     +  H DV++F+  ++    +  R    N +  I D FM+ 
Sbjct: 169 KMCFTVSSAGGRRGAQMGTFDVSHPDVKDFIRAKR----EDGRLRQFNLSLLITDGFMEA 224

Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEI----KVFRKISAV 543
           V  +  W L  P         DL +     +     + +    R +     K++  I A 
Sbjct: 225 VDADGDWPLVFPVNRKEEADIDLSNADQVVWRDWPAHDDAYIVRDDGMVACKIYGHIKAR 284

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  ++   ++   P     D  N  +       + ++N C E  L         C LG
Sbjct: 285 HLWEMIMVSTYDYAEPGFILIDRVNEMNNNWWCENIRATNPCGEQPLPPY----GACLLG 340

Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           S+NL     +       FD+++    +R   R+LDNV+++N   +E+ +      R  G+
Sbjct: 341 SVNLTKFVRDPFTDKASFDWEEYKEVVRVFTRMLDNVVEVNGLPLEQQRNEIMRKRRHGM 400

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---- 714
           G +G  S L +L + Y S +++   ++    ++       + LA+E+G       +    
Sbjct: 401 GFLGLGSTLTMLRMKYGSADSLGFTEQVARDMAVAGWEVGLSLAKEKGPAPIMDETFTVT 460

Query: 715 ---LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMA 765
              L  +     D   +  E+  ++   R SR          +L   +   G R ++  +
Sbjct: 461 PQMLRQRPEMAKDGWRVGQEIEGKVLHARYSRYMQRIASVAPDLVDELAETGARFTHHSS 520

Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           IAPT TI+       S  I+PS+ + Y ++ +               ++ D++   +++ 
Sbjct: 521 IAPTGTISLSLANNASNGIEPSFAHHYSRNVI--------REGKKSKEKVDVYSFELLAY 572

Query: 824 LKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            +  +         P+  L     +A +I P   ++  +  QKW+D + S    +  +  
Sbjct: 573 RELVNPKAMPFSDDPEAQLPDYFISADDISPKEHVDVQAAAQKWVDSSISKTANVPTDYP 632

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +    IYR A   GLK     R   A 
Sbjct: 633 YEDFKDIYRYAHQQGLKGCTTFRFNPAA 660


>gi|194427894|ref|ZP_03060440.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
 gi|194414127|gb|EDX30403.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli B171]
          Length = 714

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 172/707 (24%), Positives = 287/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
             ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 VRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|260579707|ref|ZP_05847566.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602137|gb|EEW15455.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 720

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 172/714 (24%), Positives = 296/714 (41%), Gaps = 74/714 (10%)

Query: 225 LEKLRREVLTTVYKKPQKATHH------EMQCLYPEYFCRYIEEGVKARLLHES-MMDFD 277
           +  L  +     + K ++A +           +Y       ++  V         +  ++
Sbjct: 28  MLNLYNDAGEIQFDKDREAANQYFLQHVNQNTVYFHDLEEKVKYLVDNEYYDPEVLDQYE 87

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVAMGLALKE 332
             ++ +  K      F +      Y  Y        +G R  E  +     VA+GLA  +
Sbjct: 88  FSFVKSLFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGD 147

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391
               + A    + +    F  +TPT  N G +   +  SCFL  + D++  I  ++    
Sbjct: 148 ---TELASNLVDEIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSAL 204

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + VR  GA I     +S GVIP +K+  D     NQ G R+GA   Y
Sbjct: 205 QLSKRGGGVALLLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVY 264

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 265 LHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVE 321

Query: 512 DLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YGK F      E+YE   +   I+  + I+A A ++ +  + FE+G+P+I F+D  N 
Sbjct: 322 RVYGKPFADVSVTEHYEEMVEDPRIRKSK-INARAFFQTLAEIQFESGYPYIMFEDTVNK 380

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLA 622
            +P    G +  SNLC+EI   S+  E              S NL +       D +  +
Sbjct: 381 ANPI--EGRITHSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIAKAMDSEDFS 438

Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            TI TA+R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S EA++
Sbjct: 439 KTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALD 498

Query: 682 IADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEV 732
             +     + + A+ AS ++AQER   + +F+ S +  G F               + ++
Sbjct: 499 FTNAYFATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERVRQI 558

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
               ++   +   W +LK+ V+  G+ N N  AI PT +I+ I   + SI P    + ++
Sbjct: 559 FGNSSIQVPTAQDWQQLKEAVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIR 618

Query: 793 SNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G       ++ N                               +  + +  A+EI
Sbjct: 619 KEGKIGRVYYPAPYMTN-------------------------------ENLEYYEDAYEI 647

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
               +I++ +   K++DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 648 GYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIR 701


>gi|222102711|ref|YP_002539750.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium
           vitis S4]
 gi|221739312|gb|ACM40045.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium
           vitis S4]
          Length = 693

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 177/705 (25%), Positives = 290/705 (41%), Gaps = 69/705 (9%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESM-MDFDLVYLAND 284
           +L ++ L       Q    + +      E     ++EG   + + +    +F      + 
Sbjct: 12  QLDKDALAAKQYFLQHVNQNTVFFHNLREKLDYLVDEGYYEQAVLDQYAFNFVRDLFDHA 71

Query: 285 LKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVE 341
               + F F  +LG    Y  Y L   +G R  E  +     VA+ LA      E  A +
Sbjct: 72  YV--KKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLAQG---NEALARD 126

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             + + S  F  +TPT  N+G +   +L SCFL  + D++  I   +     L+K  GG+
Sbjct: 127 MVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIARGINSALQLSKRGGGV 186

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 187 ALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIM 246

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +YG  F  
Sbjct: 247 RFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSP---YDVERVYGVAFSE 303

Query: 521 --AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
               E Y        I+  +KI A   ++ +  + FE+G+P+I F+D  N  +P    G 
Sbjct: 304 ISVTEKYREMVADSRIRK-KKIKARDFFQVLAEIQFESGYPYIMFEDTVNRANPI--AGR 360

Query: 579 VHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +  SNLC+EI         N       +    S NL +       D      TI TA+R 
Sbjct: 361 ISMSNLCSEILQVSDVSTYNDDLSYKTMGKDISCNLGSLNIAAVMDSSDFGRTIETAIRA 420

Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D+ +  ++   +K N    AIGLG M     L    I Y S E ++  +     +
Sbjct: 421 LTAVSDMSHISSVPSIEKGNDDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNMYFYTV 480

Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRT 741
           ++HAI AS  +A ERG  +  F+ S +  G +               +AE+ +   ++  
Sbjct: 481 TYHAIRASNRIAAERGTSFKGFENSKYASGEYFDKYTQTEWLPATRRVAELFETAGISIP 540

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFT 800
           ++  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G   
Sbjct: 541 TQEDWLALKEVVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVY 600

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               + +D    +  A+EI P  +I++ 
Sbjct: 601 YP-------------------------------AAFMSNDNLDYYQDAYEIGPEKIIDTY 629

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 630 AAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 674


>gi|225869988|ref|YP_002745935.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. equi 4047]
 gi|225699392|emb|CAW92839.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. equi 4047]
          Length = 724

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 167/749 (22%), Positives = 305/749 (40%), Gaps = 80/749 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  ++    +      + + ++     +         ++
Sbjct: 29  KEAVQRYLEEHVYPQSLSFDSLEEKW-RYLVAHDYYDQEILKAYSAECITEAFTYAYQQK 87

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                 +G    Y  Y L        + + F  R  M              +  + + S 
Sbjct: 88  FSFLSLMGAMKFYQSYALKTLDGSQYL-EHFEDRAVMNALFLANGDPDLVRDLIDQILSG 146

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N+G +   +  SC+L  + D++  I  A+  +  L+K  GG+    T +R
Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLR 206

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H ++  FLD ++ 
Sbjct: 207 EVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFLDTKRE 266

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+        E  
Sbjct: 267 NADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAITEEYD 323

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  + +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  SNLC+E
Sbjct: 324 RLVANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   S++             E   CNLGSIN+     +           I T+VR LD+V
Sbjct: 384 IAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAV----GFEQLIATSVRALDHV 439

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
               +       +K N  + A+GLG M     L   HI Y S EAV+  D     ++++A
Sbjct: 440 SRASDVSCAPSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSAEAVDFTDLFFHTMAYYA 499

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPW 746
             AS +LA+E+GA++ F+ S +  G +    +   A+ +        +   +   S   W
Sbjct: 500 FKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYGLRVPSVADW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            EL   ++  G+ N++ MA+APT +I+ +   + S+ P    + V+         V ++ 
Sbjct: 560 QELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHLGRIYVPAY- 618

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQK 865
                                        +I DD    +   A+E+ P  +I   +  QK
Sbjct: 619 -----------------------------QISDDNYAYYERGAYEVGPEPIINIVAAAQK 649

Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            +DQA SL L++ +  + + L+  Y  A+ +   + YY+R R                 +
Sbjct: 650 HVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR----------------QD 693

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  ++       + +  +  S   C+ C
Sbjct: 694 VLEGSEQYEEDTIVALTDTNASGEACQSC 722


>gi|239833483|ref|ZP_04681811.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           intermedium LMG 3301]
 gi|239821546|gb|EEQ93115.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           intermedium LMG 3301]
          Length = 722

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 179/745 (24%), Positives = 299/745 (40%), Gaps = 93/745 (12%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S   L+   + +   L + E     +  +  AR    +   +     +   +K  +   +
Sbjct: 18  STDGLDYHALNAMLNLYDDEGKIQLDRDRQAARQYFLQHVNQNTVFFHNLREKLDYLVSE 77

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308
             Y            +  +L +   +F          Y + F F  +LG    Y  Y L 
Sbjct: 78  GYY------------EQEVLDQYSFNFVRDLFDEA--YAKKFRFPTFLGAFKYYTSYTLK 123

Query: 309 -INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             +G R  E  +    RV M         E+ A +    + S  +  +TPT  N+G +  
Sbjct: 124 TFDGKRYLERYED---RVCMVALALARGNEQLARDLMEEIISGRYQPATPTFLNAGKKQR 180

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+I
Sbjct: 181 GELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIQNQSSGII 240

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    I
Sbjct: 241 PVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVI 300

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           PD+  +    N    LFSP +V  ++   L        Y      A   +    +KI+A 
Sbjct: 301 PDITFELAKNNEDMYLFSPYDVERVYGMPLTEISVSEKYREMVDDARIAK----KKINAR 356

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------N 591
             ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               
Sbjct: 357 EFFQVLAEIQFESGYPYIMFEDTVNRANPI--DGRITMSNLCSEILQVSEASVFREDLSY 414

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650
               +   CNLGS+N+ A       D      TI T++R L  V D+ +  ++    + N
Sbjct: 415 DYLGKDISCNLGSLNIAAA-----MDSSDFGKTIETSIRSLTAVSDMSHIGSVPSVARGN 469

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYS 709
               AIGLG M     L    I Y S E V+  +     +++HAI AS  +A E   ++ 
Sbjct: 470 DESHAIGLGQMNLHGYLARERIYYGSEEGVDFTNIYFYTVTYHAIRASNLIAVEAGKSFK 529

Query: 710 SFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G +       L E          D+  +   ++  W +LKK V   G+ N 
Sbjct: 530 GFEKSKYASGEYFDKYTEQLWEPATERVREIFDKAGIAIPTQDDWRDLKKAVMEGGLYNQ 589

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
           N  A+ PT +I+ I   + SI P    + ++     G      +F+ N+           
Sbjct: 590 NLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMTND----------- 638

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                   +  A+EI P  +I++ +   + +DQ  SL L+  + 
Sbjct: 639 --------------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDT 678

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
            + + ++     AW  G+KT YY+R
Sbjct: 679 ATTRDINRAQIYAWKKGIKTIYYIR 703


>gi|302866053|ref|YP_003834690.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
 gi|302568912|gb|ADL45114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
          Length = 964

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/619 (19%), Positives = 223/619 (36%), Gaps = 28/619 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 116 GYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILD 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E   + +   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 176 WYKEEGRIFQGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF+  +    D  R   D      +    +  V           
Sbjct: 235 RAAKMVILDVDHPDIEEFVATKAREEDKIRALRDAGFDMDLGGADIVSVQYQNANNSVRV 294

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G  F++          R + +    I A  L+  +    +E   P + + 
Sbjct: 295 SDEFMTAVENGGGFDLR--------GRLDGQTIETIDAKKLFHTISQAAWECADPGLQYD 346

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
           D  N        G + +SN C+E        + + CNL S+NL+     +  F+ +K   
Sbjct: 347 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVK 402

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I       EK  ++   +R +G+G     + L    +PY S +  E++
Sbjct: 403 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGREVS 462

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                 ++  A   S ELA   G Y  +  +                 ++       A+ 
Sbjct: 463 AAITSLMTGTAYRRSAELAGIVGPYDGYARNAEPHKRVMRKHAAANDAIKATGTVATAVQ 522

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           R +   W    K     G RNS    +APT TI  +    +  ++P    + + K    G
Sbjct: 523 REATKQWTLGNKLGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 582

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L+     +E + + +      G + +   +  +   +   A     I 
Sbjct: 583 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 642

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R       
Sbjct: 643 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 702

Query: 912 EKSTLKGVDGKLNAVPVTD 930
             S  K             
Sbjct: 703 PLSAAKPNKATAETQAPAA 721


>gi|50313262|ref|YP_053066.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 1]
 gi|132607|sp|P28846|RIR1_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|42795148|gb|AAS45905.1| large subunit of ribonucleotide reductase [Equid herpesvirus 1]
 gi|49617005|gb|AAT67278.1| ribonucleotide reductase RR1 [Equid herpesvirus 1]
          Length = 790

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 166/653 (25%), Positives = 276/653 (42%), Gaps = 63/653 (9%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK--------------EKRAVEFYNLLS 347
            + Y   + G RIE    FF+R+A        E+                    ++  L+
Sbjct: 141 EEMYLAKMRGGRIESMGQFFLRLATTATHYTMEEPAMARVLVSGEVGWTYIFKAYFTALA 200

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               + +TP +   G     L+SC+L    V D    +   ++E   +    GG+G    
Sbjct: 201 GQVLIPATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCNRGGIGLSLQ 260

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
                        G S+GV+  LK+ +   +A+N  G+R   VC Y E WH D+   L++
Sbjct: 261 RFNT-----PPKEGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYFEPWHADIRAILNM 315

Query: 466 R-KNTGDDRRRTHDMNTANWIPDLFMKRVT-----QNAGWTLFSPDEVSDLHDLYGKEFE 519
           R     D+  R  ++    W PDLF  R       ++        D  S L  +YGKEFE
Sbjct: 316 RGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLFDDTASHLCHMYGKEFE 375

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVG 577
             YE  E+     +      I    +   ++     TG P++ FKD CN       +  G
Sbjct: 376 EEYERLEQCGFGVD-----SIPIQDMAFIIVRSAVMTGSPFLMFKDACNKHYHFDLRRKG 430

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAV 629
            +  SNLCTEI  ++   +  VCNL SINL    A           FD+  L     TA 
Sbjct: 431 AIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPYFDFAALGRAAATAT 490

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
             +++++    +   K+++    +R++GLG+ G  +A  +L +  ASPEA ++  +  E 
Sbjct: 491 IFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEARQLNKQIAER 550

Query: 690 ISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
           +  +++ AS  L +     +  F+ S +  G  P DS            +   +R  W  
Sbjct: 551 LLLNSMKASATLCRLGMKPFKGFEDSKYSLGELPFDSYP---------GVTLANRNAWRR 601

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L+  +K  G+ NS  +A  PT + + +   S+   P Y NL+ K   +G+    N  L+ 
Sbjct: 602 LRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNLLLMR 661

Query: 809 ELKQ---RDLWDEAMISDLKYHDGSIGNIER-IP-DDLKKIHATAFEIDPMWLIESASRR 863
            ++    R+      +S L+    S+      +P         TAFE D   LI+  + R
Sbjct: 662 TIRSIFPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFKTAFEYDQRTLIDMCADR 721

Query: 864 QKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
             ++DQ+QS++L++ EP        K+  +   A+  GLKT  YY + + AT+
Sbjct: 722 APFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKKATN 774


>gi|315298702|gb|EFU57956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 16-3]
          Length = 701

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMTTHVRPNCVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDKKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|300906828|ref|ZP_07124509.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|301306008|ref|ZP_07212088.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|300401429|gb|EFJ84967.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 84-1]
 gi|300838719|gb|EFK66479.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 124-1]
 gi|315254451|gb|EFU34419.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 85-1]
          Length = 701

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   + + E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A++I    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYKIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|205357273|ref|ZP_02346446.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205322676|gb|EDZ10515.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 714

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 173/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     ++EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVQEGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENVQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|144227518|gb|AAZ44306.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae J]
          Length = 720

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 169/737 (22%), Positives = 296/737 (40%), Gaps = 99/737 (13%)

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            +    + E     ++       +       +L  L         F   ++G    Y  Y
Sbjct: 54  FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 113

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L  N + +   + F  RV +          ++A +    +    F  +TPT  N+G  +
Sbjct: 114 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 172

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +  SC+L  V D++  I  A+  +  L+K  GG+    + +R  GA I     ++ GV
Sbjct: 173 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 232

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 233 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 292

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542
           IP++  +    N    LFS   V D+  +Y K F      E Y +     EIK    ISA
Sbjct: 293 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISA 348

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597
             L++ +  + FE+G+P+I F+D  N      H   V  SNLC+EIT  S+         
Sbjct: 349 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLS 406

Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGS+N+     +   D++++      A+ V+    D++       +K N
Sbjct: 407 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 463

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + + AIGLG M     L    I Y S EA++  +     ++F A  AS +LA++ G +S 
Sbjct: 464 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 523

Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           F+ + +  G +      +             E+  +  +   ++  W  L +++K  G+ 
Sbjct: 524 FEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPTQKDWIHLVEKIKKTGIA 583

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS+ MAIAPT +I+ +   + S+ P    + ++         V S+              
Sbjct: 584 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 629

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                           ++     K +   A+E+ P+ +I   S  QK +DQA S+ L++ 
Sbjct: 630 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 673

Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +  + + L+  Y  A+    K+ YY+R R                               
Sbjct: 674 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 702

Query: 938 LGIPSSCTSDTECEVCQ 954
             +     +   C+ CQ
Sbjct: 703 QDVLEDSENYETCQSCQ 719


>gi|307944766|ref|ZP_07660104.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp.
           TrichSKD4]
 gi|307771980|gb|EFO31203.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp.
           TrichSKD4]
          Length = 715

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 175/743 (23%), Positives = 309/743 (41%), Gaps = 89/743 (11%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           + ++L+   + +   L +++ +      R    +   +     +        H +Q    
Sbjct: 11  ASAELDYHALNAMLNLYDEKGHIQFEADRQAARQYFLQ-----HVNQNTVFFHSLQ---- 61

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-I 309
           E     + EG     +   +  +D  ++ +     Y R F F  +LG    Y  Y L   
Sbjct: 62  EKLGYLVREGYYEAEV---LEQYDPAFVQSVFDAAYARKFRFPTFLGAFKYYTSYTLKTF 118

Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
           +G R  E  +   + VA+ LA  + +   R +   + + S  F  +TPT  N+G +   +
Sbjct: 119 DGKRYLERFEDRVVMVALTLAQGDEDLAMRMM---DEIISGRFQPATPTFLNAGKKQRGE 175

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  + D++  I   +     L+K  GG+    T +R  GA I G   +S GVIP 
Sbjct: 176 LISCFLLRLEDNMESIGRGINSALQLSKRGGGVALLLTNIREAGAPIKGIENQSSGVIPV 235

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    IPD
Sbjct: 236 MKLLEDSFSYANQLGARQGAGAVYLNAHHPDILQFLDTKRENADEKIRIKTLSLGVVIPD 295

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           +  +   +N    LFSP +V  ++   L        Y          +    +KISA   
Sbjct: 296 ITFELAKRNEDMYLFSPHDVEKVYGTSLSQISITDKYREMVDDPRIRK----KKISARGF 351

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593
           ++ +  + FE+G+P++ F+   N  SP    G ++ SNLC+EI                 
Sbjct: 352 FQTIAEIQFESGYPYVLFEGTANRASPV--DGHINMSNLCSEILQVNEASVFNDDLSYEH 409

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHT 652
                 CNLGS+N+         D   L +T+ TAVR L  V +++   ++   ++ N  
Sbjct: 410 LGTDISCNLGSLNIAKA-----MDGGDLGATVETAVRALTAVSNMSAIDSVPSVRRGNDE 464

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711
             AIGLG M     L    I Y S E ++  +     +++H + AS +LA+E+  ++  F
Sbjct: 465 SHAIGLGQMNLHGYLARERIHYGSEEGIDFTNIYFYAVAYHCLRASNKLAREQGSSFKGF 524

Query: 712 KGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           + S +  G F    I               +   ++  +   W  LK+ V+  G+ N N 
Sbjct: 525 EKSRYADGSFFDKYIENDWMPATERIANLFETAGISLPTCDDWQALKEAVQRDGLYNRNL 584

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822
            A+ PT +I+ I   + SI P    + ++     G      +++ N+             
Sbjct: 585 QAVPPTGSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAAYMDND------------- 631

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881
                                 +  A+EI P  +I++ +   + +DQ  SL L+  +  +
Sbjct: 632 ------------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTAT 673

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            + ++     AW  G+KT YY+R
Sbjct: 674 TRDINRAQIYAWKKGIKTIYYIR 696


>gi|289423476|ref|ZP_06425278.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156110|gb|EFD04773.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 704

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 161/676 (23%), Positives = 275/676 (40%), Gaps = 59/676 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311
           E     +E     + + E      +  L   +         Y+     Y+ Y L  +   
Sbjct: 51  EKIDYLVENAYYEKEIIEKYSREFIDELYKYICSFGFEFMSYMSASKFYENYALKTDDGK 110

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSS 370
             +E  +   +  ++ +A  +    + A +    L    F  +TPT  N    R  QL S
Sbjct: 111 KILENYEDKILICSLAIASGD---TRVAKDVAKRLIKQEFQPATPTFLNLGRKRAGQLVS 167

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL TV D   GI  A+     L+K  GG+  + T +R  G  I G  G S GV+   K+
Sbjct: 168 CFLLTVEDSCEGISYAVASANHLSKIGGGVALNLTRLRARGESIKGIEGASGGVVGVAKM 227

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
              +    NQ G R+GA   YL   H D +  +D +K   D+R R   ++    IPD+FM
Sbjct: 228 LEQSFSYFNQMGARQGAGAVYLNVLHADFDALMDTKKINADERVRLATLSIGAIIPDVFM 287

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           K   +N     F P  +   + L+  +     E Y++     +I+  ++I+   +  ++ 
Sbjct: 288 KLAEKNEVGYAFYPHSIYKKYALHLDDLN-MNEWYDKLVADPDIRK-KEINPRVILTRIA 345

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------- 602
               E+G+P+I + D  N     + +G+V  SNLC EI    S                 
Sbjct: 346 ATQMESGYPYIVYIDTANKNHTLKGLGMVRMSNLCCEIFQYQSPSHIEGYGSKNSQWGQD 405

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +    N  +  ++   I  A+R L +V D  N   +   K  N    ++GLG M
Sbjct: 406 ISCNLGSLNIANIMEGKEMGHAIDVAIRFLTDVSDRTNIEEVPTVKNGNDKSHSVGLGAM 465

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
                L   +I Y S EAV+  +     + +HAI  S+++A+E+   +  F+ S + +G 
Sbjct: 466 NLHGYLMKNNIRYDSDEAVDFCNVFFAMMRYHAIKTSMKIAKEKGQTFDGFEKSEYSKGE 525

Query: 721 --------FPIDSIGLLAEVRDELAMNRTSR-LPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                   + ID +    +VR         R   W +L  +VK +G+ N+  MAIAPT +
Sbjct: 526 SSDVLGKYYQIDYLPKTDKVRALFEGMMIPRKEDWKDLLDQVKEVGIYNAYLMAIAPTQS 585

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ +   + S+ P  + + V+            FL N                       
Sbjct: 586 ISYVQNATSSVMPITEQIEVRIYGDSTTIYPMPFLTN----------------------- 622

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYR 890
                   +    + +A+  D + +I+  +  Q  +DQ  S  L++ +  + + +   Y 
Sbjct: 623 --------ENLLFYKSAYNTDMLKVIDVVAAVQDHVDQGISTTLFVTDDKTTRDIARYYI 674

Query: 891 QAWLMGLKTTYYLRSR 906
            A+  GLK+ YY R++
Sbjct: 675 YAYKKGLKSLYYTRTK 690


>gi|59859089|gb|AAX09329.1| NrdE [Corynebacterium stationis]
          Length = 720

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 164/690 (23%), Positives = 276/690 (40%), Gaps = 67/690 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301
             H     +Y       IE  V+ +     +++ +D  ++ +  K    F F +      
Sbjct: 51  LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKSFLGA 110

Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Y  Y        +G R  E  +    RV+M            A    + + S  F  +TP
Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQPATP 167

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G     +L SCFL  + D++  I  A+  +  L+K  GG+    + +R  GA I 
Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIK 227

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R
Sbjct: 228 HIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIR 287

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGE 533
              ++    IPD+      +N    LFSP +V  ++            Y          +
Sbjct: 288 IKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVSDHYAEMVEDPRITK 347

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
               +KI+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S
Sbjct: 348 ----KKINARHFFQTVAELQFESGYPYIMFEDTVNNANP-VKTGRINMSNLCSEILQVNS 402

Query: 594 SEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
                       + +  S NL +       D      T+  A+R L  V D     ++  
Sbjct: 403 PSSFNDDLSYEEMGSDISCNLGSMNIALAMDSPDFGGTVEAAIRGLTAVADKTAIDSVPS 462

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +  N    AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+ER
Sbjct: 463 IRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYAALRASNKIAKER 522

Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
              +S FK S +  GVF  +            + E+     ++  S   W +LK  V   
Sbjct: 523 GETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAEDWADLKAEVMEH 582

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815
           G+ N N  A+ PT +I+ I   + SI P    + ++     G        + N+      
Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                           A+E+    +I++ +   K++DQ  SL L
Sbjct: 637 -------------------------NLDYFQDAYEVGHEKIIDTYAVATKYVDQGLSLTL 671

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  +  + + ++     AW  G+KT YY+R
Sbjct: 672 FFKDTATTRDINRAQIYAWRKGIKTLYYIR 701


>gi|54020061|ref|YP_115672.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 232]
 gi|53987234|gb|AAV27435.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           hyopneumoniae 232]
          Length = 720

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 172/790 (21%), Positives = 310/790 (39%), Gaps = 115/790 (14%)

Query: 196 SDLETALIFSSRTLIEKEPN---YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
            +     + ++  +    P+   +  + A    + +  E+              +    +
Sbjct: 14  QEKSYLSLNANSKIFTNHPDSHKFDLLAAE---KYINEEINPKF----------KFFNSF 60

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E     ++       +       +L  L         F   ++G    Y  Y L  N +
Sbjct: 61  KERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDN 120

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
            +   + F  RV +          ++A +    +    F  +TPT  N+G  +  +  SC
Sbjct: 121 LVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSC 179

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +L  V D++  I  A+  +  L+K  GG+    + +R  GA I     ++ GVIP +K+ 
Sbjct: 180 YLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKIL 239

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    IP++  +
Sbjct: 240 EDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFE 299

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
               N    LFS   V D+  +Y K F      E Y +     EIK    ISA  L++ +
Sbjct: 300 LAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISARKLFKII 355

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P+I F+D  N      H   V  SNLC+EIT  S+                
Sbjct: 356 AELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLSFKEIGKD 413

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGS+N+     +   D++++      A+ V+    D++       +K N+ + AIG
Sbjct: 414 ICCNLGSLNIDKAMES-GPDFEQMVYYSVLALDVVSRNSDLSVA--PSIQKGNNLNHAIG 470

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L    I Y S EA++  +     ++F A  AS +LA++ G +S F+ + + 
Sbjct: 471 LGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFA 530

Query: 718 QGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G +      +             E+  +  +   ++  W  L +++K  G+ NS+ MAI
Sbjct: 531 SGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIANSHLMAI 590

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + ++         V S+                     
Sbjct: 591 APTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY--------------------- 629

Query: 827 HDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                    ++     K +   A+E+ P+ +I   S  QK +DQA S+ L++ +  + + 
Sbjct: 630 ---------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRD 680

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           L+  Y  A+    K+ YY+R R                                 +    
Sbjct: 681 LNRAYIYAFKKNCKSIYYVRIR-------------------------------QDVLEDS 709

Query: 945 TSDTECEVCQ 954
            +   C+ CQ
Sbjct: 710 ENYETCQSCQ 719


>gi|114766103|ref|ZP_01445112.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114541658|gb|EAU44699.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 707

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 192/747 (25%), Positives = 316/747 (42%), Gaps = 90/747 (12%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
           M D +SE+ L+   + +   L + E     +  ++ AR    +   +     +   +K  
Sbjct: 1   MLDRMSET-LDYHALNAMLNLYDDEGHIRFDADRMAARQYFLQHVNQNTVFFHSLDEKLD 59

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYD 303
           +              +EEG     + E+     L  + +   +++ F F  +LG    Y 
Sbjct: 60  Y-------------LVEEGYYEAEVLEAYPRAFLQQIWDAA-FKKKFRFPTFLGAFKYYT 105

Query: 304 RYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
            Y L   +G R  E  +   + VA+ LA  + +     +E    + S  F  +TPT  N+
Sbjct: 106 SYTLKTRDGKRFLERYEDRVVMVALALARGDQDLAMSFME---EILSGRFQPATPTFLNA 162

Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           G +   +L SCFL  + D++  I   +     L+K  GG+    T +R  GA I G   +
Sbjct: 163 GKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQ 222

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++
Sbjct: 223 SSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLS 282

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK- 539
               IPD+  +   +N    LFSP +V     +YG  F       +      + ++ +  
Sbjct: 283 LGVVIPDVTFELAKRNEPMYLFSPHDV---EKIYGVPFSEISVTEKYDEMVEDKRIRKTK 339

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------- 590
           I+A + ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI           
Sbjct: 340 INARSFFQTLAEIQFESGYPYIMFEDTVNRMNPI--DGRITMSNLCSEILQVNEASEYNE 397

Query: 591 ---NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKA 646
               +       CNLGS+N+         D   L +T+  A+R L  V +++   ++   
Sbjct: 398 DLSYARMGTDISCNLGSLNIAKS-----MDGRDLGATVEAAIRALTAVSEMSAIDSVPSI 452

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
           +K N    AIGLG M     L   HI Y SPE VE        +++HAI AS  LA+ER 
Sbjct: 453 RKGNDESHAIGLGQMNLHGFLAREHIHYGSPEGVEFTSVYFATVAYHAIRASCALAKERG 512

Query: 706 GAYSSFKGSLWDQGVFPI---DSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMR 759
            ++  F  S +  GVF     +   L    R     +  +   R  W  LK  V   G+ 
Sbjct: 513 ESFKGFAASDYASGVFFDKYTERDWLPESDRVAELFDGIALPSRADWAALKADVMEHGLY 572

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDE 818
           N N  A+ PT +I+ I   + SI P    + ++     G      +F+ N+         
Sbjct: 573 NRNLQAVPPTGSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMNND--------- 623

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                                   + +  A+EI P  LIE+ +   + +DQ  SL L+  
Sbjct: 624 ----------------------NLEYYRDAYEIGPEALIETYAAATEHVDQGLSLTLFFP 661

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            E + + ++     AW  G+KT YY+R
Sbjct: 662 AEATTRDINRAQILAWKKGIKTIYYVR 688


>gi|306812444|ref|ZP_07446642.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
 gi|305854482|gb|EFM54920.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli NC101]
          Length = 714

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 287/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +Y K 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYSKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|323946353|gb|EGB42382.1| ribonucleotide reductase [Escherichia coli H120]
          Length = 701

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +    +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|161502143|ref|YP_001569255.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863490|gb|ABX20113.1| hypothetical protein SARI_00166 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 705

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 173/675 (25%), Positives = 286/675 (42%), Gaps = 62/675 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 51  DERLDTLVREGYYDDAILARYDRAFVLSLFGHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIQNQSSGVIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELLADSHVRKTYINARDFFQT 344

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCN 601
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S+           + +
Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYIHIGH 402

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +    +  D   +  T+ TA+R L  V D+ +  ++      N    AIGLG 
Sbjct: 403 DISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQ 462

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G
Sbjct: 463 MNLHGYLAREGIAYGSPEALDFTNFYFYTITWHALHTSMRLARERGKTFAGFAQSRYASG 522

Query: 720 VF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +
Sbjct: 523 DYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGS 582

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++    +G       F+ N                      
Sbjct: 583 ISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN---------------------- 620

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                    +   ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 621 ---------ENLDMYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 671

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+K+ YY+R
Sbjct: 672 IYAWRKGIKSLYYIR 686


>gi|220916577|ref|YP_002491881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954431|gb|ACL64815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 595

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 169/640 (26%), Positives = 269/640 (42%), Gaps = 86/640 (13%)

Query: 293 FEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
                  +L  RY L   G   IE P+A F RVA  +A  E    +   A  F   +++ 
Sbjct: 4   LGENARHVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEHPAARALWAERFEARMAAL 63

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             + ++PTL N+G  H QL++CF+  V DDL  IF AL+  A++ +  GG G  ++ +R 
Sbjct: 64  ELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRP 123

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  T+G + G + F++V +     + QGG R+GA  A L   H DV EF+D ++  
Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAA 183

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G +     + N +   PD       ++ GW L  P                         
Sbjct: 184 GLE-----NFNISVSAPDALFHAAARSGGWALRHPR------------------------ 214

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                 V R++ A  L  ++    + +G P + F D     +P   +G   + N C E  
Sbjct: 215 ---GGAVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQP 271

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
           L         C LGS+NL       + D ++L + +R  VR+LD+V+D+N   + +  + 
Sbjct: 272 LLPF----EACTLGSVNLARFERGGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEI 327

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
           +  +R IGLG+MG+   L  L IPY +PEA+ +A E M F+   A +AS  LA ERGA+ 
Sbjct: 328 SRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFP 387

Query: 710 SFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            F  S     G  P                                    RN+    IAP
Sbjct: 388 GFASSAPARSGGRP-----------------------------------RRNATVTTIAP 412

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL---- 824
           T T+A I G S  I+P +   YV+  +       ++ L  E         A  ++     
Sbjct: 413 TGTLAIIAGCSSGIEPLFALTYVRHALD------DAALPEEHPALGRALRAAGAEAALPA 466

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
               G    +  +PD + ++ ATA ++ P   +   +  Q+ +D   S  + L    S +
Sbjct: 467 VRAAGRARGVAGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVE 526

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            +   YR A+ +G K     R  S       +    +G+L
Sbjct: 527 DVACAYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566


>gi|331648396|ref|ZP_08349484.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
 gi|331042143|gb|EGI14285.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli M605]
          Length = 714

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
             ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 ERINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|322614369|gb|EFY11300.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621566|gb|EFY18419.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624427|gb|EFY21260.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626625|gb|EFY23430.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322633515|gb|EFY30257.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638442|gb|EFY35140.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639745|gb|EFY36429.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643791|gb|EFY40341.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649477|gb|EFY45911.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655933|gb|EFY52233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661328|gb|EFY57553.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662526|gb|EFY58734.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666900|gb|EFY63075.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671270|gb|EFY67393.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677723|gb|EFY73786.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681450|gb|EFY77480.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322683849|gb|EFY79859.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193762|gb|EFZ78965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197450|gb|EFZ82587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203265|gb|EFZ88294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205211|gb|EFZ90186.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212776|gb|EFZ97587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218082|gb|EGA02794.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221655|gb|EGA06068.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323230845|gb|EGA14963.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234804|gb|EGA18890.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238843|gb|EGA22893.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241543|gb|EGA25574.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248310|gb|EGA32246.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252924|gb|EGA36758.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256954|gb|EGA40663.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260571|gb|EGA44182.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264371|gb|EGA47877.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269505|gb|EGA52958.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 705

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 51  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 517

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686


>gi|68535548|ref|YP_250253.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           jeikeium K411]
 gi|68263147|emb|CAI36635.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           jeikeium K411]
          Length = 720

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 172/714 (24%), Positives = 293/714 (41%), Gaps = 74/714 (10%)

Query: 225 LEKLRREVLTTVYKKPQKATHH------EMQCLYPEYFCRYIEEGVKARLLHES-MMDFD 277
           +  L  +     + K ++A +           +Y       ++  V         +  ++
Sbjct: 28  MLNLYNDAGEIQFDKDREAANQYFLQHVNQNTVYFHDLEEKVKYLVDNEYYDPEVLDQYE 87

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVAMGLALKE 332
             ++ +  K      F +      Y  Y        +G R  E  +     VA+GLA  +
Sbjct: 88  FSFVKSLFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGD 147

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391
               + A    + +    F  +TPT  N G +   +  SCFL  + D++  I  ++    
Sbjct: 148 ---TELASNLVDEIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSAL 204

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    + VR  GA I     +S GVIP +K+  D     NQ G R+GA   Y
Sbjct: 205 QLSKRGGGVALLLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVY 264

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+ 
Sbjct: 265 LSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVE 321

Query: 512 DLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YGK F      E+YE   +   I+  + I+A A ++ +  + FE+G+P+I F+D  N 
Sbjct: 322 RVYGKPFADVSITEHYEEMVEDPRIRKSK-INARAFFQTLAEIQFESGYPYIMFEDTVNK 380

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLA 622
            +P    G +  SNLC+EI   S+  E              S NL +       D +  +
Sbjct: 381 ANPI--EGRITHSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIAKAMDSEDFS 438

Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            TI TA+R L  V D  +  ++   ++ N    AIGLG M     L   HI Y S EA++
Sbjct: 439 KTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALD 498

Query: 682 IADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR------- 733
             +     + + A+ AS ++AQER   + +F+ S +  G F           +       
Sbjct: 499 FTNAYFATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERIRQI 558

Query: 734 -DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
               ++   +   W +LK  V+  G+ N N  AI PT +I+ I   + SI P    + ++
Sbjct: 559 IGNSSIQVPTAQDWQQLKDDVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIR 618

Query: 793 SNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G       ++ N+                                 + +  A+EI
Sbjct: 619 KEGKIGRVYYPAPYMTND-------------------------------NLEYYEDAYEI 647

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
               +I++ +   K++DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 648 GYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIR 701


>gi|240047143|ref|YP_002960531.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           conjunctivae HRC/581]
 gi|239984715|emb|CAT04687.1| Ribonucleoside-diphosphate reductase [Mycoplasma conjunctivae]
          Length = 720

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 175/771 (22%), Positives = 306/771 (39%), Gaps = 101/771 (13%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ------CLYPEYFCRYIEEGVKARL 268
            Y  + A+  L    +E      +  +    + ++        + +     IE       
Sbjct: 17  EYIALNAKSKLFTKYKEAYKFDLQAAKSYIQNHIEPKFRKFENFHQRIQWLIENKFYDPQ 76

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
           +       +L  L       + F   ++G    Y  Y L  N  +  + + F  R  M  
Sbjct: 77  VINEYTFDELEKLNEQAYSYKHFFPSFMGAFKFYLSYALKSNDGQQYL-EHFEDRALMNA 135

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGAL 387
                   ++A +    +    F  +TPT  N+G  +  +  SC+L  V D++  I  A+
Sbjct: 136 LFLARGNYEKASKILRQIMLGRFQPATPTFLNAGKLNRGEFISCYLIRVEDNMESISRAV 195

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
             +  L+K  GG+    + +R  GA I     ++ GVIP +K+  D+    NQ G+R+GA
Sbjct: 196 TTSLQLSKRGGGVSVLLSNLREQGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQGA 255

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFS   V
Sbjct: 256 GAVYLNVHHPDILNFLDTKRENADEKIRIKSLSLGVVIPDITFELAKNNQDMALFS---V 312

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566
            D+ + YGK F       E        ++ +  ISA  L+  +  + FE+G+P+I F+D 
Sbjct: 313 YDVQNEYGKAFSDISITEEYYNLLNNDRIKKTFISARKLFTLIAELHFESGYPYILFEDT 372

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANN 614
            N R    H   +  SNLC+EI   S+  E               CNLGS+N+     + 
Sbjct: 373 VNKR--NAHPNRIVMSNLCSEIAQPSTPSEYLPDLTFSKIGQDICCNLGSLNIDKAMKS- 429

Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
             ++ ++      A+  +    D++       +K N  + A+GLG M     L    I Y
Sbjct: 430 GKEFGEMVYYSILALDHVSRNSDLS--AAPSIEKGNKLNHAVGLGAMNLHGFLSQNQIFY 487

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG------- 727
            SPEA++  +     ++FHA  +S  LAQ+ G +S F+ + +  G +             
Sbjct: 488 DSPEALDFTNIFFYTMAFHAFKSSSILAQKFGPFSGFENTKFANGSYFDKYTKAKSGEFE 547

Query: 728 ----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                + E+     +   ++  W +L + +K +G+ NS+ MAIAPT +I+ +   + S+ 
Sbjct: 548 PKTQKIKEIFAHYKVEIPTKQDWIDLVENIKRVGLANSHLMAIAPTGSISYLNSCTPSLQ 607

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P    + V+         V ++ +N                              D+++ 
Sbjct: 608 PVVSPVEVRKEGKLGRVYVPAYKINF-----------------------------DNMRY 638

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
               A+E+ P+ +I  A+  QK IDQ+ SL L+L +  + + L+  Y  A+  G  + YY
Sbjct: 639 YAKGAYELGPIPIINIAAEAQKHIDQSISLTLFLTDKATTRDLNKAYIHAFKKGCGSIYY 698

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +R R                                 +        ECE C
Sbjct: 699 VRIR-------------------------------QEVLEDSEKYDECEAC 718


>gi|320198427|gb|EFW73029.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli EC4100B]
 gi|323183201|gb|EFZ68598.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1357]
          Length = 714

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +    +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|240169544|ref|ZP_04748203.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           kansasii ATCC 12478]
          Length = 693

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 173/708 (24%), Positives = 294/708 (41%), Gaps = 75/708 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           +  ++VL       Q    + +      E     I E    R + +      +  L +  
Sbjct: 12  QFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENYYEREVLDQYSRNFVKSLLDRA 71

Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     +LG    Y  Y L   +G R  E  +   + V++ LA  +      A +  
Sbjct: 72  YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVSLTLAGGD---TTLAEQLV 128

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 129 DEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 188

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  F
Sbjct: 189 LLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 248

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-- 520
           LD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YG  F    
Sbjct: 249 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFADIS 305

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y    D   I+  + I A   ++ +  + FE+G+P+I F+D  N  +P    G + 
Sbjct: 306 VTEKYYEMVDNPRIRKTK-IKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--DGKIT 362

Query: 581 SSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI               +   +   CNLGS+N+         D    A TI  A
Sbjct: 363 HSNLCSEILQVSTPSYFNEDLSYAKVGKDISCNLGSLNIAKT-----MDSPNFAQTIEVA 417

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E ++  +   
Sbjct: 418 IRALTAVSDQTHITSVPSIEQGNNESHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYF 477

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAM 738
             + +HA+ AS  ++ ERG  +  F+ S +  G F       + E + E          +
Sbjct: 478 YTVLYHALRASNRISIERGTHFKGFERSKYASGEFFDKYTEQIWEPKTEKVRRLFAAADI 537

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797
           +  ++  W  LK+ V+  G+ N N  A+ PT +I+ I   + SI P    + ++     G
Sbjct: 538 HIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEGKIG 597

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  ++ N+                                 + +  A+EI    +I
Sbjct: 598 RVYYPAPYMTND-------------------------------NLEYYQDAYEIGYEKII 626

Query: 858 ESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++ +   + +DQ  SL L ++D  + ++++     AW  G+KT YY+R
Sbjct: 627 DTYAAATQHVDQGLSLTLFFMDTATTREVNKAQIYAWRKGIKTLYYIR 674


>gi|325171198|ref|YP_004251299.1| ribonucleoside triphosphate reductase alpha chain [Vibrio phage
           ICP1]
          Length = 748

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 160/797 (20%), Positives = 301/797 (37%), Gaps = 79/797 (9%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++  +G  + F++ +L  + E A +    V    ++    K + D  S  D++ ALI S
Sbjct: 5   TVIKSNGQEVPFDASKLNRMAEWADNL--GVGWSSLVLNAIKKVSDKCSTLDIQNALIDS 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                  +  +  + AR  L  + +       ++P          LY  Y    I    K
Sbjct: 63  CAEKA--DKAHLAMAARLFLGTMYKNAHGGFEERP---------HLYDFYNNMLILGLWK 111

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                 S    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VA
Sbjct: 112 E----MSYDATELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVA 167

Query: 326 MGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           M +     E  +    V++Y  LS       TP L    ++   L+SC +    D    +
Sbjct: 168 MDIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSL 227

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+         + G+G      R +   +     K  G +P+ +    +  A  Q  +
Sbjct: 228 EAAIHNAYKQTVSNAGIGISLNC-RSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQEVR 286

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
             G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S
Sbjct: 287 G-GSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMS 345

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                +++  Y + ++   +        G  K ++ I AV + +  L    +TG  + T+
Sbjct: 346 QLHAPEVYKAYHENYDSLKQTLNDYILSG--KPYKTIKAVEVLKLYLKQRQDTGRMYSTW 403

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG----------SINLLAHFAN 613
            D  N  +P      ++SSNLC EI L +   +                 ++  L+    
Sbjct: 404 LDEANYHTPF--KEPIYSSNLCVEIFLPTKGFKDTGEMYTNDVENVQGEIALCFLSCIVA 461

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            +   ++        +  +DNVI +  +       S    R++G+G+     AL    + 
Sbjct: 462 GRVSEEEYEDVAYYTLLGVDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHALASKGLS 521

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y + E         E  S++   AS+ LA+E+G       + + +G  PID+     +  
Sbjct: 522 YKTLEGKNYMHRLAEMHSYYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYNKNVDRV 581

Query: 734 DELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                 +  R  W+ L+K  +   G+RNS   A  P  + + +   + S+ P  Q+  +K
Sbjct: 582 ----HTQKLRFDWESLRKDIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIK 637

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
              SG   V                             +     I ++LK  +  A+EI 
Sbjct: 638 --KSGTTKV-----------------------------VFAAPDI-ENLKGKYEYAYEIP 665

Query: 853 PMWLIESASRRQKWIDQAQSLNLY-------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
              +I+  +  QK+  Q  S +L+        ++    +L   +  A  MG+K+ YY  S
Sbjct: 666 TKDMIDCYAIFQKFHGQGISADLWKDYSKYENEKIPMSELLNDFYYATKMGMKSWYYQNS 725

Query: 906 RSATSVEKSTLKGVDGK 922
           +S    E ST++  +  
Sbjct: 726 KSGIKQEGSTIEPDESS 742


>gi|323978714|gb|EGB73796.1| ribonucleotide reductase [Escherichia coli TW10509]
          Length = 714

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 173/706 (24%), Positives = 288/706 (40%), Gaps = 60/706 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            L             +LG    Y  Y L     +  + + F  RV M         +  A
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKHYL-EDFADRVTMVALTLAQGDKTLA 145

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
            +  + + S  F  +TPT  N G R   +L SCFL  + D++  I  A+     L+K  G
Sbjct: 146 TQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGG 205

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D
Sbjct: 206 GVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPD 265

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK F
Sbjct: 266 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPF 322

Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            +IA   +  +    E    + I+A   ++++  + FE+G+P+I ++D  N  +P    G
Sbjct: 323 ADIAISEHYDELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AG 380

Query: 578 VVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+  AVR
Sbjct: 381 RINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVEIAVR 440

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +     
Sbjct: 441 GLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYT 500

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR---- 740
           I++HA+  S+ LA+ER   ++ FK S +  G +                 EL        
Sbjct: 501 ITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGNWQPKTAKVGELFARSGITL 560

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799
            +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G  
Sbjct: 561 PTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRV 620

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                F+ N                               +   ++  A+EI    +I++
Sbjct: 621 YYPAPFMTN-------------------------------ENLALYQDAYEIGAAKIIDT 649

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 650 YAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|71893571|ref|YP_279017.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae J]
          Length = 713

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 169/737 (22%), Positives = 296/737 (40%), Gaps = 99/737 (13%)

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            +    + E     ++       +       +L  L         F   ++G    Y  Y
Sbjct: 47  FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 106

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L  N + +   + F  RV +          ++A +    +    F  +TPT  N+G  +
Sbjct: 107 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 165

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +  SC+L  V D++  I  A+  +  L+K  GG+    + +R  GA I     ++ GV
Sbjct: 166 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 225

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 226 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 285

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542
           IP++  +    N    LFS   V D+  +Y K F      E Y +     EIK    ISA
Sbjct: 286 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISA 341

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597
             L++ +  + FE+G+P+I F+D  N      H   V  SNLC+EIT  S+         
Sbjct: 342 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLS 399

Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGS+N+     +   D++++      A+ V+    D++       +K N
Sbjct: 400 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 456

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + + AIGLG M     L    I Y S EA++  +     ++F A  AS +LA++ G +S 
Sbjct: 457 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 516

Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           F+ + +  G +      +             E+  +  +   ++  W  L +++K  G+ 
Sbjct: 517 FEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPTQKDWIHLVEKIKKTGIA 576

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS+ MAIAPT +I+ +   + S+ P    + ++         V S+              
Sbjct: 577 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 622

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                           ++     K +   A+E+ P+ +I   S  QK +DQA S+ L++ 
Sbjct: 623 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 666

Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +  + + L+  Y  A+    K+ YY+R R                               
Sbjct: 667 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 695

Query: 938 LGIPSSCTSDTECEVCQ 954
             +     +   C+ CQ
Sbjct: 696 QDVLEDSENYETCQSCQ 712


>gi|167992528|ref|ZP_02573626.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205329296|gb|EDZ16060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|312913830|dbj|BAJ37804.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 705

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + EG    
Sbjct: 6   DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDD 65

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        ++ L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 66  AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 125

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 126 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 182

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 183 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 242

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 243 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 302

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+   YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 303 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 359

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 360 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 416

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 417 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 472

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 473 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 532

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 533 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 592

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 593 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 621

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 622 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 681

Query: 900 TYYLR 904
            YY+R
Sbjct: 682 LYYIR 686


>gi|324020304|gb|EGB89523.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 117-3]
          Length = 701

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +    +                 EL       
Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682


>gi|302340448|ref|YP_003805654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637633|gb|ADK83060.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Spirochaeta smaragdinae DSM 11293]
          Length = 826

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 152/634 (23%), Positives = 263/634 (41%), Gaps = 61/634 (9%)

Query: 311 GSRIEM-PQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
              +E  P     RVA G+A++E   ++E+    F  LL  + F+     L  +GT    
Sbjct: 78  DKPLETTPAQMIKRVASGIAMEETKEKREEWTERFRWLLEDWRFVPGGRILTGAGTDQNL 137

Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
              +C++   P D   GI   L     +    GG+G + T +R   A++ G NG+S G +
Sbjct: 138 TYYNCYVIPSPEDSRGGIIKTLGHMTEIMSRGGGVGINLTSLRPHHAYVKGVNGRSSGSV 197

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            +  + +     + QGG R+GA+   L  WH D+ EF+  ++  G    +  + N +  I
Sbjct: 198 SWGALYSFVTGLIEQGGSRRGALMLILNVWHPDILEFISSKRQMG----QITNANISVGI 253

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FMK V ++  W L  PD     +D          +    +A    + V+RK+ A  +
Sbjct: 254 TDDFMKAVKEDLDWELVFPDTNYPGYDKEWDG-----DFVAWKAAGKPVNVYRKVKAREI 308

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   + +  P I F D  N  S   +   +  +N C E  L S      VCNLG++
Sbjct: 309 WNSIIESAWASAEPGIFFVDRYNAMSNSGYYARIQCTNPCGEQGLPS----WGVCNLGAV 364

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           NL      N  D+D L  T+R AVR LD+VID   +  E  K+   + R +GLG MG   
Sbjct: 365 NLSRFANGNDVDWDNLGRTVRYAVRFLDDVIDNTPYFFEANKEQQLSERRVGLGTMGLAE 424

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            +  L I Y S E+    D+   FI+  A  +S + A+E+G++  F+             
Sbjct: 425 LMIKLKIRYGSKESEAFLDKLYRFIAVEAYRSSSDTAKEKGSFPKFEA------------ 472

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                   +    +   +   +E+++++   G+RN   +  APT T   + G S  I+P 
Sbjct: 473 --------EPFLESGFMKGMPEEIRRKIAENGIRNVTLLTQAPTGTTGTMVGTSTGIEPY 524

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           Y   + +    G            +++  ++DE   ++ +             + L    
Sbjct: 525 YFWEWERRGRMGS----------NIERVGVYDEWRKANPEA------------EQLPDYF 562

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +A ++ P   ++  +  Q+W+D + S    +    S ++   +Y   + +G K     R
Sbjct: 563 VSAMDLSPEEHVKVQASIQRWVDSSISKTCNVPNQYSVEQTKQLYELMYDLGCKGGTIYR 622

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
             S      +  K  + K N V V          
Sbjct: 623 DGSRDEQVLNLKKEEEKKENPVEVKQIKPRVRPT 656


>gi|330466451|ref|YP_004404194.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
 gi|328809422|gb|AEB43594.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
          Length = 954

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/611 (20%), Positives = 226/611 (36%), Gaps = 28/611 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 106 GYFASPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILAVDDSMDSILD 165

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 166 WYKEEGLIFKGGSGSGVNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 224

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF+  +    D  R   D      +    +  V           
Sbjct: 225 RAAKMVILDVDHPDIEEFVVTKAREEDKIRALRDAGFDMDLGGADIVSVQYQNANNSVRV 284

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G  F++          R + +    I A  L+R +    +E   P + + 
Sbjct: 285 SDEFMTAVENGGGFDLR--------GRLDGQTIETIDAKKLFRTISQAAWECADPGLQYD 336

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
           D  N        G + +SN C+E        + + CNL S+NL+     +  F+ +K   
Sbjct: 337 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVK 392

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I       EK  ++   +R +G+G     + L    +PY S +   +A
Sbjct: 393 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSDQGRSLA 452

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                 ++  A   S ELA   GAY  +  +                E++       A+ 
Sbjct: 453 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGTVATAVV 512

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           R +   W +  K     G RNS    +APT TI  +    +  ++P    + + K    G
Sbjct: 513 REATRQWTQGNKIGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 572

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L+     +E + + +      G + +   +  +   +   A     I 
Sbjct: 573 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 632

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R       
Sbjct: 633 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 692

Query: 912 EKSTLKGVDGK 922
             S  K     
Sbjct: 693 PLSVAKPNKAA 703


>gi|320087213|emb|CBY96979.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 705

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 51  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 517

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686


>gi|312947210|gb|ADR28037.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O83:H1 str. NRG 857C]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 177/732 (24%), Positives = 296/732 (40%), Gaps = 73/732 (9%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254
           ++  L ++  +Y  + A   +  L        + K  +A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                + EG     +        ++ L             +LG    Y  Y L   +G R
Sbjct: 62  RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
               + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SCF
Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+    
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +NA   LFSP    D+  +Y K F   A   +  +    E    + ++A   ++++  
Sbjct: 300 AKENAQMALFSP---YDVERVYSKPFADVAISEHYDELVADERIRKKYLNARDFFQRLAE 356

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604
           + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  S
Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    +  D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M  
Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G + 
Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534

Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                           EL         +R  W +L+  V   G+ N N  A+ PT +I+ 
Sbjct: 535 SQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594

Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++    +G       F+ N                         
Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                 +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 684 WRKGIKTLYYIR 695


>gi|145224884|ref|YP_001135562.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           gilvum PYR-GCK]
 gi|145217370|gb|ABP46774.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 701

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 163/680 (23%), Positives = 283/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     IE+    R + +      +  L +    ++     ++G    Y  Y L   +G
Sbjct: 47  DEKLDYLIEKNYYEREVLDQYSRNFVKGLLDRAYAKKFRFPTFVGAFKYYTSYTLKTFDG 106

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + V++ LA  +      A +  + +    F  +TPT  NSG +   +  
Sbjct: 107 KRYLERFEDRVVMVSLTLASGD---TTLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEPV 163

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 164 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 223

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 224 LLEDSFSYANQLGARQGAGAVYLHAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDIT 283

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 284 FELAKKNEDMYLFSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 340

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I ++D  N  +P    G +  SNLC+EI               +   +
Sbjct: 341 LAELQFESGYPYIMYEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 398

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  ++R L  V D  +  ++   ++ N++  A
Sbjct: 399 DISCNLGSLNIAKA-----MDSPDFAQTIEVSIRALTAVSDQTHIWSVPSIEQGNNSSHA 453

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E V+  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 454 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYCVLYHALRASNRIAIERGTAFGGFEKS 513

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +    +  W +LK  V+  G+ N N  A+
Sbjct: 514 KYKSGEFFDKYTDQVWEPKTEKVRGLFADAGIRIPDQEDWKQLKASVQEHGIYNQNLQAV 573

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N                 
Sbjct: 574 PPTGSISYINHSTSSIHPIASKVEIRKEGKIGRVYYPAPYMTN----------------- 616

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +  + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 617 --------------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRD 662

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 663 VNKAQIYAWRKGIKTLYYIR 682


>gi|16766118|ref|NP_461733.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|585859|sp|Q08698|RIR3_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha;
           AltName: Full=R1E protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|49258467|pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258468|pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258469|pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|49258470|pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
           Typhimurium
 gi|109157244|pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|109157245|pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|1184247|emb|CAA51699.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421356|gb|AAL21692.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|267994923|gb|ACY89808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|321223604|gb|EFX48669.1| Ribonucleotide reductase of class Ib aerobic, alpha subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332989684|gb|AEF08667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + EG    
Sbjct: 15  DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDD 74

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        ++ L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 75  AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+   YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 312 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 542 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690

Query: 900 TYYLR 904
            YY+R
Sbjct: 691 LYYIR 695


>gi|62181311|ref|YP_217728.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62128944|gb|AAX66647.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715797|gb|EFZ07368.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 173/680 (25%), Positives = 284/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+   YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENVQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|216905874|ref|YP_002333502.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 9]
 gi|216410028|dbj|BAH02446.1| large subunit of ribonucleotide reductase [Equid herpesvirus 9]
          Length = 790

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 153/648 (23%), Positives = 265/648 (40%), Gaps = 53/648 (8%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK--------------EKRAVEFYNLLS 347
            + Y   + G RIE    FF+R+A        E+                    ++  L+
Sbjct: 141 EEMYLAKMRGGRIESMGQFFLRLATTATHYTMEQPAMARVVVSGEVGWTYIFKAYFTALA 200

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               + +TP +   G     ++SC+L    V D    +   ++E   +    GG+G    
Sbjct: 201 GQVIIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAMLALMEEAGPILCNRGGIGMSLQ 260

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
                        G S+GV+  LK+ +   +A+N  G+R   VC Y E WH D+   L++
Sbjct: 261 RFNT-----PPKEGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYFEPWHADIRAILNM 315

Query: 466 R-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           R     D+  R  ++    W PDLF  R  +           + D    +          
Sbjct: 316 RGMLARDETVRCDNIFACMWTPDLFFDRYKRYLDGESGVMWTLFDDTASHLCHMYGKEFE 375

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582
            E +           I    +   ++     TG P++ FKD CN       +    +  S
Sbjct: 376 EEYERLELCGFGVDSIPIQDMAFIIVRSAVMTGSPFLMFKDACNKHYHFDLRRKSAIMGS 435

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDN 634
           NLCTEI  ++   +  VCNL SINL    A           FD+  L     TA   +++
Sbjct: 436 NLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPYFDFAALGRAAATATIFVNS 495

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           ++  + +   K+++    +R++GLG+ G  +A  +L +  ASPEA ++  +  E +  ++
Sbjct: 496 MMRASTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEARQLNKQIAERLLLNS 555

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           + AS  L +     +  F+ S + +G  P D             +   +R  W  L+  +
Sbjct: 556 MKASATLCRLGMQPFKGFEDSKYSRGELPFD---------AYPGVTLANRNAWRRLRTEI 606

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ- 812
           K  G+ NS  +A  PT + + +   S+   P Y NL+ K   +G+    N  L+  ++  
Sbjct: 607 KQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSI 666

Query: 813 --RDLWDEAMISDLKYHDGSIGNIER-IP-DDLKKIHATAFEIDPMWLIESASRRQKWID 868
             R+      +S L+    S+      +P         TAFE D   LI+  + R  ++D
Sbjct: 667 FPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFKTAFEYDQKTLIDMCADRAPFVD 726

Query: 869 QAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           Q+QS++L++ EP        K+  +   A+  GLKT  YY + + AT+
Sbjct: 727 QSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKKATN 774


>gi|46981430|gb|AAT07701.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|94482187|gb|ABF21884.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482261|gb|ABF21957.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
          Length = 775

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 155/650 (23%), Positives = 273/650 (42%), Gaps = 62/650 (9%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLA---------------LKETEKEKRAVE-FYNL 345
            D Y   +   ++E    FF+R+A  +                + +          F+  
Sbjct: 131 EDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDGYTWTDVCRVFFTA 190

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF--GALQENAMLAKYSGGLGND 403
           L+    + +TP +   G      +SC+L        G        +   + +  GG+G  
Sbjct: 191 LACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITGDVGTVLQSRGGVGIS 250

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
              +      +  T  +++G++  LK+ +   +A+N   +R   VC Y+E WH+D++  L
Sbjct: 251 LQSLN-----LIPTENQTKGLLAVLKLLDCMVMAINSDCERPTGVCVYIEPWHVDLQTVL 305

Query: 464 DLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEVSDLHDLYGK 516
             R     D+  R  ++    W PDLF +R         N  WTLF  +    L  L+G+
Sbjct: 306 ATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLFD-NRADILRTLHGE 364

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F   Y   ER     E      +    +   ++     TG P++ FKD CN        
Sbjct: 365 AFTSTYLRLER-----EGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQ 419

Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLD 633
           G  +  SNLCTEI   + + +  VCNL SINL    +     F+ + L  T RT V  L+
Sbjct: 420 GNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLNDLQLTARTTVIFLN 479

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V+       +K+ K    +R++G+G+ G  +    L     S  A  +  +  E + + 
Sbjct: 480 GVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQIAELMLYE 539

Query: 694 AISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +  S+E+ +  G   +  F  S + +G    D            +      LPW  L+ 
Sbjct: 540 TMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQD----------GFSTISYLDLPWCTLRD 589

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +   G+ NS  +A+ PT + A +   S+   P Y N++ K   SG+    N  L++EL+
Sbjct: 590 DICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELR 649

Query: 812 QRDLWDE---AMISDLKYHDGSI-GNIERIPDDLKKI-HATAFEIDPMWLIESASRRQKW 866
                +E    +I+ L+ +  S+  +   + +    + + TAFE +   L++  + R  +
Sbjct: 650 DMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMCAERAPF 709

Query: 867 IDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           IDQ+QS+ L+++E         K+  +  +A+  GLKT  YY + R AT+
Sbjct: 710 IDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATN 759


>gi|9625894|ref|NP_040142.1| ribonucleotide reductase subunit 1 [Human herpesvirus 3]
 gi|132612|sp|P09248|RIR1_VZVD RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|259645275|sp|Q4JQV6|RIR1_VZVO RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           Short=R1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|60008|emb|CAA27902.1| ribonucleotide reductase (large subunit) [Human herpesvirus 3
           strain Dumas]
 gi|46981501|gb|AAT07777.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|66866037|gb|AAY57685.1| ORF19 [Human herpesvirus 3]
 gi|66866109|gb|AAY57756.1| ORF19 [Human herpesvirus 3]
 gi|83721827|emb|CAI44862.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|90992818|gb|ABE03037.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|91980320|gb|ABE67127.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481817|gb|ABF21519.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481891|gb|ABF21592.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481965|gb|ABF21665.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482039|gb|ABF21738.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482113|gb|ABF21811.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482335|gb|ABF22030.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482409|gb|ABF22103.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482483|gb|ABF22176.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482557|gb|ABF22249.1| large subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|111184727|gb|ABH08435.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
 gi|157965776|gb|ABW06922.1| ribonucleotide reductase large subunit [Human herpesvirus 3]
          Length = 775

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 155/650 (23%), Positives = 273/650 (42%), Gaps = 62/650 (9%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLA---------------LKETEKEKRAVE-FYNL 345
            D Y   +   ++E    FF+R+A  +                + +          F+  
Sbjct: 131 EDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDGYTWTDVCRVFFTA 190

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF--GALQENAMLAKYSGGLGND 403
           L+    + +TP +   G      +SC+L        G        +   + +  GG+G  
Sbjct: 191 LACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITGDVGTVLQSRGGVGIS 250

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
              +      +  T  +++G++  LK+ +   +A+N   +R   VC Y+E WH+D++  L
Sbjct: 251 LQSLN-----LIPTENQTKGLLAVLKLLDCMVMAINSDCERPTGVCVYIEPWHVDLQTVL 305

Query: 464 DLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEVSDLHDLYGK 516
             R     D+  R  ++    W PDLF +R         N  WTLF  +    L  L+G+
Sbjct: 306 ATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLFD-NRADILRTLHGE 364

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
            F   Y   ER     E      +    +   ++     TG P++ FKD CN        
Sbjct: 365 AFTSTYLRLER-----EGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQ 419

Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLD 633
           G  +  SNLCTEI   + + +  VCNL SINL    +     F+ + L  T RT V  L+
Sbjct: 420 GNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLNDLQLTARTTVIFLN 479

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            V+       +K+ K    +R++G+G+ G  +    L     S  A  +  +  E + + 
Sbjct: 480 GVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQIAELMLYE 539

Query: 694 AISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
            +  S+E+ +  G   +  F  S + +G    D            +      LPW  L+ 
Sbjct: 540 TMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQD----------GFSTISYLDLPWCTLRD 589

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            +   G+ NS  +A+ PT + A +   S+   P Y N++ K   SG+    N  L++EL+
Sbjct: 590 DICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELR 649

Query: 812 QRDLWDE---AMISDLKYHDGSI-GNIERIPDDLKKI-HATAFEIDPMWLIESASRRQKW 866
                +E    +I+ L+ +  S+  +   + +    + + TAFE +   L++  + R  +
Sbjct: 650 DMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMCAERAPF 709

Query: 867 IDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
           IDQ+QS+ L+++E         K+  +  +A+  GLKT  YY + R AT+
Sbjct: 710 IDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATN 759


>gi|308177565|ref|YP_003916971.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter
           arilaitensis Re117]
 gi|307745028|emb|CBT76000.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 712

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 177/674 (26%), Positives = 285/674 (42%), Gaps = 62/674 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     ++     R   +      +  L      ++     +LG    Y  Y L   +G
Sbjct: 60  DEKLEYLVKHEYYERETLDQYSMNFIRDLFKHAFGKKFRFETFLGAFKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +    RV M         EK A+   + +    F  +TPT  N+G     +L 
Sbjct: 120 KRYLERYED---RVCMVALHLARGDEKLALHLVDEIIEGRFQPATPTFLNAGKAQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+  +  L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIARAVNSSLQLSKRGGGVALSLTNLREHGAPIKQIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 LLEDSFSYANQLGARQGAGAVYLNAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDVT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
            +   +N    LFSP    D+  +YG  F      E Y    D   IK  + ISA   ++
Sbjct: 297 FELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYYDMVDDARIKKTK-ISAREFFQ 352

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----- 602
            +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   SS+ E +         
Sbjct: 353 TLAEIQFESGYPYIMFEDTVNKANPI--AGRITMSNLCSEILQVSSASEFSDDLSYKTVG 410

Query: 603 --GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLG 659
              S NL +       D   LA+++  A+R L  V D++   ++      N    AIGLG
Sbjct: 411 KDISCNLGSMNIAKAMDGKDLATSVDIAIRALSAVSDMSYIASVPSIADGNRKSHAIGLG 470

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQ 718
            M     L   HI Y S E ++  +     I FHA++AS ++A ER   + +F+ S +  
Sbjct: 471 QMNLHGFLAREHIYYGSEEGIDFTNIYFYTILFHALTASNKIAMERGETFDNFENSKYAS 530

Query: 719 GVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G F       + +     VR+    M+  ++  W  LK  V   G+ N N  A+ PT +I
Sbjct: 531 GEFFDKYTDQEWVPATERVRELFDGMHIPTQEDWKTLKASVMEHGIYNQNLQAVPPTGSI 590

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G       ++ NE                      
Sbjct: 591 SYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYMNNE---------------------- 628

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
            NI+         +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++    
Sbjct: 629 -NIDF--------YEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKAQI 679

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+K+ YY+R
Sbjct: 680 YAWRKGIKSLYYIR 693


>gi|301159372|emb|CBW18890.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|323131163|gb|ADX18593.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + EG    
Sbjct: 15  DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDD 74

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        ++ L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 75  AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+   YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 312 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLHDD 541

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 542 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690

Query: 900 TYYLR 904
            YY+R
Sbjct: 691 LYYIR 695


>gi|256784770|ref|ZP_05523201.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
 gi|289768657|ref|ZP_06528035.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
 gi|289698856|gb|EFD66285.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           lividans TK24]
          Length = 967

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/632 (18%), Positives = 225/632 (35%), Gaps = 32/632 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E+F+  +    +  R   D      +    +  V           ++       
Sbjct: 243 VDHPDIEDFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVQ 302

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G +F            R   +V  ++ A AL+RKM    +    P I + D        
Sbjct: 303 DGGKF--------GLTSRMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTIKAWHTC 354

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+         N  FD ++ +  +   
Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFDAERFSKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  +   S ELA   G Y  +  +               A+      ++      +  
Sbjct: 471 LMTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RNS    IAPT TI       +  ++P    + + K    G   +V
Sbjct: 531 AWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +     +G++ +   +  +  ++   A     I  M  +
Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKPEHYEVFDCAMGERSISAMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R         S  
Sbjct: 651 RMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 710

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                      +T+   +     +        
Sbjct: 711 TKTVKDTEKAEITEKTEAAIRETVEKVVEYRP 742


>gi|194737455|ref|YP_002115763.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197301107|ref|ZP_02663780.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194712957|gb|ACF92178.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288514|gb|EDY27891.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|312162815|ref|YP_003933800.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1]
 gi|308096448|gb|ADO13788.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1]
          Length = 1048

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 171/658 (25%), Positives = 274/658 (41%), Gaps = 62/658 (9%)

Query: 291  FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKETE----------KEK 337
            +A +  GLQ        Y       R+E     + R+A  LA    E          +  
Sbjct: 398  YALKNRGLQSALKYEEFYLRPWGNGRLESVSQMYTRIAGALATGAREIPEIGTVALGRTG 457

Query: 338  RAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQENA 391
              ++    F++ L S   + STP +   G R    SSC+L      D    I        
Sbjct: 458  EWIDLFAYFFDALVSHAIVPSTPAMLYLGGRQRYTSSCYLVNPQRTDSAGVIDAITHNVG 517

Query: 392  MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
             +    GG+G       G              V+P LK+ +    A N G  R   VC Y
Sbjct: 518  DILARHGGIGLSIQSFNG-----------GSSVMPALKLLDSLVAAHNAGSHRPTGVCVY 566

Query: 452  LETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSP 504
            LE WH DV   L +R     ++ RR  ++ +A W+PDLF KR+       +   WTLF  
Sbjct: 567  LEPWHTDVMAVLRMRGLLAGEEARRCDNIFSAMWMPDLFFKRLIRYMEGERGVMWTLFDG 626

Query: 505  DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               S L   +G EFE  YE  E            ++    L   ++     TG P++ FK
Sbjct: 627  AAGSALSAHHGAEFERLYEKMEEAG----GSALTRLPIQDLAFAIVRSAASTGSPFVMFK 682

Query: 565  DPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
            D CN        G  +  SNLCTEI   + +  + VCNL S+NL     +  F +++L  
Sbjct: 683  DACNRHYLYDTQGSAISCSNLCTEIVHPADARSSGVCNLASVNLAECVEDGAFSFERLRR 742

Query: 624  TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             +R  V +++ +ID      ++ ++ +   R++G+G+ G  +A   L +  +SPE  E+ 
Sbjct: 743  AVRACVLMVNVMIDTTRTPNQRCQRGHDRLRSMGIGMQGLHTACLRLGLDMSSPEFRELN 802

Query: 684  DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
             E  E +   A+ AS +L       ++ FK S++ +G F  +                  
Sbjct: 803  AEIAEVMLLAAMQASNDLCVAGLPPFADFKRSVYSEGRFHWE---------GFAHARPKH 853

Query: 743  RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
               W  L++RV   G+RNS  +A+ PT + + +   S+   P + N++ K   +G+    
Sbjct: 854  SDEWARLRQRVVRHGLRNSQFIALMPTVSSSQVSESSEGFAPVFTNMFSKVGRAGETLRP 913

Query: 803  NSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIE 858
            N  L+  + +       E  +  L+     +      + PD   +   TAFE D   LI+
Sbjct: 914  NLLLLEAVHEAFGGAALERALDRLEDAQWCVARAFPCLAPDHPLRRFKTAFEYDQTLLID 973

Query: 859  SASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
              + R  ++D +QS+ LY+ E S        L  +   A+  GLKT  YY + R AT+
Sbjct: 974  LCADRAPYVDHSQSMTLYVTEASDGTLPASALTRLLVHAYKRGLKTGMYYCKVRKATN 1031


>gi|207858076|ref|YP_002244727.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|206709879|emb|CAR34232.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + EG    
Sbjct: 15  DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 74

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        ++ L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 75  AVLARYNRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
            +V      YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 312 YDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 542 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690

Query: 900 TYYLR 904
            YY+R
Sbjct: 691 LYYIR 695


>gi|56414766|ref|YP_151841.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197363694|ref|YP_002143331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205360153|ref|ZP_02834878.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|56129023|gb|AAV78529.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197095171|emb|CAR60720.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|205340774|gb|EDZ27538.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|209920119|ref|YP_002294203.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SE11]
 gi|293448993|ref|ZP_06663414.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|331678653|ref|ZP_08379327.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
 gi|209913378|dbj|BAG78452.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia
           coli SE11]
 gi|291322083|gb|EFE61512.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|324120034|gb|EGC13911.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|331073483|gb|EGI44804.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli H591]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M            
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +    +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|294505969|ref|YP_003570027.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter
           ruber M8]
 gi|294342297|emb|CBH23075.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter
           ruber M8]
          Length = 560

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/630 (25%), Positives = 248/630 (39%), Gaps = 113/630 (17%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
                   L   Y L   G     P+     +A             A  FY  ++  ++ 
Sbjct: 18  LNDEARTFLRRGYLLEGTG-----PEDRVREIAEHAEGLLEMD-GFADRFYEYMARGYYS 71

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++P   N G       SCF + + D +  I     E  M+ K  GG    +  VR  GA
Sbjct: 72  LASPVWANFGLDRGLPISCFGSYIDDSMEAILDTHAEVGMMTKVGGGTSGYFGDVRPRGA 131

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I   NG S G  PF ++ +     V+QG  R+G    Y++  H DVEE+L+++     +
Sbjct: 132 SI-TNNGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYIDIEHPDVEEWLNIQT----E 186

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                 M     + D +M+ +                                       
Sbjct: 187 GDAIQTMMYGVVVGDDWMEAMIDGDS---------------------------------- 212

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEIT 589
                      ALW K++      G P+I F+       PQ +      VH+SNLC+E+ 
Sbjct: 213 --------DKRALWAKVVESRMNLGIPYILFRGNVQDGRPQVYKDKGYDVHASNLCSEVL 264

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TI 643
           L S  +E+ VC L S+N L       +D  K    + T  + LD V+            +
Sbjct: 265 LPSGPDESFVCCLSSMNAL------HYDDWKDTDAVETLTQFLDAVMQEFIDGAKGMAHM 318

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++A +    HRAIG+G++G+ S L    IP+ S EA     E  + I   + +AS ELA 
Sbjct: 319 DRAVRFAERHRAIGIGILGWHSYLQSNRIPFESAEASLTGAEIAKTIKERSYAASAELAD 378

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             G     +G                                           G RN+  
Sbjct: 379 RFGEPPVLEG------------------------------------------YGRRNATT 396

Query: 764 MAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           MA+APT + + I G VS SI+P   N +V+       T  N  L   L+++    +A+  
Sbjct: 397 MAVAPTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVTYKNPHLKALLQEKGRDTDAVWD 456

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EP 880
           ++   DGS+ +++ + D+ K +  T  EI  M +I+ A+ RQK IDQ+QSLNL +D    
Sbjct: 457 EIALRDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQAAGRQKHIDQSQSLNLAIDPGST 516

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             K ++ +Y +AW  G+K+ YY    +A  
Sbjct: 517 PVKDINRLYVEAWKKGVKSLYYQHGVNAAQ 546


>gi|218701170|ref|YP_002408799.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli IAI39]
 gi|218371156|emb|CAR18987.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli IAI39]
          Length = 714

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFHDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|257373021|ref|YP_003175795.1| ribonucleotide-diphosphate reductase subunit alpha [Halomicrobium
           mukohataei DSM 12286]
 gi|257167745|gb|ACV49437.1| ribonucleoside-diphosphate reductase, alpha chain [Halomicrobium
           mukohataei DSM 12286]
          Length = 564

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 157/636 (24%), Positives = 261/636 (41%), Gaps = 112/636 (17%)

Query: 302 YDRYFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
            D       G  IE    +     +A     +  + +  A +FY+ +S   +  ++P   
Sbjct: 24  EDSRAFLDEGYLIEGVTAEERVREIAERAE-EILDDDGFADKFYDYMSRGFYSLASPVWS 82

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           N G       SCF + + D++  I     E   + K  GG    +  +R  G+ I   NG
Sbjct: 83  NFGLDRGLPISCFGSYMEDNMESILYTQAEVGEMTKLGGGTSGYFGEIRPRGSPI-TNNG 141

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           KS G   F ++ +     V+QG  R+G    Y++  H D++E+L+++     +     D+
Sbjct: 142 KSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDVEHDDLDEWLNIKT----EGDPVQDI 197

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
                I D + + +                         E                    
Sbjct: 198 YYGVIIGDDWFRAMVDGDE--------------------EKR------------------ 219

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEE 596
                 W +++      G P+I F+D  N   PQ +      ++ SNLCTEI L ++ +E
Sbjct: 220 ----ETWAEIIETRINIGVPYIIFRDNMNDGKPQVYKDRGYEINGSNLCTEIALPATPDE 275

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAKKSN 650
           + VC L S+N L       +D  K    + T  R LD VI+           +E+  +  
Sbjct: 276 SFVCCLSSMNAL------HYDEWKDTDAVETLTRFLDAVIEEFIQEAEGTQFMERPVRFA 329

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             HRA+G+G++G+ S L    IP+ S EA+E  +     I   +   S  LA E G    
Sbjct: 330 KRHRAVGIGVLGWHSYLQSEMIPFDSMEAMEKNEAIFRTIKERSYEESRRLADEFGEPEV 389

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            +G                                           G RN+  M++APT 
Sbjct: 390 LEG------------------------------------------YGRRNATTMSVAPTK 407

Query: 771 TIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           + + I G VS SI+P   N +V+       T  N FL   LK+R   +  +   +  +DG
Sbjct: 408 SSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKERGRDEREVWDSIAQNDG 467

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDF 887
           S+ +++ + D+ K++  T  EI  M +I  A++RQK IDQAQSLN+ +   E S K+++ 
Sbjct: 468 SVQHLDCLTDEEKEVFKTFAEIPQMAIINQAAQRQKHIDQAQSLNVSIDPSEVSVKEINQ 527

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           +Y +AW  G+K+ YY  S +A   +K +   ++ K 
Sbjct: 528 LYIEAWKKGVKSLYYQHSVNA--AQKFSRDILECKA 561


>gi|9629835|ref|NP_045319.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 1]
 gi|1710388|sp|P50646|RIR1_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|995643|emb|CAA90929.1| UL39 [Bovine herpesvirus 1]
 gi|1149579|emb|CAA88900.1| UL39 [Bovine herpesvirus 1]
 gi|2653308|emb|CAA06094.1| ribonucleotide reductase large subunit [Bovine herpesvirus type
           1.1]
          Length = 787

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 159/654 (24%), Positives = 265/654 (40%), Gaps = 59/654 (9%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALK-------------ETEKEKRAVEFY-NLLS 347
            + Y   + G  IE    FF+R+A   A               E          Y   L 
Sbjct: 142 EEMYLAKLEGGAIESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAVFNAYLTALY 201

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               + +TP +  +G     L+SC+L    V      +     E A +    GG+G  + 
Sbjct: 202 RQLVVPATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLNRGGIGISFQ 261

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
                 +          G++  LK+ +  A+A+N   +R   +C YLE WH DV   L++
Sbjct: 262 SFDRAVSRDCKR-----GIMGALKLLDSMAMAINSDSERPTGICVYLEPWHCDVRAVLNM 316

Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQN-----AGWTLFSPDEVSDLHDLYGKEFE 519
           R     D+  R  ++ +  W+PDL   R   +             D  S L  L+G  F 
Sbjct: 317 RGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLFDDRASHLSRLHGPAFT 376

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578
             YE  ER     E      +    L   ++  +  TG P++ FKD CN        G  
Sbjct: 377 AEYERLER-----EGLGVETVPVQDLAFLIVRSIVMTGSPFVMFKDACNRHYHMDTAGDA 431

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLD 633
           +  SNLCTEI   +S +   VCNL S+NL       +     FD+  L++   TA   ++
Sbjct: 432 LTGSNLCTEIVQRASPDAHGVCNLASVNLPRCVREGEGGALAFDFAALSTAAATAAIFVN 491

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            ++    +  EKA +    HR++G+G  G  + L  L +   SP A  +  E  E +   
Sbjct: 492 AMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLNVEIAERLLLA 551

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            ++ S  L +     +  F  S + +G+ P D             +  +    W  L+++
Sbjct: 552 VMATSATLCEYGCAPFEDFARSKFARGLMPFD---------GYEGVVLSLPRAWARLREK 602

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ N+  +A+ PT + + +   S+   P + N++ K  MSG+    N  L+  L++
Sbjct: 603 VARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLPLMRALRK 662

Query: 813 RDLWDEAM---ISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
               + +    +  L     S+     +  P        TAFE D   LI+  + R  ++
Sbjct: 663 HFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERLIDLCADRAPFV 722

Query: 868 DQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           DQ+QS++L++ EP        ++  +   A+  GLKT  YY + R AT+    T
Sbjct: 723 DQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNNGVFT 776


>gi|90962207|ref|YP_536123.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius UCC118]
 gi|90821401|gb|ABE00040.1| Ribonucleoside-diphosphate reductase alpha chain [Lactobacillus
           salivarius UCC118]
          Length = 723

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 285/712 (40%), Gaps = 76/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            E L     +  K    +   +  E     I+                +  L + LK E 
Sbjct: 34  EEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L  
Sbjct: 92  DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150

Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           RG GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E    
Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+E
Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386

Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I          + +E  V     S NL +    N         ++    R L  V D  +
Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  + L    I Y SPEA+E        +++  + AS 
Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750
           ++A+ER   + +F+ S +  G +    +          + E+ D + +   ++  W  LK
Sbjct: 507 KIAKERKVTFDNFENSKYADGRYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809
           + V   G+ + N +A+AP  +I+ I   + S+ P    +  +     G       +L N 
Sbjct: 565 ENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                         +    + +A++ D   +I++ +  Q+ +DQ
Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653

Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++                   + + L  +   A   G+K+ YY+R+
Sbjct: 654 GMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|323529940|ref|YP_004232092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1001]
 gi|323386942|gb|ADX59032.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1001]
          Length = 859

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 142/611 (23%), Positives = 249/611 (40%), Gaps = 76/611 (12%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
                F RVA G+A  E    + +VE  F + L                     L +CF+
Sbjct: 46  SADDVFRRVARGVAEAEPAALRESVEALFVDNLRHGALGAGRIMSAAGTGIAATLINCFV 105

Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D + G        I+ AL + A   +  GG+G +++ +R  GA +  T+  + G  
Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVRTTSSSASGPC 165

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  +
Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V ++  W L    E S      G            +     + V+ +  A  +
Sbjct: 222 TDEFMRAVEEDEPWQLVHRAEPSPALRAAGDV----------RQREDGMWVYSERPAREI 271

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W +++   ++   P I F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 272 WERIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 327

Query: 606 NLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL     +           FD+D LA   RT VR LDNV+D+    + +    +   R I
Sbjct: 328 NLTRFVLDPFAQMKGGKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRI 387

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F  + +
Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAARY 447

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                              L     +    +++K+ ++  G+RNS+ ++IAPT T++   
Sbjct: 448 -------------------LETGTFASRLPEDIKEAIRRDGIRNSHLLSIAPTGTVSLAF 488

Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               S  I+P++   Y +             ++ +  +     E     L    G  G++
Sbjct: 489 ADNASNGIEPAFSWTYTRMK-----------VMADGGRESFDVEDYAYRLYRELG--GDV 535

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
            R+PD       +A E+     ++  +  Q ++D + S  + +  +   +  + +Y  AW
Sbjct: 536 NRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPFEAFESLYLDAW 591

Query: 894 LMGLKTTYYLR 904
             GLK     R
Sbjct: 592 KSGLKGLATYR 602


>gi|261247948|emb|CBG25781.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
          Length = 714

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 177/725 (24%), Positives = 294/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + E     
Sbjct: 15  DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREEYYDD 74

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        ++ L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 75  AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+   YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 312 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 542 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690

Query: 900 TYYLR 904
            YY+R
Sbjct: 691 LYYIR 695


>gi|197264971|ref|ZP_03165045.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243226|gb|EDY25846.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 705

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 294/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + EG    
Sbjct: 6   DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 65

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        +  L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 66  AVLARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 125

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 126 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 182

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 183 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 242

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 243 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 302

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+   YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 303 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 359

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 360 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 416

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 417 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 472

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 473 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 532

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 533 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 592

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 593 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 621

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 622 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 681

Query: 900 TYYLR 904
            YY+R
Sbjct: 682 LYYIR 686


>gi|152971533|ref|YP_001336642.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956382|gb|ABR78412.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 693

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 273/637 (42%), Gaps = 68/637 (10%)

Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            +LG    Y  Y L        +E      + VA+ LA  +   E++A +    + S  F
Sbjct: 80  TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLARGD---EQQARQLTEEILSGRF 136

Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N+G +   +L SCFL  + D++  I  A+     L+K  GG+    + +R  
Sbjct: 137 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 196

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GV+P +K+  D     NQ G R+GA   +L   H D+  FLD R+   
Sbjct: 197 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 256

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529
           D++ R   ++    IPD+  +   ++A   LFSP    D+  LYGK F   A  +   Q 
Sbjct: 257 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 313

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579
              E    R I A  L++++  + FE+G+P+I F+D  N  SP             +  V
Sbjct: 314 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 373

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
            + +   E    +   E   CNLGS+N+         D      TI TAVR L  V D+ 
Sbjct: 374 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 428

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++      N    AIGLG M     L    I Y SPE ++  +     +++HA+  S
Sbjct: 429 HIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 488

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749
           ++LA+ER   ++ F+ S +  G +    +    + + E          ++   R  W +L
Sbjct: 489 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQL 548

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V   G+ N    A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 549 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 608

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                  ++  A+EI P  +I++ +   + +D
Sbjct: 609 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 637

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 638 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 674


>gi|281413956|ref|ZP_06245698.1| ribonucleotide-diphosphate reductase subunit alpha [Micrococcus
           luteus NCTC 2665]
          Length = 693

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 175/679 (25%), Positives = 281/679 (41%), Gaps = 79/679 (11%)

Query: 258 RYIEEGVKARLLHESMMDFDLVY--LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313
            Y+++             F+ V        K +  F F  +LG    Y  Y L   +G R
Sbjct: 43  DYLQKNDYYETETFEQYPFEFVRGLFDRAYKAK--FRFPTFLGAFKFYTSYALKTFDGKR 100

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +     VA+ LA  + E     V   + + +  F  +TPT  NSG +   +L SC
Sbjct: 101 YLERYEDRVAVVALHLARGDQELATHLV---DEMIAGRFQPATPTFLNSGKKQRGELVSC 157

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    T +R  GA I     +S GVIP +K+ 
Sbjct: 158 FLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLL 217

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 218 EDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 277

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
              +N    LFSP    D+  +YG  F      E Y    D   IK  + ISA   ++ +
Sbjct: 278 LAKKNEDMYLFSP---YDVERVYGVPFSEISVTEKYYEMVDDARIKKTK-ISAREFFQTI 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P++ F+D  N  +P    G +  SNLC+EI               +   + 
Sbjct: 334 AEIQFESGYPYVVFEDTVNAANPI--KGRITMSNLCSEILQVSEASEYNEDLSYAHVGQD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      ++ TA+R L  V  + +  ++    K N    AI
Sbjct: 392 ISCNLGSMNIAKT-----MDSPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L   H+ Y S E ++  +     + FHA+ AS  +A E    +  F+ S 
Sbjct: 447 GLGQMNLHGYLAREHVHYGSEEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSK 506

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F               +AE+  +  +   ++  W ELK  V   G+ N N  A+ 
Sbjct: 507 YASGEFFDKYTDQEWAPATERVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       +L N                  
Sbjct: 567 PTGSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTN------------------ 608

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                        +  + +  A+EI    +I++ +   + +DQ  SL L+  +  + + L
Sbjct: 609 -------------ENLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDL 655

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 656 NRAQIYAWRKGIKTIYYIR 674


>gi|170683654|ref|YP_001744826.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli SMS-3-5]
 gi|170521372|gb|ACB19550.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli SMS-3-5]
          Length = 714

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 171/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ +           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASDYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMN 739
            I++HA+  S+ LA+ER   ++ FK S +  G +    +    + +            + 
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGVT 559

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMCYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|222034375|emb|CAP77116.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia
           coli LF82]
          Length = 701

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 170/673 (25%), Positives = 280/673 (41%), Gaps = 60/673 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           +     + EG     +        ++ L             +LG    Y  Y L   +G 
Sbjct: 48  QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           R    + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SC
Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+   
Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550
              +NA   LFSP    D+  +Y K F   A   +  +    E    + ++A   ++++ 
Sbjct: 286 LAKENAQMALFSP---YDVERVYSKPFADVAISEHYDELVADERIRKKYLNARDFFQRLA 342

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603
            + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  
Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    +  D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M 
Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 460

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +
Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520

Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                            EL         +R  W +L+  V   G+ N N  A+ PT +I+
Sbjct: 521 FSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580

Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++    +G       F+ N                        
Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     
Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 670 AWRKGIKTLYYIR 682


>gi|225869035|ref|YP_002744983.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702311|emb|CAX00108.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           equi subsp. zooepidemicus]
          Length = 724

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 165/748 (22%), Positives = 305/748 (40%), Gaps = 78/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  ++    +      + + ++     +         ++
Sbjct: 29  KEAVQRYLEEHVYPQSLSFDSLEEKW-RYLVAHDYYDQEILKAYSAECITEAFTYAYQQK 87

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                 +G    Y  Y L        + + F  R  M              +  + + S 
Sbjct: 88  FSFLSLMGAMKFYQSYALKSLDGSQYL-EHFEDRAVMNALFLANGDPDLVRDLIDQILSR 146

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N+G +   +  SC+L  + D++  I  A+  +  L+K  GG+    T +R
Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLR 206

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H ++  FLD ++ 
Sbjct: 207 EVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFLDTKRE 266

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+        E  
Sbjct: 267 NADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAITEEYD 323

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  + +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  SNLC+E
Sbjct: 324 RLVANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   S++             E   CNLGSIN+     +    +++L +T   A+  +   
Sbjct: 384 IAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAAG-FEQLIATSIRALDHVSRA 442

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            D++C      +K N  + A+GLG M     L   HI Y S EAV+  D     ++++A 
Sbjct: 443 SDVSCA--PSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSAEAVDFTDLFFHTMAYYAF 500

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747
            AS +LA+E+GA++ F+ S +  G +    +   A+ +         R          W 
Sbjct: 501 KASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYGFRVPSVADWQ 560

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL   ++  G+ N++ MA+APT +I+ +   + S+ P    + V+         V ++  
Sbjct: 561 ELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHLGRIYVPAY-- 618

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866
                                       +I DD    +   A+E+ P  +I   +  QK 
Sbjct: 619 ----------------------------QISDDNYAYYERGAYEVGPEPIINIVAAAQKH 650

Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ +  + + L+  Y  A+ +   + YY+R R                 + 
Sbjct: 651 VDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR----------------QDV 694

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +  ++       +    +  S   C+ C
Sbjct: 695 LEGSEQYEEDTIVPFTDTNASGEACQSC 722


>gi|205360490|ref|ZP_02684058.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349046|gb|EDZ35677.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 714

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 284/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        +  L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP    D+   YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|168464073|ref|ZP_02697990.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|238909578|ref|ZP_04653415.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|195633333|gb|EDX51747.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 705

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 51  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 517

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686


>gi|257069612|ref|YP_003155867.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Brachybacterium faecium DSM 4810]
 gi|256560430|gb|ACU86277.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Brachybacterium faecium DSM 4810]
          Length = 710

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 169/680 (24%), Positives = 284/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +E       + E      +  L+     ++     +LG    Y  Y L   +G
Sbjct: 56  REKMDYLVENKYYEADVLEQYDFSFIESLSEQAYAKKFRFPTFLGAFKYYTSYTLKTFDG 115

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+GLA  +   E+ A    + +    F  +TPT  N+G     +L 
Sbjct: 116 ERYLERFEDRVVMVALGLAQGD---EQLARNLVDEILDGRFQPATPTFLNAGKAQRGELV 172

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 173 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREYGAPIKHIENQSSGVIPVMK 232

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 233 LLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 292

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRK 548
            +   QN    LFSP    D+   YGK F     +   R+         +KI A   ++ 
Sbjct: 293 FELAKQNEPMYLFSP---YDVEREYGKPFADVNVSEVYREMVDNPNISKKKIQARDFFQN 349

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G V  SNLC+EI                    
Sbjct: 350 LAEIQFESGYPYIMFEDTVNRANPI--AGKVTHSNLCSEILQVSTPSSMNVDLTYDEMGR 407

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A +I TA+R L  V D  +  ++    + N    A
Sbjct: 408 DISCNLGSLNIAKA-----MDSPDFAQSIETAIRGLTAVSDTSDIESVPTIAEGNRKSHA 462

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    + Y S E ++  +     +++HAI AS+++A+ER   +  F+ S
Sbjct: 463 IGLGQMNLHGYLARERVFYGSEEGLDFTNMYFYSVTYHAIKASMKIAKERGEKFYDFENS 522

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    I  + E +         +   +  ++  W +L+  V   GM N+   A+
Sbjct: 523 KYATGEYFDKYIDQVWEPKTEKVRGLFADSNAHLPTQEDWKQLRDEVAEHGMYNAYLQAV 582

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 583 PPTGSISYINHSTSSIHPIVSQIEIRKEGKIGRVYYPAPYMTND---------------- 626

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ ++  + +DQ  SL L+  +  + + 
Sbjct: 627 ---------------NLEYYEDAYEIGYEKIIDTYAQATQHVDQGLSLTLFFKDTATTRD 671

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 672 VNRAQIYAWRKGIKTLYYIR 691


>gi|25028979|ref|NP_739033.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           efficiens YS-314]
 gi|23494266|dbj|BAC19233.1| ribonucleotide reductase alpha chain [Corynebacterium efficiens
           YS-314]
          Length = 721

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 158/681 (23%), Positives = 272/681 (39%), Gaps = 74/681 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LH 308
            E     +E     + +   +  +D  Y+ +  K    + F +      Y  Y       
Sbjct: 67  HEKLDYLVENNYYEKEV---LDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKT 123

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +    RV M          + A    + + +  F  +TPT  NSG     
Sbjct: 124 FDGRRYLERFED---RVCMVALTLADGDRETANALVDEIMTGRFQPATPTFLNSGKAQRG 180

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +  SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP
Sbjct: 181 EPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIP 240

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 241 VMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIP 300

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545
           D+  +   +N    LFSP    D+  +YGK F              + ++ +  I+A   
Sbjct: 301 DITFELAKRNDDMYLFSP---YDVERIYGKPFADISVTELYNEMVDDDRIRKTKINARQF 357

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSE 595
           ++ +  + FE+G+P+I F+D  N  +P             +  V + +   E        
Sbjct: 358 FQTLAEIQFESGYPYIMFEDTVNEANPIEGRVTHSNLCSEILQVSTPSTYHEDLSYDEVG 417

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
           E   CNLGS+N+         D    + TI TA+R L  V +  +  ++   +K N    
Sbjct: 418 EDISCNLGSLNIAMAM-----DSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAH 472

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           AIGLG M     L   HI Y S E ++  +     + +  + AS ++A+ER   +++F+ 
Sbjct: 473 AIGLGQMNLHGYLGREHIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFEN 532

Query: 714 SLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  GV+               + E+     ++  +   W +LK  V   G+ N    A
Sbjct: 533 SDYASGVYFDRFDPAEFAPKTDKVKELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQA 592

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824
           + PT +I+ I   + SI P    + ++     G        + N+               
Sbjct: 593 VPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND--------------- 637

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                             +    A+EI    +I++ +   K++DQ  SL L+  +  + +
Sbjct: 638 ----------------NLEYFQDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTR 681

Query: 884 KLDFIYRQAWLMGLKTTYYLR 904
            ++     AW  G+KT YY+R
Sbjct: 682 DINRAQIYAWRKGIKTLYYIR 702


>gi|15827932|ref|NP_302195.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           leprae TN]
 gi|221230409|ref|YP_002503825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           leprae Br4923]
 gi|13093485|emb|CAC30687.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium
           leprae]
 gi|219933516|emb|CAR71829.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium
           leprae Br4923]
          Length = 693

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 170/708 (24%), Positives = 286/708 (40%), Gaps = 75/708 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           +  ++VL       Q    + +      E     I E    R + +      +  L +  
Sbjct: 12  QFDKDVLAARQFFLQHVNQNTVFFHNQDEKLDYLIRENYYEREVLDQYSRNFVKSLLDRA 71

Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     +LG    Y  Y L   +G R  E  +     VA+ LA  +      A +  
Sbjct: 72  YAKKFRFSTFLGAFKYYTSYTLKTFDGKRYLERLEDRVCMVALTLAAGD---TGLAEKLV 128

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  NSG +   +  SCFL  + D++  I  ++     L+K  GG+  
Sbjct: 129 DEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAL 188

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  F
Sbjct: 189 LLSNIREHGAPIKNIEHQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRF 248

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEI 520
           LD ++   D++ R   ++    IPD+  +   +N    LFS  +V  ++++         
Sbjct: 249 LDTKRENADEKIRIKTLSLGVIIPDITFELAKRNEDMYLFSSYDVERVYEVPFADISVTE 308

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y      A   + K    I A   ++K+  + FE+G+P++ F+D  N  +P    G + 
Sbjct: 309 KYYEMLDDARIRKTK----IKAREFFQKLAELQFESGYPYVMFEDTVNRANPI--EGKIT 362

Query: 581 SSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI               +   +   CNLGS+N+         D    A T+  A
Sbjct: 363 HSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIAKT-----MDSPDFAQTVEVA 417

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D  +  ++   ++ N+   AIGLG M     L    I Y S E V+  +   
Sbjct: 418 IRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLSREGIFYGSEEGVDFTNIYF 477

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAM 738
             + FH + AS  +A ERG  +  F+ S +  G F    I    E +         E A+
Sbjct: 478 YTVLFHVLLASNSIAIERGTFFKGFERSKYASGEFFDKYIEQTWEPKTDKVRQLFAEAAI 537

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797
              ++  W  LK+ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G
Sbjct: 538 RIPTQNDWKRLKELVVAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEGKIG 597

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  ++ N+                                 + +  A+EI    +I
Sbjct: 598 RVYYPAPYMTND-------------------------------NLQYYQDAYEIGYQKII 626

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 627 DTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674


>gi|168233768|ref|ZP_02658826.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470517|ref|ZP_03076501.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194456881|gb|EDX45720.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332204|gb|EDZ18968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 705

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 51  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNIYFYTITWHAVHTSMRLARERGKTFAGFAQS 517

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686


>gi|259907589|ref|YP_002647945.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|224963211|emb|CAX54695.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           pyrifoliae Ep1/96]
 gi|283477431|emb|CAY73347.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia
           pyrifoliae DSM 12163]
          Length = 716

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 163/638 (25%), Positives = 269/638 (42%), Gaps = 60/638 (9%)

Query: 289 RDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           R     +LG    Y  Y L   +G R    + F  RV M         +  A+   + + 
Sbjct: 98  RFRFQTFLGAWKFYTSYTLKTFDGKRY--LEGFTERVCMVALTLAKGDQPLALALTDEIL 155

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 156 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 215

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 216 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDTK 275

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   ++    IPD+  +    N    LFSP +V  ++ L    F     + +
Sbjct: 276 RENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYAL---PFADISMSEK 332

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                 + ++ R  I+    ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC
Sbjct: 333 YPEMLADTRIRRTFINPREFFQTLAEIQFESGYPYIMFEDTVNRANPVP--GRINMSNLC 390

Query: 586 TEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI   +S  E              S NL +    +  D    A T+  AVR L  V D 
Sbjct: 391 SEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNVAHAMDSADFARTVEIAVRGLTAVSDQ 450

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            + H++   ++ N    AIGLG M     L    I Y S   ++  +     +++HA+  
Sbjct: 451 SHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVTYHALRT 510

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDE 748
           S +LA+ER   +S F  S +  G +    +G     R            +   S+  W  
Sbjct: 511 SNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPSQQQWQA 570

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           LK+ V   G+ N N  AI PT +I+ I   + SI P    + ++    +G       F+ 
Sbjct: 571 LKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMN 630

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                + ++  A++I P  +I++ +   + +
Sbjct: 631 ND-------------------------------NQALYRDAYDIGPEAIIDTYAEATRHV 659

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 660 DQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIR 697


>gi|312601196|gb|ADQ90451.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyopneumoniae 168]
          Length = 720

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 169/737 (22%), Positives = 296/737 (40%), Gaps = 99/737 (13%)

Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305
            +    + E     ++       +       +L  L         F   ++G    Y  Y
Sbjct: 54  FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 113

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
            L  N + +   + F  RV +          ++A +    +    F  +TPT  N+G  +
Sbjct: 114 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 172

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +  SC+L  V D++  I  A+  +  L+K  GG+    + +R  GA I     ++ GV
Sbjct: 173 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 232

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D+    NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 233 IPVMKILEDSFSYANQLGQRQGAGAVYLNAHHPDILAFLDTKRENADEKIRIKSLSLGII 292

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542
           IP++  +    N    LFS   V D+  +Y K F      E Y +     EIK    ISA
Sbjct: 293 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISA 348

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597
             L++ +  + FE+G+P+I F+D  N      H   V  SNLC+EIT  S+         
Sbjct: 349 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLS 406

Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                    CNLGS+N+     +   D++++      A+ V+    D++       +K N
Sbjct: 407 FKEIGKDICCNLGSLNIDKAMES-GPDFEQMVYYSVLALDVVSRNSDLSVA--PSIQKGN 463

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + + AIGLG M     L    I Y S EA++  +     ++F A  AS +LA++ G +S 
Sbjct: 464 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 523

Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           F+ + +  G +      +             E+  +  +   ++  W  L +++K  G+ 
Sbjct: 524 FEKTKFASGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLIEKIKKTGIA 583

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS+ MAIAPT +I+ +   + S+ P    + ++         V S+              
Sbjct: 584 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 629

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
                           ++     K +   A+E+ P+ +I   S  QK +DQA S+ L++ 
Sbjct: 630 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 673

Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +  + + L+  Y  A+    K+ YY+R R                               
Sbjct: 674 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 702

Query: 938 LGIPSSCTSDTECEVCQ 954
             +     +   C+ CQ
Sbjct: 703 QDVLEDSENYETCQSCQ 719


>gi|161615702|ref|YP_001589667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365066|gb|ABX68834.1| hypothetical protein SPAB_03487 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 714

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|282862309|ref|ZP_06271371.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. ACTE]
 gi|282562648|gb|EFB68188.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. ACTE]
          Length = 971

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 125/628 (19%), Positives = 230/628 (36%), Gaps = 36/628 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+  V D +  I    +E  M+ 
Sbjct: 127 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 186

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 187 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 245

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E F++ +    +  R   D              +            + ++    
Sbjct: 246 VDHPDIENFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 295

Query: 514 YGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
              EF  A E+  +   R  +   V  ++ A +L+RKM    +    P I + D  N   
Sbjct: 296 VNDEFMKAVESGGKFGLRARMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWH 355

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                G ++ SN C+E        +   CNL S+NL+         +  F+ ++ A  + 
Sbjct: 356 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGEGHQSFEAERFAKVVE 411

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             +  +D  I       +K  ++    R +G+G     + L      Y S     +A   
Sbjct: 412 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRSLAGAI 471

Query: 687 MEFISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTS 742
              ++  +   S ELA   G Y  +  +     + +         A   D+L   +   +
Sbjct: 472 TSLMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHSDANATAVRVDDLDSPVWAAA 531

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              W ++ +     G RNS    IAPT TI       +  ++P    + + K    G   
Sbjct: 532 TEAWQDVLRLGAKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQ 591

Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855
           +VN  +   L++     E + + +     +G++ +   +  +  ++   A     I  M 
Sbjct: 592 IVNGTVPQALRRLGYQAEQIEAIVAHIAENGNVIDAPSLKTEHYEVFDCAMGERSISAMG 651

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R         S
Sbjct: 652 HVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 711

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           T K  + K      T+         +  
Sbjct: 712 TKKWEEKKDEVTAKTEDTIRAAVEKVVE 739


>gi|227891213|ref|ZP_04009018.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius ATCC 11741]
 gi|227867087|gb|EEJ74508.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           salivarius ATCC 11741]
          Length = 723

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 285/712 (40%), Gaps = 76/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            E L     +  K    +   +  E     I+                +  L + LK E 
Sbjct: 34  EEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  + +   + + F  RVA          EK A+E  + L  
Sbjct: 92  DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150

Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           RG GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +K
Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD + + V +N    LF P  V  ++       +I  E    
Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+E
Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386

Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I          + +E  V     S NL +    N         ++    R L  V D  +
Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N     IGLG MG  + L    I Y SPEA+E        +++  + AS 
Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750
           ++A+ER   + +F+ S +  G +    +          + E+ D + +   ++  W  LK
Sbjct: 507 KIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809
           + V   G+ + N +A+AP  +I+ I   + S+ P    +  +     G       +L N 
Sbjct: 565 EHVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                         +    + +A++ D   +I++ +  Q+ +DQ
Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653

Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             SL L++                   + + L  +   A   G+K+ YY+R+
Sbjct: 654 GMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705


>gi|297202847|ref|ZP_06920244.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sviceus ATCC 29083]
 gi|197717331|gb|EDY61365.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sviceus ATCC 29083]
          Length = 966

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 120/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 126 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 185

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 186 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 244

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E+F++ +    +  R   D      +    +  V           ++       
Sbjct: 245 VDHPDIEDFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDAFMKAVE 304

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G +F            R   +V  ++ A AL+RKM    +    P I + D  N     
Sbjct: 305 TGGKF--------GLTSRMTGEVIEEVEAKALFRKMAEAAWACADPGIQYDDTINHWHTC 356

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+         N  F+ ++ A  +   
Sbjct: 357 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKVVELV 412

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 413 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGSITS 472

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  +   S ELA   G Y  +  +                +      ++      +  
Sbjct: 473 LMTGTSYRRSAELAAVVGPYDGYARNAQPHLRVMKQHSDENGKAVRVDDLDTPIWAAATE 532

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RNS    IAPT TI       +  ++P    + + K    G   +V
Sbjct: 533 AWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 592

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +     +G++ +   +  +  ++   A     I  M  +
Sbjct: 593 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKHEHYEVFDCAMGERSISAMGHV 652

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R         S  
Sbjct: 653 RMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 712

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
                K       +         +  
Sbjct: 713 TKEKEKTEVTEKAEATIRETVEKVIE 738


>gi|261749411|ref|YP_003257096.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497503|gb|ACX83953.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 571

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 164/632 (25%), Positives = 264/632 (41%), Gaps = 106/632 (16%)

Query: 302 YDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
            + Y   I G  +   E P   + R++   A    + +    +F+N+L     + STP +
Sbjct: 24  NELYLTTIKGGYLLDGETPFEAYKRLSENAAKILKKPKI-EKKFFNILWKGWLIPSTPVM 82

Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
            N GT      SCF   V D +Y I+    E A+L+K+ GG   D++ +R +G+ I    
Sbjct: 83  VNLGTEKGLPISCFSGRVGDSMYEIYRKNLEMAILSKHGGGTSYDFSLIRSVGSPIKNGT 142

Query: 419 -GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G S G+IPF+K  +   +A  QG  R+GAV  YL   H +  EFL +R+  GD  R+ H
Sbjct: 143 LGTSDGIIPFVKSYDSAIIASKQGSTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCH 202

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           +++    + + FM++V +                                          
Sbjct: 203 NVHQGVILSNSFMEKVLK------------------------------------------ 220

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSS 594
           +     +LW   L    +TG P++ FKD  N     + +++   +H SNLC+EI L +  
Sbjct: 221 KNGKERSLWINTLKERVKTGEPYLFFKDNANRNLPENWKKNGLKIHHSNLCSEIMLPTDE 280

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKK 648
             T VC L S+NL  +         K   T+  A+  LD V+        N   IE A +
Sbjct: 281 SHTLVCCLSSLNLYKYVE------WKDTQTVFYAILFLDAVLQEFINKGKNIKGIEDAVR 334

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                RA+GLG +G+ S L    IP+ S ++  +  +    I   +  A+  LA+E G  
Sbjct: 335 FAEKSRALGLGALGWHSYLQSEMIPFISVKSEILTHDIFGKIRSESQKATQYLAKEYGES 394

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
               G+                                          G RN   MA+AP
Sbjct: 395 EWNIGT------------------------------------------GRRNLTLMAMAP 412

Query: 769 TATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
             + A + G +SQ ++P   N+YV  +  G     N +L   L +       +   +   
Sbjct: 413 NRSSAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKILIKSGYNLPEVWEQIANE 472

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886
            GS   +  + +  K +     EI+ + LI+ AS RQK+IDQ QS+NL +      K ++
Sbjct: 473 KGSCLGLTGLSEKEKNVFLCFKEINQLELIKQASIRQKYIDQGQSINLAFHQNTPAKFIN 532

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            ++ +AW +GLK+ YY RS S    E +  + 
Sbjct: 533 KVHLEAWKIGLKSLYYYRSESILRAENTKSRD 564


>gi|186472165|ref|YP_001859507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phymatum STM815]
 gi|184194497|gb|ACC72461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phymatum STM815]
          Length = 851

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 143/661 (21%), Positives = 251/661 (37%), Gaps = 88/661 (13%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG--LALKETEKEKRAVEFYNLLSSFHFM 352
              L +L ++Y               + RVA G  LA  E  +      F   L +    
Sbjct: 24  QFSLDVLMEKYAKGDER----TADDVYRRVARGVALAEPEALRPAIEARFVENLQNGALG 79

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 80  AGRIMSAAGAGIQATLINCFVQPVGDSIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNF 139

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +  T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF+D
Sbjct: 140 SAIRPRGARVKTTGSSASGPCSYIDVFDASCRTVESAGSRRGAQMAVLDCTHPDLLEFID 199

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM+ V  +A W L    E +                
Sbjct: 200 AKHSKG----RWNNFNVSVAVTDEFMQAVENDAMWQLVHRAEPTP----------ALRAA 245

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            + +     + V+ +  A  ++ +++   ++   P I F    N  +  + V  + ++N 
Sbjct: 246 NDVRQRDDGMWVYSERRAKEIFDRIMRSTYDIAEPGIVFISRMNDDNNLRAVESIRATNP 305

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L         CNLG +NL     +           FD+D LA   RT VR LD+V
Sbjct: 306 CGEQPLPPY----GCCNLGPLNLTRFVLDPFAQRHGGKPSFDWDALAQRTRTQVRFLDDV 361

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    +E+    +   R IG+G  G    L ++ + Y S E  + A    + +   A 
Sbjct: 362 LDVTLWPLEQQYDESRAKRRIGVGFTGLGDTLVMMGLRYNSQEGRDFAVRIAKLMRDEAY 421

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA+                    L   +  L     +    D++K+ ++T
Sbjct: 422 RASVELARERGAFP-------------------LFNAKQYLQDGTFASRLPDDVKEAIRT 462

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS----NMSGDFTVVNSFLVNE 809
            G+RNS+ ++IAPT T++       S  I+P++   Y ++    N S +   V       
Sbjct: 463 HGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRTKVMANGSREQFAVEDHAYRL 522

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            ++                G +G++            +A E+     ++  +  Q +ID 
Sbjct: 523 YRELG--------------GDVGHLP-------DYFVSALEMSARDHLDMMAAVQPYIDT 561

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + S  + +  +      + +Y  AW  GLK     R         S         +    
Sbjct: 562 SISKTVNVPADYPFDAFENLYFDAWKGGLKGLATYRPNETLGAVLSVTPQAAPTADDALA 621

Query: 929 T 929
            
Sbjct: 622 E 622


>gi|319942969|ref|ZP_08017252.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
 gi|319743511|gb|EFV95915.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia
           mirabilis ATCC 51599]
          Length = 829

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 144/670 (21%), Positives = 246/670 (36%), Gaps = 73/670 (10%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356
            +L ++Y      +  E+    F RVA  LA  E    +++   +F   L +        
Sbjct: 23  DVLAEKYLKDGEKTEAEL----FARVARALASVEKPEIRDEWEAKFLGNLHAGAIGAGRI 78

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                      L +CF+  V D           GI+ AL+E A   +  GG+G D++ +R
Sbjct: 79  MSAAGTDIQATLINCFVQPVGDCIQGYDDQGYPGIYEALREAAETMRRGGGVGYDFSRIR 138

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GT+  + G   ++ V + +   V   G R+GA    L   H DV +F+  ++ 
Sbjct: 139 PNGAEVKGTHSIASGPCSYINVFDQSCATVESAGSRRGAQMGVLRIDHPDVLDFITAKRT 198

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + D FMK +  NA W L             G             
Sbjct: 199 PG----RWNNFNVSVGVTDAFMKALQDNADWELVHRARPGRKVMAAGAY----------- 243

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  V+R++ A  LW  ++   ++   P I F D     +   +   + ++N C E 
Sbjct: 244 QRDDGKWVYRRVPARQLWDTIMKSTYDFAEPGILFLDAIGRDNNLNYCETIEATNPCGEQ 303

Query: 589 TLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCH 641
            L         C+LG I L     N         FD+      +   VR LDNV+D+   
Sbjct: 304 PLPPY----GCCDLGPIILTRFVRNAFGHGGEPTFDFAAFEDVVAIQVRALDNVLDVTFW 359

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            ++K +      R IG+G  G  + L +L + Y   E   +A    E +   A  ASVEL
Sbjct: 360 PLDKQRAEAAAKRRIGVGFTGLGNTLAMLKLRYDRAEGRAMAARIAETMRNAAYRASVEL 419

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+GA+  F    +            L +   +   +  SRL  D++K  ++  G+RNS
Sbjct: 420 AKEKGAFPQFDADRY------------LGKGSKKGEGSFASRL-PDDIKADIRKYGIRNS 466

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + ++IAPT T++       S  I+P +   Y +     D +  + ++V +          
Sbjct: 467 HLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSR-SEYVVED---------H 516

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
                K   G +       D+L      A  +     +      Q ++D + S  + +  
Sbjct: 517 AWRLFKSQGGDV-------DNLPDYFVNALAMTAQEHVAMMEAVQPYVDTSISKTVNVPA 569

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           +   +    +Y+QAW   LK     R                 +  A             
Sbjct: 570 DYPYEDFKDLYQQAWKARLKGLATYRPNPILGAVLEAEPAKKEEKPADKAEAAAQQHEQD 629

Query: 939 GIPSSCTSDT 948
            +        
Sbjct: 630 PMRKVIERRP 639


>gi|269121364|ref|YP_003309541.1| ribonucleoside-diphosphate reductase, subunit alpha [Sebaldella
           termitidis ATCC 33386]
 gi|268615242|gb|ACZ09610.1| ribonucleoside-diphosphate reductase, alpha subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 696

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 164/692 (23%), Positives = 293/692 (42%), Gaps = 58/692 (8%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI-- 300
             +     ++       I+  ++     +    +    +        D  F +       
Sbjct: 35  LDYVNKNTVFFYTLKEKIDYLIENDYYIDFYKMYTFEEIQKVFTLVYDKKFRFPSFMSAF 94

Query: 301 -LYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
             Y  Y L  +     +E  +    R+A+           +++E+  +L +  +  +TPT
Sbjct: 95  KFYQSYALRDDSGEKFLERYED---RIAVISLYLGQGNLTQSLEYAEMLINQEYQPATPT 151

Query: 358 LFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             NSG +   +L SCFL  + D+L GI  A+     L+   GG+  + + +RG G  I G
Sbjct: 152 FLNSGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSIGGGVALNLSKLRGRGESIKG 211

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
             G++ GV+P +K+  D     NQ G+R GA   YL  +H D+EEFLD +K   D++ R 
Sbjct: 212 VEGRASGVLPIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDIEEFLDCKKINVDEKVRI 271

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             ++    IPD FM+   ++  + +F    V   +  Y  + +   E YE   D   +K 
Sbjct: 272 KSLSIGVIIPDKFMELAEKDEPYYVFHAHTVFQEYGKYLDDMD-MNEMYEELVDNPNVKK 330

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----- 591
            +K++A  L  K+     E+G+P++ FKD  N     + +G V  SNLCTEI        
Sbjct: 331 -KKLNARHLLVKIAQTQKESGYPYLFFKDNANNEHALKDIGEVKFSNLCTEIMQLSEVSD 389

Query: 592 --SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKK 648
             +  EE  +    S NL +       +  ++   ++TA+  L  V D+     +   KK
Sbjct: 390 IGTYYEEDTIRRGISCNLGSLNIVTVMENKRIKEAVKTAMESLTMVSDLTNIDMVPSIKK 449

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGA 707
           +N    ++GLG M          I Y S EA++  +     +++++I  S+E+A+     
Sbjct: 450 ANEELHSVGLGAMNLHGFFAKNFIMYESREALDFCNVFFMIVNYYSIEKSMEIARDRNKR 509

Query: 708 YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNS 761
           +  F+ S + +G +       + +    +V++    ++  ++  W+ LK +V   GM ++
Sbjct: 510 FKDFEKSEYAKGTYFDKYTEHEYMPKTEKVKELFDGIHIPTKEDWEILKGQVMKNGMYHA 569

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             MAIAP  + + I   + S+ P    + V+            +L N+            
Sbjct: 570 YRMAIAPNQSTSYILSSTASVMPIVDTIEVREYGDSTTFYPMPYLTND------------ 617

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP- 880
                                  + +A+++D   LI+  S  Q+ +DQ  S  LY +   
Sbjct: 618 -------------------NYFFYKSAYDMDQKSLIKLISVIQRHVDQGISTILYTNSSD 658

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           + + L   Y  A  MGLK+ YY R+R AT  E
Sbjct: 659 NTRDLAKYYVYAHKMGLKSLYYTRTRKATIDE 690


>gi|311898754|dbj|BAJ31162.1| putative vitamin B12-dependent ribonucleotide reductase
           [Kitasatospora setae KM-6054]
          Length = 964

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 122/603 (20%), Positives = 225/603 (37%), Gaps = 28/603 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFG 385
           G      + E    E  + L    F  ++P  FN GT+   Q+S+CF+  V D +  I  
Sbjct: 120 GYFASPDDAEIFEHELTHALLHQVFSFNSPVWFNVGTQQPQQVSACFILAVDDSMDSILD 179

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  M+ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 180 WYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 238

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H DVE F++ +    +  R   D      +    +  V           
Sbjct: 239 RAAKMVVLDVDHPDVEAFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRV 298

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           ++        G  F +              +V   + A AL+RKM    +    P I + 
Sbjct: 299 NDEFMTAVENGGSFGLRARMT--------GEVIETVDAKALFRKMAEAAWACADPGIQYD 350

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
              N        G +++SN C+E        + + CNL S+NL+    ++  FD ++ A 
Sbjct: 351 SVINHWHTCPESGRINASNPCSEYMH----LDNSSCNLASLNLMKFLRDDDSFDAERFAK 406

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       EK  ++   +R +G+G     + L      Y S     +A
Sbjct: 407 VVELVITAMDISICFADFPTEKIAETTRAYRQLGIGYANLGALLMATGHAYDSAGGRALA 466

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                 ++  A   S ELA   G Y  +  +               A V      +  + 
Sbjct: 467 GAITSLMTGTAYRRSAELAAVVGPYDGYARNAAPHQRVMRQHADASAAVAPLDDLDAPVW 526

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             +   W ++ +     G RN+    +APT TI  +    +  ++P    + + K    G
Sbjct: 527 AVANDTWADVVRLGARNGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 586

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   LK+    DE + + +      G++ +   +     ++   A     I 
Sbjct: 587 SMQIVNGTVPRALKRLGYQDEQVEAVVAHIAEHGNVIDAPGLKSAHYEVFDCAMGERSIS 646

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q WI  A S  + +  + + ++++ IY +AW +G+K     R       
Sbjct: 647 PMGHVRMMAAIQPWISGAISKTVNMPEDATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQ 706

Query: 912 EKS 914
             S
Sbjct: 707 PLS 709


>gi|241206479|ref|YP_002977575.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860369|gb|ACS58036.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 716

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 185/713 (25%), Positives = 298/713 (41%), Gaps = 76/713 (10%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R  L+K R        +   + T      L  +      E   +  +L +   +F    
Sbjct: 32  GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDL 90

Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337
                 Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA  +   E 
Sbjct: 91  FDQA--YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGD---ES 145

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
            A +  + + S  F  +TPT  N+G +   +L SCFL  V D++  I  ++     L+K 
Sbjct: 146 LARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 205

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            GG+    T +R  GA I     +S G+IP +K+  D+    NQ G R+GA   YL   H
Sbjct: 206 GGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 265

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  FLD ++   D++ R   ++    +PD+  +    N    LFSP    D+  +YG 
Sbjct: 266 PDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSP---YDVERVYGV 322

Query: 517 EFEIAYENYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            F       + +    + ++  +KI A   ++ +  + FE+G+P+I F+D  N  +P   
Sbjct: 323 PFTEISVTEKYREMADDARISKKKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI-- 380

Query: 576 VGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLAS 623
            G V  SNLC+EI   S + E               CNLGS+N+ A       D      
Sbjct: 381 AGRVSMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAA-----MDSVDFGK 435

Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           TI T++R L  V D+ +  ++   +K N    AIGLG M     L    I Y S E V+ 
Sbjct: 436 TIETSIRALSAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDF 495

Query: 683 ADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------R 733
            +     ++++AI AS  LA ERGA +  F+ S +  G +       L E          
Sbjct: 496 TNIYFYTVTYYAIRASNLLAVERGASFKGFENSKYASGDYFDKYTDRLWEPATERVKALF 555

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           +   ++  ++  W  LKK V   G+ N N  A+ PT +I+ I   + SI P    + ++ 
Sbjct: 556 ETSGIHIPTQEDWVALKKAVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK 615

Query: 794 NMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
               G       F+ N+                                   +  A+EI 
Sbjct: 616 EGKIGRVYYPAPFMTND-------------------------------NLDYYQDAYEIG 644

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 645 PEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKTIYYIR 697


>gi|238896130|ref|YP_002920866.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548448|dbj|BAH64799.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 713

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 272/637 (42%), Gaps = 68/637 (10%)

Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            +LG    Y  Y L        +E      + VA+ LA      E++A +    + S  F
Sbjct: 100 TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLA---RGDEQQARQLTEEILSGRF 156

Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N+G +   +L SCFL  + D++  I  A+     L+K  GG+    + +R  
Sbjct: 157 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 216

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GV+P +K+  D     NQ G R+GA   +L   H D+  FLD R+   
Sbjct: 217 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 276

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529
           D++ R   ++    IPD+  +   ++A   LFSP    D+  LYGK F   A  +   Q 
Sbjct: 277 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 333

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579
              E    R I A  L++++  + FE+G+P+I F+D  N  SP             +  V
Sbjct: 334 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 393

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
            + +   E    +   E   CNLGS+N+         D      TI TAVR L  V D+ 
Sbjct: 394 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 448

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++      N    AIGLG M     L    I Y SPE ++  +     +++HA+  S
Sbjct: 449 HIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 508

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749
           ++LA+ER   ++ F+ S +  G +    +    + + E          ++   R  W +L
Sbjct: 509 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQL 568

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V   G+ N    A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 569 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 628

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                  ++  A+EI P  +I++ +   + +D
Sbjct: 629 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 657

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 658 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 694


>gi|194451930|ref|YP_002046770.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205359377|ref|ZP_02669536.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194410234|gb|ACF70453.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205336552|gb|EDZ23316.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 714

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGETFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|198245896|ref|YP_002216783.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940412|gb|ACH77745.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326624541|gb|EGE30886.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 714

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + EG    
Sbjct: 15  DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 74

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        ++ L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 75  AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
            +V      YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 312 YDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 542 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690

Query: 900 TYYLR 904
            YY+R
Sbjct: 691 LYYIR 695


>gi|172041161|ref|YP_001800875.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           urealyticum DSM 7109]
 gi|171852465|emb|CAQ05441.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 719

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 167/700 (23%), Positives = 283/700 (40%), Gaps = 66/700 (9%)

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
            +       +   + T         E     +E     + + +      +  L      +
Sbjct: 43  HKAANQFFLQHVNQNTVFFHNL--AEKLEYLVENKYYDKEILDKYDFPFIKALFKQAYAK 100

Query: 289 RDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +     +LG    Y  Y L   +G R  E  +    RV M         E+ A    + +
Sbjct: 101 KFRFQSFLGAYKYYTSYTLKTFDGKRYLERFED---RVCMVALGLADGDEEMAKSLVDEI 157

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               F  +TPT  N G     +  SCFL  + D++  I  ++     L+K  GG+    +
Sbjct: 158 LDGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 217

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I     +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD 
Sbjct: 218 NIREAGAPIKHIENQSSGIIPVMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDT 277

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523
           ++   D++ R   ++    IPD+  +   +NA   LFSP +V     +YGK F      E
Sbjct: 278 KRENADEKIRIKTLSLGVVIPDVTFELARKNADMYLFSPYDV---ERVYGKPFADISVTE 334

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
           +Y+   +   I+  +KI+A   ++ +  + FE+G+P+I ++D  N  +P    G +  SN
Sbjct: 335 HYDEMVEDPRIRK-KKINARDFFQTLAEIQFESGYPYIMYEDTVNRANPI--AGRITHSN 391

Query: 584 LCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           LC+EI         N       + +  S NL +       D    + TI  A+R L  V 
Sbjct: 392 LCSEILQVSTPSAFNEDLTYETIGDDISCNLGSMNIAMAMDSADFSKTIEIAIRALTAVS 451

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  +  ++   ++ N    AIGLG M     L   HI Y S EA++  +     + +  +
Sbjct: 452 DQTDIDSVPSIRQGNDHSHAIGLGQMNLHGYLGREHIHYGSEEALDFTNAYFAAVMYECL 511

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPW 746
            AS ++A ERG  +  F+ S +  G F     P +      +V++  A +     +   W
Sbjct: 512 KASNKIAIERGTAFHDFENSEYASGAFFDRYDPAEFAPKTEKVKEIFAASSIEVPTTEDW 571

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSF 805
            ELK  V   G+ N N  A+ PT +I+ I   + SI P    + ++     G        
Sbjct: 572 AELKASVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYAAPH 631

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           + N                               +  +    A+E+    +I++ +   K
Sbjct: 632 MNN-------------------------------ENLEYFEDAYEVGFEKIIDTYAVATK 660

Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 661 YVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYVR 700


>gi|197249723|ref|YP_002147707.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197213426|gb|ACH50823.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 714

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 173/680 (25%), Positives = 284/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAKMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S EA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSSEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|332292140|ref|YP_004430749.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170226|gb|AEE19481.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 596

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 155/625 (24%), Positives = 250/625 (40%), Gaps = 119/625 (19%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            P+     VA             + +FY  +S   F  ++P   N G       SCF + 
Sbjct: 62  SPEERIREVADRAEQILGIP-GFSDKFYGYMSEGFFSLASPVWSNFGKERGLPISCFGSH 120

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + DD+  I     E  M++K  GG    +  +R  GA +   NG++ G +  +++     
Sbjct: 121 ISDDMGNILYTQSEVGMMSKLGGGTSGYFGKIRPRGADVKN-NGQASGSVHIMQLFESMV 179

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QG  R+G    YL   H D+EEFL +      +     ++     + + +M+ +  
Sbjct: 180 DVVSQGSVRRGRFSPYLPIEHADIEEFLKIGT----EGNSIQELTHGVTVTNEWMEEMIA 235

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
                                                           +LW K+L    E
Sbjct: 236 GDSAK------------------------------------------RSLWAKVLQSRGE 253

Query: 556 TGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            G+P+I F D  N       + +   +++SNLCTEI L S+ + + VC L S+N+L    
Sbjct: 254 MGYPYIFFTDNANNGAADVYKDNDHKIYASNLCTEIMLPSNDDWSFVCVLSSVNVL---- 309

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS------------------NHTHR 654
              +D  K    + T V  LD VI      +E+ + S                     +R
Sbjct: 310 --HYDKWKNTDAVETMVYFLDAVITEFLEKLERYRDSDSREDRQTFLFMERAYNFAKANR 367

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           ++GLG++G+ S L    +P+ S EA  +  E  + I   +  AS ELA+  G     KG 
Sbjct: 368 SLGLGVLGWHSLLQSRMLPFNSQEAYNLNSEIFKAIKDKSYEASEELAKTFGEPEVLKG- 426

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                                                     G RN+   A+APT + A 
Sbjct: 427 -----------------------------------------YGRRNATLNAVAPTTSSAF 445

Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I G VSQ I+P + N+YVK       T+ N FL   L+++ +    +   ++  DGS+ +
Sbjct: 446 ILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLEELLEEKGMNTTEVWRSIRDMDGSVQH 505

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
           +E + ++ K    T  EID M +I  A+ RQ  IDQ QS+N+ +  E   K+++ I+  A
Sbjct: 506 LEFLSENEKDTFKTYSEIDQMDIIYQAANRQNHIDQGQSVNIIVHPEMPVKEINKIHVTA 565

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLK 917
           W +GLK+ YY  S +A    K    
Sbjct: 566 WKLGLKSLYYQHSMNAAQKFKQKKD 590


>gi|311993500|ref|YP_004010365.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9]
 gi|295917457|gb|ADG60128.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9]
          Length = 803

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 176/879 (20%), Positives = 300/879 (34%), Gaps = 148/879 (16%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++   G    F   ++  ++E +C     ++   +         D ++ ++++ A++ 
Sbjct: 1   MKVIKSSGIAQDFIPAKIIQVLEWSCEK-TTINPYELFELCQPFFKDEMTTTEIQRAIVK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            S   I+ +  +Y  V +      LR+EV                  LY     +  + G
Sbjct: 60  VSADSIQIDQTDYQYVASNLAQFGLRKEVYGQFDPPH----------LYDHVVAK-TDVG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFF 321
           +    + E     +   L   + ++RDF F Y G   + D+Y +     G   E PQ  +
Sbjct: 109 IYDPEIIERYTREEFDALNAMIDHDRDFNFTYAGTMQMKDKYLVKDRSSGEIFETPQFLY 168

Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           M + M L   E    + +   +FY+  S F     TP L    T   Q SSC L    DD
Sbjct: 169 MLIGMCLHQNENPAKRLQYIKDFYDAASQFKISLPTPILAGVRTPTRQFSSCVLIETGDD 228

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G     +R  G+ I     K  GV PF K+ N    + +
Sbjct: 229 LESITETTSAIVKYVSKRAGIGISGGAIRAEGSKIGPGEVKHTGVTPFWKLKNAAVHSCS 288

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG RKG+   Y   WH++ E  + L+ N G +  R   M+    + +L ++R   N   
Sbjct: 289 QGGIRKGSATCYWPIWHLECENLMVLKNNKGIEENRIRHMDYGIQLNNLMIERYLTNDYV 348

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR-KMLTMLFETGH 558
           TLFS +             E  +     + +R      ++I A  L++   +T    T  
Sbjct: 349 TLFSTEINGGKLLESYYADEELFRTMYEELERNPAIRKKRIKATELFQGLFMTERANTAR 408

Query: 559 PWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNS---------------SSEETAVCNL 602
            +    D  N      + +  V  SNLC EI L++                   + +   
Sbjct: 409 LYPQHVDNTNNFGPWIRSIAPVKMSNLCAEIALHTVALGTYQTQRLTVASGDIVSFIEKY 468

Query: 603 GS------------------------------------INLLAHFAN--NQFDY---DKL 621
           GS                                    I L    A   + FD+   +++
Sbjct: 469 GSKRVVLPSVEDGFTRVKKGYRAKEGEIAFNVQEDLGEIALCTLSAWVLDNFDWRDQEEV 528

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
                  VR LDN++D   +  + A K    +R++G+G+  + + L      Y      E
Sbjct: 529 NRIGMVMVRALDNLLDYQDYPHQNALK-AKEYRSLGIGVTNYAAWLASNASSYEDD--HE 585

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
              E  E + +  I+AS++LA+E+G       + + +G  PID      +          
Sbjct: 586 TTHELFERLQYALINASIDLAEEKGPSPQLHKTKYGRGELPIDWYCKNVDE----LAPPV 641

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
             L W+  + R+K IGMRN    A  P  + + +   +  I+   + +  K +  G F  
Sbjct: 642 YVLDWEATRTRLKIIGMRNVTLSAQMPCESSSQVSNSTNGIERPLKPVSYKQSKDGSFNQ 701

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
           V        +   ++ E                                      +   +
Sbjct: 702 VVPNY----EVNQMFYEFAWESAAKFG------------------------NKGYLAKMA 733

Query: 862 RRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
             QKW DQA SLN Y    S +        +       +  G K  YY  +         
Sbjct: 734 VIQKWTDQAISLNTYYVPASYENGKVPMSAMMDDMLYCFYYGNKNMYYHNT--------- 784

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                   G  S  ++D +CE C
Sbjct: 785 ----------------------DDGSGSDDSNDADCESC 801


>gi|200387421|ref|ZP_03214033.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199604519|gb|EDZ03064.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 714

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGIMLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|55978392|ref|YP_145448.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus
           thermophilus HB8]
 gi|55773565|dbj|BAD72005.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermus
           thermophilus HB8]
          Length = 559

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 164/587 (27%), Positives = 245/587 (41%), Gaps = 103/587 (17%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E    +F   ++   +  +TP   N G R     SC+ T V DD   I  A+ E  M++K
Sbjct: 51  EGFGRKFLEYMARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGMMSK 110

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG       +R  GA I   NG+S G   F  + +      NQG  R+G   AYL+  
Sbjct: 111 QGGGTSLYLGRLRPRGAPIRD-NGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYLDVE 169

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+L +++    +      +     + D +++ +                      
Sbjct: 170 HPDLEEWLSIQR----EHSPVQSLFWGVSVGDRWLEEMIAG------------------- 206

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                           GE +          W K+L    E G P++ F+D  N ++P+  
Sbjct: 207 ---------------DGEKRAR--------WAKILKSRAEVGIPYLFFRDNANQKAPEVF 243

Query: 576 ---VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 + +SNLCTEI L SS EE+ VC L S+NLL       ++  K    + T V  L
Sbjct: 244 RALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLVIFL 297

Query: 633 DNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D+V+D           +E+A +    +RAIGLG++G+ S L    IP  SPEA     E 
Sbjct: 298 DSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRNAEI 357

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + I   A  AS  L +                                       R P 
Sbjct: 358 FKTIRERAEEASRWLRK---------------------------------------RHPE 378

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           DEL    +    RN+  +AIAPT + A I G VS SI+P   N Y+K          N F
Sbjct: 379 DELAGVGELKERRNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFKNPF 438

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++   +E +   +  H+GS+ +++ + D+ K +  T  EI  M L+  A+ RQK
Sbjct: 439 LEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAASRQK 498

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            IDQ QSLNL +  E   + ++ +   AW  GLK  YY  S+S    
Sbjct: 499 HIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQSVAQA 545


>gi|295699386|ref|YP_003607279.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1002]
 gi|295438599|gb|ADG17768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. CCGE1002]
          Length = 861

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 146/659 (22%), Positives = 256/659 (38%), Gaps = 80/659 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352
              L +L ++Y         +     + RVA G+A  E    +     +F + +      
Sbjct: 32  QFSLDVLLEKYAKGDE----QSADDVYRRVARGVAEAEPPELRASVEEQFVDNMRHGALG 87

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 88  AGRIMSAAGSGIAATLINCFVQPVGDSIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNF 147

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 148 SAIRPKGARVHTTSSAASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 207

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM+ V     W L    E S      G         
Sbjct: 208 AKHSKG----RWNNFNVSVGVTDEFMRAVENEEPWQLVHRAEPSPALRAAGDV------- 256

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N 
Sbjct: 257 ---RQREDGLWVYSEHPARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 313

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL                 FD+D LA   RT VR LD+V
Sbjct: 314 CGEQPLPAY----GCCNLGPLNLTRFVVDPFAQLQGRQPSFDWDGLARRTRTQVRFLDDV 369

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + +    +   R IG+G  G    L ++ + Y S E  + A      +   A 
Sbjct: 370 LDVTLWPLPEQYAESRAKRRIGVGFTGLGDTLVMMGLRYNSQEGRDFAVRIARLMRDEAY 429

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA+  F  + +                   L     +    D+LK+ ++ 
Sbjct: 430 RASVELAKERGAFELFDAARY-------------------LEAGTFASRLPDDLKQAIRR 470

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y +             ++ +  + 
Sbjct: 471 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGGRE 519

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E     L    G  G++ R+PD       +A ++     ++  +  Q ++D + S 
Sbjct: 520 SFDVEDYAYRLYRELG--GDVTRLPD----YFVSALQMSARDHLDMMAAVQPYVDTSISK 573

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            + +  +      + +Y  AW  GLK     R         S          A    DP
Sbjct: 574 TVNVPADYPFDAFESLYFDAWKSGLKGLATYRPNDTLGAVLSVSSAQSDDTLAEMDQDP 632


>gi|94311068|ref|YP_584278.1| ribonucleotide reductase large subunit [Cupriavidus metallidurans
           CH34]
 gi|93354920|gb|ABF09009.1| ribonucleotide reductase, coenzyme B12-dependent [Cupriavidus
           metallidurans CH34]
          Length = 832

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 154/663 (23%), Positives = 258/663 (38%), Gaps = 80/663 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFM 352
            + +++L ++Y         +       RVA  LA  E   ++E  A  F        F+
Sbjct: 16  DISIEVLQEKYAKGEE----QTIDDVRRRVARALAEVEPADKREAWASRFL-WALEGGFV 70

Query: 353 CSTPTLFNSGTRHP-QLSSCFLTTVPDD-------LYGIFGALQENAMLAKYSGGLGNDW 404
            +      +GT     L +CF+  V D           I+ A+ + A   +  GG+G D+
Sbjct: 71  PAGRINSAAGTGIQATLINCFVQPVGDSVSQVRGGKPSIYTAVAQAAETMRRGGGVGYDF 130

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +  T+ ++ G + F+KV + +   V   G R+GA    L   H D+E F+ 
Sbjct: 131 SSIRPGGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIH 190

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +     DR    + N +  + D FM+ V  +    L    E        G     AY  
Sbjct: 191 AK-----DRGDLTNFNISIGVTDEFMQAVAADGEIELIHEAEPGADGIAAG-----AYRR 240

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            + Q       V+R++ A  LW +++   ++   P I F    N  +   +   + ++N 
Sbjct: 241 DDGQ------WVYRRVPARRLWDQVMQATYDHAEPGILFLSRINADNNLYYCETIEATNP 294

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDIN 639
           C E  L S       C LGSINL             FD++  A  +R + R+LDNV+DI 
Sbjct: 295 CAEQPLPSY----GCCCLGSINLTRFVRRPFTDQASFDFEAFAEVVRVSTRMLDNVLDIT 350

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              + + +      R IGLG +G  SAL +L   Y +  A  +A    E +  HA  ASV
Sbjct: 351 YWPLPEQQAEAQAKRRIGLGFLGLGSALVMLGHRYDTDAARALAGRISETMRDHAYLASV 410

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ELA+E+G +  F    +  G F                         + ++  ++  G+R
Sbjct: 411 ELAEEKGRFPLFDADAYLSGGFV--------------------SRLPEPIRDAIREHGLR 450

Query: 760 NSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           NS+ ++IAPT TI  A     S  I+P++   Y +              + +   R    
Sbjct: 451 NSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRRKR-----------MPDDSYRTFEV 499

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                 L  H G  G++E++P+       TA ++  +  +      Q +ID + S  + +
Sbjct: 500 ADHAWRLYRHMG--GDVEQLPES----FVTALQMSAIDHMRMLEAVQPYIDTSISKTVNV 553

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             +   +    +Y +AW  GLK     R         S            P T       
Sbjct: 554 PEDYPYEAFRNLYLEAWKAGLKGLATYRPNQVLGAVLSVTPAATATTAPAPATPSEDDPL 613

Query: 937 SLG 939
           +  
Sbjct: 614 TRP 616


>gi|294338964|emb|CAZ87308.1| Putative Ribonucleoside-diphosphate reductase large chain
           [Thiomonas sp. 3As]
          Length = 811

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 144/633 (22%), Positives = 251/633 (39%), Gaps = 78/633 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
            + L +L ++Y      +          RVA  LA+ E     R+   +    +  F+ +
Sbjct: 5   DISLDVLAEKYAKGDEHTIA----DIHARVARALAV-EEADPARSEALFRQALADGFVPA 59

Query: 355 TPTLFNSGTRHP-QLSSCFLTTVPDD-------LYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +GT     L +CF+  V D           I+ AL + A   +  GG+G D++ 
Sbjct: 60  GRIMSAAGTDIQATLINCFVQPVGDSVSDDKEGKPSIYKALAQAAETMRRGGGVGYDFSR 119

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GAH+ GT+ ++ G + F++V + +   V   G R+GA    L   H D+E F+  +
Sbjct: 120 IRPVGAHVGGTHSRASGPLSFMRVFDASCETVESAGSRRGAQMGVLRIDHPDIEAFIHAK 179

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D+    + N +  +   FM+ +  +A   L       D     G       E   
Sbjct: 180 -----DQGAFKNFNLSVGVSAAFMQAIENDAQIDLVHKARPGDDQLAEGAHQRADGEW-- 232

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                    V+R + A ALW +++   ++   P I F D  N  +   +     ++N C 
Sbjct: 233 ---------VYRSVRARALWDQIMQSTYDHAEPGILFLDTANADNNLYYCETFEATNPCA 283

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L     +   C LGSINL     +       FD +   +  R AVR+LDNV+D+   
Sbjct: 284 EEFLP----DYGCCCLGSINLTRFVRDPFTPKARFDAEGFQAVTRVAVRMLDNVLDVTYW 339

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +        R IGLG +G   A  +L + Y S +A   A +    +   A +ASV+L
Sbjct: 340 PLVEQHNEAQNKRRIGLGFLGLGDACVMLGLRYDSDDARRFAADLARTLRDAAYAASVDL 399

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+GA+  F  + +    F                    ++   + L+  +   G+RNS
Sbjct: 400 AKEKGAFPLFDATKYLDSGF--------------------AKRLPEALRADIAAHGIRNS 439

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + +A+APT TI+       S  I+P++  +Y +              + +   R+     
Sbjct: 440 HLLAVAPTGTISLAFADNASNGIEPAFSWVYTRKKR-----------MADNTTREYEVAD 488

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
               L    G   ++  +P        TA E+     ++     Q +ID + S  + +  
Sbjct: 489 HAWRLYRSMG--RDMSALPPA----FVTALEMSATDHMKMLQVVQPFIDTSISKTVNVPA 542

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +        +Y QAW  GLK     R  +    
Sbjct: 543 DYPYDDFKDLYLQAWKAGLKGLATYRPNAVLGA 575


>gi|330908706|gb|EGH37220.1| ribonucleotide reductase of class 1b (aerobic), alpha subunit
           [Escherichia coli AA86]
          Length = 714

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHASGFRFKTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F +IA   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
             ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 ERINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695


>gi|221632943|ref|YP_002522166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomicrobium roseum DSM 5159]
 gi|221155926|gb|ACM05053.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomicrobium roseum DSM 5159]
          Length = 589

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 158/609 (25%), Positives = 260/609 (42%), Gaps = 81/609 (13%)

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNLLSSFHFMCSTPTLFNSGT 363
            G  IE  +  F RVA  +A  E    +       A +FY L+++  F+ +TP L N+GT
Sbjct: 23  EGRIIETEEELFWRVARAVAAAEDAFPRGPRSAEIAEKFYELMTTLRFLPNTPALINAGT 82

Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
           +  QL +CF+  VPD L GIFGA+++ A + +  GG G  ++ +R  G  +  T   S G
Sbjct: 83  QLGQLFACFVIPVPDSLDGIFGAVRDAAKIQQTGGGTGFSFSHLRPRGDLVRSTRRPSSG 142

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
            + F+++ +  +  +     R GA  A L   H DV EF+D ++N     R     N + 
Sbjct: 143 AVSFIRIFDVASDVIATESVRGGANMAVLRCDHPDVREFIDAKRNPALFSR----FNFSV 198

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D F++   +     L +P          G  F  A                   +A 
Sbjct: 199 LVTDDFLRAAIERREIALINPRT--------GLPFAQA-------------------NAG 231

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L+  M+   +E G P + F D     +    +G + ++N C E+ L+        C LG
Sbjct: 232 ELFDAMVDAAWEVGDPGLLFYDRIQRDNAVPALGPLEATNPCGEVPLHP----WEACVLG 287

Query: 604 SINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           S+NL A           D   L  + R A+R LDN+++++ +   + +     +R +GLG
Sbjct: 288 SLNLRAFIVERGDRAFLDEAGLQESARLALRFLDNMVEVSRYPKVEIETICRANRKVGLG 347

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGF   L  L IPY S E+V +AD  M  +   A+ AS  LA+ERG + +F  S +   
Sbjct: 348 IMGFADLLLALRIPYGSDESVAVADRVMGLVQAAAVEASRRLAEERGPFPNFPISRYAAR 407

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
             P                                    RN+    +APT +I+ I G S
Sbjct: 408 GEPP----------------------------------RRNATVTTVAPTGSISIIAGCS 433

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P Y   Y            +  L+ EL +   +D A++ ++    G IG+   +P+
Sbjct: 434 SGIEPLYALAYRHVGEFVGIVEPHPLLLRELSRIGKYDPALLHEI-EVTGRIGHRTDLPE 492

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           +L+++   A EI P   I   +  Q+ ++ A S  + L  E +   +   +  A  +G K
Sbjct: 493 ELRRLFRVATEISPEEHIRVQAAVQRHVENAVSKTINLPYEATRDDVRRAFLLAHELGCK 552

Query: 899 TTYYLRSRS 907
                R  +
Sbjct: 553 GVTVYREGA 561


>gi|195977667|ref|YP_002122911.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974372|gb|ACG61898.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit NrdE
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 724

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 165/748 (22%), Positives = 306/748 (40%), Gaps = 78/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  ++    +      + + ++     +         ++
Sbjct: 29  KEAVQRYLEEHVYPQSLSFDSLEEKW-RYLVAHDYYDQEILKAYSAECITEAFTYAYQQK 87

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                 +G    Y  Y L        + + F  R  M              +  + + S 
Sbjct: 88  FSFLSLMGAMKFYQSYALKTLDGSQYL-EHFEDRAVMNALFLANGDPDLVRDLIDQILSR 146

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N+G +   +  SC+L  + D++  I  A+  +  L+K  GG+    T +R
Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLR 206

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
            +G+ I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H ++  FLD ++ 
Sbjct: 207 EVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFLDTKRE 266

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+        E  
Sbjct: 267 NADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAITEEYD 323

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  + +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  SNLC+E
Sbjct: 324 RLVANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVMSNLCSE 383

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I   S++             E   CNLGSIN+     +    +++L +T   A+  +   
Sbjct: 384 IAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAAG-FEQLIATSIRALDHVSRA 442

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            D++C      +K N  + A+GLG M     L   HI Y S EAV+  D     ++++A 
Sbjct: 443 SDVSCA--PSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSAEAVDFTDLFFHTMAYYAF 500

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747
            AS +LA+E+GA++ F+ S +  G +    +   A+ +         R          W 
Sbjct: 501 KASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYGFRVPSVADWQ 560

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL   ++  G+ N++ MA+APT +I+ +   + S+ P    + V+         V ++  
Sbjct: 561 ELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHLGRIYVPAY-- 618

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866
                                       +I DD    +   A+E+ P  +I   +  QK 
Sbjct: 619 ----------------------------QISDDNYAYYERGAYEVGPEPIINIVAAAQKH 650

Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           +DQA SL L++ +  + + L+  Y  A+ +   + YY+R R                 + 
Sbjct: 651 VDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR----------------QDI 694

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +  ++       + +  +  S   C+ C
Sbjct: 695 LEGSEQYEEDTIVALTDTNASGEACQSC 722


>gi|29829003|ref|NP_823637.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           avermitilis MA-4680]
 gi|81720079|sp|Q82KE2|NRDJ_STRAW RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|29606109|dbj|BAC70172.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces avermitilis MA-4680]
          Length = 964

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 122/626 (19%), Positives = 228/626 (36%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+  V D +  I    +E  M+ 
Sbjct: 123 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 182

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 183 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 241

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E+F++ +    +  R   D      +    +  V           ++       
Sbjct: 242 VDHPDIEDFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVE 301

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G +F            R   +V  ++ A +L+RKM    +    P I + D  N     
Sbjct: 302 EGGKF--------GLTSRMTGEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTC 353

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+            F+ ++ A  +   
Sbjct: 354 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGRQSFEVERFAKVVELV 409

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 410 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 469

Query: 689 FISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744
            ++  +   S ELA   G Y  +  +     + +        +A   D+L   +   +  
Sbjct: 470 LMTGTSYKRSAELAAVVGPYDGYARNAQPHQRVMKQHSDANGVAVRVDDLDTPIWAAATE 529

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++    +  G RN+    IAPT TI       +  ++P    + + K    G   +V
Sbjct: 530 AWQDVLHLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 589

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +     +G++ +   +  +  ++   A     I  M  +
Sbjct: 590 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKHEHYEVFDCAMGERSISAMGHV 649

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R         S  
Sbjct: 650 RMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 709

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K    K      T+         +  
Sbjct: 710 KKETEKAEVTAKTEATIREAVEKVVE 735


>gi|253990648|ref|YP_003042004.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782098|emb|CAQ85262.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotid
           reductase r1 subunit) [Photorhabdus asymbiotica]
          Length = 709

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 172/728 (23%), Positives = 294/728 (40%), Gaps = 71/728 (9%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE----G 263
           + I K+ +Y  + A   L      +     K       H+       +F    E+     
Sbjct: 3   SKINKQRDYHALNAMLNLYDSEGNIQFDKDKLAIYHYFHQHVNQNTIFFHDLKEKLDFLQ 62

Query: 264 VKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH--INGSRIEMPQ 318
            +     + +  +D  ++    +  Y + F F  +LG    Y  Y L    N   +E  +
Sbjct: 63  QEGYYETKVLEQYDFAFIKKLFQQAYSKKFRFQTFLGAFKYYTSYSLKTFDNKRYLERYE 122

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL-FNSGTRHPQLSSCFLTTVP 377
                VA+ LA      +  A    + + S  F  +TPT       +  +L SCFL  + 
Sbjct: 123 DRVCMVALTLAQG---NQTLACRLVDEIISGRFQPATPTFLNCGRKQRGELVSCFLLRIE 179

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  I  ++     L+K  GG+    + +R  GA I     +S GV+P +K+  D    
Sbjct: 180 DNMESIGRSINSALQLSKRGGGVACLLSNLREAGAPIKMIENQSSGVVPVMKMLEDAFSY 239

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N 
Sbjct: 240 ANQLGARQGAGAVYLNAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNE 299

Query: 498 GWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              LFSP ++  ++ +   E      Y          + K    I+A   +  +  + FE
Sbjct: 300 DMYLFSPYDIQRVYGVPMSEISITEKYAEMVNNQHIRKSK----INAREFFLTLAEIQFE 355

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608
           +G+P+I ++D  N        G ++ SNLC+EI   +S+ E A            S NL 
Sbjct: 356 SGYPYIMYEDTVNR--VNPIKGRINMSNLCSEILQVNSASEYADDLSYRYIGKDISCNLG 413

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +    +  D    A +I TA+R L  V D+ +  ++   +K N    AIGLG M     L
Sbjct: 414 SMNIAHTMDSPNFALSIETAIRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYL 473

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     +++HA+  S ++A ER  Y   FK S +  G F     
Sbjct: 474 ARERIYYGSEEGIDFTNIYFYIVAYHALRTSNQIAIERNCYFKGFKDSRYASGEFFNKYT 533

Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
               +          ++  +   ++  W ELK  V T G+ N N  A+ PT +I+ I   
Sbjct: 534 ERSWQPQTQKVCQLFEQAGIVIPNQQDWLELKASVITHGIYNQNLQAVPPTGSISYINNS 593

Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++ +   G       F+ N+                            
Sbjct: 594 TSSIHPIVSRIEIRKDGKLGRVYYPAPFMTND---------------------------- 625

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
                + +  A+EI P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G
Sbjct: 626 ---NLEYYKDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKG 682

Query: 897 LKTTYYLR 904
           +KT YY+R
Sbjct: 683 IKTLYYIR 690


>gi|238755710|ref|ZP_04617044.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
 gi|238706077|gb|EEP98460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           ruckeri ATCC 29473]
          Length = 705

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 174/740 (23%), Positives = 300/740 (40%), Gaps = 85/740 (11%)

Query: 195 ESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
            S+L+   + +   L + +     +  ++ AR    +   +     +   +K  +   + 
Sbjct: 2   TSELDYHSLNAMLNLYDADGQIQFDKDRLAARQYFLQHVNQNTVFFHSLQEKIDYLTEEG 61

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFL 307
            Y                  E +  +D  ++ +  +  Y + F F  +LG    Y  Y L
Sbjct: 62  YYE----------------TEVLAQYDFSFIKSLFQQAYAKKFRFPTFLGAFKYYTSYTL 105

Query: 308 H-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
              +G R  E  +     VA+ LA  +       VE    + S  F  +TPT  N G + 
Sbjct: 106 KTFDGQRYLERYEDRICMVALTLAAGDQTLAHHLVE---EMISGRFQPATPTFLNCGKKQ 162

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  A+     L+K  GG+    + +R +GA I     +S GV
Sbjct: 163 RGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGV 222

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 223 IPIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVV 282

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAV 543
           IPD+  +    N    LFSP    D+  +YG        + + +   G  ++ + KI A 
Sbjct: 283 IPDITFELAKNNEEMYLFSP---YDIELVYGVPMSEISVSEKYREMVGNKRIRKSKIRAR 339

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL- 602
             ++ +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   +   E       
Sbjct: 340 EFFQLLAEIQFESGYPYLMFEDTVNKANPI--KGRINMSNLCSEILQVNQPTEYHEDLSY 397

Query: 603 ------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
                  S NL +       D    A TI TA+R L  V D+ +  ++    K N    A
Sbjct: 398 KHIGKDISCNLGSLNIARTMDSPNFAQTIETAIRGLTAVSDMSHIRSVPSIDKGNQESHA 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y S EA++  +     +++HA+ AS +LA ER   +  F  S
Sbjct: 458 IGLGQMNLHGYLARERIYYGSEEALDFTNIYFYTVAYHAMRASNQLAIERASRFKGFDES 517

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    I  +   +            +   ++  W  L+  V   G+ N N  A+
Sbjct: 518 HYASGSYFSKYIEQVWLPKTPRVQTLFTDACIPIPTQQDWAALRHSVMEHGLYNQNLQAV 577

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N                 
Sbjct: 578 PPTGSISYINHATSSIHPIVSQIEIRKEGKIGRVYYPAPYMTN----------------- 620

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +    +  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 621 --------------ENLDYYQDAYQIGPEKMIDTYAAATQHVDQGLSLTLFFRDTATTRD 666

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 667 INKAQIYAWKKGIKTLYYIR 686


>gi|197284314|ref|YP_002150186.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus
           mirabilis HI4320]
 gi|194681801|emb|CAR41038.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           HI4320]
          Length = 708

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 170/735 (23%), Positives = 300/735 (40%), Gaps = 73/735 (9%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S   L+   + +   L +++ N      +       R+     +        H+++    
Sbjct: 4   SIEQLDYHALNAMLNLYDEQGNIQFDKDKLATHHFFRQ-----HVNQNTVFFHDLK---- 54

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +++      + E      +  L      ++     +LG    Y  Y L   +G 
Sbjct: 55  EKLDFLVQQHYYEAQVLEQYDFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGE 114

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA       K A    + + S  F  +TPT  N G +   +L S
Sbjct: 115 RYLERYEDRVCMVALTLAQG---NTKLATHLVDEIISGRFQPATPTFLNCGKKQRGELVS 171

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GV+P +K+
Sbjct: 172 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKM 231

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 232 LEDAFSYANQLGARQGAGAVYLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITF 291

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           +   +N    LFSP +V  ++ +          Y      A+  +    +KI A A ++ 
Sbjct: 292 ELAKRNEDMYLFSPYDVERVYGVPMSEISISEKYTEMVNNAEIRK----KKIKARAFFQT 347

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------ 602
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S+ E            
Sbjct: 348 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGH 405

Query: 603 -GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D    A T+  A+R L +V  +    ++   +K N    AIGLG 
Sbjct: 406 DISCNLGSMNIAMAMDSPDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQ 465

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQG 719
           M     L    I Y S E ++  +     ++++A+ AS +LA E +  +  F+ S +  G
Sbjct: 466 MNLHGYLAREGIYYGSEEGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATG 525

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    +          + ++  +  ++  ++  W +LK  + T G+ N N  AI PT +
Sbjct: 526 EYFDKYLSKQWLPKTQKVHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGS 585

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       F+ N                      
Sbjct: 586 ISYINHSTSSIHPIVAPIEIRKEGKIGRVYYPAPFMTN---------------------- 623

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                    + +  +  A+EI    +I++ ++  + IDQ  SL L+  +  + + ++   
Sbjct: 624 ---------ENRHFYQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQ 674

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 675 IYAWRKGIKTLYYIR 689


>gi|320450284|ref|YP_004202380.1| ribonucleoside-diphosphate reductase subunit alpha [Thermus
           scotoductus SA-01]
 gi|320150453|gb|ADW21831.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermus
           scotoductus SA-01]
          Length = 556

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 157/587 (26%), Positives = 238/587 (40%), Gaps = 106/587 (18%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E  + +F   ++   +  +TP   N G +     SC+ T V DD   I  A+ E  M++K
Sbjct: 51  EGFSRKFQEYMAKGWYSLATPIWANYGLKRGLPISCYGTYVEDDTASILRAVAEIGMMSK 110

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG       +R  GA I   NG+S G   F  + +      NQG  R+G   AYL   
Sbjct: 111 QGGGTSVYLGALRPRGAPIRD-NGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYLPIE 169

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+  +++    +      +     + D +++                        
Sbjct: 170 HPDLEEWFKIQR----EGGEIQSLFWGVSVGDAWLEEAIAGDR----------------- 208

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
              E                          W K+L    E G P+I F+D  N ++P+  
Sbjct: 209 ---EKR----------------------ERWAKVLKSRTEVGIPYIFFRDNANRQAPEVF 243

Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 +H+SNLCTEI L S  EE+ VC L S+NLL       FD  K    + T    L
Sbjct: 244 KKLGKTIHASNLCTEIMLPSGPEESFVCCLSSLNLL------HFDEWKDTDAVETLTIFL 297

Query: 633 DNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D+V+D           +E+A +    +RAIG+G++G+ S L    IP  + EA+ + +  
Sbjct: 298 DSVLDDFIEKAEGIPYMERAVRFAKRYRAIGIGVLGWHSYLQSKGIPLENAEALFLNNLI 357

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + I   A  A                S W +   P D +  L E R             
Sbjct: 358 FKTIREKAEEA----------------SRWLRKRHPEDELADLMERR------------- 388

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                        N+  +AIAPT + + I G VS SI+P   N Y+K          + F
Sbjct: 389 -------------NATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKARIAFRSPF 435

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+ +   +E +   +   +GS+ +++ + D+ K +  T  EI    L+  A  RQK
Sbjct: 436 LEELLQAKGKNEEKVWRSILERNGSVQHLDFLSDEEKDVFKTFSEISQKTLVNLAIARQK 495

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +IDQ QSLNL +  E   K ++ +Y  AW  GLK  YY  S SA   
Sbjct: 496 YIDQGQSLNLVIHPEAPPKDVNELYLHAWRGGLKALYYQFSASAAQA 542


>gi|205353757|ref|YP_002227558.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273538|emb|CAR38524.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628865|gb|EGE35208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 714

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267
           +Y  + A   L      +     ++   A        +   F          + EG    
Sbjct: 15  DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 74

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
            +        ++ L             +LG    Y  Y L   +G R  E  +     VA
Sbjct: 75  AVLARYNRSFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A +  + + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +NA   LFSP
Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
            +V      YGK F     +        +  V +  I+A   ++ +  + FE+G+P+I F
Sbjct: 312 YDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611
           +D  N  +P    G ++ SNLC+EI               +       CNLGS+N+    
Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                D   +  T+ TA+R L  V D+ +  ++      N    AIGLG M     L   
Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D
Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSHYASGDYFTQYLQDD 541

Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 542 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K+
Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690

Query: 900 TYYLR 904
            YY+R
Sbjct: 691 LYYIR 695


>gi|330013347|ref|ZP_08307618.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
 gi|328533535|gb|EGF60258.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           MS 92-3]
          Length = 701

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 272/637 (42%), Gaps = 68/637 (10%)

Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            +LG    Y  Y L        +E      + VA+ LA      E++A +    + S  F
Sbjct: 88  TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLA---RGDEQQARQLTEEILSGRF 144

Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N+G +   +L SCFL  + D++  I  A+     L+K  GG+    + +R  
Sbjct: 145 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 204

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GV+P +K+  D     NQ G R+GA   +L   H D+  FLD R+   
Sbjct: 205 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 264

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529
           D++ R   ++    IPD+  +   ++A   LFSP    D+  LYGK F   A  +   Q 
Sbjct: 265 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 321

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579
              E    R I A  L++++  + FE+G+P+I F+D  N  SP             +  V
Sbjct: 322 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 381

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
            + +   E    +   E   CNLGS+N+         D      TI TAVR L  V D+ 
Sbjct: 382 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 436

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++      N    AIGLG M     L    I Y SPE ++  +     +++HA+  S
Sbjct: 437 DIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 496

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749
           ++LA+ER   ++ F+ S +  G +    +    + + E          ++   R  W +L
Sbjct: 497 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQL 556

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V   G+ N    A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 557 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 616

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                  ++  A+EI P  +I++ +   + +D
Sbjct: 617 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 645

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 646 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 682


>gi|315654324|ref|ZP_07907232.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 51333]
 gi|315491359|gb|EFU80976.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 51333]
          Length = 733

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 168/722 (23%), Positives = 283/722 (39%), Gaps = 83/722 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  +  AR    +   +     +   +K  +              +EEG       E   
Sbjct: 54  DADREAARQYFLQHVNKNTVFFHDLREKLDY-------------LVEEGYYEAETLEQYN 100

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332
              +  L       +     +LG    Y  Y L   +G R  E  +    RV M      
Sbjct: 101 FEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLA 157

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D++  I   +    
Sbjct: 158 RGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSAL 217

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   Y
Sbjct: 218 QLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 277

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           +  +H D+  FLD ++   D++ R   ++    +PD+  +         LFSP    D+ 
Sbjct: 278 ISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVE 334

Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F      E Y    D   I+  +KI A   ++ +  + FE+G+P+I F+D  N 
Sbjct: 335 RVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNR 393

Query: 570 RSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
            +P             +  V   ++  E    +   +   CNLGS+N+     +      
Sbjct: 394 ANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKTLESP----- 448

Query: 620 KLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             A +I  A+R L  V D+     +   ++ N    AIGLG M     L    I Y S E
Sbjct: 449 DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDE 508

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV 732
            ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +       D     A+V
Sbjct: 509 GLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKV 568

Query: 733 RDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           R+    +     +   W  L   +K  G+ N N  AI PT +I+ I   + SI P    +
Sbjct: 569 RELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKI 628

Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            ++     G       +L N+                                   +  A
Sbjct: 629 EIRKEGKIGRVYYPAPYLTND-------------------------------NLDYYQDA 657

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   K +DQ  SL L+  +  + + ++     AW  G+K+ YY+R R 
Sbjct: 658 YEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQ 717

Query: 908 AT 909
           A 
Sbjct: 718 AA 719


>gi|194445580|ref|YP_002042052.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404243|gb|ACF64465.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 714

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 60  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP    D+   YGK F     +        +  V +  I+A   ++ 
Sbjct: 297 FRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+K+ YY+R
Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695


>gi|46255233|ref|YP_006145.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus
           thermophilus HB27]
 gi|46198082|gb|AAS82492.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
           thermophilus HB27]
          Length = 559

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 165/587 (28%), Positives = 245/587 (41%), Gaps = 103/587 (17%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           E    +F   ++   +  +TP   N G R     SC+ T V DD   I  A+ E  M++K
Sbjct: 51  EGFGRKFLEYVARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGMMSK 110

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG       +R  GA I   NG+S G   F  + +      NQG  R+G   AYL+  
Sbjct: 111 QGGGTSLYLGRLRPRGAPIRD-NGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYLDVE 169

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+EE+L +++    +      +     + D +++ +                      
Sbjct: 170 HPDLEEWLSIQR----EHSPVQSLFWGVSVGDRWLEEMIAG------------------- 206

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                           GE +          W KML    E G P++ F+D  N ++P+  
Sbjct: 207 ---------------DGEKRAR--------WAKMLKSRAEVGIPYLFFRDNANQKAPEVF 243

Query: 576 ---VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
                 + +SNLCTEI L SS EE+ VC L S+NLL       ++  K    + T V  L
Sbjct: 244 RALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLVIFL 297

Query: 633 DNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           D+V+D           +E+A +    +RAIGLG++G+ S L    IP  SPEA     E 
Sbjct: 298 DSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRNAEI 357

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
            + I   A  AS  L +                                       R P 
Sbjct: 358 FKTIRERAEEASRWLRK---------------------------------------RHPE 378

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           DEL    +    RN+  +AIAPT + A I G VS SI+P   N Y+K          N F
Sbjct: 379 DELAGVGELKERRNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFKNPF 438

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L   L+++   +E +   +  H+GS+ +++ + D+ K +  T  EI  M L+  A+ RQK
Sbjct: 439 LEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAASRQK 498

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            IDQ QSLNL +  E   + ++ +   AW  GLK  YY  S+S    
Sbjct: 499 HIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQSVAQA 545


>gi|239917557|ref|YP_002957115.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Micrococcus luteus NCTC 2665]
 gi|239838764|gb|ACS30561.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Micrococcus luteus NCTC 2665]
          Length = 725

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 175/679 (25%), Positives = 281/679 (41%), Gaps = 79/679 (11%)

Query: 258 RYIEEGVKARLLHESMMDFDLVY--LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313
            Y+++             F+ V        K +  F F  +LG    Y  Y L   +G R
Sbjct: 75  DYLQKNDYYETETFEQYPFEFVRGLFDRAYKAK--FRFPTFLGAFKFYTSYALKTFDGKR 132

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +     VA+ LA  + E     V   + + +  F  +TPT  NSG +   +L SC
Sbjct: 133 YLERYEDRVAVVALHLARGDQELATHLV---DEMIAGRFQPATPTFLNSGKKQRGELVSC 189

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    T +R  GA I     +S GVIP +K+ 
Sbjct: 190 FLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLL 249

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 250 EDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 309

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549
              +N    LFSP    D+  +YG  F      E Y    D   IK  + ISA   ++ +
Sbjct: 310 LAKKNEDMYLFSP---YDVERVYGVPFSEISVTEKYYEMVDDARIKKTK-ISAREFFQTI 365

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P++ F+D  N  +P    G +  SNLC+EI               +   + 
Sbjct: 366 AEIQFESGYPYVVFEDTVNAANPI--KGRITMSNLCSEILQVSEASEYNEDLSYAHVGQD 423

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D      ++ TA+R L  V  + +  ++    K N    AI
Sbjct: 424 ISCNLGSMNIAKT-----MDSPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAI 478

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L   H+ Y S E ++  +     + FHA+ AS  +A E    +  F+ S 
Sbjct: 479 GLGQMNLHGYLAREHVHYGSEEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSK 538

Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F               +AE+  +  +   ++  W ELK  V   G+ N N  A+ 
Sbjct: 539 YASGEFFDKYTDQEWAPATERVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVP 598

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       +L N                  
Sbjct: 599 PTGSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTN------------------ 640

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                        +  + +  A+EI    +I++ +   + +DQ  SL L+  +  + + L
Sbjct: 641 -------------ENLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDL 687

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 688 NRAQIYAWRKGIKTIYYIR 706


>gi|13508063|ref|NP_110012.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           pneumoniae M129]
 gi|2500208|sp|P78027|RIR1_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|1674206|gb|AAB96160.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           pneumoniae M129]
          Length = 721

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 172/742 (23%), Positives = 307/742 (41%), Gaps = 83/742 (11%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           ++ DLE+ +  ++         Y KV   F ++    E     + KP+    H  +    
Sbjct: 12  TQEDLESYISLNA---------YTKVYGDFKMDLHAVEAYIQEHVKPKTKVFHSTKER-- 60

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
                 ++       +           +       R     ++G    Y+ Y L   +G 
Sbjct: 61  --LDFLVKNDYYDENIINMYSFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGK 118

Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370
             +E  +    RV M +         +A++    + +  F  +TPT  N+   +  +  S
Sbjct: 119 WYLENYED---RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVS 175

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+L  + D++  I  A+     L+K  GG+    T +R  GA I     +S G+IP +K+
Sbjct: 176 CYLLRIEDNMESIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKL 235

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G+R+GA   YL   H DV +FLD ++   D++ R   ++    IPD+  
Sbjct: 236 LEDSFSYANQLGQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITF 295

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                N    LFSP +V + +     +  +    YE  A++   K F  I+A   ++ + 
Sbjct: 296 TLAKNNEEMALFSPYDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVA 353

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------- 599
            + FE+G+P+I F D  N R    H   +  SNLC+EI   S+  E              
Sbjct: 354 ELHFESGYPYILFDDTVNRR--NAHPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDI 411

Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIG 657
            CNLGS+N+     +      + +  ++ A+  LD V  ++        +K N  + A+G
Sbjct: 412 SCNLGSLNIAKAMESGP----EFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALG 467

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L    I Y SPEA++  +     +++HA  AS ELA E+G + +F+ + + 
Sbjct: 468 LGAMNLHGFLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFA 527

Query: 718 QGVFPIDSIGLLAEV-----------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G +    I +  +              +  +   +R  W EL   ++  G+ NS+ +AI
Sbjct: 528 DGSYFDKYIKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAI 587

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + V+         V ++                     
Sbjct: 588 APTGSISYLSSCTPSLQPVVSPVEVRKEGRLGRIYVPAY--------------------- 626

Query: 827 HDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                    ++  D    +   A+E+ P  +I  A+  Q+ +DQA SL L++ +  + + 
Sbjct: 627 ---------QLNKDSYPFYKDGAYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRD 677

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           L+  Y  A+  G  + YY+R R
Sbjct: 678 LNKAYIYAFKKGCSSIYYVRVR 699


>gi|126700616|ref|YP_001089513.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile 630]
 gi|115252053|emb|CAJ69889.1| Ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase large subunit) [Clostridium difficile]
          Length = 699

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 158/699 (22%), Positives = 293/699 (41%), Gaps = 59/699 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  ++  +    +   L  E     I+EG  ++ +        +  + + +   +
Sbjct: 25  KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHK 83

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                Y+ +   Y  Y L  N     +E      + VA+ L       +  A+   + + 
Sbjct: 84  FEFQSYMSVNKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGNKDLALNLADKIV 140

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+   R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + 
Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +
Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E   E Y+
Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC 
Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378

Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638
           EI    +  E              S NL +    N  D   + ST+ TA+R L  V D  
Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I AS
Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498

Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748
           +++A E    +  F  S + +G         +    +    +VR     +   ++  W +
Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++           FL  
Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                   ++ M+                       + +A+ +D   +I+  +  Q  +D
Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647

Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  S  L++ +  + + +   Y  A+  GLK+ YY R++
Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|251781890|ref|YP_002996192.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390519|dbj|BAH80978.1| ribonucleoside-diphosphate reductase alphachain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 728

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 181/780 (23%), Positives = 315/780 (40%), Gaps = 95/780 (12%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE-----------MQCLYPEYFCRYIE 261
            PN + ++   L     ++   + +                     M     E     I+
Sbjct: 3   HPNESYLSFNALTR--FKKTDGSYHFDSDAIAVERYLDEQISPNLVMFPSLEEKLAYLIK 60

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQ 318
           EG   + + +   D  +   A    Y++D+ F   +G    Y  Y L   +G    E  +
Sbjct: 61  EGYYEQAIFDLYPDDVIKE-AFQYAYQQDYRFLNLMGAMKFYQSYALKTLDGKYYLETVE 119

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377
               RV M         +         +    F  +TPT  N+G +   +  SC+L  + 
Sbjct: 120 D---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIE 176

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  I  A+  +  L+K  GG+    T +R +GA I     ++ G++P +K+  D+   
Sbjct: 177 DNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKEIENQATGIVPVMKLLEDSFSY 236

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL   H +V  FLD ++   D++ R   +     IPD+  +   +N 
Sbjct: 237 ANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENK 296

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFET 556
              LFSP    D+  +YGK+        E         + +  ISA  L++ +  + FE+
Sbjct: 297 EMALFSP---YDIKRVYGKDMSDISITEEYNKLLANPAIKKTYISARKLFQLIAELHFES 353

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETAVCNLGS 604
           G+P++ F D  N R+P    G +  SNLC+EI   S               E   CNLGS
Sbjct: 354 GYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGS 413

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
           IN+         D    +  I T++R LD V    +       +K N  + A+GLG M  
Sbjct: 414 INIAEAMT----DAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANHAVGLGAMNL 469

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ F+ S +  G +  
Sbjct: 470 HGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFK 529

Query: 724 DSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +   A+ + +                  W  L + ++T G+ N++ +A+APT +I+ +
Sbjct: 530 QYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYL 589

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+   +     V ++                              
Sbjct: 590 SSCTPSLQPVVAPVEVRKEGNLGRIYVPAY------------------------------ 619

Query: 836 RIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
           +I  +    +   A+E+ P  +I+  +  QK +DQA SL L++ +  + + L+  Y QA+
Sbjct: 620 QINQENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +   + YY+R R                L      D +S   S+       +  EC+ C
Sbjct: 680 KLKCASIYYVRVR-------------QEVLAGSEQYDEDSQLDSVDKNGLTDTINECQSC 726


>gi|307329251|ref|ZP_07608416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces violaceusniger Tu 4113]
 gi|306885150|gb|EFN16171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces violaceusniger Tu 4113]
          Length = 953

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 120/622 (19%), Positives = 230/622 (36%), Gaps = 32/622 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E    L    F  ++P  FN GT +  Q+S+CF+ +V D +  I  
Sbjct: 115 GYFASPADAEIFDHELTYALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILD 174

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  M+ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 175 WYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 233

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H DVE F++ +    +  R   D      +    +  V           
Sbjct: 234 RAAKMVVLDVDHPDVEAFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRV 293

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           ++        G  F +          R   +   ++ A +L+RKM    +    P I + 
Sbjct: 294 NDTFMKAVESGSSFGLR--------SRLTGEPIEEVDAKSLFRKMAEAAWACADPGIQYD 345

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYD 619
           D  N        G + +SN C+E        + + CNL S+NL+         N +FD +
Sbjct: 346 DTINHWHTSPESGRITASNPCSEYMH----LDNSSCNLASLNLMKFLQDDDAGNQRFDAE 401

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           + A  +   +  +D  I       EK  ++    R +G+G     + L      Y S   
Sbjct: 402 RFAKVVELVITAMDISICFADFPTEKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGG 461

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----E 735
             +A      ++  +   S ELA   G Y  +  +               A  +     +
Sbjct: 462 RALAGAITSLMTGTSYKRSAELAAVVGPYDGYARNADAHKRVMKQHSDANAIAKRMDDLD 521

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKS 793
             +   +   W ++ +  +  G RN+    +APT TI  +    +  ++P    + + K 
Sbjct: 522 APVWAAATEAWQDVLRLGEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKL 581

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF-- 849
              G   +VN+ +   LK+    +E + + +      G++ +   +  +  ++   A   
Sbjct: 582 VGGGSMQIVNNTVPKALKRLGYQEEQVEAIVAHIADHGNVIDAPGLKPEHYEVFDCAMGE 641

Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
             I PM  +   +  Q ++  A S  + + E  + ++++ IY + W +G+K     R   
Sbjct: 642 RSISPMGHVRMMAAAQPFLSGAISKTVNMPESATVEEIEEIYFEGWKLGIKALAIYRDNC 701

Query: 908 ATSVEKSTLKGVDGKLNAVPVT 929
                 S  K  +       V 
Sbjct: 702 KVGQPLSAKKKEEKAQAEPEVE 723


>gi|170765802|ref|ZP_02900613.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
 gi|170124948|gb|EDS93879.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           albertii TW07627]
          Length = 714

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 179/732 (24%), Positives = 304/732 (41%), Gaps = 73/732 (9%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254
           ++  L ++  +Y  + A   +  L        + K ++A    M               +
Sbjct: 5   TAERLTQETMDYHALNA---MLNLYDNAGRIQFDKDRQAVDAFMATHVRPNTVTFSSQQQ 61

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                + EG     +        ++ L             +LG    Y  Y L   +G R
Sbjct: 62  RLNWLVNEGYYDEGVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
               + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SCF
Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLADEMLSGRFQPATPTFLNCGKQQRGELVSCF 179

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  
Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+    
Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             +NA   LFSP    D+  +YGK F +IA   Y  +    +    + I+A   ++++  
Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADIAISEYYDELVANKHIRKKYINARDFFQRLAE 356

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604
           + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+             +  S
Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASAYDENLDYARTGHDIS 414

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    +  D    A T+ TA+R L  V D+ +  ++   +  N    AIGLG M  
Sbjct: 415 CNLGSLNIAHTMDSPNFARTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF- 721
              L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G + 
Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534

Query: 722 ----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                 +     A+V +  A +     +R  W +L+  V   G+ N N  A+ PT +I+ 
Sbjct: 535 SQYLQGNWQPKTAKVGELFAHSSITLPTREMWAQLRDDVMRYGIYNQNIQAVPPTGSISY 594

Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++    +G       F+ N                         
Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                 +   ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 684 WRKGIKTLYYIR 695


>gi|323126701|gb|ADX23998.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 728

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 182/780 (23%), Positives = 316/780 (40%), Gaps = 95/780 (12%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE-----------MQCLYPEYFCRYIE 261
            PN + ++   L     ++   + +                     M     E     I+
Sbjct: 3   HPNESYLSFNALTR--FKKTDGSYHFDSDAIAVERYLDEQISPNLMMFPSLEEKLAYLIK 60

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQ 318
           EG   + + +   D  +   A    Y++D+ F   +G    Y  Y L   +G    E  +
Sbjct: 61  EGYYEQAIFDLYPDDVIKE-AFQYAYQQDYRFLNLMGAMKFYQSYALKTLDGKYYLETVE 119

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377
               RV M         +         +    F  +TPT  N+G +   +  SC+L  + 
Sbjct: 120 D---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIE 176

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  I  A+  +  L+K  GG+    T +R +GA I G   ++ G++P +K+  D+   
Sbjct: 177 DNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSY 236

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G+R+GA   YL   H +V  FLD ++   D++ R   +     IPD+  +   +N 
Sbjct: 237 ANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENK 296

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFET 556
              LFSP    D+  +YGK+        E         + +  ISA  L++ +  + FE+
Sbjct: 297 EMALFSP---YDIKRVYGKDMSDISITEEYNKLLANPAIKKTYISARKLFQLIAELHFES 353

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETAVCNLGS 604
           G+P++ F D  N R+P    G +  SNLC+EI   S               E   CNLGS
Sbjct: 354 GYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGS 413

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
           IN+         D    +  I T++R LD V    +       +K N  + A+GLG M  
Sbjct: 414 INIAEAMT----DAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANHAVGLGAMNL 469

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L   H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ F+ S +  G +  
Sbjct: 470 HGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFK 529

Query: 724 DSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +   A+ + +                  W  L + ++T G+ N++ +A+APT +I+ +
Sbjct: 530 QYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYL 589

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + S+ P    + V+   +     V ++                              
Sbjct: 590 SSCTPSLQPVVAPVEVRKEGNLGRIYVPAY------------------------------ 619

Query: 836 RIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
           +I  +    +   A+E+ P  +I+  +  QK +DQA SL L++ +  + + L+  Y QA+
Sbjct: 620 QINQENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +   + YY+R R                L      D +S   S+       +  EC+ C
Sbjct: 680 KLKCASIYYVRVR-------------QEVLAGSEQYDEDSQLDSVDKNGLTDTINECQSC 726


>gi|257215692|emb|CAX82998.1| ribonucleotide reductase M1 [Schistosoma japonicum]
          Length = 384

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 197/374 (52%), Gaps = 15/374 (4%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200
            K+ ++  DG   + + +++   +   C GL +  +    V       +Y G++  +L+ 
Sbjct: 15  DKIYVVKRDGRSEAIHCEKITKRIRALCYGLNESYIDVDAVTKRVVSGLYPGVTTVELDN 74

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
               +  ++I K   YA + AR  +  L +E  +      +         LY     R  
Sbjct: 75  LAAETCASMITKHHEYAILAARLAVSNLHKETKSRFSDVVE--------DLYGYINPRTK 126

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +          + +  +   L N + Y+RD+ + Y G + L   Y L ING   E PQ  
Sbjct: 127 KHSPLVSEDLRNFVRENAERLDNAIDYQRDYTYNYFGFKTLERSYLLKINGKVHERPQHM 186

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379
            MRV++G+    T   + A+E YNL+S   F  ++PTLFNSGT  PQLSSCFL T+ DD 
Sbjct: 187 LMRVSVGIH---TSDIESAIETYNLMSEKWFTHASPTLFNSGTPKPQLSSCFLITMKDDS 243

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           + GI+  L+E A+++K +GG+G +   +R LG +I GTNG+S G++P L+V N TA  V+
Sbjct: 244 IEGIYDTLKECAIISKNAGGIGVNVHNIRSLGTYIAGTNGESNGLVPMLRVFNSTARYVD 303

Query: 440 Q-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           Q G KR GA   YLE WH DV +F+++RKNTG +  R  D+  A WIPDLFM+RV  N  
Sbjct: 304 QGGNKRPGAFAIYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVESNDK 363

Query: 499 WTLFSPDEVSDLHD 512
           WTL  P E   +  
Sbjct: 364 WTLMDPHECPSISR 377


>gi|262043917|ref|ZP_06017005.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038771|gb|EEW39954.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 701

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 272/637 (42%), Gaps = 68/637 (10%)

Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
            +LG    Y  Y L        +E      + VA+ LA      E++A +    + S  F
Sbjct: 88  TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLA---RGDEQQARQLTEEILSGRF 144

Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N+G +   +L SCFL  + D++  I  A+     L+K  GG+    + +R  
Sbjct: 145 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 204

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I     +S GV+P +K+  D     NQ G R+GA   +L   H D+  FLD R+   
Sbjct: 205 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 264

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529
           D++ R   ++    IPD+  +   ++A   LFSP    D+  LYGK F   A  +   Q 
Sbjct: 265 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 321

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579
              E    R I A  L++++  + FE+G+P+I F+D  N  SP             +  V
Sbjct: 322 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 381

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
            + +   E    +   E   CNLGS+N+         D      TI TAVR L  V D+ 
Sbjct: 382 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 436

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++      N    AIGLG M     L    I Y SPE ++  +     +++HA+  S
Sbjct: 437 DIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 496

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749
           ++LA+ER   ++ F+ S +  G +    +    + + E          ++   R  W +L
Sbjct: 497 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRERWRQL 556

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V   G+ N    A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 557 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 616

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                  ++  A+EI P  +I++ +   + +D
Sbjct: 617 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 645

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 646 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 682


>gi|91791299|ref|YP_552249.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
 gi|91701180|gb|ABE47351.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
          Length = 858

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 146/669 (21%), Positives = 250/669 (37%), Gaps = 76/669 (11%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352
            + + +L ++Y         E     F RVA G+A  E    +EK    F++ +      
Sbjct: 19  QVSIDVLLEKYAK--GDEFTET--EIFARVAKGIAQAEQPELREKYERVFFDNMMRGAIG 74

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDW 404
                          L++CF+  V D           GI+ AL+E A   +  GG+G D+
Sbjct: 75  AGRIMSAAGTGIKATLANCFVQPVGDAIQGVDTEGYPGIYEALREAAETMRRGGGVGYDF 134

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G+ + GT   + G   ++ V + +   V   G R+GA    ++  H D+ EF+ 
Sbjct: 135 SRIRPRGSVVKGTASSASGPCSYIDVFDASCKTVESAGARRGAQMGVMKISHPDILEFIT 194

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++    +  R ++ N +  I D FM  V  N  W L    E S      G         
Sbjct: 195 AKR----EVGRWNNFNVSVGIVDGFMAAVEANEMWPLVHKAEPSVEQQRAGAYLRE---- 246

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                    + V+R++ A  +W  ++   ++   P I F D  N+ +   +V  + ++N 
Sbjct: 247 ------SDGLWVYREVPAAEIWDTVMKSCYDFAEPGIVFLDLMNLDNNLSYVETIEATNP 300

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDIN 639
           C E  L         C+LG I L    +        FD +   + ++   R LDNV+ + 
Sbjct: 301 CAEQPLPPY----GCCDLGPIILPKFVSRAFTERAAFDDEGFKAAVKIQTRFLDNVLSVT 356

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +E+ +K     R IG G  G    L +L I Y S E VE +      +   A  AS+
Sbjct: 357 HWPLEQQRKEAEAKRRIGAGFTGLGDMLAMLGIRYNSIEGVEFSRHVALMMRDAAYEASI 416

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA E+G +  F    +                   L     +      LK R++  G+R
Sbjct: 417 DLAIEKGPFPLFDADKY-------------------LKKGTFASRLPKSLKDRIRRHGIR 457

Query: 760 NSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGD----FTVVN---SFLVNEL 810
           NS+ ++IAPT T++       S  I+P +   Y +    GD    + VV+      +  +
Sbjct: 458 NSHLLSIAPTGTVSLAFADNASNGIEPPFALAYTRKKRVGDGHVNYNVVDHAFRVFLETV 517

Query: 811 KQRDLWDEAMISDLKY------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
             ++L    + +  +Y         +    + IP  +     TA E+     +   +  Q
Sbjct: 518 CAQELRAPLLEAVSRYQPAFEVAGKTYQVKDCIPPSI----VTAQEMSAAEHLAVMAAVQ 573

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
             ID A S  + +  +        +Y QAW   LK     R         S         
Sbjct: 574 PLIDTAISKTVNVPEDYPYDDFKNLYMQAWKANLKGLATYRPNKTLGAVLSVGTAATEAK 633

Query: 924 NAVPVTDPN 932
           +        
Sbjct: 634 SVEVKDIDP 642


>gi|255102107|ref|ZP_05331084.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-63q42]
          Length = 699

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 158/699 (22%), Positives = 291/699 (41%), Gaps = 59/699 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  +   +    +   L  E     I+EG  ++ +        +  + + +   +
Sbjct: 25  KEALSSYIEAFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHK 83

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                Y+     Y  Y L  N     +E      + VA+ L       +  A+   + + 
Sbjct: 84  FEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGDKDLALNLADKIV 140

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+   R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + 
Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +
Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E   E Y+
Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC 
Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378

Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638
           EI    +  E              S NL +    N  D   + ST+ TA+R L  V D  
Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I AS
Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498

Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748
           +++A E    +  F  S + +G         +    +    +VR     +   ++  W +
Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++           FL  
Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                   ++ M+                       + +A+ +D   +I+  +  Q  +D
Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647

Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  S  L++ +  + + +   Y  A+  GLK+ YY R++
Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|254976541|ref|ZP_05273013.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-66c26]
 gi|255093926|ref|ZP_05323404.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile CIP 107932]
 gi|255315678|ref|ZP_05357261.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-76w55]
 gi|255518339|ref|ZP_05386015.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-97b34]
 gi|255651456|ref|ZP_05398358.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-37x79]
 gi|260684516|ref|YP_003215801.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile CD196]
 gi|260688174|ref|YP_003219308.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium
           difficile R20291]
 gi|306521279|ref|ZP_07407626.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-32g58]
 gi|260210679|emb|CBA65437.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile CD196]
 gi|260214191|emb|CBE06440.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile R20291]
          Length = 699

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 158/699 (22%), Positives = 291/699 (41%), Gaps = 59/699 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  ++  +    +   L  E     I+EG   + +        +  + + +   +
Sbjct: 25  KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYLKEVINQYSIDVIKNIYDMIDKHK 83

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                Y+     Y  Y L  N     +E      + VA+ L       +  A+   + + 
Sbjct: 84  FEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGDKDLALNLADKIV 140

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+   R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + 
Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +
Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E   E Y+
Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC 
Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378

Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638
           EI    +  E              S NL +    N  D   + ST+ TA+R L  V D  
Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I AS
Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498

Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748
           +++A E    +  F  S + +G         +    +    +VR     +   ++  W +
Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++           FL  
Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                   ++ M+                       + +A+ +D   +I+  +  Q  +D
Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647

Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  S  L++ +  + + +   Y  A+  GLK+ YY R++
Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|321309598|ref|YP_004191927.1| ribonucleotide reductase of class Ib (aerobic) subunit alpha
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801442|emb|CBY92088.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Mycoplasma haemofelis str. Langford 1]
          Length = 700

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 180/700 (25%), Positives = 301/700 (43%), Gaps = 66/700 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E +    K   +    +++ +  E     IE       L  S  D +++ + + +K    
Sbjct: 31  EAIAEYEKYVDENFATDLEGI--ERIRWLIENNFYVADLINSFTDAEVIEIIDLVKSYNF 88

Query: 291 FAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               Y+ ++  YD Y L  +  +  +E      +  A+ L  ++      A +    +  
Sbjct: 89  RFKSYMSIKKFYDSYALRTDDKKRFLERYDDRIIACALFLGRRD---FNFAKKLAKSMIE 145

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G +   +L SCFL  V D L  I   +     L+K  GG+  + + +
Sbjct: 146 QKYQPATPTFSNAGKKRSGELVSCFLLEVDDSLNSINYIISTAMQLSKIGGGVAINLSKL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I      + GVIP +K+  +     +Q G+R GA  AYL  +H D+ EFLD +K
Sbjct: 206 RARGAQIKHIEAAASGVIPVIKILENVFDYADQLGQRPGAGAAYLSIFHWDLIEFLDCKK 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +P+ F+    + A + LF P  V   + ++  + +   + YE 
Sbjct: 266 INADEKSRIQTLSLGLLVPNKFIDLCIEGADYYLFEPYTVFKKYGVHMSDMD-MSKWYEV 324

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A   +I + + ISA  +   +    FE+G+P+I + D  N ++P + +G +  SNLCTE
Sbjct: 325 LAHDPDI-LKKSISARDVLNNIAKTQFESGYPYIIYIDTANKKNPLKKLGQIKMSNLCTE 383

Query: 588 ITLNS------------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS+N+ + F         L  TI  A+R L  V
Sbjct: 384 IFQIQETSTIKDYGDLDDIRYDVSCNLGSLNINSLFEG----EKNLEETIEVAMRALSMV 439

Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            DI+        +K+N    ++GLG M     L    + Y SPEAVE A      I+F +
Sbjct: 440 SDISSIANAPGVRKANSELHSVGLGAMNLAGFLAKNKLHYDSPEAVEFASVLFAAINFFS 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747
           I AS  +AQER   +  F+ S +  GV+ +  +      + ++       M   +R  W 
Sbjct: 500 IKASCLIAQERKKTFEGFEKSDYYSGVYFLKYLENDYLPKSDVVKELFKDMKLPTREDWQ 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           EL K+VK  G+ N+  +AIAPT TI+ +   + SI P    L  +   +        FL 
Sbjct: 560 ELAKKVKECGLYNAYRLAIAPTQTISYLNNSTPSIAPVVDVLETRLYGNSLTYYPMPFL- 618

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                    ++                          + +A+ +D   +I+  S  Q+ +
Sbjct: 619 ---------NKDTWY---------------------YYKSAYLLDQKAIIDMVSAIQEHV 648

Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           DQ  S  LY+ +  S + L   Y  AW  GLK+ YY R++
Sbjct: 649 DQGISTVLYVTNNTSTRDLVRFYIYAWHKGLKSLYYTRTK 688


>gi|269986513|gb|EEZ92798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 756

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 160/641 (24%), Positives = 277/641 (43%), Gaps = 95/641 (14%)

Query: 299 QILYDRYF-LHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCS 354
           +I Y++Y    + G+R E  P   + R++  LA  E + +K+ +E  FY LL  F F+  
Sbjct: 20  RIFYEKYSLSDLEGNRTEKTPIEMWKRISRELASVEKDDKKKDIENNFYRLLEDFKFVPG 79

Query: 355 TPTLFNSGTRHP-QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
              LF +G  H   L +C    +  D L  I    +E A    Y GG+G D + VR   +
Sbjct: 80  GRILFGAGANHKATLLNCHHLPITKDSLEAIHDTAKEMARTYSYGGGVGIDISIVRPERS 139

Query: 413 HIHGTNGKSQGV-IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
                    +   + F+K+ + T   +     R+GA    L+  H D+E F+ ++K    
Sbjct: 140 SSGIMQQDFRLASVSFMKLYSITTG-IIGQTGRRGAWMITLDVTHPDIESFVTIKK---- 194

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           D++     N +  + D FM  V  +  +TL   +E                         
Sbjct: 195 DKKSVRYANISVKVYDDFMDAVENDKIFTLHFKNE------------------------- 229

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--VHSSNLCTEIT 589
            +++  ++I A+ LW+K +     TG P I F D     SP ++     +  +N C+E  
Sbjct: 230 -KVEFKKEIKALDLWKKRIDTAVNTGDPGIMFWDRMKSESPTEYDEKMAIKGTNPCSEQP 288

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINC--HT 642
           L +       C+LG+INL     N   D     ++ L  T+R  VR LDNV+D +   H 
Sbjct: 289 LENY----GACDLGAINLDYFVKNQCTDKAEVDWENLDKTVRYGVRFLDNVLDYSYNRHA 344

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +++        R IGLG+MG  + L  +++ Y S +A+E  D  M+ I   A   S  LA
Sbjct: 345 LKEQADETVYARRIGLGIMGLANMLISMNLRYDSDKAIEFVDSLMKKIKETAYDESSNLA 404

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            E+G++ +F                      ++       +    +L  ++   G+RN+ 
Sbjct: 405 VEKGSFPAFVA--------------------EKHLQRNFVKRLDKKLLDKISKNGLRNAC 444

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFLVNELKQRDLWDEA 819
            + +APT +I+++ GVS  I+P     Y + + S   G F V++ F+   + +  + D++
Sbjct: 445 ILTVAPTGSISSMAGVSGGIEPICALSYTRRSESLSEGKFEVLDPFVKRYMDKFKIRDKS 504

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                                L ++  TA +IDP + ++  +  QK ID + S  + L  
Sbjct: 505 T--------------------LPELFVTAHKIDPFFRVKMQATIQKHIDSSISSTVNLSA 544

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +   + +D IYR AW +G K+    R  S   + K+T +  
Sbjct: 545 DTDAETVDKIYRYAWKLGCKSITVYREGSKDDILKATDEKP 585


>gi|296134979|ref|YP_003642221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thiomonas intermedia K12]
 gi|295795101|gb|ADG29891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thiomonas intermedia K12]
          Length = 811

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 143/633 (22%), Positives = 249/633 (39%), Gaps = 78/633 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
            + L +L ++Y      +          RVA  LA+ E     R+   +    +  F+ +
Sbjct: 5   DISLDVLAEKYAKGDEHTIA----DIHTRVARALAV-EEADPARSEALFRQALADGFVPA 59

Query: 355 TPTLFNSGTRHP-QLSSCFLTTV-------PDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +GT     L +CF+  V        D    I+ AL + A   +  GG+G D++ 
Sbjct: 60  GRIMSAAGTDIQATLINCFVQPVGDSVSDDKDGKPSIYKALAQAAETMRRGGGVGYDFSR 119

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GAH+ GT+ ++ G + F++V + +   V   G R+GA    L   H D+E F+  +
Sbjct: 120 IRPAGAHVGGTHSRASGPLSFMRVFDASCETVESAGSRRGAQMGVLRADHPDIEAFIHAK 179

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                D+    + N +  +   FM+ V  +A   L       D     G           
Sbjct: 180 -----DQGAFKNFNLSVGVSAAFMQAVENDAQIDLVHKARPGDDQLAAG----------- 223

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            +     + V+R + A  LW +++   ++   P I F D  N  +   +     ++N C 
Sbjct: 224 ARQRADGLWVYRSVRARDLWDQIMQSTYDHAEPGILFLDTANADNNLYYCETFEATNPCA 283

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCH 641
           E  L     +   C LGSINL     +       FD +   +  R AVR+LDNV+D+   
Sbjct: 284 EEFLP----DYGCCCLGSINLTRFVRDPFTPQARFDAEGFQAVTRVAVRMLDNVLDVTYW 339

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            + +        R IGLG +G   A  +L + Y S +A   A +    +   A +ASV+L
Sbjct: 340 PLVEQHNEAQNKRRIGLGFLGLGDACVMLGLRYDSDDARRFAADMARTLRDAAYAASVDL 399

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+GA+  F    +    F                    ++   + L+  +   G+RNS
Sbjct: 400 AKEKGAFPLFDAKKYLDSGF--------------------AKRLPEALRADIAAHGIRNS 439

Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           + +A+APT TI+       S  I+P++  +Y +              + +   R+     
Sbjct: 440 HLLAVAPTGTISLAFADNASNGIEPAFSWVYTRKKR-----------MADNTTREYEVAD 488

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
               L    G   ++  +P        TA E+     ++     Q +ID + S  + +  
Sbjct: 489 HAWRLYRSMG--RDMSALPPA----FVTALEMSAADHMKMLQVVQPFIDTSISKTVNVPA 542

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           +        +Y QAW  GLK     R  +    
Sbjct: 543 DYPYDDFKDLYLQAWKAGLKGLATYRPNAVLGA 575


>gi|89900981|ref|YP_523452.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
 gi|89345718|gb|ABD69921.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
          Length = 969

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 154/628 (24%), Positives = 252/628 (40%), Gaps = 80/628 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF-YNLLSSFHFMCSTPT 357
           ++L ++Y      + +++ Q    RVA  LA  E  ++++  E  +       F+ +   
Sbjct: 23  EVLIEKYSKGSEKTIVDVNQ----RVAHALAQVEAPEQQKQWETKFLQALQNGFLPAGRI 78

Query: 358 LFNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVRG 409
              +GT     L +CF+  V D +        GI+ AL E A   +  GG+G D++ +R 
Sbjct: 79  QSAAGTDLAATLINCFVQPVGDSIAHVEDGHPGIYTALTEAAETMRRGGGVGYDFSRIRP 138

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA +  T   + G + +++V + +   V   G R+GA    L   H D+EEF+  +   
Sbjct: 139 RGAWVGSTQSSASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHAK--- 195

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D     + N +  I D FM+ V ++A + L    E        G              
Sbjct: 196 --DTGDLKNFNISVGITDTFMQAVQKDAAFALVHRAEPGPAQKEAGAH----------HV 243

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
               I V+R + A  LW +++   ++   P + F D  N  +   +   + S+N C E  
Sbjct: 244 TDSGIWVYRTLQARELWDQIMRSTYDHAEPGVLFLDHINRDNNLSYCETIASTNPCAEQP 303

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           L         C LGSI+L             FD        R A R+LDNV+D+    + 
Sbjct: 304 LPPY----GCCCLGSIDLTRFIKQPFEKAASFDKAAFVEVARVATRMLDNVLDVTVWPLP 359

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++   + R IGLG  G   AL +L++ Y +  A ++A +  E +   A  ASV+LAQE
Sbjct: 360 QQQEEARSKRRIGLGYTGLGDALVMLNLRYDTQAARDMARDISELMRDTAYDASVDLAQE 419

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RGA+  F   L+  G                    R +      LK+RV+T G+RNS+ +
Sbjct: 420 RGAFPLFNADLYLTGQ-------------------RFASRLPPALKERVRTHGLRNSHLL 460

Query: 765 AIAPTATIANIC--GVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAM 820
           +IAPT TI+       S  I+P++   Y +      G F     + V +   R       
Sbjct: 461 SIAPTGTISLAFADNASNGIEPAFSWSYTRKKRMADGSFK---EYAVEDHAWRLY----- 512

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
                       ++      L     TA E+         +    +ID A S  + +   
Sbjct: 513 -----------RHLYGKDTALTPAFVTALEMSAQAHEAMVAAVAPFIDTAISKTVNVPVN 561

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
                   +Y +AW  GLK     R  S
Sbjct: 562 YPYADFQNLYMEAWQSGLKGLATYRPNS 589


>gi|305680926|ref|ZP_07403733.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659131|gb|EFM48631.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium matruchotii ATCC 14266]
          Length = 719

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 169/670 (25%), Positives = 278/670 (41%), Gaps = 64/670 (9%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EM 316
            +E       +        +  L       +     +LG    Y  Y L   +G+R  E 
Sbjct: 71  LVENKYYDPEVLARYDFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLER 130

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
            +    RV M          + A    + + +  F  +TPT  N G     +  SCFL  
Sbjct: 131 FED---RVCMVALGLADGDTELARHLVDEIMTGRFQPATPTFLNMGKAQRGEPVSCFLLR 187

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D+ 
Sbjct: 188 IEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSF 247

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    
Sbjct: 248 SYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 307

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           N+   LFSP +V     +YGK F      E+Y+   +   I+  +KI+A   ++ +  + 
Sbjct: 308 NSDMYLFSPYDVQ---RVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQ 363

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSIN 606
           FE+G+P+I ++D  N  +P    G V+ SNLC+EI   +S                 S N
Sbjct: 364 FESGYPYIMYEDVVNRANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCN 421

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L +       D    A T+ TA+R L  V +  + H++   +K N    AIGLG M    
Sbjct: 422 LGSLNIAMAMDSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHG 481

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF--- 721
            L    I Y S EA++  +     + +  + AS +LAQER  ++  F+ S +  G +   
Sbjct: 482 YLGRERIHYGSEEALDFTNAYFAAVLYQCLRASNKLAQERGQSFGGFEDSEYASGAYFDR 541

Query: 722 --PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             P D     A+V++    +     +   WD LK  V T G+ N N  A+ PT +I+ I 
Sbjct: 542 FSPADFAPKTAKVQELFDASSITVPTAAEWDALKSDVMTHGLYNRNLQAVPPTGSISYIN 601

Query: 777 GVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             + SI P    + ++     G        + N                           
Sbjct: 602 NSTSSIHPIASRIEIRKEGKIGRVYYPAPHMDNT-------------------------- 635

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
                  +    A+EI    +I++ +   K++DQ  SL L+  +  + + ++     AW 
Sbjct: 636 -----NLEYFQDAYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWR 690

Query: 895 MGLKTTYYLR 904
            G+KT YY+R
Sbjct: 691 KGIKTLYYIR 700


>gi|300769756|ref|ZP_07079638.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300492664|gb|EFK27850.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 721

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 150/683 (21%), Positives = 270/683 (39%), Gaps = 84/683 (12%)

Query: 265 KARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321
              L   ++  +D  ++     Y R  DF F  ++     Y +Y L  +     + + F 
Sbjct: 63  HDYLETPAIDKYDFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFI 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
            RVAM         E  A++  + +    +  +TP+  N+G     +L SCFL    DD+
Sbjct: 122 DRVAMNALYFADGNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDM 181

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I   +     L++  GG+G + + +RG G  I   +G + GV+P +K+  D+    NQ
Sbjct: 182 NSIGRTINSALQLSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQ 241

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+R+GA   YL  +H D+  FL  +K   D++ R   ++    +PD F + +  +A   
Sbjct: 242 LGQRQGAGVVYLSVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMY 301

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHP 559
           LFSP     +   YG  F       E         + +  I A  L  ++  +  E+G+P
Sbjct: 302 LFSP---YGVEREYGVPFSYVDVTKEYDNMVKNPNIRKTKIKARDLENEISKLQQESGYP 358

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEIT------------LNSSSEETAVCNLGSINL 607
           ++   D  N        G +  SNLC+E+                       CNLGS N+
Sbjct: 359 YVVNIDTANR--ENPIDGKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNI 416

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666
           +    +          ++   VR L  V D +    +   +K N     IGLG MG  + 
Sbjct: 417 VNLMTSP-----DFGHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAF 471

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--- 722
                + Y S EAV+  +     +++  + AS E+A+E    + +F+ S +  G +    
Sbjct: 472 FAKNQMEYGSKEAVDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKY 531

Query: 723 --IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              D      +       +   ++  W+ LK+ V   G+ + N MA+AP  +I+ I   +
Sbjct: 532 TTQDWQPKYDKTAALFDSIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTT 591

Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            S+ P    +  +     G       +L N+                             
Sbjct: 592 ASLHPIINRVEERQEKKIGKIYYPAPYLSNDTI--------------------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----------------SG 882
                 + +A++ D   +I+  +  Q+ +DQ  SL L++                   + 
Sbjct: 625 ----NYYKSAYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTT 680

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905
           + L+ +   A+  G+K+ YY+R+
Sbjct: 681 RDLNILRNYAYRKGIKSIYYIRT 703


>gi|255307976|ref|ZP_05352147.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile ATCC 43255]
          Length = 699

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 158/699 (22%), Positives = 292/699 (41%), Gaps = 59/699 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L++  ++  +    +   L  E     I+EG  ++ +        +  + + +   +
Sbjct: 25  KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHK 83

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                Y+     Y  Y L  N     +E      + VA+ L       +  A+   + + 
Sbjct: 84  FEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGDKDLALNLADKIV 140

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+   R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + 
Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +
Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E   E Y+
Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + VG++  SNLC 
Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378

Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638
           EI    +  E              S NL +    N  D   + ST+ TA+R L  V D  
Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I AS
Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498

Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748
           +++A E    +  F  S + +G         +    +    +VR     +   ++  W +
Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L   VK  G+ N+  MA+APT +I+ +   + SI P  + + V++           FL  
Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                   ++ M+                       + +A+ +D   +I+  +  Q  +D
Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647

Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  S  L++ +  + + +   Y  A+  GLK+ YY R++
Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|332162771|ref|YP_004299348.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606877|emb|CBY28375.1| ribonucleotide reductase of class Ib (aerobic),alpha subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325667001|gb|ADZ43645.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 716

 Score =  307 bits (786), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 171/738 (23%), Positives = 304/738 (41%), Gaps = 79/738 (10%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S S+L+   + +   L + +     +  ++ AR    +   +     +   +K  +    
Sbjct: 12  SSSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKLDY---- 67

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
                     +EEG   + + E      +  L      ++     +LG    Y  Y L  
Sbjct: 68  ---------LVEEGYYEKEVLEKYDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKT 118

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +     VA+ LA      ++ A +    + +  F  +TPT  N G +   
Sbjct: 119 FDGKRYLERYEDRVCMVALTLAAG---NQQVARDLVEEIITGRFQPATPTFLNCGKKQRG 175

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP
Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIP 235

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 295

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545
           D+  +    N    LFSP    D+  +YG        + + +    + ++ + KI A   
Sbjct: 296 DITFELAKNNEEMYLFSP---YDVEQVYGVPLSEISVSEKYREMVDDKRIHKSKIKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------A 598
           ++ +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   +S  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNSPTEYNDDLSYRH 410

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
           +    S NL +    +  D      +I TA+R L  V D+ N  ++   +K N    AIG
Sbjct: 411 IGKDISCNLGSLNIAHIMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIG 470

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y S EA++  +     +++HAI AS +LA ER   +  F  S +
Sbjct: 471 LGQMNLHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGNHFKGFDESAY 530

Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +         + +         +  ++   +  W  L++ V   G+ N N  A+ P
Sbjct: 531 ASGEYFTKYTEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVPP 590

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++     G       ++ N+                  
Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                          + +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDIN 679

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 680 KAQIYAWKKGIKTIYYIR 697


>gi|293364079|ref|ZP_06610815.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           alligatoris A21JP2]
 gi|292552569|gb|EFF41343.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           alligatoris A21JP2]
          Length = 726

 Score =  307 bits (786), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 172/742 (23%), Positives = 300/742 (40%), Gaps = 88/742 (11%)

Query: 197 DLETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           D +  +  ++++ +    + +       AR  +             K     +       
Sbjct: 12  DFDEYIALNAKSKLFTFGKNDFFQDIEAARLYM-------------KHNALPNTREFESV 58

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310
            E F   I+       L       D+  L             ++G    Y+ Y L    +
Sbjct: 59  KERFQYLIKHNYYEAELVNKYSFEDIEALREYALSFHFKFTSFMGALKFYNAYCLKSFDD 118

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
              +E  +   +  A+ +        + A      + +  +  +TPT  N+G +   +  
Sbjct: 119 TEYLERYEDRALMNALFIG---NGNVEVAKNTLEEIMTGRYQPATPTFLNAGKKQRGEYI 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC+L  V D++  I  A+  +  L+K  GG+    T +R LGA I     ++ GVIP +K
Sbjct: 176 SCYLLRVEDNMESIARAISTSLQLSKRGGGVALCLTNLRELGAPIKNIENQATGVIPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R+GA   YL   H DV  FLD ++   D++ R   ++    +PD+ 
Sbjct: 236 ILEDSFSYANQLGQRQGAGVVYLSAHHPDVMTFLDSKRENADEKIRIKSLSLGLVVPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N   +LFSP    D+  +Y K F       E         + +  +SA   +  
Sbjct: 296 FELAKKNEDMSLFSP---YDVEKVYKKPFSDISITKEYYNMLNNKAIKKTYVSARKFFTS 352

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------SEE 596
           +  + FE+G+P++ F D  N RS     G +  SNLC+EI   SS              E
Sbjct: 353 IAELHFESGYPYLLFDDTVNDRSALP--GRIIMSNLCSEIAQPSSPSTYNADLSYKTMGE 410

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGS+N+       +   + +  +I     +  N    +  +    +K N  +RAI
Sbjct: 411 DIACNLGSMNIDKLMHAGEKFSESIYRSIYALNHISTNS---DLSSAPTIEKGNKKNRAI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L + HI Y S EAVE  D      ++HA  AS  L ++  G +  F+ + 
Sbjct: 468 GLGAMNLHGFLAVNHIFYNSQEAVEFTDLFFYTFAYHAFKASNRLVKDGFGKFEGFENTK 527

Query: 716 WDQGVFPIDSIGLLAEVRDE-----------LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +  G +      +  E                 ++  ++  W EL K ++  G+ NS+ M
Sbjct: 528 FATGEYFDKYTKVSDEEYKPKHASVAELFRKHNVHIPTKQEWKELSKEIQKTGLANSHLM 587

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPT +I+ + G + S+ P   ++ V+         V ++                   
Sbjct: 588 AIAPTGSISYLSGCTPSLQPVVSDVEVRKEGKLGRVYVPAY------------------- 628

Query: 825 KYHDGSIGNIERIPDDLKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
                      +I D+ K+ +   A+E+ PM +I+  +  QK IDQA SL L++ +  + 
Sbjct: 629 -----------KISDENKEFYKLGAYEVGPMPIIDIVAAAQKHIDQAISLTLFVKDTVTT 677

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           + L+  Y  A+     + YY+R
Sbjct: 678 RDLNKAYIYAFSKKCASIYYVR 699


>gi|262039139|ref|ZP_06012465.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           goodfellowii F0264]
 gi|261746836|gb|EEY34349.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           goodfellowii F0264]
          Length = 712

 Score =  307 bits (786), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 166/705 (23%), Positives = 296/705 (41%), Gaps = 59/705 (8%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
            +L ++              + +     +    Y+ E       ++     ++  +   +
Sbjct: 37  FQLNKDKEAVYSYFVDYVNKNTVFFHNLKEKMDYLIENDYYINFYDMYKFEEIKQVFELV 96

Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     ++     Y  Y L  +     +E  +    R+A+           +A+E+ 
Sbjct: 97  YNKKFRFASFMSASKFYQSYALRDDSGEKFLERYED---RIAIVSLYLAQGDLSKAMEYA 153

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +L +  +  +TPT  NSG +   +L SCFL  + D+L GI  A      L+   GG+  
Sbjct: 154 EMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSGIGYAFDSAMKLSSIGGGVSI 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + VR  G  I G  G++ GV+P +K+  D     NQ G+R GA   YL  +H D+ EF
Sbjct: 214 NLSKVRARGESIKGVEGRASGVLPIMKIMEDIFSYANQLGQRAGAGAVYLNVFHSDINEF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K   D++ R   ++    +PD FM+   ++     F+P  V   +  Y  E +   
Sbjct: 274 LDCKKINVDEKIRIKSLSIGVIVPDKFMELAKEDEICYTFNPHTVFLEYGQYLDEMD-MN 332

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E YE+  D   +K  +KI+A  L  K+     E+G+P++ FKD  N     + +G V  S
Sbjct: 333 EMYEKLVDNPNVKK-KKINARELLIKISQTQKESGYPYLFFKDNANKEHALKEIGNVKFS 391

Query: 583 NLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           NLCTEI         N   EE  +    S NL +       + +++    R A+  L  V
Sbjct: 392 NLCTEIMQLSEVSDINPYFEEDTIRRGISCNLGSLNIVTVMENNRIREATRAAIDSLTTV 451

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D+ N   +   KK+N    ++GLG M     L    I Y S EA++  +     +++++
Sbjct: 452 SDLTNIDIVPSIKKANEELHSVGLGAMNLHGFLAKNFIMYESKEALDFCNVFFMMMNYYS 511

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSRLP 745
           +  S+E+A+ER   +  F  S +  G +    I          + E+ D + +   ++  
Sbjct: 512 LERSMEIARERGEVFKDFDKSEYANGNYFNKYIEKSYFPQTEKIKELFDGIYVP--TKED 569

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W +LK+ V   G+ N+  MAIAP  + + I   + S+ P    + V+            +
Sbjct: 570 WAKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNSTASVMPIVDTIEVREYGDSTTFYPMPY 629

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L N+                                   + +A+++D   +++  S  Q+
Sbjct: 630 LTND-------------------------------NYFFYKSAYDMDQKNILKLVSVIQR 658

Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            +DQ  S  L+     + + L  +Y     +GLK+ YY R+R AT
Sbjct: 659 HVDQGISTILFNKSTDTTRDLAKLYIYGHRLGLKSLYYTRTRKAT 703


>gi|224283651|ref|ZP_03646973.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 698

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E      L       +    
Sbjct: 17  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDGFYAHAESSGF 76

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
               +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + S  
Sbjct: 77  EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEMLSGA 135

Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N G     +  SCFL  + D +  I   +     L+K  GG+    + +R 
Sbjct: 136 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 195

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++  
Sbjct: 196 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 255

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   +     IPD+  +   + A   LFSP    D   +YGK F           
Sbjct: 256 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 312

Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
              + ++ +  I A   +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI
Sbjct: 313 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 370

Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                          S       CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 371 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 424

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +   +++N    AIGLG M     L    I Y S EA++  D     +++HA 
Sbjct: 425 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 484

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740
            AS  LA E G  +  F  S + +     +      + R              +   +  
Sbjct: 485 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 544

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799
            +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++     G  
Sbjct: 545 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 604

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
               +++ N                               +  + +  A+EI    ++++
Sbjct: 605 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 633

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   + +DQ  SL L+  +  + + L+     AW  G+KT YY+R
Sbjct: 634 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 679


>gi|292489179|ref|YP_003532066.1| ribonucleoside-diphosphate reductase subunit alpha [Erwinia
           amylovora CFBP1430]
 gi|292900296|ref|YP_003539665.1| ribonucleoside-diphosphate reductase 2 subunit alpha [Erwinia
           amylovora ATCC 49946]
 gi|291200144|emb|CBJ47270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Erwinia
           amylovora ATCC 49946]
 gi|291554613|emb|CBA22272.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora
           CFBP1430]
          Length = 716

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 169/726 (23%), Positives = 293/726 (40%), Gaps = 78/726 (10%)

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVKARLLHESMM--- 274
             A    +      +  +Y         + Q    +YF +++    V+   + E +    
Sbjct: 10  EAAEATADYHALNAMLNLYDDNGHIQFEKDQDATRQYFIQHVIPNSVQFNSIAERLQFLV 69

Query: 275 ---DFDLVYLANDL-----------KYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
               ++   L                  R     +LG    Y  Y L   +G R    ++
Sbjct: 70  AEGYYEAEVLNAYPFEFVCSLFARATARRFRFQTFLGAWKFYTSYTLKTFDGKRY--LES 127

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPD 378
           F  RV M         +  A+   + + S  F  +TPT  N G +   +L SCFL  + D
Sbjct: 128 FTERVCMVALTLAKGDQPLALALADEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIED 187

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     
Sbjct: 188 NMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYA 247

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N  
Sbjct: 248 NQLGARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQQ 307

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETG 557
             LFSP +V  ++ L    F     + +      + ++ R  I+    ++ +  + FE+G
Sbjct: 308 MALFSPYDVERIYAL---PFADISISEKYHEMLADTRIRRTFINPREFFQTLAEIQFESG 364

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAH 610
           +P+I F+D  N  +P    G ++ SNLC+EI   ++  E         +    S NL + 
Sbjct: 365 YPYIMFEDTVNRANPVH--GRINMSNLCSEILQVNTPTEYNDDLSYRHIGKDISCNLGSL 422

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  D    A T+  AVR L  V D  + H++   ++ N    AIGLG M     L  
Sbjct: 423 NIAHAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAR 482

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y S   ++  +     +++HA+  S +LA+ER   +S F  S +  G +    +G 
Sbjct: 483 EGIEYGSEAGLDFTNIYFYTVTYHALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQ 542

Query: 729 LAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
             + R         +  +   ++  W  LK+ V   G+ N N  AI PT +I+ I   + 
Sbjct: 543 RWQPRTAQVAALFAKAGIEIPTQQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATS 602

Query: 781 SIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + ++    +G       F+ N+                              
Sbjct: 603 SIHPIVSRIEIRKEGKTGRVYYPAPFMNND------------------------------ 632

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
             +  +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K
Sbjct: 633 -NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIK 691

Query: 899 TTYYLR 904
           T YY+R
Sbjct: 692 TLYYIR 697


>gi|146329736|ref|YP_001209517.1| ribonucleotide-diphosphate reductase subunit alpha [Dichelobacter
           nodosus VCS1703A]
 gi|146233206|gb|ABQ14184.1| ribonucleotide reductase, alpha subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 573

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 162/638 (25%), Positives = 264/638 (41%), Gaps = 100/638 (15%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEK 337
             L   +  +R   F       L+ +    ++G+  E   +    R A  L   +     
Sbjct: 16  NKLLPMISSDRPDFFWLNDDSRLFLQRGYLLDGTSAEKRMKEIVARAAEILPFAD----- 70

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
               F++ L+  ++  S+P   N G       SCF + + D +Y I     E  M++K  
Sbjct: 71  FEQRFFHYLARGYYSFSSPIWSNFGLARGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIG 130

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG    +  +R  G+ I   NGKS G   F K+ +     ++QG  RKG    Y++  H 
Sbjct: 131 GGTSAYFGAIRPRGSDIRD-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHG 189

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+EE+LD+      +      M     I   ++  +                        
Sbjct: 190 DIEEWLDIHT----EGNPIQLMYYGVCISHQWLAEMKAGDS------------------- 226

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            E                         +W K+L    ETG P++ FKD  N   P  +  
Sbjct: 227 -EKR----------------------RIWAKVLQRKSETGIPYLFFKDNANAGRPDVYKD 263

Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               +++SNLCTEI L +S EE+ VC L S+NLL +      D  +L      AV     
Sbjct: 264 LNLPIYASNLCTEIMLPASEEESFVCCLSSMNLLYYEEWKNTDAVELLVYFLDAVMTEFI 323

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
               +   +E+A++    HRA+GLG++G+ S L   H+P+ S  A++  +E  + +    
Sbjct: 324 EKSADLPFLERARRFAMRHRALGLGVLGWHSYLQSQHLPFDSLAAMQKNNEIFQLLQRKT 383

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +SAS  LA+  G     +G                                         
Sbjct: 384 LSASRTLAEHLGEPEILRG----------------------------------------- 402

Query: 755 TIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+  M++APT + + I G VS S++P   N +VK       T  N FLV  L ++
Sbjct: 403 -YGRRNTTLMSVAPTKSSSFILGSVSPSVEPLKSNYHVKDLAKIKTTYKNPFLVALLAEK 461

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
            L  E     +  +DGS+ ++  + D+ K I  T  EI+ + +I+ A++RQK+IDQ QS+
Sbjct: 462 GLDTETTWESILLNDGSVQHLPDLSDEEKAIFKTFSEINQLSIIQQAAQRQKYIDQGQSI 521

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           NL +  +   + ++ +Y  A  +G+K+ YY  S SA  
Sbjct: 522 NLMIHPDTPTRDINQLYLTAAELGVKSIYYQHSMSAAQ 559


>gi|85860286|ref|YP_462488.1| ribonucleoside-diphosphate reductase subunit alpha [Syntrophus
           aciditrophicus SB]
 gi|85723377|gb|ABC78320.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus
           aciditrophicus SB]
          Length = 551

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 156/624 (25%), Positives = 252/624 (40%), Gaps = 98/624 (15%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNL 345
             +   L +L +RY +    G+ +E P+  F RVA  ++  E    +         FY +
Sbjct: 6   QLDDNALLVLRERYLIRDEAGTLLETPEELFRRVACSVSQGENNDPEGRSAEMEEAFYEM 65

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           ++S  F+ ++PTL N+G    QL++CF+  V D L  IF +++  A + +  GG G  ++
Sbjct: 66  MTSLEFLPNSPTLMNAGRPLGQLAACFVLPVEDSLDSIFDSVKLTAKIHQTGGGTGFSFS 125

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F++V N    A+ QGG R+GA    L   H D+ EF+ +
Sbjct: 126 RLRPKNDVVKSTMGVASGPVSFIRVFNCATEAIKQGGTRRGANMGILRIDHPDIMEFVAI 185

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           ++    D     + N +  I D FM+   +N    L +P                     
Sbjct: 186 KR----DPAELTNFNLSVAITDEFMRSYEENRDVALINPRT------------------- 222

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    K   K++A  L R +    + +G P + F D  N  +P  HVG + ++N C
Sbjct: 223 --------KKAAGKVNARELLRFIAEAAWASGEPGVIFLDAINRANPTPHVGEIEATNPC 274

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E  L         C LGSINL     N   D+ +L       VR LD+V++++ +  E+
Sbjct: 275 GEQPLLPY----ESCCLGSINLSRIVRNGGIDWQRLQKLTHLGVRFLDDVVEVSTYPSEE 330

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +     +R IGLG+MGF   L  L IPY SP+A     E +  I   +  AS  LA++R
Sbjct: 331 IRAMTSGNRKIGLGVMGFAHLLIRLGIPYDSPDAERTGGEIIRLIERESKIASNRLAEKR 390

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G + +FKGS+W                R  L     +                       
Sbjct: 391 GPFPNFKGSVW---------------DRKNLLQRNATTTTIAPTGTL------------- 422

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
                  + + G S  ++P Y   Y +    G    V   L  + K R            
Sbjct: 423 -------SILAGTSSGVEPIYDIRYKRILPGGIEVEVEDPLWRKAKDR------------ 463

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                        +  +++   A+E+ P   +      Q  +D A S  + L E  +   
Sbjct: 464 ---------PDADELRRRLFRKAYEVSPFAHLNIQRTFQSSVDNAVSKTVNLPETATADD 514

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSA 908
           +  IY  A+ MGLK T   R++S 
Sbjct: 515 ILDIYVAAYRMGLKGTTVFRNKSR 538


>gi|22125125|ref|NP_668548.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           KIM 10]
 gi|45442236|ref|NP_993775.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808371|ref|YP_652287.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Antiqua]
 gi|108811298|ref|YP_647065.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Nepal516]
 gi|145598905|ref|YP_001162981.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Pestoides F]
 gi|165925303|ref|ZP_02221135.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165939924|ref|ZP_02228462.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166008354|ref|ZP_02229252.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212442|ref|ZP_02238477.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167398490|ref|ZP_02304014.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421233|ref|ZP_02312986.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423147|ref|ZP_02314900.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167468721|ref|ZP_02333425.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           FV-1]
 gi|170023363|ref|YP_001719868.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis YPIII]
 gi|229838203|ref|ZP_04458362.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895451|ref|ZP_04510623.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Pestoides A]
 gi|229898685|ref|ZP_04513830.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901544|ref|ZP_04516666.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Nepal516]
 gi|270489730|ref|ZP_06206804.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294504448|ref|YP_003568510.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|21957984|gb|AAM84799.1|AE013726_2 ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis KIM 10]
 gi|45437100|gb|AAS62652.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774946|gb|ABG17465.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Nepal516]
 gi|108780284|gb|ABG14342.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Antiqua]
 gi|145210601|gb|ABP40008.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Yersinia pestis Pestoides F]
 gi|165912143|gb|EDR30782.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165922910|gb|EDR40061.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165992736|gb|EDR45037.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206373|gb|EDR50853.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960722|gb|EDR56743.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167050994|gb|EDR62402.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057317|gb|EDR67063.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|169749897|gb|ACA67415.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|229681473|gb|EEO77567.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Nepal516]
 gi|229688233|gb|EEO80304.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694569|gb|EEO84616.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229701606|gb|EEO89633.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis Pestoides A]
 gi|262366434|gb|ACY62991.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D182038]
 gi|270338234|gb|EFA49011.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis KIM D27]
 gi|294354907|gb|ADE65248.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           Z176003]
 gi|320016141|gb|ADV99712.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 716

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 170/738 (23%), Positives = 300/738 (40%), Gaps = 79/738 (10%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S+S+L+   + +   L + +     +  ++ AR    +   +     +   +K  +    
Sbjct: 12  SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKIDY---- 67

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
                     IEEG   + + +      +  L      ++     +LG    Y  Y L  
Sbjct: 68  ---------LIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKT 118

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +    RV M      T  +  A E    + S  F  +TPT  N G +   
Sbjct: 119 FDGKRYLERYED---RVCMVALTLATGNQTLARELVEEIISGRFQPATPTFLNCGKKQRG 175

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP
Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 235

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 295

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545
           D+  +    N    LFSP    D+  +YG        + + +      ++ + KI A   
Sbjct: 296 DITFELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--- 602
           ++ +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   ++  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRR 410

Query: 603 ----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
                S NL +       D      +I  A+R L  V ++ N  ++   +K N    AIG
Sbjct: 411 IGKDISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIG 470

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    + Y S EA++  +     +++HAI AS +LA ER   +  F  S +
Sbjct: 471 LGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDY 530

Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G F    I    + +         +  +   ++  W  L++ V   G+ N N  A+ P
Sbjct: 531 ASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPP 590

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++     G       ++ N+                  
Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                          + +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 679

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 680 KAQIYAWKKGIKTIYYIR 697


>gi|331695964|ref|YP_004332203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950653|gb|AEA24350.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudonocardia dioxanivorans CB1190]
          Length = 954

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 129/630 (20%), Positives = 226/630 (35%), Gaps = 27/630 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    + + E  A E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 127 GYFATDEDAEIFAHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDTMESILN 186

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 187 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 245

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF++ +       R   D      +    +  V         + 
Sbjct: 246 RAAKMVVLDVDHPDIEEFVETKAKEEAKVRVLRDAGFDMDLGGADITSVQ------YQNA 299

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    + D + +  E       R    GE  V   + A  L+R +    +E   P I + 
Sbjct: 300 NNSVRVTDEFMRAVEEGTSFGLRGRMTGE--VIDSVDARTLFRGIAQAAWECADPGIQYD 357

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623
              N        G + +SN C+E        + + CNL S+NLL     +  FD ++   
Sbjct: 358 GTINDWHTTPESGRITASNPCSEYMH----LDNSSCNLASLNLLTFLGDDGMFDAERFRR 413

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I       E    +    R +G+G     + L      Y S     +A
Sbjct: 414 AVEFIITAMDISICFADFPTEPIGDTTRKFRQLGIGYANLGALLMATGHAYDSEGGRALA 473

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
                 ++  A   S ELA   G Y  +  +                +VR   A     R
Sbjct: 474 ASITSLMTGAAYKRSAELAGVVGPYEGYARNAEGHQRVMRKHAAANDDVRTLAASTHIHR 533

Query: 744 L---PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
           L    W E     +  G RN+    +APT TI  +    +  I+P    + + K    G 
Sbjct: 534 LATITWKECLAIGERNGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGS 593

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDP 853
             +VN  +   L++     E   + ++Y    G + +   +  +  ++   A     I P
Sbjct: 594 MQIVNQTVPRALQKLGYQAEQAEAIVEYVAEHGHVIDAPGLRTEHYEVFDCAMGERSIAP 653

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +   +  Q ++  A S  + + E  S + ++ IY + W +GLK     R        
Sbjct: 654 MGHVRMMAAVQPFLSGAISKTVNMPEAASVEDVERIYMEGWKLGLKALAIYRDNCKVGQP 713

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            S  K      +A              +P 
Sbjct: 714 LSAGKEARKDASADAEAPVEYRPVRRRLPK 743


>gi|259508043|ref|ZP_05750943.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium efficiens YS-314]
 gi|259164384|gb|EEW48938.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium efficiens YS-314]
          Length = 701

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 159/681 (23%), Positives = 274/681 (40%), Gaps = 74/681 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LH 308
            E     +E     + +   +  +D  Y+ +  K    + F +      Y  Y       
Sbjct: 47  HEKLDYLVENNYYEKEV---LDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKT 103

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +     VA+ LA       + A    + + +  F  +TPT  NSG     
Sbjct: 104 FDGRRYLERFEDRVCMVALTLA---DGDRETANALVDEIMTGRFQPATPTFLNSGKAQRG 160

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +  SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP
Sbjct: 161 EPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIP 220

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 221 VMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIP 280

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545
           D+  +   +N    LFSP    D+  +YGK F              + ++ +  I+A   
Sbjct: 281 DITFELAKRNDDMYLFSP---YDVERIYGKPFADISVTELYNEMVDDDRIRKTKINARQF 337

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSE 595
           ++ +  + FE+G+P+I F+D  N  +P             +  V + +   E        
Sbjct: 338 FQTLAEIQFESGYPYIMFEDTVNEANPIEGRVTHSNLCSEILQVSTPSTYHEDLSYDEVG 397

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
           E   CNLGS+N+         D    + TI TA+R L  V +  +  ++   +K N    
Sbjct: 398 EDISCNLGSLNIAMAM-----DSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAH 452

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           AIGLG M     L   HI Y S E ++  +     + +  + AS ++A+ER   +++F+ 
Sbjct: 453 AIGLGQMNLHGYLGREHIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFEN 512

Query: 714 SLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  GV+               + E+     ++  +   W +LK  V   G+ N    A
Sbjct: 513 SDYASGVYFDRFDPAEFAPKTDKVKELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQA 572

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824
           + PT +I+ I   + SI P    + ++     G        + N+               
Sbjct: 573 VPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND--------------- 617

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                             +    A+EI    +I++ +   K++DQ  SL L+  +  + +
Sbjct: 618 ----------------NLEYFQDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTR 661

Query: 884 KLDFIYRQAWLMGLKTTYYLR 904
            ++     AW  G+KT YY+R
Sbjct: 662 DINRAQIYAWRKGIKTLYYIR 682


>gi|237651588|ref|YP_002899058.1| putative ribonucleoside-diphosphate redutase [Roseophage DSS3P2]
 gi|220898058|gb|ACL81316.1| putative ribonucleoside-diphosphate redutase [Silicibacter phage
           DSS3phi2]
          Length = 776

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 153/674 (22%), Positives = 261/674 (38%), Gaps = 84/674 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQ---AFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349
           QI   +Y            Q     + R+A              E+E     FYN L  F
Sbjct: 13  QIWNQKYRFKTERDGFISDQNVVDTWGRIAQACSNLPHFHNNHAEREALEARFYNALYDF 72

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            F+ +      +GT R+  L +C++  T+PD L GIF  L+E A+  +  GG+G D++ +
Sbjct: 73  KFLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    S G + F+ V +     +   G R+GA+ A +   H D+ EF+  ++
Sbjct: 133 RPKGALVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMEFVTAKQ 192

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  R  + N +    D FM+ V  ++ W L                          
Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVAADSDWDLMF------------------------ 224

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                + KV++ I A  LW  +L   +    P + F D  N  +    +  + ++N C E
Sbjct: 225 -----DGKVYQTIKAKELWETILWNTYNYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
             L         C LGS+NL  H          + D   L  ++RT VR+LD+V++ +  
Sbjct: 280 QPLPPY----GACLLGSVNLAKHVVFPFVKGQAEIDMKALEESVRTGVRILDSVVETSLF 335

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E  +      R  GLG+ G   AL +    Y + +AV   D  M  I+  A   S+++
Sbjct: 336 PLEAQRDEARFKRRQGLGVTGLADALFMTGHRYGNQQAVNFTDTIMMNIAIWAYEESIQM 395

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E G                     +  E R++   +   +   + +K  +   G+RNS
Sbjct: 396 AKEMGPAPCL----------------VPLEAREKFIQSGFMQRMPEYIKDDILEWGIRNS 439

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           + +++APT TI+   G  S   +P +   Y +   + D T          +   ++D A+
Sbjct: 440 HLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT---------KRTETVYDYAV 490

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +   ++      +        +   ATA ++ P   I   +  QKW+D + S  + L  +
Sbjct: 491 LKFEEHFG--ENDNPEAIWWWENYMATAQDLTPSDHIVMQAVLQKWVDSSISKTVNLPED 548

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
            S      +Y  A+  G K     R    T    S ++  + K     V +P        
Sbjct: 549 ISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLS-VETKEEKPVETKVAEPAYDGDMRV 607

Query: 940 IPSSCTSDTECEVC 953
           +      D     C
Sbjct: 608 MSRPSVIDGTTYKC 621


>gi|311064960|ref|YP_003971686.1| ribonucleoside-diphosphate reductase subunit alpha NrdE
           [Bifidobacterium bifidum PRL2010]
 gi|310867280|gb|ADP36649.1| NrdE Ribonucleoside-diphosphate reductase alpha chain
           [Bifidobacterium bifidum PRL2010]
          Length = 731

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E      L       +    
Sbjct: 50  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDDFYAHAESSGF 109

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
               +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + S  
Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEMLSGA 168

Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N G     +  SCFL  + D +  I   +     L+K  GG+    + +R 
Sbjct: 169 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 228

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++  
Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   +     IPD+  +   + A   LFSP    D   +YGK F           
Sbjct: 289 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 345

Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
              + ++ +  I A   +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI
Sbjct: 346 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403

Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                          S       CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +   +++N    AIGLG M     L    I Y S EA++  D     +++HA 
Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740
            AS  LA E G  +  F  S + +     +      + R              +   +  
Sbjct: 518 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799
            +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++     G  
Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
               +++ N                               +  + +  A+EI    ++++
Sbjct: 638 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   + +DQ  SL L+  +  + + L+     AW  G+KT YY+R
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712


>gi|227358545|ref|ZP_03842870.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           ATCC 29906]
 gi|227161256|gb|EEI46330.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis
           ATCC 29906]
          Length = 714

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 173/733 (23%), Positives = 303/733 (41%), Gaps = 69/733 (9%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           S   L+   + +   L +++ N      +       R+     +        H+++    
Sbjct: 10  SIEQLDYHALNAMLNLYDEQGNIQFDKDKLATHHFFRQ-----HVNQNTVFFHDLK---- 60

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +++      + E      +  L      ++     +LG    Y  Y L   +G 
Sbjct: 61  EKLDFLVQQHYYEAQVLEQYDFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGE 120

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA       K A    + + S  F  +TPT  N G +   +L S
Sbjct: 121 RYLERYEDRVCMVALTLAQG---NTKLATHLVDEIISGRFQPATPTFLNCGKKQRGELVS 177

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GV+P +K+
Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKM 237

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITF 297

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +   +N    LFSP +V  ++ +   E     E Y    +  EI+  +KI A A ++ + 
Sbjct: 298 ELAKRNEDMYLFSPYDVERVYGVPMSEIS-ISEKYTEMVNNAEIRK-KKIKARAFFQTLA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------G 603
            + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S+ E              
Sbjct: 356 EIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDI 413

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +       D    A T+  A+R L +V  +    ++   +K N    AIGLG M 
Sbjct: 414 SCNLGSMNIAMAMDSPDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMN 473

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVF 721
               L    I Y S E ++  +     ++++A+ AS +LA E +  +  F+ S +  G +
Sbjct: 474 LHGYLAREGIYYGSEEGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEY 533

Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               +          + ++  +  ++  ++  W +LK  + T G+ N N  AI PT +I+
Sbjct: 534 FDKYLSKQWLPKTQKVHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSIS 593

Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++     G       F+ N                        
Sbjct: 594 YINHSTSSIHPIVAPIEIRKEGKIGRVYYPAPFMTN------------------------ 629

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  + +  +  A+EI    +I++ ++  + IDQ  SL L+  +  + + ++     
Sbjct: 630 -------ENRHFYQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIY 682

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 683 AWRKGIKTLYYIR 695


>gi|113868364|ref|YP_726853.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           eutropha H16]
 gi|113527140|emb|CAJ93485.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           eutropha H16]
          Length = 827

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 151/634 (23%), Positives = 256/634 (40%), Gaps = 80/634 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTP 356
           ++L ++Y      S  ++ Q    RVA  LA    E ++E  +  F        F+ +  
Sbjct: 20  EVLIEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWSARFL-WAQENGFVPAGR 74

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDD-------LYGIFGALQENAMLAKYSGGLGNDWTPVR 408
               +GT     L +CF+  V D           I+ A+ + A   +  GG+G D++ +R
Sbjct: 75  INSAAGTGIQATLINCFVQPVGDSVSEPREGRPSIYTAVAQAAETMRRGGGVGYDFSAIR 134

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +  T+ ++ G + F+KV + +   V   G R+GA    L   H D+E F+  +  
Sbjct: 135 PAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-- 192

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+    + N +  + D FM+ V  +    L    E        G     AY   + Q
Sbjct: 193 ---DKGDLSNFNISIGVTDAFMQAVQADGEVELVHEAEPGADMIAAG-----AYRRDDGQ 244

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  V+R++ A  LW +++   ++   P I F    N  +   +   + ++N C E 
Sbjct: 245 ------WVYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNNLYYCERIEATNPCAEQ 298

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L S       C LGSINL             FD+D  A  +R A R+LDNV+D+    +
Sbjct: 299 PLPSY----GCCCLGSINLTRFVRQPFSPQAEFDFDAFAEVVRVATRMLDNVLDVTFWPL 354

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +   H  R +GLG +G  SAL +L + Y +  A ++A    E +   A  AS ELA 
Sbjct: 355 PEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARISERMRDDAYLASTELAV 414

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GA+  F  + +                      +  +    + L+  +   G+RNS+ 
Sbjct: 415 EKGAFPLFDANAY--------------------LQSGFAGRLPERLRDAIARNGLRNSHL 454

Query: 764 MAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           ++IAPT TI  A     S  I+P++   Y +              + +   R        
Sbjct: 455 LSIAPTGTITLAFADNASNGIEPAFSWTYNRKKR-----------MPDNSYRSFEVADHA 503

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             L  H G   ++ ++PD       TA ++  +  +      Q +ID + S  + +  + 
Sbjct: 504 WRLYRHMG--ADMAQLPDA----FVTALQMSALDHMRMLEAVQPYIDTSISKTVNVPEDY 557

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
             +    +Y +AW  GLK     R  S      S
Sbjct: 558 PYEAFRNLYLEAWKAGLKGLATYRPNSVLGAVLS 591


>gi|12084868|ref|NP_073333.1| ribonucleotide reductase subunit 1 [Meleagrid herpesvirus 1]
 gi|11095872|gb|AAG30079.1|AF282130_42 UL39 ribonucleotide reductase large subunit [Meleagrid herpesvirus
           1]
 gi|12025151|gb|AAG45777.1|AF291866_44 UL39 ribonucleotide reductase, large subunit [Meleagrid herpesvirus
           1]
          Length = 820

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 170/684 (24%), Positives = 276/684 (40%), Gaps = 76/684 (11%)

Query: 285 LKYERDF-----AFEYLGLQIL--YDRYFLHINGSRIEMPQAFFMR-------------- 323
           +   R +       + LGLQ    Y+ Y + + G + E    FF+R              
Sbjct: 156 MDMLRFYGNIYPQLKRLGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKP 215

Query: 324 -VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-- 380
            +A         +      F+  L+   F+ STP +   G      +SC+L         
Sbjct: 216 LIASLTNGSANWRTAFT-SFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQ 274

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I     +        GG+G     V            +  G++  LK+ +   VA N 
Sbjct: 275 DTIKVITNDVVPHLLARGGIGISLQHV-----------NQKSGLMHVLKLIDSLIVATNV 323

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV------ 493
              R   VC YLE WH D+   L +R     ++ RR  ++  A W  DL  KR       
Sbjct: 324 NESRPTGVCVYLEPWHSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNG 383

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N  WTLF     S L  LYG +FE+ YE  E+     E     +I    +   ++   
Sbjct: 384 EKNVMWTLFD-SRASILSKLYGDKFEVEYERLEK-----EGIGVAQIPIRDMMFAIIKSA 437

Query: 554 FETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             TG P+I FKD CN        G  +  SNLCTEI   ++     VC L SINL     
Sbjct: 438 ASTGSPFILFKDACNRHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVR 497

Query: 613 N----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +FD+D L   +R A    + ++D +     K++     +R+IG+G+ GF +A+ 
Sbjct: 498 RVNGECKFDFDALRHAVRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAML 557

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727
            L +         +  +  E +   A++ S E  +     +  F  S + QG    D   
Sbjct: 558 SLGLDLEDGAVRALNKQIFELMLLEAMTVSCEFCERGLPPFPDFSDSYYAQGRLHFDGWD 617

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                    ++  T+   W  L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + 
Sbjct: 618 ---------SVELTAPEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFS 668

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI-----GNIERIPDDLK 842
           N++ K   +G+    NS L+ EL+Q    +E           S        +   P+  +
Sbjct: 669 NMFSKVTSAGELLRPNSQLMRELRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTR 728

Query: 843 KI-HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMG 896
            + + TAFE D   LI+  + R  ++DQ+QS+ L++ E +       ++  +   A+  G
Sbjct: 729 LLKYKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAG 788

Query: 897 LKT-TYYLRSRSATSVEKSTLKGV 919
           LKT  YY + R AT+    +  G 
Sbjct: 789 LKTGMYYCKIRKATNTGIFSGDGE 812


>gi|86148041|ref|ZP_01066343.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
 gi|85834174|gb|EAQ52330.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp.
           MED222]
          Length = 693

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 178/714 (24%), Positives = 296/714 (41%), Gaps = 83/714 (11%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDL 278
            AR    +   +     +   +K  +   +  Y  +   +Y    +     +     F  
Sbjct: 19  AARQFFLQHVNQNTVFFHNLDEKIDYLLREGYYEAQVIEQYDRSFLHQIWANAYQAKFRF 78

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
                  K+     F    L+              +E  +    RV M   L      + 
Sbjct: 79  RTFLGAYKF-----FTSYALKT-------RDGKRYLERFED---RVVMTALLLARGDCEF 123

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A+     +    F  +TPT  NSG +   +L SCFL  + D++  I  A+  +  L++  
Sbjct: 124 ALALMEEIIHQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRG 183

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    T +R  GA I G   +S GV+P +K+  D+    NQ G R+GA   YL   H 
Sbjct: 184 GGVALLLTNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHP 243

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +FLD ++   D++ R   ++    IPD+ ++   QN    LFSP +V     +YG  
Sbjct: 244 DIMQFLDTKRENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDV---ERVYGVP 300

Query: 518 FEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F       +      + ++ + K+SA  L++ +  + FE+G+P+I F+D  N  +P Q  
Sbjct: 301 FSEISVTEKYHEMVDDPRIRKGKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ-- 358

Query: 577 GVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           G V+ SNLC+EI               S       CNLGSIN+         D  +L+ T
Sbjct: 359 GRVNMSNLCSEILQVNEASNYDDDLNYSHIGRDISCNLGSINIAKA-----LDGGRLSQT 413

Query: 625 IRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           + TA+R L+ V +++  +++   +K N    AIGLG M     L    I Y SPEA++  
Sbjct: 414 VDTAIRALNAVSEMSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFT 473

Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
                 + +H ++AS +LAQE+   +  F+ S +  G F    +      + ++  +  S
Sbjct: 474 SSYFACVLYHCLAASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFS 533

Query: 743 RLP--------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           RL         W ELK+ V + G+ N    AI PT +I+ I   + SI P    + ++  
Sbjct: 534 RLDIRIPTVSEWSELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKE 593

Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G       +L N                                  +    AF I P
Sbjct: 594 GKIGRVYFPAPYLNN-------------------------------SNLEYFRDAFSIGP 622

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +I+  +   + +DQ  SL L+ D+  + + ++     AW   +KT YY+R R
Sbjct: 623 KAIIDVYAAATEHVDQGLSLTLFFDDEVTTRDINKAQIYAWTKKIKTLYYIRMR 676


>gi|51597272|ref|YP_071463.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949726|ref|YP_001400044.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis IP 31758]
 gi|186896376|ref|YP_001873488.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590554|emb|CAH22195.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|152961221|gb|ABS48682.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|186699402|gb|ACC90031.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 716

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 171/738 (23%), Positives = 302/738 (40%), Gaps = 79/738 (10%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S+S+L+   + +   L + +     +  ++ AR    +   +     +   +K  +    
Sbjct: 12  SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKIDY---- 67

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
                     IEEG   + + +      +  L      ++     +LG    Y  Y L  
Sbjct: 68  ---------LIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKT 118

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +     VA+ LA   T  +  A E    + S  F  +TPT  N G +   
Sbjct: 119 FDGKRYLERYEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRG 175

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP
Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 235

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 295

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545
           D+  +    N    LFSP    D+  +YG        + + +      ++ + KI A   
Sbjct: 296 DITFELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--- 602
           ++ +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   ++  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRH 410

Query: 603 ----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
                S NL +       D      +I  A+R L  V ++ N  ++   +K N    AIG
Sbjct: 411 IGKDISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIG 470

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    + Y S EA++  +     +++HAI AS +LA ER   +  F  S +
Sbjct: 471 LGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDY 530

Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G F    I    + +         +  +   ++  W  L++ V   G+ N N  A+ P
Sbjct: 531 ASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPP 590

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++     G       ++ N+                  
Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                          + +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 679

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 680 KAQIYAWKKGIKTIYYIR 697


>gi|254555735|ref|YP_003062152.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum JDM1]
 gi|308179715|ref|YP_003923843.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|254044662|gb|ACT61455.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum JDM1]
 gi|308045206|gb|ADN97749.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 721

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 150/683 (21%), Positives = 270/683 (39%), Gaps = 84/683 (12%)

Query: 265 KARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321
              L   ++  +D  ++     Y R  DF F  ++     Y +Y L  +     + + F 
Sbjct: 63  HDYLETPAIDKYDFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFI 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
            RVAM         E  A++  + +    +  +TP+  N+G     +L SCFL    DD+
Sbjct: 122 DRVAMNALYFADGNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDM 181

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I   +     L++  GG+G + + +RG G  I   +G + GV+P +K+  D+    NQ
Sbjct: 182 NSIGRTINSALQLSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQ 241

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+R+GA   YL  +H D+  FL  +K   D++ R   ++    +PD F + +  +A   
Sbjct: 242 LGQRQGAGVVYLSVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMY 301

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHP 559
           LFSP     +   YG  F       E         + +  I A  L  ++  +  E+G+P
Sbjct: 302 LFSP---YGVEREYGVPFSYVDITKEYDNMVKNPNIRKTKIKARDLENEISKLQQESGYP 358

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEIT------------LNSSSEETAVCNLGSINL 607
           ++   D  N        G +  SNLC+E+                       CNLGS N+
Sbjct: 359 YVVNIDTANR--ENPIDGKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNI 416

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666
           +    +          ++   VR L  V D +    +   +K N     IGLG MG  + 
Sbjct: 417 VNLMTSP-----DFGHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAF 471

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--- 722
                + Y S EAV+  +     +++  + AS E+A+E    + +F+ S +  G +    
Sbjct: 472 FAKNQMEYGSKEAVDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKY 531

Query: 723 --IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              D      +       +   ++  W+ LK+ V   G+ + N MA+AP  +I+ I   +
Sbjct: 532 TTQDWQPKYDKTTALFDGIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTT 591

Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            S+ P    +  +     G       +L N+                             
Sbjct: 592 ASLHPIINRVEERQEKKIGKIYYPAPYLSNDTI--------------------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----------------SG 882
                 + +A++ D   +I+  +  Q+ +DQ  SL L++                   + 
Sbjct: 625 ----NYYKSAYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTT 680

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905
           + L+ +   A+  G+K+ YY+R+
Sbjct: 681 RDLNILRNYAYRKGIKSIYYIRT 703


>gi|289705576|ref|ZP_06501968.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus
           luteus SK58]
 gi|289557805|gb|EFD51104.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus
           luteus SK58]
          Length = 725

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 168/671 (25%), Positives = 271/671 (40%), Gaps = 77/671 (11%)

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH-INGSRI-EMPQAF 320
                E+   +   ++           F    +LG    Y  Y L   +G R  E  +  
Sbjct: 81  DYYETETFEQYPFEFIRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDR 140

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379
              VA+ LA  + E     V   + + +  F  +TPT  NSG +   +L SCFL  + D+
Sbjct: 141 VAVVALHLARGDQELATHLV---DEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDN 197

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R  GA I     +S GVIP +K+  D+    N
Sbjct: 198 MESIARGINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYAN 257

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N   
Sbjct: 258 QLGARQGAGAVYLNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDM 317

Query: 500 TLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            LFSP    D+  +YG  F      E Y    D   IK  + I+A   ++ +  + FE+G
Sbjct: 318 YLFSP---YDVERVYGVPFSEISVTEKYYEMVDDARIKKTK-INAREFFQTIAEIQFESG 373

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSI 605
           +P++ F+D  N  +P    G +  SNLC+EI               +   +   CNLGS+
Sbjct: 374 YPYVVFEDTVNAANPI--KGRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSM 431

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           N+         D      ++ TA+R L  V  + +  ++    K N    AIGLG M   
Sbjct: 432 NIAKT-----MDSPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLH 486

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI 723
             L    + Y S E ++  +     + FHA+ AS  +A E    +  F+ S +  G F  
Sbjct: 487 GYLARERVHYGSEEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFD 546

Query: 724 DSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                              E  +   ++  W ELK  V   G+ N N  A+ PT +I+ I
Sbjct: 547 KYTDQEWAPATERVAGLFAEAGIALPTQDDWRELKASVMEHGIFNRNLQAVPPTGSISYI 606

Query: 776 CGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
              + SI P    + ++     G       +L N                          
Sbjct: 607 NNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTN-------------------------- 640

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
                +  + +  A+EI    +I++ +   + +DQ  SL L+  +  + + L+     AW
Sbjct: 641 -----ENLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAW 695

Query: 894 LMGLKTTYYLR 904
             G+KT YY+R
Sbjct: 696 TKGIKTIYYIR 706


>gi|215432003|ref|ZP_03429922.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
 gi|289755167|ref|ZP_06514545.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
 gi|289695754|gb|EFD63183.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis EAS054]
          Length = 693

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 167/680 (24%), Positives = 279/680 (41%), Gaps = 72/680 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +    + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTAPTRD 654

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 655 VNQAQDYAWRKGIKTLYYIR 674


>gi|28377562|ref|NP_784454.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           plantarum WCFS1]
 gi|28270394|emb|CAD63297.1| ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           plantarum WCFS1]
          Length = 721

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 150/683 (21%), Positives = 270/683 (39%), Gaps = 84/683 (12%)

Query: 265 KARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321
              L   ++  +D  ++     Y R  DF F  ++     Y +Y L  +     + + F 
Sbjct: 63  HDYLETPAIDKYDFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFI 121

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
            RVAM         E  A++  + +    +  +TP+  N+G     +L SCFL    DD+
Sbjct: 122 DRVAMNALYFADGNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDM 181

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I   +     L++  GG+G + + +RG G  I   +G + GV+P +K+  D+    NQ
Sbjct: 182 NSIGRTINSALQLSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQ 241

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+R+GA   YL  +H D+  FL  +K   D++ R   ++    +PD F + +  +A   
Sbjct: 242 LGQRQGAGVVYLSVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMY 301

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHP 559
           LFSP     +   YG  F       E         + +  I A  L  ++  +  E+G+P
Sbjct: 302 LFSP---YGVEREYGVPFSYVDITKEYDNMVKNPNIRKTKIKARDLENEISKLQQESGYP 358

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEIT------------LNSSSEETAVCNLGSINL 607
           ++   D  N        G +  SNLC+E+                       CNLGS N+
Sbjct: 359 YVVNIDTANR--ENPIDGKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNI 416

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666
           +    +          ++   VR L  V D +    +   +K N     IGLG MG  + 
Sbjct: 417 VNLMTSP-----DFGHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAF 471

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--- 722
                + Y S EAV+  +     +++  + AS E+A+E    + +F+ S +  G +    
Sbjct: 472 FAKNQMEYGSKEAVDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKY 531

Query: 723 --IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              D      +       +   ++  W+ LK+ V   G+ + N MA+AP  +I+ I   +
Sbjct: 532 TTQDWQPKYDKTAALFDGIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTT 591

Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            S+ P    +  +     G       +L N+                             
Sbjct: 592 ASLHPIINRVEERQEKKIGKIYYPAPYLSNDTI--------------------------- 624

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----------------SG 882
                 + +A++ D   +I+  +  Q+ +DQ  SL L++                   + 
Sbjct: 625 ----NYYKSAYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTT 680

Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905
           + L+ +   A+  G+K+ YY+R+
Sbjct: 681 RDLNILRNYAYRKGIKSIYYIRT 703


>gi|126650013|ref|ZP_01722246.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126593185|gb|EAZ87147.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 697

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 167/693 (24%), Positives = 299/693 (43%), Gaps = 71/693 (10%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQI- 300
             +  ++  Y       I   V      +  +D +++ ++    K   D+ F +      
Sbjct: 35  LEYVNVRLRYFIDIEEKIRYLVDEGYYEKDFIDMYEMDFIKMLYKKAYDYNFRFPSFMSA 94

Query: 301 --LYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              YD Y +        +E  +   + +A+ LA   T   KR+VE         +  +TP
Sbjct: 95  SKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTVLAKRSVE----AMMEAYQPATP 150

Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  NSG +   +L SCF  ++ D +  I   +     L++  GG+G + T +R LG  I 
Sbjct: 151 TALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIK 210

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               ++ GVIP  K+  ++    NQ G+R G+   YL  +H D+E F+  +K   DD+ R
Sbjct: 211 EILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIR 270

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533
              ++T   IP +F   + ++    LFSP    D+  +YGK        E Y    D  +
Sbjct: 271 LATLSTGIIIPSIFFDLMKRDKDIVLFSP---YDIFKVYGKRMSEISISEMYYELLDNPK 327

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE------ 587
           I+  ++++A  L+ ++    FE+G+P+  F D  N   P +++G V  SNLCTE      
Sbjct: 328 IRKIKRLNARRLYTEVKKAQFESGYPFEIFDDNVNEVHPLKNIGRVKMSNLCTEILQVQE 387

Query: 588 ------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
                     +       CNLGSI++ A       D++ L  T    +  +  +  I   
Sbjct: 388 TSVITDQDQPNEYGLDVSCNLGSIDIHAASKV--NDFETLIDTAMHLLTNVSQMTYIKN- 444

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +    K+N    ++GLG M     L    I Y S ++++  D  ME ++++++ +S+E+
Sbjct: 445 -VPSVAKANRLMHSVGLGCMNLHGHLVTEGIMYGSKDSIDFMDRFMEAMNYYSLKSSMEM 503

Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVK 754
           A+E+   +  F+ S +  G +    +    E            +   +   W+ LK+ V 
Sbjct: 504 AKEKAETFYRFEDSDYASGSYFDQYVNKNEEELSSAVLKALGNIPIITNKMWELLKEDVM 563

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ +S  +AIAPT +I+ I   + SI P  + + V+             L N      
Sbjct: 564 EYGLFHSYRLAIAPTGSISYIRSCTASISPCTERVEVRDYADSRTIYPMPHLTN------ 617

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                                    +   ++  A+++DP  LI+  +  QK +DQ  S+ 
Sbjct: 618 -------------------------ENSHLYVEAYDVDPYDLIDLYAASQKHVDQGISMT 652

Query: 875 LYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           LY+ +  + ++L  +Y  AW+ G+K+ YY+R R
Sbjct: 653 LYVTDNWTTEQLAKVYIYAWVKGIKSVYYVRQR 685


>gi|310288087|ref|YP_003939346.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           bifidum S17]
 gi|309252024|gb|ADO53772.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           bifidum S17]
          Length = 731

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E      L       +    
Sbjct: 50  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDDFYAHAESSGF 109

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
               +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + S  
Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGSEQRAVEYLDEMLSGA 168

Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N G     +  SCFL  + D +  I   +     L+K  GG+    + +R 
Sbjct: 169 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 228

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++  
Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   +     IPD+  +   + A   LFSP    D   +YGK F           
Sbjct: 289 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 345

Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
              + ++ +  I A   +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI
Sbjct: 346 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403

Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                          S       CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +   +++N    AIGLG M     L    I Y S EA++  D     +++HA 
Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740
            AS  LA E G  +  F  S + +     +      + R              +   +  
Sbjct: 518 RASHALAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799
            +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++     G  
Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
               +++ N                               +  + +  A+EI    ++++
Sbjct: 638 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   + +DQ  SL L+  +  + + L+     AW  G+KT YY+R
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712


>gi|115379423|ref|ZP_01466524.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310822416|ref|YP_003954774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363562|gb|EAU62696.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309395488|gb|ADO72947.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Stigmatella aurantiaca DW4/3-1]
          Length = 926

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 133/660 (20%), Positives = 232/660 (35%), Gaps = 69/660 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G   +E ++E    E  +LL       ++P  FN      PQ S+CF+ +V D +  I  
Sbjct: 118 GYFAREQDRETFQAELTHLLLRQKAAFNSPVWFNVGVEEQPQCSACFINSVEDSMESILT 177

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
             +  AML KY  G G++ +P+R    H+ G  G + G + F+K  +  A  V  GGK R
Sbjct: 178 LAKTEAMLFKYGSGTGSNLSPLRSSREHLTG-GGTASGPVSFMKGFDAFAGVVKSGGKTR 236

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L   H D+ +F+  + N                            + N +  +
Sbjct: 237 RAAKMVILNASHPDILDFIRCKTNEEKKAWALIEAGYDASFNGDAYGSVFFQNSNNSVRV 296

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V  +  WT  +  +   +                               A  L
Sbjct: 297 TDEFMRAVVNDGTWTTRAVRDGQAME---------------------------THMAREL 329

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +R++       G P + F    N      +   +++SN C+E        + + CNL S+
Sbjct: 330 FREISEAAHLCGDPGLQFDTTVNAWHTCANTARINASNPCSEYMF----LDDSACNLASL 385

Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+     +  FD       +   +  ++ ++  + +  EK  +++H +R +GLG     
Sbjct: 386 NLMHFRTIDGCFDPVAFKHAVDVVLLAMEIIVGFSRYPTEKITRNSHDYRPLGLGYANLG 445

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L    +PY SPE    A      +   A +AS  LA+  G ++ +  +          
Sbjct: 446 ALLMACGLPYDSPEGRNYAGAITSLMCGQAYAASARLAERMGPFAGYAQNAEPMLGVIRK 505

Query: 725 SI---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780
                  LA       ++   +  WDE        G RNS    +APT TI  +    + 
Sbjct: 506 HRKAGHQLAPEGVNPDLHAAQKAAWDEALALGTEHGFRNSQVTVLAPTGTIGFMMDCDTT 565

Query: 781 SIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERI 837
            I+P    + Y K    G   +VN  +   L++           + Y   + +I     +
Sbjct: 566 GIEPDIALIKYKKLVGGGMLKIVNQTVPQALERLGYRQSQAQEIISYLDKNETIEGAPHL 625

Query: 838 PDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
             +   +   AF        I  M  I+     Q ++  A S  + +    + + ++  Y
Sbjct: 626 KPEHLPVFDCAFKPARGKRSIQWMGHIQMMEACQPFLSGAISKTVNMPSNATVEDIEKAY 685

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            +AW  GLK     R     +   +T K       A                       E
Sbjct: 686 LEAWKRGLKAIAVYRDGCKRTQPLNTSKEQVKDTKAPAAVALEPQAKPEPKAMRKRLPDE 745


>gi|312173338|emb|CBX81593.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora
           ATCC BAA-2158]
          Length = 716

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 170/726 (23%), Positives = 293/726 (40%), Gaps = 78/726 (10%)

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY-IEEGVKARLLHESMM--- 274
             A    +      +  +Y         + Q    +YF ++ I   V+   + E +    
Sbjct: 10  EAAEATADYHALNAMLNLYDDNGHIQFEKDQDATRQYFIQHVIPNSVQFNSIAERLQFLV 69

Query: 275 ---DFDLVYLANDL-----------KYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319
               ++   L                  R     +LG    Y  Y L   +G R    ++
Sbjct: 70  AEGYYEAEVLNAYPFEFVCSLFARATARRFRFQTFLGAWKFYTSYTLKTFDGKRY--LES 127

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPD 378
           F  RV M         +  A+   + + S  F  +TPT  N G +   +L SCFL  + D
Sbjct: 128 FTERVCMVALTLAKGDQPLALALADEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIED 187

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           ++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     
Sbjct: 188 NMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYA 247

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N  
Sbjct: 248 NQLGARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQQ 307

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETG 557
             LFSP +V  ++ L    F     + +      + ++ R  I+    ++ +  + FE+G
Sbjct: 308 MALFSPYDVELIYAL---PFADISISEKYHEMLADTRIRRTFINPREFFQTLAEIQFESG 364

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAH 610
           +P+I F+D  N  +P    G ++ SNLC+EI   ++  E         +    S NL + 
Sbjct: 365 YPYIMFEDTVNRANPVH--GRINMSNLCSEILQVNTPTEYNDDLSYRHIGKDISCNLGSL 422

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +  D    A T+  AVR L  V D  + H++   ++ N    AIGLG M     L  
Sbjct: 423 NIAHAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAR 482

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y S   ++  +     +++HA+  S +LA+ER   +S F  S +  G +    +G 
Sbjct: 483 EGIEYGSEAGLDFTNIYFYTVTYHALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQ 542

Query: 729 LAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
             + R         +  +   ++  W  LK+ V   G+ N N  AI PT +I+ I   + 
Sbjct: 543 RWQPRTAQVAALFAKAGIEIPTQQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATS 602

Query: 781 SIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + ++    +G       F+ N+                              
Sbjct: 603 SIHPIVSRIEIRKEGKTGRVYYPAPFMNND------------------------------ 632

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
             +  +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+K
Sbjct: 633 -NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIK 691

Query: 899 TTYYLR 904
           T YY+R
Sbjct: 692 TLYYIR 697


>gi|323359289|ref|YP_004225685.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum
           StLB037]
 gi|323275660|dbj|BAJ75805.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum
           StLB037]
          Length = 718

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 164/673 (24%), Positives = 278/673 (41%), Gaps = 60/673 (8%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +E+      + E      +  L +     +     +LG    Y  Y L   +G
Sbjct: 66  KERLDYLVEKEYYEPTVLEKYSMEFIQELNDRAYGAKFRFETFLGAFKYYTSYTLKTFDG 125

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +    RV M         ++ AV+  + + S  F  +TPT  N+G     +L 
Sbjct: 126 KRYLERFED---RVVMTALALADGDQRLAVQLVDEIISGRFQPATPTFLNAGKAQRGELV 182

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S G+IP +K
Sbjct: 183 SCFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREAGAPIKQIENQSSGIIPVMK 242

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 243 LLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVT 302

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +         LFSP    D+  +YGK F       + +    + ++ +  I+A   ++ 
Sbjct: 303 FELAKNGEDMYLFSP---YDVEKVYGKPFGDISVTEKYREMVDDPRIKKTKINAREFFQT 359

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNL--- 602
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI      ++  E    +    
Sbjct: 360 LAEIQFESGYPYIMFEDTVNKANPI--AGRINMSNLCSEILQVNTPTTYNEDLSYDTIGK 417

Query: 603 -GSINLLAHFANNQFDYDKLASTIRTAVRVLDN-VIDINCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       D   L  T+ TA+R L    +  +  ++   +  N    AIGLG 
Sbjct: 418 DISCNLGSMNIALAMDGGDLGLTVETAIRALTAVSVQSHIASVRSIEDGNDRSHAIGLGQ 477

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L   H+ Y S E ++  +     + FHA+ AS  LA ERG  +  F+ S +  G
Sbjct: 478 MNLHGYLAREHVYYGSEEGIDFTNIYFYTVLFHALRASNRLAIERGTAFDGFENSTYASG 537

Query: 720 VFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            F       + E +          +   ++  W ELK  V+  G+ N N  A+ PT +I+
Sbjct: 538 EFFDKYTDQVWEPQTAKAKELFAGVQIPTQDDWRELKASVQAHGIYNQNLQAVPPTGSIS 597

Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++     G       F+ N                        
Sbjct: 598 YINNSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTN------------------------ 633

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  +  + +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     
Sbjct: 634 -------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKAQIY 686

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 687 AWRKGIKTIYYIR 699


>gi|310764902|gb|ADP09852.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia sp.
           Ejp617]
          Length = 716

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 163/638 (25%), Positives = 269/638 (42%), Gaps = 60/638 (9%)

Query: 289 RDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           R     +LG    Y  Y L   +G R    + F  RV M         +  A+   + + 
Sbjct: 98  RFRFQTFLGAWKFYTSYTLKTFDGKRY--LEGFTERVCMVALTLAKGDQPLALALMDEIL 155

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + 
Sbjct: 156 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 215

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD +
Sbjct: 216 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDTK 275

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   ++    IPD+  +    N    LFSP +V  ++ L    F     + +
Sbjct: 276 RENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYAL---PFADVSISEK 332

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                 + ++ R  I+    ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC
Sbjct: 333 YPEMLDDTRIRRTFINPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 390

Query: 586 TEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI   +S  E              S NL +    +  D    A T+  AVR L  V D 
Sbjct: 391 SEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNIAHAMDSADFARTVEIAVRGLTAVSDQ 450

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            + H++   ++ N    AIGLG M     L    I Y S   ++  +     +++HA+  
Sbjct: 451 SHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVTYHALRT 510

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDE 748
           S +LA+ER   +S F  S +  G +    +G     R            +   S+  W  
Sbjct: 511 SNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPSQQQWQA 570

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           LK+ V   G+ N N  AI PT +I+ I   + SI P    + ++    +G       F+ 
Sbjct: 571 LKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMN 630

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                + ++  A++I P  +I++ +   + +
Sbjct: 631 ND-------------------------------NQALYRDAYDIGPEAIIDTYAEATRHV 659

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 660 DQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIR 697


>gi|187919646|ref|YP_001888677.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phytofirmans PsJN]
 gi|187718084|gb|ACD19307.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia phytofirmans PsJN]
          Length = 861

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 146/632 (23%), Positives = 257/632 (40%), Gaps = 80/632 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              L +L ++Y         +     F RVA G+A  E +  + +VE  F + L      
Sbjct: 29  QFSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPQALRESVEALFVDNLRHGALG 84

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 85  AGRIMSAAGTGIAATLINCFVQPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNF 144

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +H T+  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 145 SAIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 204

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM+ V ++  W L    E S               +
Sbjct: 205 AKHSKG----RWNNFNVSVGVTDEFMRAVEEDQPWQLVHRAEPSPA---------QRAAD 251

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             RQ + G + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N 
Sbjct: 252 DVRQREDG-LWVYSERPARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 310

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL                 FD+D LA   RT VR LDNV
Sbjct: 311 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQMKGRKPSFDWDGLAKRTRTQVRFLDNV 366

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    +++    +   R IG+G  G    L +L + Y S E  + A    + +   A 
Sbjct: 367 LDVTLWPLQQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIAQLMRDEAY 426

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA+  F    +                   L     +    +++K+ ++ 
Sbjct: 427 RASVELARERGAFPLFDAGRY-------------------LEAGTFASRLPEDIKEAIRR 467

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y +             ++ +  + 
Sbjct: 468 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGGRE 516

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E     L    G         + L     +A E+     ++  +  Q ++D + S 
Sbjct: 517 SFDVEDYAYRLYRELG------GDTNKLPDYFVSALEMSARDHLDMMAAVQPYVDTSISK 570

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + +  +   +  + +Y  AW  GLK     R
Sbjct: 571 TVNVPADYPFEAFESLYFDAWKNGLKGLATYR 602


>gi|86140896|ref|ZP_01059455.1| ribonucleoside-diphosphate reductase, alpha subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832838|gb|EAQ51287.1| ribonucleoside-diphosphate reductase, alpha subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 600

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 151/603 (25%), Positives = 245/603 (40%), Gaps = 118/603 (19%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
            + +FY  +   +F  ++P   N G +     SCF + + DD+  I     E  M++K  
Sbjct: 87  FSDKFYKYMGEGYFSLASPVWSNFGKKRGLPISCFGSHIDDDMGNILYTQSEVGMMSKLG 146

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG    +  +R  GA +   NG + G +  +++ +     V+QG  R+G    YL   H 
Sbjct: 147 GGTSGYFGKIRHRGAAVKN-NGYASGAVHIMQLFDKMVDVVSQGSVRRGRFSPYLPISHP 205

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D++EFL++      +      +     +   +M+ +                        
Sbjct: 206 DIKEFLEIGT----EGNSIQQLTHGVTVDSTWMQEMIDGDT------------------- 242

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV- 576
                                      +W K+L    E G+P+I + D  N   P  +  
Sbjct: 243 -----------------------DKREVWAKVLQRRGEMGYPYIFYTDNANNGKPDVYKD 279

Query: 577 --GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               +++SNLCTEI L SS E + VC L SIN+L       +D  K    + T V  LD 
Sbjct: 280 KGHDIYASNLCTEIMLPSSDEWSFVCVLSSINVL------HYDKWKNTDAVETMVCFLDA 333

Query: 635 V------------------IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           V                         +E+A     ++RA+GLG++G+ S L      + S
Sbjct: 334 VLTEFIDKLEEYRDSDNRDHRQTFMFMERAYNFAKSNRALGLGVLGWHSLLQSKRHAFDS 393

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736
            EA ++  E    I   +  AS ELA++ G   + KG                       
Sbjct: 394 QEAYDLNSEIFREIKQRSYKASEELAEKFGEPETLKG----------------------- 430

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795
                               G RN+   AIAPT + A I G VSQ I+P + N+YVK   
Sbjct: 431 -------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNVYVKDIA 471

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
               T+ N FL    +++ +    +   ++ +DGS+ ++E + +  K +  T  EID M 
Sbjct: 472 KIKTTIKNPFLEELFEEKGMNTPEVWRSVRDNDGSVQHLEFLTEQEKDVFKTYAEIDQMA 531

Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           +I  A+ RQ  IDQ QS+NL +  +   K+++ I+  AW +GLK+ YY  S +A    K 
Sbjct: 532 IIYQAANRQNHIDQGQSINLLVHPDMPIKEINKIHITAWKLGLKSLYYQHSMNAAQKFKQ 591

Query: 915 TLK 917
             +
Sbjct: 592 KKE 594


>gi|326800311|ref|YP_004318130.1| ribonucleoside-diphosphate reductase, subunit alpha
           [Sphingobacterium sp. 21]
 gi|326551075|gb|ADZ79460.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sphingobacterium sp. 21]
          Length = 705

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 171/709 (24%), Positives = 300/709 (42%), Gaps = 61/709 (8%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
            +L ++       +     +     ++       I+  ++ +        +    +    
Sbjct: 30  FRLYKD---KEAVRSYFLDYVNKNTVFFYTLKEKIDYLIENKYYINFYAHYSFEQMKEVY 86

Query: 286 KYERDFAFEYLGLQI---LYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
            +     F +         +  Y L  +     +E  +   + V++ LA  +  +   A+
Sbjct: 87  DFVYAKKFRFPSFMSAFKFFQSYALRDDSGEKFLERYEDRVVCVSLYLASGDLNR---AL 143

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
           E+  +L +  +  +TPT  N+G     +L SCFL  + D L GI  A+ E   L+   GG
Sbjct: 144 EYAEILINQEYQPATPTFLNAGKLRSGELVSCFLDEIGDSLSGISYAIDEAMKLSSIGGG 203

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +  + + VR  G  I G  G+S GV+P +K+  DT    NQ G+R GA   YL  +H D+
Sbjct: 204 VSFNISKVRARGEAIKGVEGRSSGVLPVMKIMEDTFSYANQLGQRPGAGAVYLNVFHSDI 263

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EEFLD +K   D++ R   ++    IPD FM+    +    LF P  V   +  Y  E +
Sbjct: 264 EEFLDCKKINVDEKSRIKSLSIGVIIPDKFMQIAEHDEVCYLFYPHTVYQEYGQYLDEMD 323

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              + Y+      ++K  RKI+A  L  K+     E+G+P++ FKD  N       +G V
Sbjct: 324 -MTKMYDELVSNPKVKK-RKINARHLLIKVAQTQKESGYPYLFFKDNANRGHALNGIGSV 381

Query: 580 HSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
             SNLCTEI         N   EE  +    S NL +       +  ++   ++TA+R L
Sbjct: 382 KFSNLCTEIMQLSEVSDINPYHEEDTIRYGISCNLGSLNIATTMENRRIKEVVKTAMRSL 441

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+ +   +   +K+N    ++GLG M     L    I Y S EA++  +     ++
Sbjct: 442 TVVSDMTDIKMVPTIQKANRELHSVGLGAMNLHGFLAKNFITYESKEALDFCNVFFMMVN 501

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           F+++  S+E+A+ERG  +  F+ S +  G +       D   +   V++    +    R 
Sbjct: 502 FYSLECSMEIAKERGVTFKGFENSDYANGAYFDKYINNDYFPVSDRVKELFEGITIPDRA 561

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W++LK+ V   G+ ++  MAIAP  + + I   + S+ P    + V+            
Sbjct: 562 AWEKLKQDVMQHGVYHAYRMAIAPNQSTSYIMNATASVMPVVDTIEVREYGDSTTYYPMP 621

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L N+                                   + +A+++D   ++   S  Q
Sbjct: 622 YLNND-------------------------------NYFYYKSAYDMDQNNVLRLISVIQ 650

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           + +DQ  S  L+ +   + + L   Y  A  MGLK+ YY R+R A+  E
Sbjct: 651 RHVDQGISTILHTNSKDTTRDLAKYYIYAHKMGLKSLYYTRTRKASIDE 699


>gi|146312796|ref|YP_001177870.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter
           sp. 638]
 gi|145319672|gb|ABP61819.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Enterobacter sp. 638]
          Length = 705

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 174/697 (24%), Positives = 288/697 (41%), Gaps = 63/697 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E +   +    +                  E   + R+L      F L            
Sbjct: 30  EAVDAFFAAHVRPNSVPFASQDARLDYLVSEGYYEERVLTRYDRPFVLNLFERA-HASGF 88

Query: 291 FAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               +LG    Y  Y L   +G R  E  +     VA+ LA  +   E  A +  + + S
Sbjct: 89  RFQTFLGAWKYYTSYTLKTFDGKRYLESFEDRVCMVALTLAQGD---ENLAEQLMDEMLS 145

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N G     +L SCFL  + D++  I  A+     L+K  GG+    + +
Sbjct: 146 ARFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 206 RESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +NA   LFSP    D+  +YGK F     +   
Sbjct: 266 ENADEKIRIKTLSLGVVIPDITFQLAKENAEMALFSP---YDIERIYGKPFGDVTISELY 322

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                + +V +K I+A   ++ +  + FE+G+P+I ++D  N  +P    G ++ SNLC+
Sbjct: 323 DELVADDRVRKKFINARDFFQTLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCS 380

Query: 587 EITLNSSSEETAVCN-------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI   +S+                S NL +    +  D      T+ TA+R L  V D+ 
Sbjct: 381 EILQVNSASTYDENLDYAHTGKDISCNLGSLNIAHTMDSPDFGRTVETAIRGLTAVSDMS 440

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++   +  N    AIGLG M     L    I Y SPE ++  +     I++HA++ S
Sbjct: 441 HIRSVPSIETGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALNTS 500

Query: 699 VELAQE-RGAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA---MNRTSRLPWDEL 749
           + LA+E    ++ F+ S +  G +              +VR   A   +   +R  W +L
Sbjct: 501 MMLARERNQRFAGFEKSRYASGEYFNQYLENSWQPKTEKVRALFARAGVTLPTREMWQQL 560

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V T G+ N N  A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 561 RDDVMTFGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTN 620

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                          +   ++  A+EI P  +I++ +   K +D
Sbjct: 621 -------------------------------ENLALYQDAYEIGPEKIIDTYAEATKHVD 649

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 650 QGLSLTLFFPDTATTRDINKAQIHAWKKGIKTLYYIR 686


>gi|288933943|ref|YP_003438002.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella
           variicola At-22]
 gi|288888672|gb|ADC56990.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           variicola At-22]
          Length = 713

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 183/740 (24%), Positives = 305/740 (41%), Gaps = 83/740 (11%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +  ++   I    ++  + A   L     E      K  Q         + P       +
Sbjct: 1   MATTTAERITAAADFHALNAMLNLYD--SEGRIPFEKDRQAVEVFMTAQIQPNTLSFVSQ 58

Query: 262 EGVKARLLHESMMD------FDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH--IN 310
           E     L+ E   D      +D  ++     + R  AF    +LG    Y  Y L     
Sbjct: 59  EDKLTWLVREGYYDPQVLAGYDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALKTFDG 118

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
              +E      + VA+ LA  + ++ ++ +E    + S  F  +TPT  N+G +   +L 
Sbjct: 119 KHYLEDFADRCVMVALTLAQGDDQQARQLME---EMLSGRFQPATPTFLNAGKQQRGELI 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV+P +K
Sbjct: 176 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+ 
Sbjct: 236 MLEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRK 548
            +   ++A   LFSP    D+  LYGK F   A  +   Q    E    R I A  L+++
Sbjct: 296 FQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQR 352

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   E
Sbjct: 353 LAEIQFESGYPYIMFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGE 410

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI TAVR L  V D+ +  ++      N    A
Sbjct: 411 DISCNLGSLNIAHT-----MDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHA 465

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPE ++  +     +++HA+  S+ LA+ER   ++ F+ S
Sbjct: 466 IGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQS 525

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    +    + + E          +    R  W +L+  +   G+ N    A+
Sbjct: 526 RYASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDIMRYGIYNRYLQAV 585

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N+                
Sbjct: 586 PPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNND---------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                             ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 ---------------NLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 674

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 675 INKAQIYAWKKGIKTLYYIR 694


>gi|261225972|ref|ZP_05940253.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256770|ref|ZP_05949303.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia
           coli O157:H7 str. FRIK966]
          Length = 713

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 173/707 (24%), Positives = 291/707 (41%), Gaps = 63/707 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S     +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSVA-TPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 203

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 204 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 263

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 264 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 320

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 321 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 378

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 379 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 438

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 439 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 498

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +    +    + +     EL       
Sbjct: 499 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGIT 558

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 559 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 618

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 619 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 647

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 648 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 694


>gi|123441278|ref|YP_001005265.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088239|emb|CAL11028.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 693

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 170/708 (24%), Positives = 288/708 (40%), Gaps = 66/708 (9%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R   +K R+       +   + T         E     +EEG   + + E      +  
Sbjct: 9   GRIQFDKDRQAARQYFLQHVNQNTVFFHNL--QEKLNYLVEEGYYEKDVLEKYDFSFIKS 66

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338
           L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA      ++ 
Sbjct: 67  LFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG---NQQV 123

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +    + +  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 124 ARDLVEEIITGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAINSALQLSKRG 183

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 184 GGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLHAHHP 243

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYG 515
           D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++   L  
Sbjct: 244 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVEQVYGVPLSE 303

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                 Y          + K    I A   ++ +  + FE+G+P++ F+D  N  +P   
Sbjct: 304 ISVSEKYREMVDNKRIRKSK----IKAREFFQILAEIQFESGYPYMMFEDTVNRANPI-- 357

Query: 576 VGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            G ++ SNLC+EI   +S  E         +    S NL +    +  D      +I TA
Sbjct: 358 KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAHIMDSPDFGKSIETA 417

Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +R L  V D+ N  ++   +K N    AIGLG M     L    I Y S EA++  +   
Sbjct: 418 IRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTNIYF 477

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAM 738
             +++HAI AS +LA ER   +  F  S +  G +    I    + +         +  +
Sbjct: 478 YTVAYHAIRASNQLAIERGSHFKGFDQSTYASGHYFTKYIEQSWQPKTAKVSALFAQAGI 537

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797
           +   +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G
Sbjct: 538 SVPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEGKIG 597

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                  ++ N+                                 + +  A++I P  +I
Sbjct: 598 RVYYPAPYMTND-------------------------------NLEYYQDAYQIGPEKII 626

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 627 DTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674


>gi|301633424|gb|ADK86978.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           pneumoniae FH]
          Length = 721

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 171/742 (23%), Positives = 306/742 (41%), Gaps = 83/742 (11%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           ++ DLE+ +  ++         Y KV   F ++    E     + KP+    H  +    
Sbjct: 12  TQEDLESYISLNA---------YTKVYGDFKMDLHAVEAYIQEHVKPKTKVFHSTKER-- 60

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
                 ++       +           +       R     ++G    Y+ Y L   +G 
Sbjct: 61  --LDFLVKNDYYDENIINMYSFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGK 118

Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370
             +E  +    RV M +         +A++    + +  F  +TPT  N+   +  +  S
Sbjct: 119 WYLENYED---RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVS 175

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           C+L  + D++  I  A+     L+K  GG+    T +R  GA I     +S  +IP +K+
Sbjct: 176 CYLLRIEDNMESIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSDIIPIMKL 235

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G+R+GA   YL   H DV +FLD ++   D++ R   ++    IPD+  
Sbjct: 236 LEDSFSYANQLGQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITF 295

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                N    LFSP +V + +     +  +    YE  A++   K F  I+A   ++ + 
Sbjct: 296 TLAKNNEEMALFSPYDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVA 353

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------- 599
            + FE+G+P+I F D  N R    H   +  SNLC+EI   S+  E              
Sbjct: 354 ELHFESGYPYILFDDTVNRR--NAHPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDI 411

Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIG 657
            CNLGS+N+     +      + +  ++ A+  LD V  ++        +K N  + A+G
Sbjct: 412 SCNLGSLNIAKAMESGP----EFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALG 467

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L    I Y SPEA++  +     +++HA  AS ELA E+G + +F+ + + 
Sbjct: 468 LGAMNLHGFLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFA 527

Query: 718 QGVFPIDSIGLLAEV-----------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G +    I +  +              +  +   +R  W EL   ++  G+ NS+ +AI
Sbjct: 528 DGSYFDKYIKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAI 587

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + V+         V ++                     
Sbjct: 588 APTGSISYLSSCTPSLQPVVSPVEVRKEGRLGRIYVPAY--------------------- 626

Query: 827 HDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                    ++  D    +   A+E+ P  +I  A+  Q+ +DQA SL L++ +  + + 
Sbjct: 627 ---------QLNKDSYPFYKDGAYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRD 677

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           L+  Y  A+  G  + YY+R R
Sbjct: 678 LNKAYIYAFKKGCSSIYYVRVR 699


>gi|324014405|gb|EGB83624.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli MS 60-1]
          Length = 626

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 169/633 (26%), Positives = 273/633 (43%), Gaps = 60/633 (9%)

Query: 294 EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
            +LG    Y  Y L   +G R    + F  RV M         E  A +  + + S  F 
Sbjct: 13  TFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQ 70

Query: 353 CSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
            +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + +R  G
Sbjct: 71  PATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG 130

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D
Sbjct: 131 APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENAD 190

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQAD 530
           ++ R   ++    IPD+      +NA   LFSP    D+  +YGK F   A      +  
Sbjct: 191 EKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISERYDELV 247

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             E    + ++A   ++++  + FE+G+P+I ++D  N  +P    G ++ SNLC+EI  
Sbjct: 248 ADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQ 305

Query: 591 NSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHT 642
            +S+ E           +  S NL +    +  D    A T+ TAVR L  V D+ + H+
Sbjct: 306 VNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHS 365

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   +  N    AIGLG M     L    I Y SPEA++  +     I++HA+  S+ LA
Sbjct: 366 VPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLA 425

Query: 703 QER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRV 753
           +ER   ++ FK S +  G +                 EL         +R  W +L+  V
Sbjct: 426 RERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDV 485

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812
              G+ N N  A+ PT +I+ I   + SI P    + ++    +G       F+ N    
Sbjct: 486 MRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN---- 541

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                                      +   ++  A+EI    +I++ +   + +DQ  S
Sbjct: 542 ---------------------------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLS 574

Query: 873 LNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           L L+  +  + + ++     AW  G+KT YY+R
Sbjct: 575 LTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 607


>gi|313140806|ref|ZP_07802999.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133316|gb|EFR50933.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171]
          Length = 731

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +     Y     AT+ +      E     I+    A  + E      L       +    
Sbjct: 50  KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDGFYAHAESSGF 109

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
               +LG    Y  Y L     ++ + + F  R A          E+RAVE+ + + S  
Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEMLSGA 168

Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  +TPT  N G     +  SCFL  + D +  I   +     L+K  GG+    + +R 
Sbjct: 169 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 228

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           LGA I     +S GVIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++  
Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   +     IPD+  +   + A   LFSP    D   +YGK F           
Sbjct: 289 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 345

Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
              + ++ +  I A   +  +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI
Sbjct: 346 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403

Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                          S       CNLGS+N+             LA T+ TA+R L +V 
Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 457

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +      +   +++N    AIGLG M     L    I Y S EA++  D     +++HA 
Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740
            AS  LA E G  +  F  S + +     +      + R              +   +  
Sbjct: 518 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799
            +   W EL+  +   G+ N N  A+ PT +I+ I   + SI P    + ++     G  
Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
               +++ N                               +  + +  A+EI    ++++
Sbjct: 638 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 666

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +   + +DQ  SL L+  +  + + L+     AW  G+KT YY+R
Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712


>gi|332285600|ref|YP_004417511.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7]
 gi|330429553|gb|AEC20887.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7]
          Length = 949

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 147/641 (22%), Positives = 263/641 (41%), Gaps = 76/641 (11%)

Query: 322 MRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD 378
            RVA  LA  E    +++ A EF        F+ +      +GT     L +CF+  V D
Sbjct: 39  ARVAEALARVEPAKLRKQYAQEFL-WAMENGFIPAGRVNSAAGTDLQSTLINCFVQPVGD 97

Query: 379 DLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +        GI+ AL + A   +  GG+G +++ +R  GA + GT   + G I +++V 
Sbjct: 98  SITEEVDGKPGIYTALAQAAETMRRGGGVGYNFSGIRPRGARVKGTGSSASGPISYMRVF 157

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           + +   V   G R+GA  A L   H D+ EF+  ++    +R + ++ N +  + D FM+
Sbjct: 158 DRSCETVESAGSRRGAQMAVLNVTHPDIMEFITAKQ----ERGQLNNFNVSVGVSDAFMQ 213

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            V  +         E     +L G                  + V++ + A  +W  ++ 
Sbjct: 214 AVETDG--LFELSHEAEPTEELKGSG---------AYLRDDGLWVYKAVQAREIWDLIMQ 262

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             +    P + + D  N  +   +   + S+N C E  L     +   C LGS+NL A+ 
Sbjct: 263 STYAAAEPGVLYMDRINQENNLAYCEKIESTNPCGEQPLP----DYGCCCLGSLNLTAYV 318

Query: 612 ANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            +       FD++K+    + AVR+LDNV+      +++ +      R +GLG  G    
Sbjct: 319 TSPFSATAAFDFEKMKQATKLAVRMLDNVLIATKWPLDEQRLEAENKRRLGLGFTGLGDT 378

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L +L + Y S +  ++A +    +   A  ASV LAQERGA+   +              
Sbjct: 379 LIMLGLRYDSEQGRQLAADFARHMRDAAYEASVALAQERGAFPLLQA------------- 425

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDP 784
                  DE   +  ++   DELK+ ++  G+RNS+  +IAPT TI+       S  I+P
Sbjct: 426 -------DEYLNSEFAQRLPDELKQAIRQHGIRNSHLTSIAPTGTISLAFADNASNGIEP 478

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
           ++   Y ++             + +  ++D   E     +    G  G+I  +PD     
Sbjct: 479 AFSWFYKRTKR-----------MADGSKKDYTVEDHAYRVYRAMG--GDIGALPDA---- 521

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
             +A EI  +  +   +    ++D A S  + +  +        +Y QAW  GLK     
Sbjct: 522 FVSALEISAIDHMLMVASVAPYVDAAISKTVNVPADYPYDDFKDLYMQAWHKGLKGITTY 581

Query: 904 RSRSATSVEKST-LKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           R  +      S   +  DG    + +++ +       +  S
Sbjct: 582 RPNNILGAVLSVPGESQDGAPQPITLSEQDKRLVLTEVAKS 622


>gi|238063474|ref|ZP_04608183.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
 gi|237885285|gb|EEP74113.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
          Length = 972

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 124/637 (19%), Positives = 230/637 (36%), Gaps = 28/637 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 111 GYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILD 170

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 171 WYKEEGLIFKGGSGSGVNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF+  +    D  R   D      +    +  V           
Sbjct: 230 RAAKMVILDVDHPDIEEFVITKAREEDKIRALRDAGFDMDLGGNDIVSVQYQNANNSVRV 289

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G  F++          R + +    I A  L+R +    +E   P + + 
Sbjct: 290 SDEFMSAVENGGGFDLR--------GRLDGQTIETIEAKKLFRTIAQAAWECADPGLQYD 341

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
           D  N        G + +SN C+E        + + CNL S+NL+     +  F+ +K   
Sbjct: 342 DIINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVR 397

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I       EK  ++   +R +G+G     + L    +PY S +   +A
Sbjct: 398 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGRSVA 457

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM----N 739
                 ++  A   S ELA   GAY  +  +                 ++    +     
Sbjct: 458 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDAIKPAGTVATAIQ 517

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           R +   W +  K     G RNS    +APT TI  +    +  ++P    + + K    G
Sbjct: 518 REATKQWTQGNKIGDRYGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 577

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L+     +E + + +      G + +   +  +   +   A     I 
Sbjct: 578 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 637

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R       
Sbjct: 638 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 697

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
             S  K     + A       ++     +        
Sbjct: 698 PLSVAKPNKAVVEAAVEAAVEAAAVEKVVEKVIEYRP 734


>gi|290510979|ref|ZP_06550348.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           1_1_55]
 gi|289775972|gb|EFD83971.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp.
           1_1_55]
          Length = 713

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 184/740 (24%), Positives = 305/740 (41%), Gaps = 83/740 (11%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           +  ++   I    ++  + A   L     E      K  Q         + P       +
Sbjct: 1   MATTTAERITAAADFHALNAMLNLYD--SEGRIPFEKDRQAVEVFMTAQIQPNTLSFVSQ 58

Query: 262 EGVKARLLHESMMD------FDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH--IN 310
           E     L+ E   D      +D  ++     + R  AF    +LG    Y  Y L     
Sbjct: 59  EDKLTWLVREGYYDPQVLAGYDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALKTFDG 118

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
              +E      + VA+ LA  + ++ ++ +E    + S  F  +TPT  N+G +   +L 
Sbjct: 119 KHYLEDFADRCVMVALTLAQGDDQQARQLME---EMLSGRFQPATPTFLNAGKQQRGELI 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV+P +K
Sbjct: 176 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMK 235

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+ 
Sbjct: 236 MLEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDIT 295

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRK 548
            +   ++A   LFSP    D+  LYGK F   A  +   Q    E    R I A  L+++
Sbjct: 296 FQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQR 352

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   E
Sbjct: 353 LAEIQFESGYPYIMFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGE 410

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI TAVR L  V D+ +  ++      N    A
Sbjct: 411 DISCNLGSLNIAHT-----MDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHA 465

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPE ++  +     +++HA+  S+ LA+ER   ++ F+ S
Sbjct: 466 IGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQS 525

Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    +    + + E          +    R  W +L+  V   G+ N    A+
Sbjct: 526 RYASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAV 585

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N+                
Sbjct: 586 PPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNND---------------- 629

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                             ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 630 ---------------NLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 674

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 675 INKAQIYAWKKGIKTLYYIR 694


>gi|29469209|gb|AAO65322.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces murayamaensis]
          Length = 826

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 115/613 (18%), Positives = 219/613 (35%), Gaps = 36/613 (5%)

Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R 
Sbjct: 1   FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRS 60

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
               +    G + G + F++ A+ +A  +  G   R+ A    L+  H D+E F++ +  
Sbjct: 61  SKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVK 119

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             +  R   D              +            + ++       EF  A E   + 
Sbjct: 120 EEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVRVNDEFMKAVETGGKF 169

Query: 529 ADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             R  +   V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+
Sbjct: 170 GLRARMTGDVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCS 229

Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           E        +   CNL S+NL+         +  F+ ++ A  +   +  +D  I     
Sbjct: 230 EYMH----LDNTSCNLASLNLMKFLKDDGEGHQAFEVERFAKVVELVITAMDISICFADF 285

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             +K  ++    R +G+G     + L      Y S     +A      ++  +   S EL
Sbjct: 286 PTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAEL 345

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIG 757
           A   G Y  +  +                +      ++      +   W ++ +  +  G
Sbjct: 346 AAVVGPYDGYARNAAPHQRVMKQHADENTKAVRMDDLDSPIWAAATEAWQDVVRLGEKNG 405

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDL 815
            RN+    IAPT TI       +  ++P    + + K    G   +VN  +   L++   
Sbjct: 406 FRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGY 465

Query: 816 WDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQA 870
             E + + +      G++ +   +  +  ++   A     I  M  +   +  Q WI  A
Sbjct: 466 QPEQIEAIVAHIAEHGNVIDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGA 525

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  + L E  + + ++ +Y +AW MG+K     R         S       K       
Sbjct: 526 LSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAKTKEKEKAEVTEKA 585

Query: 930 DPNSSTHSLGIPS 942
           +         +  
Sbjct: 586 EAEIRKAVEKVVE 598


>gi|206576590|ref|YP_002236985.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
 gi|206565648|gb|ACI07424.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella
           pneumoniae 342]
          Length = 713

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 172/679 (25%), Positives = 286/679 (42%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--ING 311
           +     + EG     +        ++ L    +        +LG    Y  Y L      
Sbjct: 60  DKLTWLVREGYYDPQVLAGYDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALKTFDGK 119

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
             +E      + VA+ LA  + ++ ++ +E    + S  F  +TPT  N+G +   +L S
Sbjct: 120 HYLEDFADRCVMVALTLAQGDDQQARQLME---EMLSGRFQPATPTFLNAGKQQRGELIS 176

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV+P +K+
Sbjct: 177 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKM 236

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   +L   H D+  FLD R+   D++ R   ++    IPD+  
Sbjct: 237 LEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITF 296

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKM 549
           +   ++A   LFSP    D+  LYGK F   A  +   Q    E    R I A  L++++
Sbjct: 297 QLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRL 353

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   E 
Sbjct: 354 AEIQFESGYPYIMFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGED 411

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D    A TI TAVR L  V D+ +  ++      N    AI
Sbjct: 412 ISCNLGSLNIAHT-----MDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAI 466

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L    I Y SPE ++  +     +++HA+  S+ LA+ER   ++ F+ S 
Sbjct: 467 GLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSR 526

Query: 716 WDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    +    + + E          +    R  W +L+  V   G+ N    A+ 
Sbjct: 527 YASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAVP 586

Query: 768 PTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++    +G       F+ N+                 
Sbjct: 587 PTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNND----------------- 629

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                            ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 630 --------------NLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 675

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 676 NKAQIYAWKKGIKTLYYIR 694


>gi|10957414|ref|NP_051640.1| ribonucleoside-diphosphate reductase, alpha chain [Deinococcus
           radiodurans R1]
 gi|6460843|gb|AAF12547.1|AE001826_16 ribonucleoside-diphosphate reductase, alpha chain [Deinococcus
           radiodurans R1]
          Length = 702

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 170/716 (23%), Positives = 292/716 (40%), Gaps = 64/716 (8%)

Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272
           E N   +    +  +   + L   +++           L  E      E G+    L E 
Sbjct: 13  ELNNKVLAGNVVDTQHDTDALQAYFQEKVNPNTVFFHDL-REKIRYLTEHGLWDARLFER 71

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLAL 330
               D+  +       +     ++G    Y  Y          +E  +      A+  + 
Sbjct: 72  YSSEDVRQVFEKAYGYKFRFKAFMGAYKFYSEYAGMTPDRSRWLERYEDRLSITALARS- 130

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQ 388
              E+   A+E  + L +  F  +TPTL NSG  +  +L SCFL     D+L  I   L 
Sbjct: 131 ---ERVDEALELVHHLVNQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLDSITKTLS 187

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             A L+K  GG+G + + +R  G  + G    ++GV+   K+ ++     +Q G+R GA 
Sbjct: 188 FVAELSKGGGGIGVEASNLRARGESLRGIQNVTKGVLGVAKMLDNMLRYADQAGQRPGAG 247

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV- 507
             YL   H D  + L+ +K   D+  R   ++    IPD+FM++V        F P    
Sbjct: 248 AVYLSVMHADFSDLLNAKKIATDEDARLKTLSIGATIPDIFMEKVRCGEDIYQFYPHSFF 307

Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                +    ++   Y   +  AD   I+  +++SA  L   +     E+G+P++ F+  
Sbjct: 308 QETGREFTSIDWTKEY---QALADNPNIRK-KRVSARRLLEDIAVTQGESGYPYLLFEGN 363

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL---------GSINLLAHFANNQFD 617
            N  +P  +VG +  SNLC+EI   ++                   S NL +        
Sbjct: 364 ANRANPIPNVGTIKMSNLCSEILQPTTPSYFHPYGQEHRDRIGLDVSCNLASLVIEQTMH 423

Query: 618 YDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
              L   +  A+R+LDNV    + H +   K++N   R+IGLG MG  S L    + Y S
Sbjct: 424 GGDLGRVVGAAIRMLDNVARSTSVHEVPAVKRANDEMRSIGLGAMGLHSFLAGKELIYGS 483

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           PEA+E  D     + +HA  AS+E+A++ G  +S F+GS +  G      +      R  
Sbjct: 484 PEALEFVDVFFAAVHYHARKASMEIARDTGFVFSGFEGSRYQSGEHFAQYLERDFAPRRP 543

Query: 736 LA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                       +R  W++L + +KT G+ +S  MAIAPT +I+ +   S SI P  + +
Sbjct: 544 EVAALFEGHTLPTRADWEQLVEDIKTHGLAHSFVMAIAPTGSISYVSHASASIMPITEKV 603

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
             +++           L                                +D +  +  A+
Sbjct: 604 ETRTSNKARTIYPMPHL-------------------------------SEDTEWYYEEAY 632

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++D   ++++ +  QK +DQ  S  L+L    + + L   Y  A+ +G+KT YY R
Sbjct: 633 DMDQRRVLDTVAAAQKHVDQGISCTLFLPASATTRTLQSYYLYAYRLGIKTLYYTR 688


>gi|331701738|ref|YP_004398697.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129081|gb|AEB73634.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           buchneri NRRL B-30929]
          Length = 721

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 164/715 (22%), Positives = 297/715 (41%), Gaps = 82/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    K+  +    +   L  + F   I+                +  L   L  ++
Sbjct: 32  KEALEAFLKENVQPNLMKFDSL-SDRFDYLIKNNYYEADFIHKYQLSFVEKLYQYLN-DQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  N + + + ++F  RVA          E+ A++  + +  
Sbjct: 90  DFHFKSFMAAYKFYAQYALKTNDNDLYL-ESFLDRVAANALFFADGDEQLAMDLADEIVH 148

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G  +  +  SCFL    DD+  I   +     L++  GG+G + + +
Sbjct: 149 QRYQPATPSFLNAGRENRGEFVSCFLIQTTDDMNTIGRTINSALQLSRIGGGVGINLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K
Sbjct: 209 REAGAPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + +  +A   LFSP +V   + +     +I  E    
Sbjct: 269 ENADEKIRLKTLSLGVTVPDKFYQLIKADADMYLFSPYDVEREYGVPFSYVDITKEYDNL 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K  +KI A  L  ++  +  E+G+P+I   D  N        G +  SNLC+E
Sbjct: 329 VANDKISK--KKIKARDLETEISKLQQESGYPYIINIDTANR--SNPIAGRIVMSNLCSE 384

Query: 588 ------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
                               +   CNLGS N+    A      D    ++ + VR L  V
Sbjct: 385 ILQVQTPSTVDNQQHYIKMGKDISCNLGSTNINNMIAG-----DDFGHSVESMVRALTFV 439

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  N   +   +K N    +IGLG MG  S L   H+ Y SPE++E        +++ +
Sbjct: 440 TDHSNIDVVPSIQKGNKESHSIGLGGMGLHSFLAKHHMYYGSPESIEFTSVYFMLLNYWS 499

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNRT-SRLPWD 747
           + AS ++A+ER   + +F+ S +  G +    +        AEV+     +   ++  W+
Sbjct: 500 LVASNKIAKERKETFVNFENSKYADGSYFDKYLDGSFAPKSAEVKALFKDDWIPTKEDWE 559

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806
            LK+ V   G+ + N +A+AP  +I+ I   + S+ P    +  +  +  G       +L
Sbjct: 560 NLKESVMKDGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQESKIGKIYYPAPYL 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
            N+                                   + +A+++D   +I+  +  Q+ 
Sbjct: 620 SND-------------------------------TMPYYTSAYDMDMRKVIDIYAAAQQH 648

Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           IDQ  +L L++                   + + L+ +   A+  G+K+ YY+R+
Sbjct: 649 IDQGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAYKKGVKSIYYIRT 703


>gi|157363198|ref|YP_001469965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga lettingae TMO]
 gi|157313802|gb|ABV32901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermotoga lettingae TMO]
          Length = 839

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 174/696 (25%), Positives = 293/696 (42%), Gaps = 108/696 (15%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR---- 338
           ++  +        ++IL +RYF+    G  IE        RVA  +A  E          
Sbjct: 6   IEKYKKIQPSQNAVRILTERYFIKTPAGEFIEKSWHDVAHRVARVVASAELINNPALENL 65

Query: 339 ------------AVEFYNLLSSFHFMCSTPTLFNSGT----------------------- 363
                         EF++LL+S  F+ ++PTLFNSG                        
Sbjct: 66  SKSEKLDYIKLLEKEFFDLLASRIFIPNSPTLFNSGMGVDYELLYKPLEQMELDDYSKII 125

Query: 364 ----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
                   LS+CF+  V D + GIF A++E A++ K  GG+G++++ +R  G+ + GT+G
Sbjct: 126 QMRNHLHMLSACFVVPVEDSIDGIFTAVKEYALITKAGGGIGSNFSSLRPNGSFVAGTHG 185

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHD 478
           K+ G I F+ V N     V QG +R+GA+   L   H D+ +F+  +K    +   R  +
Sbjct: 186 KASGPISFMHVFNSAVSVVEQGYRRRGALMGILNIDHPDIMDFISAKKGNDGEKVLRFFN 245

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA----DRGEI 534
           ++       + M+R                          E     YER      +  + 
Sbjct: 246 ISVG-----IPMRR--------------------------EELLRIYERDGTIRLNHSKW 274

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
              ++I    + +KM    +ETG P + F    N          + S+N C EI L +  
Sbjct: 275 HGEKEIKVREIIQKMAQSAWETGDPGMVFLGEMNRYYALYPHKEIISTNPCGEIGLGAY- 333

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                CNLGSI+L   +  N  D+D L    R AVR LDNVID+N   I+K  K+    R
Sbjct: 334 ---EACNLGSIDLAKLYTQNGVDWDALEKATRIAVRFLDNVIDVNVFPIDKISKAVKESR 390

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG+MGF   L+ + IPY S EA  +A   M F++ H+   S +L +E+G +  F+ S
Sbjct: 391 RLGLGIMGFADLLYKMDIPYDSEEARRLAKNIMAFMALHSHEESSKLGEEKGNFPLFEQS 450

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW-DELKKRVKTIGMRNSNCMAIAPTATIA 773
            +              +     +M+ +       E  + V     RN   +AIAPT +I+
Sbjct: 451 RYH-----------TEDDFVPFSMDESDYDEEIFEHFRNVAPKFKRNVAVLAIAPTGSIS 499

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGD------FTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           NI   S  ++P++   YV+     +         VN  L  +L +  +     I D    
Sbjct: 500 NIADTSSGLEPNFLLAYVRYVNKQNSDEREPLFYVNEVLKQKLPEDLINS---IKDKLVE 556

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
           DG++ ++  I +++K++   + +I P+  +      Q ++D   S  + L    +   + 
Sbjct: 557 DGTLKHL-EIDEEIKRVFVVSHDIKPIDHLLMQEAFQCYVDNNISKTINLPNSATVDDVV 615

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            +Y +A    ++     R  S  +   ++ K +  K
Sbjct: 616 EVYIEALKHKIRGLTIYRDGSLQTQVLTSTKSLKTK 651


>gi|3183696|emb|CAA07028.1| ribonucleotide reductase large subunit [Felid herpesvirus 1]
          Length = 785

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 167/715 (23%), Positives = 290/715 (40%), Gaps = 87/715 (12%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL----------------- 301
           +I   VK   L + +   +L  L   +   RD +    G++ +                 
Sbjct: 79  HIRIRVKTTTLDKWLNSMELALLPQVI---RDISINMPGVKRVLEQFEIHDYEPLCELGL 135

Query: 302 ------YDRYFLHINGSRIEMPQAFFMRVA----------MGLALKETEKEKR--AVEFY 343
                  + Y  ++    +E    FF+R+A          M  AL             F+
Sbjct: 136 QSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFKSFF 195

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLG 401
             LS    + +TP +   G     L+SC+L +  + D    I   +++ A +    GG+G
Sbjct: 196 FYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRGGIG 255

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
                     +        ++GV+P LK+ +   +A++   +  G VC Y+E WH D+  
Sbjct: 256 ICLQNFNKKLSK-----ECTKGVLPLLKLLDSMTIAISDSERPTG-VCIYVEPWHADIRS 309

Query: 462 FLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLY 514
            L++R     D+  R  ++ +  W PDLF  R  ++        WTLF   E   L  LY
Sbjct: 310 ILNMRGMLASDEDSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFDDAESH-LSKLY 368

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           GKEF   YE  E      +      +    +   ++     TG P++ FKD CN      
Sbjct: 369 GKEFNEEYERLEAAGMGVD-----SLPIQEMAYLIVRSAIMTGSPFLMFKDACNRHYHFD 423

Query: 575 HVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD------YDKLASTIRT 627
             G  + +SNLCTEI   ++     VCNL SI+L         D         L     T
Sbjct: 424 TRGDALTTSNLCTEIIQKATDTRRGVCNLISIDLPRCLRRIAHDQSLYFSIPLLIRAAYT 483

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A   ++ ++       E   +    +R++GLG+ G  +    L +   S EA  +  + +
Sbjct: 484 ATIFVNPMMRAGNFPTEATMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEARRLNPQIL 543

Query: 688 EFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           E +   +I AS  L +     + +F+ S++ +G+ P D+                    W
Sbjct: 544 ESLLLGSIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTP---------LIHFKKW 594

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +L+  +   G+ NS  +A+ PT + + +   S+   P + NL+ K   +G+    N  L
Sbjct: 595 QQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGEILRPNLQL 654

Query: 807 VNELKQ---RDLWDEAMISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESAS 861
           +  +++   R+    A+IS L+    SI     +           TAFE D   LI+  +
Sbjct: 655 MRTIRRLFPRECARLAVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQRQLIDMCA 714

Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++DQ+QS++L++ EP        ++  +   A+  GLKT  YY + + AT+
Sbjct: 715 DRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKKATN 769


>gi|209516306|ref|ZP_03265163.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. H160]
 gi|209503242|gb|EEA03241.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia sp. H160]
          Length = 861

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 146/632 (23%), Positives = 256/632 (40%), Gaps = 80/632 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              L +L ++Y         +     F RVA G+A  E  + + +VE  F + L      
Sbjct: 32  QFSLDVLLEKYAKGDE----QSADDVFRRVARGVAEAEPPELRASVEALFVDNLRHGALG 87

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 88  AGRIMSAAGSGIAATLINCFVQPVGDSIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNF 147

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +H TN  + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 148 SAIRPKGARVHTTNSAASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 207

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM+ V  +  W L    E S      G         
Sbjct: 208 AKHSKG----RWNNFNVSVGVTDEFMRAVENDEPWQLVHRAEPSPALRSAGDV------- 256

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W +++   ++   P I F    N  +  + V  + ++N 
Sbjct: 257 ---RQREDGLWVYSEHEARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 313

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL                 FD+D LA   RT VR LD+V
Sbjct: 314 CGEQPLPAY----GCCNLGPLNLTRFVVDPFAQLQGRQPSFDWDGLAWRTRTQVRFLDDV 369

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + +    +   R IG+G  G    L +L + Y S E  + A      +   A 
Sbjct: 370 LDVTLWPLPQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAY 429

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASV+LA+ERGA+  F  + +                   L     +    D++++ ++ 
Sbjct: 430 RASVDLAKERGAFELFDAARY-------------------LETGTFASRLPDDIQQAIRR 470

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++            ++ +  + 
Sbjct: 471 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRTK-----------MMADGGRE 519

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E     L    G  G++ R+PD        A E+     ++  +  Q ++D + S 
Sbjct: 520 SFDVEDYAYRLYRELG--GDVTRLPD----YFVNALEMSARDHLDMMAAVQPYVDTSISK 573

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + +  +      + +Y  AW  GLK     R
Sbjct: 574 TVNVPADYPFDAFESLYFDAWKSGLKGLATYR 605


>gi|319408169|emb|CBI81822.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           schoenbuchensis R1]
          Length = 711

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 178/704 (25%), Positives = 298/704 (42%), Gaps = 78/704 (11%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  ++     +++ + +D  ++    K+   F F    +LG 
Sbjct: 43  LQHVNQNTVFFHDLKEKIDYLIEEGYYEKALFELYDFSFVKKLFKHAYAFKFRFPTFLGA 102

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +    RV +         +  A    + + +  F  +TP
Sbjct: 103 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGNKTLAECLVDEIITGRFQPATP 159

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I 
Sbjct: 160 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 219

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GV+P +K+  D     NQ G R+GA   YL   H+D+  FLD ++   D++ R
Sbjct: 220 QIENQSSGVLPVMKLLEDAFSYANQLGARQGAGAVYLHAHHLDIMTFLDTKRENADEKVR 279

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFSP    D+  + GK F         ++     K
Sbjct: 280 IKTLSLGVVIPDITFELARNNEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNSK 336

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  +KISA   ++ +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   + +
Sbjct: 337 IRKKKISARVFFQTLAEIQFESGYPYLLFEDTANRTNPI--AGRINMSNLCSEILQVNEA 394

Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            E               CNLGS+N+     ++ F +     T+ TAVR L  V D+ N  
Sbjct: 395 SELETDLTYRTIGNDISCNLGSMNIAKAMESSDFGW-----TVETAVRALTAVSDMSNIA 449

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +    K N    AIGLG M     L    I Y SPEA++  +     +++H + AS  +
Sbjct: 450 CVPSIAKGNSESHAIGLGQMNLHGFLARERIYYGSPEAIDFTNIYFYTVAYHVLRASNLI 509

Query: 702 AQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752
           A+ER   +  F+ S +  G F    I    + +  L      R          W ELKK 
Sbjct: 510 ARERQKVFVGFEKSAYADGSFFTKYIETEWKPQFPLVQELFERNNIVIPNQEDWKELKKL 569

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811
           V   G+ N N  AI PT +I+ I   + SI P    + ++     G       ++ N   
Sbjct: 570 VIEHGLYNRNLQAIPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 627

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                N++         +  A+EI P  +I++ +   + +DQ  
Sbjct: 628 ---------------------NLDF--------YQDAYEIGPEKIIDTYAAATQHVDQGL 658

Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY--LRSRSATSVE 912
           SL L+  +  + + ++     AW  G+K+ YY  LR ++ +  E
Sbjct: 659 SLTLFFPDTATTRDVNCAQIYAWKKGIKSVYYIRLRQKALSGTE 702


>gi|194290033|ref|YP_002005940.1| ribonucleotide reductase subunit alpha [Cupriavidus taiwanensis LMG
           19424]
 gi|193223868|emb|CAQ69877.1| Putative ribonucleotide reductase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 828

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 150/634 (23%), Positives = 257/634 (40%), Gaps = 80/634 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTP 356
           ++L ++Y      S  ++ Q    RVA  LA    E ++E  +  F        F+ +  
Sbjct: 20  EVLLEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWSARFL-WAQENGFVPAGR 74

Query: 357 TLFNSGTRHP-QLSSCFLTTV-------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
               +GT     L +CF+  V        D    I+ A+ + A   +  GG+G D++ +R
Sbjct: 75  INSAAGTGIQATLINCFVQPVGDSVSEPRDGRPSIYTAVAQAAETMRRGGGVGYDFSAIR 134

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +  T+ ++ G + F+KV + +   V   G R+GA    L   H D+E F+  +  
Sbjct: 135 PAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-- 192

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D+    + N +  + D FM+ V  +A   L    E        G     AY   + Q
Sbjct: 193 ---DKGELSNFNISIGVTDDFMQAVQADAEVELVHEAEPGADMIAAG-----AYRRDDGQ 244

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                  V+R++ A  LW +++   ++   P I F    N  +   +   + ++N C E 
Sbjct: 245 ------WVYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNNLYYCERIEATNPCAEQ 298

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L S       C LGSINL             FD+D  A  +R A R+LDNV+D+    +
Sbjct: 299 PLPSY----GCCCLGSINLTRFVRQPFTPQAAFDFDAFAEVVRVATRMLDNVLDVTFWPL 354

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + +   H  R +GLG +G  SAL +L + Y +  A ++A    E +   A  AS ELA 
Sbjct: 355 PEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARISERMRDEAYLASTELAT 414

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ++GA+  F    + +  F                    +      +++ +   G+RNS+ 
Sbjct: 415 QKGAFPLFDAEAYLRSGF--------------------ASRLPQTVREAIGRHGLRNSHL 454

Query: 764 MAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           ++IAPT TI  A     S  I+P++   Y +              + +   R        
Sbjct: 455 LSIAPTGTITLAFADNASNGIEPAFSWTYNRRKR-----------MPDNSYRSFEVADHA 503

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             L  H G   ++ ++P+       TA ++  +  +      Q +ID + S  + +  + 
Sbjct: 504 WRLYRHMG--ADMAQLPEA----FVTALQMSALDHMRMLEAVQPYIDTSISKTVNVPEDY 557

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
             +    +Y +AW  GLK     R  S      S
Sbjct: 558 PYEAFRNLYLEAWKAGLKGLATYRPNSVLGAVLS 591


>gi|304390567|ref|ZP_07372520.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|304326323|gb|EFL93568.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 733

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 164/684 (23%), Positives = 274/684 (40%), Gaps = 70/684 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     +EEG       +      +  L       +     +LG    Y  Y L   +G
Sbjct: 79  REKLDYLVEEGYYEEDTLKQYSFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDG 138

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLS 369
            R  E  +    RV M         E+ AV+    + +  +  +TPT  N+G +   ++ 
Sbjct: 139 KRYLERFED---RVCMVALYLARGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMV 195

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I   +     L+K  GG+    T +R  GA I     +S GV+P +K
Sbjct: 196 SCFLVRLEDNMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMK 255

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G R+GA   Y+  +H D+  FLD ++   D++ R   ++    +PD+ 
Sbjct: 256 LLEDSFSYANQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDIT 315

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547
            +         LFSP    D+  +YG  F      E Y    D   I+  +KI A   ++
Sbjct: 316 FELARNKEPMYLFSP---YDVERVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQ 371

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEET 597
            +  + FE+G+P+I F+D  N  +P             +  V   ++  E    +   + 
Sbjct: 372 TLAEIQFESGYPYIVFEDTVNRANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKD 431

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAI 656
             CNLGS+N+     +        A +I  A+R L  V D+     +   ++ N    AI
Sbjct: 432 ISCNLGSMNIAKTLESP-----DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAI 486

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715
           GLG M     L    I Y S E ++  +      +F+A+ AS  LA ERG  +  F+ S 
Sbjct: 487 GLGAMNLHGCLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQ 546

Query: 716 WDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +       D     A+VR+    +     +   W  L   +K  G+ N N  AI 
Sbjct: 547 YASGEYFEKYLQGDWTPRTAKVRELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIP 606

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N+                 
Sbjct: 607 PTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTND----------------- 649

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                             +  A+EI    +I++ +   K +DQ  SL L+  +  + + +
Sbjct: 650 --------------NLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDV 695

Query: 886 DFIYRQAWLMGLKTTYYLRSRSAT 909
           +     AW  G+K+ YY+R R A 
Sbjct: 696 NKAQIYAWRKGIKSLYYIRLRQAA 719


>gi|71894416|ref|YP_278524.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           synoviae 53]
 gi|71851204|gb|AAZ43813.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma
           synoviae 53]
          Length = 724

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 162/676 (23%), Positives = 288/676 (42%), Gaps = 71/676 (10%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEM 316
            +E       +  ++    L  L   ++        ++G+   ++ Y L        +E 
Sbjct: 62  LVENQYYEEEVVNNVTKAQLEELYQLIEKYNHRFPSFMGVVKFFNSYCLKSFDGSKFLES 121

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
                +  A+ L  K+ E           + S  F  +TPT  N+G +   +  SC+L  
Sbjct: 122 YSERALMNALFLGGKDFESV---KNILVEILSGRFQPATPTFLNAGKKQRGEYVSCYLLR 178

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D++  I  A+  +  L+K  GG+    T +R  GA I    G++ GVIP +K+  D+ 
Sbjct: 179 VEDNMESIARAVTTSLQLSKRGGGVALSLTNLREFGAPIKQIQGQATGVIPVMKILEDSF 238

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              NQ G+R+GA   YL   H D+  FLD ++   D++ R   ++    +P++  +    
Sbjct: 239 SYANQLGQRQGAGAVYLHAHHPDIMTFLDSKRENADEKIRIKSLSLGIVVPNITFELAKN 298

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554
           N    LFSP    D+  +YG  F       E        K+ +  + A   ++ +  + F
Sbjct: 299 NEDMALFSP---YDVEKVYGVPFSDIKVTEEYYNMLNNPKIRKTFVKARKFFQTVAELHF 355

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNL 602
           E+G+P++ F D  N R    + G +  SNLC+EI  +SS  E               CNL
Sbjct: 356 ESGYPYLLFDDTVNDR--NPNAGRIVMSNLCSEIVQSSSLTEYDTDLTVKKLGEDISCNL 413

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           GS+N+     N   D+ K       ++  +    D++C         N  +RA+GLG M 
Sbjct: 414 GSMNVDKLM-NAGSDFGKSVFYAIKSLDHVSRGCDLSCA--PSINHGNRNNRALGLGAMN 470

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVF 721
                 +  + Y SPEA+E  +     +++HA  AS  LA+E    Y +FK S +  G +
Sbjct: 471 LHGFFAVNEVYYDSPEALEFTNLFFYALAYHAYKASNLLAKERNETYKNFKSSKYATGEY 530

Query: 722 PIDSIG-----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
                             + E+  +  +   +++ W EL + +K  G+ NS+ +A+APT 
Sbjct: 531 FDKYTKCKSDLYTAKLPKVIELFKKHNVTLPTQIDWSELVESIKKYGLANSHVLAVAPTG 590

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +I+ +   + S+ P    + V+    G    V                     L Y    
Sbjct: 591 SISYLSSCTPSLQPVVSPVEVR--KEGKLGRV-------------------YSLAYK--- 626

Query: 831 IGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
                 + ++  K +   A+E+ P  +I+  ++ QK +DQA SL L++++  + + L+  
Sbjct: 627 ------LDENNYKYYKDGAYELGPNPIIDIVAQAQKHVDQAISLTLFMNDKATTRDLNKA 680

Query: 889 YRQAWLMGLKTTYYLR 904
           Y +A+     + YY+R
Sbjct: 681 YIRAFKAKCSSIYYVR 696


>gi|284009250|emb|CBA76358.1| ribonucleoside-diphosphate reductase alpha chain [Arsenophonus
           nasoniae]
          Length = 709

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 170/691 (24%), Positives = 285/691 (41%), Gaps = 66/691 (9%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     + E      +        +  L       +     +LG    Y  Y L   +G 
Sbjct: 56  EKLDFLVAENYYESAILAQYEFTFIKKLFQQAYNHKFRFQTFLGAFKYYTSYTLKTFDGR 115

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA      ++ A +  N + S  F  +TPT  N G +   +L S
Sbjct: 116 RYLERYEDRVCMVALTLAQG---NQELASQLVNEIISGRFQPATPTFLNCGKKQRGELVS 172

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K+
Sbjct: 173 CFLLRIEDNMESIGRSVNSALQLSKRGGGVAFLLTNLREAGAPIKLIENQSSGVIPVMKM 232

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 233 LEDAFSYANQLGARQGAGAVYLHAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 292

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                N    LFSP ++   + +     EIA      +    +    +KI+A   +  + 
Sbjct: 293 HLAKNNQDMYLFSPYDIERCYGVPMS--EIAITEKYSEMVNNKNIRKQKINAREFFLTLA 350

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------LG 603
            + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   + +                
Sbjct: 351 EIQFESGYPYILFEDNANRLNPIY--GRINMSNLCSEILQVNDASIYDENLDYRHVGKDI 408

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +       D    A +I  A+R L  V D+    ++   ++ N    AIGLG M 
Sbjct: 409 SCNLGSMNIAKTMDSPNFAHSIEIAIRALTAVSDMSQIQSVPSIQEGNKKSHAIGLGQMN 468

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF 721
               L   HI Y S E ++  +     ++++A+ AS +LA ER  A+S F  S +  G +
Sbjct: 469 LHGYLAREHIYYGSEEGIDFTNIYFYTVTYYALQASNKLAIERQHAFSGFAHSKYASGEY 528

Query: 722 PIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               I    + + E         A++  +   W +LK+ +   G+ N N  AI PT +I+
Sbjct: 529 FEKYINQQWQPKTEKIKQLFQRSAIHIPTCEDWQQLKQSIMEHGIYNQNLQAIPPTGSIS 588

Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++     G       +L N                        
Sbjct: 589 YINHSTSSIHPIVARIEIRKEGKIGRVYYPAPYLTN------------------------ 624

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                  +  + +  A++I    +I++ +   + +DQ  SL L+   + + + ++     
Sbjct: 625 -------ENLEYYQDAYQIGAEKIIDTYAAATQHVDQGLSLTLFFTDDATTRDINRAQIY 677

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           AW  G+KT YY+R      + +STL+G + K
Sbjct: 678 AWKKGIKTLYYIR------IRQSTLEGTEVK 702


>gi|238759172|ref|ZP_04620340.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
 gi|238702588|gb|EEP95137.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           aldovae ATCC 35236]
          Length = 709

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 184/737 (24%), Positives = 306/737 (41%), Gaps = 77/737 (10%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S S+L+   + +   L + +     +  ++ AR    +   +     +   +K  +    
Sbjct: 5   SSSELDYHSLNAMLNLYDADGHIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKLDY---- 60

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
                     +EEG   + + E      +  L      ++     +LG    Y  Y L  
Sbjct: 61  ---------LVEEGYYEKEVLERYDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKT 111

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +     VA+ LA+        A E    + S  F  +TPT  N G +   
Sbjct: 112 FDGKRYLERYEDRVCMVALTLAVG---NPTLARELVEEIISGRFQPATPTFLNCGKKQRG 168

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  A+     L+K  GG+    + +R +GA I     +S GVIP
Sbjct: 169 ELVSCFLLRIEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 228

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 229 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 288

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           D+  +    N    LFSP +V  ++ +   E     E Y    D   I+  + I A   +
Sbjct: 289 DITFELAKNNEEMYLFSPYDVEQVYGVPMSEIS-ISEKYREMVDNKRIRKSK-IKAREFF 346

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AV 599
           + +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   +S+ E         +
Sbjct: 347 QVLAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNSATEYNDDLSYRHI 404

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
               S NL +    +  D      TI TA+R L  V D+ N  ++   +K N    AIGL
Sbjct: 405 GKDISCNLGSLNIAHTMDSPDFGKTIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGL 464

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWD 717
           G M     L    I Y S EA++  +     + +HAI AS +LA ERG+Y   F  S + 
Sbjct: 465 GQMNLHGYLARERIFYGSEEALDFTNIYFYNVVYHAIRASNQLAMERGSYFKGFDQSTYA 524

Query: 718 QGVFPID-----SIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +             A+VR+  A    S   +  W  L++ V   G+ N N  A+ PT
Sbjct: 525 SGHYFTKYIEQGWQPKTAKVRELFATAGISIPNQQDWTALRQSVMEHGIYNQNLQAVPPT 584

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G       ++ N+                   
Sbjct: 585 GSISYINHSTSSIHPIISPIEIRKEGKIGRVYYPAPYMTND------------------- 625

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                         + +  A++I P  +I++ +   + +DQ  SL L+  +  S + ++ 
Sbjct: 626 ------------NLEYYHDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTASTRDINK 673

Query: 888 IYRQAWLMGLKTTYYLR 904
               AW  G+KT YY+R
Sbjct: 674 AQIYAWKKGIKTIYYIR 690


>gi|315657773|ref|ZP_07910653.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491570|gb|EFU81181.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 733

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 167/722 (23%), Positives = 285/722 (39%), Gaps = 83/722 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  +  AR    +   +     +   +K  +              +EEG       E   
Sbjct: 54  DADREAARQYFLQHVNKNTVFFHDLREKLDY-------------LVEEGYYEAETLEQYN 100

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332
              +  L       +     +LG    Y  Y L   +G R  E  +    RV M      
Sbjct: 101 FEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLA 157

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D++  I   +    
Sbjct: 158 RGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSAL 217

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   Y
Sbjct: 218 QLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 277

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           +  +H D+  FLD ++   D++ R   ++    +PD+  +         LFSP    D+ 
Sbjct: 278 ISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVE 334

Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F      E Y    D   I+  +KI A   ++ +  + FE+G+P+I F+D  N 
Sbjct: 335 RVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNR 393

Query: 570 RSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
            +P             +  V   ++  E    +   +   CNLGS+N+     +      
Sbjct: 394 ANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKTLESP----- 448

Query: 620 KLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             A +I  A+R L  V D+     +   ++ N    AIGLG M     L    I Y S E
Sbjct: 449 DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDE 508

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV 732
            ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +       D     A+V
Sbjct: 509 GLDFTNMYFYATAFYALKASHALAIERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKV 568

Query: 733 RDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           R+    +     +   W  L   +K  G+ N N  AI PT +I+ I   + SI P    +
Sbjct: 569 RELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKI 628

Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            ++     G       ++                     +G++             +  A
Sbjct: 629 EIRKEGKIGRVYYPAPYM--------------------TNGNL-----------DYYQDA 657

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   K +DQ  SL L+  +  + + ++     AW  G+K+ YY+R R 
Sbjct: 658 YEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQ 717

Query: 908 AT 909
           A 
Sbjct: 718 AA 719


>gi|322411233|gb|EFY02141.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 728

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 176/726 (24%), Positives = 304/726 (41%), Gaps = 82/726 (11%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSR 313
               I+EG   + + +   D  +   A    Y++D+ F   +G    Y  Y L   +G  
Sbjct: 55  LAYLIKEGYYEQAIFDPYPDDVIKE-AFQYAYQQDYRFLNLMGAMKFYQSYALKTLDGKY 113

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +    RV M         +         +    F  +TPT  N+G +   +  SC
Sbjct: 114 YLETVED---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISC 170

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +L  + D++  I  A+  +  L+K  GG+    T +R +GA I G   ++ G++P +K+ 
Sbjct: 171 YLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLL 230

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   +     IPD+  +
Sbjct: 231 EDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQ 290

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550
              +N    LFSP    D+  +YGK+        E         + +  ISA  L++ + 
Sbjct: 291 LAKENKEMALFSP---YDIKRVYGKDMSDISITEEYNKLLANPAIKKTYISARKLFQLIA 347

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETA 598
            + FE+G+P++ F D  N R+P    G +  SNLC+EI   S               E  
Sbjct: 348 ELHFESGYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDI 407

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
            CNLGSIN+         D    +  I T++R LD V    +       +K N  + A+G
Sbjct: 408 CCNLGSINIAEA----MADAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANHAVG 463

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L   H+ Y S EAV+  D     +++HA  AS +LA+E+GA++ F+ S + 
Sbjct: 464 LGAMNLHGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYA 523

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPT 769
            G +    +   A+ + +                  W  L + ++T G+ N++ +A+APT
Sbjct: 524 DGSYFKQYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPT 583

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   + S+ P    + V+   +     V ++                        
Sbjct: 584 GSISYLSSCTPSLQPVVAPVEVRKEGNLGRIYVPAY------------------------ 619

Query: 830 SIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                 +I  +    +   A+E+ P  +I+  +  QK +DQA SL L++ +  + + L+ 
Sbjct: 620 ------QINQENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNR 673

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            Y QA+ +   + YY+R R                L      D +S    +       ++
Sbjct: 674 SYIQAFKLKCASIYYVRVR-------------QEVLAGSEQYDEDSQLDMVDKNGLTDTN 720

Query: 948 TECEVC 953
            EC+ C
Sbjct: 721 NECQSC 726


>gi|255656921|ref|ZP_05402330.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium
           difficile QCD-23m63]
 gi|296452238|ref|ZP_06893945.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP08]
 gi|296877590|ref|ZP_06901621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP07]
 gi|296258925|gb|EFH05813.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP08]
 gi|296431441|gb|EFH17257.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium
           difficile NAP07]
          Length = 699

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 156/699 (22%), Positives = 291/699 (41%), Gaps = 59/699 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE L++  ++  +    +   L  E     I+EG  ++ +        +  +   +  ++
Sbjct: 25  REALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSMDFIKNIYEIIDKQK 83

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                Y+     Y  Y L  N     +E      + VA+ L       +   +   + + 
Sbjct: 84  FEFQSYMSANKFYQNYALKSNDGKKILETYNDKVLIVALTLG---NGNKDLVLNLADKIV 140

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+   R  ++ SCFL +V D   GI  A+  +  L+K  GG+  + + 
Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I    G + GV+   K+   +    NQ G R+G+   YL  +H D E  +D +
Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD FM+   +N     F P  V   + +   E E   + Y+
Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MNKWYD 319

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +  +  +I+  ++I+   +  K+  M  E+G+P++ + D  N     + +G++  SNLC 
Sbjct: 320 KLVNDNDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDIGIIKMSNLCC 378

Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638
           EI    +  E              S NL +    N  D   + ST+ TA+R L  V D  
Sbjct: 379 EIFQYQTHSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +     SN    +IGLG M     L   +I Y S +A++ ++     + +++I AS
Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498

Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748
           +++A E    +  F  S + +G         +    +    +V+     +   ++  W +
Sbjct: 499 MKIAIEKNQTFEGFDKSEYAKGRNSKVLSKYYEQSYLPKSEKVKALFEGIYIPTKEDWTK 558

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L   VK  G+ N+  MAIAPT +I+ +   + SI P  + + V++           FL N
Sbjct: 559 LLDEVKEKGIYNAYLMAIAPTQSISYVQNSTSSIMPITEPVEVRTYGDSTTIYPMPFLTN 618

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +             ++                    + +A+ +D   +I+  +  Q  +D
Sbjct: 619 D-------------NIL------------------YYQSAYRMDMRKVIDLVATVQNHVD 647

Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q  S  L++ +  + + +   Y  A+  GLK+ YY R++
Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686


>gi|320103134|ref|YP_004178725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Isosphaera pallida ATCC 43644]
 gi|319750416|gb|ADV62176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Isosphaera pallida ATCC 43644]
          Length = 1048

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 131/666 (19%), Positives = 228/666 (34%), Gaps = 40/666 (6%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL--------SSFHFMCS 354
           D YF        E        + +             V  Y+            +     
Sbjct: 116 DGYFATKEDG--ERFYDELTALCLFQYGSFNSPVWFNVGLYHQYGIAGSSTNWRWDEETR 173

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           T    N+    PQ S+CF+ +V DD+  I       AML KY  G G D + +R     +
Sbjct: 174 TVVQTNTAYEFPQGSACFIQSVQDDMADIMRLATSEAMLFKYGSGTGTDLSTLRSSKEKL 233

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            G  G+  G + F+KV +  A  V  GGK R+ A    L+ WH D+ EF++ +       
Sbjct: 234 AG-GGRPSGPVSFMKVYDAIASVVKSGGKTRRAAKMQTLKVWHPDIVEFIECKVKEERKA 292

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
                              V         + +      D + +  E   E        G 
Sbjct: 293 HALIRQGYDANFNGEAYSSV------MFQNANLSVRATDAFLRAVEEDGEWVTYAVTTG- 345

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            K      A  L  ++    ++ G P + ++D         +   ++SSN C+E      
Sbjct: 346 -KPMGVYRARDLMERIAQSAWQCGDPGMQYEDTIQRWHTCPNTAPINSSNPCSEYMF--- 401

Query: 594 SEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             + + CNL SINL+     +  FD ++  +  R  +   + ++D   +  ++   ++H 
Sbjct: 402 -IDDSACNLASINLMKFRREDGTFDVERFRAACRIYLTAQEILVDHVSYPTDRIALNSHR 460

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG     S +      Y S     +A      +   A   S  +A   G +  F 
Sbjct: 461 FRPLGLGYANLGSLIMASGRAYDSEAGRALAAGITAVMHGEANLTSARIAAHLGPFEGFA 520

Query: 713 GSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            +            D++  +        +   +R  W E  +  +  G RNS    IAPT
Sbjct: 521 VNREPMLKVMEMHRDAVERIDPTLCPANVLEAARAVWKECLEMGREHGFRNSQVTVIAPT 580

Query: 770 ATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            TI+ +    +  I+P    + Y      G   +VN  +   LK     DE +   L + 
Sbjct: 581 GTISFMMDCDTTGIEPDIALVKYKNLAGGGMLKIVNRTVPLALKTLGYDDEEIKRVLAHV 640

Query: 828 D--GSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD 878
           D   ++     +  +   +   AF        I  +  I+  +  Q ++  A S  + + 
Sbjct: 641 DAHDTVEGAPDLKPEHLDVFDCAFKPSGGQRSIPYLGHIKMMAAVQPFLSGAISKTVNMP 700

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            E + + +   Y  +W +GLK     R  S  S   +T +            +    T S
Sbjct: 701 RESTVEDVMGAYLTSWKLGLKAIAIYRDGSKESQPLTTSRETSHNHKEEKGKEQGLDTVS 760

Query: 938 LGIPSS 943
                +
Sbjct: 761 PKDHET 766


>gi|257140761|ref|ZP_05589023.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
          Length = 843

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 142/655 (21%), Positives = 253/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                     +    L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                    + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y + E  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA ERGA+  F  S +                   L     +    D++++ ++ 
Sbjct: 412 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +  +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609


>gi|83717926|ref|YP_440130.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
 gi|83651751|gb|ABC35815.1| ribonucleotide reductase system [Burkholderia thailandensis E264]
          Length = 881

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 142/655 (21%), Positives = 253/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 52  QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 107

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                     +    L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 108 AGRIMSAAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 167

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 168 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 227

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 228 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 276

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                    + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 277 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 333

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V
Sbjct: 334 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 389

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y + E  + A      +   A 
Sbjct: 390 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAY 449

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA ERGA+  F  S +                   L     +    D++++ ++ 
Sbjct: 450 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIREAIRR 490

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 491 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 539

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +  +            +A ++     +   +  Q +ID + S
Sbjct: 540 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 592

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 593 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 647


>gi|238794432|ref|ZP_04638042.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
 gi|238726227|gb|EEQ17771.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           intermedia ATCC 29909]
          Length = 693

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 171/711 (24%), Positives = 292/711 (41%), Gaps = 75/711 (10%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +              +EEG   + + E     
Sbjct: 16  DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLERYDFS 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA     
Sbjct: 63  FIKGLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
               A E    + S  F  +TPT  N G +   +L SCFL  + D++  I  ++     L
Sbjct: 120 NPTLAQELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +
Sbjct: 240 AHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVEQV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YG        + + +A   + ++ + KI A   ++ +  + FE+G+P++ F+D  N  +P
Sbjct: 297 YGVPMSEISISEKYRAMVDDKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTVNRANP 356

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTI 625
               G ++ SNLC+EI   +S  E         +    S NL +    +  D      +I
Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAHTMDSPDFGKSI 414

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S EA++  +
Sbjct: 415 ETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735
                + +HA+ AS +LA ER   +  F  S +  G +    I    + +         +
Sbjct: 475 IYFYTVVYHALRASNQLAIERGKHFKGFDESDYASGTYFTKYIEQRWQPKTAKVQALFAQ 534

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
            A+    +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 535 AAIVLPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEG 594

Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ N+                                 + +  A++I P 
Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGPE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I++ +   + +DQ  SL L+  +  S + ++     AW  G+KT YY+R
Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTASTRDINKAQIYAWKKGIKTIYYIR 674


>gi|304373443|ref|YP_003856652.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis HUB-1]
 gi|304309634|gb|ADM22114.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis HUB-1]
 gi|330723640|gb|AEC46010.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           hyorhinis MCLD]
          Length = 721

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 177/775 (22%), Positives = 311/775 (40%), Gaps = 109/775 (14%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY------FCRYIEEGVKARL 268
            Y  + A+  L    +E      +       H ++  Y ++          IE       
Sbjct: 18  EYITLNAKSKLFLKYKESYKFDQQAADSYIKHHIEPRYRKFNSVRERITWLIENDYYDEK 77

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAM 326
           +       +L  L  +    +     ++G    Y  Y L  N     +E  Q   +  A+
Sbjct: 78  VINEYTFEELEKLTQEAYKYKHHFPSFMGALKFYSSYALKSNDSQEYLEHFQERALLNAL 137

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFG 385
            LA   +E+    +     +    F  +TPT  N+G ++  +  SC+L  + D++  I  
Sbjct: 138 FLAKGNSERASSILR---QIMLGRFQPATPTFLNAGKKNRGEYVSCYLIRIEDNMESISR 194

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+  +  L+K  GG+    + +R +GA I     ++ GVIP +K+  D+    NQ G+R+
Sbjct: 195 AVTTSLQLSKRGGGVSILLSNLREMGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQ 254

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFS  
Sbjct: 255 GAGAVYLNVHHPDILSFLDTKRENADEKIRIKSLSLGVVIPDITFELAKDNKDMALFS-- 312

Query: 506 EVSDLHDLYGKEFEIAYENYE--RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
            V D+   Y K F       E  +  +   IK    I+A  L+  +  + FE+G+P+I F
Sbjct: 313 -VYDVEREYKKAFSDISITQEYYKMLENPNIKKNF-INARKLFTTIAELHFESGYPYILF 370

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHF 611
            D  N R    H   +  SNLC+EI   S+  E               CNLGS+N+    
Sbjct: 371 DDTVNRR--NAHKNRIVMSNLCSEIVQPSTPSEYLPDLTFTKKGEDICCNLGSLNIDKAM 428

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +      +    +  A+  LD+V    +  +    +  N+ + A+GLG M     L   
Sbjct: 429 ESG----KEFGELVYQAIVSLDHVSRTSDLSSAPSIENGNNKNHAVGLGAMNLHGFLATN 484

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
           HI Y S EA++  +     +++HA  +S  LAQ+ GA+  FK S +  G +      +  
Sbjct: 485 HIYYDSKEALDFTNIFFYTMAYHAFKSSSILAQKFGAFEHFKESKFADGSYFDKYTKVSE 544

Query: 731 EV-----------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +             ++  +   ++  W EL + +K +G+ NS+ MA+APT +I+ +   +
Sbjct: 545 KEYQPKTQKIKEVFEKYQVTIPTKQDWIELVENIKRVGIANSHLMAVAPTGSISYLSSCT 604

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            S+ P    +  +         V ++ +N+                             +
Sbjct: 605 PSLQPVVAPVETRKEGKIGRVYVPAYKMNQ-----------------------------E 635

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           ++K     A+E+ P  +I+ A+  QK IDQ+ SL L+L +  + + L+  Y +A+  G  
Sbjct: 636 NMKFYSLGAYELGPDPIIDIAAEAQKHIDQSISLTLFLKDTATTRDLNKAYIRAFKKGCG 695

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           + YY+R R                                 +     +  ECE C
Sbjct: 696 SIYYVRIR-------------------------------QEVLEDSENYDECEAC 719


>gi|167647819|ref|YP_001685482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter sp. K31]
 gi|167350249|gb|ABZ72984.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter sp. K31]
          Length = 744

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 144/658 (21%), Positives = 242/658 (36%), Gaps = 86/658 (13%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
              F   +G         + RVA  +A  E    ++    E  + L+ F F+ +   L  
Sbjct: 15  KYRFAPPDGGGDASVAETWARVAHAIAEAETPKLRKGFQAEVMDALADFKFLPAGRILAG 74

Query: 361 SGTRHP-QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+  V PDDL GIF  ++E A+  +  GG+G D++ +R  GA + G  
Sbjct: 75  AGTARSVTLFNCFVMGVTPDDLGGIFEHVREAAVTLQQGGGVGMDFSSIRPAGARVEGVG 134

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G+R+GA+   L   H D+E F+D ++       R  +
Sbjct: 135 ADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKRTA----NRFRN 190

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM  +  +  W L                                 +V R
Sbjct: 191 FNLSVLVTDPFMAALDADGDWPLSFG-----------------------------GQVQR 221

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++   ++   P + F D  N  +   +   + +SN C E  L        
Sbjct: 222 TVRAADLWAQLMRATYDAAEPGVIFIDRVNAANNLAYCEQILASNPCGEQMLPPY----G 277

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL     N        D D+L +  RTAVR+LDNVIDI+   +E         
Sbjct: 278 ACLLGSLNLARLVDNPFEADAALDEDRLGALARTAVRMLDNVIDISRFPLEAQAVEARAK 337

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +G+G+ G   AL      Y   +AV +    +  I   A  AS  LA E+  +  +  
Sbjct: 338 RRLGIGVTGLADALVFCGARYGDDQAVALTQRWLGVIKREAYRASARLAAEKAPFPLYD- 396

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                                ++          +E +  +   G+RN    +IAPT T +
Sbjct: 397 --------------------PQILDRPNLTSLDEETRALIAAHGLRNGCLTSIAPTGTTS 436

Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            + G  S  I+P +   Y +                  +      E  + D         
Sbjct: 437 LLAGNVSSGIEPVFAYAYTRKVR---------------QPDGSSREEQVEDYALAVWKRL 481

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
           + +  P     +  +A ++ P   +   +  Q  +D + S  +   E  +      IYRQ
Sbjct: 482 HGDAPPPA--AVFVSAQDLTPADHLRMQAAAQALVDSSISKTVNCPETIAFDDFADIYRQ 539

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            + +G K     R  + T    S     +      P     S   +LG  +      +
Sbjct: 540 GYRLGCKGLTTYRPNAITGSVLSVAPTPEPPAPTPPEPSLPSRPDTLGGATYKIKWPD 597


>gi|56964872|ref|YP_176603.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           clausii KSM-K16]
 gi|56911115|dbj|BAD65642.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus clausii
           KSM-K16]
          Length = 698

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 157/718 (21%), Positives = 291/718 (40%), Gaps = 66/718 (9%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +I K+  Y             +E + + +             L  E     IE       
Sbjct: 15  MITKDGGYQFEK--------DKEAVHSYFVDYINQNTVFFHDL-EEKIDYLIENDYYEEE 65

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAM 326
           L       ++  + +    ++     ++     Y+ Y L  N     +E  +    RVA+
Sbjct: 66  LLRLYTIDEIKAVMDIAYNKKFRFPSFMSAFKFYNDYALKTNDKSKILERYED---RVAI 122

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFG 385
                     ++A    N + S  F  +TPT  N+   R  +L SCFL  + D L  I  
Sbjct: 123 VSLFFGNGDVEKAKALVNAMISQEFQPATPTFLNAGRKRRGELVSCFLLEINDSLNDISR 182

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
           A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q G+R+
Sbjct: 183 AVDISMQLSKLGGGVALNLSKLRAKGEAIKDVANATKGVVGVMKLLDNAFRYADQMGQRQ 242

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           G+  AYL  +H D+ +FLD RK + D+  R   ++    IPD F++ + ++    LF P 
Sbjct: 243 GSGAAYLNIFHADINDFLDTRKISADEDVRVKTLSIGVVIPDKFIELMREDKDAYLFYPH 302

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFK 564
            V      YG+ F+        +    + +V + KI+   L++K+  +  E+G+P+I F 
Sbjct: 303 TVY---KAYGQHFDEMDMEEMYETLVDDPRVRKEKINPRRLFQKLAILRSESGYPYIMFA 359

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITL------NSSSEETAVCNLG-SINLLAHFANNQFD 617
           D  N      H+  V  SNLC+EI         +   E     L  S NL +    N  +
Sbjct: 360 DNVNKAHANGHISNVKFSNLCSEILQASEVSTYTDYGEEDEIGLDISCNLGSINIMNVME 419

Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
              L +T+  A   L  V +  N       ++ N   ++IGLG M     L   HI Y S
Sbjct: 420 NKSLENTVSLATDALTRVSESTNITNAPAVRRGNKLMKSIGLGAMNLHGYLAKQHIAYES 479

Query: 677 PEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
            EA + A+     +++ +I  S E+A+++   Y  ++GS +  G +    I      + +
Sbjct: 480 EEARDFANTFFMAMNYFSIKRSAEIARDQGETYHGYEGSTYADGSYFKKYIENDFTPKFD 539

Query: 736 LAMNR------TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                       ++  W  L+  V   G+ +S  +AIAPT +I+ +   + S+ P  + +
Sbjct: 540 KVKALFDGMFVPTKEDWQALQAFVAEHGLYHSYRLAIAPTGSISYVQSATASVMPIMERI 599

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
             ++  +                                     +  +  +    +  A+
Sbjct: 600 EERTYGNSKTYYP-------------------------------MPGLNANNWFFYKEAY 628

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 629 DMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 686


>gi|182435508|ref|YP_001823227.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776145|ref|ZP_08235410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464024|dbj|BAG18544.1| putative vitamin B12-dependent ribonucleotide reductase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656478|gb|EGE41324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces cf. griseus XylebKG-1]
          Length = 965

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/628 (19%), Positives = 223/628 (35%), Gaps = 36/628 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+  V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQVFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E F++ +    +  R   D              +            + ++    
Sbjct: 243 VDHPDIENFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 292

Query: 514 YGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
              EF  A E   +   R  +   V  ++ A +L+RKM    +    P I + D  N   
Sbjct: 293 VNDEFMKAVETGGKFGLRARMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWH 352

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                G ++ SN C+E        +   CNL S+NL+         N  F+ ++ A  + 
Sbjct: 353 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGLGNQSFESERFAKVVE 408

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             +  +D  I       +K  ++    R +G+G     + L      Y S     +A   
Sbjct: 409 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 468

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTS 742
              ++  +   S ELA   G Y  +  +               A+       +  +   +
Sbjct: 469 TSLMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVHVDDLDSPVWAAA 528

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              W ++ +     G RN+    IAPT TI       +  ++P    + + K    G   
Sbjct: 529 TEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQ 588

Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855
           +VN  +   L++     E + + +     +G++ +   +  +  ++   A     I  M 
Sbjct: 589 IVNGTVPQALRRLGYQPEQIEAIVAHIAENGNVVDAPALKTEHYEVFDCAMGERSISAMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R         S
Sbjct: 649 HVRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 708

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                  K       +    T    +  
Sbjct: 709 AKSKDKEKEEVTAKAEETIRTAVEKVVE 736


>gi|145594000|ref|YP_001158297.1| vitamin B12-dependent ribonucleotide reductase [Salinispora tropica
           CNB-440]
 gi|145303337|gb|ABP53919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinispora tropica CNB-440]
          Length = 963

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/603 (20%), Positives = 227/603 (37%), Gaps = 28/603 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 111 GYFATPNDAEIFAHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILD 170

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 171 WYKEEGLIFKGGSGSGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF+  +    D  R   D      +    +  V           
Sbjct: 230 RAAKMVILDVDHPDIEEFVVTKAREEDKVRALRDAGFDMDLGGADIVSVQYQNANNSVRV 289

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G  F++          R +  V   I A +L+R +    +E   P + + 
Sbjct: 290 SDEFMTAVQDGGTFDLR--------GRLDGTVIDTIDAKSLFRTISQAAWECADPGLQYD 341

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
           D  N        G + +SN C+E        + + CNL S+NL+     +  F+ +K   
Sbjct: 342 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMRFLRADGGFEVEKFVR 397

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I       EK  ++   +R +G+G     + L    +PY S +   +A
Sbjct: 398 SVELVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYGSDQGRSLA 457

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                 ++  A   S ELA   GAY  +  +                E++       A+ 
Sbjct: 458 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGAVATAVQ 517

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           R +   W    K     G RNS    +APT TI  +    +  ++P    + + K    G
Sbjct: 518 REATRQWTLGNKVGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 577

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L+     +E + + ++Y    G + +   +  +   +   A     I 
Sbjct: 578 SMQIVNQTVPRALRSLGYPEEQVEAIVEYIAEHGHVVDAPGLRPEHYPVFDCAMGERSIA 637

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R       
Sbjct: 638 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYRDNCKVGQ 697

Query: 912 EKS 914
             S
Sbjct: 698 PLS 700


>gi|300718017|ref|YP_003742820.1| ribonucleoside-diphosphate reductase, alpha subunit [Erwinia
           billingiae Eb661]
 gi|299063853|emb|CAX60973.1| Ribonucleoside-diphosphate reductase, alpha subunit [Erwinia
           billingiae Eb661]
          Length = 702

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 165/673 (24%), Positives = 276/673 (41%), Gaps = 60/673 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     + EG     +  +     +  L       R     +LG    Y  Y L   +G 
Sbjct: 49  ERLQYLVSEGYYEADVLNAYPFEFVSSLFEQAYQRRFRFQTFLGAWKFYTSYTLKTFDGK 108

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           R    + F  RV M            A+     + S  F  +TPT  N G +   +L SC
Sbjct: 109 RY--LEGFTERVCMVALTLAKGDRSLALSLMEEMLSGRFQPATPTFLNCGKQQRGELVSC 166

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 167 FLLRIEDNMESIGRSVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKML 226

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 227 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 286

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550
               N    LFSP    D+  +YG  F     + + +    + ++ R  I+    ++ + 
Sbjct: 287 LAKTNQQMALFSP---YDVERIYGLPFADISISEKYEEMLADDRITRTFINPREFFQTLA 343

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------G 603
            + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   ++  E              
Sbjct: 344 EIQFESGYPYIMFEDTVNRANPI--KGRINMSNLCSEILQVNTPTEYNDDLSYRRIGKDI 401

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    +  D    + T+  AVR L  V D  + H++   ++ N    AIGLG M 
Sbjct: 402 SCNLGSLNIAHTMDSPDFSRTVEIAVRGLTAVSDQSHIHSVPSIERGNAQSHAIGLGQMN 461

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y S  A++  +     I++HA+  S  +AQER   ++ F+ S +  G +
Sbjct: 462 LHGYLAREGIQYGSEVALDFTNLYFYTITYHALRTSNLMAQERGERFAGFEESRYASGEY 521

Query: 722 PIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
               +    + R        +R          W EL++ V   G+ N N  AI PT +I+
Sbjct: 522 FAQYVEQRWQPRTPEVAALFARAGITLPGQKEWRELREAVMKHGIYNQNLQAIPPTGSIS 581

Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++    +G       F+ N+                       
Sbjct: 582 YINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMNND----------------------- 618

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                    +  +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     
Sbjct: 619 --------NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINKAQIY 670

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 671 AWKKGIKTLYYIR 683


>gi|167616835|ref|ZP_02385466.1| ribonucleotide reductase system [Burkholderia thailandensis Bt4]
          Length = 843

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 142/655 (21%), Positives = 252/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                    + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y + E  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA ERGA+  F  S +                   L     +    D++++ ++ 
Sbjct: 412 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +  +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609


>gi|213052491|ref|ZP_03345369.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424575|ref|ZP_03357364.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213650064|ref|ZP_03380117.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213864814|ref|ZP_03386933.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289824436|ref|ZP_06544025.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 705

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 171/697 (24%), Positives = 290/697 (41%), Gaps = 63/697 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           + +   +    +    +    + E     + EG     +        +  L         
Sbjct: 30  QAIDAFFAAHVRPHSVKFASQH-ERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGF 88

Query: 291 FAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               +LG    Y  Y L   +G R  E  +     VA+ LA  +   E  A +  + + S
Sbjct: 89  RFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLS 145

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + +
Sbjct: 146 GRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 205

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 206 REAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 265

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F     +   
Sbjct: 266 ENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERY 322

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                +  V +  I+A   ++ +  + FE+G+ +I F+D  N  +P    G ++ SNLC+
Sbjct: 323 DELIADPHVRKTYINARDFFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCS 380

Query: 587 EITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI   +S+           + +  S NL +    +  D   +  T+ TA+R L  V D+ 
Sbjct: 381 EILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMS 440

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++      N    AIGLG M     L    I Y SPEA++  +     I++HA+  S
Sbjct: 441 HIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTS 500

Query: 699 VELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDEL 749
           + LA+ER   ++ F  S +  G +       D     A+VR   A   +   +R  W +L
Sbjct: 501 MRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKL 560

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 561 RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN 620

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                          +   ++  A++I P  +I++ +   + +D
Sbjct: 621 -------------------------------ENLDMYQDAYDIGPEKIIDTYAEATRHVD 649

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 650 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 686


>gi|149365456|ref|ZP_01887491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CA88-4125]
 gi|218929726|ref|YP_002347601.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           CO92]
 gi|115348337|emb|CAL21270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CO92]
 gi|149291869|gb|EDM41943.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis
           CA88-4125]
          Length = 693

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 164/674 (24%), Positives = 279/674 (41%), Gaps = 62/674 (9%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     IEEG   + + +      +  L      ++     +LG    Y  Y L   +G 
Sbjct: 40  EKIDYLIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGK 99

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M      T  +  A E    + S  F  +TPT  N G +   +L S
Sbjct: 100 RYLERYED---RVCMVALTLATGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVS 156

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+
Sbjct: 157 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKM 216

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 217 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITF 276

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKM 549
           +    N    LFSP    D+  +YG        + + +      ++ + KI A   ++ +
Sbjct: 277 ELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQIL 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602
             + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   ++  E             
Sbjct: 334 AEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRRIGKD 391

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +       D      +I  A+R L  V ++ N  ++   +K N    AIGLG M
Sbjct: 392 ISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQM 451

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720
                L    + Y S EA++  +     +++HAI AS +LA ER   +  F  S +  G 
Sbjct: 452 NLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGA 511

Query: 721 FPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           F    I    + +         +  +   ++  W  L++ V   G+ N N  A+ PT +I
Sbjct: 512 FFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSI 571

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G       ++ N+                      
Sbjct: 572 SYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND---------------------- 609

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890
                      + +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++    
Sbjct: 610 ---------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQI 660

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 661 YAWKKGIKTIYYIR 674


>gi|256963239|ref|ZP_05567410.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|307272282|ref|ZP_07553542.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0855]
 gi|312952107|ref|ZP_07770988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0102]
 gi|256953735|gb|EEU70367.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|306511171|gb|EFM80181.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0855]
 gi|310629889|gb|EFQ13172.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0102]
 gi|315153941|gb|EFT97957.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0031]
          Length = 719

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K  RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKNGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|297191628|ref|ZP_06909026.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719369|gb|EDY63277.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 964

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 124/628 (19%), Positives = 230/628 (36%), Gaps = 36/628 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E F++ +    +  R   D              +            + ++    
Sbjct: 243 VDHPDIENFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 292

Query: 514 YGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
              EF  A E+  +   R  +   V  ++ A +L+RKM    +    P I + D  N   
Sbjct: 293 VNDEFMKAVESGGKFGLRARMTGDVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWH 352

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                G ++ SN C+E        +   CNL S+NL+         N  FD ++    + 
Sbjct: 353 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFDVERFTKVVE 408

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             +  +D  I       +K  ++   +R +G+G     + L      Y S     +A   
Sbjct: 409 LVITAMDISICFADFPTQKIGENTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 468

Query: 687 MEFISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTS 742
              ++  +   S ELA   G Y  +  +     + +        +A   D+L   +   +
Sbjct: 469 TSLMTGTSYKRSAELAAVVGPYDGYARNAEPHKRVMKQHADANTVAVRMDDLDSPIWAAA 528

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              W ++ +  +  G RN+    IAPT TI       +  ++P    + + K    G   
Sbjct: 529 TEAWQDVIRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQ 588

Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855
           +VN  +   L++     E + + +      G++ +   +  +  ++   A     I  M 
Sbjct: 589 IVNGTVPQALRRLGYQPEQIEAIVAHIADHGNVIDAPGLKTEHYEVFDCAMGERSISAMG 648

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q WI  A S  + L E  + + ++ +Y +AW MG+K     R         S
Sbjct: 649 HVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 708

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             K    K      T+         +  
Sbjct: 709 AKKKEKEKAEVTQKTEETIRAAVEKVVE 736


>gi|16761589|ref|NP_457206.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143069|ref|NP_806411.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|25328484|pir||AG0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503890|emb|CAD05918.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138702|gb|AAO70271.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 714

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 171/697 (24%), Positives = 290/697 (41%), Gaps = 63/697 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           + +   +    +    +    + E     + EG     +        +  L         
Sbjct: 39  QAIDAFFAAHVRPHSVKFASQH-ERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGF 97

Query: 291 FAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               +LG    Y  Y L   +G R  E  +     VA+ LA  +   E  A +  + + S
Sbjct: 98  RFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLS 154

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  GG+    + +
Sbjct: 155 GRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 214

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++
Sbjct: 215 REAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 274

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +NA   LFSP    D+   YGK F     +   
Sbjct: 275 ENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERY 331

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                +  V +  I+A   ++ +  + FE+G+ +I F+D  N  +P    G ++ SNLC+
Sbjct: 332 DELIADPHVRKTYINARDFFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCS 389

Query: 587 EITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI   +S+           + +  S NL +    +  D   +  T+ TA+R L  V D+ 
Sbjct: 390 EILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMS 449

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++      N    AIGLG M     L    I Y SPEA++  +     I++HA+  S
Sbjct: 450 HIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTS 509

Query: 699 VELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDEL 749
           + LA+ER   ++ F  S +  G +       D     A+VR   A   +   +R  W +L
Sbjct: 510 MRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKL 569

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 570 RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN 629

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                          +   ++  A++I P  +I++ +   + +D
Sbjct: 630 -------------------------------ENLDMYQDAYDIGPEKIIDTYAEATRHVD 658

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 659 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 695


>gi|124262925|ref|YP_001023395.1| putative ribonucleotide reductase protein [Methylibium
           petroleiphilum PM1]
 gi|124262171|gb|ABM97160.1| putative ribonucleotide reductase protein [Methylibium
           petroleiphilum PM1]
          Length = 862

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 144/666 (21%), Positives = 254/666 (38%), Gaps = 70/666 (10%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCST 355
           +  L ++Y      + +E+    F RV+ G+A  E    +E     F++ + +       
Sbjct: 18  VDTLLEKYAKGDEQTAVEI----FARVSKGIAQAEKPELREHFEKVFFDNMQAGAIGAGR 73

Query: 356 PTLFNSGTRHPQLSSCFLTTV--------PDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
                       L++CF+  V         D   GI+ AL + A   +  GG+G D++ +
Sbjct: 74  IMSAGGSEIRATLANCFVQPVGDAVMGQDDDGYPGIYVALLQAAETMRRGGGVGYDFSRI 133

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + GT+  + G   ++ V + +   V   G R+GA    L   H DV EF+  ++
Sbjct: 134 RPKGAFVKGTHSSASGPCSYMDVFDKSCKTVESAGSRRGAQMGVLRIDHPDVMEFITAKR 193

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               +  R ++ N +  I + FM+ V     W L    E        G     AY     
Sbjct: 194 ----EEGRWNNFNVSVGIVEGFMEAVVAGGDWELVHKAEPGKEQKDAG-----AYR---- 240

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 + V+ K+ A  ++  ++   ++   P I F D  N  +  ++   + ++N C E
Sbjct: 241 --RADGLWVYSKVPAKQIFDTIMRSTYDFAEPGILFIDNMNKDNNLRYCERIEATNPCAE 298

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHT 642
             L         C+LG + L     +       FD++   + +   VR LDNV+D+    
Sbjct: 299 EPLPPY----GCCDLGPVILPRFVRDPFTPAARFDFEAYRAAVAVQVRFLDNVLDVTHWP 354

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +E+ ++ +   R IG+G  G    L +L + Y S E    A E    +   A  ASV+LA
Sbjct: 355 LEQQEQESRNKRRIGVGYTGLGDTLIMLGLRYNSDEGRAKAVEITREMRDAAYLASVDLA 414

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E+G +  F    +                   L     +    + +K  ++  G+RNS+
Sbjct: 415 KEKGRFPLFNAEKY-------------------LEEGTFASRLPEHIKAAIREHGIRNSH 455

Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLY--VKSNMSG--DFTVVNSFLVNELKQ---R 813
            +AIAPT T++       S  I+P++   Y   K    G   F  V         +    
Sbjct: 456 LLAIAPTGTVSLAFADNASGGIEPAFSLAYNRKKRTKDGGHTFYAVKDHAFRVFSETVCE 515

Query: 814 DLWDEAMISDLKYHDGSI---GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               + +I  +  +  S    G   ++ D L     TA ++     ++     Q +ID +
Sbjct: 516 PALRDGLIDAVCNYKDSFVVGGQTYQVKDVLPASFVTALDMTAAEHLQMMKDVQPYIDTS 575

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  + +  +        +Y  AW  GLK     R  +      S          A P  
Sbjct: 576 ISKTVNVPADYPYDDFKGLYLAAWQAGLKGLSTYRPNATLGSVLSVGAPAPAPAAAAPAV 635

Query: 930 DPNSST 935
            P+   
Sbjct: 636 TPDDDP 641


>gi|162420596|ref|YP_001607866.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis
           Angola]
 gi|162353411|gb|ABX87359.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia
           pestis Angola]
          Length = 716

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 171/738 (23%), Positives = 302/738 (40%), Gaps = 79/738 (10%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S+S+L+   + +   L + +     +  ++ AR    +   +     +   +K  +    
Sbjct: 12  SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKIDY---- 67

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
                     IEEG   + + +      +  L      ++     +LG    Y  Y L  
Sbjct: 68  ---------LIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKT 118

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +     VA+ LA   T  +  A E    + S  F  +TPT  N G +   
Sbjct: 119 FDGKRYLERYEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRG 175

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP
Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 235

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 295

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545
           D+  +    N    LFSP    D+  +YG        + + +      ++ + KI A   
Sbjct: 296 DITFELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREF 352

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--- 602
           ++ +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   ++  E         
Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRR 410

Query: 603 ----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
                S NL +       D      +I  A+R L  V ++ N  ++   +K N    AIG
Sbjct: 411 IGKDISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVTSIEKGNQESHAIG 470

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    + Y S EA++  +     +++HAI AS +LA ER   +  F  S +
Sbjct: 471 LGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDY 530

Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G F    I    + +         +  +   ++  W  L++ V   G+ N N  A+ P
Sbjct: 531 ASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPP 590

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ I   + SI P    + ++     G       ++ N+                  
Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                          + +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 679

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 680 KAQIYAWKKGIKTIYYIR 697


>gi|153010277|ref|YP_001371491.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562165|gb|ABS15662.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum
           anthropi ATCC 49188]
          Length = 739

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 175/737 (23%), Positives = 295/737 (40%), Gaps = 85/737 (11%)

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           L+   + +   L + E        +  L++ R+       +   + T      L  +   
Sbjct: 39  LDYHALNAMLNLYDDE-------GKIQLDRDRQAARQYFLQHVNQNTVF-FHNLREKIDY 90

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI- 314
              E   +  +L +   +F          Y + F F  +LG    Y  Y L   +G R  
Sbjct: 91  LVTEGYYEQEVLDQYSFNFVRDLFDEA--YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYL 148

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E  +    RV M         E+ A      + +  +  +TPT  N+G +   +L SCFL
Sbjct: 149 ERYED---RVCMVALTLARGNEQLARNLMEEIIAGRYQPATPTFLNAGKKQRGELVSCFL 205

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K+  D
Sbjct: 206 LRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPVMKLLED 265

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 266 SFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 325

Query: 494 TQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
             N    LFSP +V  ++   L        Y      A   +    +KI+A   ++ +  
Sbjct: 326 KNNEDMYLFSPYDVERVYGVPLTEISITEKYRELVDDARITK----KKINAREFFQVLAE 381

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAV 599
           + FE+G+P+I F+D  N  +P    G +  SNLC+EI                   +   
Sbjct: 382 IQFESGYPYIMFEDTVNRANPI--DGRITMSNLCSEILQVSEASIFGEDLSYDHLGKDIS 439

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+ +       D      TI T++R L  V D+    ++    + N    AIGL
Sbjct: 440 CNLGSLNIASA-----MDSSDFGKTIETSIRALTAVSDMSQIGSVPSVARGNDESHAIGL 494

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
           G M     L    I Y S E V+  +     +++HAI AS  +A E   ++  F+ S + 
Sbjct: 495 GQMNLHGYLARERIYYGSEEGVDFTNIYFYTVTYHAIRASNLIAVETGKSFKGFEKSKYA 554

Query: 718 QGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +       L E          ++  +   ++  W +LK  V   G+ N N  A+ PT
Sbjct: 555 TGEYFAKYTEQLWEPATQKVREIFEKAGIAIPTQDDWRDLKNAVMEGGLYNQNLQAVPPT 614

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G      +F+ N+                   
Sbjct: 615 GSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMTND------------------- 655

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                           +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++ 
Sbjct: 656 ------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINR 703

Query: 888 IYRQAWLMGLKTTYYLR 904
               AW  G+KT YY+R
Sbjct: 704 AQIYAWKKGIKTIYYIR 720


>gi|333024021|ref|ZP_08452085.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Streptomyces sp. Tu6071]
 gi|332743873|gb|EGJ74314.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Streptomyces sp. Tu6071]
          Length = 921

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 130/668 (19%), Positives = 241/668 (36%), Gaps = 42/668 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L D   +       E  Q F             + E    E    L    F  
Sbjct: 53  RETGLKQLID-RIVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSF 102

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R    
Sbjct: 103 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 162

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +
Sbjct: 163 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEE 221

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +                 + +    ++D +    E A +   R    
Sbjct: 222 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 275

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E    
Sbjct: 276 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 332

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +   CNL S+NL+         N  F+ ++ A  +   +  +D  I       EK 
Sbjct: 333 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKI 389

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R +G+G     + L      Y S     +A      ++  A   S ELA   G
Sbjct: 390 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVG 449

Query: 707 AYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            Y  +  +                  +     +  +   +   W ++ +  +  G RN+ 
Sbjct: 450 PYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQ 509

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              +APT TI       +  ++P    + + K    G   +VN  +   L++    +E +
Sbjct: 510 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 569

Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875
            + +     +G++ +   +  +  ++   A     I PM  +   +  Q WI  A S  +
Sbjct: 570 EAIVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 629

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            + E  + ++++ IY +AW +G+K     R         S  K  + K      ++    
Sbjct: 630 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKAEITEKSEETIR 689

Query: 935 THSLGIPS 942
                +  
Sbjct: 690 AAVEKVVE 697


>gi|318059580|ref|ZP_07978303.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp.
           SA3_actG]
 gi|318075430|ref|ZP_07982762.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp.
           SA3_actF]
          Length = 959

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 130/668 (19%), Positives = 242/668 (36%), Gaps = 42/668 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L D   +       E  Q F             + E    E    L    F  
Sbjct: 91  RETGLKQLID-RIVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSF 140

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R    
Sbjct: 141 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 200

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +
Sbjct: 201 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEE 259

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +                 + +    ++D +    E A +   R    
Sbjct: 260 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 313

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E    
Sbjct: 314 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 370

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +   CNL S+NL+         N  F+ ++ A  +   +  +D  I       EK 
Sbjct: 371 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKI 427

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R +G+G     + L      Y S     +A      ++  A   S ELA   G
Sbjct: 428 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVG 487

Query: 707 AYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            Y  +  +                  +     +  +   +   W ++ +  +  G RN+ 
Sbjct: 488 PYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQ 547

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              +APT TI       +  ++P    + + K    G   +VN  +   L++    +E +
Sbjct: 548 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 607

Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875
            + +     +G++ +   +  +  ++   A     I PM  +   +  Q WI  A S  +
Sbjct: 608 EAIVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 667

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            + E  + ++++ IY +AW +G+K     R         S  K  + K+     ++    
Sbjct: 668 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKVEITEKSEETIR 727

Query: 935 THSLGIPS 942
                +  
Sbjct: 728 AAVEKVVE 735


>gi|302522306|ref|ZP_07274648.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB78]
 gi|302431201|gb|EFL03017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB78]
          Length = 965

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 130/668 (19%), Positives = 241/668 (36%), Gaps = 42/668 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L D   +       E  Q F             + E    E    L    F  
Sbjct: 97  RETGLKQLID-RIVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSF 146

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R    
Sbjct: 147 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 206

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +
Sbjct: 207 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEE 265

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +                 + +    ++D +    E A +   R    
Sbjct: 266 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 319

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E    
Sbjct: 320 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 376

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +   CNL S+NL+         N  F+ ++ A  +   +  +D  I       EK 
Sbjct: 377 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKI 433

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R +G+G     + L      Y S     +A      ++  A   S ELA   G
Sbjct: 434 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVG 493

Query: 707 AYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            Y  +  +                  +     +  +   +   W ++ +  +  G RN+ 
Sbjct: 494 PYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQ 553

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              +APT TI       +  ++P    + + K    G   +VN  +   L++    +E +
Sbjct: 554 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 613

Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875
            + +     +G++ +   +  +  ++   A     I PM  +   +  Q WI  A S  +
Sbjct: 614 EAIVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 673

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            + E  + ++++ IY +AW +G+K     R         S  K  + K      ++    
Sbjct: 674 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKAEITEKSEETIR 733

Query: 935 THSLGIPS 942
                +  
Sbjct: 734 AAVEKVVE 741


>gi|240849860|ref|YP_002971248.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella
           grahamii as4aup]
 gi|240266983|gb|ACS50571.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella
           grahamii as4aup]
          Length = 716

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 175/694 (25%), Positives = 288/694 (41%), Gaps = 76/694 (10%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  ++     + + + +D  ++    K    F F    +LG 
Sbjct: 48  LQHVNQNTVFFHNLKEKIDYLIEEGYYEKVLFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +    RV +         +  A  F + + +  F  +TP
Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGNKALAESFVDEIITGRFQPATP 164

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I 
Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIK 224

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GV+P +K+  D+    NQ G R+GA   YL   H+D+ +FLD ++   D++ R
Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFS     D+  + GK F         ++     K
Sbjct: 285 IKTLSLGVVIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAK 341

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  +KISA   ++ +  + FE+G+P+I F+D  N        G +  SNLC+EI   S +
Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTANR--SNPIAGRISMSNLCSEILQVSEA 399

Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            E               CNLGS+N+     +          T+ +AVR L  V D+ N  
Sbjct: 400 SELETDLTYRTIGSDISCNLGSMNIAKAMESP-----DFGQTVESAVRALTAVSDMSNIA 454

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +    K N    AIGLG M     L    I Y SPEA++  +     +++HAI AS  +
Sbjct: 455 CVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRASNLI 514

Query: 702 AQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752
           A+E +  +S F+ S +  G F    I    + +  L     +R          W ELKK 
Sbjct: 515 ARERQEMFSGFEKSAYADGRFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKL 574

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811
           V   G+ N N  A+ PT +I+ I   + SI P    + ++     G       ++ N   
Sbjct: 575 VIEYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 632

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            +  A+EI P  +I++ +   + +DQ  
Sbjct: 633 -----------------------------NLNFYQDAYEIGPEKIIDTYAAATQHVDQGL 663

Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 664 SLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVR 697


>gi|218709885|ref|YP_002417506.1| ribonucleotide reductase r1 chain [Vibrio splendidus LGP32]
 gi|218322904|emb|CAV19081.1| ribonucleotide reductase R1 chain [Vibrio splendidus LGP32]
          Length = 710

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 177/714 (24%), Positives = 295/714 (41%), Gaps = 83/714 (11%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDL 278
            AR    +   +     +   +K  +   +  Y  +   +Y    +     +     F  
Sbjct: 36  AARQFFLQHVNQNTVFFHNLDEKIDYLLREGYYEAQVIEQYDRSFLHQIWANAYQAKFRF 95

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
                  K+     F    L+              +E  +    RV M   L      + 
Sbjct: 96  RTFLGAYKF-----FTSYALKT-------RDGKRYLERFED---RVVMTALLLARGDCEF 140

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A+     +    F  +TPT  NSG +   +L SCFL  + D++  I  A+  +  L++  
Sbjct: 141 ALALMEEIIHQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRG 200

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    T +R  GA I G   +S GV+P +K+  D+    NQ G R+GA   YL   H 
Sbjct: 201 GGVALLLTNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHP 260

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ +FLD ++   D++ R   ++    IPD+ ++   QN    LFSP +V     +YG  
Sbjct: 261 DIMQFLDTKRENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDV---ERVYGVP 317

Query: 518 FEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F       +      + ++ + K+SA  L++ +  + FE+G+P+I F+D  N  +P Q  
Sbjct: 318 FSEISVTEKYHEMVDDPRIRKGKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ-- 375

Query: 577 GVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           G V+ SNLC+EI               S       CNLGS+N+         D  +L+ T
Sbjct: 376 GRVNMSNLCSEILQVNEASNYDDDLNYSHVGRDISCNLGSVNIAKA-----LDGGQLSQT 430

Query: 625 IRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           + TA+R L+ V +++  +++   +K N    AIGLG M     L    I Y SPEA++  
Sbjct: 431 VDTAIRALNAVSEMSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFT 490

Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
                 + +H + AS +LAQE+   +  F+ S +  G F    +      + ++  +  S
Sbjct: 491 SSYFACVLYHCLVASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFS 550

Query: 743 RLP--------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           RL         W ELK+ V + G+ N    AI PT +I+ I   + SI P    + ++  
Sbjct: 551 RLDIRIPTVSEWSELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKE 610

Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G       +L N                                  +    AF I P
Sbjct: 611 GKIGRVYFPAPYLNN-------------------------------SNLEYFRDAFSIGP 639

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +I+  +   + +DQ  SL L+ D+  + + ++     AW   +KT YY+R R
Sbjct: 640 KAIIDVYAAATEHVDQGLSLTLFFDDEVTTRGINKAQIYAWKKKIKTLYYIRMR 693


>gi|251788643|ref|YP_003003364.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya zeae
           Ech1591]
 gi|247537264|gb|ACT05885.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae
           Ech1591]
          Length = 715

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 176/681 (25%), Positives = 281/681 (41%), Gaps = 72/681 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
           E      +EG     + E    DF +      +++ R     +LG    Y  Y L     
Sbjct: 62  EKLRWLQQEGYYEPEVLERYQSDFIIDVFQRAVEH-RSPFQSFLGAFKFYTSYALKSFDG 120

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
              +      RV M          + A +  + + S  F  +TPT  N G R   +L SC
Sbjct: 121 SQYLENYG-ERVCMVALTLARGDAQLAQQLVDEMMSGRFQPATPTFLNCGKRQRGELVSC 179

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    T +R  GA I     +S GVIP +K+ 
Sbjct: 180 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIMKML 239

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD R+   D++ R   ++    IPD+ + 
Sbjct: 240 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITLH 299

Query: 492 RVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
               N    LFSP +V  ++   L        Y   +   +  EI+    I+A   ++ +
Sbjct: 300 LARNNQDMHLFSPYDVERIYGMPLSEISVSEKY---DELVNHPEIRKC-AINARQFFQTL 355

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597
             + FE+G+P++ F+D  N  +P    G +  SNLC+EI   S + E             
Sbjct: 356 AELQFESGYPYLMFEDTVNGNNPV--AGRITMSNLCSEILQVSRASEYQEDLSYRLVGKD 413

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D   LA ++  AVR L  V D+ + + +      N    AI
Sbjct: 414 ISCNLGSLNIAKV-----MDGGNLAHSVAIAVRALTAVSDMSHINAVPSIAAGNAESHAI 468

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L    I Y S EA++  +     +++HA+  S  LAQE    ++ F  S 
Sbjct: 469 GLGQMNLHGYLAREGILYGSEEALDFTNLYFYTVTYHALLTSSLLAQERNQTFAGFADSQ 528

Query: 716 WDQGVFP-----IDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIA 767
           +  GVF       +       VR+   +   +   R  W  LK+RV   G+ N N  A+ 
Sbjct: 529 YASGVFFDRYLSQEWQPATERVRELFMVAGIALPLREDWLALKRRVMRYGLYNQNLQAVP 588

Query: 768 PTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N+                 
Sbjct: 589 PTGSISYINHATASIHPIVSRIEIRKEGRLGRVYYPAPYMTND----------------- 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                          ++ +  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 632 --------------NQRFYQDAYEIGPEKIIDTYAIATRHVDQGLSLTLFFPDTATTRDI 677

Query: 886 DFIYRQAWLMGLKTTYYLRSR 906
           +     AW  G+KT YY+R R
Sbjct: 678 NKAQIYAWKKGIKTLYYIRVR 698


>gi|149369594|ref|ZP_01889446.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified
           eubacterium SCB49]
 gi|149357021|gb|EDM45576.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified
           eubacterium SCB49]
          Length = 596

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 158/625 (25%), Positives = 249/625 (39%), Gaps = 119/625 (19%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            P+     VA             A +FY  +S   +  ++P   N G +     SCF + 
Sbjct: 62  SPEQRIREVAERAEEILGMP-GYADKFYGYMSEGFYSLASPVWSNFGKKRGLPISCFGSH 120

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + DD+  I     E  M++K  GG    +  +R  GA I   NG++ G +  +++     
Sbjct: 121 IDDDIGNILYTQSEVGMMSKLGGGTSGFFGKIRPRGAAI-TNNGEASGAVHIMRLFESMV 179

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+QG  R+G    YL   H D++EFL++      +     ++     + + +M+ +  
Sbjct: 180 DVVSQGSVRRGRFSPYLPIDHADIKEFLEIG----SEGNPIQELTHGVTVTNEWMEEMIA 235

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
                                                     R I     W K+L    E
Sbjct: 236 GDE-------------------------------------EKRTI-----WAKVLQSRGE 253

Query: 556 TGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            G+P++ F D  N       Q     +H+SNLCTEI L S    + VC L SIN+L    
Sbjct: 254 MGYPYVFFTDNANNGAADVYQDKNHKIHASNLCTEIMLPSDHNWSFVCVLSSINVL---- 309

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS------------------NHTHR 654
              +D  K    + T V  LD VI      +E  K S                     +R
Sbjct: 310 --HYDKWKDTDAVETMVYFLDAVITEFLEKLESYKNSEDREDRQTFLFMERAYNFAKENR 367

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
           A+GLG++G+ S L      + S EA  +  E  + I   +  AS ELA+  G     KG 
Sbjct: 368 ALGLGVLGWHSLLQSKKHAFNSQEAFNLNSEIFKIIKDKSYKASEELAKAFGEPEVLKG- 426

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                                                     G RN+   A+APT + A 
Sbjct: 427 -----------------------------------------YGRRNATLNAVAPTTSSAF 445

Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I G VSQ I+P + N+YVK       T+ N FLV  L+++ +    +  D++  DGS+ +
Sbjct: 446 ILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLVELLQEKGMDTREVWLDIRDKDGSVQH 505

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892
           ++ + ++ K +  T  EID M +I  A+ RQ  IDQ QS+N+ +  +   K+++ ++  A
Sbjct: 506 LDFLTENEKDVFKTYSEIDQMDIIYQAANRQNHIDQGQSVNIIVHPDMPTKEVNKLHITA 565

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLK 917
           W +GLK+ YY  S +A    K    
Sbjct: 566 WKLGLKSLYYQHSMNAAQKFKQKKD 590


>gi|227548645|ref|ZP_03978694.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079259|gb|EEI17222.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 721

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 167/726 (23%), Positives = 295/726 (40%), Gaps = 89/726 (12%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG---------VKARLLHESMMD 275
           L+      L  +Y +  +    + +    +YF +++ +              L+  +  +
Sbjct: 20  LDYHALNALLNLYDENGEIQFEKDREAANQYFIQHVNQNTVFFHDLEEKIDYLVKNNYYE 79

Query: 276 ------FDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRV 324
                 +D  ++ +  K    + F +      Y  Y        +G R  E  +    RV
Sbjct: 80  PEVIDAYDWQFVKDTFKRAYSYKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFED---RV 136

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGI 383
           +M      +  E+ A    + + +  F  +TPT  N+G     +L SCFL  + D++  I
Sbjct: 137 SMTALFLASGNEETASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESI 196

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+  +  L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G 
Sbjct: 197 GRAINSSLQLSKRGGGVALLLSNIREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGA 256

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFS
Sbjct: 257 RQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNDDMYLFS 316

Query: 504 PDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           P    D+  +YG  F      E YE   +   I+  + I+A   ++ +  + FE+G+P+I
Sbjct: 317 P---YDVERVYGLPFADISVTEKYEEMVEDPRIRKTK-INARHFFQTIAEIQFESGYPYI 372

Query: 562 TFKD-----------PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
            F+D             N+ +    +  V+S ++  E    +       CNLGS+N+   
Sbjct: 373 MFEDTANRANPVKTGRINMSNLCSEILQVNSPSVLNEDLSYAEVGHDISCNLGSLNIAKT 432

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D D  + T+ TA+R L  V D  +  ++   +  N+   AIGLG M     L  
Sbjct: 433 M-----DSDNFSRTVETAIRGLTAVADKTSIESVPPVRDGNNASHAIGLGQMNLHGYLGR 487

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PI 723
            HI Y S E ++  +     + + AI AS  +A E+   ++ F  S +  G F     P 
Sbjct: 488 EHIEYGSEEGLDFTNAYFAAVMYEAIKASHAIAVEKGERFADFDKSEYATGEFFDRYDPA 547

Query: 724 DSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           D      +V++  A   +   +   W +LK  V   G+ N    A+ PT +I+ I   + 
Sbjct: 548 DFQPKTDKVKELFARSSVAVPTAQQWAQLKADVARDGIYNRYLQAVPPTGSISYINNSTS 607

Query: 781 SIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           SI P    + ++     G        + N                               
Sbjct: 608 SIHPIASKIEIRKEGKIGRVYYPAPHMDN------------------------------- 636

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           +       A+EI    +I++ +   K++DQ  SL L+  +  + + ++     AW  G+K
Sbjct: 637 ENLSYFKDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTITTRDINRAQIYAWRKGIK 696

Query: 899 TTYYLR 904
           + YY+R
Sbjct: 697 SLYYIR 702


>gi|49473849|ref|YP_031891.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           quintana str. Toulouse]
 gi|49239352|emb|CAF25685.1| Ribonucleotide reductase alpha-chain [Bartonella quintana str.
           Toulouse]
          Length = 716

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 176/694 (25%), Positives = 292/694 (42%), Gaps = 76/694 (10%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  ++     +++ + +D  ++    K    F F    +LG 
Sbjct: 48  LQHVNQNTVFFHNLKEKIDYLIEEGYYEKTLFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +     VA+ LA      +  A  F + + +  F  +TP
Sbjct: 108 FKYYTSYTLKTFDGKRYLERYEDRICLVALYLAQG---NKSLAESFVDEIITGRFQPATP 164

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  + D++  I  ++     L+K  GG+    T +R  GA I 
Sbjct: 165 TFLNAGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIK 224

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GV+P +K+  D+    NQ G R+GA   YL   H+D+ +FLD ++   D++ R
Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFSP    D+  + GK F         ++     K
Sbjct: 285 IKTLSLGVVIPDITFELAQNNEDMYLFSP---YDIERVTGKPFSDISLTEHYRSFVDNAK 341

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  +KI+A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   S +
Sbjct: 342 IRKKKINARVFFQTLAEIQFESGYPYILFEDTANRANPI--AGRISMSNLCSEILQVSEA 399

Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            E               CNLGS+N+     +          T+  AVR L  V D+ N  
Sbjct: 400 SELETDLTYRTIGSDISCNLGSMNIAKAMESTN-----FGRTVEIAVRALTAVSDMSNIA 454

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +    K N    AIGLG M     L    I Y S EA++  +     +++HAI AS  +
Sbjct: 455 CVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSLEAIDFTNIYFYTVAYHAIRASNLI 514

Query: 702 AQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752
           A+ER   ++ F+ S +  G F    I    + +  L     +R          W ELKK 
Sbjct: 515 ARERQKVFAGFEKSAYADGSFFTKYIEKEWKPQCVLVQELFARNNIVIPDQKDWQELKKL 574

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811
           V   G+ N N  A+ PT +I+ I   + SI P    + ++     G       ++ N   
Sbjct: 575 VIEYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 632

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            +  A+EI P  +I++ +   + +DQ  
Sbjct: 633 -----------------------------NLNFYQDAYEIGPEKIIDTYAVATQHVDQGL 663

Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 664 SLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVR 697


>gi|241764581|ref|ZP_04762598.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax delafieldii 2AN]
 gi|241365984|gb|EER60605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidovorax delafieldii 2AN]
          Length = 829

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 139/645 (21%), Positives = 243/645 (37%), Gaps = 87/645 (13%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK-EKRAVEFYNLLSSFHFMC 353
            + L +L ++Y      +     +  + RVA  LA  E  K  ++  E +        + 
Sbjct: 33  PISLDVLREKYLKPGETNV----EDLYRRVAHALASVEAPKLRQKYEELFLANLHAGAIG 88

Query: 354 STPTLFNSGTRHP-QLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
           +   +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG+G D+
Sbjct: 89  AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDEGFPGIYEALREAAETMRRGGGVGYDF 148

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +  T   + G   ++ V + +   V   G R+GA    L   H DV+EF+ 
Sbjct: 149 SRIRPKGAQVKATASVASGPCSYMNVFDQSCSTVESAGARRGAQMGVLRIDHPDVQEFIT 208

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  + D F++ V  +  W L             G         
Sbjct: 209 AKRTPG----RWNNFNVSVGVSDAFIEAVQHDRPWELVHRARPGTAAMAQG--------- 255

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V+  + A ALW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 256 --AHQRADGQWVYATVQARALWDIIMKSAYDFAEPGILFLDHINEDNNLNYCEAIAATNP 313

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637
           C E  L S       C+LG + L     +         FD++     +   VR LDNV+D
Sbjct: 314 CGEQPLPSY----GCCDLGPVILTRFVRHPFGFDGLPSFDFEAFEKVVALQVRALDNVLD 369

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +    + + +      R IG+G  G  + L +L + Y   E   +A    E +   A  A
Sbjct: 370 VTFWPLPQQRDEAMAKRRIGVGFTGMGNTLAMLCLRYDMQEGRAMAARIAEAMRDAAYRA 429

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           SVELA+E+GA+  F+   +                   LA    +    + +K+ ++  G
Sbjct: 430 SVELAREKGAFPKFEAEPY-------------------LAAGTFASRLPESIKEAIRANG 470

Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM----SGDFTVVNSFLVNELK 811
           +RNS+ ++IAPT T++       S  I+P +  +Y +       S     V        +
Sbjct: 471 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWMYKRKKREADGSTSEYSVEDHAWRLYR 530

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           +                G +  +            +A E+     I      Q ++D A 
Sbjct: 531 ELG--------------GDVNALP-------DYFISALEMPAEGHIAMMEAVQPFVDTAI 569

Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           S  + +  +   +    +Y QAW   LK     R  S       T
Sbjct: 570 SKTVNIPADYPYEDFKDLYLQAWRARLKGLATYRPNSILGSVLET 614


>gi|302542052|ref|ZP_07294394.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302459670|gb|EFL22763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces himastatinicus ATCC 53653]
          Length = 954

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/630 (19%), Positives = 232/630 (36%), Gaps = 32/630 (5%)

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383
           A G      + E    E    L    F  ++P  FN GT +  Q+S+CF+ +V D +  I
Sbjct: 112 ANGYFASPADAEIFDHELTYALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESI 171

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
               +E  M+ K   G G + + +R     +    G + G + F++ A+ +A  +  G  
Sbjct: 172 LDWYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGA 230

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+ A    L+  H DVE F++ +    +  R   D      +    +  V         
Sbjct: 231 TRRAAKMVVLDVDHPDVEAFIETKVKEEEKVRALRDAGFDMDLGGDDITSVQYQNANNSV 290

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             ++        G +F +              +   +I A +L+RKM    +    P I 
Sbjct: 291 RVNDTFMKAVESGSQFGLRSRMT--------GEPIEEIDAKSLFRKMAEAAWACADPGIQ 342

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFD 617
           + D  N        G + +SN C+E        + + CNL S+NL+         N +FD
Sbjct: 343 YDDTINHWHTSPETGRITASNPCSEYMH----LDNSSCNLASLNLMKFLEDDDAGNQRFD 398

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++ A  +   +  +D  I       +K  ++    R +G+G     + L      Y S 
Sbjct: 399 AERFAKVVELVITAMDISICFADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSD 458

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS--IGLLAEVRDE 735
               +A      ++  +   S ELA   G Y  +  +                +A+  D+
Sbjct: 459 GGRALAGAITSLMTGTSYKRSAELAGVVGPYDGYARNADAHNRVMKQHSDANAIAKRVDD 518

Query: 736 LA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YV 791
           L   +   +   W ++ +  +  G RN+    +APT TI  +    +  ++P    + + 
Sbjct: 519 LDSPVWAAATEAWQDVLRLGEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFK 578

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF 849
           K    G   +VN+ +   LK+     E + + +      G++ +   +  +  ++   A 
Sbjct: 579 KLVGGGSMQIVNNTVPKALKRLGYQPEQVEAIVAHIAEHGNVIDAPGLKLEHYEVFDCAM 638

Query: 850 ---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905
               I PM  +   +  Q ++  A S  + + E  + ++++ IY + W +GLK     R 
Sbjct: 639 GERSISPMGHVRMMAAAQPFLSGAISKTVNMSESATVEEIEEIYFEGWKLGLKALAIYRD 698

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
                   S  K  +               
Sbjct: 699 NCKVGQPLSAKKKEEKAAEQAEPEVEKVVE 728


>gi|83594588|ref|YP_428340.1| ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC
           11170]
 gi|83577502|gb|ABC24053.1| Ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 786

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 155/659 (23%), Positives = 264/659 (40%), Gaps = 76/659 (11%)

Query: 302 YDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                +  +GS +E  P+  F RV  G+  ++  +          + +  +         
Sbjct: 13  EKYRLVDPDGSSLEQGPEDSFARVCRGIYARDPRRAVHEPLALEAMKALEWCPGGRIHAG 72

Query: 361 SGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF    VPD + GI  AL   A+  +  GG+G D++ +R  GA +  T 
Sbjct: 73  AGTDRRVTLINCFVNMIVPDRMDGIMEALTRAALTMQQGGGIGTDFSTLRPRGAKVRRTG 132

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             S G + F+++ +     +  GG R+GA+   +   H D+  F+  +   G    R  +
Sbjct: 133 SVSSGPLSFMEIWHAMCGTIMSGGARRGAMMGTMICDHPDLPAFITAKAQAG----RLTN 188

Query: 479 MNTANWIPDLFMKRVTQNAGW---TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  + D FM+ V ++A W       P + + L  +  +  E  Y             
Sbjct: 189 FNVSVLVTDAFMRAVDEDATWDLGFSVPPADPARLVAVTERNGEPWY------------- 235

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V+ ++SA ALW K++   ++   P + F D  N R+   +   +  +N C E  L  + +
Sbjct: 236 VYERLSARALWEKIIRTTYDHAEPGVIFIDRVNERNNLAYCETISCTNPCGEQPLPPNGD 295

Query: 596 ETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               CNLG +NL     +       FD  +LA      VR LDNV+D++   +E   K  
Sbjct: 296 ----CNLGCVNLAVLVRDPFTPQARFDDARLAEVAAIGVRFLDNVLDVSNFPVEDQAKEA 351

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R +GLG+MG  +AL +L + Y SP A+      M  +   A  AS ELA ERG +  
Sbjct: 352 QAKRRLGLGIMGLGNALQMLGLRYGSPAAIAETRRIMALLRDAAYRASAELAGERGPFPL 411

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +                     RD+L      +   D+L+ ++   G+RN   + IAPT 
Sbjct: 412 Y--------------------DRDQLLARPFIQELPDDLRAKIAEQGLRNGVMLTIAPTG 451

Query: 771 TIAN-ICGVSQSIDPSYQNLYVKSNM---SG--DFTVVNSFLVNELKQRDLWDEAMISDL 824
           T A     VS  ++P++   Y +  +    G  +F V+++   +  + R L         
Sbjct: 452 TTAIYYNNVSSGLEPTFGWRYFRKVLRPDGGHDEFAVIDAGFESWCRTRGLDPAT----- 506

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
                    +  +PD +     TA E+     +   +  Q++ID + S  +    + S  
Sbjct: 507 -------APLTGLPDSM----VTALELSVEDHLRMQAACQEFIDASISKTINCPADMSYD 555

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
               +Y+ A+ MG K     R  S T     +L         V       +      P 
Sbjct: 556 SFAAVYKLAYEMGCKGCTTYRP-SGTRGSVLSLDATTPAAAPVQKAPAPRTPAPPMRPE 613


>gi|295836140|ref|ZP_06823073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB74]
 gi|197695235|gb|EDY42168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. SPB74]
          Length = 964

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 131/668 (19%), Positives = 241/668 (36%), Gaps = 42/668 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L D   +       E  Q F             + E    E  + L    F  
Sbjct: 97  RETGLKQLID-RIVKTYRKAGEDNQYF---------ASPADAEIFEHELAHALLHQIFSF 146

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R    
Sbjct: 147 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 206

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H DVE F++ +    +
Sbjct: 207 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVEGFIETKVKEEE 265

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +                 + +    ++D +    E A +   R    
Sbjct: 266 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 319

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
           GE  V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E    
Sbjct: 320 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 376

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +   CNL S+NL+         N  F+ ++ A  +   +  +D  I       EK 
Sbjct: 377 ---LDNTSCNLASLNLMKFLKDDGNGNQSFEAERFAKLVELVITAMDISICFADFPTEKI 433

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R +G+G     + L      Y S     +A      ++  A   S ELA   G
Sbjct: 434 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAISSLMTGTAYRRSAELAAVVG 493

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762
            Y  F  +                       ++      +   W ++ +  +  G RN+ 
Sbjct: 494 PYEGFARNATAHKRVMKQHADANGAAVRMDDLDTPVWAAATEAWQDVLRLGEKNGFRNAQ 553

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              +APT TI       +  ++P    + + K    G   +VN  +   L++    +E +
Sbjct: 554 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 613

Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875
            + +     +G++ +   +  +  ++   A     I PM  +   +  Q WI  A S  +
Sbjct: 614 EAIVAHIAENGNVVDAPALKTEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 673

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
            + E  + ++++ IY +AW +G+K     R         S  K  + K      ++    
Sbjct: 674 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKTEIAEKSEETIC 733

Query: 935 THSLGIPS 942
                +  
Sbjct: 734 AAVEKVVE 741


>gi|296316021|ref|YP_003662485.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 5]
 gi|40456144|gb|AAR86122.1| UL39 ribonucleotide reductase large subunit [Bovine herpesvirus 5]
          Length = 800

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 156/654 (23%), Positives = 264/654 (40%), Gaps = 59/654 (9%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALK-------------ETEKEKRAVEFY-NLLS 347
            + Y   + G  +E    FF+R+A   A               E          Y   L 
Sbjct: 155 EEMYLAKLEGGALESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAVFNAYLTALY 214

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               + +TP +  +G     L+SC+L    V      +     E A +    GG+G  + 
Sbjct: 215 RQLVVPATPIMLFAGRARGSLASCYLLNPQVTSSTEAVEAITTEVARILLNRGGIGISFQ 274

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
               L +          G++  LK+ +  A+A+N   +R   +C Y+E WH DV   L++
Sbjct: 275 SFNRLASRDCKR-----GIMGALKLLDSMAMAINSDSERPTGICVYIEPWHCDVRAVLNM 329

Query: 466 R-KNTGDDRRRTHDMNTANWIPDLFMKRVTQ-----NAGWTLFSPDEVSDLHDLYGKEFE 519
           R     D+  R  ++ +  W+PDL   R                 D  S L  L+G  F 
Sbjct: 330 RGMLARDESTRCDNLFSCLWVPDLLFDRYLAYLEGCEGVVWTLFDDRASHLSRLHGPAFA 389

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578
             YE  ER     E      +    L   ++  +  TG P++ FKD CN        G  
Sbjct: 390 AEYERLER-----EGLGVEAVPVQDLAFLVVRSIVMTGSPFVMFKDACNRHYHMDTAGDA 444

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLD 633
           +  SNLCTEI   +  +   VCNL S+NL       +     FD+  L++   TA   ++
Sbjct: 445 LTGSNLCTEIVQRADPDAHGVCNLASVNLPRCVREGEGGALAFDFAALSTAAATAAIFVN 504

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
            ++    +  E+A +    HR++G+G  G  + L  L +   SP A  +  E  E +   
Sbjct: 505 AMMLGGQYPTERAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLNVEIAERLLLA 564

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            ++ S  L +     +  F  S + +G+ P D             +  +    W  L+++
Sbjct: 565 VMATSATLCEYGCAPFEDFARSKFARGLMPFD---------GYEGVVLSLPRAWARLREK 615

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V   G+ N+  +A+ PT + + +   S+   P + N++ K  MSG+    N  L+  L++
Sbjct: 616 VARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLPLMRALRK 675

Query: 813 RDLWDEAM---ISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
               + +    +  L     S+     +  P        TAFE D   LI+  + R  ++
Sbjct: 676 HFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERLIDLCADRAPFV 735

Query: 868 DQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           DQ+QS++L++ EP        ++  +   A+  GLKT  YY + R AT+    T
Sbjct: 736 DQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNNGVFT 789


>gi|163786627|ref|ZP_02181075.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878487|gb|EDP72543.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 599

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 158/648 (24%), Positives = 259/648 (39%), Gaps = 124/648 (19%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
                 + L   Y           P+     +A             A +FY  ++  ++ 
Sbjct: 47  LTDHSRKFLSSGYLTEDT-----TPEERIREIANNAEKILNIP-GFADKFYGYMAEGYYS 100

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++P   N G +     SCF + + DD+  I     E  M++K  GG    +  +R  GA
Sbjct: 101 LASPVWSNFGKKRGLPISCFGSHISDDMGDILYTQSEVGMMSKLGGGTSGYFGKLRHRGA 160

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   NG+S G +  +++       V+QG  R+G    YL   H D+ EFL++      +
Sbjct: 161 PVKN-NGESSGAVHIMQLFEKMVDVVSQGSVRRGRFSPYLPIEHNDINEFLEIGT----E 215

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                ++     + + +M+ +                         E             
Sbjct: 216 GNPIQELTHGVTVGNEWMQEMIDGDT--------------------EKR----------- 244

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS---PQQHVGVVHSSNLCTEIT 589
                      A+W K+L    E G+P+I FKD  N  +    Q++   +++SNLC+EI 
Sbjct: 245 -----------AIWAKVLQRRGEIGYPYIFFKDNANNTAPEVYQENKHEIYASNLCSEIM 293

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------------ 637
           L ++   + VC L SINLL       +D  K    + T V  LD V++            
Sbjct: 294 LPTNDRWSFVCVLSSINLL------HYDKWKDTDAVETMVYFLDAVLEEFVTKLEVYRDS 347

Query: 638 ------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
                      +EKA      +RA+G+G +G+ S L    +P+ S EA  +  E  + I 
Sbjct: 348 PDRDDRQTFMFMEKAYNFAKENRALGMGALGWHSLLQSKMLPFDSAEAFNLNSEIFKTIK 407

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             ++ AS ELA++ G     KG                                      
Sbjct: 408 EKSVKASEELAEKFGEPEVMKG-------------------------------------- 429

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                G RN+   A+APT + A I G VSQ I+P + N YVK       T+ N FL   L
Sbjct: 430 ----YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNSYVKDIAKIKTTIKNPFLKALL 485

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           K++ +    +   ++ +DGS+ ++E + +  K +  T  EID M +I  A+ RQ  IDQ 
Sbjct: 486 KEKGMDTVEIWKSIRDYDGSVQHLEGLTELEKDVFKTYSEIDQMTIIYQAANRQNHIDQG 545

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           QSLN+ +  +   K ++ +Y  AW +G+K+ YY  S +A    K   +
Sbjct: 546 QSLNIMVHPDMPVKDINKLYVTAWQLGVKSLYYQHSMNAAQKFKQKKE 593


>gi|54026278|ref|YP_120520.1| ribonucleotide-diphosphate reductase subunit alpha [Nocardia
            farcinica IFM 10152]
 gi|54017786|dbj|BAD59156.1| putative ribonucleoside-diphosphate reductase alpha subunit [Nocardia
            farcinica IFM 10152]
          Length = 1102

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 146/561 (26%), Positives = 239/561 (42%), Gaps = 66/561 (11%)

Query: 369  SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
             +CFL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +
Sbjct: 564  HNCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIM 623

Query: 429  KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
            K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+
Sbjct: 624  KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 683

Query: 489  FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWR 547
              +   +N    LFSP    D+  +YGK F       +      + ++ + KI A   ++
Sbjct: 684  TFELAKKNEDMYLFSP---YDVERIYGKPFADIDVTEKYYEMVDDKRIRKSKIKAREFFQ 740

Query: 548  KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597
             +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   S+  E           
Sbjct: 741  TIAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSEFNDDLSYAKVG 798

Query: 598  --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654
                CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N    
Sbjct: 799  KDISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNQQSH 853

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKG 713
            AIGLG M     L    I Y S E ++  +     + +HA+ AS  LA ERG Y   F  
Sbjct: 854  AIGLGQMNLHGYLARERIHYGSDEGIDFTNMYFYTVVYHALRASNRLAIERGTYFGGFPE 913

Query: 714  SLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
            S +  G +       + E +         +  +   ++  W ELK  V   G+ N N  A
Sbjct: 914  SKYASGEYFDKYTEQVWEPKTERVRQLFADAGVRIPTQDDWRELKASVMEHGIYNQNLQA 973

Query: 766  IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824
            + PT +I+ I   + SI P    + ++     G       ++ N+               
Sbjct: 974  VPPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYMTND--------------- 1018

Query: 825  KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                              + +  A+EI    +I++ +   + +DQ  SL L+  +  + +
Sbjct: 1019 ----------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTR 1062

Query: 884  KLDFIYRQAWLMGLKTTYYLR 904
             L+     AW  G+KT YY+R
Sbjct: 1063 DLNKAQIYAWRKGIKTLYYIR 1083


>gi|37525252|ref|NP_928596.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784679|emb|CAE13579.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotide
           reductase R1 subunit) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 709

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 165/668 (24%), Positives = 277/668 (41%), Gaps = 64/668 (9%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318
           +EG     + E      +  L      ++     +LG    Y  Y L    N   +E  +
Sbjct: 63  QEGYYEINVLEQYDFTVIKKLFQQAYSKKFRFQTFLGAFKYYTSYTLKTFDNKRYLERYE 122

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377
                VA+ LA  +      A    + + S  F  +TPT  N G +   +L SCFL  + 
Sbjct: 123 DRVCMVALTLAQGDQ---MLACRLVDEMISGRFQPATPTFLNCGKKQRGELVSCFLLRIE 179

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+  D    
Sbjct: 180 DNMESIGRSVNSALQLSKRGGGVAFLLSNLRETGAPIKMIQNQSSGVIPVMKMLEDAFSY 239

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K    N 
Sbjct: 240 ANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSIGVVIPDITFKLAKHNE 299

Query: 498 GWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              LFSP ++  ++ +          Y          + K    I+A   +  +  + FE
Sbjct: 300 DMYLFSPYDIQRVYGVPMSEISMTEKYAEMVNNQQIRKSK----INAREFFMALAELQFE 355

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608
           +G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E              S NL 
Sbjct: 356 SGYPYIMYEDTVNNANPI--KGRINMSNLCSEILQVNSASEYEEDLSYHHIGKDISCNLG 413

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +    +  D      +I TAVR L  V D+ +  ++   +K N    AIGLG M     L
Sbjct: 414 SMNIAHTMDSPDFTLSIETAVRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYL 473

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSI 726
               I Y S E ++  +     +++HA+  S ++A ER +Y   FK S +  G F     
Sbjct: 474 AREKIHYGSEEGIDFTNIYFYIVTYHALRTSNQIAIERNSYFKGFKDSRYANGEFFNKYT 533

Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            +  +          ++  +   ++  W ELK  +   G+ N N  AIAPT +I+ I   
Sbjct: 534 EITWQPQTKKVSQLFEQAGIKIPNQQDWLELKASIMAHGIYNQNLQAIAPTGSISYINNS 593

Query: 779 SQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++ +  +G       F+ N                             
Sbjct: 594 TSSIHPIVSRIEIRKDGKTGRVYYPAPFMTN----------------------------- 624

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
             +  + +  A+EI P  +I++ +   + +DQ  SL L+  D+ + + ++     AW   
Sbjct: 625 --NNLEYYQDAYEIGPEKIIDTYAIATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKR 682

Query: 897 LKTTYYLR 904
           +KT YY+R
Sbjct: 683 IKTLYYIR 690


>gi|308516939|emb|CBW47044.1| hypothetical host-like ribonucleoside diphosphate reductase
           [Roseovarius sp. 217 phage 1]
          Length = 776

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 151/664 (22%), Positives = 261/664 (39%), Gaps = 87/664 (13%)

Query: 299 QILYDRYFLHINGSRIEM---PQAFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349
           QI   +Y    +    E        + R+A        L     E+E     F+  L  F
Sbjct: 13  QIWNQKYRFKTDRDDFESDLSVVDTWGRIASACSNLPHLHNNHAEREALEQRFFQALYDF 72

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             + +      +GT R+  L +C++  T+PD L GIF  L+E A+  +  GG+G D++ +
Sbjct: 73  KLLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    S G + F+ V +     +   G R+GA+ A +   H D+ EF+  ++
Sbjct: 133 RPKGAPVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMEFVHAKQ 192

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  R  + N +    D FM+ V  +  W L                          
Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVANDEEWDLVF------------------------ 224

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                   V+  I AV LW  +L   ++   P + F D  N  +    +  + ++N C E
Sbjct: 225 -----NGVVYETIRAVELWNTILQNTYDYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279

Query: 588 ITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
             L         C LGS+NL  H           D  +L  ++RT VR+LD+V+D +   
Sbjct: 280 QPLPPY----GACLLGSVNLAKHVFAPFTEQADVDMAELEKSVRTGVRLLDSVVDTSKFP 335

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           + + +K     R  GLG+ G    L +    Y S +AV+  +  M  I+  A   S+E+A
Sbjct: 336 LPEQEKEAKEKRRAGLGVTGLADLLFMTGYRYGSVQAVDCTETIMMNIAIWAYEESIEMA 395

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +E G     + +                E R +   +   +   + ++  +   G+RN++
Sbjct: 396 KEMGPAPCLQTT----------------EARMKFIQSGFMQRMPEYIRDDIIQWGIRNTH 439

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
            +++APT TI+   G  S   +P +   + +   + D T          +   ++D A++
Sbjct: 440 LLSVAPTGTISMYAGNVSSGGEPIFAPSFQRKVTNDDGT---------KRTETVYDYAIL 490

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
              K+      +     + +    ATA +++P   I   +  QKW+D + S  + L E  
Sbjct: 491 LFEKHFG---EDTGAAQEWMDNYLATAQDLEPQDHIVMQAVLQKWVDSSISKTVNLPENI 547

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR----SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           S +    +Y  A+  G K     R    + S  SVE    K     +N     D      
Sbjct: 548 SFEDFKAVYDMAYETGCKGCTTYRPNDVTGSVLSVETKEEKPEPEIVNEEYDGDMRVVAR 607

Query: 937 SLGI 940
              +
Sbjct: 608 PHEV 611


>gi|257415188|ref|ZP_05592182.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257157016|gb|EEU86976.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           ARO1/DG]
          Length = 719

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDKQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K  RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|110642800|ref|YP_670530.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli 536]
 gi|110344392|gb|ABG70629.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia
           coli 536]
          Length = 701

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 175/673 (26%), Positives = 282/673 (41%), Gaps = 60/673 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           +     + EG     +        ++ L             +LG    Y  Y L   +G 
Sbjct: 48  QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           R    + F  RV M         E  A +  + + S  F  +TPT  N G +   +L SC
Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+   
Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550
              +NA   LFSP    D+  +YGK F   A      +    E    + ++A   ++++ 
Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLA 342

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603
            + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  
Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    +  D    A T+ TAVR L  V D+ + H++   +  N    AIGLG M 
Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMN 460

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +
Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520

Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                            EL         +R  W +L+  V   G+ N N  A+ PT +I+
Sbjct: 521 FSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580

Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++    +G       F+ N                        
Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN-LYLDEPSGKKLDFIYRQ 891
                  +   ++  A+EI    +I++ +   + +DQ  SL  L+LD  + + +D     
Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAETTRHVDQGLSLTLLFLDTATTRDIDKAQIY 669

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 670 AWRKGIKTLYYIR 682


>gi|315173868|gb|EFU17885.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1346]
          Length = 719

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K  RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMKYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|283778372|ref|YP_003369127.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pirellula staleyi DSM 6068]
 gi|283436825|gb|ADB15267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pirellula staleyi DSM 6068]
          Length = 1041

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 124/578 (21%), Positives = 223/578 (38%), Gaps = 33/578 (5%)

Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
              +PQ S+CF+ +V D++  I       AML K+  G G D + +R     + G  GK 
Sbjct: 186 PYEYPQGSACFIQSVDDNMEAIMRLATSEAMLFKFGSGTGTDLSTLRSHREKLSG-GGKP 244

Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G + F++V +  A  V  GGK R+ A    L+ WH D+ EF++ +     + R+ H   
Sbjct: 245 SGPLSFMRVYDQIAAVVKSGGKTRRAAKMQSLKVWHPDILEFVECK---WKEERKAH--- 298

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK- 539
               I     +       ++        +L      EF  A+E  E+ A        ++ 
Sbjct: 299 --VLIEKGGYEANFNGEAYSSILFQNA-NLSVRLTDEFMQAHEKNEKWATHWITDASKEG 355

Query: 540 --ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
               A  L  +M    ++ G P + +    N      + G +++SN C+E        + 
Sbjct: 356 PVYEARWLLNRMAECAWQCGDPGVQYDTTINKWHTCPNSGRINASNPCSEYMF----LDD 411

Query: 598 AVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             CNL SINL+     +  F+ D+  +  R      + ++D   +  E+  +++H  R +
Sbjct: 412 TACNLSSINLMKFREADGSFNVDRFKTACRLFFIAQEILVDHASYPTEQIARNSHAFRPL 471

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG     S +    +PY S  A  +       +   A  AS E+A   G +  ++ +  
Sbjct: 472 GLGYSNLGSLIMSNGLPYDSEAAYGLCGSVTALLHGAANLASAEMAAVVGPFEGYEANRE 531

Query: 717 DQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                       + +        +   +R  WD++    +  G RN+    +APT TI+ 
Sbjct: 532 PFLRVMQMHRDAVEDINPAGPADLQEAARATWDQVLALGRRTGFRNAQATVLAPTGTISF 591

Query: 775 ICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGS 830
           +    +  I+P    + Y +    G   +VN  +   L +    D  +   LKY   + +
Sbjct: 592 MMDCDTTGIEPDIALVKYKQLAGGGMLKIVNGTVPMALGKLGYDDPQIKGILKYVNENDT 651

Query: 831 IGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
           I     + D+   +   AF        I+    I   +  Q ++  A S  + +  + + 
Sbjct: 652 IEGAPELADEHLAVFDCAFKPANGVRSINWRAHIRMMAAAQPFLSGAISKTVNMPTDVTP 711

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             +   Y   W +GLK     R  S  S   +T     
Sbjct: 712 ADIGDAYTWGWQLGLKALAIYRDGSKQSQPLNTKNDAS 749


>gi|238784827|ref|ZP_04628828.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
 gi|238714243|gb|EEQ06254.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           bercovieri ATCC 43970]
          Length = 693

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 167/711 (23%), Positives = 289/711 (40%), Gaps = 75/711 (10%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +              IEE    + + +     
Sbjct: 16  DRLAARQYFLQHVNQNTVFFHNLQEKLNY-------------LIEEEYYEKEVLDQYDFS 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA     
Sbjct: 63  FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
             + A E    + S  F  +TPT  N G +   +L SCFL  + D++  I  ++     L
Sbjct: 120 NPQLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    +    LFSP    D+  +
Sbjct: 240 AHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNSEDMYLFSP---YDVEQV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YG        + + +      ++ + KI A   ++ +  + FE+G+P++ F+D  N  +P
Sbjct: 297 YGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTVNRANP 356

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTI 625
               G ++ SNLC+EI   +S  E         +    S NL +    +  D      +I
Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAHTMDSPDFGKSI 414

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S EA++  +
Sbjct: 415 ETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735
                + +HAI AS  LA ER   +  F  S +  G +    I    + +         +
Sbjct: 475 IYFYTVVYHAIRASNLLAIERGCHFKGFDESAYASGSYFTKYIAQRWQPKTAKVEALFAD 534

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           + +    +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 535 VGITIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEG 594

Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ N+                                 + +  A++I P 
Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGPE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKRGIKTIYYIR 674


>gi|49475006|ref|YP_033047.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           henselae str. Houston-1]
 gi|49237811|emb|CAF27006.1| Ribonucleotide reductase alpha-chain [Bartonella henselae str.
           Houston-1]
          Length = 716

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 175/689 (25%), Positives = 291/689 (42%), Gaps = 66/689 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  ++     +++ + +D  ++    K    F F    +LG 
Sbjct: 48  LQHVNQNTVFFHNLKEKIDYLIEEGYYEKALFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +     VA+ LA      +  A  F + + +  F  +TP
Sbjct: 108 FKYYTSYTLKTFDGKRYLERYEDRICLVALYLAQG---NKALAESFVDEIITGRFQPATP 164

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I 
Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIK 224

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GV+P +K+  D+    NQ G R+GA   YL   H+D+ +FLD ++   D++ R
Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFS     D+  + GK F         ++     K
Sbjct: 285 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAK 341

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  +KISA   ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   + +
Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNEA 399

Query: 595 EETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646
            E              S NL +       D D    T+  AVR L  V D+ N   +   
Sbjct: 400 SELEADLTYRTVGSDISCNLGSMNIAKAMDSDDFGRTVEAAVRALTAVSDMSNIACVPSI 459

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-R 705
            K N    AIGLG M     L    I Y SPEA++  +     +++HAI  S  +A+E +
Sbjct: 460 AKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTNIYFYIVAYHAIRVSNLIARERQ 519

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIG 757
             +  F+ S +  G F    I    + +  L     +R          W ELKK V   G
Sbjct: 520 KMFVGFEKSAYADGSFFAKYIEQEWKPQFSLVQELFARNNIVIPDQKDWQELKKLVIEYG 579

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816
           + N N  A+ PT +I+ I   + SI P    + ++     G       ++ N        
Sbjct: 580 LYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 632

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                           N++         +  A+EI P  +I++ +   + +DQ  SL L+
Sbjct: 633 ----------------NLDF--------YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLF 668

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             +  + + ++     AW  G+K+ YY+R
Sbjct: 669 FPDTATTRDINRAQIYAWKKGIKSIYYVR 697


>gi|320008140|gb|ADW02990.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces flavogriseus ATCC 33331]
          Length = 967

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 124/645 (19%), Positives = 228/645 (35%), Gaps = 70/645 (10%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+  V D +  I    +E  M+ 
Sbjct: 127 EVFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 186

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 187 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 245

Query: 454 TWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWIPDLFMKRVT 494
             H D+E F++ +    +  R                   +  + N +  + D FMK V 
Sbjct: 246 VDHPDIENFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVE 305

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
               + L +                                V  ++ A +L+RKM    +
Sbjct: 306 AGGKFGLRARMT---------------------------GDVIEEVEAKSLFRKMAEAAW 338

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612
               P I + D  N        G ++ SN C+E        +   CNL S+NL+      
Sbjct: 339 ACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDD 394

Query: 613 ---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  F+ ++ A  +   +  +D  I       +K  ++   +R +G+G     + L  
Sbjct: 395 GLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGENTRAYRQLGIGYANLGALLMA 454

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIG 727
               Y S     +A      ++  +   S ELA   G Y  +  +     + +       
Sbjct: 455 TGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHSDAN 514

Query: 728 LLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784
            +A   D+L   +   +   W ++ +     G RN+    IAPT TI       +  ++P
Sbjct: 515 AVAVRMDDLDAPVWAAATEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTTGLEP 574

Query: 785 SYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDL 841
               + + K    G   +VN  +   L++     E + + +      G++ +   +  + 
Sbjct: 575 DLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQPEQIEAIVAHIADHGNVVDAPGLKTEH 634

Query: 842 KKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
            ++   A     I  M  +   +  Q WI  A S  + L E  + + ++ +Y +AW MG+
Sbjct: 635 YEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGV 694

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K     R         S       K       +    T    +  
Sbjct: 695 KALAIYRDNCKVGQPLSAKTKEKEKEAVTAKAEDTIRTAVEKVVE 739


>gi|29375102|ref|NP_814255.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis V583]
 gi|227519133|ref|ZP_03949182.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX0104]
 gi|227553837|ref|ZP_03983886.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis HH22]
 gi|229548396|ref|ZP_04437121.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis ATCC 29200]
 gi|255971024|ref|ZP_05421610.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|256617389|ref|ZP_05474235.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256957627|ref|ZP_05561798.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256959664|ref|ZP_05563835.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|257080135|ref|ZP_05574496.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|257083551|ref|ZP_05577912.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|257085824|ref|ZP_05580185.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|257088967|ref|ZP_05583328.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257418243|ref|ZP_05595237.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257420750|ref|ZP_05597740.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis X98]
 gi|293384856|ref|ZP_06630699.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis R712]
 gi|293389146|ref|ZP_06633613.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis S613]
 gi|294780705|ref|ZP_06746066.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis PC1.1]
 gi|307268567|ref|ZP_07549939.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4248]
 gi|307275555|ref|ZP_07556696.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2134]
 gi|307288832|ref|ZP_07568810.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0109]
 gi|307290615|ref|ZP_07570523.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0411]
 gi|312904831|ref|ZP_07763971.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0635]
 gi|312908154|ref|ZP_07767132.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312979090|ref|ZP_07790805.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 516]
 gi|29342561|gb|AAO80326.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Enterococcus
           faecalis V583]
 gi|227073410|gb|EEI11373.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX0104]
 gi|227177090|gb|EEI58062.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis HH22]
 gi|229306612|gb|EEN72608.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis ATCC 29200]
 gi|255962042|gb|EET94518.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|256596916|gb|EEU16092.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256948123|gb|EEU64755.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256950160|gb|EEU66792.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256988165|gb|EEU75467.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|256991581|gb|EEU78883.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|256993854|gb|EEU81156.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|256997779|gb|EEU84299.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257160071|gb|EEU90031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257162574|gb|EEU92534.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis X98]
 gi|291077860|gb|EFE15224.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis R712]
 gi|291081517|gb|EFE18480.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis S613]
 gi|294452315|gb|EFG20756.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis PC1.1]
 gi|306498329|gb|EFM67838.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0411]
 gi|306500301|gb|EFM69640.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0109]
 gi|306507660|gb|EFM76789.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2134]
 gi|306515056|gb|EFM83599.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4248]
 gi|310625862|gb|EFQ09145.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 512]
 gi|310631837|gb|EFQ15120.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0635]
 gi|311288124|gb|EFQ66680.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis DAPTO 516]
 gi|315026266|gb|EFT38198.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2137]
 gi|315032245|gb|EFT44177.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0017]
 gi|315035531|gb|EFT47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0027]
 gi|315143981|gb|EFT87997.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX2141]
 gi|315146929|gb|EFT90945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4244]
 gi|315155003|gb|EFT99019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0043]
 gi|315158780|gb|EFU02797.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0312]
 gi|315161037|gb|EFU05054.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0645]
 gi|315166221|gb|EFU10238.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1302]
 gi|315170810|gb|EFU14827.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1342]
 gi|315574920|gb|EFU87111.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0309B]
 gi|315576499|gb|EFU88690.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0630]
 gi|315582367|gb|EFU94558.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0309A]
 gi|327534209|gb|AEA93043.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis OG1RF]
          Length = 719

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K  RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|257080867|ref|ZP_05575228.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|256988897|gb|EEU76199.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
          Length = 719

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 158/709 (22%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEY-- 325

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                      RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 326 DNLVANPSIRKRKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIARERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|229547641|ref|ZP_04436366.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX1322]
 gi|255973537|ref|ZP_05424123.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256761392|ref|ZP_05501972.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256852444|ref|ZP_05557820.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis T8]
 gi|307282793|ref|ZP_07562993.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0860]
 gi|312900213|ref|ZP_07759525.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0470]
 gi|229307133|gb|EEN73120.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis TX1322]
 gi|255966409|gb|EET97031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256682643|gb|EEU22338.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256712298|gb|EEU27330.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecalis T8]
 gi|306503649|gb|EFM72880.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0860]
 gi|311292574|gb|EFQ71130.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0470]
 gi|315028519|gb|EFT40451.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX4000]
 gi|315167730|gb|EFU11747.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1341]
          Length = 719

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIKKYSMDF-IEKLYAFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K  RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|309805907|ref|ZP_07699939.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|312873293|ref|ZP_07733348.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|308167683|gb|EFO69830.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|311091173|gb|EFQ49562.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2052A-d]
          Length = 725

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 184/754 (24%), Positives = 313/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +  K    + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKIKPNTKKFKS-FQERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I ++  K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|237651505|ref|YP_002898976.1| putative ribonucleoside-diphosphate redutase [Roseophage EE36P1]
 gi|220898137|gb|ACL81394.1| putative ribonucleoside-diphosphate redutase [Sulfitobacter phage
           EE36phi1]
          Length = 776

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 150/652 (23%), Positives = 256/652 (39%), Gaps = 83/652 (12%)

Query: 299 QILYDRYFLHINGSRI---EMPQAFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349
           QI   +Y            E     + R+A        L    TE++     FYN L  F
Sbjct: 13  QIWNQKYRFKTERDGFVSDENVVDTWGRIASACSNLPHLHNNHTERDALEARFYNALYDF 72

Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            F+ +      +GT R+  L +C++  T+PD L GIF  L+E A+  +  GG+G D++ +
Sbjct: 73  KFLRAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    S G + F+ V +     +   G R+GA+ A +   H D+ +F+  ++
Sbjct: 133 RPKGALVRGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMDFVTAKQ 192

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  R  + N +    D FM+ V+ ++ W L                          
Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVSADSDWDLVF------------------------ 224

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                + KV++ I A  LW  +L   +    P + F D  N  +    +  + ++N C E
Sbjct: 225 -----DGKVYQTIKAKELWDAILWNTYNYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279

Query: 588 ITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
             L         C LGS+NL  H          + D   L  T+RT VR+LD+V++ +  
Sbjct: 280 QPLPPY----GACLLGSVNLAKHVVFPFVKGQAEIDMGMLEQTVRTGVRILDSVVETSLF 335

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +E  +      R  GLG+ G   AL +    Y S +AV+  D  M  I+  A   S+++
Sbjct: 336 PLEAQRDEARFKRRQGLGVTGLADALFMTGHKYGSEQAVDFTDTIMMNIAIWAYEESIKM 395

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E G                     +  E R++   +   +     +K  +   G+RNS
Sbjct: 396 AKEMGPAPCL----------------VSKEAREKFIQSGFMQRMPQYIKVGILEWGIRNS 439

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
           + +++APT TI+   G  S   +P +   Y +   + D T          +   ++D A+
Sbjct: 440 HLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT---------KRTETVYDYAV 490

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +   ++      +        +   ATA ++ P   I   +  QKW+D + S  + L  +
Sbjct: 491 LKFEEHFG--ENDNPEAIWWWENYMATAQDLTPADHIVMQAVIQKWVDSSISKTVNLPED 548

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            S      +Y  A+  G K     R    T    S     +  +        
Sbjct: 549 ISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLSVETKEEKPIEIETSVPQ 600


>gi|38234437|ref|NP_940204.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200700|emb|CAE50396.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           diphtheriae]
          Length = 719

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 170/711 (23%), Positives = 285/711 (40%), Gaps = 72/711 (10%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R   +K R        +   + T         E     +E       + +      +  
Sbjct: 35  GRIQFDKDREAANQFFLQHVNQNTVFFHDL--EEKIEYLVENNYYEPEVLDKYSFAGIKD 92

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338
           L       +     +LG    Y  Y L   +G R  E  +     VA+ LA       + 
Sbjct: 93  LFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLA---DGSIEL 149

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A    + + +  F  +TPT  NSG     +  SCFL  + D++  I  ++     L+K  
Sbjct: 150 ARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRG 209

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R+GA   YL   H 
Sbjct: 210 GGVALLLSNLRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHP 269

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK 
Sbjct: 270 DILNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKRNEDMYLFSP---YDVERVYGKP 326

Query: 518 F-----EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           F        Y +        + K    I+A + ++ +  + FE+G+P+I F+D  N  +P
Sbjct: 327 FADISVTELYADMVEDPRIRKTK----INARSFFQTIAEIQFESGYPYIMFEDTVNRANP 382

Query: 573 QQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
               G ++ SNLC+EI         N+      V    S NL +       D    A T+
Sbjct: 383 I--EGRINMSNLCSEILQVNSPSVLNADLTYEHVGEDISCNLGSMNIAMAMDSTDFAKTV 440

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V +  +  ++   KK N    AIGLG M     L   HI Y S E ++  +
Sbjct: 441 ETAIRGLTAVSEQTSIDSVPSIKKGNDAAHAIGLGQMNLHGYLGREHIFYGSEEGLDFTN 500

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAM 738
                + +  + AS ++A ER   +  F+ S +  G +     P D     A+V++    
Sbjct: 501 AYFAAVLYQCLRASHKIAAERGQRFEGFETSDYADGSYFDRFDPADFAPKTAKVQELFEN 560

Query: 739 NRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           +     +   W+ELK+ V   G+ N    A+ PT +I+ I   + SI P    + ++   
Sbjct: 561 STIVVPTAEDWEELKQLVMKDGLFNRYLQAVPPTGSISYINNSTSSIHPIASRIEIRKEG 620

Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G        + N+                                 + +  A+EI   
Sbjct: 621 KIGRVYYPAPHMDND-------------------------------NLEYYQDAYEIGFE 649

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I++ +   K++DQ  SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 650 KVIDTYAVATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKSLYYIR 700


>gi|91776891|ref|YP_546647.1| ribonucleoside-diphosphate reductase [Methylobacillus flagellatus
           KT]
 gi|91710878|gb|ABE50806.1| Ribonucleoside-diphosphate reductase [Methylobacillus flagellatus
           KT]
          Length = 719

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 142/657 (21%), Positives = 256/657 (38%), Gaps = 61/657 (9%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAF---FMRVAMGLALKETEKEKR--AVEFYN 344
           D   + + L I   +Y L          Q     + RVA  LA  E  +EKR    E + 
Sbjct: 19  DVPMQSVSLDIWDKKYRLKTKQGSFID-QDMDDTYKRVARALADVEETEEKRSLWFEKFL 77

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQL----SSCFLTT-VPDDLYGIFGALQENAMLAKYSGG 399
                  + +     N+G +  +      +C ++  V D + GI   + E  +  K   G
Sbjct: 78  WALRRGAIPAGRITSNAGAQEHKPATSTINCTVSGIVEDSMDGILEKVHEAGLTLKAGCG 137

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV
Sbjct: 138 IGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPDV 197

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            +F+  ++    +  R    N +  I   FM+ V  +A W L  P    +         +
Sbjct: 198 TDFIKAKR----EAGRLRQFNLSTLITREFMEAVKTDAEWKLAFPVTAREAEQDKLDLDD 253

Query: 520 IAYENYERQADRGE-----------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                +     + +            +V++ I A  LW  +++  ++   P     D  N
Sbjct: 254 EHAVVWREWPVKDKYLTRESDGKVACRVYKTIKAQRLWDVIMSSTYDFAEPGFILIDRVN 313

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
             +   +   + ++N C E  L         C LGSINL             FD+D+   
Sbjct: 314 EMNNNWYCENIRATNPCGEQPLPPY----GACLLGSINLTKFVREPFTDKAYFDWDEYRE 369

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +    R+LDNV++IN   +++ +      R  G+G +G  S L +L + Y   ++++  
Sbjct: 370 VVAIFTRMLDNVVEINGLPLQQQRDEIARKRRHGMGYLGLGSTLTMLRMKYGEADSLQFT 429

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLLAEVRDEL 736
           +E  + ++       V+LA+E+G     +            +     D I L  +V+ ++
Sbjct: 430 EEVTKVMAEVGWEVGVQLAEEKGPAPIMEEEFEITPDLLSKRPEMAKDGIKLGDKVKGKV 489

Query: 737 AMNRTSRLPWD---ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYV 791
            M R SR        L+KR+   G R S+  +IAPT TI+       S  I+PS+ + Y 
Sbjct: 490 LMGRYSRYLQQFPAALRKRIAETGARFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYS 549

Query: 792 KSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           ++ +         V+ F    L  R L +   +        S     ++P+        +
Sbjct: 550 RNVIREGKKSKEKVDVFSYELLAYRALVNPDAMPF------SDQAETQLPE----YFMDS 599

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
             I     ++  +  QKWID + S  + +  +        IY  A+  GLK     R
Sbjct: 600 STIPAKAHVDIQAAAQKWIDSSISKTINVPTDYDFNDFKDIYLYAYEKGLKGCTTFR 656


>gi|157148213|ref|YP_001455532.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter
           koseri ATCC BAA-895]
 gi|157085418|gb|ABV15096.1| hypothetical protein CKO_04024 [Citrobacter koseri ATCC BAA-895]
          Length = 706

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 178/735 (24%), Positives = 303/735 (41%), Gaps = 71/735 (9%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           + +  ++   + +   L +K             +K R+ V        +  +        
Sbjct: 1   MKQETMDYHALNAMLNLYDK-------AGHIQFDKDRQAVEVFFATHVRPNSVSFASQ-- 51

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        +V L             +LG    Y  Y L   +G
Sbjct: 52  DERLEYLLREGYYDESVLTRYDRAFVVKLFAHAHASGFRFQTFLGAWKYYTSYTLKTFDG 111

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA      E  A++  + + S  F  +TPT  N G +   +L 
Sbjct: 112 KRYLEDFEDRVTMVALTLAQG---NEALAMQLTDEILSGRFQPATPTFLNCGKQQRGELV 168

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 169 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 228

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 229 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVT 288

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP    D+  +YGK F     +        + +V ++ I+A   +++
Sbjct: 289 FRLAKENAQMALFSP---YDVERIYGKPFGDIAISERYDELLADERVRKQYINAREFFQR 345

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------N 601
           +  + FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+             +
Sbjct: 346 LAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASTYDENLDYAQTGH 403

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +    +  D      T+ TA+R L  V D+ +  ++   +  N    AIGLG 
Sbjct: 404 DISCNLGSLNIAHTMDSPNFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQ 463

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     +++HA++ S+ +A+ER   ++ FK S +  G
Sbjct: 464 MNLHGYLAREGIAYGSPEALDFTNLYFYTVTWHALNTSMMMARERGKTFAGFKQSRYASG 523

Query: 720 VF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +       D       VR   A   M    R  W  L+  V   G+ N N  A+ PT +
Sbjct: 524 EYFEQYLQGDWQPKTDTVRALFARSGMTLPGREMWARLRDEVMRYGIYNQNLQAVPPTGS 583

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++    +G       F+ N                      
Sbjct: 584 ISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTN---------------------- 621

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                    +   ++  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 622 ---------ENLDMYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 672

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 673 IYAWRKGIKTLYYIR 687


>gi|3077613|emb|CAA70765.1| ribonucleotide reductase subunit R1E [Corynebacterium ammoniagenes]
          Length = 720

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 164/690 (23%), Positives = 276/690 (40%), Gaps = 67/690 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301
             H     +Y       IE  V+ +     +++ +D  ++ +  K    F F +      
Sbjct: 51  LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKSFLGA 110

Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Y  Y        +G R  E  +    RV+M            A    + + S  F  +TP
Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQPATP 167

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G     +L SCFL  + D++  I  A+  +  L+K  GG+    + +R  GA I 
Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIK 227

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S G+IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R
Sbjct: 228 HIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIR 287

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGE 533
              ++    IPD+      +N    LFSP +V  ++            Y          +
Sbjct: 288 IKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVSDHYAEMVEDPRITK 347

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
               +KI+A   ++ +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI   +S
Sbjct: 348 ----KKINARHFFQTVAELQFESGYPYIMFEDTVNNANP-VKTGRINMSNLCSEILQVNS 402

Query: 594 SEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
                       + +  S NL +       D      T+  A+R L  V D     ++  
Sbjct: 403 PSSFNDDLSYEEMGSDISCNLGSMNIALAMDSPDFGGTVEAAIRGLTAVADKTAIDSVPS 462

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +  N    AIGLG M     L   HI Y S E ++  +     + + A+ AS ++A+ER
Sbjct: 463 IRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYAALRASNKIAKER 522

Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
              +S FK S +  GVF  +            + E+     ++  S   W +LK  V   
Sbjct: 523 GETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAEDWADLKAEVMEH 582

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815
           G+ N N  A+ PT +I+ I   + SI P    + ++     G        + N+      
Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                           A+E+    +I++ +   K++DQ  SL L
Sbjct: 637 -------------------------NLDYFQDAYEVGHEKIIDTYAVATKYVDQGLSLTL 671

Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  +  + + ++     AW  G+KT YY+R
Sbjct: 672 FFRDTAATRDINRAQIFAWRKGIKTLYYIR 701


>gi|300861975|ref|ZP_07108055.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|300848500|gb|EFK76257.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|323479609|gb|ADX79048.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis 62]
          Length = 719

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K  RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIAKERNQVFHNFEKSNYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|309804853|ref|ZP_07698915.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165792|gb|EFO68013.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 09V1-c]
          Length = 725

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +       + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKTMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I ++  K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|315149361|gb|EFT93377.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX0012]
          Length = 719

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +      +      E+ ++   + +  MDF +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+    K  RKI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383

Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI         N   E   +    S NL +    N  +      ++R   R L  V D  
Sbjct: 384 EILQIQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +   +  N     IGLG MG  +     H+ Y S E+++  D     +++  +  S
Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   + +F+ S +  G +    I      + +        +   +   W  L+ 
Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701


>gi|258544276|ref|ZP_05704510.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258520514|gb|EEV89373.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 555

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 155/600 (25%), Positives = 255/600 (42%), Gaps = 95/600 (15%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            P+A    +A   A    + +  A  F++ ++  ++  S+P   N G       SCF + 
Sbjct: 32  TPEARIRAIAEH-AGNILQDDTFAERFHHYMARGYYSLSSPIWSNFGLSRGLPISCFGSY 90

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D +Y I     E  M++K  GG    +  +R  G+ I   NGKS G   F K+ +   
Sbjct: 91  IGDSIYDIMRTTAEVGMMSKIGGGTSAYFGAIRPRGSDISN-NGKSDGSFNFSKLFDTII 149

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             ++QG  RKG    Y++  H D++E+LD+      +      M     I + +++ +  
Sbjct: 150 DVISQGTSRKGQFAGYIDIDHGDIDEWLDIHT----EGNPIQLMYYGVCISNAWLESMKA 205

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
                                  E                         +W K+L    E
Sbjct: 206 GDP--------------------EKR----------------------RVWAKVLQRKAE 223

Query: 556 TGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ FKD  N   P  +      V++SNLCTEI L +S EE+ VC L S+NLL    
Sbjct: 224 TGIPYLFFKDNANAGRPDVYKDRNMTVYASNLCTEIMLPASDEESFVCCLSSMNLLYFDE 283

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
               D  +L +    AV             +++A +    HRA+GLG++G+ S L    I
Sbjct: 284 WKHTDAPELLTQFLDAVMSEFIEKSAEIPFLDRAHRFAKRHRALGLGVLGWHSYLQANRI 343

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            + S  A++  +E  + +    ++AS  LA + G     KG                   
Sbjct: 344 AFDSFAAMQKNNEIFQLLQEKTLAASKALAAKFGEPELLKG------------------- 384

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791
                                   G RN+  ++IAPT + + I G VS S++P   N +V
Sbjct: 385 -----------------------YGRRNTTLLSIAPTKSSSFILGSVSPSVEPFKSNYHV 421

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           K       T  N FLV  LK++ + +E     +  +DGS+ ++  + D+ K+I  T  EI
Sbjct: 422 KDLAKIKTTYKNPFLVELLKEKGIDNEKTWESILLNDGSVQHLAALNDEEKEIFKTFAEI 481

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             + +I+ A++RQK+IDQ QS+N+ +  +   + ++ +Y  A  +GLK+ YY  S SA  
Sbjct: 482 SQLAVIQQAAQRQKYIDQGQSINVMIHPDTPTRDINQLYLTAAELGLKSIYYQHSMSAAQ 541


>gi|319407581|emb|CBI81231.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp.
           1-1C]
          Length = 716

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 176/675 (26%), Positives = 279/675 (41%), Gaps = 62/675 (9%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     IEE    R L E      +  L       R     +LG    Y  Y L   +G
Sbjct: 62  KEKIDYLIEEKYYERELFELYDFSFVKKLFKRAYAFRFRFPTFLGAFKYYTSYTLKTFDG 121

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +    RV +         +  A    + + +  F  +TPT  N+G +   +L 
Sbjct: 122 KRYLERYED---RVCLVALYLAQGNKSLAEGLVDEIITGRFQPATPTFLNAGKKQRGELV 178

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K
Sbjct: 179 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKKIENQSSGVLPVMK 238

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H+D+ +FLD ++   D++ R   ++    IPD+ 
Sbjct: 239 MLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDIT 298

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRK 548
            +    N    LFS     D+  + GK F         ++     K+  +KISA   ++ 
Sbjct: 299 FELARNNEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSKIRKKKISARVFFQT 355

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEETAVCN 601
           +  + FE+G+P+I F+D  N  +P    G +  SNLCTEI          +     AV N
Sbjct: 356 LAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEASELETDLTYRAVGN 413

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +       + D    T+  AVR L  V D+ N   +    K N    AIGLG 
Sbjct: 414 DISCNLGSMNIAKAMESDNFGRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719
           M     L    I Y +PEA++  +     +++HA+ AS  +A+ER   +  F+ S +  G
Sbjct: 474 MNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERKEVFVGFEKSAYANG 533

Query: 720 VFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F I  I    + + EL     +R          W ELK+ V   G+ N    A+ PT +
Sbjct: 534 HFFIKYIEKEWKPQFELVQELFTRNNIVIPNQKDWQELKQLVAQYGLYNRYLQAVPPTGS 593

Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G       ++ N                      
Sbjct: 594 ISYINYATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT--------------------- 632

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                       + +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 633 ----------NLEFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQ 682

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+K+ YY+R
Sbjct: 683 IYAWKKGIKSLYYVR 697


>gi|149277656|ref|ZP_01883796.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp.
           BAL39]
 gi|149231344|gb|EDM36723.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp.
           BAL39]
          Length = 696

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 163/706 (23%), Positives = 289/706 (40%), Gaps = 55/706 (7%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
             L ++              + +     +    Y+ E       ++      +  + N +
Sbjct: 21  FSLHKDKEAVRSYFLDYVNKNTVFFYTLKEKIDYLIEQEYYIDFYQWYTFEQMEEVYNMV 80

Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     ++     +  Y L  +     +E  +   + VA+ L          A  + 
Sbjct: 81  YAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVVAVALFLGQG---NVDHAKAYA 137

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            LL +  +  +TPT  NSG +   +L SCFL  + D+L GI  A+     L+   GG+  
Sbjct: 138 ELLINQEYQPATPTFLNSGKKRSGELVSCFLDEIGDNLNGIGYAIDSAMKLSSIGGGVSF 197

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +RG G  I     ++ GV+P +K+  DT    NQ G+R GA   YL  +H D+EEF
Sbjct: 198 NISKIRGRGESIKDVENRAGGVLPIMKILEDTFSYANQLGQRPGAGAVYLNVFHTDIEEF 257

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K   D++ R   ++    +PD FM+   ++    LF P  V   +  Y  E +   
Sbjct: 258 LDCKKINVDEKVRIKSLSIGVIVPDKFMELAEKDEACYLFQPHTVYKAYGKYLDEMD-MD 316

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E YE       +K  +KI+A  L  K+     E+G+P++ FK   N     + +G V  S
Sbjct: 317 EMYEELLTNSAVKK-KKINARHLMVKIAQTQKESGYPYLFFKGNANKGHALKDIGNVKFS 375

Query: 583 NLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           NLCTEI   S   +  +           S NL +       +  ++   + TA+R L  V
Sbjct: 376 NLCTEIMQVSEVSDIEIYGREDQIKYGISCNLGSLNIATVMENKRIKEAVTTAMRSLTVV 435

Query: 636 IDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D+     +   +K+N    ++GLG M     L    I Y S EA++  +     ++F++
Sbjct: 436 SDLTNIAMVPSVQKANKELHSVGLGAMNLHGFLTKNFIMYESKEALDFCNVFFMMVNFYS 495

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL------AEVRDELAMNRTSRLPWD 747
           I +S+E+A+E+   +  F+ S +  G +    I            +    M   +   W 
Sbjct: 496 IQSSMEIAKEKKETFVGFEKSEYANGNYFSQYIAKDILPVNDKIAKLFEGMAIPTAEDWK 555

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L   VK  G+ ++  +AIAP  + + I   + S+ P    + V+            +L 
Sbjct: 556 QLMANVKEFGLYHAYRLAIAPNQSTSYIMNATASVMPVVDVIEVREYGDSTTYYPMPYLD 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                   + +A+++D   ++   S  QK +
Sbjct: 616 ND-------------------------------NYFFYKSAYDMDQKNVLRLISVIQKHV 644

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           DQ  S  L+ + + + + +   Y  A  MGLK+ YY R+R A+  E
Sbjct: 645 DQGISTILHTNTKDNTRDIAKYYIYAHKMGLKSLYYTRTRKASIDE 690


>gi|167578702|ref|ZP_02371576.1| ribonucleotide reductase system [Burkholderia thailandensis TXDOH]
          Length = 843

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 143/655 (21%), Positives = 253/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                    + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G   AL +L + Y + E  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDALVMLGLRYDAQEGRDFAARVARVMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA ERGA+  F  S +                   L     +    D++++ ++ 
Sbjct: 412 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIQEAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +  +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609


>gi|297618137|ref|YP_003703296.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145974|gb|ADI02731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 571

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 154/659 (23%), Positives = 257/659 (38%), Gaps = 98/659 (14%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
               G ++   RY +    G+  E       R+A  +A  E E  +    F  ++    F
Sbjct: 2   LSADGQKLFEARYAIRDEKGTVAETFDQAVGRLARTVATAEKEPSQWEERFARIIGELFF 61

Query: 352 MCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           + STP   N G      Q ++CF+  + D L  +F  L++ A++ K  GG+G +++ +R 
Sbjct: 62  VPSTPIWANVGKPDRPWQPAACFVLPLEDSLESVFETLKDTALVFKSGGGVGYNFSAIRP 121

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            G  +  + G++ GV+  L++ +  A  + QGG R+GA    L   H ++ EF+  +   
Sbjct: 122 RGFPVRSSQGQAFGVVELLRLYDHAAGIIVQGGVRRGACMGILNADHPEILEFIRAKLAG 181

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G       + N +  + D FM+ V +N  W L    +                       
Sbjct: 182 G-----LANFNLSVGVGDAFMEAVRENGTWRLVFNGQAIA-------------------- 216

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                    ++ A  +W  ++      G P + F D    RS      V+ ++N C E+ 
Sbjct: 217 ---------ELPAAEVWEAIVEASHACGEPGLVFLDAL-QRSNPIRGTVIAATNPCGEVP 266

Query: 590 LNSSSEETAVCNLGSINLL-AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
           L +       C LGSINL     A       +LA T+  AVR LDN+ID+  + +    +
Sbjct: 267 LLAG----ESCILGSINLAPMVDAAGNLKEVQLAETVGIAVRFLDNLIDVGQYPLTFIAQ 322

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           +    R IG+G  G   AL    + Y S E    AD +   I   A  AS ELA+E+GA+
Sbjct: 323 TTRATRRIGVGFTGLADALIKSGLAYDSEEGRAWADRAAAIIKAAAEEASRELAREKGAF 382

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             +  S++    +P D                                  RN+  +++AP
Sbjct: 383 PWWGRSVY----YPDDP--------------------------------RRNAALLSVAP 406

Query: 769 TATIANICGVSQ-SIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           T ++  I       I+P +   Y KS   +G   V +   + E ++  +     +     
Sbjct: 407 TGSVTLIAACEGYGIEPIFAVAYTKSTSAAGKIEVFSPLFLQECERHGI--PETVRSEVA 464

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
             GS   ++ IP D+ ++   A EI P   +   +  QK +D A S  + L  E +   +
Sbjct: 465 RRGSCQGVDGIPADMARVFKGAREIAPEDHLLMQAAVQKHVDNAVSKTVNLPREATPADV 524

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           D  +R AW +GLK     R  +              K   V V             + C
Sbjct: 525 DHTFRLAWELGLKGVTVFREGA--------------KPAPVTVGAGEPEEPPEAHRNCC 569


>gi|159037049|ref|YP_001536302.1| vitamin B12-dependent ribonucleotide reductase [Salinispora
           arenicola CNS-205]
 gi|157915884|gb|ABV97311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinispora arenicola CNS-205]
          Length = 962

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 127/621 (20%), Positives = 227/621 (36%), Gaps = 28/621 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E  A E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 111 GYFATPADAEIFAHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILD 170

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 171 WYKEEGLIFKGGSGSGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF+  +    D  R   D      +    +  V           
Sbjct: 230 RAAKMVILDVDHPDIEEFVVTKAREEDKVRALRDAGFDMDLGGTDIVSVQYQNANNSVRV 289

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G  F++          R +  V   I A  L+R +    +E   P + + 
Sbjct: 290 TDEFMAAVQSGGTFDLR--------GRLDGTVIDTIDAKPLFRTISQAAWECADPGLQYD 341

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
           D  N        G + +SN C+E        + + CNL S+NL+    ++  F+  K   
Sbjct: 342 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMRFLRSDGGFEVAKFVR 397

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I       EK   +   +R +G+G     + L    +PY+S +   +A
Sbjct: 398 SVELVITAMDISICFADFPTEKIGATTRAYRQLGIGYANLGALLMASGLPYSSDQGRSLA 457

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739
                 ++  A   S ELA   GAY  +  +                E++       A+ 
Sbjct: 458 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPSGTVATAVQ 517

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           R +   W    K     G RNS    +APT TI  +    +  ++P    + + K    G
Sbjct: 518 REATRQWSLGNKIGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 577

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852
              +VN  +   L+     +E + + +      G + +   +  +   +   A     I 
Sbjct: 578 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIAEHGHVVDAPGLKPEHYPVFDCAMGERSIA 637

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q +I  A S  + + E  + + ++ IY + W +GLK     R       
Sbjct: 638 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYRDNCKVGQ 697

Query: 912 EKSTLKGVDGKLNAVPVTDPN 932
             S  K       +V      
Sbjct: 698 PLSVAKKDRNAAVSVESVPAA 718


>gi|259500783|ref|ZP_05743685.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
 gi|302190766|ref|ZP_07267020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners AB-1]
 gi|259167477|gb|EEW51972.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
          Length = 725

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +       + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I ++  K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|238762670|ref|ZP_04623639.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
 gi|238698975|gb|EEP91723.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           kristensenii ATCC 33638]
          Length = 693

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 172/712 (24%), Positives = 288/712 (40%), Gaps = 77/712 (10%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +              +EEG   + + E     
Sbjct: 16  DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLERYDFS 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA     
Sbjct: 63  FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALTLAAG--- 119

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
            ++ A +    + S  F  +TPT  N G +   +L SCFL  + D++  I  ++     L
Sbjct: 120 NQQVARDLVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    T +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 180 SKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP +V  ++ +
Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVERVYGV 299

Query: 514 YG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                     Y          + K    I A   ++ +  + FE+G+P++ F+D  N  +
Sbjct: 300 PMSEISVSEKYREMVDDKRIRKSK----IKAREFFQILAEIQFESGYPYMMFEDTVNRAN 355

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLAST 624
           P    G ++ SNLC+EI   +S  E         +    S NL +       D      +
Sbjct: 356 PI--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAQTMDSPDFGKS 413

Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           I TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S EA++  
Sbjct: 414 IETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFT 473

Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA 737
           +     +++HAI AS +LA ER   +  F  S +  G +             A+VR   A
Sbjct: 474 NIYFYTVAYHAIRASNQLAIERGSHFKGFDQSTYASGHYFNKYTEQSWQPKTAKVRSLFA 533

Query: 738 MNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
               S   +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++  
Sbjct: 534 EAGISVPNQQDWVALRQSVMAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKE 593

Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G       ++ N+                                 + +  A++I P
Sbjct: 594 GKIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGP 622

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 623 EKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674


>gi|227112967|ref|ZP_03826623.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 693

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 166/679 (24%), Positives = 278/679 (40%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +EEG     + +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 40  EKLRYLVEEGYYEADVLDQYSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 99

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA         A    + + S  F  +TPT  N G +   +L S
Sbjct: 100 RYLERYEDRVCLVALTLA---KGDTALASALVDEIISGRFQPATPTFLNCGKKQRGELVS 156

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+
Sbjct: 157 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 216

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 217 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 276

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +    N    LFSP    D+  +YG          +      + ++ +  I A   ++ +
Sbjct: 277 QLAKNNQVMYLFSP---YDVEQVYGVPLSEISVTEKYHEMVNDKRIRKSQIKAREFFQIL 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P++ F+D  N  +P    G ++ SNLC+EI               S   + 
Sbjct: 334 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+     +          T+  A+R L  V D+ +  ++   +K N    AI
Sbjct: 392 ISCNLGSMNIANAMTSP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L    I Y + EAV+  +     ++FHAI AS  LA E    +S F+ S 
Sbjct: 447 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 506

Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    I    E          ++  ++  ++  W  L++ V   G+ N N  A+ 
Sbjct: 507 YATGEYFDKYIEQTWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N+                 
Sbjct: 567 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMSND----------------- 609

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           + +  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 610 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 655

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 656 NKAQIYAWTKGIKTIYYIR 674


>gi|319899231|ref|YP_004159324.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           clarridgeiae 73]
 gi|319403195|emb|CBI76754.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           clarridgeiae 73]
          Length = 708

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 170/689 (24%), Positives = 283/689 (41%), Gaps = 66/689 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  V+       + + +D  ++    K    F F    +LG 
Sbjct: 40  LQHVNQNTVFFHNLKEKIDYLVEENYYERELFELYDFSFIKKLFKRAYAFKFRFPTFLGA 99

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +    RV +         +  A    + +    F  +TP
Sbjct: 100 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGNKVLAEGLVDEIIIGRFQPATP 156

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I 
Sbjct: 157 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 216

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GV+P +K+  D     NQ G R+GA   YL   H+D+ +FLD ++   D++ R
Sbjct: 217 KIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 276

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFS     D+  + GK F         ++     K
Sbjct: 277 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNSK 333

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +  +KISA   ++ +  + FE+G+P+I F+D  N  +     G +  SNLCTEI      
Sbjct: 334 IRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRANSI--AGRISMSNLCTEILQVSEA 391

Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646
               +     AV N  S NL +       + +    T+  AVR L  V D+ N   +   
Sbjct: 392 SELETDLTYRAVGNDISCNLGSMNIAKAMESNDFGKTVEIAVRALTAVSDMSNIACVPSI 451

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-R 705
            K N    AIGLG M     L    I Y +PEA++  +     +++HA+ AS  +A+E +
Sbjct: 452 AKGNAESHAIGLGQMNLHGFLARERIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERQ 511

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIG 757
             +  F+ S +  G F    I    + + EL         +   S+  W ELK+ V   G
Sbjct: 512 KMFVGFERSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPSQKDWQELKQLVTQYG 571

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816
           + N    A+ PT +I+ I   + SI P    + ++     G       ++ N        
Sbjct: 572 LYNRYLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 624

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                     + +  A+EI P  +I++ +   + +DQ  SL L+
Sbjct: 625 ------------------------NLEFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLF 660

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             +  + + ++     AW  G+K+ YY+R
Sbjct: 661 FPDTATTRDINRAQIYAWKKGIKSIYYVR 689


>gi|284046866|ref|YP_003397206.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Conexibacter woesei DSM 14684]
 gi|283951087|gb|ADB53831.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Conexibacter woesei DSM 14684]
          Length = 963

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 126/658 (19%), Positives = 235/658 (35%), Gaps = 76/658 (11%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEK---------EKRAVEFYNLLSSFHF 351
              +   +N +  E   +    RVA  +A    ++         +    E  ++L     
Sbjct: 76  QKYFRGQLNTAARERSVRQMIGRVAGTIATWGRQRGYFATREDGDVFEAELTHILLHQLA 135

Query: 352 MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             ++P  FN G    PQ S+CF+ +V D +  I G   +   + +   G G + + +RG 
Sbjct: 136 AFNSPVWFNVGFEEQPQCSACFILSVEDTMESILGWNTKEGNIFRGGSGSGINLSNIRGS 195

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNT 469
              +    G + G + F++ A+  A  +  GGK R+ A    L+  H DV+EF+  +   
Sbjct: 196 MEPLRK-GGTASGPVSFMRGADSWAGTIKSGGKTRRAAKMVVLDVDHPDVQEFIWCKAKE 254

Query: 470 GDD-------------------RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            D                      +  + N +  + D FM+ V +   W           
Sbjct: 255 EDKAEALRNAGFDMSIDGDGFTSIQYQNANNSVRVSDAFMQAVEKGEDW----------- 303

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                               R +    + + A  L R++    +    P + +    N  
Sbjct: 304 ----------------DLIARTDGSAVKTVDARELMREIAEAAWRCADPGVQYDTTINQW 347

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAV 629
               + G +++SN C+E        + + CNL S+NL+     +  FD       +    
Sbjct: 348 HTSPNSGRINASNPCSEYMHV----DDSACNLASLNLMKFRRPDGTFDVANFEHAVDVVF 403

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
              + V+  + +  E   K+ +  R +GLG     + L    +PY S      A      
Sbjct: 404 LAQEIVVGASSYPTEGIAKNANAFRQLGLGYANLGAYLMSNGMPYDSDAGRGTAAAITAL 463

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLP 745
           ++  A   S E+A   G +  +  +                 +     D+  +   SR  
Sbjct: 464 MTGRAYQRSAEIAGAVGTFERYAENREPHNAVMRMHRDASYAIPNASCDDDGLLTASRRV 523

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVN 803
           WD+  +  +  G RN+    +APT TI+ +    +  ++P +  + + +    G  T+VN
Sbjct: 524 WDDAVELGEKNGYRNAQATVLAPTGTISFLMDCDTTGVEPDFSLVKFKELVGGGQMTIVN 583

Query: 804 SFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATA---FEIDPMWLIE 858
             +   L+     DE +  I        +I     +  +   +   A     I  M  I+
Sbjct: 584 RTVPLALQTLGYSDEQVEQIESHINDASTIVGAPGLAAEHLPVFDVAVGERAISHMGHIK 643

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
                Q +I  A S  + L +  + + +   Y QAW +G+K     R  S T+    T
Sbjct: 644 MMGAVQPFISGAISKTVNLPQTATVEDIADAYLQAWRLGVKALAIYRDGSKTAQALRT 701


>gi|325912229|ref|ZP_08174626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 143-D]
 gi|325475888|gb|EGC79057.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 143-D]
          Length = 725

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 184/754 (24%), Positives = 311/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +  K    + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKIKPNTKKFKS-FQERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I +   K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNTNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|196040726|ref|ZP_03108025.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus NVH0597-99]
 gi|196028516|gb|EDX67124.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus NVH0597-99]
          Length = 682

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|317049231|ref|YP_004116879.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp.
           At-9b]
 gi|316950848|gb|ADU70323.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           At-9b]
          Length = 712

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 174/707 (24%), Positives = 286/707 (40%), Gaps = 64/707 (9%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
            R   EK          +     T         E     + EG     +        L  
Sbjct: 28  GRIQFEKDHEATHQFFLQHVAPNTVPFASA--AERLRYLVAEGYYEAEVLNQYDFNFLCQ 85

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338
           L ++          +LG    Y  Y L   +G R  E  +     VA+ LA      E  
Sbjct: 86  LHDEADAWGFRFHTFLGAWKFYTSYTLKTFDGKRYLESFEQRACMVALTLA---RGNEAL 142

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A E    + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 143 ARELLAEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 202

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   +L   H 
Sbjct: 203 GGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVWLNAHHP 262

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP    D+  +YGK 
Sbjct: 263 DILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRLAKENREMALFSP---YDVERIYGKA 319

Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F     +        + ++ +  I     ++ +  + FE+G+P+I ++D  N        
Sbjct: 320 FGDISISEHYDEMLADDRIRKTFIQPRDFFQTLAEIQFESGYPYIMYEDSVNR--SNPIA 377

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E              S NL +    +  D   LA T+  AV
Sbjct: 378 GRINMSNLCSEILQVNSASEFHDDLSYRRVGKDISCNLGSLNIAHAMDSRNLAQTVEVAV 437

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+   +++    + N    AIGLG M     L    + Y S EA++  +    
Sbjct: 438 RALTAVSDMSEINSVPSVAEGNRRSHAIGLGQMNLHGYLAREGMAYGSAEALDFTNLYFY 497

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMN 739
            +++HA+  S  LAQER  ++  F+ S +  G +         + R         +  + 
Sbjct: 498 CVTYHAVRTSNLLAQERKQSFDGFEKSTYASGAYFDKYSERAWQPRTARVAQLFADAGIA 557

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             S+  W  L+  V T G+ N N  AI PT +I+ I   + SI P    + ++    +G 
Sbjct: 558 LPSQADWQALRDAVMTHGLYNQNLQAIPPTGSISYINHATSSIHPIVSRIEIRKEGKTGR 617

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N+                       N++         +  A++I P  +I+
Sbjct: 618 VYYPAPFMTND-----------------------NLDF--------YQDAYQIGPEAIID 646

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+R
Sbjct: 647 TYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYIR 693


>gi|294815514|ref|ZP_06774157.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443865|ref|ZP_08218599.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328113|gb|EFG09756.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 961

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E F++ +    +  R   D      +                 + +    ++D 
Sbjct: 243 VDHPDIEGFIETKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           + +  E       R    GEI    ++ A AL+RKM    +    P I + D  N     
Sbjct: 297 FMRAVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTC 354

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+         N  FD ++ A  +   
Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLTDDGEGNQSFDVERFAKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     IA     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISS 470

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  +   S ELA   G Y  +  +                       ++      +  
Sbjct: 471 LMTGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RN+    IAPT TI       +  ++P    + + K    G   +V
Sbjct: 531 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++     E + + +      G++ +   +  +  ++   A     I  M  +
Sbjct: 591 NGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAPGLKTEHYEVFDCAMGERSISAMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + + E  + ++++ IY +AW MG+K     R         S  
Sbjct: 651 RMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 710

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
                +      T+         +  
Sbjct: 711 TKEKEQDGIAEKTEDTIRAAVEKVIE 736


>gi|254391044|ref|ZP_05006252.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197704739|gb|EDY50551.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 965

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 128 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 187

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 188 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 246

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E F++ +    +  R   D      +                 + +    ++D 
Sbjct: 247 VDHPDIEGFIETKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 300

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           + +  E       R    GEI    ++ A AL+RKM    +    P I + D  N     
Sbjct: 301 FMRAVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTC 358

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+         N  FD ++ A  +   
Sbjct: 359 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLTDDGEGNQSFDVERFAKVVELV 414

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     IA     
Sbjct: 415 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISS 474

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  +   S ELA   G Y  +  +                       ++      +  
Sbjct: 475 LMTGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE 534

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RN+    IAPT TI       +  ++P    + + K    G   +V
Sbjct: 535 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 594

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++     E + + +      G++ +   +  +  ++   A     I  M  +
Sbjct: 595 NGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAPGLKTEHYEVFDCAMGERSISAMGHV 654

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + + E  + ++++ IY +AW MG+K     R         S  
Sbjct: 655 RMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 714

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
                +      T+         +  
Sbjct: 715 TKEKEQDGIAEKTEDTIRAAVEKVIE 740


>gi|194014861|ref|ZP_03053478.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
 gi|194013887|gb|EDW23452.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
          Length = 700

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 155/674 (22%), Positives = 280/674 (41%), Gaps = 59/674 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312
           E     IE               D+  +      ++     ++     Y+ Y L  N   
Sbjct: 53  EKIDYLIENDYYEEEFLRQYSMADIKEVFEAAYAKKFRFPSFMSAFKFYNDYALKTNDKK 112

Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370
             +E  +     VA+  A  + EK   A+EF  L+ +  +  STPT  N+   R  +L S
Sbjct: 113 KILERYEDRISVVALFFAGGDKEK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVS 169

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  V D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+
Sbjct: 170 CFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKL 229

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F+
Sbjct: 230 LDNAFRYADQMGQRQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFI 289

Query: 491 KRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           +   ++     F P  V   +   L   + E  Y   +   +  +IK  + ++   L  K
Sbjct: 290 ELAREDKTAYTFYPHTVYKEYGQHLDEMDMEEMY---DELVENPKIKKEK-VNPRKLLEK 345

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCN 601
           +  +  E+G+P+I F+D  N      H+  V  SNLC+E+   S         +E  +  
Sbjct: 346 LAVLRSESGYPYIMFQDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGL 405

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +    N      +  T++ A   L  V +  +       +K+N   ++IGLG 
Sbjct: 406 DISCNLGSLNIMNVMKNKSIEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGA 465

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    + Y S EA + A+     +++++I  S ELA+E+   +  ++GS +  G
Sbjct: 466 MNLHGYLAQNQMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATG 525

Query: 720 VFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            +       D      +       M+  ++  W  LK  V   GM +S  + IAPT +I+
Sbjct: 526 EYFNKYVENDFTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSIS 585

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            +   + S+ P  + +  ++  +         L                       S  N
Sbjct: 586 YVQSATASVMPIMERIEERTYGNSKTYYPMPGL-----------------------SAQN 622

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
                      +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I   A
Sbjct: 623 --------WFFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYA 674

Query: 893 WLMGLKTTYYLRSR 906
              G+KT YY R++
Sbjct: 675 HHKGIKTLYYARTK 688


>gi|76803442|ref|YP_327711.1| ribonucleotide-diphosphate reductase subunit alpha [Natronomonas
           pharaonis DSM 2160]
 gi|76559257|emb|CAI50864.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 564

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 154/601 (25%), Positives = 251/601 (41%), Gaps = 109/601 (18%)

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
            +  A  FY+ +S   +  ++P   N G       SCF + + D +  I     E   + 
Sbjct: 58  DDGFADRFYDYMSRGFYSLASPVWSNFGLDRGLPISCFGSYMEDSMESILYTQAEVGEMT 117

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG    +  +R  G+ I   NGKS G   F ++ +     V+QG  R+G    Y++ 
Sbjct: 118 KLGGGTSGYFGEIRPRGSPI-TNNGKSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDV 176

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+EE+L+++     +     D+     I D + + +                     
Sbjct: 177 EHDDLEEWLNIKT----EGDPVQDIYYGVIIGDDWFQAMVDGDE---------------- 216

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
               E                          W +++      G P+I F+D  N   PQ 
Sbjct: 217 ----EKR----------------------ETWAEIIEARINIGVPYIIFRDNMNEGKPQV 250

Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           +      +++SNLCTEI L ++ +E+ VC L S+N L +      D       + T  R 
Sbjct: 251 YKDKGYEINASNLCTEIALPATPDESFVCCLSSMNALHYGEWKDTD------AVETLTRF 304

Query: 632 LDNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           LD V++           +E+  +    HRAIG+G++G+ S L    IP+ S EA++  +E
Sbjct: 305 LDAVMEEFIEEAEGTQFMERPVRFAKRHRAIGIGVLGWHSYLQSEMIPFDSMEAMKKNEE 364

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
               I   +   S  LA E G     +G                                
Sbjct: 365 IFRTIRERSYEESRRLADEFGEPEVLEG-------------------------------- 392

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                      G RN+  M++APT + + I G VS SI+P   N +V+       T  N 
Sbjct: 393 ----------YGRRNTTTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNR 442

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           FL   LKQR   +  +   +   DGS+ +++ + D+ K+I  T  EI  M +I  A++RQ
Sbjct: 443 FLEAILKQRGRDEREVWDSIAQQDGSVQHLDCLTDEEKEIFKTFAEIPQMAIINQAAQRQ 502

Query: 865 KWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           K+IDQAQSLN+ +   E S K+++ +Y +AW  G+K+ YY  S +A   +K +   ++ K
Sbjct: 503 KYIDQAQSLNISIDPSEVSVKEINQLYIEAWRKGVKSLYYQNSVNA--AQKFSRDILECK 560

Query: 923 L 923
            
Sbjct: 561 A 561


>gi|228945049|ref|ZP_04107410.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814718|gb|EEM60978.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 682

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|239991245|ref|ZP_04711909.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 11379]
          Length = 965

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 128/715 (17%), Positives = 240/715 (33%), Gaps = 60/715 (8%)

Query: 273 MMDFDLVYLANDLKYERD--FAFEYLGLQ-------ILYDRYFLHINGSRIEMPQ----- 318
             + +       +   RD    FE  G++          +          +  PQ     
Sbjct: 37  YDEVEWERRDVVMTNWRDGSINFEQRGVEFPDFWSVNAVNIVTSKYFRGAVGTPQRETGL 96

Query: 319 -AFFMRVAMGLALKETEK---------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQ 367
                R+         +          E    E    L    F  ++P  FN GT    Q
Sbjct: 97  KQLIDRIVKTYRKAGEDNNYFASPADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQ 156

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           +S+CF+  V D +  I    +E  M+ K   G G + + +R     +    G + G + F
Sbjct: 157 VSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSF 215

Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R   D        
Sbjct: 216 MRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIRALRDAGF----- 270

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVA 544
                 +            + ++       EF  A E+  +   R  +   V  ++ A +
Sbjct: 271 -----DMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRARMTGDVIEEVEAKS 325

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           L+RKM    +    P I + D  N        G ++ SN C+E        +   CNL S
Sbjct: 326 LFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH----LDNTSCNLAS 381

Query: 605 INLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+         N  F+ ++ A  +   +  +D  I       +K  ++    R +G+G
Sbjct: 382 LNLMKFLKDDGLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGENTRAFRQLGIG 441

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
                + L      Y S     +A      ++  +   S ELA   G Y  +  +     
Sbjct: 442 YANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPYDGYARNAEPHQ 501

Query: 720 VFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                     A+       +  +   +   W ++ +     G RN+    IAPT TI   
Sbjct: 502 RVMKQHADANAKAVHIDDLDSPVWAAATEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLA 561

Query: 776 CGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSI 831
               +  ++P    + + K    G   +VN  +   L++     E + + +     +G++
Sbjct: 562 MSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQPEQIEAIVAHIAENGNV 621

Query: 832 GNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
            +   +  +  ++   A     I  M  +   +  Q WI  A S  + L E  + + ++ 
Sbjct: 622 VDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVNLPESATVEDVEE 681

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +Y +AW MG+K     R         S       K       +         +  
Sbjct: 682 VYFEAWKMGVKALAIYRDNCKVGQPLSAKTKEKEKEEVTAKAEETIREAVEKVVE 736


>gi|227876444|ref|ZP_03994556.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|269976012|ref|ZP_06183016.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris 28-1]
 gi|306817403|ref|ZP_07451148.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           mulieris ATCC 35239]
 gi|307700430|ref|ZP_07637469.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris FB024-16]
 gi|227842985|gb|EEJ53182.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|269935840|gb|EEZ92370.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris 28-1]
 gi|304649844|gb|EFM47124.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           mulieris ATCC 35239]
 gi|307614415|gb|EFN93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus
           mulieris FB024-16]
          Length = 733

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 164/703 (23%), Positives = 275/703 (39%), Gaps = 65/703 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E     +             L  +      E   +   + +   +F          +  +
Sbjct: 58  EAARQFFVNHVNPNTVSFNTLQEKIDYLVTEGYYEKETIDQYRFEFIKSLFQKAYAH--N 115

Query: 291 FAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
           F F  +LG    Y  Y L   +G R  E  +    RV M         E  A +    + 
Sbjct: 116 FRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLGRGDETLATDIMEEII 172

Query: 348 SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TPT  N+G +   ++ SCFL  + D++  I   L     L+K  GG+    T 
Sbjct: 173 TGRYQPATPTFLNAGKKARGEMVSCFLVRIEDNMESIARGLNSALQLSKRGGGVALLLTN 232

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I     +S GV+P +K+  D     NQ G R+GA   YL  +H D+  FLD +
Sbjct: 233 LREAGAPIKRIQNQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYLNAFHPDIMSFLDTK 292

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENY 525
           +   D++ R   ++    IPD+  +         LFSP    D+  +YG  F        
Sbjct: 293 RENADEKIRIKTLSLGVVIPDIAFELAKNKEPMYLFSP---YDIERVYGVPFSEISVTEK 349

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            R+         ++I A   ++ +  + FE+G+P+I ++D  N  +P    G +  SNLC
Sbjct: 350 YRELVDNPQIHKKQIDARKFFQTLAEIQFESGYPYILYEDTVNRANPI--DGRIVMSNLC 407

Query: 586 TEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI         N       V    S NL +       D      +IR A+R L  V D+
Sbjct: 408 SEILQVSEASELNPDLSYQKVGKDISCNLGSMNIAKTLDSPDFEQSIRVAIRALTAVSDL 467

Query: 639 NC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                +   ++ N    A+GLG M     L    I Y SPE ++  +      +F+A+ A
Sbjct: 468 TNVECVPTIQRGNAMSHAVGLGAMNLHGCLARHEIFYGSPEGLDFTNMYFYATAFYALKA 527

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDE 748
           S ELA ER   +  F+ S +  G +    I    E +         + ++   +   W  
Sbjct: 528 SHELAVERGQRFEGFERSQYATGEYFEKYINETWEPKTAKVREIFAQSSVKLPTTEDWRR 587

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLV 807
           L + ++  GM N N  AI PT +I+ I   + SI P    + ++     G       ++ 
Sbjct: 588 LAEAIQRDGMYNQNLQAIPPTGSISYINNSTASIHPVASKIEIRKEGKIGRVYYPAPYMT 647

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                 + +  A+EI    +I++ +   + +
Sbjct: 648 ND-------------------------------NLEYYQDAYEIGYEKIIDTYAEATQHV 676

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           DQ  SL L+  +  + + ++     AW  G+K+ YY+R R A 
Sbjct: 677 DQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQAA 719


>gi|312871261|ref|ZP_07731359.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|312874780|ref|ZP_07734799.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311089525|gb|EFQ47950.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311093275|gb|EFQ51621.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 3008A-a]
          Length = 725

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 183/754 (24%), Positives = 311/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +       + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I ++  K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|262198687|ref|YP_003269896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliangium ochraceum DSM 14365]
 gi|262082034|gb|ACY18003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliangium ochraceum DSM 14365]
          Length = 963

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 141/785 (17%), Positives = 269/785 (34%), Gaps = 95/785 (12%)

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK- 286
           L + V         +    E +    +    +           +   + +       +  
Sbjct: 2   LHKVVGNERETNMSETKQAESKRARAQDRPGFEVSRYFTSEGVDPYSEVEWELRDATITG 61

Query: 287 -------YERDFAFEYLGLQILYDRYFLHINGSRIEMPQ------AFFMRVAMGLALK-- 331
                   ++   F     Q   +          +  P+          RVA  +     
Sbjct: 62  ANGKVYFEQKQVEFPKAWSQTATNVVVQKYFRGTVGTPERERSVKQMIGRVADTIFGWGR 121

Query: 332 -------ETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGI 383
                  + +  +   E  +LL +     ++P  FN      PQ S+CF+ +V D +  I
Sbjct: 122 KDGYFRSDKDAWRFRDELVHLLVNQKMAFNSPVWFNVGVETEPQCSACFINSVDDSMSSI 181

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
               +   ML KY  G G++ + +R    ++HG  G + G + F++  +  A A+  GGK
Sbjct: 182 LTLARTEGMLFKYGSGTGSNLSSLRSSAENLHG-GGTASGPVSFMRGFDAFAGAIKSGGK 240

Query: 444 -RKGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNT 481
            R+ A    L+  H D+ +F++ +                          D     + N 
Sbjct: 241 TRRAAKMVILDAEHPDIVDFVECKAKEEQKAWALIDAGYDGGFNEPGGAYDSVNYQNANH 300

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D FM+ V  ++ WT  +  +  D+H                            + 
Sbjct: 301 SVRVSDSFMQAVVDDSSWTTHAVLDGRDIH---------------------------TMP 333

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  L RK+       G P + F    N  +P      +++SN C+E        + + CN
Sbjct: 334 ARELMRKIADAAHLCGDPGMQFDSTINDWNPCIGTARINASNPCSEYMF----LDDSACN 389

Query: 602 LGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L S+NL    + +  FD +     I      ++ ++D   +   K  +++H  R +GLG 
Sbjct: 390 LASLNLRRFQSEDGNFDVEAYKHAIEITTLAMEIIVDNASYPTPKIGENSHRFRPLGLGY 449

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQG 719
               + L    +PY S      A      +   A   S  +A +  G ++ +  +     
Sbjct: 450 ANLGALLMSRGLPYDSEPGRAYAAALTAILCGQAYRTSARIAADATGPFAGYDENREPFL 509

Query: 720 VFPIDSIGLLAE---VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                    +A+         +   +R  W+++ +  +  G RN+    +APT TIA + 
Sbjct: 510 RVMNKHRKAVADIDAALVPYDLMEAARGAWNDVVELGEKHGFRNAQTTVLAPTGTIAFLM 569

Query: 777 GV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIG 832
              +  ++P    + Y +    G   +VN  +   L++    ++ +   + + D   SI 
Sbjct: 570 DCDTTGVEPDIALVKYKRLVGGGMLKMVNQTVPEALRRLGYSEQQLEGIINHIDTQESIE 629

Query: 833 NIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
               + ++   +   AF        I  M  I   S  Q ++  A S  + L  + +   
Sbjct: 630 GTSVLKEEHLPVFDCAFRSPSGTRSIHYMGHIRMMSAVQPFLSGAISKTVNLPSDCTVGD 689

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           ++  Y QAW +GLK     R     +   ST K       A+  T   S    L  P   
Sbjct: 690 IEDAYLQAWKLGLKAIAVYRDGCKRTQPLSTSKQQATSNGAIAKTLSESDVLELLAPDER 749

Query: 945 TSDTE 949
               +
Sbjct: 750 AMIED 754


>gi|154686151|ref|YP_001421312.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           amyloliquefaciens FZB42]
 gi|154352002|gb|ABS74081.1| NrdE [Bacillus amyloliquefaciens FZB42]
          Length = 700

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 156/696 (22%), Positives = 289/696 (41%), Gaps = 56/696 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E + + +             L  E     IE               D+  +      ++
Sbjct: 30  KEAVHSYFVDYINQNTVYFHDL-KEKLDYLIENQYYEEEFLSLYSFEDIKEVFKTAYAKK 88

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y+ Y L  N     +E  +    R+++          ++A E+ NL+ 
Sbjct: 89  FRFPSFMSAFKFYNDYALKTNDKKRILERYED---RISIVALFFANGDTEKAKEYVNLMI 145

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  STPT  N+   R  +L SCFL  V D L  I  A+  +  L+K  GG+  + + 
Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +
Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K + D+  R   ++    IPD F++   ++    +F P  +   +  +  E +     YE
Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMD-MTAMYE 324

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              D   +K  + ++A  L  K+  +  E+G+P+I F+D  N      HV  V  SNLC+
Sbjct: 325 ELVDNPRVKKEK-VNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFSNLCS 383

Query: 587 EITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           E+         +  +E     L  S NL +    N   +  +  T++ A   L +V +  
Sbjct: 384 EVLQASQVSAYTDYDEEDEIGLDISCNLGSLNILNVMKHKSIERTVKLATDSLTHVSETT 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +       +++N   ++IGLG M     L    I Y SPEA + A+     ++F++I  S
Sbjct: 444 DIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRS 503

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKK 751
            ELA+E+   +  ++GS +  G +    I        E        M+  +   W ELK 
Sbjct: 504 AELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFEGMHIPTIEDWKELKA 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            V   GM +S  + IAPT +I+ +   + S+ P  + +  ++  +               
Sbjct: 564 FVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP--------- 614

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                 +  +  +    +  A+++D   +++  +  Q+ IDQ  
Sbjct: 615 ----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQGI 652

Query: 872 SLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 653 SFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|319954719|ref|YP_004165986.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga
           algicola DSM 14237]
 gi|319423379|gb|ADV50488.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga
           algicola DSM 14237]
          Length = 595

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 156/650 (24%), Positives = 260/650 (40%), Gaps = 122/650 (18%)

Query: 294 EYLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
              G   L +     +N   +   E P+     +A             + +FY  +S  +
Sbjct: 36  SEPGFDWLTEHSRNFLNSGYLTDNETPEQRIREIADRAEKLLDMP-GFSDKFYGYMSDGY 94

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           +  ++P   N G       SCF + + DD+  I     E  M++K  GG    +  +R  
Sbjct: 95  YSLASPVWSNFGKERGLPISCFGSHIDDDMGNILYTQSEVGMMSKMGGGTSGYFGKIRHR 154

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA +   NG++ G +  +++       V+QG  R+G    YL   H D+ EFL++     
Sbjct: 155 GAEVKN-NGQASGAVHIMQLFESMVDVVSQGSVRRGRFSPYLPVEHPDISEFLEIGT--- 210

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
            +     ++     + + +M+ +                                     
Sbjct: 211 -EGNPIQELTHGVTVTNEWMQEMIDGDS-------------------------------- 237

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTE 587
                        A+W K+L    E G+P+I FKD  N       + +   +++SNLCTE
Sbjct: 238 ----------DKRAIWAKVLQRRGEMGYPYIFFKDNANNGAADVYKDNNHTIYASNLCTE 287

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
           I L S+   + VC L SIN+        +D  K    + T V  LD VI      +E  +
Sbjct: 288 IMLPSNDNWSFVCVLSSINV------MHYDKWKDTDAVETMVYFLDAVITEFLDKLEVYR 341

Query: 648 KS------------------NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            S                     +RA+GLG++G+ S L    +P+ S +A ++ +E    
Sbjct: 342 DSDRREDRQTFLFMERAYNFAKDNRALGLGVLGWHSLLQSEMLPFNSQKAYDLNNEIFRT 401

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I   +  AS ELA + G  +  KG                                    
Sbjct: 402 IKSKSYKASEELASKFGEPAVLKG------------------------------------ 425

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                  G RN+   A+APT + A I G VSQ I+P + N+YVK       T+ N FLV+
Sbjct: 426 ------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLVD 479

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            L+++      +   ++  DGS+ +++ + D  K++  T  EID + +I  A+ RQ  ID
Sbjct: 480 LLEEKGQNITEVWHSIRERDGSVQHLDFLSDLEKEVFKTYSEIDQLDIIYQAANRQNHID 539

Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           Q QS+N+ +  +   K+++ I+  AW +GLK+ YY  S +A    K    
Sbjct: 540 QGQSVNIIVHPDMPVKEINKIHVTAWKLGLKSLYYQHSMNAAQKFKQKKD 589


>gi|309807847|ref|ZP_07701779.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809738|ref|ZP_07703592.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325913648|ref|ZP_08176010.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 60-B]
 gi|329919792|ref|ZP_08276743.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 1401G]
 gi|308168949|gb|EFO71035.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169917|gb|EFO71956.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325477007|gb|EGC80157.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners UPII 60-B]
 gi|328937139|gb|EGG33567.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners SPIN 1401G]
          Length = 725

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +       + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I ++  K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|228938566|ref|ZP_04101174.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971445|ref|ZP_04132071.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978058|ref|ZP_04138437.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis Bt407]
 gi|228781719|gb|EEM29918.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis Bt407]
 gi|228788312|gb|EEM36265.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228821164|gb|EEM67181.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939075|gb|AEA14971.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 682

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++I+   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|309804069|ref|ZP_07698150.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|308163837|gb|EFO66103.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LactinV 11V1-d]
          Length = 725

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +       + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYINEKINPNTKKFKS-FQERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD+V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I ++  K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|227488206|ref|ZP_03918522.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091776|gb|EEI27088.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 718

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 172/739 (23%), Positives = 297/739 (40%), Gaps = 79/739 (10%)

Query: 193 LSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
           +S   L+   + +   L + +     +  +  AR    +   +     +   +K  +   
Sbjct: 13  MSGEQLDYHALNALLNLYDADGKIQFDKDRAAARQFFLQHVNQNTVFFHNLQEKLDY--- 69

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
                      ++     + + E      +  L +     +     +LG    Y  Y L 
Sbjct: 70  ----------LVDNDYYEKEVLEKYNFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLK 119

Query: 309 -INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366
             +G R  E  +     VA+ LA  +   E  A    + +    F  +TPT  NSG +  
Sbjct: 120 TFDGQRYLERFEDRVCMVALTLAAGD---ENLARNLVDEIILGRFQPATPTFLNSGKKQR 176

Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +  SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVI
Sbjct: 177 GEPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVI 236

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
           P +K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   ++    I
Sbjct: 237 PVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVI 296

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVA 544
           PD+  +   +N    LFSP    D+  +YGK F     +        + ++ +  I+A  
Sbjct: 297 PDITFELAKKNDDMYLFSP---YDVERVYGKAFADVSISEHYYEMVEDPRIHKTKINARH 353

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-- 602
            ++ +  + FE+G+P+I ++D  N  +P    G V  SNLC+EI   ++  E        
Sbjct: 354 FFQTLAEIQFESGYPYIMYEDTVNRANPI--EGRVTQSNLCSEILQVATPSEYNADLSYA 411

Query: 603 -----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656
                 S NL +       D    A+TI TA+R L  V +  +  ++   KK N    AI
Sbjct: 412 TVGEDISCNLGSLNIAMAMDSTDFATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAI 471

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG M     L   HI Y S EA++  +     + +  + AS ++A+ER   ++ F  S 
Sbjct: 472 GLGQMNLHGYLGREHIHYGSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSD 531

Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G F               +  + D   ++  +   W ELK+ V   G+ N    A+ 
Sbjct: 532 YASGAFFDRYDPAEFAPKTDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVP 591

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G        + N+                 
Sbjct: 592 PTGSISYINNSTSSIHPIASRIEIRKEGKIGRVYYPAPHMDND----------------- 634

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           +    A+EI    +I++ +   K++DQ  SL L+  +  S + +
Sbjct: 635 --------------NLEYFQDAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDI 680

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 681 NRAQIYAWTHGIKTLYYIR 699


>gi|125624346|ref|YP_001032829.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124493154|emb|CAL98118.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300071130|gb|ADJ60530.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 722

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 173/717 (24%), Positives = 297/717 (41%), Gaps = 85/717 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E    Y +     ++E        E      +  L  +L    
Sbjct: 32  KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 91  FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+   R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V      YGK F       E  
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 ++ +  I+A  L +++  +  E+G+P+I   D  N  +P    GV+  SNLC+E
Sbjct: 327 KMVANPEIRKTPINARELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    ++    D+  +++ + VR L  +
Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRALTFI 440

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +   T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ 
Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSI---------GLLAEVRDELAMNRTSRL 744
           + AS +LA E+  ++ +F+ S +  G +    +           + E+   +A+   +  
Sbjct: 501 LVASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTIA-- 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W EL+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +     G      
Sbjct: 559 DWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP- 617

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                      L  E +                        + +A++ D   +I+  +  
Sbjct: 618 --------AAGLATETI----------------------PYYKSAYDTDMRAVIDVYAAA 647

Query: 864 QKWIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 648 TEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|291295356|ref|YP_003506754.1| ribonucleoside-diphosphate reductase subunit alpha [Meiothermus
           ruber DSM 1279]
 gi|290470315|gb|ADD27734.1| ribonucleoside-diphosphate reductase, alpha subunit [Meiothermus
           ruber DSM 1279]
          Length = 691

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/685 (23%), Positives = 287/685 (41%), Gaps = 65/685 (9%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312
           E F   I+EG             DL+ L    +        ++ +   Y  Y L  +   
Sbjct: 46  ERFQALIQEGYYEDFF-ARYEAADLLRLYRLAESYPFRFQSFMAVSKFYKDYALKSDDKK 104

Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
             +E      + VA+ L   + +K +  V     +    +  +TPT  N+G     +L S
Sbjct: 105 LYLERYFERVLAVALHLGQGDVQKAEAYVR---AMMEQRYQPATPTFLNAGRARRGELVS 161

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D L  I   L     L+K  GG+  + + +R  G  I G    ++GV+P  K+
Sbjct: 162 CFLLELDDSLNSIGYNLNAAMQLSKIGGGVALNLSKLRARGEPIKGVAHAAKGVVPVAKL 221

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     +Q G+RKGA   YL  +H DVEEFLD +K   D++ R   ++    +P  F 
Sbjct: 222 LEDAFNYADQMGQRKGAGAVYLNIFHWDVEEFLDTKKINADEKSRLQTLSLGLLVPQKFF 281

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                   + +F+P  V      +  + +     YE      E+K  R +SA  +  ++ 
Sbjct: 282 DLAEAGEDFYVFAPYSVYRAFGEHLDDMD-LDRMYEALVAHPEVKK-RPLSARQMLTRIA 339

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETA 598
              FE+G+P+I ++   N + P + +G +  SNLCTEI    +                 
Sbjct: 340 QTQFESGYPYIVYRSNANRQHPLKALGQIKMSNLCTEIFQLQTPTLVGDAGEVVEAGFDI 399

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657
            CNLGS+N++            LA ++ TA+  L  V D +    +    ++N    ++G
Sbjct: 400 SCNLGSLNIVNVMEQ-----QNLAESVHTAMDALTAVSDASAVRQVPGVWRANQAFHSVG 454

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG+M     L    I Y S EA +        ++++++  S+E+A+ER   +  F+ S +
Sbjct: 455 LGVMNLHGFLAKNQIRYESEEARDFVRSFFAAMNYYSLERSMEIARERGQTFHGFEQSEY 514

Query: 717 DQG----VFPIDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
             G     +  D       VR     +   S   W  LK+ V+  G+ ++  +A+APTA+
Sbjct: 515 ASGRYFEKYQEDFRPRTETVRKLFEGIPLPSPADWARLKEAVEQHGLYHAYRLAVAPTAS 574

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ I   + SI P  +++  ++  +        FL                         
Sbjct: 575 ISYIQNATPSIQPIVEHVETRTYGNATTYYPMPFL------------------------- 609

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
                  ++    + +A+ ++   +I+  +  Q+ +DQ  S  L++  E S ++L  +Y 
Sbjct: 610 ------SEETYWFYKSAYHMNMYRVIDLVAEAQQHVDQGISTVLFVTSETSTRELARLYV 663

Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915
            A   GLK+ YY R+++ +  E  T
Sbjct: 664 YAAKKGLKSLYYTRTKNLSVEECLT 688


>gi|156312488|ref|XP_001617836.1| hypothetical protein NEMVEDRAFT_v1g8281 [Nematostella vectensis]
 gi|156196039|gb|EDO25736.1| predicted protein [Nematostella vectensis]
          Length = 294

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 187/294 (63%), Positives = 240/294 (81%), Gaps = 2/294 (0%)

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           SNLCTEITLN++  E AVCNLGS+NL+ H  NN+ +  KL  TI+TA+R+LDNV+DIN +
Sbjct: 1   SNLCTEITLNTNEREIAVCNLGSVNLVNHIENNEINVAKLEKTIKTAMRMLDNVVDINFY 60

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +EKAK SN  HR +GLG+MGFQ  LH+L IPYAS EAVE AD+SME IS++A SAS +L
Sbjct: 61  PVEKAKNSNLAHRPVGLGMMGFQDCLHMLRIPYASKEAVEFADKSMELISYYAFSASSKL 120

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMR 759
           A+E+G YSS+K SLWDQG+ P+DS+ LLA+ R    L ++ + +L WDEL+  +K  GMR
Sbjct: 121 AKEKGTYSSYKDSLWDQGILPLDSLKLLAKSRGAQYLDVDESKKLDWDELRSHIKEHGMR 180

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NSNC+AIAPTATIANI G+S SI+P+YQN++VKSN+SG+FTV+N FL+N+LK   LWDE 
Sbjct: 181 NSNCLAIAPTATIANIVGISASIEPTYQNIFVKSNLSGEFTVINDFLINDLKNEGLWDEV 240

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           M+SD+KY DGS+  I+RIPD LK+++ATAFE+DP WL+E+ASRRQKWIDQAQSL
Sbjct: 241 MLSDIKYFDGSLQQIDRIPDSLKQLYATAFEMDPKWLVEAASRRQKWIDQAQSL 294


>gi|75538786|sp|O54196|NRDJ_STRCL RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|3402271|emb|CAA12167.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           clavuligerus]
          Length = 961

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E F++ +    +  R   D      +                 + +    ++D 
Sbjct: 243 VDHPDIEGFIETKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           + +  E       R    GEI    ++ A AL+RKM    +    P I + D  N     
Sbjct: 297 FMRAVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTC 354

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+         N  FD ++ A  +   
Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLTDDGEGNQSFDVERFAKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     IA     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISS 470

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  +   S ELA   G Y  +  +                       ++      +  
Sbjct: 471 LMTGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RN+    IAPT TI       +  ++P    + + K    G   +V
Sbjct: 531 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++     E + + +      G++ +   +  +  K+   A     I  M  +
Sbjct: 591 NGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAPGLKTEHYKVFDCAMGERSISAMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + + E  + ++++ IY +AW MG+K     R         S  
Sbjct: 651 RMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 710

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
                +      T+         +  
Sbjct: 711 TKEKEQDGIAEKTEDTIRAAVEKVIE 736


>gi|157692409|ref|YP_001486871.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pumilus SAFR-032]
 gi|157681167|gb|ABV62311.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus
           pumilus SAFR-032]
          Length = 700

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 153/674 (22%), Positives = 279/674 (41%), Gaps = 59/674 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312
           E     IE               D+  +      ++     ++     Y+ Y L  N   
Sbjct: 53  EKIDYLIENDYYEEEFLRQYSMADIKEVFEAAYAKKFRFPSFMSAFKFYNDYALKTNDKK 112

Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370
             +E  +     VA+  A  +  K   A+EF  L+ +  +  STPT  N+   R  +L S
Sbjct: 113 KILERYEDRISVVALFFAGGDKAK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVS 169

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  V D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+
Sbjct: 170 CFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKL 229

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F+
Sbjct: 230 LDNAFRYADQMGQRQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFI 289

Query: 491 KRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           +   ++     F P  V   +   L   + E  Y   +   +  ++K  + ++   L  K
Sbjct: 290 ELAREDKTAYTFYPHTVYKEYGQHLDEMDMEEMY---DELVENPKVKKEK-VNPRKLLEK 345

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCN 601
           +  +  E+G+P+I F+D  N      H+  V  SNLC+E+   S         +E  +  
Sbjct: 346 LAVLRSESGYPYIMFQDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGL 405

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +    N      +  T++ A   L  V +  +       +K+N   ++IGLG 
Sbjct: 406 DISCNLGSLNIMNVMKNKSIEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGA 465

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    + Y S EA + A+     +++++I  S ELA+E+   +  ++GS +  G
Sbjct: 466 MNLHGYLAQNQMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATG 525

Query: 720 VFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            +       D      +       M+  ++  W  LK  V   GM +S  + IAPT +I+
Sbjct: 526 EYFNKYVENDFTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSIS 585

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            +   + S+ P  + +  ++  +         L                       S  N
Sbjct: 586 YVQSATASVMPIMERIEERTYGNSKTYYPMPGL-----------------------SAQN 622

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
                      +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I   A
Sbjct: 623 --------WFFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYA 674

Query: 893 WLMGLKTTYYLRSR 906
              G+KT YY R++
Sbjct: 675 HHKGIKTLYYARTK 688


>gi|307244662|ref|ZP_07526766.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492043|gb|EFM64092.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 702

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 162/708 (22%), Positives = 280/708 (39%), Gaps = 66/708 (9%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            +L +  E L    +        + + +  +     ++     + + +      +  L  
Sbjct: 20  YQLHKDKEALDLYLRDSIDGRSMKFESISDK-IKYLVDNNYYEKEIIDKYSMDFIGDLHE 78

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            +K        Y+     Y+ Y L  +     +E      +  ++ +A       + A +
Sbjct: 79  YIKSFGFSFQSYMSASKFYENYALKSDDGEYILEDYNDKILICSLAIA---NGDTEVAKK 135

Query: 342 FYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               L    F  +TPT  N    R  +L SCFL TV D   GI  A+     L+K  GG+
Sbjct: 136 VAKRLIRQEFQPATPTFLNLGRKRAGELVSCFLLTVEDSCEGISYAVASANHLSKIGGGV 195

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + T +R     I G  G S GV+   K+   +    NQ G R+GA   YL   H D +
Sbjct: 196 ALNLTRLRARAESIKGIEGASGGVVGVAKMLEQSFSYFNQMGARQGAGAVYLNVLHADFD 255

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEF 518
             +D +K   D+R R   ++    IPD+FM+   +N     F P  +   +   L     
Sbjct: 256 ALMDTKKINADERVRLATLSIGAIIPDVFMRLAEKNETGYAFYPHSIYKKYGLHLDDLNM 315

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y+      D  +    ++I+      ++     E+G+P+I + D  N     + +G+
Sbjct: 316 EEWYDKLVADPDIRK----KEINPRQYLTRIAATQMESGYPYIVYIDTANRDHTLKDLGM 371

Query: 579 VHSSNLCTEITLNSSSEETAVCNLG--------SINLLAHFANNQFDYDKLASTIRTAVR 630
           +  SNLC EI       +               S NL +    N  +  ++   I TAVR
Sbjct: 372 IRMSNLCCEIFQYQEPSQIESYGSSASQWGQDVSCNLGSLNIVNLMESKEVDKAIDTAVR 431

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L +V D  + H +   K  N    +IGLG M     L   +I Y + EAVE AD     
Sbjct: 432 FLTDVSDRTDIHQVPTIKMGNDKSHSIGLGAMNLHGYLMKNNIMYVTDEAVEFADVFFAM 491

Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MN 739
           + ++AI  S+E+A+ER   +  F+ S + +G         + +D      +V+     + 
Sbjct: 492 MRYYAIKTSMEIARERKETFEGFEKSEYAKGRASDVLGKYYEVDFRPKSDKVKKLFEGIY 551

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +  W +L   VK +G+ N+  MAIAPT +I+ +   + SI P  + + V+       
Sbjct: 552 VPDKNDWAKLLDEVKEVGIYNAYLMAIAPTQSISYVQNSTSSIMPITEQIEVRIYGDSTT 611

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                FL          +E M+                       + +A+  D   +I+ 
Sbjct: 612 IYPMPFLT---------NENML----------------------FYRSAYNTDMFKVIDV 640

Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +  Q  +DQ  S  L++ +  + + +   Y  A+  GLK+ YY R++
Sbjct: 641 VAAAQGHVDQGISTTLFVTDDKTTRDIARYYIYAYKKGLKSLYYTRTK 688


>gi|227542804|ref|ZP_03972853.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181430|gb|EEI62402.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 718

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 167/720 (23%), Positives = 287/720 (39%), Gaps = 69/720 (9%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES-- 272
           +Y  + A   L     ++     +   +    +       +F    E+            
Sbjct: 19  DYHALNALLNLYDADGKIQFDKDRAAARQFFLQHVNQNTVFFHNLQEKLDYLVDNDYYEK 78

Query: 273 --MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVA 325
             +  ++  ++ +         F +      Y  Y        +G R  E  +     VA
Sbjct: 79  EVLEKYNFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLKTFDGQRYLERFEDRVCMVA 138

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +   E  A    + +    F  +TPT  NSG +   +  SCFL  + D++  I 
Sbjct: 139 LTLAAGD---EDLARNLVDEIILGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIG 195

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G R
Sbjct: 196 RAINSALQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGAR 255

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   YL   H D+ +FLD ++   D++ R   ++    IPD+  +   +N    LFSP
Sbjct: 256 QGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP 315

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+  +YGK F     +        + ++ +  I+A   ++ +  + FE+G+P+I +
Sbjct: 316 ---YDVERVYGKAFADVSISEHYYEMVEDPRIHKTKINARHFFQTLAEIQFESGYPYIMY 372

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQF 616
           +D  N  +P    G V  SNLC+EI   ++  E              S NL +       
Sbjct: 373 EDTVNRANPI--EGRVTQSNLCSEILQVATPSEYNADLSYATVGEDISCNLGSLNIAMAM 430

Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D    A+TI TA+R L  V +  +  ++   KK N    AIGLG M     L   HI Y 
Sbjct: 431 DSTDFATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAIGLGQMNLHGYLGREHIHYG 490

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-------- 726
           S EA++  +     + +  + AS ++A+ER   ++ F  S +  G F             
Sbjct: 491 SEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSDYASGAFFDRYDPAEFAPKT 550

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             +  + D   ++  +   W ELK+ V   G+ N    A+ PT +I+ I   + SI P  
Sbjct: 551 DKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVPPTGSISYINNSTSSIHPIA 610

Query: 787 QNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + ++     G        + N+                                 +  
Sbjct: 611 SRIEIRKEGKIGRVYYPAPHMDND-------------------------------NLEYF 639

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             A+EI    +I++ +   K++DQ  SL L+  +  S + ++     AW  G+KT YY+R
Sbjct: 640 QDAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDINRAQIYAWTHGIKTLYYIR 699


>gi|239944781|ref|ZP_04696718.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
 gi|291448244|ref|ZP_06587634.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
 gi|291351191|gb|EFE78095.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           roseosporus NRRL 15998]
          Length = 965

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/715 (17%), Positives = 240/715 (33%), Gaps = 60/715 (8%)

Query: 273 MMDFDLVYLANDLKYERD--FAFEYLGLQ-------ILYDRYFLHINGSRIEMPQ----- 318
             + +       +   RD    FE  G++          +          +  PQ     
Sbjct: 37  YDEVEWERRDVVMTNWRDGSINFEQRGVEFPDFWSVNAVNIVTSKYFRGAVGTPQRETGL 96

Query: 319 -AFFMRVAMGLALKETEK---------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQ 367
                R+         +          E    E    L    F  ++P  FN GT    Q
Sbjct: 97  KQLIDRIVKTYRKAGEDNNYFASPADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQ 156

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           +S+CF+  V D +  I    +E  M+ K   G G + + +R     +    G + G + F
Sbjct: 157 VSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSF 215

Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++ A+ +A  +  G   R+ A    L+  H D+E F++ +    +  R   D        
Sbjct: 216 MRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIRALRDAGF----- 270

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVA 544
                 +            + ++       EF  A E+  +   R  +   V  ++ A +
Sbjct: 271 -----DMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRARMTGDVIEEVEAKS 325

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           L+RKM    +    P I + D  N        G ++ SN C+E        +   CNL S
Sbjct: 326 LFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH----LDNTSCNLAS 381

Query: 605 INLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL+         N  F+ ++ A  +   +  +D  I       +K  ++    R +G+G
Sbjct: 382 LNLMKFLKDDGLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGENTRAFRQLGIG 441

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
                + L      Y S     +A      ++  +   S ELA   G Y  +  +     
Sbjct: 442 YANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPYDGYARNAEPHQ 501

Query: 720 VFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                     A+       +  +   +   W ++ +     G RN+    IAPT TI   
Sbjct: 502 RVMKQHADANAKAVHIDDLDSPVWAAATEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLA 561

Query: 776 CGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSI 831
               +  ++P    + + K    G   +VN  +   L++     E + + +     +G++
Sbjct: 562 MSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQVLRRLGYQPEQIEAIVAHIAENGNV 621

Query: 832 GNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
            +   +  +  ++   A     I  M  +   +  Q WI  A S  + L E  + + ++ 
Sbjct: 622 VDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVNLPESATVEDVEE 681

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +Y +AW MG+K     R         S       K       +         +  
Sbjct: 682 VYFEAWKMGVKALAIYRDNCKVGQPLSAKTKEKEKEEVTAKAEETIREAVEKVVE 736


>gi|157955313|gb|ABW06028.1| NrdE [Bacillus thuringiensis serovar finitimus]
          Length = 694

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|42780544|ref|NP_977791.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10987]
 gi|42736464|gb|AAS40399.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus ATCC 10987]
 gi|157955323|gb|ABW06036.1| NrdE [Bacillus thuringiensis serovar tochigiensis]
          Length = 694

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|270291188|ref|ZP_06197411.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus
           acidilactici 7_4]
 gi|270280584|gb|EFA26419.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus
           acidilactici 7_4]
          Length = 721

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 161/718 (22%), Positives = 299/718 (41%), Gaps = 82/718 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L    K+  +A   +   L   +     E+ ++A L+ +   DF +  L + L
Sbjct: 28  LHKDQEALAAFLKENVQANTKQFTSLRERFDYLLEEDYIEAELVEKYSFDF-IEKLYDYL 86

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           + +      ++     Y +Y L  N +   + + F  RVAM         E+ A++  + 
Sbjct: 87  RAQNFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADE 145

Query: 346 LSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+      +L SCFL    DD+  I   +     L+K  GG+G + 
Sbjct: 146 IIHQRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL 
Sbjct: 206 TNLREAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + +  +    LFSP  V  ++      +    + 
Sbjct: 266 AKKENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVEKVYGK-PYAYVDITKE 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+   +  EIK ++ + A  +  ++  +  E+G+P++   D  N  +P    G +  SNL
Sbjct: 325 YDNLVNNPEIKKYK-VKARNIENEISKLQQESGYPYVVNVDTANRENPIY--GKIVMSNL 381

Query: 585 CTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI               +       CNLGS N++   A           ++ T VR L
Sbjct: 382 CSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPH-----FGKSVETMVRAL 436

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  +   +   +  N     IGLG MG    L   H+ Y  P++VE        ++
Sbjct: 437 TFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLLN 496

Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRL 744
           +  + AS ++A+ERG  + +F+ S +  G +    +      +          ++  +  
Sbjct: 497 YWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTTA 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W +LK+ V   G+ + N MA+APT +I+ I   + S+ P    +  +     G      
Sbjct: 557 DWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQPIVNRVEERQEKKIGKIYYPA 616

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L N+                                 K + +A++ID   +++  +  
Sbjct: 617 PYLSND-------------------------------TLKYYQSAYDIDMRKVVDIYAAA 645

Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ  S+  ++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703


>gi|298345733|ref|YP_003718420.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 43063]
 gi|298235794|gb|ADI66926.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus
           curtisii ATCC 43063]
          Length = 714

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 166/722 (22%), Positives = 283/722 (39%), Gaps = 83/722 (11%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  +  AR    +   +     +   +K  +              +EEG       +   
Sbjct: 35  DADREAARQYFLQHVNKNTVFFHDLREKLDY-------------LVEEGYYEEDTLKQYS 81

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332
              +  L       +     +LG    Y  Y L   +G R  E  +    RV M      
Sbjct: 82  FKFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLA 138

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391
              E+ AV+    + +  +  +TPT  N+G +   ++ SCFL  + D++  I   +    
Sbjct: 139 RGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSAL 198

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I     +S GV+P +K+  D+    NQ G R+GA   Y
Sbjct: 199 QLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 258

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           +  +H D+  FLD ++   D++ R   ++    +PD+  +         LFSP    D+ 
Sbjct: 259 ISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVE 315

Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +YG  F      E Y    D   I+  +KI A   ++ +  + FE+G+P+I F+D  N 
Sbjct: 316 RVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNR 374

Query: 570 RSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
            +P             +  V   ++  E    +   +   CNLGS+N+     +      
Sbjct: 375 ANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKALESP----- 429

Query: 620 KLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
             A +I  A+R L  V D+     +   ++ N    AIGLG M     L    I Y S E
Sbjct: 430 DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDE 489

Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV 732
            ++  +      +F+A+ AS  LA ERG  +  F+ S +  G +       D     A+V
Sbjct: 490 GLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKV 549

Query: 733 RDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           R+    +     +   W  L   +K  G+ N N  AI PT +I+ I   + SI P    +
Sbjct: 550 RELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKI 609

Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            ++     G       ++ N+                                   +  A
Sbjct: 610 EIRKEGKIGRVYYPAPYMTND-------------------------------NLDYYQDA 638

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           +EI    +I++ +   K +DQ  SL L+  +  + + ++     AW  G+K+ YY+R R 
Sbjct: 639 YEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQ 698

Query: 908 AT 909
           A 
Sbjct: 699 AA 700


>gi|304385473|ref|ZP_07367818.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus
           acidilactici DSM 20284]
 gi|304328680|gb|EFL95901.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus
           acidilactici DSM 20284]
          Length = 721

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 161/718 (22%), Positives = 299/718 (41%), Gaps = 82/718 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L    K+  +A   +   L   +     E+ ++A L+ +   DF +  L + L
Sbjct: 28  LHKDQEALAAFLKENVQANTKQFASLRERFDYLLEEDYIEAELMEKYSFDF-IEKLYDYL 86

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           + +      ++     Y +Y L  N +   + + F  RVAM         E+ A++  + 
Sbjct: 87  RAQNFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADE 145

Query: 346 LSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+      +L SCFL    DD+  I   +     L+K  GG+G + 
Sbjct: 146 IIHQRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           T +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL 
Sbjct: 206 TNLREAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + +  +    LFSP  V  ++      +    + 
Sbjct: 266 AKKENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVEKVYGK-PYAYVDITKE 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+   +  EIK ++ + A  +  ++  +  E+G+P++   D  N  +P    G +  SNL
Sbjct: 325 YDNLVNNPEIKKYK-VKARNIENEISKLQQESGYPYVVNVDTANRENPIY--GKIVMSNL 381

Query: 585 CTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI               +       CNLGS N++   A           ++ T VR L
Sbjct: 382 CSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPH-----FGKSVETMVRAL 436

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  +   +   +  N     IGLG MG    L   H+ Y  P++VE        ++
Sbjct: 437 TFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLLN 496

Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRL 744
           +  + AS ++A+ERG  + +F+ S +  G +    +      +          ++  +  
Sbjct: 497 YWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTTA 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W +LK+ V   G+ + N MA+APT +I+ I   + S+ P    +  +     G      
Sbjct: 557 DWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQPIVNRVEERQEKKIGKIYYPA 616

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L N+                                 K + +A++ID   +++  +  
Sbjct: 617 PYLSND-------------------------------TLKYYQSAYDIDMRKVVDIYAAA 645

Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ +DQ  S+  ++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703


>gi|30261451|ref|NP_843828.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Ames]
 gi|50196926|ref|YP_052620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|50082988|gb|AAT70128.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 694

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|238750474|ref|ZP_04611975.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
 gi|238711405|gb|EEQ03622.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei
           ATCC 43380]
          Length = 693

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 167/711 (23%), Positives = 293/711 (41%), Gaps = 75/711 (10%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +              +EEG   + + +     
Sbjct: 16  DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLDKYDFS 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA     
Sbjct: 63  FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
             + A +    + S  F  +TPT  N G +   +L SCFL  + D++  I  ++     L
Sbjct: 120 NPQIARDLVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +
Sbjct: 240 AHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEDMYLFSP---YDVAQV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YG        + + +    + ++ + KI A   ++ +  + FE+G+P++ F+D  N  +P
Sbjct: 297 YGLPLSEISISEKYRELVDDKRIRKSKIKAREFFQVLAEIQFESGYPYMMFEDTVNRANP 356

Query: 573 QQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTI 625
               G ++ SNLC+EI   +S  E         +    S NL +    +  D      +I
Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSMNIAHTMDSPDFGKSI 414

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V D+ +  ++   +K N    AIGLG M     L    I Y S EA++  +
Sbjct: 415 ETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474

Query: 685 ESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735
                + +HAI AS +LA ERG+Y   F  S +  G +           +         +
Sbjct: 475 IYFYTLVYHAIRASNQLAIERGSYFKGFDESDYASGRYFTKYTEQSWLPKTAKVQALFAK 534

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             ++  ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++   
Sbjct: 535 SGIHIPNQQDWATLRQSVMAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEG 594

Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ N+                                 + +  A++I P 
Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGPE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674


>gi|254386108|ref|ZP_05001422.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces
           sp. Mg1]
 gi|194344967|gb|EDX25933.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces
           sp. Mg1]
          Length = 961

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 125 EIFEHELTYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 184

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 243

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DVE F++ +    +  R   D      +    +  V           ++       
Sbjct: 244 VDHPDVEAFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVE 303

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G EF +              +V  K+ A AL+RK+    +    P I +    N     
Sbjct: 304 NGTEFGLRSRMT--------GEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTC 355

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G + +SN C+E        +   CNL S+NL+         N  FD ++ A  +   
Sbjct: 356 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLNDDGKGNQSFDAERFAKVVELV 411

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITS 471

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  A   S ELA   G Y  +  +               A       ++      +  
Sbjct: 472 LMTGTAYKRSAELAAIVGPYDGYARNADAHKRVMKQHADANATAPRTQDLDNTIWAAATE 531

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RNS    +APT TI       +  ++P    + + K    G   +V
Sbjct: 532 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 591

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +      G + +   +  +  ++   A     I  M  +
Sbjct: 592 NGTVPQALRRLGYQEEQIEAIVTHIAEHGVVVDAPGLKTEHYEVFDCAMGERSISAMGHV 651

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + + E  + ++++ IY +AW MG+K     R         S  
Sbjct: 652 RMMAAIQPWISGAISKTVNMPETATVEEIEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 711

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K  + K      T+         +  
Sbjct: 712 KKEEEKEEVTAKTEETIRAAVEKVIE 737


>gi|157955339|gb|ABW06048.1| NrdE [Bacillus thuringiensis serovar thuringiensis]
          Length = 694

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I + S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAHESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++I+   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|227329867|ref|ZP_03833891.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 693

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 167/679 (24%), Positives = 279/679 (41%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +EEG     + +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 40  EKLRYLVEEGYYEADVLDQYHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 99

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ L+         A    + + S  F  +TPT  N G +   +L S
Sbjct: 100 RYLERYEDRVCLVALTLS---KGDTALASALVDEIISGRFQPATPTFLNCGKKQRGELVS 156

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+
Sbjct: 157 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 216

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 217 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 276

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +    N    LFSP    D+  +YG          +      + ++ +  I A   ++ +
Sbjct: 277 QLAKNNQVMYLFSP---YDVEQVYGVPLSEISVTEKYHEMVNDKRIRKSQIKAREFFQIL 333

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P++ F+D  N  +P    G ++ SNLC+EI               S   + 
Sbjct: 334 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+    A+          T+  A+R L  V D+ +  ++   +K N    AI
Sbjct: 392 ISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAI 446

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L    I Y + EAV+  +     ++FHAI AS  LA E    +S F+ S 
Sbjct: 447 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 506

Query: 716 WDQGVFPIDSIGLLAEV-----RDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    I    E      R+      ++  ++  W  L++ V   G+ N N  A+ 
Sbjct: 507 YATGEYFDKYIEQRWEPTTARARELFEQSGIHIPTQQDWAALRESVIAHGIYNQNLQAVP 566

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N+                 
Sbjct: 567 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND----------------- 609

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           + +  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 610 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 655

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 656 NKAQIYAWTKGIKTIYYIR 674


>gi|94989857|ref|YP_597957.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10270]
 gi|94543365|gb|ABF33413.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10270]
          Length = 726

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 171/751 (22%), Positives = 304/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKHYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRVYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA   ++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           +A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC+ C
Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724


>gi|304398690|ref|ZP_07380562.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
 gi|304353901|gb|EFM18276.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp.
           aB]
          Length = 712

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 165/720 (22%), Positives = 290/720 (40%), Gaps = 69/720 (9%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270
           +Y  + A   L      +     ++  +  + +        F    E             
Sbjct: 13  DYHALNAMLNLYDADGRIQFDKDREATRQFYLQHVQPNTVPFSSNAERLRYLVAESYYEA 72

Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVA 325
           + +  +D  +L    +    + FE+      +  Y        +G R  E  +     VA
Sbjct: 73  DVLNQYDFDFLLELHEVAEKWGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVA 132

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +    +  +E    + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 133 LTLAQGDETLARALLE---EILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 189

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 190 RAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 249

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP
Sbjct: 250 QGAGAVWLNAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENRPMALFSP 309

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+  +YG+ F     + +      + ++ +  I     ++ +  + FE+G+P+I +
Sbjct: 310 ---YDVERIYGQAFGDISISEKYDEMLADDRIRKTYIQPRDFFQTLAEIQFESGYPYIMY 366

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQF 616
           +D  N        G ++ SNLC+EI   +S+ E              S NL +    +  
Sbjct: 367 EDSVNR--SNPIAGRINMSNLCSEILQVNSASEYHDDLSYRRIGKDISCNLGSLNIAHAM 424

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D   LA T+  AVR L +V  +    ++    + N    AIGLG M     L    I Y 
Sbjct: 425 DSRDLARTVDVAVRALTSVSMMSEIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGIAYG 484

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVR- 733
           SPEA++  +     I+++A+  S +LAQE    +  F  S +  GV+    +      R 
Sbjct: 485 SPEALDFTNLYFYCITYYALRTSNQLAQEHQKTFEGFADSQYASGVYFDKYLQREWLPRT 544

Query: 734 -------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                   +  +   ++  W  L+  V   G+ N N  AI PT +I+ I   + SI P  
Sbjct: 545 ERVTTLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPIV 604

Query: 787 QNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + ++    +G       F+ N                               +   ++
Sbjct: 605 SPIEIRKEGKTGRVYYPAPFMTN-------------------------------ENLHLY 633

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+R
Sbjct: 634 QDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYIR 693


>gi|157955383|gb|ABW06081.1| NrdE [Bacillus thuringiensis serovar sotto]
          Length = 694

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++I+   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|116511804|ref|YP_809020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116107458|gb|ABJ72598.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 722

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 175/717 (24%), Positives = 298/717 (41%), Gaps = 85/717 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E    Y +     ++E        E      +  L  +L    
Sbjct: 32  KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 91  FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+   R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V      YGK F       E  
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 ++ +  I+A  L +++  +  E+G+P+I   D  N  +P    GV+  SNLC+E
Sbjct: 327 KMVANPEIRKTPINARELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    ++    D+  +++ + VR L  +
Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRALTFI 440

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +   T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ 
Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500

Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSI---------GLLAEVRDELAMNRTSRL 744
           + AS +LA E+GA + +F+ S +  G +    +           + E+   +A+   +  
Sbjct: 501 LVASNKLAVEKGASFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTIA-- 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W EL+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +     G      
Sbjct: 559 DWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP- 617

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                      L  E +                        + +A++ D   +I+  +  
Sbjct: 618 --------AAGLATETI----------------------PYYKSAYDTDMRSVIDVYAAA 647

Query: 864 QKWIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 648 TEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|15674554|ref|NP_268728.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes M1 GAS]
 gi|71910162|ref|YP_281712.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS5005]
 gi|13621660|gb|AAK33449.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus
           pyogenes M1 GAS]
 gi|71852944|gb|AAZ50967.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS5005]
          Length = 726

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 171/751 (22%), Positives = 303/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+   YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA   ++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           +A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYSDGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC+ C
Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724


>gi|238790128|ref|ZP_04633905.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
 gi|238721797|gb|EEQ13460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           frederiksenii ATCC 33641]
          Length = 693

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 168/711 (23%), Positives = 292/711 (41%), Gaps = 75/711 (10%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            ++ AR    +   +     +   +K  +              +EEG   + + E     
Sbjct: 16  DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLERYNFS 62

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334
            +  L      ++     +LG    Y  Y L   +G R  E  +     VA+ LA     
Sbjct: 63  FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393
             + A +    ++S  F  +TPT  N G     +L SCFL  + D++  I  ++     L
Sbjct: 120 NPQVARDLVEEMTSGRFQPATPTFLNCGKNQRGELVSCFLLRMEDNMESIGRSINSALQL 179

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA   YL 
Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    D+  +
Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVELV 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           YG        + + +    + ++ + KI A   ++ +  + FE+G+P++ F+D  N  +P
Sbjct: 297 YGVPMSEISISEKYREMVDDKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTVNRANP 356

Query: 573 QQHVGVVHSSNLCTEITLNSSSEE-------TAVCNLGSINLLAHFANNQFDYDKLASTI 625
               G ++ SNLC+EI   +S  E         +    S NL +    +  D      +I
Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYHHIGKDISCNLGSLNIAHTMDSPDFGKSI 414

Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            TA+R L  V D+ N  ++   +K N    AIGLG M     L    I Y S EA++  +
Sbjct: 415 ETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735
                + +HAI AS  LA ER   +  F  S +  G +    +    + +         +
Sbjct: 475 IYFYTVVYHAIRASNLLAIERGSHFKGFDESDYASGRYFTKYVEQSWQPKTAKVQALFAK 534

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
             +   ++  W++L+  V   G+ N N  AI PT +I+ I   + SI P    + ++   
Sbjct: 535 SGIAIPNQQDWEKLRNSVMEHGIYNQNLQAIPPTGSISYINHSTSSIHPIVSPIEIRKEG 594

Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G       ++ N                               +  + +  A++I P 
Sbjct: 595 KIGRVYYPAPYMTN-------------------------------ENLEYYQDAYQIGPE 623

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWQKGIKTIYYIR 674


>gi|238796651|ref|ZP_04640157.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
 gi|238719382|gb|EEQ11192.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia
           mollaretii ATCC 43969]
          Length = 693

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/656 (24%), Positives = 279/656 (42%), Gaps = 65/656 (9%)

Query: 275 DFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLA 329
            +D  ++ +  +  Y + F F  +LG    Y  Y L   +G R  E  +     VA+ LA
Sbjct: 58  QYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLA 117

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQ 388
                  + A E    + S  F  +TPT  N G +   +L SCFL  + D++  I  ++ 
Sbjct: 118 AG---NPQLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSIN 174

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ G R+GA 
Sbjct: 175 SALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAG 234

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    LFSP    
Sbjct: 235 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---Y 291

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPC 567
           D+  +YG        + + +      ++ + KI A   ++ +  + FE+G+P++ F+D  
Sbjct: 292 DVEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTV 351

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDK 620
           N  +P    G ++ SNLC+EI   +S  E              S NL +    +  D   
Sbjct: 352 NRANPI--KGRINMSNLCSEILQVNSPTEYNDDLSYRQIGKDISCNLGSLNIAHTMDSPD 409

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              +I TA+R L  V D+ +  ++   +K N    AIGLG M     L    I Y S EA
Sbjct: 410 FGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEA 469

Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----- 733
           ++  +     +++HAI AS  LA ER   +  F  S +  G +    +    + +     
Sbjct: 470 LDFTNIYFYTVAYHAIRASNLLAIERGCHFKGFDESTYASGSYFTKYVEQRWQPKTAKVQ 529

Query: 734 ---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
               +  ++   +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + 
Sbjct: 530 ALFADAGIHIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIE 589

Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           ++     G       ++ N+                                 + +  A+
Sbjct: 590 IRKEGKIGRVYYPAPYMTND-------------------------------NLEYYQDAY 618

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 619 QIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKRGIKTIYYIR 674


>gi|319406096|emb|CBI79726.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp.
           AR 15-3]
          Length = 716

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 171/689 (24%), Positives = 283/689 (41%), Gaps = 66/689 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  V+       + + +D  ++    K    F F    +LG 
Sbjct: 48  LQHVNQNTVFFHNLKEKIDYLVEENYYERELFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +    RV +         +  A    + + +  F  +TP
Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGIKGLAEGLVDEIITGRFQPATP 164

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I 
Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 224

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               ++ GV+P +K+  D     NQ G R+GA   YL   H+D+ +FLD ++   D++ R
Sbjct: 225 KIENQASGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKIR 284

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFS     D+  + GK F         ++     K
Sbjct: 285 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNSK 341

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +  +KISA   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLCTEI      
Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEA 399

Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646
               +     AV N  S NL +       + D    T+  AVR L  V D+ N   +   
Sbjct: 400 SELDTDLTYRAVGNDISCNLGSMNIAKAMESDNFGRTVEIAVRALTAVSDMSNIACVPSI 459

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
            K N    AIGLG M     L    I Y + EA++  +     +++HA+ AS  +A+ER 
Sbjct: 460 AKGNAESHAIGLGQMNLHGFLAREKIYYGTLEAIDFTNIYFYTVTYHALRASNLIARERK 519

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIG 757
             +  F+ S +  G F    I    + + EL     +R          W ELK+ V   G
Sbjct: 520 KMFVGFEKSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPNQRDWQELKQLVAQYG 579

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816
           + N    A+ PT +I+ I   + SI P    + ++     G       ++ N        
Sbjct: 580 LYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 632

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                     + +  A+EI P  +I++ +   + +DQ  SL L+
Sbjct: 633 ------------------------NLEFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLF 668

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             +  + + ++     AW  G+K+ YY+R
Sbjct: 669 FPDTATTRDINRAQIYAWKKGIKSIYYVR 697


>gi|229189533|ref|ZP_04316549.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10876]
 gi|228593978|gb|EEK51781.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 10876]
          Length = 682

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|300362787|ref|ZP_07058961.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
 gi|300353077|gb|EFJ68951.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           gasseri JV-V03]
          Length = 626

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 171/652 (26%), Positives = 288/652 (44%), Gaps = 69/652 (10%)

Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
           +G    Y  Y L  N ++  +E  +    R  M         E+ A+     + S  F  
Sbjct: 1   MGAAKFYKAYALKTNDNKQFLERFED---RAVMNALFLADGNEELALNLVKDIISNRFQP 57

Query: 354 STPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T +R LGA
Sbjct: 58  ATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGA 117

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I      S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D+
Sbjct: 118 PIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADE 177

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           + R   ++    IPD+  +   +N    LFSP    D+   YGK         E Q    
Sbjct: 178 KVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLN 234

Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              + +  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   
Sbjct: 235 NPCIKKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQV 294

Query: 592 SSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DI 638
           ++                  CNLGS+N+ A   +     DKL   +  +V+ L+ V    
Sbjct: 295 NTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSS 350

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +       +K N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S
Sbjct: 351 DLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKES 410

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELK 750
            +LA++ GA+  FK S +  G +    I          + E+  +  +   ++  W+EL 
Sbjct: 411 NKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVLPTKEDWEELI 470

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            ++K  G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++     
Sbjct: 471 TKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY----- 525

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQ 869
                                    +I  D  + +   A+E+ P  +I+  +  QK++DQ
Sbjct: 526 -------------------------KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQ 560

Query: 870 AQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
           + SL L++++  + + L+  Y  A+     + YY+R R       E  T   
Sbjct: 561 SISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 612


>gi|157955367|gb|ABW06069.1| NrdE [Bacillus thuringiensis serovar galechiae]
          Length = 694

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++I+   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|50913720|ref|YP_059692.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10394]
 gi|50902794|gb|AAT86509.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10394]
          Length = 726

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 172/751 (22%), Positives = 305/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKDAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP ++      YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKC---AYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG+M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVEAGNAANHAVGLGVMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           HA  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 HAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC+ C
Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724


>gi|94987983|ref|YP_596084.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS9429]
 gi|94991865|ref|YP_599964.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS2096]
 gi|94541491|gb|ABF31540.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS9429]
 gi|94545373|gb|ABF35420.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS2096]
          Length = 726

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 173/751 (23%), Positives = 304/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+  +YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRVYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           HA  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 HAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC  C
Sbjct: 707 LVTAPGASDETTT-------------ECHSC 724


>gi|319404591|emb|CBI78197.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 716

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 172/689 (24%), Positives = 285/689 (41%), Gaps = 66/689 (9%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  ++ +     + + +D  ++    K    F F    +LG 
Sbjct: 48  LQHVNQNTVFFHNLKEKIDYLIEEKYYERELFELYDFSFVKKLFKRAYAFKFRFPTFLGA 107

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +    RV +         +  A    + + +  F  +TP
Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGSKSLAEGLVDEIITGRFQPATP 164

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  V D++  I  ++     L+K  GG+    T +R  GA I 
Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 224

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GV+P +K+  D     NQ G R+GA   YL   H+D+ +FLD ++   D++ R
Sbjct: 225 KIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFS     D+  + GK F         ++     K
Sbjct: 285 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSK 341

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591
           +  +KISA   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLCTEI      
Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEA 399

Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646
               +     AV N  S NL +       + D    T+  AVR L  V D+ N   +   
Sbjct: 400 SELETDLTYRAVGNDISCNLGSMNIAKAMESDNFGRTVEIAVRALTAVSDMSNIACVPSI 459

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            K N    AIGLG M     L    I Y +PEA++  +     +++HA+ AS  +A+ER 
Sbjct: 460 AKGNAESHAIGLGQMNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERK 519

Query: 707 A-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIG 757
             +  F+ S +  G F    I    + + EL     +R          W ELK+ V   G
Sbjct: 520 EVFVGFEKSAYADGHFFTKYIEKEWKPQFELVQKLFTRNNIVIPNQKDWQELKQLVAQYG 579

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816
           + N    A+ PT +I+ I   + SI P    + ++     G       ++ N        
Sbjct: 580 LYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 632

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                     + +  A+EI P  +I++ +   + +DQ  SL L+
Sbjct: 633 ------------------------NLEFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLF 668

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
             +  + + ++     AW  G+K+ YY+R
Sbjct: 669 FPDTATTRDINRAQIYAWKKGIKSLYYVR 697


>gi|291618544|ref|YP_003521286.1| NrdE [Pantoea ananatis LMG 20103]
 gi|291153574|gb|ADD78158.1| NrdE [Pantoea ananatis LMG 20103]
          Length = 712

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 172/721 (23%), Positives = 301/721 (41%), Gaps = 71/721 (9%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270
           +Y  + A   L      +     ++  +    +      ++F    E             
Sbjct: 13  DYHALNAMLNLYDADGRIQFDKDQQAARQFVIQHVQPNTQHFASIAERLRYLVAEGYYEA 72

Query: 271 ESMMDFDLVYLANDLKYERD---FAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRV 324
             +  +D  ++   L  E D   FAF  +LG    Y  Y L   +G R  E  +     V
Sbjct: 73  SVLNQYDFNFVCG-LHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFEQRACMV 131

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGI 383
           A+ LA  +    +  +E    + S  F  +TPT  NSG +   +L SCFL  + D++  I
Sbjct: 132 ALTLAQGDETLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIEDNMESI 188

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G 
Sbjct: 189 GRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 248

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFS
Sbjct: 249 RQGAGAVWLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQPMALFS 308

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YG+ F     + +      + ++ +  I     ++ +  + FE+G+P+I 
Sbjct: 309 P---YDVERIYGQAFGDISISEKYAEMLADDRIRKTYIQPRDFFQTLAEIQFESGYPYIM 365

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQ 615
           ++D  N        G ++ SNLC+EI   +S+ E              S NL +    + 
Sbjct: 366 YEDSVNR--DNPIAGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGSLNIAHA 423

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D   LA T+ TA+R L  V D+ +  ++    + N    AIGLG M     L    I Y
Sbjct: 424 MDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGITY 483

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            SPEA++  +     ++++A+ AS +LA+E +  +  F  S +  G +    +    + R
Sbjct: 484 GSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQSDWQPR 543

Query: 734 --------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                    +  ++      W  L++ V   G+ N N  AI PT +I+ I   + SI P 
Sbjct: 544 TARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHATSSIHPI 603

Query: 786 YQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + ++    +G       F+ N+                                 ++
Sbjct: 604 VSRIEIRKEGKTGRVYYPAPFMTND-------------------------------NLEL 632

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+
Sbjct: 633 YQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692

Query: 904 R 904
           R
Sbjct: 693 R 693


>gi|163867488|ref|YP_001608687.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella
           tribocorum CIP 105476]
 gi|161017134|emb|CAK00692.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella
           tribocorum CIP 105476]
          Length = 716

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 174/694 (25%), Positives = 289/694 (41%), Gaps = 76/694 (10%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298
             H     ++       I+  ++     +++ + +D  ++    K    F F    +LG 
Sbjct: 48  LQHVNQNTVFFHNLKEKIDYLIEEGYYEKALFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107

Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
              Y  Y L   +G R  E  +    R+ +         +  A  F + + +  F  +TP
Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RICLVSLYLAQGNKALAESFVDEIITGRFQPATP 164

Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+G +   +L SCFL  V D++  I  A+     L+K  GG+    T +R  GA I 
Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRAVNSALQLSKRGGGVALCLTNLREAGAPIK 224

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
               +S GV+P +K+  D+    NQ G R+GA   YL   H+D+ +FLD ++   D++ R
Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    IPD+  +    N    LFS     D+  + GK F         ++     K
Sbjct: 285 IKTLSLGVVIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAK 341

Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  +KISA   ++ +  + FE+G+P+I F+D  N        G +  SNLC+EI   S +
Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTANR--SNPIAGRISMSNLCSEILQVSEA 399

Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641
            E               CNLGS+N+     +          T+ +AVR L  V D+ N  
Sbjct: 400 SELETDLTYRTIGSDISCNLGSMNIAKAMESP-----DFGQTVESAVRALTAVSDMSNIA 454

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +    K N    AIGLG M     L    I Y SPEA++  +     +++HAI  S  +
Sbjct: 455 CVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRVSNLI 514

Query: 702 AQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752
           A+E +  ++ F+ S +  G F    I    + +  L     +R          W ELKKR
Sbjct: 515 ARERQEMFAGFEKSAYADGRFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKR 574

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811
           V   G+ N N  A+ PT +I+ I   + SI P    + ++     G       ++ N   
Sbjct: 575 VIKYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 632

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            +  A+EI P  +I++ +   + +DQ  
Sbjct: 633 -----------------------------NLNFYQDAYEIGPEKIIDTYAAATQHVDQGL 663

Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 664 SLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVR 697


>gi|269850295|gb|AAP25314.2| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. Ames]
          Length = 694

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDSKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|209558900|ref|YP_002285372.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes NZ131]
 gi|209540101|gb|ACI60677.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 726

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 173/751 (23%), Positives = 304/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  NSG +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+   YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           +A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYTYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC+ C
Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724


>gi|312114419|ref|YP_004012015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219548|gb|ADP70916.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 762

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 150/658 (22%), Positives = 251/658 (38%), Gaps = 97/658 (14%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFN 360
              +   +G   +  +  F RVA   AL E E  ++     F + ++ F F+ +   L  
Sbjct: 13  KYRYTPAHGEPEQSVEETFARVARAAALAEQEASQKDWEKRFLDAMADFAFIPAGRILAG 72

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GT     L +CF+   + DD+  IF  ++E A+  +  GG+G+D++ +R  GA + G  
Sbjct: 73  AGTGRDVTLFNCFVMGEIGDDMGSIFAHVREAALTLQQGGGIGHDFSTLRPKGAPVKGVG 132

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+   L   H D+E F++ +     D  R  +
Sbjct: 133 ADASGPVSFMDVWDAMCRTIMSAGSRRGAMMGTLRCDHPDIEAFIEAKA----DPARLRN 188

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ V  +A W L                               E  VFR
Sbjct: 189 FNLSVLVTDAFMEAVKADARWPLTF-----------------------------EGTVFR 219

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++SA  LW K++   ++   P + F D  N  +       + ++N C E  L        
Sbjct: 220 EVSARGLWLKIMRSAYDYAEPGVIFIDRVNAANNLAWCETISATNPCGEQPLPPY----G 275

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGSINL A            D  +L   +  AVR+LDN+ID++ + +   ++     
Sbjct: 276 ACLLGSINLAALIEKPFEPEARLDEARLERLVPVAVRLLDNIIDVSRYPLPSQEREAKAK 335

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+ G   AL      Y       +A   M  IS  A  AS  LA+E+GA+  F  
Sbjct: 336 RRIGLGVTGLADALIFCGAHYGEESGRALAASWMARISELAYEASAALAKEKGAFPLFDA 395

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                               +              L+K ++  G+RN    +IAPT TI+
Sbjct: 396 --------------------EAFLARPFPASLPPPLQKAIRQHGIRNGVLTSIAPTGTIS 435

Query: 774 NICGV-SQSIDPSYQNLYVKSNM----SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            + G  S  ++P +   + +  +    S     V  + V   ++R               
Sbjct: 436 LLAGNVSSGVEPVFDFEFSRRVLQPDGSARHETVEDYAVRIFRER--------------Q 481

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           GS        + L      A E+ P   +E  +  Q+ +D + S  +        +  + 
Sbjct: 482 GS--------EPLPPAFVAARELTPAQHLEMQAALQRHVDASISKTVNCPASIPFEDFEM 533

Query: 888 IYRQAWLMGLKTTYYLRSRSATS---VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           +Y  A+ +GLK     R  + T       ST +        +             IP 
Sbjct: 534 LYADAYRLGLKGCTAYRPNAVTGEVLTPASTEEPPAQPALPLAAAVAREGHSIEPIPR 591


>gi|302537351|ref|ZP_07289693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
 gi|302446246|gb|EFL18062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
          Length = 960

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/626 (19%), Positives = 227/626 (36%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+  V D +  I    +E  M+ 
Sbjct: 125 EIFEHELTYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 184

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 243

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DVE+F+  +    +  R   D      +                 + +    ++D 
Sbjct: 244 VDHPDVEDFIATKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 297

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +    E   E   R    GE  V  K+ A AL+RK+    +    P I +    N     
Sbjct: 298 FMTAVENGTEFGLRARMTGE--VIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTC 355

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G + +SN C+E        +   CNL S+NL+         N  FD ++ A  +   
Sbjct: 356 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLNDDGKGNQSFDAERFAKVVELV 411

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITS 471

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744
            ++  A   S ELA   G Y  +  +               A       ++      +  
Sbjct: 472 LMTGTAYKRSAELAAIVGPYDGYARNADSHKRVMKQHADANAVAPRTEDLDNAIWAAATE 531

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RN+    +APT TI       +  ++P    + + K    G   +V
Sbjct: 532 AWQDVLRLGEKNGFRNAQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 591

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +      G++ +   +  +  ++   A     I PM  +
Sbjct: 592 NGTVPQALRRMGYLEEQIEAIVSHIAEHGNVVDAPGLKTEHYEVFDCAMGERSISPMGHV 651

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + + E  + ++++ IY +AW +G+K     R         S  
Sbjct: 652 RMMAAIQPWISGAISKTVNMPESATVEEIEEIYFEAWKLGVKALAIYRDNCKVGQPLSAK 711

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K  + K       +    T    +  
Sbjct: 712 KKEEEKAEITEKAEETIRTAVEKVIE 737


>gi|327478741|gb|AEA82051.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri DSM
           4166]
          Length = 716

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 142/650 (21%), Positives = 257/650 (39%), Gaps = 63/650 (9%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTL 358
                   +G+ I +     + RVA  LA  E   ++E     F   L +     +   +
Sbjct: 30  QKYRLSSKDGTPIDQTVDDTWQRVARALADVEPAKQREHWYERFLWALRNGAI-PAGRII 88

Query: 359 FNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
            N+G +  +      +C ++ ++ D +  I G + E  +  K   G+G +++ +R  G+ 
Sbjct: 89  SNAGAQDYKPATSTINCTVSGSITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSF 148

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G    + G + F+ + +     V+  G R+GA     +  H DV EF+  ++    + 
Sbjct: 149 VSGAGAHTSGPLSFMDIFDKMCFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKR----ED 204

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENY 525
            R    N +  I D FM+ V  +  W L  P            D   +  +E+ +     
Sbjct: 205 GRLRQFNLSLLITDEFMQTVEADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYI 264

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            R       K++ ++ A  LW  ++   ++   P     D  N  +       + ++N C
Sbjct: 265 VRDDGLVACKIYGRVKARHLWDMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPC 324

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINC 640
            E  L         C LGSINL     +       FD+DK    +R   R+LDNV++IN 
Sbjct: 325 GEQPLPPY----GSCLLGSINLTHFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEING 380

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ +    + R  G+G +G  S L LL + Y SPEA    +E    ++      ++E
Sbjct: 381 LPLEQQRHEIESKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALE 440

Query: 701 LAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------D 747
           L++E+G        +      L  +     D   +  ++   +   + SR          
Sbjct: 441 LSKEKGPAPLLSQNFEVTAEMLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAP 500

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN-----MSGDFT 800
           +L + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++       + +  
Sbjct: 501 DLIEALAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIRPGRKAKEKI 560

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            V S+    L  R L +       +   GS    +   + L     TA ++ P   ++  
Sbjct: 561 EVFSY--ELLAYRTLINA------RAKPGS----DEPGEKLPDYFITADDVSPTQHVDIQ 608

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +  QKW+D + S    +  +   +    IYR AW  GLK     R   A 
Sbjct: 609 AAAQKWVDSSISKTANVPTDYPFEAFKDIYRYAWRQGLKGCTTFRFNPAA 658


>gi|315654124|ref|ZP_07907040.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners ATCC 55195]
 gi|315488820|gb|EFU78466.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           iners ATCC 55195]
          Length = 725

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 183/754 (24%), Positives = 310/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +       + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+         D +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTANIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I +   K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNTNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|21909839|ref|NP_664107.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS315]
 gi|28896466|ref|NP_802816.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes SSI-1]
 gi|71903002|ref|YP_279805.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS6180]
 gi|139474320|ref|YP_001129036.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes str. Manfredo]
 gi|21904025|gb|AAM78910.1| putative ribonucleoside-diphosphate reductase large chain
           [Streptococcus pyogenes MGAS315]
 gi|28811717|dbj|BAC64649.1| putative ribonucleoside diphosphate reductase, large chain
           [Streptococcus pyogenes SSI-1]
 gi|71802097|gb|AAX71450.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS6180]
 gi|134272567|emb|CAM30833.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus
           pyogenes str. Manfredo]
          Length = 726

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 171/751 (22%), Positives = 303/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+   YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA   ++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           +A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC+ C
Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724


>gi|260662381|ref|ZP_05863276.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553072|gb|EEX26015.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 721

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 169/732 (23%), Positives = 290/732 (39%), Gaps = 105/732 (14%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314
            + + +      + +      +  L   ++        ++G    Y +Y +  N  +  +
Sbjct: 58  AKLVADDYLDGAVLDQYPAEFIDQLEARVRAHHFRFKSFMGAYKFYTQYAMKTNDGKRFL 117

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E       RV           ++ A +  + L +  +  +TPT  N+G +   Q+ SCFL
Sbjct: 118 EDYND---RVVANALYLARGDQQLAKDLTDELINQRYQPATPTFLNAGKKRRGQMVSCFL 174

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  AL     L++  GG+G + + +R  G  I      S GV+P +K+  D
Sbjct: 175 IDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVLPVMKLLED 234

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                NQ G+R GA   YL  +H D+  FL+ +K   D++ R   ++    +PD + + +
Sbjct: 235 AFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKENADEKIRVKTLSLGLVVPDKYYQLL 294

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             NA   LFSP +V          +    + Y+R      IK    ISA  L +K+  + 
Sbjct: 295 KSNAPMYLFSPYDVE-RELKTPFSYVDLTKEYDRLVANPRIKKT-AISARELEQKISRLQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606
            E+G+P+I   D  N  +P    G +  SNLC+EI                 V    S N
Sbjct: 353 QESGYPYILNIDHANRDNPV--AGKIIMSNLCSEILQPQEPSTLTSDLSYETVGTDISCN 410

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L +   +N          +  AVR L NV D  N   +    K N  +  IGLG MG  +
Sbjct: 411 LGSTNIDNMLQAPDFGRAVEVAVRALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHT 470

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724
           AL    I Y SPEA+E  +     ++++++ AS ++A+ER   ++ FK S +  G +  D
Sbjct: 471 ALARRQIEYGSPEALEFTEAYFLALNYYSLLASHQIAKERDETFAGFKDSRYADGSYFDD 530

Query: 725 SIG-----LLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            +         + R   + ++  +   W  LK+ V+T G+ + N +A+AP  +I+ +   
Sbjct: 531 YVTKPFTLKFEKNRAAFSGVHLPTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNET 590

Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           S S+ P  Q +  +  N  G       +L N                             
Sbjct: 591 SASLTPITQLVEQRQENKVGALFYPAPYLSN----------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPS 881
             +    +  A+++D   +I++ +  QK +DQ  SL L++                 + +
Sbjct: 622 --ETLPYYTPAYDLDQRKIIDTYAVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMT 679

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            + L+ +   AW  G+K+ YY+R+         T        N                 
Sbjct: 680 TRDLNRLRNYAWTKGIKSLYYIRT--------FTTDDEIHTAN----------------- 714

Query: 942 SSCTSDTECEVC 953
                  ECE C
Sbjct: 715 -------ECESC 719


>gi|227515315|ref|ZP_03945364.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227086329|gb|EEI21641.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|299783627|gb|ADJ41625.1| Ribonucleoside-diphosphate reductase [Lactobacillus fermentum CECT
           5716]
          Length = 721

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 169/732 (23%), Positives = 290/732 (39%), Gaps = 105/732 (14%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314
            + + +      + +      +  L   ++        ++G    Y +Y +  N  +  +
Sbjct: 58  AKLVADDYLDGAVLDQYPAEFIDQLEARVRAHHFRFKSFMGAYKFYAQYAMKTNDGKRFL 117

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E       RV           ++ A +  + L +  +  +TPT  N+G +   Q+ SCFL
Sbjct: 118 EDYND---RVVANALYLARGDQQLAKDLTDELINQRYQPATPTFLNAGKKRRGQMVSCFL 174

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  AL     L++  GG+G + + +R  G  I      S GV+P +K+  D
Sbjct: 175 IDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVLPVMKLLED 234

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                NQ G+R GA   YL  +H D+  FL+ +K   D++ R   ++    +PD + + +
Sbjct: 235 AFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKENADEKIRVKTLSLGLVVPDKYYQLL 294

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             NA   LFSP +V          +    + Y+R      IK    ISA  L +K+  + 
Sbjct: 295 KSNAPMYLFSPYDVE-RELKTPFSYVDLTKEYDRLVANPRIKKT-AISARELEQKISRLQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606
            E+G+P+I   D  N  +P    G +  SNLC+EI                 V    S N
Sbjct: 353 QESGYPYILNIDHANRDNPV--AGKIIMSNLCSEILQPQEPSTLTSDLSYETVGTDISCN 410

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L +   +N          +  AVR L NV D  N   +    K N  +  IGLG MG  +
Sbjct: 411 LGSTNIDNMLQAPDFGRAVEVAVRALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHT 470

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID 724
           AL    I Y SPEA+E  +     ++++++ AS ++A+ER   ++ FK S +  G +  D
Sbjct: 471 ALARRQIEYGSPEALEFTEAYFLALNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDD 530

Query: 725 SIG-----LLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            +         + R   + ++  +   W  LK+ V+T G+ + N +A+AP  +I+ +   
Sbjct: 531 YVTKPFTLKFEKNRAAFSGVHLPTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNET 590

Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           S S+ P  Q +  +  N  G       +L N                             
Sbjct: 591 SASLTPITQLVEQRQENKVGALFYPAPYLSN----------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPS 881
             +    +  A+++D   +I++ +  QK +DQ  SL L++                 + +
Sbjct: 622 --ETLPYYTPAYDLDQRKIIDTYAVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMT 679

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            + L+ +   AW  G+K+ YY+R+         T        N                 
Sbjct: 680 TRDLNRLRNYAWTKGIKSLYYIRT--------FTTDDEIHTAN----------------- 714

Query: 942 SSCTSDTECEVC 953
                  ECE C
Sbjct: 715 -------ECESC 719


>gi|332800125|ref|YP_004461624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Tepidanaerobacter sp. Re1]
 gi|332697860|gb|AEE92317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Tepidanaerobacter sp. Re1]
          Length = 1225

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 124/505 (24%), Positives = 206/505 (40%), Gaps = 79/505 (15%)

Query: 438  VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
                  R+GA    L   H D+ +F+  +K   D      +++ A  I D FM+ + ++ 
Sbjct: 615  FISHNTRRGANMGILRVDHPDILDFIQCKK--NDKEITNFNISVA--ITDKFMEALKEDG 670

Query: 498  GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
             + L  P                              K   K+ A  ++  ++ M +  G
Sbjct: 671  NYDLIDPHT---------------------------KKPTGKLRAREVFDLIVDMAWNNG 703

Query: 558  HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613
             P I F D  N  +P   +G + S+N C E  L         CNLGSINL          
Sbjct: 704  EPGIVFIDRMNEDNPTPEIGDIESTNPCGEQPLLPY----ESCNLGSINLAKFIKKSGNK 759

Query: 614  NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
            N  DY+ L  T+  AVR LD+VID+N + +++ ++    +R IGLG+MGF   L  L IP
Sbjct: 760  NTIDYESLKETVHLAVRFLDDVIDVNLYPLKEIEEMTKANRKIGLGVMGFADMLIELGIP 819

Query: 674  YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
            Y S EAV+ A+  M FI   + +AS ELA+ERG + +++ S++ +    I +        
Sbjct: 820  YNSDEAVKTAEAIMSFIDSESKNASCELAKERGVFPNWEKSIYKEKGMRIRNATTTTIAP 879

Query: 734  DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
                                                   + I GVS  I+P +   + + 
Sbjct: 880  TGTI-----------------------------------SIIAGVSSGIEPIFALAFERH 904

Query: 794  NMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
             M       V+      LK++ L+ E ++  +    G++  I+ +P ++K++  TA +I 
Sbjct: 905  VMDNQRLVEVHPIFKQVLKEQGLYSEELMQKVVT-QGTLQGIDELPKEIKRVFVTAHDIK 963

Query: 853  PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            P W I+  +  QK+ D A S  +      + + +  +Y  A+ +G K     R  S    
Sbjct: 964  PEWHIKMQAAFQKYTDNAVSKTVNFPNSATREDVKTVYMMAYNLGCKGVTIYRDGSRQEQ 1023

Query: 912  E--KSTLKGVDGKLNAVPVTDPNSS 934
               K T K    +    P   P+ +
Sbjct: 1024 VLNKGTKKERPARYKIKPRPRPSVT 1048



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNL 345
                   +L  RY    + G  IE P+    RV+  +A  E +  +      A +FY++
Sbjct: 7   NLTENARVVLEKRYLAKDSSGKVIETPETLIERVSNAIAKAELKYVQDKSDDWAKKFYDM 66

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +S   F+ ++PTL N+G    QLS+CF+  V D + GIF +++ +A++ K  GG G  ++
Sbjct: 67  ISELKFLPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFDSIKSSALIHKSGGGTGFSFS 126

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            +R  GA +  T G + G I F+KV N    AV QG
Sbjct: 127 RLRPKGAMVKSTGGVASGPISFMKVFNAATEAVKQG 162


>gi|332686051|ref|YP_004455825.1| ribonucleotide reductase of class Ib (aerobic), subunit alpha
           [Melissococcus plutonius ATCC 35311]
 gi|332370060|dbj|BAK21016.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 720

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 161/715 (22%), Positives = 289/715 (40%), Gaps = 84/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +       + ++   +H+  M F +  L   L  ++
Sbjct: 32  KEALEAFFKENVLPNTKIFPSIEAKINFLIENDYLEVDFIHKYSMSF-IESLYTFLMEQK 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N   +  E  +    RVA          E+ A+   + + 
Sbjct: 91  FQFQSFMAAYKFYSQYALKTNDGTMYLESYED---RVAFNALYFADGNEELAITLADEMI 147

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G +   +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGKKRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R   A I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+E FL  +
Sbjct: 208 LREASAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIERFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +    N    LFSP  V      YG  F       E
Sbjct: 268 KENADEKIRVKTLSLGILIPDKFYELTCNNEEMYLFSPYSVEKE---YGIPFSYVDITKE 324

Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ + KI+A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 325 YDQLVENPKIHKYKINARELENEISKLQQESGYPYVINIDTANKNNPV--DGKIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +              E   CNLGS N++    +          ++    R L 
Sbjct: 383 SEILQVQTPSILNDKQEYEVLGEDISCNLGSTNIVNLMESP-----DFGKSVCAMTRALT 437

Query: 634 NVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            + D +   +    +  N  +  IGLG MG  + L    I Y S E++E        +++
Sbjct: 438 YITDSSFIEVVPSIQNGNQHNHTIGLGAMGLHTFLAKNQITYGSKESIEFTTIYFMLLNY 497

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLP 745
             +  S ++A+ER   +  F+ S +  G +       D +   A+++     +   +   
Sbjct: 498 WTLVESNKIAKERQQVFHRFEYSDYADGSYFSKYLTGDFLPKSAKIKGLFKDIFIPAVED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W +L+  V+  G+ + N +A+AP  +I+ I   S S+ P  Q +  +    +G       
Sbjct: 558 WQQLRDAVQKDGLYHQNRLAVAPNGSISYINDTSASLHPITQLIEERQEKKTGKIYYPAP 617

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
            L N                            IP      + +A+++D   +I+  +  Q
Sbjct: 618 SLSN--------------------------TTIP-----YYTSAYDMDMRKVIDVYAAAQ 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + IDQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 QHIDQGMSLTLFMRSEIPEGLYEWKKTTKQTTRDLTILRHYAFNKGIKSIYYVRT 701


>gi|32491359|ref|NP_871613.1| ribonucleotide-diphosphate reductase subunit alpha [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166566|dbj|BAC24756.1| nrdE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 704

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 179/714 (25%), Positives = 294/714 (41%), Gaps = 73/714 (10%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
           L ++ ++V        Q    ++ +     +     ++E      + E+     +  +  
Sbjct: 21  LLQIEKDVFAINSYYEQHVLPNKKKFSSLEDRITYLLKEEYYESNVFENYKKDFIKNIFF 80

Query: 284 DLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
             K +      ++G    Y  Y L    N   +E  +     VA+ L       EK A+ 
Sbjct: 81  QSKKQGFKFKTFMGAIKFYSSYALKTFDNKYYLEDFEDRACMVALTLGGG---NEKFAIN 137

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               + S  F  +TPT  N G +   +  SCFL  + D++  I  AL     L+K  GG+
Sbjct: 138 IMQEILSGRFQPATPTFLNCGKKQRGEYVSCFLLRIEDNMESIGRALNSALQLSKRGGGV 197

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               T +R  GA I     +S G++P +K+  D     NQ G R+GA   YL   H D+ 
Sbjct: 198 SFLLTNLRESGAPIKCIKNQSSGIVPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDIL 257

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   ++    IPD+  K   +N    LFSP    D+  +Y K F  
Sbjct: 258 NFLDTKRENADEKIRIKTLSLGVIIPDITFKLAKENQNMCLFSP---YDIKKVYNKPFSE 314

Query: 521 AYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              +        +I++ +  I+A + ++K+  + FE+G+P+I F+D  N  +P    G +
Sbjct: 315 LIISKIYYKLINDIRIKKISINARSFFQKLAEVQFESGYPYIMFEDTVNKENPIY--GKI 372

Query: 580 HSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRT 627
           + SNLC+EI   +++ E               CNLGS+N+         D   L  T+  
Sbjct: 373 NMSNLCSEILQVNTASEYNEDLSYKKIGRDISCNLGSLNIAKT-----MDSSNLGKTVEV 427

Query: 628 AVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L  V DI   +++    K N    +IGLG M     L   +I Y SPEA+E  +  
Sbjct: 428 AIRCLTAVSDITKINSVSSVVKGNKKSHSIGLGQMNLHGYLARENIFYGSPEAIEFTNFY 487

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LA 737
              I++HAI  S  LA ER   +S F  S +  G F           + +          
Sbjct: 488 FYVITYHAIRTSNLLAIERKKTFSGFSRSKYANGKFFKKYTKKTWIPKSDRILNLFNNNN 547

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS- 796
           ++  +   W  L+  V   G+ N N  AI PT +I+ I   + SI P    + ++     
Sbjct: 548 IHLPTLKEWKILENSVMKYGLYNQNLQAIPPTGSISYINYSTSSIHPVVSRIEIRKEGKI 607

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G       ++ N                                    +  A+EI P  +
Sbjct: 608 GRVYYPAPYMTN-------------------------------KNLCYYQDAYEIGPKKI 636

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I++ +   K +DQ  SL L+  D+ + + ++     AW  G+KT YY+R R  T
Sbjct: 637 IDTYAAATKHVDQGLSLTLFFRDDATTRDINKAQIYAWKKGIKTLYYVRIRQLT 690


>gi|146280505|ref|YP_001170658.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri
           A1501]
 gi|145568710|gb|ABP77816.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri
           A1501]
          Length = 745

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 142/650 (21%), Positives = 257/650 (39%), Gaps = 63/650 (9%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTL 358
                   +G+ I +     + RVA  LA  E   ++E     F   L +     +   +
Sbjct: 59  QKYRLSSKDGTPIDQTVDDTWQRVARALADVEPAKQREHWYERFLWALRNGAI-PAGRII 117

Query: 359 FNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
            N+G +  +      +C ++ ++ D +  I G + E  +  K   G+G +++ +R  G+ 
Sbjct: 118 SNAGAQDYKPATSTINCTVSGSITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSF 177

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G    + G + F+ + +     V+  G R+GA     +  H DV EF+  ++    + 
Sbjct: 178 VSGAGAHTSGPLSFMDIFDKMCFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKR----ED 233

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENY 525
            R    N +  I D FM+ V  +  W L  P            D   +  +E+ +     
Sbjct: 234 GRLRQFNLSLLITDEFMQTVEADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYI 293

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            R       K++ ++ A  LW  ++   ++   P     D  N  +       + ++N C
Sbjct: 294 VRDDGLVACKIYGRVKARHLWDMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPC 353

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINC 640
            E  L         C LGSINL     +       FD+DK    +R   R+LDNV++IN 
Sbjct: 354 GEQPLPPY----GSCLLGSINLTHFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEING 409

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ +    + R  G+G +G  S L LL + Y SPEA    +E    ++      ++E
Sbjct: 410 LPLEQQRHEIESKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALE 469

Query: 701 LAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------D 747
           L++E+G        +      L  +     D   +  ++   +   + SR          
Sbjct: 470 LSKEKGPAPLLSQNFEVTAEMLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAP 529

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN-----MSGDFT 800
           +L + +   G R ++  +IAPT TI+       S  I+PS+ + Y ++       + +  
Sbjct: 530 DLIEALAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIRPGRKAKEKI 589

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            V S+    L  R L +       +   GS    +   + L     TA ++ P   ++  
Sbjct: 590 EVFSY--ELLAYRTLINA------RAKPGS----DEPGEKLPDYFITADDVSPTQHVDIQ 637

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +  QKW+D + S    +  +   +    IYR AW  GLK     R   A 
Sbjct: 638 AAAQKWVDSSISKTANVPTDYPFEAFKDIYRYAWRQGLKGCTTFRFNPAA 687


>gi|184156150|ref|YP_001844490.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           fermentum IFO 3956]
 gi|183227494|dbj|BAG28010.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 721

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 170/732 (23%), Positives = 290/732 (39%), Gaps = 105/732 (14%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314
            + + +      + E      +  L   ++        ++G    Y +Y +  N  +  +
Sbjct: 58  AKLVADDYLDGAVLEQYPAEFIDQLEARVRAHHFRFKSFMGAYKFYAQYAMKTNDGKRFL 117

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E       RV           ++ A +  + L +  +  +TPT  N+G +   Q+ SCFL
Sbjct: 118 EDYND---RVVANALYLARGDQQLAKDLTDELINQRYQPATPTFLNAGKKRRGQMVSCFL 174

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V D +  I  AL     L++  GG+G + + +R  G  I      S GV+P +K+  D
Sbjct: 175 IDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVLPVMKLLED 234

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                NQ G+R GA   YL  +H D+  FL+ +K   D++ R   ++    +PD + + +
Sbjct: 235 AFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKENADEKIRVKTLSLGLVVPDKYYQLL 294

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
             NA   LFSP +V          +    + Y+R      IK    ISA  L +K+  + 
Sbjct: 295 KSNAPMYLFSPYDVE-RELKTPFSYVDLTKEYDRLVANPRIKKT-AISARELEQKISRLQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606
            E+G+P+I   D  N  +P    G +  SNLC+EI                 V    S N
Sbjct: 353 QESGYPYILNIDHANRDNPV--AGKIIMSNLCSEILQPQEPSTLTSDLSYETVGTDISCN 410

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L +   +N          +  AVR L NV D  N   +    K N  +  IGLG MG  +
Sbjct: 411 LGSTNIDNMLQAPDFGRAVEVAVRALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHT 470

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID 724
           AL    I Y SPEA+E  +     ++++++ AS ++A+ER   ++ FK S +  G +  D
Sbjct: 471 ALARRQIEYGSPEALEFTEAYFLALNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDD 530

Query: 725 SIG-----LLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            +         + R   + ++  +   W  LK+ V+T G+ + N +A+AP  +I+ +   
Sbjct: 531 YVTKPFTLKFEKNRAAFSGVHLPTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNET 590

Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           S S+ P  Q +  +  N  G       +L N                             
Sbjct: 591 SASLTPITQLVEQRQENKVGALFYPAPYLSN----------------------------- 621

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPS 881
             +    +  A+++D   +I++ +  QK +DQ  SL L++                 + +
Sbjct: 622 --ETLPYYTPAYDLDQRKIIDTYAVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMT 679

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            + L+ +   AW  G+K+ YY+R+         T        N                 
Sbjct: 680 TRDLNRLRNYAWTKGIKSLYYIRT--------FTTDDEIHTAN----------------- 714

Query: 942 SSCTSDTECEVC 953
                  ECE C
Sbjct: 715 -------ECESC 719


>gi|321315507|ref|YP_004207794.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis BSn5]
 gi|291484286|dbj|BAI85361.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. natto BEST195]
 gi|320021781|gb|ADV96767.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis BSn5]
          Length = 700

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 151/697 (21%), Positives = 290/697 (41%), Gaps = 58/697 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E + + +             L  E     +E               D+  +      ++
Sbjct: 30  KEAVHSYFVDYINQNTVFFHDL-KEKLDYLVENQYYEEEFLSLYSFEDIKEVFKTAYAKK 88

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y+ Y L  N     +E  +    R+++          ++A E+ NL+ 
Sbjct: 89  FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDTEKAKEYVNLMI 145

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  STPT  N+   R  +L SCFL  V D L  I  A+  +  L+K  GG+  + + 
Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +
Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K + D+  R   ++    IPD F++   ++    +F P  +      YG+  +    N  
Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEM 322

Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   +V + KI+   L  K+  +  E+G+P+I F+D  N      H+  V  SNLC
Sbjct: 323 YDKFVDNPRVKKEKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLC 382

Query: 586 TEITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +E+         +  +E     L  S NL +    N  ++  +  T++ A   L +V + 
Sbjct: 383 SEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNILNVMEHKSIEKTVKLATDSLTHVSET 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +       +++N   ++IGLG M     L    I Y SPEA + A+     ++F++I  
Sbjct: 443 TDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQR 502

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELK 750
           S E+A+E+   +  ++GS +  G +       D      ++ +    M+  +   W +LK
Sbjct: 503 SAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFEGMHIPTTEDWKKLK 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   GM +S  + IAPT +I+ +   + S+ P  + +  ++  +              
Sbjct: 563 AFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP-------- 614

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  +    +  A+++D   +++  +  Q+ IDQ 
Sbjct: 615 -----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQG 651

Query: 871 QSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
            S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 652 ISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|253689502|ref|YP_003018692.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756080|gb|ACT14156.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 721

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 166/680 (24%), Positives = 278/680 (40%), Gaps = 74/680 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +EEG     + +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 68  EKLRYLVEEGYYEAEVLDQYQFDFIKRLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 127

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA         A    + + S  F  +TPT  N G +   +L S
Sbjct: 128 RYLERYEDRVCLVALTLA---KGDTALAGALVDEIISGRFQPATPTFLNCGKKQRGELVS 184

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+
Sbjct: 185 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 244

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 245 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 304

Query: 491 KRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           +    N    LFSP +V  ++   L        Y          +     +I A   ++ 
Sbjct: 305 QLAKNNQVMYLFSPYDVEQVYSVPLSEISVTEKYHEMVNDKRIRKS----QIKAREFFQI 360

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596
           +  + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   + +             +
Sbjct: 361 LAEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGK 418

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+    A+          T+  A+R L  V D+ +  ++   +K N    A
Sbjct: 419 DISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHIRSVPSIEKGNDESHA 473

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGS 714
           IGLG M     L    I Y + EAV+  +     ++FHAI AS  LA E    +S F+ S
Sbjct: 474 IGLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFEHS 533

Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    I    E          ++  ++  ++  W  L++ V   G+ N N  A+
Sbjct: 534 KYATGEYFDKYIEQCWEPTTARARELFEQADIHIPTQQDWAALRESVIAHGIYNQNLQAV 593

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 594 PPTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND---------------- 637

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 638 ---------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRD 682

Query: 885 LDFIYRQAWLMGLKTTYYLR 904
           ++     AW  G+KT YY+R
Sbjct: 683 INKAQIYAWTKGIKTIYYIR 702


>gi|325000219|ref|ZP_08121331.1| vitamin B12-dependent ribonucleotide reductase [Pseudonocardia sp.
           P1]
          Length = 964

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 128/643 (19%), Positives = 233/643 (36%), Gaps = 29/643 (4%)

Query: 311 GSRIEMPQAFFMR--VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQ 367
              +E     + R  V  G    + + E    E   +L    F  ++P  FN GT    Q
Sbjct: 119 KQLVERVVGTYRRAGVENGYFATDADAEVFDHELTWMLIHQVFSFNSPVWFNVGTPSPQQ 178

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           +S+CF+ +V D +  I    +E  ++ K   G G + + +R     +    G + G + F
Sbjct: 179 VSACFILSVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSF 237

Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           ++ A+ +A  +  G   R+ A    L+  H DVEEF++ +       R   D      + 
Sbjct: 238 MRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEEFVETKAKEEAKVRVLRDAGFDMDLG 297

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
              +  V         + +    + D + +  E   E   R    GE  V   + A  L+
Sbjct: 298 GSDITSVQ------YQNANNSIRVSDEFMRAVEEDTEFGLRARMTGE--VIDTVDARKLF 349

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +    +    P I +    N        G + +SN C+E        + + CNL S+N
Sbjct: 350 HGIAEAAWNCADPGIQYDGTINDWHTCPESGRITASNPCSEYMH----LDNSSCNLASLN 405

Query: 607 LLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           LL     +++FD +  A  +   +  +D  I       +    +    R +G+G     +
Sbjct: 406 LLKFLDADDRFDAETFAKAVELIITAMDISICFADFPTDPIADTTRKFRQLGIGYANLGA 465

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L      Y S     +A      ++  A   S ELA   G Y  +  +           
Sbjct: 466 LLMATGHAYDSEGGRALAGAITSLMTGAAYKRSAELAGVVGPYEGYARNAEAHQRVIRKH 525

Query: 726 IGLLAEVRDEL---AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQS 781
                 +R      A+ + + L W + ++  +  G RN+    +APT TI  +    +  
Sbjct: 526 AAANDGIRTFAASTAIQKLATLTWKQCQEIGEANGWRNAQASVLAPTGTIGLMMDCDTTG 585

Query: 782 IDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIP 838
           I+P    + + K    G   +VN  +   L       E   + ++Y    G + +   + 
Sbjct: 586 IEPDLALVKFKKLVGGGSMQIVNQSVRRALDNLGYQAEQAEAIVEYVAEHGHVVDAPGMR 645

Query: 839 DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
            +  ++   A     I PM  +   +  Q ++  A S  + + E  + + ++ IY + W 
Sbjct: 646 PEHYEVFDCAMGERSIAPMGHVRMMAAAQPFLSGAISKTVNMPERATVEDVERIYLEGWR 705

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +GLK     R         S  KG  G+  A            
Sbjct: 706 LGLKALAIYRDNCKVGQPLSAGKGGSGEKTAEAEPKVVVEQRP 748


>gi|206967719|ref|ZP_03228675.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH1134]
 gi|228907083|ref|ZP_04070947.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 200]
 gi|228951832|ref|ZP_04113930.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229043193|ref|ZP_04190916.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH676]
 gi|229069002|ref|ZP_04202295.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           F65185]
 gi|229078636|ref|ZP_04211193.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock4-2]
 gi|229126768|ref|ZP_04255780.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-Cer4]
 gi|229144055|ref|ZP_04272471.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST24]
 gi|229149652|ref|ZP_04277883.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1550]
 gi|229177858|ref|ZP_04305231.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           172560W]
 gi|296502032|ref|YP_003663732.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis BMB171]
 gi|206736639|gb|EDZ53786.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH1134]
 gi|228605649|gb|EEK63097.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           172560W]
 gi|228633862|gb|EEK90460.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1550]
 gi|228639452|gb|EEK95866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST24]
 gi|228656708|gb|EEL12534.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-Cer4]
 gi|228704706|gb|EEL57135.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock4-2]
 gi|228714114|gb|EEL65996.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           F65185]
 gi|228726155|gb|EEL77389.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH676]
 gi|228807755|gb|EEM54276.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228852587|gb|EEM97377.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 200]
 gi|296323084|gb|ADH06012.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis BMB171]
          Length = 682

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|157955309|gb|ABW06025.1| NrdE [Bacillus thuringiensis serovar canadensis]
          Length = 694

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +     E    Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVEERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|16078801|ref|NP_389620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309617|ref|ZP_03591464.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313940|ref|ZP_03595745.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318863|ref|ZP_03600157.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323135|ref|ZP_03604429.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|1710384|sp|P50620|RIR1_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|1154632|emb|CAA92810.1| NrdE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634122|emb|CAB13622.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 700

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 149/674 (22%), Positives = 284/674 (42%), Gaps = 57/674 (8%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E     +E               D+  +      ++     ++     Y+ Y L  N  
Sbjct: 52  KEKLDYLVENQYYEEEFLSLYSFEDIKEVFKTAYAKKFRFPSFMSAFKFYNDYALKTNDK 111

Query: 313 --RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLS 369
              +E  +    R+++          ++A E+ NL+ +  +  STPT  N+   R  +L 
Sbjct: 112 KKILERYED---RISIVALFFANGDTEKAKEYVNLMINQEYQPSTPTFLNAGRKRRGELV 168

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K
Sbjct: 169 SCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMK 228

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           + ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    IPD F
Sbjct: 229 LLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKF 288

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548
           ++   ++    +F P  +      YG+  +    N          +V + KI+   L  K
Sbjct: 289 VELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEMYDKFVDNPRVKKEKINPRKLLEK 345

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------NSSSEETAVCNL 602
           +  +  E+G+P+I F+D  N      H+  V  SNLC+E+         +  +E     L
Sbjct: 346 LAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLCSEVLQASQVSSYTDYDEEDEIGL 405

Query: 603 G-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +    N  ++  +  T++ A   L +V +  +       +++N   ++IGLG 
Sbjct: 406 DISCNLGSLNILNVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGA 465

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y SPEA + A+     ++F++I  S E+A+E+   +  ++GS +  G
Sbjct: 466 MNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQYEGSTYATG 525

Query: 720 VFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
            +       D      ++ +    M+  +   W +LK  V   GM +S  + IAPT +I+
Sbjct: 526 EYFDKYVSTDFSPKYEKIANLFEGMHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSIS 585

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            +   + S+ P  + +  ++  +                                     
Sbjct: 586 YVQSSTASVMPIMERIEERTYGNSKTYYP------------------------------- 614

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892
           +  +  +    +  A+++D   +++  +  Q+ IDQ  S  L+L +  + + L+ I   A
Sbjct: 615 MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYA 674

Query: 893 WLMGLKTTYYLRSR 906
              G+KT YY R++
Sbjct: 675 HHRGIKTIYYARTK 688


>gi|228920163|ref|ZP_04083512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839619|gb|EEM84911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 682

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L   +I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNNIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|329738367|gb|AEB97331.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1]
          Length = 786

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 177/737 (24%), Positives = 280/737 (37%), Gaps = 99/737 (13%)

Query: 269 LHESMMDFDLVYLANDLKYERDF------AFEYLGLQILYDR---YFLHINGSRIEMPQA 319
           L      F L    +     +DF          +GLQ        Y   +   ++E    
Sbjct: 98  LSADCKQFILENAEHISAVVKDFYNGTYHQLARVGLQSAQKYESLYLGKLGNGKLESMGQ 157

Query: 320 FFMRVAMGLALKETE---------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           FF R++   A                           F+  LSS   +  TP +   GT 
Sbjct: 158 FFTRLSAEAARGAFNIPQFAQALEVDGQVTPADVFTRFFTCLSSQLIVPPTPVMLFGGTS 217

Query: 365 HPQLSSCFLTTV--PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               +SCFL      +         +E   +    GG+G     +               
Sbjct: 218 LAAYASCFLIDSSGRNTREAFNVVAEEVIPIMNNRGGIGISLPCLGAPQN--------ES 269

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNT 481
           G + FLK  +    A N   KR   +C Y E WH D  + L +R ++  ++  R  ++ T
Sbjct: 270 GCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFT 329

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A W+PDLFMKR+ Q              L +L+G+EFE  YE  ER+           I 
Sbjct: 330 AIWMPDLFMKRLQQPGSKWTLFDHRGEHLSNLFGEEFEKEYERLERENV-----GVATIP 384

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVC 600
              +  +++     TG P++ FKD  N           +  SNLCTEI   + S+   VC
Sbjct: 385 ITEIMFQIIKSAVSTGTPFVVFKDAFNRHYFYNMQHRALKCSNLCTEIAHMADSDTVGVC 444

Query: 601 NLGSINLLAHFAN----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           NL SINL A   N          + FDY+ L  T RTA    + +I +     ++A+  N
Sbjct: 445 NLISINLAAMVKNARAGLAGKPGSFFDYELLRETARTATIFANVMISLGNMPSQRAQSGN 504

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
           H  R++G+G+ G  +A  +      S E  E  D   E ++      S  L +     + 
Sbjct: 505 HRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFNDTVFELLALETTGISCRLCELGLPPFD 564

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            ++ S +  G   ID                  +  WD L+ R+   G+ N   +A+ PT
Sbjct: 565 KYRESYYALGWLHIDGWPNTKLR---------YKNEWDSLRHRIDQSGLYNCQTVALMPT 615

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKY 826
           A+ + I  VS+   P + N++ K + +G+    +  L++ + +           +++LK 
Sbjct: 616 ASSSQITEVSEGFQPVFGNMFSKISTTGEEVRPHLALMDAIDELYSDQGEKQAFLANLKK 675

Query: 827 HDGSIG---NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--- 880
           H  S+            +     TAFE+D   L+  ++RR  +ID +QS  LY+ E    
Sbjct: 676 HQWSVRAALGSAWSESHVLAKFQTAFELDQEKLLYLSARRAPFIDHSQSNTLYITEDVDG 735

Query: 881 --SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             S  ++  + + A+  GLKT  YY + R  T+             N V V         
Sbjct: 736 TLSASRVSRLLQVAFKYGLKTAMYYCKVRKITN-------------NGVFVG-------- 774

Query: 938 LGIPSSCTSDTECEVCQ 954
                SC     C  CQ
Sbjct: 775 -----SCGDSLICSACQ 786


>gi|312872655|ref|ZP_07732720.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311091697|gb|EFQ50076.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 725

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 182/754 (24%), Positives = 311/754 (41%), Gaps = 89/754 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++ +     +       + +  + E     I+     + L   +  +++ ++    K   
Sbjct: 29  KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84

Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D  F +   +G    Y+ Y L  N     +E  +    RV M         E  A     
Sbjct: 85  DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    F  +TPT  N+G +   +  SC+L  V D++  I  ++  +  L+K  GG+   
Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            T +R  GA I     +S G+IP +K+  D+    NQ G+R+GA   YL   H ++ +FL
Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D ++   D++ R   ++    IPD+  +   +N    LFSP    D+   YGK       
Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             E        K+ +  ISA  L++ +  + FE+G+P+I F+D  N R+P +  G +  S
Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378

Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI   ++  E               CNLGS+N+      +    +     +  ++R
Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMDYS----EHFEHLVANSIR 434

Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD V  + N       +K N  + A+GLG M     L   HI Y SPEAV+  D     
Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741
            +++A  AS +LAQ+ GAYS FK S +  G +           +     +          
Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           SR  W+ L   +K  G+ NS+ +A+APT +I+ +   + S+ P    +  +         
Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860
           V ++                              +I ++  K +   A+E+ P  +I+  
Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  QK +DQA SL L++ +  + + L+  Y  A+     T YY+R      V +  L+G 
Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           +       +               CT   EC+VC
Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723


>gi|209694807|ref|YP_002262735.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238]
 gi|208008758|emb|CAQ78955.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238]
          Length = 717

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 139/654 (21%), Positives = 263/654 (40%), Gaps = 60/654 (9%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSF 349
           ++   + I   +Y L    G+R++      F RVA  L+  E   E++   E +      
Sbjct: 19  YQSTSMDIWESKYCLKNKQGNRVDLSMDDTFKRVAKALSDLEQPAEQKQWNEQFLWALRN 78

Query: 350 HFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             + +     N+G    +      +C ++ T+ D +  I G + E  +  K   G+G D+
Sbjct: 79  GAIPAGRITSNAGAFEHKPATSTINCTVSGTIVDSMDDILGKVHEAGLTLKAGCGIGYDF 138

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H DV +F+ 
Sbjct: 139 STLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVIDFIR 198

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP----------DEVSDLHDLY 514
            ++    +  R    N +  I + F++ V     W L  P           ++   + + 
Sbjct: 199 AKR----EDGRLRQFNLSLLITEDFVEAVKNQNDWQLIFPITLKEAKLDHMDLYSDNSVV 254

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             ++ +     E +      KV+R + A  LW  ++T  ++   P     D  N  +   
Sbjct: 255 WADWPVKEGFAENEEGLVACKVYRTMPAQNLWNIIMTSTYDYAEPGFILIDKVNQMNNNW 314

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAV 629
               + ++N C E  L         C LGSINL     N       FD+D   + +    
Sbjct: 315 FCEEIRATNPCGEQPLPPY----GACLLGSINLTKFVRNPFTDTAFFDWDAYRNVVSIFT 370

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDNV++IN   +E+ +      R  G+G +G  S L +L   Y S E++   ++  + 
Sbjct: 371 RMLDNVVEINQLPLEQQRHEIMHKRRHGMGFLGLGSTLTMLQHKYGSIESIGFTEQVAQE 430

Query: 690 ISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLLAEVRDELAMNRTS 742
           ++     + ++LA E+G+    + S          +     D I L  +V+ ++   + S
Sbjct: 431 MAVTGWKSGLDLAAEKGSAPIMEESFIVTAKMLRQRPEMAEDGIKLGDKVKGKVLHAKYS 490

Query: 743 RLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794
           R          +L  ++   G+R ++  +IAPT TI+       S  I+PS+ + Y ++ 
Sbjct: 491 RYMQQLAIIEPKLVAKIIEQGVRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRNV 550

Query: 795 MSG---DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +         V+ +    L  R L ++  +      +          + L     TA +I
Sbjct: 551 IKTGKKSKESVDVYSYELLAYRALINDKAMPYSTNEE----------NKLPDYFITADDI 600

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            P   +   +  QKWID + S    +  +   ++   IY  A+  GLK     R
Sbjct: 601 TPQQHVAVQAAAQKWIDSSISKTANIPTDFPFEEFKDIYMDAYDKGLKGCTTFR 654


>gi|308187850|ref|YP_003931981.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
 gi|308058360|gb|ADO10532.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans
           C9-1]
          Length = 712

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 170/720 (23%), Positives = 293/720 (40%), Gaps = 69/720 (9%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270
           +Y  + A   L      +     ++  +  + +        F    E             
Sbjct: 13  DYHALNAMLNLYDADGRIQFDKDREATRQFYLQHVQPNTVSFASNAERLRYLVAESYYEA 72

Query: 271 ESMMDFDLVYLAND--LKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325
           + +  +D  +L     +   R F F  +LG    Y  Y L   +G R  E  +     VA
Sbjct: 73  DVLNQYDFEFLLALHEVAENRGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVA 132

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + LA  +    +  +E    + S  F  +TPT  N G +   +L SCFL  + D++  I 
Sbjct: 133 LTLAQGDETLARALLE---EILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 189

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R
Sbjct: 190 RAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 249

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA   +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP
Sbjct: 250 QGAGAVWLNAHHPDIFRFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKPMALFSP 309

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563
               D+  +YG+ F     + +      + ++ +  I     ++ +  + FE+G+P+I +
Sbjct: 310 ---YDVERIYGQAFGDISISEKYDEMLADDRIRKTYIQPRDFFQTLAEIQFESGYPYIMY 366

Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQF 616
           +D  N        G ++ SNLC+EI   +S+ E              S NL +    +  
Sbjct: 367 EDSVNR--SNPIAGRINMSNLCSEILQVNSASEYNDDLSYRRVGKDISCNLGSLNIAHAM 424

Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           D   LA T+  AVR L +V  +    ++    + N    AIGLG M     L    I Y 
Sbjct: 425 DSRDLARTVDVAVRALTSVSMMSEIGSVPSIAEGNRRSHAIGLGQMNLHGYLAREGIAYG 484

Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR- 733
           SPEA++  +     I+++A+  S +LAQE    +  F  S +  GV+    +      R 
Sbjct: 485 SPEALDFTNLYFYCITYYALRTSNQLAQEHQQTFDGFADSDYASGVYFDKYLQRAWLPRT 544

Query: 734 -------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                   +  +   ++  W  L+  V   G+ N N  AI PT +I+ I   + SI P  
Sbjct: 545 ERVAQLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPIV 604

Query: 787 QNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             + ++    +G       F+ N                               +   ++
Sbjct: 605 SPIEIRKEGKTGRVYYPAPFMTN-------------------------------ENLHLY 633

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
             A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+KT YY+R
Sbjct: 634 QDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYIR 693


>gi|221067377|ref|ZP_03543482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni KF-1]
 gi|220712400|gb|EED67768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni KF-1]
          Length = 797

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 147/674 (21%), Positives = 249/674 (36%), Gaps = 87/674 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTP 356
            +L ++Y    +G + E  Q  F RVA  LA  E  +       +F   L          
Sbjct: 12  DVLAEKYLA--DGEQSE--QDLFARVAHALAAVEKPELQAHWEQKFLLNLQLGAIGAGRI 67

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
                      L +CF+  V D   G         + AL + A   +  GG+G D++ +R
Sbjct: 68  MAAAGLDTKATLINCFVQPVADATNGFDTQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GTN  + G   F+ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 128 PRGALVRGTNSNASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + + FM+ V  +A W L      SD     G             
Sbjct: 188 KG----RWNNFNVSVGVSNAFMQAVRDDAEWELLHVASPSDAQIQAG-----------AH 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                + V++   A  LW  ++   ++   P I F D  N  +   +   + ++N C E 
Sbjct: 233 RREDGLWVYQSQPARTLWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQ 292

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L         C+LG + L             FD +   + +   VR+LDNV+D     +
Sbjct: 293 PLPPY----GCCDLGPVILTRFVREPFTPQAFFDLEAFRAAVAVQVRMLDNVLDATVWPL 348

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + ++     R IG+G  G   AL LL + YAS   ++ A+     +   A +ASVELA+
Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAEAIARNMRDAAYAASVELAR 408

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G++  F    +                      +  ++    EL+  ++  G+RNS+ 
Sbjct: 409 EKGSFPLFNAKQY--------------------LKSGFAKRLPKELRADIRKHGLRNSHL 448

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM---SGD-FTVVNSFLVNELKQRDLWD 817
           ++IAPT T++       S  I+P++   Y +       G+ F  V        K      
Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRRKRTADGGEQFYTVQDHAYRLYKAM---- 504

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                          + +  P  L +   +A E+     +      Q +ID + S  + +
Sbjct: 505 ---------------HGDEAP--LPECFVSALELSASEHVAMMRCVQPFIDTSISKTVNI 547

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA-VPVTDPNSST 935
             +   +    +Y + W  GLK     R         ST                  +S+
Sbjct: 548 PADYPFEDFKHLYMECWEAGLKGCATYRPNDTLGAVLSTESASKPSQTPTDKAQAAINSS 607

Query: 936 HSLGIPSSCTSDTE 949
            S G+ +      E
Sbjct: 608 GSNGMTAVIERRPE 621


>gi|167572268|ref|ZP_02365142.1| ribonucleotide reductase system [Burkholderia oklahomensis C6786]
          Length = 825

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 143/633 (22%), Positives = 249/633 (39%), Gaps = 76/633 (12%)

Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
                + RVA G+A  E    +++    F   L                +    L +CF+
Sbjct: 13  TVDDIYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAATLINCFV 72

Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D + G        I+ AL + A   +  GG+G +++ +R  GA++H T   + G  
Sbjct: 73  QPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGPC 132

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  I
Sbjct: 133 SYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVAI 188

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q+  W L    E S      G                  + V+ +  A A+
Sbjct: 189 TDAFMDAVEQDLPWQLVHRAEPSPARRAAGDL----------HRRDDGMWVYAEKRARAI 238

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P + F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 239 WDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 294

Query: 606 NLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL     +           FD+D LA   RT VR LD+V+D+    + + +      R I
Sbjct: 295 NLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRRI 354

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F    +
Sbjct: 355 GIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADRY 414

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                              L     +    D+++  ++  G+RNS+ ++IAPT T++   
Sbjct: 415 -------------------LEAGTFASRLPDDIQDAIRRDGIRNSHLLSIAPTGTVSLAF 455

Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               S  I+P++   Y ++ +           + +  +R    E     L    G  G++
Sbjct: 456 ADNASNGIEPAFSWTYQRTKI-----------MADGGRRTFAVEDYAYRLYRELG--GDV 502

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
           + +PD       +A ++     +   +  Q ++D + S  + +  +      + +Y  AW
Sbjct: 503 DALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPFDDFESLYFDAW 558

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             GLK     R          T +  D    A 
Sbjct: 559 KSGLKGLATYRPNETLGAVLHTSEPEDTLTEAD 591


>gi|167565165|ref|ZP_02358081.1| ribonucleotide reductase system [Burkholderia oklahomensis EO147]
          Length = 843

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 143/633 (22%), Positives = 249/633 (39%), Gaps = 76/633 (12%)

Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
                + RVA G+A  E    +++    F   L                +    L +CF+
Sbjct: 31  TVDDIYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAATLINCFV 90

Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             V D + G        I+ AL + A   +  GG+G +++ +R  GA++H T   + G  
Sbjct: 91  QPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGPC 150

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            ++ V + +   V   G R+GA  A L+  H D+ EF++ + + G    R ++ N +  I
Sbjct: 151 SYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVAI 206

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V Q+  W L    E S      G                  + V+ +  A A+
Sbjct: 207 TDAFMDAVEQDLPWQLVHRAEPSPARRAAGDL----------HRRDDGMWVYAEKRARAI 256

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P + F    N  +  + V  + ++N C E  L +       CNLG +
Sbjct: 257 WDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 312

Query: 606 NLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           NL     +           FD+D LA   RT VR LD+V+D+    + + +      R I
Sbjct: 313 NLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRRI 372

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G  G    L +L + Y S E  + A      +   A  ASVELA+ERGA+  F    +
Sbjct: 373 GIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADRY 432

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                              L     +    D+++  ++  G+RNS+ ++IAPT T++   
Sbjct: 433 -------------------LEAGTFASRLPDDIQDAIRRDGIRNSHLLSIAPTGTVSLAF 473

Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
               S  I+P++   Y ++ +           + +  +R    E     L    G  G++
Sbjct: 474 ADNASNGIEPAFSWTYQRTKI-----------MADGGRRTFAVEDYAYRLYRELG--GDV 520

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
           + +PD       +A ++     +   +  Q ++D + S  + +  +      + +Y  AW
Sbjct: 521 DALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPFDDFESLYFDAW 576

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             GLK     R          T +  D    A 
Sbjct: 577 KSGLKGLATYRPNETLGAVLHTSEPEDTLTEAD 609


>gi|94993747|ref|YP_601845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10750]
 gi|94547255|gb|ABF37301.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10750]
          Length = 726

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 171/751 (22%), Positives = 302/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKHYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+   YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA   ++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRLSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           +A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC  C
Sbjct: 707 LVTAPGASDETTT-------------ECHSC 724


>gi|291454575|ref|ZP_06593965.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
 gi|291357524|gb|EFE84426.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
          Length = 965

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/669 (18%), Positives = 234/669 (34%), Gaps = 44/669 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L DR       +  E                  + E    E    L    F  
Sbjct: 100 RETGLKQLIDRIVKTYRKAGEEN----------NYFASPADAEIFEHELAYALLHQIFSF 149

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R    
Sbjct: 150 NSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKE 209

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F+  + +  +
Sbjct: 210 LLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVSEEE 268

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +    +  V           ++        G  F +           
Sbjct: 269 KIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDAFMKAVESGSTFGLRARMT------ 322

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E    
Sbjct: 323 --GEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH- 379

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +   CNL S+NL+         N  F+ ++ +  +   +  +D  I       +K 
Sbjct: 380 ---LDNTSCNLASLNLMKFLKDDGKGNQSFESERFSKVVELVITAMDISICFADFPTQKI 436

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R +G+G     + L      Y S     +A      ++  +   S ELA   G
Sbjct: 437 GENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVG 496

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762
            Y  +  +               A+      ++      +   W ++ +     G RN+ 
Sbjct: 497 PYDGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAWQDVVRLGAKNGFRNAQ 556

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              IAPT TI       +  ++P    + + K    G   +VN  +   L++ + + E  
Sbjct: 557 ASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRMN-YSEEQ 615

Query: 821 ISDLKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLN 874
           I  +  H    G++ +   +  +  ++   A     I  M  +   +  Q WI  A S  
Sbjct: 616 IEAIVAHIAEHGNVIDAPALKPEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKT 675

Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + L E  + + ++ +Y +AW +G+K     R         S  K  + K       +   
Sbjct: 676 VNLPETATVEDVEEVYFEAWKLGVKALAIYRDNCKVGQPLSAKKKEEEKAEITEQAEETI 735

Query: 934 STHSLGIPS 942
                 +  
Sbjct: 736 RAAVEKVVE 744


>gi|306827910|ref|ZP_07461177.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes ATCC 10782]
 gi|304429829|gb|EFM32871.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes ATCC 10782]
          Length = 726

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 174/751 (23%), Positives = 304/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+   YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA   ++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           +A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +      +  
Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWKALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R      V +  L G +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVR------VRQDVLAGSEQY 702

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                VT P +S  S           EC+ C
Sbjct: 703 DEDSLVTAPEASDESTT---------ECQSC 724


>gi|239982726|ref|ZP_04705250.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus
           J1074]
          Length = 924

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 125/669 (18%), Positives = 234/669 (34%), Gaps = 44/669 (6%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
              GL+ L DR       +  E                  + E    E    L    F  
Sbjct: 59  RETGLKQLIDRIVKTYRKAGEEN----------NYFASPADAEIFEHELAYALLHQIFSF 108

Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
           ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ K   G G + + +R    
Sbjct: 109 NSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKE 168

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            +    G + G + F++ A+ +A  +  G   R+ A    L+  H D+E+F+  + +  +
Sbjct: 169 LLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVSEEE 227

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
             R   D      +    +  V           ++        G  F +           
Sbjct: 228 KIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDAFMKAVESGSTFGLRARMT------ 281

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
              +V  ++ A +L+RKM    +    P I + D  N        G ++ SN C+E    
Sbjct: 282 --GEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH- 338

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
               +   CNL S+NL+         N  F+ ++ +  +   +  +D  I       +K 
Sbjct: 339 ---LDNTSCNLASLNLMKFLKDDGKGNQSFESERFSKVVELVITAMDISICFADFPTQKI 395

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            ++    R +G+G     + L      Y S     +A      ++  +   S ELA   G
Sbjct: 396 GENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVG 455

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762
            Y  +  +               A+      ++      +   W ++ +     G RN+ 
Sbjct: 456 PYDGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAWQDVVRLGAKNGFRNAQ 515

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              IAPT TI       +  ++P    + + K    G   +VN  +   L++ + + E  
Sbjct: 516 ASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRMN-YSEEQ 574

Query: 821 ISDLKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLN 874
           I  +  H    G++ +   +  +  ++   A     I  M  +   +  Q WI  A S  
Sbjct: 575 IEAIVAHIAEHGNVIDAPALKPEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKT 634

Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + L E  + + ++ +Y +AW +G+K     R         S  K  + K       +   
Sbjct: 635 VNLPETATVEDVEEVYFEAWKLGVKALAIYRDNCKVGQPLSAKKKEEEKAEITEQAEETI 694

Query: 934 STHSLGIPS 942
                 +  
Sbjct: 695 RAAVEKVVE 703


>gi|227545164|ref|ZP_03975213.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri CF48-3A]
 gi|300909161|ref|ZP_07126622.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           reuteri SD2112]
 gi|227184847|gb|EEI64918.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri CF48-3A]
 gi|300893026|gb|EFK86385.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus
           reuteri SD2112]
          Length = 723

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 158/710 (22%), Positives = 282/710 (39%), Gaps = 72/710 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        L  E F    E             +  +  L + LK + 
Sbjct: 34  KLALEDFIKNNVEPNTKSFSSL-KERFQWLEENDYIEEEFMNKYSEAFIEKLYDYLKTQN 92

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y +Y L  N     +      RVAM         E+ A++  + +   
Sbjct: 93  FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMQLADEIIHQ 151

Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + + +R
Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 212 EAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V QNA   LFSP +V     +YG  F       E  
Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDV---ERVYGMPFSYVDITKEYD 328

Query: 529 A-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +    +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+E
Sbjct: 329 NLVANDDIRKKKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCSE 386

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N+    + +    S NL +    N  +      +I+  +R L  + D+ +
Sbjct: 387 IAQVQVPAQVNNDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVED 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS 
Sbjct: 447 LDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASN 506

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKR 752
           E+A+E +  +  F+ S +  G +    +      + ++               W +LK+ 
Sbjct: 507 EIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKKLKEN 566

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811
           V   G+ N   +A+AP  + + I   + S+ P    +  +   M G       +L N+  
Sbjct: 567 VMQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSND-- 624

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A+++D   +I++ +  Q+ IDQ+ 
Sbjct: 625 -----------------------------TMPYYRSAYDMDMRKVIDTYAAAQQHIDQSL 655

Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           S+ L++                   + + L+ +   A+  G+K+ YY+R+
Sbjct: 656 SMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705


>gi|218232459|ref|YP_002366134.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           B4264]
 gi|218160416|gb|ACK60408.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus B4264]
          Length = 682

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKAIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESSEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|327394923|dbj|BAK12345.1| ribonucleoside-diphosphate reductase 2 alpha subunit NrdE [Pantoea
           ananatis AJ13355]
          Length = 693

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 167/667 (25%), Positives = 288/667 (43%), Gaps = 67/667 (10%)

Query: 265 KARLLHESMMDFDLVYLANDLKYERD---FAF-EYLGLQILYDRYFLH-INGSRI-EMPQ 318
           +       +  +D  ++   L  E D   FAF  +LG    Y  Y L   +G R  E  +
Sbjct: 48  EGYYEASVLNQYDFNFVCG-LHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFE 106

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377
                VA+ LA  +    +  +E    + S  F  +TPT  NSG +   +L SCFL  + 
Sbjct: 107 QRACMVALTLAQGDEPLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIE 163

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D    
Sbjct: 164 DNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSY 223

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G R+GA   +L   H D+  FLD ++   D++ R   ++    IPD+  +   +N 
Sbjct: 224 ANQLGARQGAGAVWLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQ 283

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFET 556
              LFSP    D+  +YG+ F     + +      + ++ +  I     ++ +  + FE+
Sbjct: 284 PMALFSP---YDVERIYGQAFGDISISEKYAEMLADDRIRKTYIQPRDFFQTLAEIQFES 340

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLA 609
           G+P+I ++D  N        G ++ SNLC+EI   +S+ E              S NL +
Sbjct: 341 GYPYIMYEDSVNR--DNPIAGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGS 398

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               +  D   LA T+ TA+R L  V D+ +  ++    + N    AIGLG M     L 
Sbjct: 399 LNIAHAMDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLA 458

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIG 727
              I Y SPEA++  +     ++++A+ AS +LA+E +  +  F  S +  G +    + 
Sbjct: 459 REGIAYGSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQ 518

Query: 728 LLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
              + R         +  ++      W  L++ V   G+ N N  AI PT +I+ I   +
Sbjct: 519 SDWQPRTARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHAT 578

Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            SI P    + ++    +G       F+ N+                             
Sbjct: 579 SSIHPIVSRIEIRKEGKTGRVYYPAPFMTND----------------------------- 609

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
               +++  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++     AW  G+
Sbjct: 610 --NLELYQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGI 667

Query: 898 KTTYYLR 904
           KT YY+R
Sbjct: 668 KTLYYIR 674


>gi|218896384|ref|YP_002444795.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus G9842]
 gi|228900032|ref|ZP_04064268.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
 gi|228964414|ref|ZP_04125528.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218545317|gb|ACK97711.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus G9842]
 gi|228795271|gb|EEM42763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228859646|gb|EEN04070.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
          Length = 682

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676


>gi|157955408|gb|ABW06100.1| NrdE [Bacillus cereus]
          Length = 694

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 300/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+   GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|157955391|gb|ABW06087.1| NrdE [Bacillus thuringiensis serovar thompsoni]
          Length = 694

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFKKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|157955387|gb|ABW06084.1| NrdE [Bacillus thuringiensis serovar subtoxicus]
          Length = 694

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 300/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+   GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|295690403|ref|YP_003594096.1| ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
 gi|295432306|gb|ADG11478.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Caulobacter segnis ATCC 21756]
          Length = 747

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 147/641 (22%), Positives = 242/641 (37%), Gaps = 87/641 (13%)

Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
             +  + RVA  +A  E    +E    +F + L  F FM +      +GT     L +CF
Sbjct: 28  TVEDSWRRVAEAIAQAEPAEAREAWREKFLDALGDFQFMPAGRIFAGAGTGRAVTLFNCF 87

Query: 373 LT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +  T+PDDL GIF  L+E A+  +  GG+G D++ +R  GA + G    + G + F+ V 
Sbjct: 88  VMGTLPDDLPGIFEHLREAAVTLQQGGGVGMDFSTIRPSGAPVRGVGADASGPLSFMDVW 147

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +     +   G+R+GA+   L   H D+E F+D ++    +  R  + N +  + D F++
Sbjct: 148 DSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKR----EPTRLRNFNLSVLVTDAFLE 203

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            +  +A W L    E                             VF+ + A  LWR+++T
Sbjct: 204 ALAADADWPLVFGGE-----------------------------VFKTVRASDLWRRLMT 234

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609
             +    P + F D  N R+       + +SN C E  L         C LGSINL    
Sbjct: 235 ATYAYAEPGVIFVDRVNARNNLADCETICASNPCGEQMLPPY----GACLLGSINLARLV 290

Query: 610 ---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
                     D +KLA     A+R LD+VID++   +E   +     R +GLG+ G   A
Sbjct: 291 AAPFTEGAVLDEEKLAELTHVAIRFLDDVIDVSRFPLEAQAEEARAKRRLGLGVTGLADA 350

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L      Y S EA +     +  I   A  AS  LA E+G Y  +           +D  
Sbjct: 351 LIFCGQRYGSQEAAQTIKRWLGIIKREAYRASAALAAEKGPYPLWD-------PRVLDRP 403

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785
            LL                 D+ +  +   G+RN    +IAPT T + + G  S  ++P 
Sbjct: 404 NLLE--------------LDDDTRALIAKHGLRNGCLTSIAPTGTTSLVAGNVSSGVEPV 449

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y +                  +      +  + D         + E  P     + 
Sbjct: 450 FAYAYSRKVR---------------QPDGSTRQEAVEDYALTVWKRLHGETEPPA--DVF 492

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +A  + P   +   +  Q  ID + S  +    + +      +Y + W MG K     R
Sbjct: 493 VSAQTLTPREHLVMQAAAQSMIDSSISKTVNCPADIAFDAFCDVYLEGWRMGCKGLTTYR 552

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             + T    S +     +  A         T  +    + +
Sbjct: 553 PNAVTGSVLS-VDTPPAEPPASTPEATLGETPLIARDEALS 592


>gi|212712929|ref|ZP_03321057.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM
           30120]
 gi|212684407|gb|EEB43935.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM
           30120]
          Length = 710

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 175/728 (24%), Positives = 290/728 (39%), Gaps = 77/728 (10%)

Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY-------IEEG 263
            +  +Y  + A   L      +     K+       +       +F          + E 
Sbjct: 7   SRNADYHALNAMLNLYDNEGRLQLDKDKQAAYLYFRQHVNQNTVFFHDLKEKLDFLVNEK 66

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFF 321
                +        +  L       +     +LG    Y  Y L   +G R  E  +   
Sbjct: 67  YYEEEVLAQYDFPFIKQLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRV 126

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380
             VA+ LA         A  F + + +  F  +TPT  N G +   +L SCFL  + D++
Sbjct: 127 CMVALTLAQGSKS---LASLFVDEIITGRFQPATPTFLNCGKKQRGELISCFLLRIEDNM 183

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I  ++     L+K  GG+    + +R  GA I     +S GV+P +K+  D     NQ
Sbjct: 184 ESIGRSVNSALQLSKRGGGVAFLMSNLREQGAPIKQIKNQSSGVVPVMKMLEDAFSYANQ 243

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    
Sbjct: 244 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNEDMY 303

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP ++  ++ +   E     E Y    +   IK F+ I+A   ++ +  + FE+G+P+
Sbjct: 304 LFSPYDIQKIYGVPMSEIS-VTEKYHEMVNNKAIKKFK-INAREFFQTIAEIQFESGYPY 361

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608
           I F+D  N  +P    G ++ SNLC+EI                   +   CNLGS+N+ 
Sbjct: 362 ILFEDTANRANPI--AGRINMSNLCSEILQVNQASQYEDDLSYQEIGKDISCNLGSMNIA 419

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   D    A +I TA+R L  V D+ N  ++    K N    AIGLG M     L
Sbjct: 420 NT-----MDSPDFALSIETAIRALTAVSDMSNIGSVPSIAKGNRQSHAIGLGQMNLHGFL 474

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI 726
              HI Y S E ++  +     +++HA+  S +LA E +  +  F+ S +  G +    I
Sbjct: 475 AREHIHYGSEEGLDFTNIYFYTVAYHALKTSNQLAIERQQTFDGFESSSYASGEYFDKYI 534

Query: 727 GLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                       E+     +   ++  W  LK+ V T GM N N  AI PT +I+ I   
Sbjct: 535 NNTWLPKTQTVQELFRRSGIEIPTQANWQALKQSVMTNGMYNQNLQAIPPTGSISYINNS 594

Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           + SI P    + ++     G       F+ N                             
Sbjct: 595 TSSIHPVVAPIEIRKEGKIGRVYYPAPFMTN----------------------------- 625

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
             +  + +  A++I P  +I++ +   + +DQ  SL L+ D   + + ++     AW  G
Sbjct: 626 --ENLQFYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGNATTRDINKAQIYAWRKG 683

Query: 897 LKTTYYLR 904
           +KT YY+R
Sbjct: 684 IKTLYYIR 691


>gi|183601892|ref|ZP_02963261.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190382|ref|YP_002967776.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195788|ref|YP_002969343.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218777|gb|EDT89419.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240248774|gb|ACS45714.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250342|gb|ACS47281.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793369|gb|ADG32904.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 698

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 150/685 (21%), Positives = 256/685 (37%), Gaps = 77/685 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310
            E     ++       +        L                +LG    Y  Y L     
Sbjct: 39  RERLRYLVDHHYYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYALKTFDG 98

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
              +E  PQ    R A          E  A+   + +    F  +TPT  N G     + 
Sbjct: 99  EHYLEDFPQ----RAAAVSLALADGDEPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 154

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GV+P +
Sbjct: 155 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 214

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   +     IPD+
Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 274

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547
             +   +     LFSP    D+  +YG  F       + +    + ++ +  I A   + 
Sbjct: 275 TFELAKRREKMALFSP---YDVERVYGVPFADVNVTAKYEEMLADDRIRKTFIDAREFFT 331

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEET 597
            +  + FE+G+P++ F+D  N  +P             +  V   +   E    +     
Sbjct: 332 TLAEIQFESGYPYLLFEDTANAANPIDGRITMSNLCSEILQVQEPSTYYEDLSYAHVGRD 391

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+             LA  + TA+R L  V    +   +    ++N    AI
Sbjct: 392 VSCNLGSLNIARAMD------AGLAGPVETAIRALTAVSQHTHIGAVPSIARANEEGHAI 445

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715
           GLG M     L    I Y SPEA++  +   E ++FHA  AS  LA E G A++ F  S 
Sbjct: 446 GLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFADSA 505

Query: 716 WDQGVFPIDSIGLLAE--------------VRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           + +     +      +              + +   +   +   W EL+  +   G+ N 
Sbjct: 506 YARQPSDGNYFDKYLDGSLDTEPRTGTVRALFERFGVRIPTARDWRELQGEILRDGIYNQ 565

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
              A+ PT +I+ I   + SI P    + ++     G       ++ N+           
Sbjct: 566 YLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND----------- 614

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                  ++  A+EI    ++++ +     +DQ  SL L+  + 
Sbjct: 615 --------------------NLDLYDDAYEIGWKAIVDTYAEATPHVDQGLSLTLFFPDT 654

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
            + + L+     AW  G+KT YY+R
Sbjct: 655 VTTRDLNKAQIYAWRKGIKTLYYIR 679


>gi|30019504|ref|NP_831135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 14579]
 gi|29895048|gb|AAP08336.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus cereus
           ATCC 14579]
 gi|157955304|gb|ABW06021.1| NrdE [Bacillus thuringiensis serovar aizawai]
 gi|157955327|gb|ABW06039.1| NrdE [Bacillus thuringiensis serovar entomocidus]
 gi|157955331|gb|ABW06042.1| NrdE [Bacillus thuringiensis serovar galleriae]
 gi|157955335|gb|ABW06045.1| NrdE [Bacillus thuringiensis serovar kurstaki]
 gi|157955343|gb|ABW06051.1| NrdE [Bacillus thuringiensis serovar tolworthi]
 gi|157955351|gb|ABW06057.1| NrdE [Bacillus thuringiensis serovar colmeri]
 gi|157955379|gb|ABW06078.1| NrdE [Bacillus thuringiensis serovar ostriniae]
 gi|157955395|gb|ABW06090.1| NrdE [Bacillus thuringiensis serovar tohokuensis]
 gi|157955404|gb|ABW06097.1| NrdE [Bacillus thuringiensis serovar wuhanensis]
          Length = 694

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|194468107|ref|ZP_03074093.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           reuteri 100-23]
 gi|194452960|gb|EDX41858.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           reuteri 100-23]
          Length = 723

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 158/710 (22%), Positives = 280/710 (39%), Gaps = 72/710 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        L  E F    E             +  +  L   LK + 
Sbjct: 34  KLALEDFIKNNVEPNTKNFSSL-KERFQWLEENDYIEEGFMNKYSEAFIEKLYEYLKAQN 92

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y +Y L  N     +      RVAM         E+ A++  + +   
Sbjct: 93  FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMQLADEIIHQ 151

Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + + +R
Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFALQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 212 EAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V QNA   LFSP +V     +YG  F       E  
Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDV---ERVYGMPFSYVDITKEYD 328

Query: 529 A-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +    +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+E
Sbjct: 329 NLVANDDIRKKKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCSE 386

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N     + +    S NL +    N  +      +I+  +R L  + D+ +
Sbjct: 387 IAQVQVPARVNDDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVED 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS 
Sbjct: 447 LDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASN 506

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKR 752
           E+A+E +  +  F+ S +  G +    +      + ++               W  LK++
Sbjct: 507 EIAKERQETFHDFENSKYADGSYFEKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKNLKEK 566

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811
           V   G+ N   +A+AP  + + I   + S+ P    +  +   M G       +L N+  
Sbjct: 567 VMKDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSND-- 624

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A+++D   +I++ +  Q+ IDQ+ 
Sbjct: 625 -----------------------------TMPYYRSAYDMDMRKVIDTYAAAQQHIDQSL 655

Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           S+ L++                   + + L+ +   A+  G+K+ YY+R+
Sbjct: 656 SMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705


>gi|19745565|ref|NP_606701.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS8232]
 gi|19747688|gb|AAL97200.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus
           pyogenes MGAS8232]
          Length = 726

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 170/751 (22%), Positives = 303/751 (40%), Gaps = 83/751 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    ++           L  +     I EG   + + ++  +  +    +    + 
Sbjct: 30  KEAVRRYLEEHVSPDQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88

Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                 +G    Y  Y L        +E  +    R  M         +    +  + + 
Sbjct: 89  YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TPT  N+G +   +  SC+L  V D++  I  A+  +  L+K  GG+    T 
Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD +
Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +   D++ R   +     IPD+  +   +N    LFSP    D+   YGK+        E
Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    + +  ISA   ++ +  + FE+G+P++ F D  N R+P    G +  SNLC
Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382

Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI   S+              E   CNLGSIN+         D       I T++R LD
Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438

Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V  + + +     +  N  + A+GLG+M     L   HI Y + EAV+  D     +++
Sbjct: 439 RVSRVSDLNCAPSVEAGNAANHAVGLGVMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744
           +A  AS +LA+E+GA++ F  S +  G +    +    + +         +      +  
Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDVKPQTAKVATLLQDYGFTLPTVA 558

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S     V +
Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863
           +                              +I       +   A+E+ P  +I+  +  
Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648

Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + +  +  
Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
           L   P     ++T             EC+ C
Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724


>gi|15672957|ref|NP_267131.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723918|gb|AAK05073.1|AE006332_2 ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. lactis Il1403]
 gi|326406519|gb|ADZ63590.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus
           lactis subsp. lactis CV56]
          Length = 722

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 170/715 (23%), Positives = 289/715 (40%), Gaps = 81/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E    Y +     ++E        E      +  L  +L    
Sbjct: 32  KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 91  FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+   R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V      YGK F       E  
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 ++ +  I+A  L +++  +  E+G+P+I   D  N  +P    GV+  SNLC+E
Sbjct: 327 KMVANPEIRKTSINARELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    ++     +  ++I   VR L  +
Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSSN----EFGTSIEAMVRALTFI 440

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +   T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ 
Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LPW 746
           + AS +LA E+  ++ +F+ S +  G +    +           +    +         W
Sbjct: 501 LVASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSSKVQELFKGIAVPTIEDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
             L+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +     G        
Sbjct: 561 TALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP--- 617

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                    L  E +                        + +A++ D   +I+  +   +
Sbjct: 618 ------AAGLATETI----------------------PYYKSAYDTDMRAVIDVYAAATE 649

Query: 866 WIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 650 HVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|300859088|ref|YP_003784071.1| ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686542|gb|ADK29464.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206795|gb|ADL11137.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis C231]
 gi|302331349|gb|ADL21543.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277041|gb|ADO26940.1| Ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium
           pseudotuberculosis I19]
          Length = 719

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 172/733 (23%), Positives = 286/733 (39%), Gaps = 71/733 (9%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              L+   + +   L   +        R    +   +     +        H+++    E
Sbjct: 16  TEQLDYHALNALLNLYNADGKIQFDKDREAANQFFLQ-----HVNQNTVFFHDLE----E 66

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                +E       + E      +  L       +     +LG    Y  Y L   +G R
Sbjct: 67  KIEYLVENNYYEPGIIEKYEFAFIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRR 126

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +    RV M         +  A    + + +  F  +TPT  NSG     +  SC
Sbjct: 127 YLERFED---RVCMVALTLADGDQNLARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSC 183

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    + +R  GA I     +S GVIP +K+ 
Sbjct: 184 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLL 243

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 244 EDSFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDITFE 303

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKML 550
              +N    LFSP    D+  +YGK F     +        + ++ + KI+A   ++ + 
Sbjct: 304 LAKRNDDMYLFSP---YDVERVYGKAFADISVSEHYAEMVEDPRIRKSKINAREFFQTIA 360

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLG 603
            + FE+G+P+I F+D  N  +P    G V+ SNLC+EI         N       V    
Sbjct: 361 EIQFESGYPYIMFEDTVNKANPI--EGRVNMSNLCSEILQVNTPSLFNDDLTYEEVGEDI 418

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +       D    A TI TA+R L  V +    +++   +K N    AIGLG M 
Sbjct: 419 SCNLGSLNIAMTMDSPDFAKTIETAIRGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMN 478

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
               L   HI Y S E ++  +     + +  + AS +LA+ER   +  F+ S +  G +
Sbjct: 479 LHGYLGREHIYYGSEEGLDFTNAYFAAVLYQCLVASNKLARERGRTFVGFETSKYATGEY 538

Query: 722 -----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                P D      +V    A   +   +   W +LK  V   G+ N    A+ PT +I+
Sbjct: 539 FDGFDPADFAPKTEKVAKIFADSSIYTPTAADWADLKDSVAAHGLYNRYLQAVPPTGSIS 598

Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I   + SI P    + ++     G        + N                        
Sbjct: 599 YINHSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDN------------------------ 634

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
                  +     A A+EI    +I++ +   K++DQ  SL L+  +  + + ++     
Sbjct: 635 -------ENLDYFADAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIY 687

Query: 892 AWLMGLKTTYYLR 904
           AW  G+KT YY+R
Sbjct: 688 AWRKGIKTLYYIR 700


>gi|188025724|ref|ZP_02959589.2| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827]
 gi|188020254|gb|EDU58294.1| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827]
          Length = 723

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 168/674 (24%), Positives = 279/674 (41%), Gaps = 60/674 (8%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + E      + E      +  L       +     +LG    Y  Y L   +G
Sbjct: 69  KEKLDFLVNENYYEPQVIEQYDFAFIKKLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDG 128

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA          V   + + S  F  +TPT  N G +   +L 
Sbjct: 129 KRYLERYEDRVCMVALTLAQGNQALASYLV---DEIISGRFQPATPTFLNCGKKQRGELV 185

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K
Sbjct: 186 SCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMK 245

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 246 MLEDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 305

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +   +N    LFSP ++   + +   E     E Y    +   IK ++ I+A   ++ +
Sbjct: 306 FQLAKENKEMYLFSPYDIEREYGVPMSEIS-VTEKYHEMVNNKAIKKYK-INAREFFQTL 363

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--SSSEETAVCNL----- 602
             + FE+G+P+I F+D  N  +P    G ++ SNLC+EI      S  E  +        
Sbjct: 364 AEIQFESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNRPSFYEDDLSYREVGKD 421

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661
            S NL +       D    A ++  A+R L  V D+ +  ++   ++ NH   AIGLG M
Sbjct: 422 ISCNLGSMNIAKMMDAPDFAQSVAIAIRALTAVSDMSHIRSVPSIEQGNHQSHAIGLGQM 481

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720
                L    I Y S EA++  +     I++HA+  S +LA ER   +  F+ S +  G 
Sbjct: 482 NLHGYLARERIHYGSEEALDFTNIYFYTITYHALKTSNQLAIERKATFKGFEHSEYANGR 541

Query: 721 FPIDSIGL--------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I          + E+     +   ++  W  LK+ V   G+ N N  AI PT +I
Sbjct: 542 YFDKYINQSWLPKTQTVQELFRRSGIEIPTQADWLSLKQSVMEHGIYNQNLQAIPPTGSI 601

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G       F+ N+                      
Sbjct: 602 SYINNSTSSIHPIVARIEIRKEGKIGRVYYPAPFMNND---------------------- 639

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                      + +  A++I P  +I++ +   + +DQ  SL L+  D+ + + ++    
Sbjct: 640 ---------NLEYYQDAYQIGPEKIIDTYAVATQHVDQGLSLTLFFKDDATTRDINRAQI 690

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 691 YAWRKGIKTLYYIR 704


>gi|167838948|ref|ZP_02465725.1| ribonucleotide reductase system [Burkholderia thailandensis MSMB43]
          Length = 843

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 146/654 (22%), Positives = 263/654 (40%), Gaps = 80/654 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y         +     + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGDE----QTVDDIYRRVARGIAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---RRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+D LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQLDGGASAFDWDALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + ++     R IG+G  G   AL +L + Y + E  + A      +   A 
Sbjct: 352 LDVTLWPLLEQRREAEQKRRIGIGFTGLGDALVMLGLRYDTQEGRDFAARVGREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA++ F  S +                   L     +    D++++ ++ 
Sbjct: 412 RASVELARERGAFALFDASRY-------------------LEEGTFASRLPDDIQEAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
               E     L    G  G+++ +PD       +A ++     +   +  Q +ID + S 
Sbjct: 502 TFAVEDYAYRLYRELG--GDVDALPD----CFVSALQMSAHDHLAMMAAVQPYIDTSISK 555

Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
            + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 556 TVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609


>gi|157955317|gb|ABW06031.1| NrdE [Bacillus thuringiensis serovar pakistani]
          Length = 694

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|157955400|gb|ABW06094.1| NrdE [Bacillus thuringiensis serovar toumanoffi]
          Length = 694

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+   GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|88801651|ref|ZP_01117179.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Polaribacter irgensii 23-P]
 gi|88782309|gb|EAR13486.1| ribonucleoside-diphosphate reductase , alpha subunit 1
           [Polaribacter irgensii 23-P]
          Length = 592

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 150/648 (23%), Positives = 255/648 (39%), Gaps = 124/648 (19%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
                 + L   Y           P+     +A        + +  + +FY  +++ ++ 
Sbjct: 40  LTENSRKFLESGYLTGKT-----TPEERIREIADNAEGI-LKMKGFSDKFYKYMAAGYYS 93

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            S+P   N G +     SCF + V DD+  I  +  E  M++K  GG    +  +R  GA
Sbjct: 94  LSSPVWSNFGKKRGLPISCFGSHVADDMGDILYSQSEVGMMSKLGGGTSGYFGKLRKRGA 153

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            +   NG S G +  +++       V+QG  R+G    YL   H D++EFL++      +
Sbjct: 154 DVKN-NGSSSGSVHIMQLFEKMVDVVSQGSVRRGRFSPYLPVDHPDIKEFLEIGT----E 208

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                ++     + D +M+ +                                       
Sbjct: 209 GNPIQELTHGVTVSDQWMEEMIAGD----------------------------------- 233

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEIT 589
                  +   ++W K+L    E G+P+I F+D  N  +   +      +++SNLCTEI 
Sbjct: 234 -------VEKRSIWAKILQRRGEIGYPYILFRDNANNGTVDVYKDKNHEIYASNLCTEIM 286

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------------ 637
           L S+ + + VC L SINL        ++  K    + T    LD V++            
Sbjct: 287 LPSNDDWSFVCCLSSINL------VHYEEWKDTDAVETLAYFLDAVMEEFITKLEVYKDS 340

Query: 638 ------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
                      +EKA      +RA+GLG +G+ S L    + + S EA ++  E  + I 
Sbjct: 341 SKRDDQFTFRFMEKAYNFAKDNRALGLGALGWHSLLQSKMLAFDSQEAYDLNTEIFKVIK 400

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +  AS E+A   G  +  KG                                      
Sbjct: 401 EKSYKASEEMATLYGEPAVLKG-------------------------------------- 422

Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
                G RN+   AIAPT + A I G VSQ I+P + N+YVK       T+ N  L   L
Sbjct: 423 ----YGRRNTTLNAIAPTTSSAFILGQVSQGIEPIWSNIYVKDIAKIKTTIRNPVLEKLL 478

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + +      +   ++ +DGS+ ++  + D  K++  T  EID   ++  A+ RQ  IDQ 
Sbjct: 479 EDKGESTSDVWKSIRDNDGSVQHLAILTDAEKEVFKTYSEIDQKVIVYQAANRQNHIDQG 538

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
           QS+N+ +  +   K+++ +Y  AW +G+K+ YY  S +A    K    
Sbjct: 539 QSINIMVHPDMPIKEVNDVYITAWKLGVKSMYYQHSMNAAQKFKQKKD 586


>gi|157955359|gb|ABW06063.1| NrdE [Bacillus thuringiensis serovar darmstadiensis]
          Length = 694

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|157955371|gb|ABW06072.1| NrdE [Bacillus thuringiensis serovar indiana]
          Length = 694

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|152964773|ref|YP_001360557.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus
           radiotolerans SRS30216]
 gi|151359290|gb|ABS02293.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus
           radiotolerans SRS30216]
          Length = 720

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 169/721 (23%), Positives = 284/721 (39%), Gaps = 69/721 (9%)

Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY---------FCRYIEEGV 264
           P+Y  + A   L     E         + A  + +Q + P               +E G 
Sbjct: 20  PSYHTLNAMLNLWD--EEGKIQFEADVEAARQYFLQHVNPRTRRFPTFEARLAHMVENGY 77

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324
             + + +      +  L +     +     +LG    Y  Y L       E  + F  R 
Sbjct: 78  YEQHVLDQYSPDFVRSLTDRAHAAKFRFATFLGAFKFYTSYALKSFDGT-EYLEGFEDRA 136

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383
            M         E  A    + + +  F  +TPT  N+G     +L SCFL  + DD+  I
Sbjct: 137 VMTALTLAVGDEALATAIVDEVIAGRFQPATPTFLNAGKASRGELVSCFLLRIEDDMESI 196

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
              +     L+K  GG+    + +R  GA I     +S GVIP +K+  D+    NQ G 
Sbjct: 197 GRGINSALQLSKRGGGVALLLSNIREYGAPIKRIQNQSSGVIPVMKLLEDSFSYANQLGA 256

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +    N    LFS
Sbjct: 257 RQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEPMHLFS 316

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWIT 562
           P    D+  +YGK F     +   +    + ++ +  I A   ++ +  + FE+G+P+I 
Sbjct: 317 P---YDVERVYGKPFGDVAVSEHYREMVADDRIRKTQIDAREFFKTLAELQFESGYPYIV 373

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQ 615
           F+D  N  +P    G ++ SNLC+EI   ++    A            S NL +      
Sbjct: 374 FEDTVNKANPI--AGRINMSNLCSEILQVNTPSTLAEDLTYSEIGKDISCNLGSLNIALA 431

Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            D   L  ++ TAVR L  V    +  ++      N    AIGLG M     L    + Y
Sbjct: 432 MDGGNLGQSVETAVRALTAVSVASDIQSVPSVAYGNSKSHAIGLGQMNLHGYLARERVHY 491

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------- 726
            S E ++  +     + FHA+ AS  +A ER   +  F+ S +  G F    +       
Sbjct: 492 GSEEGIDFTNVYFAAVLFHALRASNAIAIERGETFEGFENSKYADGTFFDKYLENDFLPA 551

Query: 727 -GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
              +A +  +  +   +R  W +LK  V   G+ N N  A+ PT +I+ I   + SI P 
Sbjct: 552 TERVAGLFADAGIALPTRAEWAQLKASVVEHGIFNQNLQAVPPTGSISYINNSTSSIHPI 611

Query: 786 YQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
              + ++     G       F+ N+                                 + 
Sbjct: 612 ASKIEIRKEGKLGRVYYPAPFMTND-------------------------------NLEY 640

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYL 903
           +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+
Sbjct: 641 YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYI 700

Query: 904 R 904
           R
Sbjct: 701 R 701


>gi|75759354|ref|ZP_00739451.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74493186|gb|EAO56305.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|157955363|gb|ABW06066.1| NrdE [Bacillus thuringiensis serovar dendrolimus]
 gi|157955375|gb|ABW06075.1| NrdE [Bacillus thuringiensis serovar morrisoni]
          Length = 694

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|221316491|ref|ZP_03598296.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 568

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 167/597 (27%), Positives = 275/597 (46%), Gaps = 80/597 (13%)

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LS+ +   +TPTL N+G     LSSCF+ T  D L GIF    + +  +K   G+G  + 
Sbjct: 1   LSNLYLTLATPTLMNAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFG 60

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G+ I G  G + G++ ++K  ++TAV+V+Q G+R GAV  YL+ WH D+E+F+DL
Sbjct: 61  KLRATGSDIRGHKGAASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDL 120

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF------- 518
           R NTGD  +R +++ T   IPD FM++V +   + LF P E+        ++F       
Sbjct: 121 RLNTGDKSKRAYNVFTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLG 180

Query: 519 --------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                   + A+  +            R++ A+ L ++ +    ETG P++ ++D  N  
Sbjct: 181 EKETPNPIDHAWTYHYYLCVDNNNLDKRRVPAIELKKRYMKAQLETGIPYMFYRDTVNRN 240

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE---------------------ETAVCNLGSINLLA 609
           +P  H G+++SSNLC+EI  N S                       +   CNL S+ +  
Sbjct: 241 NPNSHSGMIYSSNLCSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNR 300

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              +   +       I+  +R LDNVI +    + +A+ +N  +RA+G G  G  + L  
Sbjct: 301 TEKDGVTE-----RVIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQ 355

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             I + S +A+E   +  E I  + I AS  L +E+G+Y  F+GS W  G          
Sbjct: 356 EGIMWDSEQAIEYISKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG---------- 405

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
               +       +   W E+K+      MRN    AIAPT   + I G +  IDP +  +
Sbjct: 406 ----EWFEERDLNSPEWLEVKELASKY-MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVI 460

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +        ++   L    K    +   M  +               ++ K++   A 
Sbjct: 461 YFERKKDFHLPILVPELNQ--KTWFFYKPTMKMEY--------------ENEKQL---AH 501

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               +W I+  + RQK++DQA S N Y+  +   K    ++ + W  G+KT+YY RS
Sbjct: 502 ----LWAIKHNAARQKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 554


>gi|219682806|ref|YP_002469189.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219620456|gb|ACL28613.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|289178105|gb|ADC85351.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 708

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 150/685 (21%), Positives = 256/685 (37%), Gaps = 77/685 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310
            E     ++       +        L                +LG    Y  Y L     
Sbjct: 49  RERLRYLVDHHYYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYALKTFDG 108

Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
              +E  PQ    R A          E  A+   + +    F  +TPT  N G     + 
Sbjct: 109 EHYLEDFPQ----RAAAVSLALADGDEPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 164

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D++  I   +     L+K  GG+    + +R  GA I     +S GV+P +
Sbjct: 165 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 224

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G R+GA   YL   H D+ +FLD ++   D++ R   +     IPD+
Sbjct: 225 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 284

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547
             +   +     LFSP    D+  +YG  F       + +    + ++ +  I A   + 
Sbjct: 285 TFELAKRREKMALFSP---YDVERVYGVPFADVNVTAKYEEMLADDRIRKTFIDAREFFT 341

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEET 597
            +  + FE+G+P++ F+D  N  +P             +  V   +   E    +     
Sbjct: 342 TLAEIQFESGYPYLLFEDTANAANPIDGRITMSNLCSEILQVQEPSTYYEDLSYAHVGRD 401

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656
             CNLGS+N+             LA  + TA+R L  V    +   +    ++N    AI
Sbjct: 402 VSCNLGSLNIARAMD------AGLAGPVETAIRALTAVSQHTHIGAVPSIARANEEGHAI 455

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715
           GLG M     L    I Y SPEA++  +   E ++FHA  AS  LA E G A++ F  S 
Sbjct: 456 GLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFADSA 515

Query: 716 WDQGVFPIDSIGLLAE--------------VRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           + +     +      +              + +   +   +   W EL+  +   G+ N 
Sbjct: 516 YARQPSDGNYFDKYLDGSLDTEPRTGTVRALFERFGVRIPTARDWRELQGEILRDGIYNQ 575

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
              A+ PT +I+ I   + SI P    + ++     G       ++ N+           
Sbjct: 576 YLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND----------- 624

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                  ++  A+EI    ++++ +     +DQ  SL L+  + 
Sbjct: 625 --------------------NLDLYDDAYEIGWKAIVDTYAEATPHVDQGLSLTLFFPDT 664

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
            + + L+     AW  G+KT YY+R
Sbjct: 665 VTTRDLNKAQIYAWRKGIKTLYYIR 689


>gi|330889423|gb|EGH22084.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 264

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 144/266 (54%), Positives = 185/266 (69%), Gaps = 20/266 (7%)

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           GAY +F+GSLW +G+ P+DS  +L E R    + ++    L W  ++ RV+  G+RNSN 
Sbjct: 2   GAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNI 60

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD  MI+D
Sbjct: 61  MAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMIND 120

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           LKY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGK
Sbjct: 121 LKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGK 180

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT-------------- 929
           KLD  YR AW  GLKT YYLR+ +ATS EKST+    GKLNAV                 
Sbjct: 181 KLDVTYRMAWYRGLKTPYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRP 238

Query: 930 DPNSSTHSLGIPSSC-TSDTECEVCQ 954
              +      +P +C   + +CE CQ
Sbjct: 239 TEAAPVGPAPVPKACAIDEPDCEACQ 264


>gi|311068262|ref|YP_003973185.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           atrophaeus 1942]
 gi|310868779|gb|ADP32254.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           atrophaeus 1942]
          Length = 700

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 153/697 (21%), Positives = 290/697 (41%), Gaps = 58/697 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E + + +             L  E     +E               D+  +      ++
Sbjct: 30  KEAVHSYFVDYINQNTVFFHDL-KEKLDYLVENQYYEEEFLSLYSFADIKEVFKTAYAKK 88

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y+ Y L  N     +E  +    R+++          ++A ++  L+ 
Sbjct: 89  FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDTEKAKDYVRLMI 145

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  STPT  N+   R  +L SCFL  V D L  I  A+  +  L+K  GG+  + + 
Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +
Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K + D+  R   ++    IPD F++   ++    +F P  +      YG+  +    N  
Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEM 322

Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   +V + KI+A  L  K+  +  E+G+P+I F+D  N      HV  V  SNLC
Sbjct: 323 YDKFVDNPRVKKEKINARKLLEKLAVLRSESGYPYIMFQDNVNKEHALNHVSKVKFSNLC 382

Query: 586 TEITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +E+         +  +E     L  S NL +    N  ++  +  T++ A   L +V + 
Sbjct: 383 SEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNILNVMEHKSIEHTVKLATDSLTHVSET 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +       +++N   ++IGLG M     L    I Y SPEA + A+     ++F++I  
Sbjct: 443 TDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQR 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELK 750
           S ELA+E+G  +  ++GS +  G +       D      ++      M+  +   W +LK
Sbjct: 503 SAELAKEKGATFEQYEGSSYATGEYFDKYVSNDFSPAYEKIAALFEGMHIPTIEDWKQLK 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   GM +S  + IAPT +I+ +   + S+ P  + +  ++  +              
Sbjct: 563 AFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP-------- 614

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  +    +  A+++D   +++  +  Q+ IDQ 
Sbjct: 615 -----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQG 651

Query: 871 QSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
            S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 652 ISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|325571549|ref|ZP_08147049.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156025|gb|EGC68221.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           casseliflavus ATCC 12755]
          Length = 719

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 156/710 (21%), Positives = 276/710 (38%), Gaps = 74/710 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +           +     IE         +      +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTLTFATATDK-INYLIENDYLEEEFIKKYRPAFIEDLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FTFKSFMAAYKFYSQYALKTNDGTAYLERYED---RVAFNALYFADGNEELAMSLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G   + 
Sbjct: 148 YQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V      YG  F       E
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKE---YGVPFSYVDITKE 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   ++ +  I A  L  ++  +  E+G+P+I   D  N        G +  SNLC
Sbjct: 325 YDNLVMNPRIRKTKIRARDLENEISKLQQESGYPYIINIDTANR--SNPIDGKIIMSNLC 382

Query: 586 TEITLNSSSEE-------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI    +  E         +    S NL +    N  D      ++R   R L  V D 
Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIVNLMDSPDFGKSVRAMTRALTFVTDA 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +   +  N  +  IGLG MG  +      + Y SPE++E  D     +++  +  
Sbjct: 443 SDIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNYWTLVE 502

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELK 750
           S  +A+E+   + +F+ S +  G +  D I    + + E        +   +   W  L 
Sbjct: 503 SNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPTGEDWAALA 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809
           + VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L NE
Sbjct: 563 QTVKETGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSNE 622

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                              + +A+++D   +I+  +  QK +DQ
Sbjct: 623 TIG-------------------------------YYKSAYDMDMRKVIDVYATAQKHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             S+ L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 652 GMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|55821275|ref|YP_139717.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus LMG 18311]
 gi|55823188|ref|YP_141629.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus CNRZ1066]
 gi|116628013|ref|YP_820632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           thermophilus LMD-9]
 gi|55737260|gb|AAV60902.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus
           LMG 18311]
 gi|55739173|gb|AAV62814.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus
           CNRZ1066]
 gi|116101290|gb|ABJ66436.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Streptococcus thermophilus LMD-9]
 gi|312278605|gb|ADQ63262.1| Ribonucleoside-diphosphate reductase [Streptococcus thermophilus
           ND03]
          Length = 719

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 158/716 (22%), Positives = 283/716 (39%), Gaps = 86/716 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +     IE                +  L+ ++  ++
Sbjct: 32  KEALRAFFLENVKPNSMAFNSITDK-INYLIENDYIESEFIGKYEPAFIEKLSAEIHAQK 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N   + +E  +    RV           E  A +  N + 
Sbjct: 91  FRFQSFMAAYKFYQQYALKTNDGETYLESFED---RVLFNALYFADGDENLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  +   +      +      Y+
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSIEKEYGK-PYNYIDITAMYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIINIDTANRHNPI--DGKIVMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +          +I+T  R L  
Sbjct: 384 EILQVQTPSELNDSQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  +     +++ 
Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESIEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
            +  S  +A+E +  +  F+ S +  G +    +          + E+ +   + +    
Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRVKELFEGHFIPQA--K 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G      
Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP- 615

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                                            +  D    + +A+++D   +I+  +  
Sbjct: 616 ------------------------------ANGLSTDTIPFYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKLTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|296330953|ref|ZP_06873428.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674471|ref|YP_003866143.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151958|gb|EFG92832.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412715|gb|ADM37834.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 700

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 151/697 (21%), Positives = 289/697 (41%), Gaps = 58/697 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E + + +             L  E     IE               D+  +      ++
Sbjct: 30  KEAVHSYFVDYINQNTVFFHDL-KEKLDYLIENQYYEEEFLSLYSFEDIKAVFKTAYAKK 88

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y+ Y L  N     +E  +    R+++          ++A E+ NL+ 
Sbjct: 89  FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDTEKAKEYVNLMI 145

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  STPT  N+   R  +L SCFL  V D L  I  A+  +  L+K  GG+  + + 
Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +
Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K + D+  R   ++    IPD F++   ++    +F P  +      YG+  +    N  
Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEM 322

Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   +V + KI+   L  K+  +  E+G+P+I F+D  N      H+  V  SNLC
Sbjct: 323 YDKFVDNPRVKKEKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLC 382

Query: 586 TEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +E+   S          E  +    S NL +    N  ++  +  T++ A   L +V + 
Sbjct: 383 SEVLQASQVSSYTDYDVEDEIGLDISCNLGSLNILNVMEHKSIEKTVKLATDSLTHVSET 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +       +++N   ++IGLG M     L    I Y SPEA + A+     ++F++I  
Sbjct: 443 TDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQR 502

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELK 750
           S E+A+E+   +  ++GS +  G +       D      ++ +    M+  +   W +LK
Sbjct: 503 SAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFEGMHIPTTEDWKQLK 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
             V   GM +S  + IAPT +I+ +   + S+ P  + +  ++  +              
Sbjct: 563 AFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP-------- 614

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                  +  +  +    +  A+++D   +++  +  Q+ +DQ 
Sbjct: 615 -----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHVDQG 651

Query: 871 QSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
            S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 652 ISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|258654101|ref|YP_003203257.1| vitamin B12-dependent ribonucleotide reductase [Nakamurella
           multipartita DSM 44233]
 gi|258557326|gb|ACV80268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Nakamurella multipartita DSM 44233]
          Length = 988

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/654 (19%), Positives = 229/654 (35%), Gaps = 62/654 (9%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382
           V  G    E + E    E   +L    F  ++P  FN GT+   Q+S+CF+ +V D +  
Sbjct: 124 VEHGYFATEQDTEIFEHELTWMLLHQVFAFNSPVWFNVGTKSPQQVSACFILSVDDTMDS 183

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I    +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G 
Sbjct: 184 ILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGG 242

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTA 482
             R+ A    L+  H D+ EF++ +       R                   +  + N +
Sbjct: 243 ATRRAAKMVVLDVDHPDIAEFVETKAREEHKIRVLRDAGFDMDLGGDDIISVQYQNANNS 302

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V  +                                      +V   + A
Sbjct: 303 VRVSDEFMRAVDADTDEGASFGLRARQT-----------------------GEVIETVDA 339

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             L+ K+    +E   P I + D  N        G + +SN C+E        + + CNL
Sbjct: 340 RELFGKITQAAWECADPGIQYDDTINDWHTSPESGRISASNPCSEYMH----LDNSSCNL 395

Query: 603 GSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
            S+NL+     +  FD    A  +   +  +D  I       +   ++   +R +G+G  
Sbjct: 396 ASLNLMKFLSEDGTFDAPTFARAVEFVITAMDISICFADFPTQPIAETTRAYRQLGIGYA 455

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
              + L      Y S     +A      ++  A   S ELA   G Y  +  +       
Sbjct: 456 NLGALLMATGHAYDSEGGRSLAAAITSLMTGVAYRRSAELAGVVGPYEGYARNADAHKRV 515

Query: 722 PIDSIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                     VR    ++ A+ + +   W +     +  G RN+    +APT TI  +  
Sbjct: 516 IRKHAAANDYVRSIGGNDGAVLKLATTVWQDTVAIGERNGYRNAQASVLAPTGTIGLMMD 575

Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833
             +  I+P    + + K    G   +VN  +   LK      E++ + ++Y    G + +
Sbjct: 576 CDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPGALKSLGYQAESIEAIVEYIAEHGHVVD 635

Query: 834 IERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
              +  +   +   A     I PM  +   +  Q +I  A S  + + E  +   +  IY
Sbjct: 636 APGLRREHYSVFDCAMGERSIAPMGHVRMMAAVQPFISGAISKTVNMPEHATVADVAEIY 695

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           +Q W MGLK     R         S      G+ +A       +   +      
Sbjct: 696 QQGWKMGLKALAIYRDNCKVGQPLSASNKNHGEKSADASVGAAAEVTAAPAAPV 749


>gi|171060924|ref|YP_001793273.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leptothrix cholodnii SP-6]
 gi|170778369|gb|ACB36508.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leptothrix cholodnii SP-6]
          Length = 1007

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 151/637 (23%), Positives = 238/637 (37%), Gaps = 75/637 (11%)

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379
           RVA  LA  E    +E     F        F+ +      +GT     L +CF+  V D 
Sbjct: 59  RVAAALASVEAPEARELWTERFL-AAQERGFVPAGRIASAAGTTLSATLINCFVQPVGDS 117

Query: 380 -------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                    GI+ AL E A   +  GG+G D++ +R  GA +  T   + G + +++V +
Sbjct: 118 IAEPEEGFPGIYTALTEAAETMRRGGGVGYDFSRIRPYGAWVGSTQSHASGPVSYMRVFD 177

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H DVE F+  +     D+    + N +  + D+FMK 
Sbjct: 178 RSCETVESAGSRRGAQMGVLRCDHPDVEAFIHAK-----DKGDLKNFNISVGVTDVFMKA 232

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +    L    E  +     G            +     + V+R + A  LW +++  
Sbjct: 233 VEADTDVDLVHKAEPGEKQKAAG-----------ARQRADGLWVYRSVRARDLWDQIMRS 281

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P + F D  N  +   +   + ++N C E  L         C LGS++L     
Sbjct: 282 TYDHAEPGVLFLDRINQDNNLSYCETIAATNPCAEQPLPPY----GCCCLGSVDLTHFVQ 337

Query: 613 NNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   FD    A    TA R+LDNV+D     +   ++     R +GLG  G   AL
Sbjct: 338 RPFESDASFDDAAFAEVCATATRMLDNVLDATVWPLPAQQQEAANKRRVGLGFTGLGDAL 397

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L + Y +P A  +A    E +   A  AS +LAQERGA+  F   L+  G        
Sbjct: 398 IMLGLRYDTPAARAMATHISEVMRDAAYIASSDLAQERGAFPLFNADLYLSG-------- 449

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPS 785
                      N  +      +K+ ++  G+RNS+ ++IAPT TI+       S  I+P 
Sbjct: 450 -----------NSFASRLPAAVKEHIRVNGLRNSHLLSIAPTGTISLAFADNASNGIEPP 498

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y +     D T    F V +   R                   +++     L    
Sbjct: 499 FSWTYTRKKREADGTFK-EFAVEDHAWRLY----------------RHLKGADAPLTDAF 541

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA E+         +     ID + S  + +  +   +    +Y  AW  GLK     R
Sbjct: 542 VTALEMSAEAHESMVAAVAPCIDTSISKTVNVPADYPYEDFQGLYMAAWKSGLKGLATYR 601

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             S      S    V           P +   SLG P
Sbjct: 602 PNSVLGSVLSVTPTVPVVAETAATPQPLTVPVSLGTP 638


>gi|189490616|ref|YP_001957186.1| hypothetical NrdA [Pseudomonas phage 201phi2-1]
 gi|164609681|gb|ABY63290.1| hypothetical NrdA [Pseudomonas phage 201phi2-1]
          Length = 764

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 175/823 (21%), Positives = 305/823 (37%), Gaps = 84/823 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
            I+  DGT   FN+ +     E     L+D V    ++ ET + + + +S    + ALI 
Sbjct: 4   NIIKLDGTQEPFNAAKANRWCEWGTENLKDKVDWSSIVMETIQTLPETVSSQAFQMALIE 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +  TL  +  ++     R     + + +  T      KA H  MQ               
Sbjct: 64  N--TLSHRTWSHYLFAGRLYAVWIHKHLYGTDGIPTVKALHTRMQK-------------- 107

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFFM 322
              ++       D + +   +K++ DF   +  L  +  +Y     + G+  E PQ  ++
Sbjct: 108 DGLMVKLKYNTQDYLKIEKFIKHDLDFEQPHFALHQIRKKYALGNRVTGAEYESPQFTYI 167

Query: 323 RVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           R+AM LA  E +  + +   +FY L +       TP   N GT H   +SC L  V D+ 
Sbjct: 168 RMAMALAENEPKATRLQVVRDFYELFAYKKLSAPTPNYINLGTSHRGFASCCLFAVGDNG 227

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             +         + + S G+G +    R +G  + G      G   +      + VA  Q
Sbjct: 228 TSLALGNYIGDKMTQMSAGIGVNIM-TRAVGDAVRGGLFAHHGKKKYYDAMGKSIVANVQ 286

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G+  GAV  + E++  +VE    LR       RR  DM+ A      F K+   N    
Sbjct: 287 AGRG-GAVTCFFESFDQEVEMIQGLRNPLSTPDRRNRDMHFAMLTNRFFAKKAASNEQIF 345

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            F+P    DLH+ +  +    +     + ++ E      +SA  + R+ L    ETG  +
Sbjct: 346 AFNPYTAPDLHEAFYGKDIEEFIRLYEKYEKDESFTKHWMSARDILRRSLKEAQETGVAY 405

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------ETAVCNLGSINLLAH 610
           +   D  N  +P   +  +HSSNLC EI   +S            +     + + +L A 
Sbjct: 406 VGQIDEMNRHTPF--LDPIHSSNLCMEIAEPTSPYYEMEDLVSREDHGRGEIATCSLAAV 463

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
              N  +  +       A++++D  I  + + I   + +     + G+G+MG  + L   
Sbjct: 464 SVENIENDKEYEKVCYYALKMIDYCILNSTYVIPHLEFTAKQRMSAGVGMMGLATHLAKN 523

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y S           E   +  I AS+ +++ERG       + W  G  PID+     
Sbjct: 524 GLDYTSNAGKREIHWIAERHMYFMIKASIAISKERGLAPWIHKTKWPAGWLPIDTYQRAV 583

Query: 731 EVR-DELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           +   D    +      W++L+  V   G + +S  +A  P  + +   G + SI P  + 
Sbjct: 584 DNIIDPKGSSFDYTYNWEKLRAEVVANGGIAHSVLIAYMPGESSSKALGGANSIYPVRRL 643

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
                                L + D  +    +     D S+             +  A
Sbjct: 644 --------------------TLSKNDQNNHLYWAAPYGDDPSV------------KYQFA 671

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLY-----LDEPSGKKLDFIYRQAWLMGLKTTYYL 903
           ++I    LI+  +  QK+ DQ  S + Y      +E    +L   Y     MG+KT YY 
Sbjct: 672 WDIPTKDLIDCYAIFQKFTDQGISADFYRRIVGTEEIDSNELLKDYFYMVKMGMKTRYYF 731

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                     +T    +  L A+     NS   ++     CT 
Sbjct: 732 ----------NTETTANLSLEAMESAIDNSGNAAMCSADGCTL 764


>gi|257865183|ref|ZP_05644836.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871508|ref|ZP_05651161.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257874805|ref|ZP_05654458.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257799117|gb|EEV28169.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805672|gb|EEV34494.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257808971|gb|EEV37791.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 719

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 156/710 (21%), Positives = 276/710 (38%), Gaps = 74/710 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +           +     IE         +      +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTLTFATA-MDKINYLIENDYLEEEFIKKYRPAFIEQLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FTFKSFMAAYKFYSQYALKTNDGTAYLERYED---RVAFNALYFADGNEELAMSLADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G   + 
Sbjct: 148 YQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V      YG  F       E
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKE---YGVPFSYVDITKE 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   ++ +  I A  L  ++  +  E+G+P+I   D  N        G +  SNLC
Sbjct: 325 YDNLVMNPRIRKTKIRARDLENEISKLQQESGYPYIINIDTANR--SNPIDGKIIMSNLC 382

Query: 586 TEITLNSSSEE-------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI    +  E         +    S NL +    N  D      ++R   R L  V D 
Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIVNLMDSPDFGKSVRAMTRALTFVTDA 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +   +  N  +  IGLG MG  +      + Y SPE++E  D     +++  +  
Sbjct: 443 SDIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNYWTLVE 502

Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELK 750
           S  +A+E+   + +F+ S +  G +  D I    + + E        +   +   W  L 
Sbjct: 503 SNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPTGEDWAALA 562

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809
           + VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L NE
Sbjct: 563 QTVKETGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSNE 622

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                              + +A+++D   +I+  +  QK +DQ
Sbjct: 623 TIG-------------------------------YYKSAYDMDMRKVIDVYATAQKHVDQ 651

Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             S+ L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 652 GMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|126802153|ref|YP_068342.2| ribonucleotide reductase subunit 1 [Suid herpesvirus 1]
          Length = 790

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 164/648 (25%), Positives = 280/648 (43%), Gaps = 55/648 (8%)

Query: 302 YDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYNLLSSF 349
            + Y   +   R E    FF+R            +A+ L   +   E     ++  L++ 
Sbjct: 153 EEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFD-AYFRALATQ 211

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLAKYSGGLGNDWTPV 407
             + +TP +  +G     L+SC+L           +     E A +    GG+G      
Sbjct: 212 AIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLSLQSF 271

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR- 466
                    +   ++G++  LK  +    A+N   +R   VC Y+E WH DV   L++R 
Sbjct: 272 NRT-----PSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRG 326

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEI 520
               D+  R  ++ +  W PDLF +R        +   WTLF  D  S L  L+G +F  
Sbjct: 327 MLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAR 385

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-V 579
            YE  ER     E      +    +   ++     TG P++  KD CN        G  +
Sbjct: 386 EYERLERLGLGVE-----SLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDTRGAAL 440

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            +SNLCTEI   ++  E  VCNL S+NL A  A   FD+  L    R A   ++ ++ I 
Sbjct: 441 ATSNLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIG 500

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +    + +     R++G+GL G  + +  L +  A P A  +     E + +  + ASV
Sbjct: 501 NYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASV 560

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           EL +     +  F+ S + +GV P D+          +++    R  WD L+ R+   G+
Sbjct: 561 ELCERGLRPFDGFEHSRYARGVMPFDAYER-------VSLREPMR--WDALRVRIAEHGV 611

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDL 815
            N+  +A+ PT + + +   S+   P++ N++ K  +SG+    N  L+  L++   R+ 
Sbjct: 612 YNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPREC 671

Query: 816 WDEAMISDLKYHDGSIGNI-ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                ++ L+    S+      +P         TAFE D   LI+  + R  ++D +QS+
Sbjct: 672 ARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCADRAPFVDHSQSM 731

Query: 874 NLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           +L+L EP+  KL       +  +A+ +GLKT  YY + R AT+    T
Sbjct: 732 SLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGVFT 779


>gi|238059797|ref|ZP_04604506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. ATCC 39149]
 gi|237881608|gb|EEP70436.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. ATCC 39149]
          Length = 611

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/655 (25%), Positives = 254/655 (38%), Gaps = 87/655 (13%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMC 353
           L  R        RIE       RVA GL   E E           A  F  L++   F  
Sbjct: 18  LGRRVTGPDGAVRIESVDDLLDRVATGLGAVEREYGADESTARVWAARFRALMAENRFWP 77

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           S   L N GTR  QL+SCF+  V DDL  IF  L+  A   +  GG G D TP+R  GA 
Sbjct: 78  SGRILNNCGTRQGQLASCFVLPVEDDLGAIFDTLKLAASCHRTGGGTGFDLTPLRERGAP 137

Query: 414 IHGTNGK-SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           I       S G + +L + +     V QGGK +GA  A L   H DV EF+D +   G  
Sbjct: 138 ISTAEAAGSSGPVSWLHLFDAETGVVMQGGKMRGANLASLSVRHPDVFEFIDAKAVVG-- 195

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
             R  + N +  + D FM+ +       L SP                            
Sbjct: 196 --RLANFNLSVTVDDAFMRTLIDGGEIDLVSP---------------------------V 226

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLN 591
             +  R++ A  +WR++    + TG P + F D  N  +P    +G + ++N C E TL 
Sbjct: 227 GGRPRRRVPAAEIWRRISAQAWRTGDPGLLFTDMINRANPLLDRLGPIRTTNPCGEQTLY 286

Query: 592 SSSEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
                     LGS+NL      + + D  +L  T+  AVR+LDN ID + +   +     
Sbjct: 287 PYEPS----TLGSVNLRAMTGPDGRLDTARLERTVEDAVRLLDNSIDASHYPDPRITAMA 342

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
             +R +GLG+MGF   L  L + Y S  A+ + DE    I   A + +  LA ERG + +
Sbjct: 343 RGNRRLGLGVMGFADLLIALGVRYDSTRALAVVDEVGGRIRAVAEATTRRLAAERGTFPN 402

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F  + +D                                        +RN     IAPT 
Sbjct: 403 FDPARFDAP--------------------------------------VRNCAVTTIAPTG 424

Query: 771 TIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+ + G S  I+P +  ++ K+ +  G  + V+  L  ++      D      L     
Sbjct: 425 TISMVAGCSSGIEPRFAPIWRKNVLVDGGVSYVDEDLAADVCAHGGVDPEQARRLIRER- 483

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
            +  +  +P+ ++  +  A ++   W +  A++ Q+ ID A S  + L  + S   +  +
Sbjct: 484 PVTELP-MPEPVRDRYRYAHDVPGEWHVRIAAQWQRHIDNAVSKTVNLPRDCSVDDVAEV 542

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
              +W +G K     R  S     +       G     P+     +    G  + 
Sbjct: 543 LTASWRLGCKGVSVYRQGSREQDLQEVAGARTGTDRPTPLAGDAGTGIDTGTGAV 597


>gi|1710393|sp|P50643|RIR1_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|437736|emb|CAA50976.1| ribonucleotide reductase [Suid herpesvirus 1]
 gi|525264|emb|CAA56775.1| ribonucleotid reductase, large subunit [Suid herpesvirus 1]
 gi|40253967|tpg|DAA02162.1| TPA_exp: large subunit of ribonucleotide reductase [Suid
           herpesvirus 1]
 gi|1090509|prf||2019240A ribonucleotide reductase:SUBUNIT=large
          Length = 835

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 164/648 (25%), Positives = 280/648 (43%), Gaps = 55/648 (8%)

Query: 302 YDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYNLLSSF 349
            + Y   +   R E    FF+R            +A+ L   +   E     ++  L++ 
Sbjct: 198 EEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFD-AYFRALATQ 256

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLAKYSGGLGNDWTPV 407
             + +TP +  +G     L+SC+L           +     E A +    GG+G      
Sbjct: 257 AIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLSLQSF 316

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR- 466
                    +   ++G++  LK  +    A+N   +R   VC Y+E WH DV   L++R 
Sbjct: 317 NRT-----PSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRG 371

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEI 520
               D+  R  ++ +  W PDLF +R        +   WTLF  D  S L  L+G +F  
Sbjct: 372 MLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAR 430

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-V 579
            YE  ER     E      +    +   ++     TG P++  KD CN        G  +
Sbjct: 431 EYERLERLGLGVE-----SLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDTRGAAL 485

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639
            +SNLCTEI   ++  E  VCNL S+NL A  A   FD+  L    R A   ++ ++ I 
Sbjct: 486 ATSNLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIG 545

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            +    + +     R++G+GL G  + +  L +  A P A  +     E + +  + ASV
Sbjct: 546 NYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASV 605

Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           EL +     +  F+ S + +GV P D+          +++    R  WD L+ R+   G+
Sbjct: 606 ELCERGLRPFDGFEHSRYARGVMPFDAYER-------VSLREPMR--WDALRVRIAEHGV 656

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDL 815
            N+  +A+ PT + + +   S+   P++ N++ K  +SG+    N  L+  L++   R+ 
Sbjct: 657 YNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPREC 716

Query: 816 WDEAMISDLKYHDGSIGNI-ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                ++ L+    S+      +P         TAFE D   LI+  + R  ++D +QS+
Sbjct: 717 ARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCADRAPFVDHSQSM 776

Query: 874 NLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATSVEKST 915
           +L+L EP+  KL       +  +A+ +GLKT  YY + R AT+    T
Sbjct: 777 SLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGVFT 824


>gi|117620070|ref|YP_855408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561477|gb|ABK38425.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 715

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 149/668 (22%), Positives = 268/668 (40%), Gaps = 63/668 (9%)

Query: 282 ANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           A+ L   +D +FE +     L  +  + I+G+  E  Q    RVA+ LA +E++ +    
Sbjct: 13  ASRLIPLQDTSFEIWDSKYRLKSKDGVPIDGTIDETCQ----RVALALAGQESQPDVWYE 68

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAK 395
            F   L +     +     N+G    +      +C ++ T+ D +  I G + E  +  K
Sbjct: 69  PFLWALRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLK 127

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
              G+G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  
Sbjct: 128 AGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIR 187

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS------- 508
           H DV EF+  ++    +  R    N +  I + F+K V ++A W L  P           
Sbjct: 188 HPDVVEFIQAKR----EDGRLRQFNLSLLITEEFVKAVKEDAPWQLIFPYTAREVEQDGI 243

Query: 509 ---DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
              D   ++  ++         +  +   KV++ + A  LW  ++T  ++   P     D
Sbjct: 244 TLDDPTQVFWADWPNREGVVFNELGQVACKVYKTLPARKLWNVIMTSTYDYAEPGFILID 303

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDK 620
             N  +       + ++N C E  L         C LGS+NL     +       FD+  
Sbjct: 304 KVNQMNNNWFCEEIRATNPCGEQPLPPY----GACLLGSVNLTRFVRDPFAEQAAFDWSA 359

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
               +    R+LDNV++IN   + + ++   + R  G+G +G  SAL +L I Y S  AV
Sbjct: 360 FRKVVAIFTRMLDNVVEINQLPLARQREEIISKRRHGMGFLGLGSALTMLRIKYGSAAAV 419

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVR 733
              ++  + ++      S+ LA+E+G     +      G           D I L  +V+
Sbjct: 420 AFTEQVSQELAMTGWRESLALAKEKGPAPIMEQEFEVTGKLLRLRPEMAADGIKLGDKVK 479

Query: 734 DELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPS 785
            ++   R SR           L   +  +G R ++  +IAPT TI+       S  I+PS
Sbjct: 480 GKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPS 539

Query: 786 YQNLYVKSNMS---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           + + Y ++ +         V+ +    L  R+L + A +             E     L 
Sbjct: 540 FAHHYSRNVIKPGKKSKESVDVYSYELLAYRELVNPAAMPY----------AEDEATRLP 589

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
               TA +I P   ++  +  Q+WID + S    +  +   ++   IY  A   GLK   
Sbjct: 590 DYFITADDISPAQHVDIQAAAQRWIDSSISKTANVPTDFPFEQFKDIYLYASDSGLKGCT 649

Query: 902 YLRSRSAT 909
             R   A 
Sbjct: 650 TFRFNPAA 657


>gi|148543560|ref|YP_001270930.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri DSM 20016]
 gi|184152967|ref|YP_001841308.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri JCM 1112]
 gi|227363480|ref|ZP_03847602.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM2-3]
 gi|325681910|ref|ZP_08161428.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM4-1A]
 gi|148530594|gb|ABQ82593.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus reuteri DSM 20016]
 gi|183224311|dbj|BAG24828.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071494|gb|EEI09795.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM2-3]
 gi|324978554|gb|EGC15503.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           reuteri MM4-1A]
          Length = 723

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 158/709 (22%), Positives = 284/709 (40%), Gaps = 70/709 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        L  E F    E             +  +  L + LK + 
Sbjct: 34  KLALEDFIKNNVEPNTKRFSSL-KERFQWLEENDYIEETFMNKYSEAFIEKLYDYLKAQN 92

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y +Y L  N     +      RVAM         E+ A++  + +   
Sbjct: 93  FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMQLADEIIHQ 151

Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + + +R
Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 212 EAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V QNA   LFSP +V  ++ +     +I  E     
Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKEYNNLV 331

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           A+    K  +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI
Sbjct: 332 ANDDIRK--KKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCSEI 387

Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640
                    N     + +    S NL +    N  +      +I+  +R L  + D+ + 
Sbjct: 388 AQVQVPAQVNDDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVEDL 447

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   +  N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS E
Sbjct: 448 DVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASNE 507

Query: 701 LAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRV 753
           +A+E +  +  F+ S +  G +    +      + ++               W +LK+ V
Sbjct: 508 IAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKKLKENV 567

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812
              G+ N   +A+AP  + + I   + S+ P    +  +   M G       +L N+   
Sbjct: 568 MQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSND--- 624

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                                           + +A+++D   +I++ +  Q+ IDQ+ S
Sbjct: 625 ----------------------------TMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLS 656

Query: 873 LNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L++                   + + L+ +   A+  G+K+ YY+R+
Sbjct: 657 MTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705


>gi|54309322|ref|YP_130342.1| hypothetical protein PBPRA2142 [Photobacterium profundum SS9]
 gi|46913758|emb|CAG20540.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 716

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 143/658 (21%), Positives = 263/658 (39%), Gaps = 62/658 (9%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLA--LKETEKEKRAVEFYNL 345
           D A++   ++I   +Y L         E     F RVA  LA   K+  KE    EF   
Sbjct: 15  DIAYQSTSMEIWDSKYRLKTKHGIAIDETVDDTFKRVARALADLEKDKVKEHWYNEFLWA 74

Query: 346 LSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGL 400
           L +     +     N+G    +      +C ++ T+ D +  I G + E  +  K   G+
Sbjct: 75  LRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGI 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H D+ 
Sbjct: 134 GYDFSTLRPRGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDII 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV----------SDL 510
           +F+  ++    +  R    N +  I + F++ V  +  W+L  P                
Sbjct: 194 DFIRAKR----EDGRLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDNLDLHTD 249

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             +   ++ +     E +  R   K++R + A  LW  ++T  ++   P     D  N  
Sbjct: 250 SSVMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQM 309

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625
           +       + ++N C E  L         C LGSINL     +       FD+D     +
Sbjct: 310 NNNWFCEEIRATNPCGEQPLPPY----GACLLGSINLTKFVRDPFTNTAAFDWDGFRRVV 365

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            T  R+LDNV++IN   +EK +      R  G+G +G  S   +L   Y S  ++   ++
Sbjct: 366 ATFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLKHKYGSAASIAFTEQ 425

Query: 686 SMEFISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAM 738
             + ++      ++ LA+E+GA    +         +  +     D I +  +++ ++  
Sbjct: 426 VAQELAITGWKEALSLAKEKGAAPVMEQEFTITAKMIRQRPEMADDGIKVGDKIKGKVLH 485

Query: 739 NRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790
            + SR          EL + + T+G R ++  +IAPT TI+       S  I+PS+ + Y
Sbjct: 486 AKYSRYMQQVAEIEPELIEALSTVGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 545

Query: 791 VKS---NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++           VN +    L  R+L +   +        S     ++P+       T
Sbjct: 546 TRNVIVTGKKTKENVNVYSFELLAYRELVNSKAMPY------STDEETQLPE----YFIT 595

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           A +I P   ++  +  Q+WID + S    +  +   +    IY  A+  GLK     R
Sbjct: 596 ADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQDIYMNAYDKGLKGCTTFR 653


>gi|330720411|gb|EGG98732.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [gamma proteobacterium IMCC2047]
          Length = 715

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 138/665 (20%), Positives = 267/665 (40%), Gaps = 58/665 (8%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKE--TEKE 336
           L       +D   +   L I   +Y L   NG  ++    A F RVA  LA  E   + +
Sbjct: 5   LKAVSDEVKDIPLQDASLDIWDKKYRLKAKNGEAVDTDVDATFRRVARALADVETGKKNQ 64

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENA 391
           ++  E +        + +   + N+G +  +      +C ++ V  D +  I     E  
Sbjct: 65  EKWYEKFLWALRKGVIPAGRIISNAGAKEHKPATSTINCTVSAVIHDSMTDILTKNLEAG 124

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
           +  K   G+G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A 
Sbjct: 125 LTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMAT 184

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
            +  H DV EF+  ++    +  R    N +  I D F++ V   A W L  P    ++ 
Sbjct: 185 FDVGHPDVFEFIRAKR----EDGRLRQFNLSLLITDEFIQAVKDQADWQLAFPVTAKEVE 240

Query: 512 DLYGKEFEIAYENY------ERQADRGEI----KVFRKISAVALWRKMLTMLFETGHPWI 561
           +  G + E     +      E      E     +V++ + A  +W  +++  ++   P  
Sbjct: 241 N-DGIDLEGDDIIWRESPNSEDYVHNDEGLVACRVYKTVKAQRVWDAIMSSTYDFAEPGF 299

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----F 616
              D  N  +       + ++N C E  L         C LGS+NL     +       F
Sbjct: 300 ILIDKVNEMNNNWFCEQIRATNPCGEQPLPPY----GSCLLGSVNLTRFVVDPFTPNARF 355

Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
           D+D+    +    R+LDNV++IN   +E+ +      R  G+G +G  S   +L + Y  
Sbjct: 356 DWDEYRKVVSIFTRMLDNVVEINGLPLEQQRHEIQNKRRHGMGYLGLGSTTTMLGLKYGD 415

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----SLWDQGVFP---IDSIGLL 729
             ++E+ +   + ++      ++ELA+E+GA          +       P    D   + 
Sbjct: 416 EASLELTERVTKEMAMVGWETALELAEEKGAAPIMDEMFEVTPCMLRKRPEMAKDGYKVG 475

Query: 730 AEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQS 781
            +V  ++   + SR          EL +++   G R ++  +IAPT TI+       S  
Sbjct: 476 DQVAGKVLHAKYSRYMQQVAQENPELVEKLAEKGARFTHHTSIAPTGTISLSLANNASNG 535

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD- 840
           I+PS+ + Y ++ +               ++ D++   +++  +  +         P++ 
Sbjct: 536 IEPSFAHHYSRNVI--------REGRKTKEKVDVFSYELLAYRELVNPKAMPYSENPEEQ 587

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
           L +   +A +I P   ++  +  QKWID + S    +  +   +    IY  A+  GLK 
Sbjct: 588 LPEYFISADDIKPKQHVDVQAASQKWIDSSISKTANVPTDFPYQDFKDIYMYAYEQGLKG 647

Query: 900 TYYLR 904
               R
Sbjct: 648 CTTFR 652


>gi|261820461|ref|YP_003258567.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           wasabiae WPP163]
 gi|261604474|gb|ACX86960.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium
           wasabiae WPP163]
          Length = 721

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 166/679 (24%), Positives = 278/679 (40%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +EEG     + +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 68  EKLRYLVEEGYYEADVLDQYSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 127

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA         A    + + S  F  +TPT  N G +   +L S
Sbjct: 128 RYLERYEDRVCLVALALA---KGDTALASALVDEIISGRFQPATPTFLNCGKKQRGELVS 184

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+
Sbjct: 185 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 244

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 245 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 304

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +    N    LFSP    D+  +YG          +      + ++ +  I A   ++ +
Sbjct: 305 QLAKNNQVMYLFSP---YDVEQVYGMPLSEISVTEKYHEMVNDKRIRKSQIKAREFFQIL 361

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P++ F+D  N  +P    G ++ SNLC+EI                   + 
Sbjct: 362 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKD 419

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+    A+          T+  A+R L  V D+ +  ++   +K N    AI
Sbjct: 420 ISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAI 474

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L    I Y + EAV+  +     ++FHAI AS  LA E    +S F+ S 
Sbjct: 475 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 534

Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    I    E          ++  ++  ++  W  L++ V   G+ N N  A+ 
Sbjct: 535 YATGEYFDKYIEQQWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVP 594

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N+                 
Sbjct: 595 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND----------------- 637

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           + +  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 638 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 683

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 684 NKAQIYAWTKGIKTIYYIR 702


>gi|281491478|ref|YP_003353458.1| ribonucleoside-diphosphate reductase subunit alpha [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375196|gb|ADA64709.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 722

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 169/715 (23%), Positives = 289/715 (40%), Gaps = 81/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +T  +K+  +   +E    Y +     ++E        E      +  L  +L    
Sbjct: 32  KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y +  N   + + + F  RV M         EK A      + + 
Sbjct: 91  FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149

Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+   R  +  SCFL  + DD+  I   +     L+K  GG+G + T +R
Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G +G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V +     LF P  V      YGK F       E  
Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 ++ +  I++  L +++  +  E+G+P+I   D  N  +P    GV+  SNLC+E
Sbjct: 327 KMVANPEIRKTPINSRELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I    +                  CNLGS N+L    ++     +  ++I   VR L  +
Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSSN----EFGTSIEAMVRALTFI 440

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +   T+   +K N    AIGLG MG  S L    I Y S EAVE        ++++ 
Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LPW 746
           + AS +LA E+  ++ +F+ S +  G +    +           +    +         W
Sbjct: 501 LVASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSSKVQELFKGIAVPTIEDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
             L+  VKT G+ NS  MA+AP  +I+ I   S SI P    +  +     G        
Sbjct: 561 TALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP--- 617

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                    L  E +                        + +A++ D   +I+  +   +
Sbjct: 618 ------AAGLATETI----------------------PYYKSAYDTDMRAVIDVYAAATE 649

Query: 866 WIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++               ++ + + L  +   A+  G+KT YY+R+
Sbjct: 650 HVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704


>gi|228476825|ref|ZP_04061470.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           salivarius SK126]
 gi|228251399|gb|EEK10544.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           salivarius SK126]
          Length = 719

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 161/716 (22%), Positives = 281/716 (39%), Gaps = 86/716 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +     IE                +  L+ ++  ++
Sbjct: 32  KEALRAFFLENVKPNSMAFNSITDK-INYLIENDYIESEFIGKYEPAFIEKLSAEIHSQK 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV           EK A +  N + 
Sbjct: 91  FRFQSFMAAYKFYQQYALKTNDGESYLESIED---RVLFNALYFADGDEKLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   +      +      Y+
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGK-PYNYIDITAMYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANRHNPI--DGKIIMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +          +IR     L  
Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIRAMTCALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++ 
Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
            +  S  +A+E +  +  F+ S +  G +    +          + E+ D   + +    
Sbjct: 499 TLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRIKELFDGHFIPQA--K 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G      
Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP- 615

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                                            +  D    + +A+++D   +I+  +  
Sbjct: 616 ------------------------------ANGLSTDTIPFYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|118594264|ref|ZP_01551611.1| hypothetical protein MB2181_01310 [Methylophilales bacterium
           HTCC2181]
 gi|118440042|gb|EAV46669.1| hypothetical protein MB2181_01310 [Methylophilales bacterium
           HTCC2181]
          Length = 720

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 136/656 (20%), Positives = 261/656 (39%), Gaps = 63/656 (9%)

Query: 293 FEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSS 348
           F+ + + I   +Y L            Q  + RVA  LA  E   +++     F   L  
Sbjct: 21  FQSVSMDIWDKKYRLKSKQGTFVDNNIQDTYNRVAKALAEVEIPEKRDLWHERFVWALQR 80

Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGND 403
                +     N+G    +      +C ++ +  D +  I   ++E  +  K   G+G +
Sbjct: 81  GAI-PAGRITSNAGALEHKPATSTINCTVSGIIEDSMTDILDKVKEAGLTLKAGCGIGYE 139

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+
Sbjct: 140 YSTLRPKGAFVAGAGAYTSGPLSFMDIYDRMCFTVSSAGGRRGAQMATFDIAHPDVTDFI 199

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDL 513
             ++    +  R    N +  I   FM+ V  +  W L  P           ++ +   +
Sbjct: 200 KAKR----EDGRLRQFNLSCLITKEFMEAVKADGEWKLAFPITEKEAKEDQIDLKNNEQV 255

Query: 514 YGKEF--EIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
             +E+     Y    +  + G++  KV++ + A  LW  +++  ++   P     D  N 
Sbjct: 256 VWREWPVNGKYLTELKGKNAGKVACKVYKTLKAKRLWDIIMSSTYDYAEPGFILIDRVNE 315

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLAST 624
            +       + ++N C E  L         C LGSINL     N   D     +D+    
Sbjct: 316 MNNNWFCENIRATNPCGEQPLPPY----GACLLGSINLTKFVKNPFTDKAYFNWDEYKEV 371

Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +    R+LDNV++IN   +EK +      R  G+G +G  S+L ++ + Y   ++++  +
Sbjct: 372 VGIFTRMLDNVVEINGLPLEKQRDEIARKRRHGMGYLGLGSSLAMMQMVYGDEKSIKFTE 431

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKG-------SLWDQGVFPIDSIGLLAEVRDELA 737
           +    ++       V+LA+E+GA    +         L  +     D I +  ++  ++ 
Sbjct: 432 DVSRILAEEGWKTGVDLAKEKGAAPIMEELFEVTPAMLAMRPEMETDGIKIGDKLPGKVL 491

Query: 738 MNRTSRLPWD---ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVK 792
           M R SR        L+ ++   G+R S+  +IAPT TI+       S  I+PS+ + Y +
Sbjct: 492 MGRYSRYMQQFPKSLQDQIADQGVRFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYSR 551

Query: 793 SNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           + +         V+ F    L  R L ++  +   +  +          + L      + 
Sbjct: 552 NVIREGKKSKEKVDVFSFELLAYRHLINQKAMPFSEKEN----------EKLPDYFIDSS 601

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            I     ++  +  QKWID + S  + +  +   +    IY  A+  GLK     R
Sbjct: 602 TIQAKAHVDIQAAAQKWIDSSISKTINVPTDYDYEDFKSIYLYAYDKGLKGCTTFR 657


>gi|260904663|ref|ZP_05912985.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacterium
           linens BL2]
          Length = 718

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 166/678 (24%), Positives = 271/678 (39%), Gaps = 68/678 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E     ++          +     L  L    +        +LG    +  Y L     
Sbjct: 64  AERLEWLVDHDYYESGFLAAYTPEFLTALHEHARAAGHRFATFLGAFKFFTSYALKTFDG 123

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
              +       VA  L L     E+ A    + + S  F  +TPT  N+G     +L SC
Sbjct: 124 TTYLEGFEERVVATALYLG-QGDEQLATGLVDEMLSGRFQPATPTFLNAGKAQRGELVSC 182

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  V D+L  I  ++     L+K  GG+    + +R  GA I     ++ GV+P +K+ 
Sbjct: 183 FLLRVEDNLESIGRSVNSALQLSKRGGGVALLLSNLREAGAPIKQIENQASGVVPVMKIL 242

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 243 EDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFQ 302

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKML 550
               N    LFSP +V      YG        +          ++ +  +SA   +R + 
Sbjct: 303 LAKDNRDMHLFSPYDVQRE---YGTPLSDLSVSDHYDELVANPQIRKNTVSAREFFRTLA 359

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598
            + FE+G+P++ F+D  N  +P    G ++ SNLC+EI                   +  
Sbjct: 360 ELQFESGYPYVLFEDTVNRANPL--AGHINMSNLCSEILQTNTPSTYDNAIGYQEIGQDI 417

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+     +       L ST+ TAVR L +V D  N   +    K N    AIG
Sbjct: 418 SCNLGSLNIAQAMNS-----SDLGSTVETAVRALTSVSDQTNVDAVPSVAKGNDASHAIG 472

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716
           LG M     L    I Y S E ++  D     I++HAI AS ++A ER   ++ F+ S +
Sbjct: 473 LGQMNLHGYLASQRIHYGSEEGIDFTDIYFLTITYHAIRASNQIAIERGKTFAGFEDSTY 532

Query: 717 DQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
             G +       D       VR+  A   +   +   W+ L++ VK  G+ N+   A+ P
Sbjct: 533 ADGSYFDKYTQHDWQPATQRVRELFADAGVTIPAGEDWERLRESVKAQGIYNAYLQAVPP 592

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           T +I+ +   + SI P    + ++     G        +                     
Sbjct: 593 TGSISYVNNSTASIHPVAAKIEIRKEGKLGRVYYPAPHM--------------------- 631

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
                      DD    +  A+EI    +I++ +   + +DQ  SL L+  +  + + ++
Sbjct: 632 ----------TDDNVDFYQDAYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDTATTRDIN 681

Query: 887 FIYRQAWLMGLKTTYYLR 904
                AW  G+KT YY+R
Sbjct: 682 RAQIYAWRKGIKTLYYIR 699


>gi|260583951|ref|ZP_05851699.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158577|gb|EEW93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella
           elegans ATCC 700633]
          Length = 725

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 162/687 (23%), Positives = 276/687 (40%), Gaps = 71/687 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E     +E                +  L  ++  ++     ++     Y +Y L  N  
Sbjct: 58  DEKLDYLLEHDYLEEEFLNKYDREFVKSLMQEIYKKKFRFRSFMSAFKFYKQYALKTNDG 117

Query: 313 RIEMPQAFFM-RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370
             E     F  R+           E+ A +    +    +  +TPT  N+   R  +L S
Sbjct: 118 --ERYLERFEDRIVFNALFLADGDEQLARDLAEEMIHQRYQPATPTFLNAGRKRRGELVS 175

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL    DD+  I   +     L++  GG+G   + VR  G  I      S GV+P +K+
Sbjct: 176 CFLIQTTDDMNSIGRTINSALQLSRIGGGVGVSLSNVRAAGDPIKKIENASSGVVPIMKL 235

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F 
Sbjct: 236 LEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDKFY 295

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + +  +    LFSP +V  ++ +    +    + YE   +  EI+  + + A  L +++ 
Sbjct: 296 ELIKNDDMMYLFSPYDVERIYGV-PFSYVDITKEYENMVNNSEIRKSK-LRARDLEQEIS 353

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------EETAVCNLG- 603
            +  E+G+P+I   D  N  +P    G +  SNLC+EI    S       +E  V     
Sbjct: 354 KLQQESGYPYIVNIDTVNKANPI--DGKIIMSNLCSEILQVQSPSVINNAQEYEVLGTDI 411

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    N         +I  AVR L  V D  +   +   K  N     IGLG MG
Sbjct: 412 SCNLGSTNIVNLMQSPDFERSIEVAVRALTFVTDHSSIDAVPTVKNGNQKAHTIGLGAMG 471

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF 721
             +   L  + Y SPE++E+ D     ++F+ + AS ++A+ERG  +  F+ S +  G +
Sbjct: 472 LHTFFALNQMEYGSPESIEVTDLYFRLLNFYTLKASHKIAKERGVTFDGFEKSAYASGTY 531

Query: 722 PIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
                    E++ E        +   +   W +LK  V   G+ + N +AIAPT +I+ +
Sbjct: 532 FDAYTESDVEIKSEKVKEIFENLPIPTAEDWKQLKADVMADGLYHQNRLAIAPTGSISYV 591

Query: 776 CGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
              S S+ P  + +  +    +G       FL N                          
Sbjct: 592 NETSASLHPITRLIEERQEKKTGKTYYPAPFLSN-------------------------- 625

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------------- 880
                +    + +A++ID   +I+  +  QK IDQ  SL L++                 
Sbjct: 626 -----ETLPYYKSAYDIDMRKVIDVYAAAQKHIDQGMSLTLFMRSELPEGLYEWKNGRTR 680

Query: 881 --SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + + L+ +   AW  G+K+ YY+R+
Sbjct: 681 KMTTRDLNILRNYAWNKGIKSIYYVRT 707


>gi|227513707|ref|ZP_03943756.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           buchneri ATCC 11577]
 gi|227522502|ref|ZP_03952551.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083026|gb|EEI18338.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           buchneri ATCC 11577]
 gi|227090324|gb|EEI25636.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           hilgardii ATCC 8290]
          Length = 721

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 153/686 (22%), Positives = 276/686 (40%), Gaps = 75/686 (10%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--INGS 312
           F   IE         +      +  L   LK ++DF F  ++     Y +Y L    N  
Sbjct: 57  FDYLIENHYYEAGFIKKYPISFIEKLYQYLK-DQDFHFKSFMAAYKFYAQYALKTNDNDK 115

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
            +E    F  RVA          E+ A+   + +    +  +TP+  N+G ++  +  SC
Sbjct: 116 YLES---FLDRVAANALFFADGDEQLAMNLADEIIHQRYQPATPSFLNAGRQNRGEFVSC 172

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL    DD+  I   +     L++  GG+G + + +R  G  I    G + GV+P +K+ 
Sbjct: 173 FLIQSTDDMNTIGRTINSALQLSRIGGGVGINLSNLRAAGDPIKHIEGAASGVVPVMKLL 232

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G+R+GA   YL  +H D+  FL  +K   D++ R   ++    +PD + +
Sbjct: 233 EDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGAKKENADEKIRLKTLSLGVTVPDKYYE 292

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            V  +A   LFSP +V   + +     +I  E         +IK  + + A  L  ++  
Sbjct: 293 LVKADADMYLFSPYDVEREYGVPFSYVDITKEYDH-LVANDKIKKTK-VKARDLETEISK 350

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EETAVCNLG---S 604
           +  E+G+P+I   D  N        G +  SNLC+EI    +      E     LG   S
Sbjct: 351 LQQESGYPYIINIDTANR--ENPIDGRIVMSNLCSEILQVQTPSTVDNEQHYIKLGKDIS 408

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    N  +      ++ + VR L  V D  N   +   +  N    +IGLG MG 
Sbjct: 409 CNLGSTNIANMMNATNFGHSVESMVRALTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGL 468

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP 722
            S     H+ Y SPE++E        +++ ++ AS ++A+E    + +F+ S +  G + 
Sbjct: 469 HSYFAKSHMHYGSPESIEFTSVYFMLLNYWSLVASNKIAKERHQTFDNFEKSKYADGTYF 528

Query: 723 IDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
              +      + +        +   +   W  LKK V   G+ + N +A+AP  +I+ I 
Sbjct: 529 DKYLNHSYAPQSDKVKQLFHGITIPTNEDWVALKKAVMEDGLYHQNRLAVAPNGSISYIN 588

Query: 777 GVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             + S+ P    +  +  +  G       +L N+                          
Sbjct: 589 DTTASLHPIINRIEERQESKIGKIYYPAPYLSND-------------------------- 622

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--------------- 880
                    + +A+++D   +I+  +  Q  +DQ  +L L++                  
Sbjct: 623 -----TMPYYTSAYDMDMRKVIDIYAAAQVHVDQGMALTLFMRSTIPEGLYEWKNGRTDK 677

Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + + L+ +   A   G+K+ YY+R+
Sbjct: 678 MTTRDLNILRNYAHRKGIKSIYYIRT 703


>gi|121997262|ref|YP_001002049.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhodospira halophila SL1]
 gi|121588667|gb|ABM61247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhodospira halophila SL1]
          Length = 721

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 135/662 (20%), Positives = 257/662 (38%), Gaps = 68/662 (10%)

Query: 290 DFAFEYLGLQILYDRYF--LHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNL 345
           D   +   L I   +Y        +        + RVA  LA  E    K++   E +  
Sbjct: 18  DVPIQSASLDIWDKKYRLKTKTEEAVDSSIDETYQRVARALAEVEETEAKQEHWFERFLW 77

Query: 346 LSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGL 400
                 + +   + N+G    +      +C ++ T+ D + GI   + E  +  K   G+
Sbjct: 78  ALRHGAVPAGRIISNAGAWDHKPATSTINCTVSGTIHDSMDGILKRVHEAGLTLKSGAGI 137

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV 
Sbjct: 138 GYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDVT 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP----------DEVSDL 510
           +F+  ++    +  R    N +  I D FM+ +  +  W L  P           ++ D 
Sbjct: 198 DFIRAKR----EDGRLRQFNLSLLITDAFMQAMEADEEWPLAFPLTDDEVAAEGIDLQDP 253

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
             +  +E+            R   +++R++ A  LW  ++T  ++   P     D  N  
Sbjct: 254 EQVLWREWPTREGYVTDGEGRVACRIYRRVKARHLWNLIMTSTYDYAEPGFILIDQYNEL 313

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625
           +       + ++N C E  L         C LGSINL     +       FD+++    +
Sbjct: 314 NNNWFCEEIRATNPCGEQGLPPY----GACLLGSINLTMFVRDPFTPQARFDWEEFREAV 369

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
               R+LDN ++IN   +E+ +      R  G+G +G  S + +L + Y    +V   +E
Sbjct: 370 AVFTRMLDNTVEINGLPLEQQRAEIQRKRRHGMGFLGLGSTVTMLRMKYGDAASVAFTEE 429

Query: 686 SMEFISFHAISASVELAQERGAYSSFKG----SLWDQGVFPI---DSIGLLAEVRDELAM 738
             + ++       +ELA+E+G     +     +       P    D   +  ++   +  
Sbjct: 430 VAKQMALTGWRTGLELAKEKGPAPIMEEIYEITPELMRKRPELREDGYEVGEQIPGRVLW 489

Query: 739 NRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790
            R SR          EL   +  IG R ++  +IAPT TI+       S  I+PS+ + Y
Sbjct: 490 GRYSRYMQRIADEEPELVDELAQIGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 549

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-------DLKK 843
           V++             + E ++     +    +L  +   I   + +P+        L  
Sbjct: 550 VRNV------------IREGRKTKEPVDVFSFELLAYRHFIDG-DALPEGGEEGQGKLPD 596

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
              +A ++ P   ++  +  QKW+D + S    +  +   +    IYR A+  GLK    
Sbjct: 597 YFISADQVTPKQHVDIQAAAQKWVDSSISKTANVPTDYPYEDFKDIYRYAYQQGLKGCTT 656

Query: 903 LR 904
            R
Sbjct: 657 FR 658


>gi|322516574|ref|ZP_08069488.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           vestibularis ATCC 49124]
 gi|322124844|gb|EFX96268.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           vestibularis ATCC 49124]
          Length = 719

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 162/716 (22%), Positives = 283/716 (39%), Gaps = 86/716 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +     IE                +  L+ D+  ++
Sbjct: 32  KEALRAFFLENVKPNSMAFNNITDK-INYLIENDYIESEFIGKYEPAFIEKLSADIHTQK 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV           E  A +  N + 
Sbjct: 91  FHFQSFMAAYKFYQQYALKTNDGESYLESIED---RVLFNALYFADGDENLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   +      +      Y+
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGK-PYNYIDITAMYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANRHNPI--DGKIVMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +          +I+   R L  
Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++ 
Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
            +  S  +A+E +  +  F+ S +  G +    +          + E+ +   + +    
Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRIKELFEGHFIPQA--K 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G      
Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYPA 616

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
           + L                       S   I          + +A+++D   +I+  +  
Sbjct: 617 NSL-----------------------STDTIPF--------YTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|220917435|ref|YP_002492739.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955289|gb|ACL65673.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 928

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 127/651 (19%), Positives = 237/651 (36%), Gaps = 71/651 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E  +L+       ++P  FN     HPQ S+CF+  V D +  I  
Sbjct: 116 GYFASEGDAVAFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     + G  G++ G + F++  +  A  +  GGK R
Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNTAN 483
           + A    L+  H DV EF++ + +                        D     + N + 
Sbjct: 235 RAAKMVILDVDHPDVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D FM+ V ++  W                           +   R + +    I A 
Sbjct: 295 RVTDAFMRAVLEDREW---------------------------KLTARTDGQALETIRAR 327

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L R++    +  G P + F    N   P  +   +++SN C+E        + + CNL 
Sbjct: 328 DLMRQITEAAWLCGDPGMQFDTTINAWHPCPNTDRINASNPCSEYMF----LDDSACNLA 383

Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NL+   +    FD +     +   +   + ++    +      K++  +R +GLG   
Sbjct: 384 SLNLMHFRSIEGGFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYAN 443

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG--- 719
             + L    +PY S      A      ++  A + S  +A+  G ++ ++ +        
Sbjct: 444 LGALLMASGLPYDSDAGRACAAAITSLMTGEAYAMSARIAERMGPFAGYEKNRDPFLAVI 503

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
                 + L+     E  +   +R  W +  ++    G RN     +APT TI  +    
Sbjct: 504 RKHAQHVDLVDPTLVEAGLLAAARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCD 563

Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIE 835
           +  I+P    + Y K    G   +VN+ +   L++     E + S L++ D   +I    
Sbjct: 564 TTGIEPDIALVKYKKLVGGGMLKIVNNTVPLALQRLGYSSEEITSVLQFIDEVETIEGAP 623

Query: 836 RIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
            +  +   +   AF        I  M  I      Q ++  A S  + +    + + ++ 
Sbjct: 624 GLRPEHAAVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            Y ++W +GLK     R     S   +T K  + K +AV            
Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEEKKDAVEPRLARRRLPDE 734


>gi|227529512|ref|ZP_03959561.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350597|gb|EEJ40888.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           vaginalis ATCC 49540]
          Length = 723

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 155/707 (21%), Positives = 277/707 (39%), Gaps = 70/707 (9%)

Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
            L    +   K    +   +   Y     +         +   D  +  L + LK +   
Sbjct: 36  ALKDFIENNVKPNTKQFASVTARY-KWLEDNDYIEDGFMDKYSDAFIEKLYDYLKQQNFH 94

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351
              ++     Y +Y L  N     +      RVAM         E+ A+   + +    +
Sbjct: 95  FHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMILADEIIHQRY 153

Query: 352 MCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
             +TPT  N    R  +  SCF     D++  I   +     L+K  GG+G + + +R  
Sbjct: 154 QPATPTFLNVGRKRRGEFVSCFAIQPTDNMNTIGRTINSALQLSKIGGGVGINLSNLREA 213

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           GA I      + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K   
Sbjct: 214 GAPIKKIENAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENA 273

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D++ R   ++    +PD F + V ++    LFSP +V  ++      +    E Y+    
Sbjct: 274 DEKIRLKTLSLGVTVPDKFYELVEKDEDMYLFSPYDVERVYGK-PFSYVDITEEYDNMVA 332

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             EI   +K++A  L  ++  +  E+G+P+I   D  N        G +  SNLC+EI  
Sbjct: 333 NDEI-HKKKVNARDLEDEISKLQQESGYPYIINIDTVNR--DNPIDGKIVMSNLCSEIAQ 389

Query: 591 NS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHT 642
                          +    S NL +    N  +      +IR  VR L  + D+     
Sbjct: 390 VQTPSIVADDQSYETLGTDISCNLGSTNIANMMNTPDFGRSIRAIVRGLTRISDVESLDV 449

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +   KK N    +IGLG MG    L   HI Y SP AVE        +++ ++ AS E+A
Sbjct: 450 VPSIKKGNELSHSIGLGAMGLHGYLAKNHIQYGSPVAVEFTSVYFMLLNYWSLVASNEIA 509

Query: 703 QE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRVKT 755
           +E    + +F+ S +  G +    +      + +L     +         W +LK  V  
Sbjct: 510 KERHETFHNFEKSKYADGSYFDKYVSKDWGPKSDLVKKLFANIHIPTIDDWKKLKDDVMA 569

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRD 814
            G+ N   +A+AP  + + I   + S+ P    +  +   M G       +L N+     
Sbjct: 570 DGLYNEYRLAVAPNGSTSYINDSTASLTPIINRIEERQEKMIGKIYYPAPYLSND----- 624

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                                         + +A+++D   +I++ +  Q+ +DQ+ SL 
Sbjct: 625 --------------------------TMPYYRSAYDMDMRTVIDTYAAAQQHVDQSLSLT 658

Query: 875 LYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L++                ++ + + L+ +   A+  G+K+ YY+R+
Sbjct: 659 LFVRSTMPEGLYEWKNGRTNKMTTRDLNILRHYAYKKGIKSIYYVRT 705


>gi|157955347|gb|ABW06054.1| NrdE [Bacillus thuringiensis serovar alesti]
          Length = 694

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 161/712 (22%), Positives = 299/712 (41%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+   GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I   S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIADESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|50122259|ref|YP_051426.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612785|emb|CAG76235.1| ribonucleoside-diphosphate reductase 2 alpha chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 715

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 166/679 (24%), Positives = 278/679 (40%), Gaps = 72/679 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     +EEG     + +      +  L       +     +LG    Y  Y L   +G 
Sbjct: 62  EKLRYLVEEGYYEAEVLDQYHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 121

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +     VA+ LA         A    + + S  F  +TPT  N G +   +L S
Sbjct: 122 RYLERYEDRVCLVALALA---KGDTTLASALVDEIISGRFQPATPTFLNCGKKQRGELVS 178

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+
Sbjct: 179 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 238

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 239 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 298

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +    N    LFSP    D+  +YG          +      + ++ +  I A   ++ +
Sbjct: 299 QLAKNNQVMYLFSP---YDVEQVYGVPLSEISVTEKYHEMVNDKRIRKSQIKARDFFQIL 355

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P++ F+D  N  +P    G ++ SNLC+EI                   + 
Sbjct: 356 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKD 413

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+    A+          T+  A+R L  V D+ +  ++   +K N    AI
Sbjct: 414 ISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAI 468

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715
           GLG M     L    I Y + EAV+  +     ++FHAI AS  LA E    +S F+ S 
Sbjct: 469 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 528

Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    I    E          ++  ++  ++  W  L++ V   G+ N N  A+ 
Sbjct: 529 YATGEYFDKYIEQQWEPITARARELFEQAGIHIPNQQDWAALRESVIAHGIYNQNLQAVP 588

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       ++ N+                 
Sbjct: 589 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND----------------- 631

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                           + +  A+EI P  +I++ +   + +DQ  SL L+  +  + + +
Sbjct: 632 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 677

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 678 NKAQIYAWTKGIKTIYYIR 696


>gi|308173698|ref|YP_003920403.1| ribonucleoside-diphosphate reductase major subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606562|emb|CBI42933.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553368|gb|AEB23860.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           amyloliquefaciens TA208]
 gi|328911842|gb|AEB63438.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 700

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 288/696 (41%), Gaps = 56/696 (8%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E + + +             L  E     IE               ++  +      ++
Sbjct: 30  KEAVHSYFVDYINQNTVFFHDL-KEKLDYLIENQYYEEEFLSLYSFEEIKDVFKTAYAKK 88

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y+ Y L  N     +E  +    R+++          ++A ++  L+ 
Sbjct: 89  FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDAEKAKDYVRLMI 145

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  STPT  N+   R  +L SCFL  V D L  I  A+  +  L+K  GG+  + + 
Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +
Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K + D+  R   ++    IPD F++   ++    +F P  +   +  +  E +     YE
Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMD-MTAMYE 324

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
              D   +K  + ++A  L  K+  +  E+G+P+I F+D  N      HV  V  SNLC+
Sbjct: 325 ELVDNPRVKKEK-VNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFSNLCS 383

Query: 587 EITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           E+         +  +E     L  S NL +    N   +  +  T++ A   L +V +  
Sbjct: 384 EVLQASQVSAYTDYDEEDEIGLDISCNLGSLNILNVMKHKSIERTVKLATDSLTHVSETT 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +       +++N   ++IGLG M     L    I Y SPEA + A+     ++F++I  S
Sbjct: 444 DIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRS 503

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKK 751
            ELA+E+   +  ++GS +  G +    I        E        M+  +   W ELK 
Sbjct: 504 AELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFEGMHIPTIEDWKELKA 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811
            V   GM +S  + IAPT +I+ +   + S+ P  + +  ++  +               
Sbjct: 564 FVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP--------- 614

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                 +  +  +    +  A+++D   +++  +  Q+ IDQ  
Sbjct: 615 ----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQGI 652

Query: 872 SLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 653 SFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688


>gi|256391015|ref|YP_003112579.1| vitamin B12-dependent ribonucleotide reductase [Catenulispora
           acidiphila DSM 44928]
 gi|256357241|gb|ACU70738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Catenulispora acidiphila DSM 44928]
          Length = 994

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 125/601 (20%), Positives = 225/601 (37%), Gaps = 32/601 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E  + L    F  ++P  FN GT+   Q+S+CF+ +V D +  I  
Sbjct: 139 GYFATPQDAEIFEHELAHALLHQMFAFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILN 198

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 199 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 257

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+EEF+  +    D  R            D            T    
Sbjct: 258 RAAKMVVLDVDHPDIEEFVQTKAREEDKIRALR---------DAGFDMDLGGKDITSVQY 308

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWIT 562
              ++   +   EF  A +N ER   R     +V   + A  L+R +    +E   P + 
Sbjct: 309 QNANNSVRVT-DEFMHAVQNTERFGLRARQTGEVIETLDAKQLFRDIAKAAWECADPGLQ 367

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKL 621
           + D  N        G + +SN C+E      S + + CNL S+NL+     ++ FD +  
Sbjct: 368 YDDTINAWHTNPETGRITASNPCSEYL----SLDNSSCNLASLNLMKFLREDDTFDTETF 423

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              +   +  +D  I        +  ++    R +G+G     + L      Y S     
Sbjct: 424 VKMVELVITAMDISISFADFPTPEIGQTTRDFRQLGIGYANLGALLMATGHAYDSEGGRA 483

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELA 737
           IA      ++  A   S ELA   G Y+ F  +                  +     +  
Sbjct: 484 IAAAITSLMTGVAYRRSAELAGVVGPYNGFARNAKPHAAVMRKHADAADAYVPFEDFDKQ 543

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNM 795
           +   SR  W    +     G RN+    +APT TI  +  V +  ++P    + + K   
Sbjct: 544 ILELSRTEWQRGNEIGAANGWRNAQASLLAPTGTIGFMMDVDTTGVEPDLALVKFKKLVG 603

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---E 850
            G   +VN+ +   LK+     E + + ++Y    G + +   +  +   +   A     
Sbjct: 604 GGSMQIVNNTVPRALKRLGYQQEQIEAIVEYIGEQGHVVDAPGLKPEHYSVFDCAMGERS 663

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I PM  +   +  Q ++  A S  + +  E S + ++ IY + W +GLK     R+    
Sbjct: 664 IAPMGHVRMMAAIQPFLSGAISKTVNMPEEASIEDVEEIYFEGWKLGLKALAIYRNNCKV 723

Query: 910 S 910
            
Sbjct: 724 G 724


>gi|227510691|ref|ZP_03940740.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227189812|gb|EEI69879.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 721

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 153/686 (22%), Positives = 276/686 (40%), Gaps = 75/686 (10%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--INGS 312
           F   IE         +      +  L   LK ++DF F  ++     Y +Y L    N  
Sbjct: 57  FDYLIENHYYEAGFIKKYPISFIEKLYQYLK-DQDFHFKSFMAAYKFYAQYALKTNDNDK 115

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
            +E    F  RVA          E+ A+   + +    +  +TP+  N+G ++  +  SC
Sbjct: 116 YLES---FLDRVAANALFFADGDEQLAMNLADEIIHQRYQPATPSFLNAGRQNRGEFVSC 172

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL    DD+  I   +     L++  GG+G + + +R  G  I    G + GV+P +K+ 
Sbjct: 173 FLIQSTDDMNTIGRTINSALQLSRIGGGVGINLSNLRAAGDPIKHIEGAASGVVPVMKLL 232

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G+R+GA   YL  +H D+  FL  +K   D++ R   ++    +PD + +
Sbjct: 233 EDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGAKKENADEKIRLKTLSLGVTVPDKYYE 292

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            V  +A   LFSP +V   + +     +I  E         +IK  + + A  L  ++  
Sbjct: 293 LVKADADMYLFSPYDVEREYGVPFSYVDITKEYDH-LVANDKIKKTK-VKARDLETEISK 350

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EETAVCNLG---S 604
           +  E+G+P+I   D  N        G +  SNLC+EI    +      E     LG   S
Sbjct: 351 LQQESGYPYIINIDTANR--ENPIDGRIVMSNLCSEILQVQTPSTVDNEQHYIKLGKDIS 408

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    N  +      ++ + VR L  V D  N   +   +  N    +IGLG MG 
Sbjct: 409 CNLGSTNIANMMNATNFGHSVESMVRALTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGL 468

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP 722
            S     H+ Y SPE++E        +++ ++ AS ++A+E    + +F+ S +  G + 
Sbjct: 469 HSYFAKSHMHYGSPESIEFTSVYFMLLNYWSLVASNKIAKERHQTFDNFEKSKYADGTYF 528

Query: 723 IDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
              +      + +        +   +   W  LKK V   G+ + N +A+AP  +I+ I 
Sbjct: 529 DKYLNHSYAPQSDKVKQLFQGITIPTNEDWVALKKAVMEDGLYHQNRLAVAPNGSISYIN 588

Query: 777 GVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             + S+ P    +  +  +  G       +L N+                          
Sbjct: 589 DTTASLHPIINRIEERQESKIGKIYYPAPYLSND-------------------------- 622

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--------------- 880
                    + +A+++D   +I+  +  Q  +DQ  +L L++                  
Sbjct: 623 -----TMPYYTSAYDMDMRKVIDIYAAAQVHVDQGMALTLFMRSTIPEGLYEWKNGRTDK 677

Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + + L+ +   A   G+K+ YY+R+
Sbjct: 678 MTTRDLNILRNYAHRKGIKSIYYIRT 703


>gi|157955355|gb|ABW06060.1| NrdE [Bacillus thuringiensis serovar dakota]
          Length = 694

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 162/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  ++GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I   S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIADESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +     
Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  +      W                            + ++++++   LI+  +
Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688


>gi|259502688|ref|ZP_05745590.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
 gi|259169333|gb|EEW53828.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
          Length = 723

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 155/708 (21%), Positives = 282/708 (39%), Gaps = 70/708 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +  +    +   L    F    +     +   E      L  L + L  +  
Sbjct: 35  EALADFIAQNVRPNTKQFASLTDR-FQWLEDHDYIEKGFVEQYSPAFLAKLYDYLTAQNF 93

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
               ++     Y +Y L  +     +      RVAM         E+ A++  + +    
Sbjct: 94  HFHSFMAAYKFYAQYALRTDDKEYYLENYV-DRVAMNALYLADGDEELAMDLADEIIHQR 152

Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + + +R 
Sbjct: 153 YQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLSKIGGGVGINLSNLRE 212

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K  
Sbjct: 213 AGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKEN 272

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
            D++ R   ++    +PD F + V   A   LFSP +V  ++      +    + Y+   
Sbjct: 273 ADEKIRLKTLSLGITVPDKFYELVEAGADMYLFSPYDVERIYGK-PFSYVDITKEYDNLV 331

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              EI+  +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI 
Sbjct: 332 ANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRANPI--DGKIVMSNLCSEIA 388

Query: 590 LNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-H 641
                           +    S NL +    N  D      ++R  +R L ++ D+    
Sbjct: 389 QVQVPSKVADDQSYETLGTDISCNLGSTNIANMMDSPDFGRSVRAMMRGLTHISDVENLT 448

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
            +   K+ N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS E+
Sbjct: 449 VVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIEFTGVYFMLLNYWSLVASNEI 508

Query: 702 AQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDELKKRVK 754
           A+E +  + +F  S +  G +           + ++               W  LK++V 
Sbjct: 509 AKERQETFHNFAKSAYADGSYFDKYTTKDWGPQSDVVKALFQGIFIPGPADWQALKEKVM 568

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQR 813
             G+ N   +A+AP  + + I   + S+ P    +  +   M G       +L N+    
Sbjct: 569 QDGLYNEYRLAVAPNGSTSYINDSTASLTPITNRVEERQEKMIGKIYYPAPYLSND---- 624

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                          + +A++ID   +I++ +  Q+ +DQ+ SL
Sbjct: 625 ---------------------------TMPYYQSAYDIDMRKVIDTYAAAQQHVDQSMSL 657

Query: 874 NLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            L++                ++ + + L+ +   A+  G+K+ YY+R+
Sbjct: 658 TLFMRSTIPAGLYEWKDGRTNKMTTRDLNILRHYAYQKGIKSIYYIRT 705


>gi|282599613|ref|ZP_06257324.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
 gi|282568716|gb|EFB74251.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rustigianii DSM 4541]
          Length = 710

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 168/674 (24%), Positives = 279/674 (41%), Gaps = 60/674 (8%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + E      + E      +  L       +     +LG    Y  Y L   +G
Sbjct: 56  KEKLDFLVNENYYESEVLEQYEFQFIKQLFKQAYAHKFRFKTFLGAFKYYTSYTLKTFDG 115

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA         A    + + S  F  +TPT  N G +   +L 
Sbjct: 116 QRYLERYEDRVCMVALTLAQGSKS---LASLLVDEIISGRFQPATPTFLNCGKKQRGELI 172

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K
Sbjct: 173 SCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKHIENQSSGVVPVMK 232

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 233 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 292

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            +    N    LFSP +V   + +   E     E Y    +   IK F+ I+A   ++ +
Sbjct: 293 FQLAKNNEDMYLFSPYDVQREYGVAMSEIS-VSEKYHEMVNNKAIKKFK-INAREFFQTI 350

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE--ITLNSSSEETAVCNLG---- 603
             + FE+G+P+I F+D  N        G ++ SNLC+E       S+ E  +        
Sbjct: 351 AEIQFESGYPYILFEDTANR--ENPIAGRINMSNLCSEILQVNQPSTYEDDLNYKTVGKD 408

Query: 604 -SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLM 661
            S NL +    +  D    A +I TAVR L  V D++  +++    + N    AIGLG M
Sbjct: 409 ISCNLGSMNIASTMDSPDFALSIETAVRALTAVSDMSYINSVPSIAQGNQQSHAIGLGQM 468

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGV 720
                L   HI Y S + ++  +     ++++A+  S +LA E +  +  F  S +  G 
Sbjct: 469 NLHGYLAREHIYYGSEQGLDFTNIYFYTVAYYALKTSNQLAIERQQTFDGFSASKYASGE 528

Query: 721 FPIDSIGLLAEVRDELA--------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I  +   + +          +   ++  W  LK+ V T G+ N N  AI PT +I
Sbjct: 529 YFDKYINKIWSPKTQTVQELFRRSGIKIPTQADWLALKQSVMTYGIYNQNLQAIPPTGSI 588

Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I   + SI P    + ++     G       F+ N                       
Sbjct: 589 SYINNSTSSIHPVVAPIEIRKEGKIGRVYYPAPFMTN----------------------- 625

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
                  ++LK  +  A++I P  +I++ +   + +DQ  SL L+ D + + + ++    
Sbjct: 626 -------ENLK-FYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGDATTRDINRAQI 677

Query: 891 QAWLMGLKTTYYLR 904
            AW  G+KT YY+R
Sbjct: 678 YAWRKGIKTLYYIR 691


>gi|229823056|ref|ZP_04449125.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271]
 gi|229787495|gb|EEP23609.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271]
          Length = 725

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 164/687 (23%), Positives = 287/687 (41%), Gaps = 73/687 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311
           E     ++     R   E      +  L +     +     ++     Y +Y L  N   
Sbjct: 59  EKINYLVDNDFIEREFIEKYPMEFIKELISSTYKMKFRFKSFMSAFKFYTQYALRTNDGA 118

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370
             +E  +    R+A          ++ AV   + + S  +  +TPT  N+   R  +L S
Sbjct: 119 RYLERYED---RIAFCALFLADGDQELAVRLRDEMISQRYQPATPTFLNAGRKRRGELVS 175

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  V DD+  I   +     L++  GG+G + + +R  G  I      S GV+P +K+
Sbjct: 176 CFLIQVSDDMNSIGRTINSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVVPVMKL 235

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F 
Sbjct: 236 LEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKVRVKTLSLGVVVPDKFY 295

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +   ++    LFSP +V  ++      +    E Y+   +  EI+  + ISA  L  ++ 
Sbjct: 296 ELAAKDEPMYLFSPYDVERIYGR-PFAYVDITEEYDNLVNNPEIRKSK-ISARDLENEIS 353

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCNLG 603
            +  E+G+P+I   D  N  +P    G +  SNLC+EI        +N+  E   +    
Sbjct: 354 KLQQESGYPYIVNIDTANRANPI--DGTITMSNLCSEILQVQRPSHINNRQEFEVLGTDI 411

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    N  +    AS++ TAVR L  V D  N   +   K  N     IGLG MG
Sbjct: 412 SCNLGSTNIPNMIESPDFASSVETAVRALTYVTDHSNIEAVPTVKHGNDLAHTIGLGGMG 471

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
             +   +  + Y SPE+VE+ +     ++++ + AS ++A+ER  ++ +F+ S +  G +
Sbjct: 472 LHTLFAINQMEYGSPESVELTEAYFYALNYYTLVASNKIAKERGKSFDNFENSKYATGEY 531

Query: 722 PIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
               I    +V  E        +   +   W  LK+ V   G+ + N +AIAPT +I+ +
Sbjct: 532 FDAYIQAPFQVTSEKVAAIMSKVALPTADDWRALKEAVAASGLYHQNRLAIAPTGSISYV 591

Query: 776 CGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
              S S+ P  + +  +    +G        L N                          
Sbjct: 592 NETSASLHPITRLIEERQEKKTGKTYYPAPMLSN-------------------------- 625

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------D 878
                +    + +A++ D   +I+  +  QK IDQ  SL L++                +
Sbjct: 626 -----ETLPYYKSAYDTDMRKVIDVYAAAQKHIDQGMSLTLFMRSELPEGMYEWKEGRTN 680

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + + + L+ +   AW  G+K+ YY+R+
Sbjct: 681 KMTTRDLNILRHYAWKKGIKSIYYVRT 707


>gi|158079505|ref|YP_001504318.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
 gi|157890349|dbj|BAF81477.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
          Length = 716

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 161/717 (22%), Positives = 289/717 (40%), Gaps = 85/717 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +   + +           L  +      E  +   ++ +      +  L   +  ++
Sbjct: 25  KEAVRAFFLEHVNKNTVFFYSLEEKISYLIREGYIDKTVITDKYSMEFIKKLFKFIYSKK 84

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++G    Y +Y +  +     +E  +    RVA          E+ A++  + L 
Sbjct: 85  FRFDTFMGAYRFYKQYAMKTDDGERYLERYED---RVAFNALTMGDGDEELAMKIADELI 141

Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TPT  N+G  R  +  SCFL  V D +  I   L     L+K  GG+G + + 
Sbjct: 142 NRRYQPATPTFLNAGRLRRGEYVSCFLIQVEDSMSSIGRTLNSALQLSKLGGGVGINLSN 201

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R LG  I G  G   GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL  R
Sbjct: 202 LRALGDPIKGIEGAGSGVVPVMKMLEDGFRYANQLGQRQGAGAVYLNVFHADIMDFLSTR 261

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   +  ++   ++    +PD F +         LFSP +V+  + +    F      Y 
Sbjct: 262 KENAESAKQIKTLSLGVVVPDKFYELAESGDVIHLFSPYDVAKEYGV-PFSFVDIDSEYN 320

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + ++A  L  ++  +  E+G+P+I      N  +P    G +  SNLC+
Sbjct: 321 NMIQNPNIR-SKVMNARDLEEEISRLQQESGYPYIMNVSTVNKANPI--DGKIIMSNLCS 377

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  +               CNLGSIN+L     +      + ++I T VR L  
Sbjct: 378 EILQVQTPSKLNDEQVYEELGADISCNLGSINILNLLETSN----DVVASIETMVRALTY 433

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           + D+ N   +   K  N     IGLG MG  +      + Y SPE++E+ D   E I++ 
Sbjct: 434 ITDVSNIKAVPTIKNGNDKAHTIGLGAMGLHAWFASNQVEYGSPESIEMTDALFELINYA 493

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRTSRL 744
            + AS ++A+ER   + +F+ S +  G +  + +  L        AEV D + +      
Sbjct: 494 TLVASNKIAKERDTTFYNFENSKYADGSYFDEYVPTLSQEISSKVAEVFDGVVLPNV--K 551

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVN 803
            W+ L+  +   G+ + N +A+AP  +IA +   + S+ P    +  + +  +G      
Sbjct: 552 DWETLRNSIIESGLYHQNRLAVAPNGSIAYVNETTSSLHPIISMIEERQDGKTGKTYYPA 611

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                                           R+ +     + +A++   + +I   +  
Sbjct: 612 P-------------------------------RLSEKTIPYYKSAYDTSMIDVINVYATA 640

Query: 864 QKWIDQAQSLNLYLDE---------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           QK IDQ  SL L++                  S + L  +   AW  G+KT YY+R+
Sbjct: 641 QKHIDQGMSLTLFMRSELPENLYPWKVEGGATSTRDLTLLRHYAWKKGIKTIYYVRT 697


>gi|297567588|ref|YP_003686559.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946]
 gi|297567763|ref|YP_003686734.1| NrdI protein [Meiothermus silvanus DSM 9946]
 gi|296852037|gb|ADH65051.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946]
 gi|296852212|gb|ADH65226.1| NrdI protein [Meiothermus silvanus DSM 9946]
          Length = 692

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 167/727 (22%), Positives = 292/727 (40%), Gaps = 72/727 (9%)

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM---QCLYPEYFCR 258
           L  +S  L  +   +     R  + +  REV       P      E    +  Y ++F R
Sbjct: 4   LELNSALLQRENGFFPLERDREAVREFAREVAAKRRLFPSVLKRLETLIEEGYYEDFFAR 63

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316
           Y  E ++          F+                 ++ +   Y  Y L     G  +E 
Sbjct: 64  YTPEFLQEIHELAFSYRFEFE--------------SFMAISKFYKDYALKTGDKGQYLED 109

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
                + VA+ LA      E +A  +   +    +  +TPT  N+G     +L SCFL  
Sbjct: 110 YPERVVAVALHLA---KGDEAQARAYVRAMMERRYQPATPTFLNAGRARRGELVSCFLLE 166

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           V D L  I   L     L+K  GG+  + + +R  G  I G  G ++GV+P +K+  D  
Sbjct: 167 VDDSLDSIGYNLNAAMQLSKIGGGVALNLSRLRARGEPIKGVEGAAKGVVPVMKLLEDAF 226

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +Q G+RKGA   YL  +H D+EE L+ +K   D++ R   +     +PD F +   +
Sbjct: 227 NYADQMGQRKGAGAVYLNIFHWDLEEVLETKKINADEKSRIQTLALGLVVPDKFFQLAAE 286

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              + +F+P  V     +   E +     YE   +  E+K  R + A  +  ++  + FE
Sbjct: 287 GKPFYVFAPYSVYRAFGVPLDEMD-LDTRYEELLEHPEVKK-RPLDAREILTRIARLQFE 344

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608
           +G+P++ ++   N  +P + +G +  SNLCTEI    +                 S NL 
Sbjct: 345 SGYPYLIYRSTANRANPLKGLGQIKMSNLCTEIFQIQTPSRVGPYGTPEVVGYDVSCNLG 404

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +    N  +   L  ++RTA   L  V D      +    ++N    AIGLG M     L
Sbjct: 405 SLNIVNVMEGRALRESVRTATDALTAVSDQSEVAQVPGVARANRELHAIGLGAMNLHGYL 464

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSI 726
               IPY S EA E A      ++++++  S+E+A+     +  F+GS +  G +    +
Sbjct: 465 AKNEIPYESAEAREFARAFFMAVNYYSLERSMEIARARGQTFVGFEGSDYASGAYFAKYL 524

Query: 727 GLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
                   E        M       W  L ++V+  G+ ++  +AIAPT +I+ +   + 
Sbjct: 525 ERDWRPTGESVKDLFAGMPLPGPKEWARLAEQVQEHGLYHAYRLAIAPTQSISYLQNATP 584

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P    +  ++  +        +L                                 +
Sbjct: 585 SVAPITDLIETRTYGNATTYYPVPYL-------------------------------SPE 613

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
               + +A+ +D   +I+  +  Q+ +DQ  S  L++D   S ++L  +Y  AW  GLK+
Sbjct: 614 TLWYYKSAYRMDMYRVIDLVAGIQEHVDQGVSTVLFVDSQTSTRELARLYIYAWQKGLKS 673

Query: 900 TYYLRSR 906
            YY R++
Sbjct: 674 LYYTRTK 680


>gi|312862712|ref|ZP_07722952.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           vestibularis F0396]
 gi|311101572|gb|EFQ59775.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           vestibularis F0396]
          Length = 719

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 161/716 (22%), Positives = 281/716 (39%), Gaps = 86/716 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  +     IE                +  L+ D+  ++
Sbjct: 32  KEALRAFFLENVKPNSMVFNSITDK-INYLIENDYIESEFIGKYEPAFIEKLSADIHTQK 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV           E  A +  N + 
Sbjct: 91  FRFQSFMAAYKFYQQYALKTNDGESYLESIED---RVLFNALYFADGDENLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   +      +      Y+
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGK-PYNYIDITAMYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I   + I+A  L  ++  +  E+G+P+I   D  N        G +  SNLC+
Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANR--YNPIDGKIVMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +          +I+   R L  
Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++ 
Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
            +  S  +A+E +  +  F+ S +  G +    +          + E+ +   + +    
Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRIKELFEGHFIPQA--K 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G      
Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYPA 616

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
           + L                       S   I          + +A+++D   +I+  +  
Sbjct: 617 NSL-----------------------STDTIPF--------YTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|262275642|ref|ZP_06053451.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Grimontia hollisae CIP 101886]
 gi|262219450|gb|EEY70766.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Grimontia hollisae CIP 101886]
          Length = 718

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 139/655 (21%), Positives = 263/655 (40%), Gaps = 62/655 (9%)

Query: 293 FEYLGLQILYDRYF--LHINGSRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSS 348
           ++   ++I   +Y        +  E     F RVA  LA   +E+ +EK   EF      
Sbjct: 20  YQATSMEIWDSKYRLKSKHGDAIDETLDDTFKRVARALADLEEESVREKWYNEFL-WALR 78

Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGND 403
              + +     N+G    +      +C ++ T+ D +  I G + E  +  K   G+G D
Sbjct: 79  HGAIPAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYD 138

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H DV EF+
Sbjct: 139 FSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVMEFI 198

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP----------DEVSDLHDL 513
             ++    +  R    N +  I + F++ V  +  W L  P           ++ +  ++
Sbjct: 199 RAKR----EDGRLRQFNLSLLITEEFIEAVKNDGEWQLIFPVTEKEARQDGTDLYNDDNI 254

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              ++       E    R   K++R + A  LW  +++  ++   P     D  N  +  
Sbjct: 255 VWADWPSKEGLLEDDQGRVACKIYRTMPARNLWNVIMSSTYDYAEPGFILIDKVNQMNNN 314

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL     +       FD++     +   
Sbjct: 315 WFCEDIRATNPCGEQPLPPY----GACLLGSVNLTKFVRDPFTENARFDWEMYRKVVAIF 370

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +EK ++   T R  G+G +G  S L +L   Y S  ++   ++  +
Sbjct: 371 TRMLDNVVEINQLPLEKQREEIQTKRRHGMGFLGLGSTLTMLRHKYGSAASIAFTEQISQ 430

Query: 689 FISFHAISASVELAQERGAYSSFKG----SLWDQGVFP---IDSIGLLAEVRDELAMNRT 741
            ++      +V+LA E+G     +     +       P    D I +  +V+ ++   + 
Sbjct: 431 EMAITGWEQAVKLAAEKGPAPVMEQEFEVTPKMMRQRPEMAKDGIKVGDKVKGKVLHAKY 490

Query: 742 SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          +L +++   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 491 SRYMQQIGEVRPDLIEKLVETGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRN 550

Query: 794 NMS---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            +         V+ F    L  R+L +   +      +          + L +   TA +
Sbjct: 551 VIKPGKKSKESVDVFSFELLAYRELINAKAMPYSTKEE----------EQLPEYFITADD 600

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           I P   +E  +  Q+WID + S    +  +   +    IY  A+  GLK     R
Sbjct: 601 ITPSQHVEVQAAAQRWIDSSISKTANVPTDFPFENFKDIYMDAYDKGLKGCTTFR 655


>gi|322372697|ref|ZP_08047233.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C150]
 gi|321277739|gb|EFX54808.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C150]
          Length = 719

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 161/716 (22%), Positives = 280/716 (39%), Gaps = 86/716 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +  K        +  E     IE                +  L+ ++  + 
Sbjct: 32  KEALHAFFLENVKPNSMAFNSI-TEKINYLIENDYIESEFIGKYEPAFIEKLSAEIYSQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV           E  A +  N + 
Sbjct: 91  FRFQSFMSAYKFYQQYALKTNDGQAYLESIED---RVLFNALYFADGDEHLASDLANEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   +      +      Y+
Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARKNEEMYLFSPYSVEKEYGK-PFNYIDITAMYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANRHNPI--DGKIVMSNLCS 383

Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI    +  E               CNLGS N+L    +          +I+   R L  
Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  +     +++ 
Sbjct: 439 VTDSSSIEAVPSIKNGNQQAHTFGLGAMGLHSYLAKNHIEYGSPESVEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
            +  S  +A+E +  +  F+ S +  G +    +          + E+ D   + +    
Sbjct: 499 TLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRVKELFDGHFIPQA--K 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W+EL++ VK  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G      
Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP- 615

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                                            +  D    + +A+++D   +I+  +  
Sbjct: 616 ------------------------------ANGLSTDTIPFYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|257870056|ref|ZP_05649709.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804220|gb|EEV33042.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 719

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 155/709 (21%), Positives = 278/709 (39%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +        +  +     IE                +  L   L  + 
Sbjct: 32  KEALAAFFKENVEPNTMTFDSVTDK-IDYLIEHDYLEEAFIRKYRPAFIEELYQFLSEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FTFKSFMAAYKFYSQYALKTNDGTAYLESYED---RVAFNALYFADGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G   + 
Sbjct: 148 YQRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNAIGRGINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    + Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGI-PFSYIDITKEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P+I   D  N        G +  SNLC+
Sbjct: 327 NLVMNPNIRKTK-IKARDLENEISKLQQESGYPYIINIDTANR--SNPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N  D      ++R   R L  V D  
Sbjct: 384 EILQVQEPSVINGKQEYEVLGTDISCNLGSTNIVNLMDSPDFGKSVRAMTRALTFVTDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  +      + Y SPE++E  D     +++  +  S
Sbjct: 444 DIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNYWTLVES 503

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +  D I    + + +        +   S   W  L +
Sbjct: 504 NNIAKERGEVFHNFEKSAYADGSYFTDYITGDYQPKSDKIKALFDGVFIPSGEDWAALAE 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            VK  G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N+ 
Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSNDT 623

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A+++D   +I+  +  QK +DQ 
Sbjct: 624 IG-------------------------------YYRSAYDMDMRKVIDVYATAQKHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            S+ L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSMTLFMRSDIPEGLYEWKETSKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|114797863|ref|YP_760266.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomonas neptunium ATCC 15444]
 gi|114738037|gb|ABI76162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomonas neptunium ATCC 15444]
          Length = 731

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 144/655 (21%), Positives = 247/655 (37%), Gaps = 86/655 (13%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHF 351
             L  +I   +Y    +        A   RVA  +A  E    ++     F + L+ F F
Sbjct: 5   TPLAAEIWEKKYRFRSDEGEDVDLAATLSRVANAVAKAENPANRKVWRARFRDALTDFRF 64

Query: 352 MCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           + +   L  +GT     L +CF+  T+PD+L GIF  L+E A+  +  GG+G D++ +R 
Sbjct: 65  IPAGRILAGAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIRP 124

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
            GA + G   ++ G + F+   +     +   G+R+GA+   L   H D+E F+D ++  
Sbjct: 125 SGAPVMGVGAQASGPLSFMDTWDAMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR-- 182

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             D  R  + N +  + D FM  +     WTL                            
Sbjct: 183 --DGARFRNFNLSVLVTDEFMAALEAGRDWTLSF-------------------------- 214

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                + +R + A  LW +++   ++   P + F D  N  +    +  + +SN C E  
Sbjct: 215 ---NGQPYRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGEQM 271

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-----AVRVLDNVIDINCHTIE 644
           L         C LGSINL    ++      K+  T        A+R LDNVIDI+ + +E
Sbjct: 272 LPPY----GACLLGSINLARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLE 327

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  +     R +GLG+ G   AL      Y S +AV +++  M  I   A  AS  LA E
Sbjct: 328 QQGEEARAKRRLGLGVTGLADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAE 387

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G Y  F                        +           + +  +   G+RN    
Sbjct: 388 KGPYPLFDK---------------------AILDRPNLLGLDPDTRALISEHGLRNGCLT 426

Query: 765 AIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +IAPT T + +   VS  ++P +   Y +     D T V               E  ++D
Sbjct: 427 SIAPTGTTSLLADNVSSGVEPVFAFSYSRKVRQADGTSV---------------EEPVTD 471

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
                    + +  P     +  +A  + P   +   +  Q+++D + S  +    + S 
Sbjct: 472 YALRVWHRLHGDAAPPA--DVFVSAQTLTPQDHLRMQASAQRFVDSSISKTVNCPADISF 529

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
                +YR+ + +G K     R  + T    S  +             P +    
Sbjct: 530 DAFKDVYREGYRLGCKGLTTYRPNAITGSVLSVAETPVQADVPETPLAPRARKLE 584


>gi|262184724|ref|ZP_06044145.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 731

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 162/750 (21%), Positives = 286/750 (38%), Gaps = 99/750 (13%)

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
                 N++D   +   +   I +++  +        V  R       ++ L  +     
Sbjct: 35  ALNAQLNLFDASGKIQFDKD-IQAAQDYVTHH-----VAPRMHQFDSTKQRLEWLVDN-- 86

Query: 242 KATHHEMQCLYPEYF--CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
           +    +   LY + F    Y             +  F                F    L+
Sbjct: 87  EYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFLGAF--------------KFFTSYALK 132

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
                 F       +E  +    RVA          E+ A +  + + +  F  +TPT  
Sbjct: 133 TFDGSRF-------LEGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQPATPTFL 182

Query: 360 NSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           N+G     ++ SCFL  + D+L  I  ++     L+K  GG+    + +R  GA I    
Sbjct: 183 NAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPIKKIE 242

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   
Sbjct: 243 NQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKT 302

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           ++    IPD+  +   +N    LFSP +++  + +   +     E Y+       I    
Sbjct: 303 LSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMS-ITEYYDELVANPRISHT- 360

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------- 590
            I A   +  +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI          
Sbjct: 361 TIKAREFFTTLAELQFESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYG 418

Query: 591 ----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEK 645
                ++  +   CNLGS+N+   F +          T+ TAVR L  V D+ N   +  
Sbjct: 419 ASGDYTTVGQDISCNLGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPS 473

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
               N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS  LA E+
Sbjct: 474 IAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEK 533

Query: 706 -GAYSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTI 756
              ++ F+ S +  G +    I                E  +    R  W  LK +V   
Sbjct: 534 GQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQVMQD 593

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDL 815
           G+ N+   A+ PT +I+ I   + SI P    + ++     G                  
Sbjct: 594 GIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP----------- 642

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                + +D  +    ++ +    +I++ +   + +DQ  SL L
Sbjct: 643 --------------------EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTL 682

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +   + + + ++     AW  G+KT YY+R
Sbjct: 683 FFTADTTTRDINKAQIYAWKAGIKTLYYIR 712


>gi|12045086|ref|NP_072897.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           genitalium G37]
 gi|255660232|ref|ZP_05405641.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           genitalium G37]
 gi|1350599|sp|P47473|RIR1_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha;
           AltName: Full=Ribonucleotide reductase
 gi|3844834|gb|AAC71452.1| ribonucleoside-diphosphate reductase, alpha chain [Mycoplasma
           genitalium G37]
 gi|166078758|gb|ABY79376.1| ribonucleoside-diphosphate reductase, alpha chain [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 721

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 168/759 (22%), Positives = 302/759 (39%), Gaps = 83/759 (10%)

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
           +E D+E+ + F+++  I  +           +++  +      +   ++           
Sbjct: 12  TEEDVESYISFNAQAKIYDDFAIDLQAVESYIQEHVKPKTKVFHSTKERLDF-------- 63

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
                 I+       +           + +     R     ++G    Y+ Y L     +
Sbjct: 64  -----LIKNDYYDEKIINMYSFEQFEEITHKAYSYRFRYANFMGAFKFYNAYALKTFDGK 118

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCF 372
             +      RV M + +       +A++    +    F  +TPT  N+   +  +  SC+
Sbjct: 119 YYLENYE-DRVVMNVLMLANGNFNKALKLLKQIILNRFQPATPTFLNAGRKKRGEFVSCY 177

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+     L+K  GG+    + +R  GA I     +S G+IP +K+  
Sbjct: 178 LLRIEDNMESIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKIENQSSGIIPIMKLLE 237

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G+R+GA   YL   H DV +FLD ++   D++ R   ++    IPD+  + 
Sbjct: 238 DSFSYSNQLGQRQGAGAVYLHCHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFQL 297

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
              N    LFSP    D++  YGK                  ++ +  ISA   ++ +  
Sbjct: 298 AKNNEMMALFSP---YDIYQEYGKALSDISVTEMYYELLENQRIKKTFISARKFFQTIAE 354

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AV 599
           + FE+G+P+I F D  N R    H   +  SNLC+EI   S   E               
Sbjct: 355 LHFESGYPYILFDDTVNRR--NAHKNRIVMSNLCSEIVQPSLPSEFYSDLTFKKVGSDIS 412

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGL 658
           CNLGS+N+     +      +LA  I+ A+  LD V  I+        KK N  + A+GL
Sbjct: 413 CNLGSLNIARAMESG----SELAELIQLAIESLDLVSRISSLETAPSIKKGNSENHALGL 468

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G M     L    I Y S EAV+  +     +++HA SAS +LA E G +  F+ + +  
Sbjct: 469 GAMNLHGFLATNAIYYDSKEAVDFTNIFFYTVAYHAFSASNKLALELGKFKDFENTKFAD 528

Query: 719 GVFPI-------DSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           G +         D        +  + D+  +   ++  W +L   ++  G+ NS+ MAIA
Sbjct: 529 GSYFDKYTKVASDFWTCKTEKVQALFDKYQVKIPTQENWKQLVASIQKDGLANSHLMAIA 588

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +I+ +   + S+ P    + V+         V ++                      
Sbjct: 589 PTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRIYVPAY---------------------- 626

Query: 828 DGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
                   ++ +D  +     A+E+    +I   +  Q+ +DQA SL L++ +  + + L
Sbjct: 627 --------KLDNDNYQYFKDGAYELGFEPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 678

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
           +  Y  A+  G  + YY+R R    V K +        +
Sbjct: 679 NKAYIYAFKKGCSSIYYVRVR--QDVLKDSEDHTIKIKD 715


>gi|73541801|ref|YP_296321.1| ribonucleotide reductase large subunit [Ralstonia eutropha JMP134]
 gi|72119214|gb|AAZ61477.1| Ribonucleotide reductase large subunit [Ralstonia eutropha JMP134]
          Length = 828

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 144/637 (22%), Positives = 245/637 (38%), Gaps = 76/637 (11%)

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379
           RVA  LA  E   ++E     F        F+ +      +GT     L +CF+  V D 
Sbjct: 40  RVARALAQAETEDQREGWTARFL-WAQESGFVPAGRINSAAGTGIQATLINCFVQPVGDS 98

Query: 380 -------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                     I+ A+ + A   +  GG+G D++ +R  GA +  T+ ++ G + F+KV +
Sbjct: 99  VSEPRGGRPSIYTAVAQAAETMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFD 158

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
            +   V   G R+GA    L   H D+E F+  +     D+    + N +  + D FM+ 
Sbjct: 159 ASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-----DKGDLSNFNISIGVTDEFMRA 213

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V ++    L    E        G     AY   + Q       V+R++ A  LW +++  
Sbjct: 214 VERDEEVELVHEAEPGADLIAGG-----AYRRDDGQ------WVYRRMPARLLWDQVMHA 262

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            ++   P I F    N  +   +   + ++N C E  L         C LGSI+L     
Sbjct: 263 TYDHAEPGILFLSRINADNNLYYCETIEATNPCAEQPLPPY----GCCCLGSIDLTRFVR 318

Query: 613 NNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   FD+D  A  +R + R+LDNV+D+    + + +      R +GLG +G  SAL
Sbjct: 319 QPFTPDSDFDFDAFAEVVRVSTRMLDNVLDVTFWPLPEQQAEAQAKRRVGLGFLGLGSAL 378

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
            +L + Y S  A  +A    E +   A  AS ELA E+GA+  F    +           
Sbjct: 379 VMLGLRYDSEPARVVAARIAERMRDEAYLASTELAAEKGAFPLFDADAY----------- 427

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785
                      +  +    + +++ +   G+RNS+ ++IAPT TI  A     S  I+P+
Sbjct: 428 ---------LQSGFASRLPEPVRQAIMRNGLRNSHLLSIAPTGTITLAFADNASNGIEPA 478

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           +   Y +              + +   R             H G   ++ ++PD      
Sbjct: 479 FSWTYQRKKR-----------MPDNTYRTYEVADHAWRRYRHTG--ADMNKLPDA----F 521

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            TA ++  +  +      Q +ID + S  + +  +   +    +Y +AW  GLK     R
Sbjct: 522 VTALQMSALDHMRMLQAVQPYIDTSISKTVNVPEDYPYEAFRNLYLEAWKAGLKGLATYR 581

Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             S      S         +     D          P
Sbjct: 582 PNSVLGAVLSVSVPAVAASSTATTVDDPLVRPYGSRP 618


>gi|297243044|ref|ZP_06926982.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD]
 gi|296889255|gb|EFH27989.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD]
          Length = 735

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 167/736 (22%), Positives = 286/736 (38%), Gaps = 82/736 (11%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-------PEYFCRYI 260
             I    +Y  + A   L    + +     ++ +K    +    +        E     I
Sbjct: 24  ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSDYVQEHSMKFASTRERLNYLI 83

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +       +     D  L       +        +LG    Y  Y L     +  +    
Sbjct: 84  DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGKQYLENFA 143

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379
               A+ L L +   EK A+ + + + +  F  +TPT  N G     +  SCFL  + D+
Sbjct: 144 QRAAAVALELAD-GDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 202

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    N
Sbjct: 203 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 262

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +    
Sbjct: 263 QLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 322

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558
            LFSP    D+   YGK F                ++ +K I A   +  +  + FE+G+
Sbjct: 323 ALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTLAEIQFESGY 379

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSIN 606
           P+I F+D  N  +P    G +  SNLC+EI               S       CNLGS+N
Sbjct: 380 PYILFEDTVNRTNPI--KGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLN 437

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +             L +++  AVR L +V +  +  ++   ++ N    AIGLG M    
Sbjct: 438 IAKAMDG------DLGASVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHG 491

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724
            L   H+ Y S EA++  D     +++HA  AS  LA ERG A++SFK S + +     +
Sbjct: 492 FLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFASFKTSAYAKPAGKGN 551

Query: 725 SIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
                               ++     +   S   W++L+  +   G+ N    A+ PT 
Sbjct: 552 YFDKYTDGSRSLEPRTQAVRDLFARFNVAIPSVSDWEQLRDEILRDGIYNEYLQAVPPTG 611

Query: 771 TIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + ++     G      +++ N+                    
Sbjct: 612 SISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM------------------ 653

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
                        +    A+EI    +I++ +   + +DQ  SL L+  +  + + L+  
Sbjct: 654 -------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKA 700

Query: 889 YRQAWLMGLKTTYYLR 904
              AW  G+KT YY+R
Sbjct: 701 QIYAWRKGIKTLYYIR 716


>gi|116493226|ref|YP_804961.1| ribonucleotide-diphosphate reductase subunit alpha [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103376|gb|ABJ68519.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Pediococcus pentosaceus ATCC 25745]
          Length = 721

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 164/717 (22%), Positives = 292/717 (40%), Gaps = 86/717 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           RE L    K+  +A   +   L   +     E+ ++A L+ E   DF +  L + LK + 
Sbjct: 32  REALAAFLKENVQANTMQFDSLRERFDYLLKEDYIEAALVEEYSFDF-IEKLYDFLKQQ- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y L  N +   + + F  RVAM         E+ A+   + +  
Sbjct: 90  DFHFQSFMAAYKFYAQYALKTNNNEYYL-ENFIDRVAMNALYFADGNEELAMNIADEIIH 148

Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+      +L SCFL    DD+  I   +     L+K  GG+G + T +
Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F   +  +    LFSP  V  ++      +    + Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYDLIKHDEDMYLFSPYSVEKVYGE-PYAYVDITKEYDN 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 IK F+ + A  +  ++  +  E+G+P+I   D  N  +P    G +  SNLC+E
Sbjct: 328 MVKNPAIKKFK-VKARNIENEISKLQQESGYPYIVNVDTANRENPIY--GKIVMSNLCSE 384

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGS N++               ++ T VR L  V
Sbjct: 385 IMQVQTPSVIDNKQNYTKLGTDISCNLGSTNIVNMMQTPH-----FGKSVETMVRALTFV 439

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +   +  N     IGLG MG    L   H+ Y   +++E        +++  
Sbjct: 440 TDHSDIDVVPSIQNGNALAHTIGLGAMGLHGYLAKNHLYYGEADSIEFTSVYFMLLNYWT 499

Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           + AS ++A+E+   + +F  S +  G +    +          + E+ + + +       
Sbjct: 500 LKASNQIAKEKNQVFHNFDKSKYADGSYFDKYVENDFGPKSNRVKELFNGIEIPSV--ED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W +LK  V   G+ + N MA+APT +I+ I   + S+ P    +  +     G       
Sbjct: 558 WKQLKADVMADGLYHQNRMAVAPTGSISYINDATASLQPIVNKIEERQEKKIGKIYFPAP 617

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L N+                                 K + +A++ID   +I+  +  Q
Sbjct: 618 YLSND-------------------------------TLKYYQSAYDIDMRKVIDIYAAAQ 646

Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  S+  ++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 647 QHVDQGMSMTFFMRSTIPAGIYDWKEGRTDKMTTRDLNILRNYAHHEGIKSIYYVRT 703


>gi|296123412|ref|YP_003631190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Planctomyces limnophilus DSM 3776]
 gi|296015752|gb|ADG68991.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Planctomyces limnophilus DSM 3776]
          Length = 1032

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 130/658 (19%), Positives = 231/658 (35%), Gaps = 75/658 (11%)

Query: 325 AMGLALKETEKEKRAVEFYNLLS------SFHFMCSTPTLFNSGTRH--PQLSSCFLTTV 376
            +             V  Y+         ++ F   T  +  + T +  PQ S+CF+ +V
Sbjct: 153 CLHQYGSFNSPVWFNVGLYHQYGVAGSKGNYRFDLKTQEVVRAETSYEFPQASACFIQSV 212

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I       AML K+  G G D + +R     + G  G   G + F++V +  A 
Sbjct: 213 DDNMEDIMRLATSEAMLFKFGSGTGTDLSSIRSAKEKLSG-GGTPSGPLSFMRVYDQIAA 271

Query: 437 AVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRR--------------------R 475
            V  GGK R+ A    L+ WH D+ EF+  +       R                     
Sbjct: 272 VVKSGGKTRRAAKMQSLKDWHPDILEFIQCKLKEEKKARVLIESGEYDSNFNGEAYGSIM 331

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
             + N +  + D FM+   +N  W      + +     Y    E  Y             
Sbjct: 332 YQNANLSVRLSDEFMRAYEENKKWVTHWVTDATKPGPAY----EARY------------- 374

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
                    + R+M    +  G P + F    N      + G +++SN C+E        
Sbjct: 375 ---------VMRQMAEGAWHCGDPGVQFDTIINRWHTCPNDGRINASNPCSEYMF----L 421

Query: 596 ETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           +   CNL S+NL      + +FD ++  S I   +   + ++D   +   +   ++H +R
Sbjct: 422 DDTACNLASLNLRKFQREDGRFDVERYRSAINIFLTAQEILVDHASYPTPQIAANSHKYR 481

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG     S L  + IPY S     I       ++  A   S  +A   G +  ++ +
Sbjct: 482 PLGLGYANLGSLLMSMGIPYDSAAGRGICGALTSLLTGQAYLTSSRIAAFAGPFEGYRNN 541

Query: 715 LWDQGVFPIDSIGLLA--EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                         +   +      + + +   WD++    +  G RNS    +APT TI
Sbjct: 542 ADPMLRVMRMHRDAVDRIDSSCPEELRKAAEEVWDDVVDSGRRFGFRNSQATVLAPTGTI 601

Query: 773 ANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK--YHD 828
           A +    +  I+P    + Y +    G   +VN  +   LK        +   +K     
Sbjct: 602 AFMMDCDTTGIEPDIALVKYKQLAGGGLMKIVNRTVPLALKTLGYDSPEVERIVKAIEEH 661

Query: 829 GSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
            +I     +  D   +   AF        I     I+  +  Q ++  A S  + +  + 
Sbjct: 662 DTIEAATDLSPDHLAVFDCAFKPASGTRSIQWRAHIKMMAAAQPFLSGAISKTVNMPADS 721

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
           + + ++  Y + W +GLK     R  S  S   +  KG DG     P         + 
Sbjct: 722 TVEDIEKAYAEGWRLGLKALAVYRDGSKQSQPLNVKKGGDGNKEVAPGQPVRRRLPTT 779


>gi|259046998|ref|ZP_05737399.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Granulicatella adiacens ATCC 49175]
 gi|259036317|gb|EEW37572.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Granulicatella adiacens ATCC 49175]
          Length = 719

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 156/693 (22%), Positives = 277/693 (39%), Gaps = 83/693 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING- 311
            E     IE                +  L  +   ++     ++     Y +Y +  N  
Sbjct: 52  DEKLDYLIEHDYLEAEFLGKYNRKFVKKLMKETYKKKFRFRSFMSAFKFYKQYAMKTNDG 111

Query: 312 -SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLS 369
              +E  +    R+           E+ A +    + +  +  +TPT  N+   R  +L 
Sbjct: 112 QRYLERFED---RIVFNALFLADGDEQLAHDLAEEMITQRYQPATPTFLNAGRKRRGELV 168

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL    DD+  I   +     L++  GG+G   + VR  G  I      S GV+P +K
Sbjct: 169 SCFLIQTTDDMNSIGRTINSALQLSRIGGGVGVSLSNVRAAGDPIKKIENASSGVVPIMK 228

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D+    NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F
Sbjct: 229 LLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKVRVKTLSLGLVVPDKF 288

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            + +  +    LFSP +V  ++ +    +    + Y+   +  EI+  + + A  L  ++
Sbjct: 289 YELIKNDDIMYLFSPYDVERIYGV-PFSYVDITKEYDNMVNNPEIRKSK-LRARDLENEI 346

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------------TLNSSSEET 597
             +  E+G+P++   D  N        G +  SNLC+EI                     
Sbjct: 347 SKLQQESGYPYVVNIDTANR--VNPIDGKIIMSNLCSEILQVQEPSVINNAQEYEHLGTD 404

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS N++    +  FD      ++  AVR L  V D  +   +   K  N     I
Sbjct: 405 ISCNLGSTNIVNLMKSPDFD-----RSVDVAVRALTFVTDHSSIDAVPTVKNGNSKAHTI 459

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715
           GLG MG  +   L  + Y SPE++E  D     ++F+ + AS ++A+ER  ++  F+ S 
Sbjct: 460 GLGAMGLHTFFALNQMEYGSPESIEATDLYFRMLNFYTLKASNKIAKERGKSFEGFERSK 519

Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
           +  G +    I            +    +   +   W +LK+ V + G+ + N +AIAPT
Sbjct: 520 YATGEYFDSYIAEEVQIQSDKVKKIFAKLPIPTVEDWKQLKEEVMSGGLYHQNRLAIAPT 579

Query: 770 ATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ +   S S+ P  + +  +    +G       FL N+                   
Sbjct: 580 GSISYVNETSASLHPITRLIEERQEKKTGKTYYPAPFLSND------------------- 620

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------- 877
                           + +A++ID   +I+  +  QK IDQ  SL L++           
Sbjct: 621 ------------TLPFYKSAYDIDMRKVIDVYAAAQKHIDQGMSLTLFMRSELPEGLYEW 668

Query: 878 -----DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                ++ + + L+ +   AW  G+K+ YY+R+
Sbjct: 669 KEGRTNKMTTRDLNILRNYAWNKGIKSIYYVRT 701


>gi|227833717|ref|YP_002835424.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454733|gb|ACP33486.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 744

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 162/750 (21%), Positives = 286/750 (38%), Gaps = 99/750 (13%)

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241
                 N++D   +   +   I +++  +        V  R       ++ L  +     
Sbjct: 48  ALNAQLNLFDASGKIQFDKD-IQAAQDYVTHH-----VAPRMHQFDSTKQRLEWLVDN-- 99

Query: 242 KATHHEMQCLYPEYF--CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
           +    +   LY + F    Y             +  F                F    L+
Sbjct: 100 EYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFLGAF--------------KFFTSYALK 145

Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
                 F       +E  +    RVA          E+ A +  + + +  F  +TPT  
Sbjct: 146 TFDGSRF-------LEGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQPATPTFL 195

Query: 360 NSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           N+G     ++ SCFL  + D+L  I  ++     L+K  GG+    + +R  GA I    
Sbjct: 196 NAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPIKKIE 255

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            ++ GV+P +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   
Sbjct: 256 NQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKT 315

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           ++    IPD+  +   +N    LFSP +++  + +   +     E Y+       I    
Sbjct: 316 LSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMS-ITEYYDELVANPRISHT- 373

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------- 590
            I A   +  +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI          
Sbjct: 374 TIKAREFFTTLAELQFESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYG 431

Query: 591 ----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEK 645
                ++  +   CNLGS+N+   F +          T+ TAVR L  V D+ N   +  
Sbjct: 432 ASGDYTTVGQDISCNLGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPS 486

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
               N +  AIGLG M     L    IPY   EA++  +     +++HA+ AS  LA E+
Sbjct: 487 IAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEK 546

Query: 706 -GAYSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTI 756
              ++ F+ S +  G +    I                E  +    R  W  LK +V   
Sbjct: 547 GQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQVMQD 606

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDL 815
           G+ N+   A+ PT +I+ I   + SI P    + ++     G                  
Sbjct: 607 GIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP----------- 655

Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
                                + +D  +    ++ +    +I++ +   + +DQ  SL L
Sbjct: 656 --------------------EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTL 695

Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +   + + + ++     AW  G+KT YY+R
Sbjct: 696 FFTADTTTRDINKAQIYAWKAGIKTLYYIR 725


>gi|319938785|ref|ZP_08013149.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
 gi|319811835|gb|EFW08101.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
          Length = 719

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 160/715 (22%), Positives = 291/715 (40%), Gaps = 84/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +   +  +      E  ++   +     ++ +  LA  + +++
Sbjct: 32  KEALEAFFKENVEPNTKKFSSITEKIHYLIQENYLEKEFIQLYSPEY-IEELATFI-HDQ 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  +   + +    +    E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSIEREYGV-PFAYIDITEKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+E
Sbjct: 328 LVANPKINKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSE 384

Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I     S                 CNLGS N++    +          +IRT  R L  V
Sbjct: 385 ILQVQESSLLNDAQEFLRLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y S E+VE        +++  
Sbjct: 440 TDSSHIKAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIAYGSAESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPTAA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPQGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|197122652|ref|YP_002134603.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           sp. K]
 gi|196172501|gb|ACG73474.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. K]
          Length = 925

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 127/651 (19%), Positives = 236/651 (36%), Gaps = 71/651 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E  +L+       ++P  FN     HPQ S+CF+  V D +  I  
Sbjct: 116 GYFATEGDAVAFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     + G  G++ G + F++  +  A  +  GGK R
Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNTAN 483
           + A    L+  H DV EF++ + +                        D     + N + 
Sbjct: 235 RAAKMVILDVDHPDVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D FM+ V ++  W                           +   R + +    I A 
Sbjct: 295 RVTDAFMRAVLEDREW---------------------------KLTARTDGQALETIRAR 327

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L R++    +  G P + F    N   P  +   +++SN C+E        + + CNL 
Sbjct: 328 DLMRQITEAAWLCGDPGMQFDTTINAWHPCPNTDRINASNPCSEYMF----LDDSACNLA 383

Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NL+   +    FD +     +   +   + ++    +      K++  +R +GLG   
Sbjct: 384 SLNLMHFRSIEGGFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYAN 443

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG--- 719
             + L    +PY S      A      ++  A + S  +A   G ++ ++ +        
Sbjct: 444 LGALLMASGLPYDSDGGRACAAAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGVI 503

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
                 + L+     E  +   +R  W +  ++    G RN     +APT TI  +    
Sbjct: 504 RKHAQHVDLVDPTLVEPGLLAAARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCD 563

Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIE 835
           +  I+P    + Y K    G   +VN+ +   L++     E + S L++ D   +I    
Sbjct: 564 TTGIEPDIALVKYKKLVGGGMLKIVNNTVPLALQRLGYSSEEITSVLQFIDEVETIEGAP 623

Query: 836 RIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
            +  +   +   AF        I  M  I      Q ++  A S  + +    + + ++ 
Sbjct: 624 GLRPEHAAVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            Y ++W +GLK     R     S   +T K  + K +AV            
Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEEKKDAVEPRLARRRLPDE 734


>gi|315641367|ref|ZP_07896442.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           italicus DSM 15952]
 gi|315482860|gb|EFU73381.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           italicus DSM 15952]
          Length = 719

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 158/708 (22%), Positives = 285/708 (40%), Gaps = 72/708 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+           ++ +      EE ++   L++   +F +  L   L  +  
Sbjct: 33  EALAAFLKENVAPNTKTFASIHDKIAYLVEEEYLEEEFLNKYQPEF-IEQLYAFLAEQSF 91

Query: 291 FAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++     Y +Y L  N     +E  +    RVA          E+ A+   + +  
Sbjct: 92  VFHSFMAAYKFYSQYALKTNNGEEYLESYED---RVAFNALYFANGDEELALALADEMIH 148

Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+   R  +L SCFL  + DD+  I   +     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNSIGRGINSALQLSRIGGGVGITLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G+ I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGSPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIMTFLSAKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+ 
Sbjct: 269 ENADEKIRVKTLSLGVLVPDKFYELTRKNEEMYLFSPYSVEREYGV-PFSYIDITEKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I+  + I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+E
Sbjct: 328 LVTNPRIRKTK-IKARDLENELSKLQQESGYPYIINIDTANRANPVN--GKIIMSNLCSE 384

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N+  E   +    S NL +    N         ++RT  R L  V D  +
Sbjct: 385 ILQVQEPSLINAKQEYDVLGTDISCNLGSTNIVNLMSSPDFGKSVRTMTRALTFVTDASD 444

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  NH +  IGLG MG  +      + Y SPE++E  D     +++  +  S 
Sbjct: 445 IDVVPSIQNGNHLNHTIGLGAMGLHTYFAKNQMEYGSPESIEFTDIYFTLLNYWTLVESN 504

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKR 752
            +A+ER   + +F+ S +  G +    I    + +          +   +   W  L   
Sbjct: 505 TIAKERQLVFHNFEKSSYADGSYFDKYIQGNHQPKSAKVKELFAGVFIPTSDDWQVLADN 564

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811
           VK  G+ + N +A+AP  +I+ I   S S+ P  + +  +     G      ++L NE  
Sbjct: 565 VKRDGLYHQNRLAVAPNGSISYINDTSASLHPITRLIEERQEKKIGKIYYPAAYLSNETI 624

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                            + +A+++D   +I+  +  Q+ IDQ  
Sbjct: 625 G-------------------------------YYKSAYDMDMRKVIDVYATAQQHIDQGM 653

Query: 872 SLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           S+ L+L               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 654 SMTLFLRSDMPEGLYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|325973167|ref|YP_004250231.1| ribonucleoside-diphosphate reductase, subunit alpha [Mycoplasma
           suis str. Illinois]
 gi|323651769|gb|ADX97851.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           suis str. Illinois]
          Length = 662

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 162/672 (24%), Positives = 304/672 (45%), Gaps = 55/672 (8%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--G 311
           E     ++E      L E   +  +  LA  +         Y+ +   ++ + L  N   
Sbjct: 15  ERIKWLVQEDYYFPSLLEKYTEEQINQLAEKVYSYSHTWKSYISISKFFESFALKSNCGN 74

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
             +E  +   + V++ L        K A E  +L++   +  +TPT  NSG +   +L S
Sbjct: 75  FILESYEDRVIVVSLFLG---DGNFKLANEIADLITRQVYQPATPTFSNSGKKRSGELVS 131

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL    D +  I   +  +  L+K  GG+  + + +RG GA I   +  + GV+P LK+
Sbjct: 132 CFLLETEDSINSINYIIATSMQLSKIGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKI 191

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             +     +Q G R+G+  AYL  +H D+ +F+D +K   D++ R   ++    IPD F+
Sbjct: 192 LENVFDYADQLGMRRGSGVAYLNIFHFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFL 251

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           +  T+N  + +F P+ +   + +   +     E Y++ A   +I + +++SA  +  ++ 
Sbjct: 252 QLATENKNFFIFEPNTIYQKYKVLLSDLN-MNEWYDKLAADKDI-LKKELSARNVLTRIA 309

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLG 603
            + FE+G+P++ + D  N + P + +G +  SNLCTEI             +E  +    
Sbjct: 310 QIQFESGYPYVIYIDNANKQHPLRGLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDV 369

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    N  +   L   I  ++R L  V D+         +K+N + R++GLG++ 
Sbjct: 370 SCNLASLNLVNLLEEKDLEKVIDISMRALTAVSDLTSIKNAPSIRKANESFRSVGLGVLN 429

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVF 721
           F   L   ++ Y  PE +E AD     I+++++ AS  +A+E    + +F+ S +  G +
Sbjct: 430 FTGVLLKNNLAYDDPEVLEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANGSY 489

Query: 722 PIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
               +    E + E        +   S   W +LK++V+  G+ N+  +AIAPT +I+ +
Sbjct: 490 FDQYLNNSFEPKSEKVKELLKNIKVPSPEDWAKLKEKVQRDGLYNAYRLAIAPTQSISYL 549

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              + SI P   ++  +   +        FL  E +                        
Sbjct: 550 QSATASIQPIISSIETRLYGNSMTYFPMPFLTKENEH----------------------- 586

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
                   ++ +A++ID   LI+ ++  QK IDQ  S  LY+ +  + + L  +Y  A  
Sbjct: 587 --------LYKSAYQIDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYAHH 638

Query: 895 MGLKTTYYLRSR 906
            GLK+ YY+R++
Sbjct: 639 KGLKSLYYVRTK 650


>gi|108760764|ref|YP_631136.1| vitamin B12-dependent ribonucleotide reductase [Myxococcus xanthus
           DK 1622]
 gi|108464644|gb|ABF89829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Myxococcus xanthus DK 1622]
          Length = 930

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 131/655 (20%), Positives = 239/655 (36%), Gaps = 70/655 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G   ++ ++E    E  +LL       ++P  FN G    PQ S+CF+ +V D++  I  
Sbjct: 120 GYFTRDADREAFHAELTHLLLRQKASFNSPVWFNVGVEAQPQCSACFINSVEDNMDSILT 179

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
             +   ML KY  G G++ + +RG    + G  G + G + F++  +  A  +  GGK R
Sbjct: 180 LARTEGMLFKYGSGTGSNLSTIRGSKELLAG-GGTASGPVSFMRGFDAFAGVIKSGGKTR 238

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L   H D+ EF+  + +                            + N +  +
Sbjct: 239 RAAKMVILNAEHPDILEFIRCKSSEEKKAWALIEAGYDPSFNGEAYSSVFFQNSNNSVRV 298

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FMK V  +A WT  S  +                            +      A  L
Sbjct: 299 TDAFMKAVVDDATWTTRSVRD---------------------------GQPLDTYQAREL 331

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +R++       G P + F    N          +++SN C+E        + + CNL S+
Sbjct: 332 FREISEAAHLCGDPGMQFDTTVNSWHTCSTTARINASNPCSEYMF----LDDSACNLASL 387

Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+     +  FD       +   +   + ++  + +  E+ +K++H +R +GLG     
Sbjct: 388 NLMHFRTIDGDFDVTAFRHAVDILLMAQEIIVGNSRYPTERIEKNSHDYRPLGLGYANLG 447

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPI 723
           + L    +PY SP     A      +   A + S  LA+++G ++ +  +     GV   
Sbjct: 448 ALLMASGLPYDSPAGRNYAGAITSLMCGEAYAMSARLAEKQGPFAGYAKNAEPMLGVIRK 507

Query: 724 DSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780
                     + ++  +    +  WD      +  G RNS    +APT TI  +    + 
Sbjct: 508 HRKAAYHIAPEGVSQGLFAAQKDAWDRALALGEEHGFRNSQVTVLAPTGTIGFMMDCDTT 567

Query: 781 SIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERI 837
            I+P    + Y K    G   +VN  +   L++           + Y D   +I     +
Sbjct: 568 GIEPDIALIKYKKLVGGGMLKIVNQTVPLALEKLGYPQTQSQDIISYLDKQDTIEGAPHL 627

Query: 838 PDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
             +   +   AF        I  M  I+     Q ++  A S  + +  + + + ++  Y
Sbjct: 628 KPEHLPVFDCAFKPAQGERSIHWMGHIQMMEACQPFLSGAISKTVNMPSDATVEDIEKAY 687

Query: 890 RQAWLMGLKTTYYLRSRS-ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  GLK     R     T    ++ + V     A     P  +      P +
Sbjct: 688 MEAWKRGLKAIAVYRDGCKRTQPLNTSKETVKDTRAAKATVAPEPAPAVQPEPRA 742


>gi|184154756|ref|YP_001843096.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           fermentum IFO 3956]
 gi|260663215|ref|ZP_05864107.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226100|dbj|BAG26616.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552407|gb|EEX25458.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 723

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 163/713 (22%), Positives = 286/713 (40%), Gaps = 72/713 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
            L +E L    K+  +    +   +  E     IE                L  L   LK
Sbjct: 31  NLDQEALDDFIKENVEPNTKKFSSV-MERLNWLIENDYLEEDFIRQYTPAFLDRLYQYLK 89

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            E+DF F  ++     Y +Y +  N     +      RVAM         E+ A++  + 
Sbjct: 90  -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYLENY-IDRVAMNALYLANGDEQLAMDLADE 147

Query: 346 LSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L    +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + 
Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINL 207

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL 
Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + V ++A   LFSP +V  ++      +    + 
Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGK-PFSYVDITKE 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      EI   +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 327 YDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPI--EGTIVMSNL 383

Query: 585 CTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           C+EI         N       +    S NL +    N  +   L  ++R  +R L ++ D
Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIANLMETPDLGRSVRAMMRGLTHISD 443

Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                 +   K  N    ++GLG MG    L   HI Y SP A+E        +++  + 
Sbjct: 444 AESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLNYWTLV 503

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDEL 749
           AS E+AQE+   +++F+ S +  G +    +      +              +   W EL
Sbjct: 504 ASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPDDWQEL 563

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           K+RV+  G+ N+  +A+AP  + + I   + S+ P    +  +   M G       +L N
Sbjct: 564 KQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQEKMIGKVYYPAPYLSN 623

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                   + +A++ D   +I++ +  Q+ +D
Sbjct: 624 D-------------------------------TMPYYRSAYDTDMRSVIDTYAAAQEHVD 652

Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ S+ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 653 QSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|41387637|gb|AAS01681.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2]
          Length = 822

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 162/698 (23%), Positives = 285/698 (40%), Gaps = 67/698 (9%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E V     + + ++ D++     +            L+  Y+ Y + +   + E    FF
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201

Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +R+A   A + + K+                   F+  L++  F+ STP +   G     
Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261

Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +SC+L      +    +    ++        GG+G     + G             G++
Sbjct: 262 TASCYLMDPRTNNTQDALKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484
             +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A W
Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370

Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             DL  KR  ++                S L  L+ +EFE  YE  E      E      
Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598
           I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + +    
Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485

Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           VC+L SINL     N     QFD+D L   +R A   ++ +++ +    EK+      +R
Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           ++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ F  
Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA  A
Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829
            +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+  + 
Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716

Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882
           +I        +   +  + TAF+ D   LI+  S R  ++DQ+QS+ L++ E +      
Sbjct: 717 NIQTALGNKPECHSLLKYKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLA 776

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
            ++  +   A+  GLKT  YY + R AT+       G 
Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNAGVFCGDGE 814


>gi|227552560|ref|ZP_03982609.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257888212|ref|ZP_05667865.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257896900|ref|ZP_05676553.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|293378469|ref|ZP_06624632.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium PC4.1]
 gi|227178309|gb|EEI59281.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257824266|gb|EEV51198.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257833465|gb|EEV59886.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|292642798|gb|EFF60945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium PC4.1]
          Length = 719

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 152/709 (21%), Positives = 285/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALAAFFEENVKPNTMTFPSIMEKINYLIEQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R      I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 RLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNTLKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|116333245|ref|YP_794772.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           brevis ATCC 367]
 gi|116098592|gb|ABJ63741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus brevis ATCC 367]
          Length = 721

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 163/714 (22%), Positives = 282/714 (39%), Gaps = 82/714 (11%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+           L  E F   I E      +  +     +  L + LK + D
Sbjct: 33  EALQAFLKENVIPNTKTFASL-KERFDFLIAENYIEEAVVTAYPFSFIEDLYDYLKAQ-D 90

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  + +   + + F  RVAM         ++ A +  + +   
Sbjct: 91  FHFKSFMAAYKFYAQYALKTDDNEFYL-ENFIDRVAMNALDFGGGDQRLAHDLADEIIHQ 149

Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+  +R  +L SCFL    DD+  I   +     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRSRRGELVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G G  I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 GAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIVAFLSAKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +    +A   LFSP +V  ++       +I  E     
Sbjct: 270 NADEKIRLKTLSLGITVPDKFYELCAADADMYLFSPYDVERIYGKPFSYVDITAEYDNLV 329

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           A+    K  +K+ A  L   +  +  E+G+P+I   D  N        G +  SNLC+EI
Sbjct: 330 ANPDIHK--KKMKARDLETDIGKLQQESGYPYIVNIDTANR--ENPIDGRIVMSNLCSEI 385

Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNLGS N++   ++          ++ T VR L  V 
Sbjct: 386 MQVQTPSTVNNKQEYVKLGTDISCNLGSTNIVNLMSSP-----DFGHSVETMVRALTYVT 440

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  +   +   +K N     IGLG MG  S     H+ Y S +++         +++  +
Sbjct: 441 DHSDIDVVPSIQKGNQLGHTIGLGAMGLHSYFAKNHMMYGSKDSIAFTSVYFMLLNYWTL 500

Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWDE 748
            AS E+A+E    + +F  S +  G +       D     A+V++    +   +   W E
Sbjct: 501 KASNEIAKERHETFHNFDKSAYADGRYFDRYTETDWRPTSAKVQELFANVWLPAPEDWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           LK  V   G+ + N MA+AP  +I+ I   + S+ P    +  +     G       +L 
Sbjct: 561 LKTAVMQDGLYHQNRMAVAPNGSISYINDTTASLHPIINRIEERQEKKIGKIYYPAPYLS 620

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                   + +A++ D   +I+  +  QK +
Sbjct: 621 ND-------------------------------TMPYYKSAYDTDMRRVIDVYAAAQKHV 649

Query: 868 DQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++                   + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGMSLTLFMRSTIPVGLYEWKDGRTDKMTTRDLSILRNYAFRKGIKSLYYVRT 703


>gi|291326471|ref|ZP_06124645.2| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
 gi|291314338|gb|EFE54791.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia
           rettgeri DSM 1131]
          Length = 710

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 180/739 (24%), Positives = 300/739 (40%), Gaps = 83/739 (11%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            SD++   + +   L + E        R   +K  +E     +++           L  E
Sbjct: 7   ISDVDYHALNAMLNLYDNE-------GRIQFDK-DKEAAHHYFRQHVNQNTVFFHDL-KE 57

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313
                ++E      + E      +  L       +     +LG    Y  Y L   +G R
Sbjct: 58  KLDFLVQENYYENSVLEQYDFEFIKALFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKR 117

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +     VA+ LA      E  A  + + + +  F  +TPT  N G +   +L SC
Sbjct: 118 YLERYEDRVCMVALTLAQG---SESLAKLYVDEIITGRFQPATPTFLNCGKKQRGELISC 174

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+ 
Sbjct: 175 FLLRIEDNMESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKML 234

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 235 EDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 294

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE--NYERQADRGEIKVFRKISAVALWRKM 549
               N    LFSP    D+  +YG           Y    +   IK ++ I+A   ++ +
Sbjct: 295 LAKDNQDMYLFSP---YDIERIYGVPMSEISVTDKYHEMVNNKAIKKYK-INAREFFQTL 350

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +P    G ++ SNLC+EI                   + 
Sbjct: 351 AEIQFESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNRPSVYEDDLSYQQIGKD 408

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656
             CNLGS+N+         D    A +I  AVR L  V D+ +  ++    + N    AI
Sbjct: 409 ISCNLGSMNIAKT-----MDSPDFAQSIAAAVRALSAVSDMSDIRSVPSIAEGNRQSHAI 463

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L   HI Y S EA++  +     ++++A+  S +LA ER   +  F+ S 
Sbjct: 464 GLGQMNLHGYLAREHIYYGSEEALDFTNIYFYAVTYYALKTSNQLAIERKTAFVGFEHST 523

Query: 716 WDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  G +    I  +         E+     +   +R  W  LK+ V T G+ N N  AI 
Sbjct: 524 YASGDYFDKYINNIWLPKTQTVQELFRRSGIEIPTREDWQALKQSVITYGIYNQNLQAIP 583

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           PT +I+ I   + SI P    + ++     G       F+ N                  
Sbjct: 584 PTGSISYINNSTSSIHPIVSRIEIRKEGKIGRVYYPAPFMTN------------------ 625

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885
                        +  + +  A++I P  +I++ +   + +DQ  SL L+  D+ + + +
Sbjct: 626 -------------ENLEYYQDAYQIGPEKIIDTYAMATQHVDQGLSLTLFFKDDATTRDI 672

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +     AW  G+KT YY+R
Sbjct: 673 NRAQIYAWRKGIKTLYYIR 691


>gi|312869728|ref|ZP_07729875.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           oris PB013-T2-3]
 gi|311094777|gb|EFQ53074.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           oris PB013-T2-3]
          Length = 723

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 158/709 (22%), Positives = 288/709 (40%), Gaps = 72/709 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +  +    +   L    F    +         +      L  L + LK + D
Sbjct: 35  EALADFIAQNVRPNTKQFASLTDR-FQWLEDNDYIEEGFVDKYSPAFLTKLYDYLKAQ-D 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  +     +      RVAM         E+ A++  + +   
Sbjct: 93  FHFHSFMAAYKFYAQYALRTDDKEYYLENY-IDRVAMNALYLADGDEELAMDLADEIIHQ 151

Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + + +R
Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 212 EAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V ++A   LFSP +V  ++      +    + Y+  
Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEKDADMYLFSPYDVERIYGK-PFSYVDITKEYDNL 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               EI+  +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI
Sbjct: 331 VANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRANPI--DGKIVMSNLCSEI 387

Query: 589 TLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC- 640
                            +    S NL +    N  D      ++R  +R L ++ D+   
Sbjct: 388 AQVQVPSKVADDQSYETLGTDISCNLGSTNIANMMDSPDFGRSVRAMMRGLTHISDVENL 447

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   K+ N    ++GLG MG  S L   HI Y SP A+E        +++ ++ AS E
Sbjct: 448 TVVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIEFTGVYFMLLNYWSLVASNE 507

Query: 701 LAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRV 753
           +A+E +  + +F  S +  G +           + ++  +            W  LK++V
Sbjct: 508 IAKERQETFHNFDKSSYADGSYFDKYTTKDWGPQSDVVKDLFHGIFIPGPADWAALKEKV 567

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812
              G+ N   +A+AP  + + I   + S+ P    +  +   M G       +L N+   
Sbjct: 568 MQDGLYNEYRLAVAPNGSTSYINDSTASLTPIINRVEERQEKMIGKIYYPAPYLSND--- 624

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                                           + +A++ID   +I++ +  Q+ +DQ+ S
Sbjct: 625 ----------------------------TMPYYRSAYDIDMRKVIDTYAAAQQHVDQSMS 656

Query: 873 LNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                ++ + + L+ +   A+  G+K+ YY+R+
Sbjct: 657 LTLFMRSTIPEGLYEWKNGRTNKMTTRDLNILRHYAYQKGIKSIYYIRT 705


>gi|315223182|ref|ZP_07865043.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           anginosus F0211]
 gi|315187614|gb|EFU21368.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           anginosus F0211]
          Length = 719

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 163/722 (22%), Positives = 289/722 (40%), Gaps = 85/722 (11%)

Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
            LL K  +E L   +K+  +    +   +  +      E  ++   +     ++ +  LA
Sbjct: 26  ILLHK-DKEALEAFFKENVEPNTKKFSSITKKIHYLIQENYLEKEFIQLYSPEY-IEELA 83

Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           + + +E+DF F  ++     Y++Y L  N     + ++   RV           E  A +
Sbjct: 84  SFI-HEQDFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKD 141

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             N +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+
Sbjct: 142 IANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGV 201

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+ 
Sbjct: 202 GISLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDII 261

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FL  +K   D++ R   ++    IPD F +   +N    LFSP  +   + +    +  
Sbjct: 262 AFLSTKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSIEREYGV-PFAYID 320

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E Y       +I   + I A  L  ++  +  E+G+P++   D  N  +P    G + 
Sbjct: 321 ITEKYNELVANPKISKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKII 377

Query: 581 SSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
            SNLC+EI                       CNLGS N++    +          +IRT 
Sbjct: 378 MSNLCSEILQVQEPSLLNDAQEFVRLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTM 432

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            R L  V D  +   +      N      GLG MG  S L    I Y S E+VE      
Sbjct: 433 TRALTFVTDSSHIKAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYF 492

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAM 738
             +++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +
Sbjct: 493 MLMNYWTLVESNNIARERGMTFHNFEKSDYANGTYFDKYLTGEFVPQSDRVKELFTGIFI 552

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSG 797
                  W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G
Sbjct: 553 PSA--EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIG 610

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                                                  +  +    + +A+++D   +I
Sbjct: 611 KIYYP-------------------------------AAGLSTETIPYYTSAYDMDMRKVI 639

Query: 858 ESASRRQKWIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYL 903
           +  +   + +DQ  SL L++                 + + L  +   A+  G+K+ YY+
Sbjct: 640 DVYAAATEHVDQGLSLTLFMRSDIPQGLYEWKTECKQTTRDLSILRNYAFNKGIKSIYYV 699

Query: 904 RS 905
           R+
Sbjct: 700 RT 701


>gi|299782856|gb|ADJ40854.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 723

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 163/713 (22%), Positives = 286/713 (40%), Gaps = 72/713 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
            L +E L    K+  +    +   +  E     IE                L  L   LK
Sbjct: 31  NLDQEALDDFIKENVEPNTKKFSSV-MERLNWLIENDYLEEDFIRQYTPAFLDRLYQYLK 89

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            E+DF F  ++     Y +Y +  N     +      RVAM         E+ A++  + 
Sbjct: 90  -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYLENY-IDRVAMNALYLANGDEQLAMDLADE 147

Query: 346 LSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L    +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + 
Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINL 207

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL 
Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + V ++A   LFSP +V  ++      +    + 
Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGK-PFSYVDITKE 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      EI   +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 327 YDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPI--EGTIVMSNL 383

Query: 585 CTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           C+EI         N       +    S NL +    N  +   L  ++R  +R L ++ D
Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIANLMETPDLGRSVRAMMRGLTHISD 443

Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                 +   K  N    ++GLG MG    L   HI Y SP A+E        +++  + 
Sbjct: 444 AESLTVVPSIKHGNDLSHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLNYWTLV 503

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDEL 749
           AS E+AQE+   +++F+ S +  G +    +      +              +   W EL
Sbjct: 504 ASNEIAQEKGEKFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPDDWQEL 563

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           K+RV+  G+ N+  +A+AP  + + I   + S+ P    +  +   M G       +L N
Sbjct: 564 KQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQEKMIGKVYYPAPYLSN 623

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                   + +A++ D   +I++ +  Q+ +D
Sbjct: 624 D-------------------------------TMPYYRSAYDTDMRSVIDTYAAAQEHVD 652

Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ S+ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 653 QSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|227514023|ref|ZP_03944072.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227087609|gb|EEI22921.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
          Length = 723

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 163/713 (22%), Positives = 286/713 (40%), Gaps = 72/713 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
            L +E L    K+  +    +   +  E     IE                L  L   LK
Sbjct: 31  NLDQEALDDFIKENVEPNTKKFSSV-MERLNWLIENDYLEEDFIRQYTPAFLDRLYQYLK 89

Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
            E+DF F  ++     Y +Y +  N     +      RVAM         E+ A++  + 
Sbjct: 90  -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYLENY-IDRVAMNALYLANGDEQLAMDLADE 147

Query: 346 LSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L    +  +TPT  N    R  +  SCF     DD+  I   +     L+K  GG+G + 
Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGQTINSALQLSKIGGGVGINL 207

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R  GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ +FL 
Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F + V ++A   LFSP +V  ++      +    + 
Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGK-PFSYVDITKE 326

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      EI   +K++A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 327 YDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPI--EGTIVMSNL 383

Query: 585 CTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           C+EI         N       +    S NL +    N  +   L  ++R  +R L ++ D
Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIANLMETPDLGRSVRAMMRGLTHISD 443

Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                 +   K  N    ++GLG MG    L   HI Y SP A+E        +++  + 
Sbjct: 444 AESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLNYWTLV 503

Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDEL 749
           AS E+AQE+   +++F+ S +  G +    +      +              +   W EL
Sbjct: 504 ASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPDDWQEL 563

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           K+RV+  G+ N+  +A+AP  + + I   + S+ P    +  +   M G       +L N
Sbjct: 564 KQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQEKMIGKVYYPAPYLSN 623

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                   + +A++ D   +I++ +  Q+ +D
Sbjct: 624 D-------------------------------TMPYYRSAYDTDMRSVIDTYAAAQEHVD 652

Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           Q+ S+ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 653 QSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705


>gi|293570829|ref|ZP_06681876.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
 gi|291609097|gb|EFF38372.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
          Length = 719

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALAAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|257885401|ref|ZP_05665054.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257821257|gb|EEV48387.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
          Length = 719

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPAAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|323341318|ref|ZP_08081562.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus
           ruminis ATCC 25644]
 gi|323091195|gb|EFZ33823.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus
           ruminis ATCC 25644]
          Length = 702

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 163/727 (22%), Positives = 282/727 (38%), Gaps = 85/727 (11%)

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
              R  L+K  +  L    +   K      +  + E+    +E G     + E      +
Sbjct: 3   EAGRIRLDK-DQAALKLFLEDEVKPKIKRFEKKH-EHVKWMVENGYYDEEVFERYTAEFI 60

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
             L   L+        ++     Y +Y +  N  +I + + F  RV           E+ 
Sbjct: 61  DGLDERLRKAGFRFRTFMSAYKFYAQYAMKTNDQKIWL-EDFCDRVLACALTFADGDEEL 119

Query: 339 AVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A      +    F  +TP+  N+   R  +  SCFL    DD+  I   +     L++  
Sbjct: 120 AEMIGEEIVHQRFQPATPSFLNAGRKRRGEFVSCFLLQTTDDMNSIGRMINSALQLSRIG 179

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+G + + +RG GA I    G + GV+P +K+  D+    NQ G+R+GA   YL  +H 
Sbjct: 180 GGVGVNLSNLRGRGASIKQIKGVASGVVPVMKLLEDSFSYSNQLGQRQGAGAVYLNVFHP 239

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DV EFL  +K   D++ R   ++    +PD F +   +N    LF P  V   +      
Sbjct: 240 DVLEFLGTKKENADEKIRVKTLSLGLVVPDKFYELARKNEEMCLFEPYTVEKEYHC-PFS 298

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
           +    + YE+  +   I+  +KISA  L  ++  +  E+G+P+I   D  N        G
Sbjct: 299 YVDLTKEYEKMVENPRIEK-KKISARMLEEEISKLQQESGYPYIVNIDTVNA--GNPIKG 355

Query: 578 VVHSSNLCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
            +  SNLC+EI                       CNLGS N+                ++
Sbjct: 356 KIVMSNLCSEILQVQEPSVINDEQEYVKLGRDISCNLGSTNIANLMKAP-----DFGRSV 410

Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +T V+ L  V D  N  ++      N T  AIGLG MG  S L    I Y S EA+E   
Sbjct: 411 KTMVKALTEVSDESNIKSVPSVAHGNETAHAIGLGAMGLHSFLAQNKIRYGSKEALEFVS 470

Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDE 735
                +++  + AS E+A E+   +  F  S +  G +  +              E+   
Sbjct: 471 TYFMLLNYWTLVASNEIAIEKKQMFDGFLESGYADGSYFEEYENADSTLHFSKTKELFKG 530

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SN 794
           + +       W  L++ V   G+ N N +A+APT +I+ I   + S+ P  + +  +   
Sbjct: 531 IFIPSA--KDWGRLRQNVMRHGLYNQNRLAVAPTGSISYINDTTASLQPIVRVVEERQEK 588

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             G                                       + ++    + +A+++D  
Sbjct: 589 KIGKIYYPAP-------------------------------GLSEETLPYYTSAYDLDMR 617

Query: 855 WLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLK 898
            +I++ +  QK +DQ  SL L++                +E + + L  +   A+   +K
Sbjct: 618 CVIDTYAAAQKHVDQGLSLTLFMRSKPSADLYEWKKGHKEELTTRDLTILRHYAFRKKIK 677

Query: 899 TTYYLRS 905
           + YY+R+
Sbjct: 678 SIYYVRT 684


>gi|255325477|ref|ZP_05366579.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
 gi|255297415|gb|EET76730.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Corynebacterium tuberculostearicum SK141]
          Length = 731

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 161/675 (23%), Positives = 272/675 (40%), Gaps = 79/675 (11%)

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERDFAF-------EYLGLQILYDRYFLH-INGSRI- 314
             L+     + D + L     L    D A         +LG    +  Y L   +GSR  
Sbjct: 81  EWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFLGAFKFFTSYALKTFDGSRFL 140

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E  +    RVA          E+ A +  + + +  F  +TPT  N+G     ++ SCFL
Sbjct: 141 EGYEE---RVATTALYLAQGDEELAEKLVDGIMTGRFQPATPTFLNAGKAQRGEMVSCFL 197

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D+L  I   +     L+K  GG+    + +R  GA I     ++ GV+P +K+  D
Sbjct: 198 LRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPIKKIENQASGVVPVMKILED 257

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 258 SFSYANQLGSRQGAGSVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFRLA 317

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N    LFSP +++  + +   +     E Y+       I     I A   +  +  + 
Sbjct: 318 KENKDMHLFSPYDIAREYGVAMSDMS-ITEYYDELVANPRISHT-TIKAREFFTTLAELQ 375

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCN 601
           FE+G+P+I F+D  N  +P    G ++ SNLC+EI               ++  +   CN
Sbjct: 376 FESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYGASGDYTTVGQDISCN 433

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+   F +          T+ TAVR L  V D+ N   +      N +  AIGLG 
Sbjct: 434 LGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPSIAHGNASMHAIGLGQ 488

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    IPY   EA++  +     +++HA+ AS  LA E+   ++ F+ S +  G
Sbjct: 489 MNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEKGQRFTGFEESTYATG 548

Query: 720 VFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    I                E  +    R  W  LK  V   G+ N+   A+ PT +
Sbjct: 549 AYFDKYIDQDWAPTTEHVKQLFHEAGVQIPQREDWLRLKNLVMQDGIYNAYLQAVPPTGS 608

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G                                 
Sbjct: 609 ISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP-------------------------- 642

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 + +D  +    ++ +    +I++ +   + +DQ  SL L+   + + + ++   
Sbjct: 643 -----EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTLFFTADTTTRDINKAQ 697

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 698 IYAWKAGIKTLYYIR 712


>gi|256375568|ref|YP_003099228.1| vitamin B12-dependent ribonucleotide reductase [Actinosynnema mirum
           DSM 43827]
 gi|255919871|gb|ACU35382.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Actinosynnema mirum DSM 43827]
          Length = 948

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 127/629 (20%), Positives = 230/629 (36%), Gaps = 28/629 (4%)

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382
           V       ET+ E    E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  
Sbjct: 114 VKHAYFATETDAEVFEHELTWMLLHQVFSFNSPVWFNVGTASPQQVSACFILSVDDTMES 173

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I    +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G 
Sbjct: 174 ILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGG 232

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             R+ A    L+  H DVEEF+  +    D  R   D      +        +       
Sbjct: 233 ATRRAAKMVVLDVDHPDVEEFIQTKAREEDKIRALRDAGFDMDL------GGSDIVSVQY 286

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            + +    + D + + FE   E   R   RG  +V   + A +L+RK+    +E   P I
Sbjct: 287 QNANNSVRVSDEFMRAFEGGKEFGLR--SRGTGEVIETVDAKSLFRKLAQAAWECADPGI 344

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDK 620
            +    N        G + +SN C+E        + + CNL S+NL+     +  F+ D 
Sbjct: 345 QYDGTINDWHTTPESGRITASNPCSEYMH----LDNSSCNLASLNLMKFLGDDGSFNADL 400

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
            A ++   +  +D  I           ++    R +G+G     + L      Y S    
Sbjct: 401 FARSVELIITAMDISICFADFPTPAIGETTRAFRQLGIGYANLGALLMATGHAYDSEGGR 460

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DEL 736
            +A      +   +   S ELA   G Y  +  +                E+R    ++ 
Sbjct: 461 ALAASITSLMQAVSYRRSAELAGVVGPYDGYARNAESHKRIIRKHASANDEIRTLHANDA 520

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794
                +   W   ++     G RN+    +APT TI  +    +  I+P    + + K  
Sbjct: 521 DTRSLATAEWQRCQEIGAVNGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLV 580

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF--- 849
             G   +VN  +   L       E + + +++    G + +   +  +  ++   A    
Sbjct: 581 GGGSMQIVNQTVPRALSALGYPTEQVEAIVEHIGEHGHVVDAPSLKLEHYEVFDCAMGER 640

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I PM  +   +  Q ++  A S  + + E  + ++++ +Y Q W MGLK     R    
Sbjct: 641 SITPMGHVRMMAAVQPFLSGAISKTVNMPETATVEEVEEVYYQGWKMGLKALAIYRDNCK 700

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
                S  KG      A    +       
Sbjct: 701 VGQPLSAGKGAKASTAAEKAPETVIEYRP 729


>gi|293553989|ref|ZP_06674591.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
 gi|291601846|gb|EFF32096.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
          Length = 719

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|257899643|ref|ZP_05679296.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|257837555|gb|EEV62629.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
          Length = 719

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALAAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGKSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|262362561|gb|ACY59282.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis
           D106004]
          Length = 583

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 151/603 (25%), Positives = 258/603 (42%), Gaps = 60/603 (9%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381
            VA+ LA   T  +  A E    + S  F  +TPT  N G +   +L SCFL  + D++ 
Sbjct: 1   MVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNME 57

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+  D     NQ 
Sbjct: 58  SIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQL 117

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +    N    L
Sbjct: 118 GARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYL 177

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPW 560
           FSP    D+  +YG        + + +      ++ + KI A   ++ +  + FE+G+P+
Sbjct: 178 FSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQILAEIQFESGYPY 234

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFAN 613
           + F+D  N  +P    G ++ SNLC+EI   ++  E              S NL +    
Sbjct: 235 MMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLGSLNIA 292

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              D      +I  A+R L  V ++ N  ++   +K N    AIGLG M     L    +
Sbjct: 293 QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERL 352

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE 731
            Y S EA++  +     +++HAI AS +LA ER   +  F  S +  G F    I    +
Sbjct: 353 FYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAFFSKYIEQSWQ 412

Query: 732 VR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
            +         +  +   ++  W  L++ V   G+ N N  A+ PT +I+ I   + SI 
Sbjct: 413 PKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIH 472

Query: 784 PSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           P    + ++     G       ++ N+                                 
Sbjct: 473 PIVSPIEIRKEGKIGRVYYPAPYMTND-------------------------------NL 501

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTY 901
           + +  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT Y
Sbjct: 502 EYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIY 561

Query: 902 YLR 904
           Y+R
Sbjct: 562 YIR 564


>gi|311115216|ref|YP_003986437.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14019]
 gi|310946710|gb|ADP39414.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14019]
          Length = 740

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 166/745 (22%), Positives = 286/745 (38%), Gaps = 82/745 (11%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY------ 252
           +T    S+   I    +Y  + A   L    + +     ++ +K         +      
Sbjct: 20  DTNTASSTAERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFAS 79

Query: 253 -PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311
             E     I        +        L       +        +LG    Y  Y L    
Sbjct: 80  THERLNYLISNYYYNGNVFGKYSSEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFD 139

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
            +  +        A+ L L +   EK A+ + + + +  F  +TPT  N G     +  S
Sbjct: 140 GKQYLENFAQRAAAVALELAD-GDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVS 198

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+
Sbjct: 199 CFLVRLEDNMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKL 258

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 259 LEDSFSYANQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITF 318

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549
           +   +     LFSP    D+   YGK F                ++ +K I A   +  +
Sbjct: 319 ELAKRKEKMALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTL 375

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI               S     
Sbjct: 376 AEIQFESGYPYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRD 433

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656
             CNLGS+N+             L +++  AVR L +V +  +  ++   ++ N    AI
Sbjct: 434 ISCNLGSLNIAKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAI 487

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715
           GLG M     L   H+ Y S EA++  D     +++HA  AS  LA ERG  ++SFK S 
Sbjct: 488 GLGQMNLHGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSA 547

Query: 716 WDQGVFPIDSIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           + +     +                    ++     +   +   W++L+  +   G+ N 
Sbjct: 548 YAKPAGKGNYFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILRDGIYNE 607

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              A+ PT +I+ I   + SI P    + ++     G      +++ N+           
Sbjct: 608 YLQAVPPTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM--------- 658

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                 +    A+EI    +I++ +   + +DQ  SL L+  + 
Sbjct: 659 ----------------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDT 696

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
            + + L+     AW  G+KT YY+R
Sbjct: 697 TTTRDLNKAQIYAWRKGIKTLYYIR 721


>gi|125745091|ref|YP_001033968.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 2]
 gi|327488428|sp|Q77MS1|RIR1_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|7673150|gb|AAF66774.1|AF147806_38 ribonucleotide reductase large subunit [Gallid herpesvirus 2]
 gi|10180744|gb|AAG14232.1|AF243438_47 UL39 ribonucleotide reductase large subunit-like protein [Gallid
           herpesvirus 2]
 gi|148806368|gb|ABR13124.1| UL39 [Gallid herpesvirus 2]
 gi|194346459|gb|ACF49641.1| UL39 [synthetic construct]
 gi|194750452|gb|ACF94929.1| UL39 [Gallid herpesvirus 2]
 gi|237626302|gb|ACR02825.1| UL39 [synthetic construct]
          Length = 822

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 162/698 (23%), Positives = 285/698 (40%), Gaps = 67/698 (9%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E V     + + ++ D++     +            L+  Y+ Y + +   + E    FF
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201

Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +R+A   A + + K+                   F+  L++  F+ STP +   G     
Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261

Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +SC+L      +    +    ++        GG+G     + G             G++
Sbjct: 262 TASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484
             +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A W
Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370

Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             DL  KR  ++                S L  L+ +EFE  YE  E      E      
Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598
           I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + +    
Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485

Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           VC+L SINL     N     QFD+D L   +R A   ++ +++ +    EK+      +R
Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           ++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ F  
Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA  A
Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829
            +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+  + 
Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716

Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882
           +I        +   +  + TAF+ D   LI+  S R  ++DQ+QS+ L++ E +      
Sbjct: 717 NIQTALGNKPECHSLLKYKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLA 776

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
            ++  +   A+  GLKT  YY + R AT+       G 
Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNAGVFCGDGE 814


>gi|82492125|gb|ABB77922.1| ribonucleotide reductase alpha chain [Environmental halophage 1
           AAJ-2005]
          Length = 569

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 241/590 (40%), Gaps = 112/590 (18%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
            A  FY  +S   +  ++P   N G       SCF + + D+   +     E   + K  
Sbjct: 61  FADRFYEYMSRGFYSLASPVWSNFGLDRGLPISCFGSYIEDNTESLLYTQAEVGEMTKLG 120

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG    +  +R  G+ I   NGKS G   F ++ +     ++QGG R+G    Y++  H 
Sbjct: 121 GGTSGYFGNLRPRGSSI-TNNGKSNGSYSFTELFDTEISVISQGGTRRGQFAGYIDVEHD 179

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D++E+L+++     +  +  +M     I D + + +                        
Sbjct: 180 DLDEWLNIKT----EGDKIQNMYYGVIIGDDWFQSMIDGDE------------------- 216

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                                       W  ++      G P+I F+D  N   PQ +  
Sbjct: 217 -----------------------DKRETWANIVETRINIGVPYIIFRDNMNGGKPQVYKD 253

Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               +++SNLCTEI+L ++  E+ VC L S+N L       FD  K    + T  R LD 
Sbjct: 254 KNYQINASNLCTEISLPATPTESFVCCLSSMNAL------HFDEWKDTDAVETLTRFLDA 307

Query: 635 VIDINCHT-----------IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           V++                +++A +    HRAIG+G++G+ S L    IP+ S +A+   
Sbjct: 308 VMEEFIQEAQGNEYLGVDLMQRAVRFAERHRAIGIGVLGWHSYLQSKMIPFDSMDAMREN 367

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           ++    I   + + S  +A E G     +G                              
Sbjct: 368 EKIFSMIEERSYAESERMADEFGEPEVLEG------------------------------ 397

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802
                        G RN+  M++APT + + I G VS SI+P   N +V+       T  
Sbjct: 398 ------------YGRRNATTMSVAPTKSSSVILGQVSASIEPLKSNYFVRDGAKLKSTQK 445

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
           N FL   LK R          +  +DGS+ +++ + D  K++  T  EI  M +I  A++
Sbjct: 446 NRFLEAILKDRGEDTRDTWDSIGRNDGSVQHLDCLDDHEKEVFKTFSEIPQMAIINQAAQ 505

Query: 863 RQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           RQ  IDQ+QS+N+ ++  E S K+++ +Y +AW  G+K+ YY  S +A  
Sbjct: 506 RQDHIDQSQSVNISINPDEVSVKEMNQLYIEAWRKGVKSLYYQHSVNAAQ 555


>gi|328958550|ref|YP_004375936.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328674874|gb|AEB30920.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 732

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 165/686 (24%), Positives = 279/686 (40%), Gaps = 74/686 (10%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLHINGSR 313
             YI+  V      +    +D  ++    K  Y  +F F  ++G    Y +Y L  N   
Sbjct: 66  NNYIDLEVLTLYKQDESDQYDFAFIKKIFKQIYAANFKFKSFMGAYKFYSQYALKTNDHS 125

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
             + Q    R+A             A++    L S  +  +TPT  N+G +   ++ SCF
Sbjct: 126 KYLEQFE-DRIAFNALYLGNGDRTLAIQLAEELISQRYQPATPTFLNAGKKKRGEMISCF 184

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D +  I   +     L++  GG+G + + +R  G  I      S GV+P +K+  
Sbjct: 185 LIDIADSMLSIGRGVNSALQLSRIGGGVGVNLSNIRSAGDPIKDIANASSGVLPVMKLLE 244

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D     NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD + + 
Sbjct: 245 DAFSYSNQLGQRNGAGVVYLNVFHPDILGFLSTKKENADEKIRVKTLSLGLVVPDKYYEL 304

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
           +  N    LFSP  V      YG  F     + E       + + +  I+A  L +++  
Sbjct: 305 IKTNKPMYLFSPYSVEKE---YGIPFSYIDLSAEYDNMVENLNIKKTQINARELEQEISR 361

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GS 604
           +  E+G+P+I   D  N  +P    G +  SNLC+EI                      S
Sbjct: 362 LQQESGYPYILNIDTANNTNPV--DGKIIMSNLCSEILQPQEPSTLNADLSYEQTGTDIS 419

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGF 663
            NL +    N       A ++  AVR L  V D +    +    K N  +  IGLG MG 
Sbjct: 420 CNLGSSNIMNMLQSPNFAKSVNLAVRALTTVTDSSNVLEVPTISKGNSMYHTIGLGAMGL 479

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
            +AL L  I Y S E++E  +     +++H++ AS E+AQER   +  F+ S +  G + 
Sbjct: 480 HTALALHQIEYGSKESIEFTEAYFLALNYHSLIASNEIAQERGETFFGFEKSKYADGSYF 539

Query: 723 IDSIG----LLAEVRDELAMN--RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
              +     L+ E    + +N    +   W +LK++V   G+ + N +A+AP  +I+ + 
Sbjct: 540 NPYLESEFTLVNEKVKNIFVNIQLPTVADWKDLKEKVFQHGLYHRNRLAVAPNGSISYVN 599

Query: 777 GVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             S S+ P  Q +  +     G       FL N                           
Sbjct: 600 ETSASLHPITQLIENRQEKKVGSIFYPAPFLSN--------------------------- 632

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--------------- 880
               +    + +A++ D   +I+  +  QK IDQ  SL L++                  
Sbjct: 633 ----ETLPYYKSAYDYDQRKIIDIYAAAQKHIDQGMSLTLFMRSTLPENIYEWKTGVSSK 688

Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + + L+ +   AW  G+K+ YY+R+
Sbjct: 689 LTTRDLNRLRNYAWTKGIKSLYYIRT 714


>gi|311741269|ref|ZP_07715093.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303439|gb|EFQ79518.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 731

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 161/675 (23%), Positives = 273/675 (40%), Gaps = 79/675 (11%)

Query: 266 ARLLHESMMDFDLVYL--ANDLKYERDFAF-------EYLGLQILYDRYFLH-INGSRI- 314
             L+     + D + L     L    D A         +LG    +  Y L   +GSR  
Sbjct: 81  EWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFLGAFKFFTSYALKTFDGSRFL 140

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E  +    RVA          E+ A +  + + +  F  +TPT  N+G     ++ SCFL
Sbjct: 141 EGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQPATPTFLNAGKAQRGEMVSCFL 197

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D+L  I   +     L+K  GG+    + +R  GA I     ++ GV+P +K+  D
Sbjct: 198 LRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPIKKIENQASGVVPVMKILED 257

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 258 SFSYANQLGSRQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFRLA 317

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N    LFSP +++  + +   +     E Y+       I     I A   +  +  + 
Sbjct: 318 KENKDMHLFSPYDIAREYGVAMSDMS-ITEYYDELVANPRISHT-TIKAREFFTTLAELQ 375

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCN 601
           FE+G+P+I F+D  N  +P    G ++ SNLC+EI               ++  +   CN
Sbjct: 376 FESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYGASGDYTTVGQDISCN 433

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+   F +          T+ TAVR L  V D+ N   +      N +  AIGLG 
Sbjct: 434 LGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPSIAHGNASMHAIGLGQ 488

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    IPY   EA++  +     +++HA+ AS  LA E+   ++ F+ S +  G
Sbjct: 489 MNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEKGQRFTGFEESTYATG 548

Query: 720 VFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    I                E  +    R  W  LK +V   G+ N+   A+ PT +
Sbjct: 549 AYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQVMQDGIYNAYLQAVPPTGS 608

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G                                 
Sbjct: 609 ISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP-------------------------- 642

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                 + +D  +    ++ +    +I++ +   + +DQ  SL L+   + + + ++   
Sbjct: 643 -----EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTLFFTADTTTRDINKAQ 697

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 698 IYAWKAGIKTLYYIR 712


>gi|269123321|ref|YP_003305898.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Streptobacillus moniliformis DSM 12112]
 gi|268314647|gb|ACZ01021.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Streptobacillus moniliformis DSM 12112]
          Length = 694

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 158/685 (23%), Positives = 288/685 (42%), Gaps = 62/685 (9%)

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRY 305
             ++       I+  ++          +    +    K  Y + F F  Y+     Y  Y
Sbjct: 39  NTVFFHNLKEKIDYLIEKDYYINFYDMYSFEEINEVFKFVYSKKFRFKSYMAASKFYQSY 98

Query: 306 --FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                     +E  +     VA+ L       +++A+++  +L +  +  +TPT  N+G 
Sbjct: 99  ALMDDTGEKILERYEDRISIVALYLGQG---NKEKALKYAKMLINQEYQPATPTFLNAGK 155

Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           +   +L SCFL  + D+L GI  A +    L+   GG+  + + +R  G  I G  G++ 
Sbjct: 156 KRSGELVSCFLDEIGDNLSGIGYAFESAMKLSSIGGGVAFNISKLRARGEAIKGVEGRAS 215

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P +K+  D     NQ G+R GA   YL  +H D+ EFLD +K   D++ R   ++  
Sbjct: 216 GVLPIMKILEDIFSYANQLGQRPGAGAVYLNVFHSDILEFLDTKKINVDEKIRIKSLSIG 275

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             I D FM+  + +     F P  V   +  Y  + +   E YE+     ++K  +KI+ 
Sbjct: 276 VIISDKFMELASADLPCYTFYPHSVYLEYGKYLDDLD-MNEWYEKLVANPKVKK-KKINV 333

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSE 595
                K+     E+G+P++ FKD  N     + +G V  +NLCTEI         N+  E
Sbjct: 334 REFLVKVAQTQKESGYPYLFFKDNANREHALKEIGDVKFTNLCTEIMQLTEVSDINNYYE 393

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654
           E  +    S NL +       +   +   ++ A+  L  V D+ N   +   KK+N    
Sbjct: 394 EDNIRRGISCNLGSVNIAKVMENKSIKEVVKNAIDSLTTVSDLTNISIVPSIKKANDELS 453

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           ++GLG M     L    I Y S EA++  +     ++++++  S+E+A+ER  ++  F+ 
Sbjct: 454 SVGLGAMNLHGYLAKNMIQYESREALDFCNVFFMMMNYYSLERSMEIAKERSRSFLGFEK 513

Query: 714 SLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           S +  G +    I          + E+ + + +       W +LK+ V   G+ N+  MA
Sbjct: 514 SEYANGKYFEKYITKEYMPVTDRVKELFEGIHIPGV--EEWKKLKEDVMKYGVYNAYRMA 571

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           IAP  + + I   + S+ P    + V+            +L  +                
Sbjct: 572 IAPNQSTSYIMNATASVMPIVDKVEVREYGDSTTFYPMPYLNYD---------------- 615

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
                              + +A+++D   +++  S  Q+ +DQ  S  L+     + + 
Sbjct: 616 ---------------NFFYYKSAYDMDQKNILKLISVIQRHVDQGISTILFTKSNDTTRD 660

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSAT 909
           L  +Y  A  +GLK+ YY R+R +T
Sbjct: 661 LSKLYILAHKLGLKSLYYTRTRKST 685


>gi|146318861|ref|YP_001198573.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis 05ZYH33]
 gi|146321069|ref|YP_001200780.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis 98HAH33]
 gi|253751942|ref|YP_003025083.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis SC84]
 gi|253753765|ref|YP_003026906.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis P1/7]
 gi|253755357|ref|YP_003028497.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           suis BM407]
 gi|145689667|gb|ABP90173.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis
           05ZYH33]
 gi|145691875|gb|ABP92380.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis
           98HAH33]
 gi|251816231|emb|CAZ51858.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis SC84]
 gi|251817821|emb|CAZ55574.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis BM407]
 gi|251820011|emb|CAR46181.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus suis P1/7]
 gi|292558518|gb|ADE31519.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           suis GZ1]
 gi|319758304|gb|ADV70246.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           suis JS14]
          Length = 719

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 160/718 (22%), Positives = 291/718 (40%), Gaps = 84/718 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E +   + +       +   +  +      E  ++   L +   +F ++ +   L
Sbjct: 28  LHKDQEAVKAFFTENVLPNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEF-IIKIDQFL 86

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           K +      ++     Y++Y L  N     + ++   RV           E+ A+   N 
Sbjct: 87  KDQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGDEELALNLANE 145

Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MIHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGV-PYSYLDITEK 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNL
Sbjct: 325 YDELVANPRIRKTK-IKARDLETEISKLQQESGYPYVINIDTANRSNPV--DGKIIMSNL 381

Query: 585 CTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                S      CNLGS N++    +          ++RT  R L
Sbjct: 382 CSEILQVQTPSILNDSQEYLSMGTDVSCNLGSTNIVNLMKSP-----DFGRSVRTMTRAL 436

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  +   +   +  N    +IGLG MG  S L    I Y S  AVE  +     ++
Sbjct: 437 TYVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLN 496

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +  +  S  +A+ER   + +F  S +  G +    +          + E+ + + +   S
Sbjct: 497 YWTLVESNNIARERKATFHNFDKSKYADGTYFDKYVTGDYQPQSDRVKELFEGIFIP--S 554

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801
              W EL+++V   G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G    
Sbjct: 555 GQDWAELREKVMADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                        L  E +                        + +A+++D   +I+  +
Sbjct: 615 P---------AAGLTTETI----------------------PFYKSAYDMDMRKVIDVYA 643

Query: 862 RRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
              + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 644 AATEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|703072|gb|AAA80556.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2]
          Length = 820

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 165/684 (24%), Positives = 272/684 (39%), Gaps = 76/684 (11%)

Query: 285 LKYERDF-----AFEYLGLQIL--YDRYFLHINGSRIEMPQAFFMR-------------- 323
           +   R +       + LGLQ    Y+ Y + + G + E    FF+R              
Sbjct: 156 MDMLRFYGNIYPQLKRLGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKP 215

Query: 324 -VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-- 380
            +A         +      F+  L+   F+ STP +   G      +SC+L         
Sbjct: 216 LIASLTNGSANWRTAFT-SFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQ 274

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I     +        GG+G     V            +  G++  LK+ +   VA N 
Sbjct: 275 DTIKVITNDVVPHLLARGGIGISLQHV-----------NQKSGLMHVLKLIDSLIVATNV 323

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV------ 493
              R   VC YLE WH D+   L +R     ++ RR  ++  A W  DL  KR       
Sbjct: 324 NESRPTGVCVYLEPWHSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNG 383

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N  WTLF     S L  LYG +FE+ YE  E+     E     +I    +   ++   
Sbjct: 384 EKNVMWTLFD-SRASILSKLYGDKFEVEYERLEK-----EGIGVAQIPIRDMMFAIIKSA 437

Query: 554 FETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
             TG P+I FKD CN        G  +  SNLCTEI   ++     VC L SINL     
Sbjct: 438 ASTGSPFILFKDACNRHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVR 497

Query: 613 NNQFDYDK----LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               + +     L    R A    + ++D +     K++     +R+IG+G+ GF +A+ 
Sbjct: 498 RVNVNVNSILMPLGMPFRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAML 557

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727
            L +         +  +  E +   A++ S E  +     +  F  S + QG    D   
Sbjct: 558 SLGLDLEDGAVRALNKQIFELMLLEAMTVSCEFCERGLPPFPDFSDSYYAQGRLHFDGWD 617

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                    ++  T+   W  L+ R+ + G+ N+  +A+ PTA  A +  VS+   P + 
Sbjct: 618 ---------SVELTAPEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFS 668

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI-----GNIERIPDDLK 842
           N++ K   +G+    NS L+ +++Q    +E           S        +   P+  +
Sbjct: 669 NMFSKVTSAGELLRPNSQLMRDVRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTR 728

Query: 843 KI-HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMG 896
            + + TAFE D   LI+  + R  ++DQ+QS+ L++ E +       ++  +   A+  G
Sbjct: 729 LLKYKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAG 788

Query: 897 LKT-TYYLRSRSATSVEKSTLKGV 919
           LKT  YY + R AT+    +  G 
Sbjct: 789 LKTGMYYCKIRKATNTGIFSGDGE 812


>gi|76818467|ref|YP_337183.1| ribonucleotide reductase, coenzyme B12-dependent [Burkholderia
           pseudomallei 1710b]
 gi|76582940|gb|ABA52414.1| Ribonucleotide reductase, Coenzyme B12-dependent [Burkholderia
           pseudomallei 1710b]
          Length = 871

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 41  QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 96

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 97  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 156

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 157 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 216

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 217 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 265

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 266 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 322

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+  LA   RT VR LD+V
Sbjct: 323 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 378

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y S +  + A      +   A 
Sbjct: 379 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 438

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA++ F  + +                   L     +    +++++ ++ 
Sbjct: 439 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 479

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 480 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 528

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +G +            +A ++     +   +  Q +ID + S
Sbjct: 529 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 581

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 582 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 636


>gi|167905562|ref|ZP_02492767.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei NCTC 13177]
 gi|254185407|ref|ZP_04891995.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1655]
 gi|184209642|gb|EDU06685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1655]
          Length = 844

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+  LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y S +  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA++ F  + +                   L     +    +++++ ++ 
Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +G +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609


>gi|53721516|ref|YP_110501.1| ribonucleotide reductase protein [Burkholderia pseudomallei K96243]
 gi|126443851|ref|YP_001061740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 668]
 gi|134283051|ref|ZP_01769753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 305]
 gi|167741547|ref|ZP_02414321.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 14]
 gi|167818742|ref|ZP_02450422.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 91]
 gi|167827116|ref|ZP_02458587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 9]
 gi|167848614|ref|ZP_02474122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei B7210]
 gi|167913872|ref|ZP_02500963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 112]
 gi|167921786|ref|ZP_02508877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei BCC215]
 gi|217424572|ref|ZP_03456070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 576]
 gi|226196550|ref|ZP_03792131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pakistan 9]
 gi|254187293|ref|ZP_04893807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254198951|ref|ZP_04905369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei S13]
 gi|254264773|ref|ZP_04955638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1710a]
 gi|254296714|ref|ZP_04964168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 406e]
 gi|52211930|emb|CAH37935.1| putative ribonucleotide reductase protein [Burkholderia
           pseudomallei K96243]
 gi|126223342|gb|ABN86847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 668]
 gi|134245699|gb|EBA45791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 305]
 gi|157806658|gb|EDO83828.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 406e]
 gi|157934975|gb|EDO90645.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169657123|gb|EDS88517.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei S13]
 gi|217392496|gb|EEC32520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 576]
 gi|225931426|gb|EEH27432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei Pakistan 9]
 gi|254215775|gb|EET05160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1710a]
          Length = 844

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+  LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y S +  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA++ F  + +                   L     +    +++++ ++ 
Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +G +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609


>gi|167897188|ref|ZP_02484590.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 7894]
          Length = 844

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+  LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFAIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y S +  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA++ F  + +                   L     +    +++++ ++ 
Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +G +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609


>gi|104304004|gb|ABF72279.1| HSV-1 UL39-like protein [Gallid herpesvirus 2]
          Length = 822

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 163/698 (23%), Positives = 285/698 (40%), Gaps = 67/698 (9%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E V     + + ++ D++     +            L+  Y+ Y + +   + E    FF
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201

Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +R+A   A + + K+                   F+  L++  F+ STP +   G     
Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261

Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +SC+L      +    +    ++        GG+G     + G             G++
Sbjct: 262 TASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484
             +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A W
Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370

Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             DL  KR  ++                S L  L+ +EFE  YE  E      E      
Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598
           I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + +    
Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485

Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           VC+L SINL     N     QFD+D L   +R A   ++ +++ +    EK+      +R
Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           ++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ F  
Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA  A
Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829
            +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+  + 
Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716

Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882
           +I        D   +  + TAF+ D   LI+  S R  ++DQ+QS+ L++ E +      
Sbjct: 717 NIQTALGNKPDCHSLLKYKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLA 776

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
            ++  +   A+  GLKT  YY + R AT+       G 
Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNTGVFCGDGE 814


>gi|237509777|ref|ZP_04522492.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
 gi|235001982|gb|EEP51406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
          Length = 844

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 254/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q   W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQGLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+  LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y S +  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA+ERGA++ F  + +                   L     +    +++++ ++ 
Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +G +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609


>gi|329922843|ref|ZP_08278359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. HGF5]
 gi|328941616|gb|EGG37901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paenibacillus sp. HGF5]
          Length = 718

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 230/560 (41%), Gaps = 56/560 (10%)

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
              +    GG+G + + +R   A + G NG S G + +  + + T   + QGG R+GA+ 
Sbjct: 1   MTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVSWGGLFSYTTGLIEQGGSRRGALM 60

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             +  WH DVE+F+ +++  G    +  + N +  + + FMK V ++  W L  PD    
Sbjct: 61  LMMNDWHPDVEDFITVKQTMG----QVTNANLSVCVSNDFMKAVKEDLDWELVFPDTTDP 116

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
            +D         ++   R      I  ++ + A  +W  ++   +++  P + F +  N 
Sbjct: 117 DYDELWDGDLDKWKKAGRS-----IIPYKTVKAREVWHTIIESAWKSAEPGVVFMEYYNQ 171

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--YDKLASTIRT 627
            S   +   +  +N C E  L        VCNL ++NL   +     D  +D+LA+T R 
Sbjct: 172 MSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMNLSKFYDEANHDVAWDELATTTRY 227

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +VR LDNVID   +  E+ + +    R +GLG MG    +  L+I Y SPE++E  D+  
Sbjct: 228 SVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGLAELMIKLNIRYGSPESLEFLDKLY 287

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            FI+  A  AS ++A+E+G++ +F   L+ Q  F  +   +  E                
Sbjct: 288 GFIAREAYLASADIAEEKGSFQAFDAELFLQSGFMKNMAEVYPE---------------- 331

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            + + V+  G RN   +  APT +   + G S  I+P +   Y + +  G          
Sbjct: 332 -VAEAVRKKGARNVTVITQAPTGSTGTMVGTSTGIEPYFAFKYFRQSRLG---------- 380

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                   +DE  +   +    S        ++L   + TA  +     I   +  Q+W+
Sbjct: 381 --------FDEQFVPIAQDWLDSHPG-----EELPDYYVTAMSLSAEDHIRVQAAIQRWV 427

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
           D + S       + + +    +Y  A+ +G K     R  S       T K  D    A 
Sbjct: 428 DSSISKTANCPSDFTVEDTKRLYELAFDLGCKGVTIYRDGSRDVQVLQTEKKEDKAAEAT 487

Query: 927 PVTDPNSSTHSLGIPSSCTS 946
             +   ++        +   
Sbjct: 488 TASTAETALEQSAAGQAAEE 507


>gi|167722571|ref|ZP_02405807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei DM98]
          Length = 844

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 139/655 (21%), Positives = 254/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+  LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y S +  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS ELA+ERGA++ F  + +                   L     +    +++++ ++ 
Sbjct: 412 RASAELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +G +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609


>gi|86158038|ref|YP_464823.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774549|gb|ABC81386.1| ribonucleoside diphosphate reductase, B12-dependent
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 925

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 124/651 (19%), Positives = 234/651 (35%), Gaps = 71/651 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    E +      E  +L+       ++P  FN     HPQ S+CF+  V D +  I  
Sbjct: 116 GYFTTEADAATFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     + G  G++ G + F++  +  A  +  GGK R
Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNTAN 483
           + A    L+  H DV EF++ + +                        D     + N + 
Sbjct: 235 RAAKMVILDVDHPDVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            + D FM+ V ++  W                           +   R + +    I A 
Sbjct: 295 RVTDAFMRAVLEDREW---------------------------KLTARTDGEALETIRAR 327

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L R++    +  G P + F    N   P  +   +++SN C+E        + + CNL 
Sbjct: 328 DLMRQITEAAWLCGDPGMQFDTTINAWHPCPNTDRINASNPCSEYMF----LDDSACNLA 383

Query: 604 SINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           S+NL+   +    FD +     +   +   + ++    +      K++  +R +GLG   
Sbjct: 384 SLNLMHFRSIEGGFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYAN 443

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG--- 719
             + L    +PY S      A      ++  A + S  +A   G ++ ++ +        
Sbjct: 444 LGALLMASGLPYDSDGGRACAAAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGVI 503

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
                 + L+     E  +   +R  W +  ++    G RN     +APT TI  +    
Sbjct: 504 RKHAQHVDLVDPTLVEPGLLSAARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCD 563

Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIE 835
           +  I+P    + Y K    G   +VN+ +   L++     E + S L++ D   +I    
Sbjct: 564 TTGIEPDIALVKYKKLVGGGMLKIVNNTVPLALQKLGYSSEEITSVLQFIDEVETIEGAP 623

Query: 836 RIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
            +  +   +   AF        I  M  I      Q ++  A S  + +    + + ++ 
Sbjct: 624 GLRPEHAPVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            Y ++W +GLK     R     S   +T K  + + +              
Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEERKDVAEPRLARRRLPDE 734


>gi|157150204|ref|YP_001450837.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074998|gb|ABV09681.1| ribonucleoside-diphosphate reductase large chain [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 719

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 164/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  LA  +
Sbjct: 28  LHKDQEALEAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELAAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + +    RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYASGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|146322250|ref|YP_001174721.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus
           lactis]
 gi|145968741|gb|ABQ00019.1| putative ribonucleotide reductase subunit alpha [Lactococcus
           lactis]
          Length = 718

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 152/717 (21%), Positives = 273/717 (38%), Gaps = 77/717 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
              RE L        +        +  E     I        +     + +  ++     
Sbjct: 23  HYDREALEEYLNTEIRDNLKTFDSI-DEKLDYLISHDYIDESVLSIYGENNREFVKKLFI 81

Query: 287 YERDFAF---EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +  ++ F    ++     Y++Y +  N     +       V   L L   ++        
Sbjct: 82  FAYNYGFKFKSFMAAYKFYNQYAMKTNDLNYYLENFEDRAVFNALYLANGDRNLAHK-IL 140

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             L S  +  +TPT  N+G +   ++ SCFL  + D +  I   +     L++  GG+G 
Sbjct: 141 EELISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGV 200

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G+ I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ EF
Sbjct: 201 NLSNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEF 260

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           L  +K   D++ R   ++    +PD + + +  N    LF+P     +  +YG  F    
Sbjct: 261 LSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMCLFNP---YHVERVYGIPFSYVD 317

Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              E        ++ +  I+A  L +++  +  E+G+P+I   D  N  +P    G +  
Sbjct: 318 LTKEYDTMVANGEIEKTVINARELEQEISRLQQESGYPYILNIDTANRTNPV--KGKIIM 375

Query: 582 SNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           SNLC+EI                 V    S NL +    N  +      +I  A+R L  
Sbjct: 376 SNLCSEILQPQEPSILNLDLSYKKVGTDISCNLGSMNMVNLMEAKDFGKSIEYAIRALTT 435

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D      +      N  +  IGLG MG  + L L  I Y S EA+E  D     ++++
Sbjct: 436 VTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMNYY 495

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LP 745
           ++ AS +++ E    + +F+ S +  G +  D             + +            
Sbjct: 496 SLKASHQISIEKNETFHNFEYSRYADGSY-FDYYLAKKFHFTSEKVAKIFENILLPTIED 554

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W  LK+ V   G+ + N +AIAP  +I+ I   S S+ P  Q +  +     G       
Sbjct: 555 WQLLKENVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQEKKVGSIFYPAP 614

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L N                                  + + TA+ +D   +I+  ++ Q
Sbjct: 615 YLSN-------------------------------KTLRYYKTAYNMDQRKIIDIYAKAQ 643

Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           + IDQ  SL +++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 644 QHIDQGMSLTVFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGIKSLYYVRT 700


>gi|262283136|ref|ZP_06060903.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. 2_1_36FAA]
 gi|262261388|gb|EEY80087.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. 2_1_36FAA]
          Length = 719

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 164/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  LA  +
Sbjct: 28  LHKDQEALEAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELAAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + +    RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESSNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|261209283|ref|ZP_05923675.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289567002|ref|ZP_06447403.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium D344SRF]
 gi|294615273|ref|ZP_06695150.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1636]
 gi|260076829|gb|EEW64564.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289161203|gb|EFD09102.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium D344SRF]
 gi|291591870|gb|EFF23502.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1636]
          Length = 719

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 283/709 (39%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIACERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|308178759|ref|YP_003918165.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter
           arilaitensis Re117]
 gi|307746222|emb|CBT77194.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 721

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 162/672 (24%), Positives = 263/672 (39%), Gaps = 68/672 (10%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            I+          +     +  L   ++        +LG    +  Y L        +  
Sbjct: 73  LIDNNYYEEAFLRAYDPAFVTSLHERVQMAGHRFATFLGAFKFFTSYALRTFDGTTYLEN 132

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377
               RVA          E       + + S  F  +TPT  N+G     +L SCFL  + 
Sbjct: 133 FG-ERVAATALFLGQGNETLTTSLADEMISGRFQPATPTFLNAGKAQRGELVSCFLLRLE 191

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D+L  I   +     L+K  GG+    T +R  GA I     ++ GV+P +K+  D+   
Sbjct: 192 DNLESIGRGVNSALQLSKRGGGVALLLTNLRETGAPIKQIQNQASGVVPVMKILEDSFSY 251

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K   +N 
Sbjct: 252 ANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDVTFKLAKENR 311

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFET 556
              LFSP    D+   YGK       N          ++ +  ISA   ++ +  + FE+
Sbjct: 312 DMHLFSP---YDVAREYGKPLSDLSVNDHYDELVANPRIRKTTISAREFFKTLAELQFES 368

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGS 604
           G+P++ F+D  N  +P    G V+ SNLC+EI               +       CNLGS
Sbjct: 369 GYPYVLFEDTVNRANPL--AGHVNMSNLCSEILQVNTPSTLDTAGGYTKIGNDISCNLGS 426

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663
           +N+ A       D     +TI TAVR L +V D  +   +      N+   AIGLG M  
Sbjct: 427 LNIAAA-----MDSPDFGATIETAVRALTSVSDQTDIDAVPSIAAGNNASHAIGLGQMNL 481

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
              L    I Y S E ++  D     +++HA+  S ++A ER   ++ F  S +  G + 
Sbjct: 482 HGFLASQRIRYGSEEGIDFTDIYFLTVTYHALRVSNQIAIERGTTFAGFGTSAYADGSYF 541

Query: 723 IDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
              I        E        + +   +R  W  L+K V   G+ N+   AI PT +I+ 
Sbjct: 542 DKYIERDWLPATERVAALFSQVGIAIPTREDWQALRKSVMAHGIYNAYLQAIPPTGSISY 601

Query: 775 ICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           +   + SI P    + ++     G        +                           
Sbjct: 602 VNNATASIHPIAAKIEIRKEGKLGRLYYPAPHM--------------------------- 634

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                D   +    A+EI    +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 635 ----TDANIEFFEDAYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDSATTRDINKAQIYA 690

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 691 WRAGIKTLYYIR 702


>gi|69245953|ref|ZP_00603725.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|257880354|ref|ZP_05660007.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257891013|ref|ZP_05670666.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257894266|ref|ZP_05673919.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|258614694|ref|ZP_05712464.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium DO]
 gi|260562342|ref|ZP_05832856.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|293563176|ref|ZP_06677634.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1162]
 gi|293568384|ref|ZP_06679705.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1071]
 gi|294617335|ref|ZP_06696974.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1679]
 gi|314939362|ref|ZP_07846603.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a04]
 gi|314941565|ref|ZP_07848450.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133C]
 gi|314949608|ref|ZP_07852932.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0082]
 gi|314953715|ref|ZP_07856590.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133A]
 gi|314992171|ref|ZP_07857615.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133B]
 gi|314997662|ref|ZP_07862592.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a01]
 gi|68195483|gb|EAN09927.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|257814582|gb|EEV43340.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257827373|gb|EEV53999.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257830645|gb|EEV57252.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|260073266|gb|EEW61607.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|291588905|gb|EFF20732.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1071]
 gi|291596408|gb|EFF27662.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1679]
 gi|291604867|gb|EFF34343.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1162]
 gi|313588297|gb|EFR67142.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a01]
 gi|313593274|gb|EFR72119.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133B]
 gi|313594299|gb|EFR73144.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133A]
 gi|313599624|gb|EFR78467.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133C]
 gi|313641347|gb|EFS05927.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0133a04]
 gi|313644032|gb|EFS08612.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium TX0082]
          Length = 719

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVNITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|257125879|ref|YP_003163993.1| ribonucleoside-diphosphate reductase, subunit alpha [Leptotrichia
           buccalis C-1013-b]
 gi|257049818|gb|ACV39002.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia
           buccalis C-1013-b]
          Length = 699

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 160/683 (23%), Positives = 284/683 (41%), Gaps = 58/683 (8%)

Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--- 305
             ++       +   +K          +    +    K   D  F +         Y   
Sbjct: 44  NTVFFHNLEEKMRYLIKNDYYINFYEMYSHDEIKEVFKLVYDKKFRFASFMSASKFYQSY 103

Query: 306 --FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                     +E  +    R+A           ++A E+  +L +  +  +TPT  NSG 
Sbjct: 104 ALMDDTGEKFLERYED---RIATVSLYLAQGNVEKAKEYALMLINQEYQPATPTFLNSGK 160

Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
           +   +L SCFL  + D+L GI      +  L+   GG+  + + +R  G  I G  G++ 
Sbjct: 161 KRSGELVSCFLDEMGDNLSGIGYIFDSSMKLSSIGGGVSINLSKIRARGEAIKGVEGRAS 220

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           GV+P +K+  D     NQ G+R GA   YL  +H D+ EFLD +K   D++ R   ++  
Sbjct: 221 GVLPIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDINEFLDSKKINVDEKIRIKSLSIG 280

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             +P+ FM+   ++     F+P  V   +  Y  E +   E YE+  D   +K  +KI+A
Sbjct: 281 VIVPNKFMQLAIEDEVCYTFNPHTVFLEYGQYLDEMD-MNEMYEKLVDNPNVKK-KKINA 338

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSE 595
             L  K+     E+G+P++ FKD  N     + +G V  SNLCTEI         N+  E
Sbjct: 339 RELLVKISQTQKESGYPYLFFKDNANKEHALKEIGTVKFSNLCTEIMQLSEVSDINAYYE 398

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654
           E  +    S NL +       +  ++    + A+  L  V D+ N   +   KK+N    
Sbjct: 399 EDTIRRGISCNLGSLNIATVMENKRIKEATKAAIDSLTMVSDLTNIDIVPSIKKANDELH 458

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           ++GLG M     L    I Y S EA++  +     ++F+++  S+E+A+E+   +  F+ 
Sbjct: 459 SVGLGAMNLHGYLAKNFIMYESKEALDFCNVFFMMVNFYSLERSMEIAKEKGETFKDFEK 518

Query: 714 SLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           S +  G +       + +    +++     +   ++  W  LK++V   G+ N+  MAIA
Sbjct: 519 SEYANGNYFDKYITKEYVPQTEKIKQLFEGICIPTKEDWANLKEQVMKHGVYNAYRMAIA 578

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P  + + I   + S+ P    + V+            +L N+                  
Sbjct: 579 PNQSTSYIMNSTASVMPVVDTIEVREYGDSTTFYPMPYLTND------------------ 620

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886
                            + +A++++   +++  S  Q+ +DQ  S  LY     S + L 
Sbjct: 621 -------------NYFFYKSAYDMNQKNILKLISVIQRHVDQGISTILYTKSTDSTRDLA 667

Query: 887 FIYRQAWLMGLKTTYYLRSRSAT 909
            +Y  A  +GLK+ YY R+R AT
Sbjct: 668 RLYIYAHRLGLKSLYYTRTRKAT 690


>gi|332361650|gb|EGJ39454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1056]
          Length = 719

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 164/719 (22%), Positives = 282/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIP-- 553

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
           S   W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 554 SSEDWVELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|223932818|ref|ZP_03624815.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis 89/1591]
 gi|330833007|ref|YP_004401832.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           suis ST3]
 gi|223898527|gb|EEF64891.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis 89/1591]
 gi|329307230|gb|AEB81646.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           suis ST3]
          Length = 719

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 161/716 (22%), Positives = 292/716 (40%), Gaps = 80/716 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E +   +K+       +   +  +      E  ++   L +   +F ++ +   L
Sbjct: 28  LHKDQEAVKAFFKENVLPNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEF-IIKIDQFL 86

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           K +      ++     Y++Y L  N     + ++   RV           E+ A+   N 
Sbjct: 87  KDQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGNEELALNLANE 145

Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 MIHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL 
Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E 
Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGV-PYSYLDITEK 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNL
Sbjct: 325 YDELVANPRIRKTK-IKARDLETEISKLQQESGYPYVINIDTANRSNPV--DGKIIMSNL 381

Query: 585 CTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                +      CNLGS N++    +          ++RT  R L
Sbjct: 382 CSEILQVQTPSVINDSQEYLTMGTDVSCNLGSTNIVNLMKSP-----DFGRSVRTMTRAL 436

Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  +   +   +  N    +IGLG MG  S L    I Y S  AVE  +     ++
Sbjct: 437 TYVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLN 496

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           +  +  S  +A+ER   + +F+ S +  G +       D       V++    +   S  
Sbjct: 497 YWTLVESNNIARERKATFHNFEKSKYADGTYFDKYVTGDYQPQSERVKELFEGIFIPSGQ 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W +L+++VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G      
Sbjct: 557 DWADLREKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP- 615

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                      L  E +                        + +A+++D   +I+  +  
Sbjct: 616 --------AAGLATETI----------------------PFYKSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|168493104|ref|ZP_02717247.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576680|gb|EDT97208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC3059-06]
          Length = 719

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  LA  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMKDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|297622358|ref|YP_003703792.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera
           radiovictrix DSM 17093]
 gi|297163538|gb|ADI13249.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera
           radiovictrix DSM 17093]
          Length = 554

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 157/581 (27%), Positives = 245/581 (42%), Gaps = 94/581 (16%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
            A  F++ L+   +  S+P   N G       SCF + VPD + GI GA  E  +++KY 
Sbjct: 52  FAERFFDYLARGFYSLSSPIWANFGLSRGLPISCFGSYVPDSMAGILGAAAEVGIMSKYG 111

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG    +  +R  GA I   NG S+G + FL++ +       QG  R+G+  AYL   H 
Sbjct: 112 GGTSAYFGDLRPRGAPIRD-NGFSEGAVNFLRLFDTLIDVTKQGATRRGSFAAYLPIDHP 170

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DVEEFL +R     D     ++     + D +++ +                        
Sbjct: 171 DVEEFLAIR----SDGNPIQNLFFGVAVSDAWLEAMRAGDA------------------- 207

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                                      +W K+L    E G P++ F D     +P+ +  
Sbjct: 208 -----------------------DKRRVWAKVLQKRTEVGLPYVLFTDNATRGAPEVYRD 244

Query: 578 V---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
               V SSNLCTEI L  + +E+ VC+L S+NL  + A    D  +L      AV     
Sbjct: 245 RGLVVRSSNLCTEIMLPVAEDESFVCDLASMNLATYDAWRATDAVRLLVFFLDAVMTEFI 304

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
               +    E+A++    HRA+G+G++G+ S L    +P+ S +A  +  +    +   A
Sbjct: 305 DKSASLPFFERARRFAVRHRALGVGVVGYHSLLQARRVPFGSLQAALLNRQIFRELREAA 364

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
             AS ELA+  G  +  +G+                                        
Sbjct: 365 DDASAELARRYGEPALCEGT---------------------------------------- 384

Query: 755 TIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+  +A+APT + A I G VS S++P   N YV+       T  N  L   L++R
Sbjct: 385 --GRRNTTLLAVAPTTSSAFILGGVSPSVEPLRSNYYVRDLAKAVVTYRNPALREVLRER 442

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                A+   +  HDGS+ +++ + D+ K + AT  EI P  +I  A+ RQ +IDQ QSL
Sbjct: 443 GHDTPAVWRSILAHDGSVQHLDCLSDEEKGVFATFSEISPRDIIVQAAGRQAFIDQGQSL 502

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           NL +  E   + L+ +  +A   GLK+ YY  + SA     
Sbjct: 503 NLMIHPETPARDLNALVLEAHARGLKSLYYQHAISAAQALN 543


>gi|328945481|gb|EGG39632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1087]
          Length = 719

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 161/715 (22%), Positives = 280/715 (39%), Gaps = 84/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +   +  E     IEE    +   +      +  L   +  + 
Sbjct: 32  KEALEAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFIHAQ- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITEKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I   + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+E
Sbjct: 328 LVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSNLCSE 384

Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +          +IRT  R L  V
Sbjct: 385 ILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y S EAVE        +++  
Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +       
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFVPSA--ED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|322385109|ref|ZP_08058756.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           cristatus ATCC 51100]
 gi|321270733|gb|EFX53646.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           cristatus ATCC 51100]
          Length = 719

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 162/715 (22%), Positives = 287/715 (40%), Gaps = 84/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  + +  +   +  E     IEE    +   +      +  L+  +  + 
Sbjct: 32  KEALEAFFKENVEPSTMKFASI-TEKIQYLIEENYLEKEFIQLYSPEYIEELSAFIHAQ- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  +   + +    +    E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEDMYLFSPYSIEREYGV-PFAYIDITEKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+E
Sbjct: 328 LVANPKITKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPI--DGKIIMSNLCSE 384

Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +          +IRT  R L  V
Sbjct: 385 ILQVQEPSLLNDAQEYIHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y S EAVE        +++  
Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPTAA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|18653875|ref|NP_570809.1| large ribonucleotide reductase [Macacine herpesvirus 5]
 gi|4494973|gb|AAD21395.1| large ribonucleotide reductase [Macaca mulatta rhadinovirus 17577]
          Length = 788

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 170/753 (22%), Positives = 291/753 (38%), Gaps = 90/753 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLH 308
            +Y   + E          S  +  L  L  D K  + +       YL     YD Y L 
Sbjct: 75  RDYLAVFGERLSDEVRAFMSKHEAALDGLLQDFKQSKAYTNFVNCGYLSAVRFYDTYVLR 134

Query: 309 INGS--RIEMPQAFFMRVAMGL--------ALKETEKEKRAVEF-----------YNLLS 347
             GS    E     FMRVA+ +         L+ET +     E            ++ +S
Sbjct: 135 TQGSSPIFESVAQMFMRVAVFVACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYIS 194

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSGGLGNDWT 405
           S    C+TP L ++G R  QLSSCF+           +    +E + L     G+G D +
Sbjct: 195 SQIVCCATPVLRSAGLRGGQLSSCFILKPSMATEDKTLKALHEEMSPLLASKSGVGIDVS 254

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
                         + + +   LK+ N      N    R     AY+E WH  + +FL+ 
Sbjct: 255 SFA-----------EHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNA 303

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYE 523
           +     +  R H++     +P+LF +    N    W LF+P+   +L  LYG EFEI Y 
Sbjct: 304 KMPENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEIEYN 361

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582
                      K    +   ++   ++  + +TG P++  K+  N     +  G  ++ S
Sbjct: 362 RLVAA-----GKHSSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCS 416

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-------------YDKLASTIRTAV 629
           NLC EI       + +VCNL +I+L      ++ +             ++ L   +  AV
Sbjct: 417 NLCAEIVQQP-EGQASVCNLANISLPKCLRPHRGESGVEPGKGDVTFGFELLDDAVEAAV 475

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +++  I       E  ++     R++G+G+ G       L   Y   E+ ++  E  + 
Sbjct: 476 IIVNACILGGTAPTESVRRG-QEERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQA 534

Query: 690 ISFHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           + F A+  S E  L  E   +  ++ S   QGVF   +   +      L         W+
Sbjct: 535 MYFTAVQTSHEIVLLGEGTPFRGWERSRLAQGVFHWQTWDGVKPSHPPLE-------RWE 587

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L + +   G+ NS  +A+ PTA  + + G +++  P + N+  K     +    N    
Sbjct: 588 QLGRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFF 647

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             +K  DL        ++ + G + +      D  KI  TAF+  P+  +E A  R  ++
Sbjct: 648 KRVKPGDLRT------VRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFV 701

Query: 868 DQAQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923
           DQ+QSLN +L E   +    +  +    + +GLKT  YY R      ++K T       L
Sbjct: 702 DQSQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCR------IQKQTKLNALQCL 755

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTE--CEVCQ 954
           + V   + +S             +    C  CQ
Sbjct: 756 DQVVGDNISSEGAESNCVQKADGERTKVCLACQ 788


>gi|254233681|ref|ZP_04927006.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis C]
 gi|124599210|gb|EAY58314.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE
           [Mycobacterium tuberculosis C]
          Length = 732

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 162/672 (24%), Positives = 273/672 (40%), Gaps = 72/672 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 71  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686

Query: 885 LDFIYRQAWLMG 896
           ++     AW  G
Sbjct: 687 VNKAQIYAWRNG 698


>gi|297539886|ref|YP_003675655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera sp. 301]
 gi|297259233|gb|ADI31078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera sp. 301]
          Length = 721

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 132/624 (21%), Positives = 256/624 (41%), Gaps = 56/624 (8%)

Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  ET  EKR    E +        + +     N+G    +      +C ++
Sbjct: 51  YARVARALADVETTDEKRAEWHEKFLWALRRGAIPAGRITSNAGALEHKPATSTINCTVS 110

Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            V  D +  I G + E  +  K   G+G +++ +R  GA + G    + G + F+ + + 
Sbjct: 111 GVISDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDK 170

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA  A  +  H DV +F+  ++    +  R    N +  I   FM+ V
Sbjct: 171 MCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKR----ENGRLRQFNLSCLITKEFMEAV 226

Query: 494 TQNAGWTLFSPDE----------VSDLHDLYGKEF--EIAYENYERQADRGEI--KVFRK 539
             +A W L  P             +DL  +  +E+  +  Y       D G++  +V++ 
Sbjct: 227 KADAEWKLAFPVTEKEAIIDGLNTNDLAQVVWREWPIKGKYLTKLDGVDAGKVACRVYKT 286

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LW  +++  ++   P     D  N  +       + ++N C E  L         
Sbjct: 287 IKARRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRTTNPCGEQPLPPY----GA 342

Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           C LGS+NL             FD+ +    +    R+LDNV++IN   +++ +      R
Sbjct: 343 CLLGSVNLTRFVKKPFTDEAYFDWKEYREVVAIFTRMLDNVVEINGLPLQEQRDEIMRKR 402

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG- 713
             G+G +G  S+L ++ + Y   E+++  DE    ++    +  V+LA+E+G        
Sbjct: 403 RHGMGYLGLGSSLTMMKLKYGEEESLKFTDEVTRVMAEEGWNTGVQLAEEKGPAPIMDEK 462

Query: 714 ------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCM 764
                  L  +     D I +  ++  ++ + + SR      + L+ ++   G+R ++  
Sbjct: 463 FEVTADMLAKRPEMAADGIKVGQKIAGKVLLGKYSRYMQQFPEGLRNQIAAKGVRFTHHS 522

Query: 765 AIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           +IAPT TI+       S  I+PS+ + Y ++ +               ++ D++   +++
Sbjct: 523 SIAPTGTISLSLANNASNGIEPSFAHHYARNVI--------REGKKSKEKVDVFSYELLA 574

Query: 823 DLKYHDGSIGNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
             +  + +       P++ L      +  I     ++  +  QKWID + S  + +  + 
Sbjct: 575 YRELINPNAMPFSDKPEEQLPDYFLDSSTIMAKAHVDIQAASQKWIDSSISKTINVPTDY 634

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904
             +    IY  A+  GLK     R
Sbjct: 635 DFEDFKNIYLYAYDKGLKGCTTFR 658


>gi|90410606|ref|ZP_01218622.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK]
 gi|90328847|gb|EAS45131.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK]
          Length = 716

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 146/658 (22%), Positives = 265/658 (40%), Gaps = 62/658 (9%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLA--LKETEKEKRAVEFYNL 345
           D A++   ++I   +Y L         E     F RVA  LA   K+  KE    EF   
Sbjct: 15  DIAYQSTSMEIWNSKYRLKTKHGIAIDETVDDTFKRVARALADLEKDKVKEHWYNEFLWA 74

Query: 346 LSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGL 400
           L +     +     N+G    +      +C ++ T+ D +  I G + E  +  K   G+
Sbjct: 75  LRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGI 133

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G D++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H D+ 
Sbjct: 134 GYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDII 193

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-------DLHDL 513
           +F+  ++    +  R    N +  I + F++ V  +  W+L  P           DLH  
Sbjct: 194 DFIRAKR----EDGRLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDKLDLHTD 249

Query: 514 YGKEFEIAYENY---ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
               +          E +  R   K++R + A  LW  ++T  ++   P     D  N  
Sbjct: 250 SSIMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQM 309

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625
           +       + ++N C E  L         C LGSINL     +       FD+D     +
Sbjct: 310 NNNWFCEEIRATNPCGEQPLPPY----GACLLGSINLTKFVRDPFTNTAAFDWDGFRRVV 365

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
               R+LDNV++IN   +EK +      R  G+G +G  S   +L   Y S  ++   ++
Sbjct: 366 AIFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLTHKYGSAASIAFTEQ 425

Query: 686 SMEFISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAM 738
             + ++      ++ LA+E+GA              +  +     D I +  +++ ++  
Sbjct: 426 VAQELAISGWKEALSLAKEKGAAPVMDQVFTITAKMMRQRPEMADDGIKVGDKIKGKVLH 485

Query: 739 NRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790
            + SR          EL + + T+G R ++  +IAPT TI+       S  I+PS+ + Y
Sbjct: 486 AKYSRYMQQVAEIEPELIEALSTVGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 545

Query: 791 VKSNM-SGDFTV--VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            ++ + +G  T   V+ +    L  R+L +   +        S     ++P+       T
Sbjct: 546 SRNVIVTGKKTKESVDVYSFELLAYRELVNSKAMPY------STDEETQLPE----YFIT 595

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           A +I P   ++  +  Q+WID + S    +  +   +    IY  A+  GLK     R
Sbjct: 596 ADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQDIYMNAYDKGLKGCTTFR 653


>gi|298253144|ref|ZP_06976936.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1]
 gi|297532539|gb|EFH71425.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1]
          Length = 741

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 167/736 (22%), Positives = 286/736 (38%), Gaps = 82/736 (11%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-------PEYFCRYI 260
             I    +Y  + A   L    + +     ++ +K         +        E     I
Sbjct: 30  ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFASTRERLNYLI 89

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +       +     D  L       +        +LG    Y  Y L     +  +    
Sbjct: 90  DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGKQYLENFA 149

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379
               A+ L L +   EK A  + + + +  F  +TPT  N G     +  SCFL  + D+
Sbjct: 150 QRAAAVALELAD-GDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 208

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    N
Sbjct: 209 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 268

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +    
Sbjct: 269 QLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 328

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558
            LFSP    D+   YGK F                ++ +K I A   +  +  + FE+G+
Sbjct: 329 ALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTIAEIQFESGY 385

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSIN 606
           P+I F+D  N  +P    G +  SNLC+EI               S       CNLGS+N
Sbjct: 386 PYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLN 443

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +      N      L +++  AVR L +V +  +  ++   ++ N    AIGLG M    
Sbjct: 444 IAKAMDGN------LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHG 497

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724
            L   H+ Y S EA++  D     I++HA  AS  LA ERG A+++FK S + +     +
Sbjct: 498 FLAREHMQYGSEEALDFTDMYFMTIAYHAYKASHALAVERGHAFANFKTSAYAKPAGKGN 557

Query: 725 SIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
                               ++     +   +   W++L+  + + G+ N    A+ PT 
Sbjct: 558 YFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILSDGIYNEYLQAVPPTG 617

Query: 771 TIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + ++     G      +++ N+                    
Sbjct: 618 SISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM------------------ 659

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
                        +    A+EI    +I++ +   + +DQ  SL L+  +  + + L+  
Sbjct: 660 -------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKA 706

Query: 889 YRQAWLMGLKTTYYLR 904
              AW  G+KT YY+R
Sbjct: 707 QIYAWRKGIKTLYYIR 722


>gi|313884788|ref|ZP_07818542.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619987|gb|EFR31422.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 725

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 159/714 (22%), Positives = 294/714 (41%), Gaps = 80/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E     + +           L  +       + ++A  ++     +D  ++   ++   
Sbjct: 36  KEAARAFFLEHVNPNTVFFYTLDEKLDYLIEHDYIEAEFIN----KYDRAFIKELMQSTY 91

Query: 290 DFAF---EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           D+ F    ++G    Y++Y L  N     +E  +    R+              A +  +
Sbjct: 92  DYKFRFKSFMGAHKFYNQYALKTNDGKRYLERFED---RIVFNALYLANGDPDFARKLRD 148

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            L +  F  +TPT  N+   R  ++ SCFL  + DD+  I  ++     L+K  GG+G +
Sbjct: 149 ELITQRFQPATPTFLNAGRKRRGEMVSCFLIEISDDMNAIGRSINSALQLSKRGGGVGIN 208

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I      + GV+P +K+  D+    NQ G+R GA   YL  +H DV  FL
Sbjct: 209 LSNLREEGAPIKKVENAASGVVPVMKLFEDSFSYANQLGQRNGAGVVYLSVFHPDVVRFL 268

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F + V +NA   LFSP +V   +           E
Sbjct: 269 STKKENADEKIRVKTLSLGLTVPDKFYELVAENADMFLFSPYDVEREYGQAFAYVN-ITE 327

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            YE       I+ ++ + A  L  ++  +  E+G+P+I   D  N  +P    G +  SN
Sbjct: 328 EYENMVHNPNIRKYK-VKARELENEISKLQQESGYPYIINIDTANEANPI--DGRIVMSN 384

Query: 584 LCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           LC+EI                 +    S NL +    N       A +I  AVR L  V 
Sbjct: 385 LCSEILQVQKPSKIRDDQSYEEMGMDISCNLGSTNVVNMVQSPNFAQSIDVAVRALTFVT 444

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  +   +   K  N     IGLG MG  +   +  I Y S E++E+ +     ++++ +
Sbjct: 445 DHTSIDAVPSVKNGNELQHTIGLGAMGLHTLFAINQIDYGSDESLELTEAYFYAVNYYTL 504

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDE 748
            +S ++AQER  ++ +F  S +  G++    I    E++ +        ++  +   W  
Sbjct: 505 LSSNQIAQERGQSFYNFDKSDYASGLYFDRYIDQPFEIQSDKVKEIMKGIHLPTAEDWQA 564

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           LK++V+  G+ ++   AIAPT +I+ +   S S+ P  + +  +    +G       +L 
Sbjct: 565 LKEKVQAHGLYHAYRQAIAPTGSISYVNETSASLHPIIRLIEERQEKKTGKTYYPAPYLS 624

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           N+                                   + + ++ID   +I+  +  QK I
Sbjct: 625 NDTI-------------------------------DYYKSVYDIDMRLVIDVYAAAQKHI 653

Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  S+ L++                ++ + + L+ +   AW  G+K+ YY+R+
Sbjct: 654 DQGMSMTLFMRSEIPSGLYPWKKADDNKLTTRDLNILRNYAWNQGIKSIYYVRT 707


>gi|152985283|ref|YP_001351609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudomonas aeruginosa PA7]
 gi|150960441|gb|ABR82466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pseudomonas aeruginosa PA7]
          Length = 714

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 143/625 (22%), Positives = 250/625 (40%), Gaps = 62/625 (9%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  +E     F   L +     +   + N+G    +      +C ++
Sbjct: 48  WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 106

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 107 GTIQDSMDDILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 166

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV EF+  ++    +  R    N +  I D FM+ V
Sbjct: 167 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 222

Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            Q+A W L  P  V         D + +  +E+       +R       KV+ ++ A  L
Sbjct: 223 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPTQDNYVQRADGLVACKVYGQVRARHL 282

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 338

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+D+    +R   R+LDNV++IN   +++ ++     R  G+G 
Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLQQQRQEILGKRRHGMGF 398

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
            L  +     D   +   +R  +   + SR          EL + +   G R ++  +IA
Sbjct: 459 MLRKRPEMAADGYKVGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 518

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++            L+ E ++     E    +L 
Sbjct: 519 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 566

Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
            +   +    +    D    L     TA  + P   ++  +  QKW+D + S    +  +
Sbjct: 567 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 626

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +    IYR AW  GLK     R
Sbjct: 627 YPFEDFKDIYRYAWHQGLKGCTTFR 651


>gi|222831854|gb|EEE70331.1| predicted protein [Populus trichocarpa]
          Length = 280

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/250 (38%), Positives = 152/250 (60%), Gaps = 10/250 (4%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +  ++I+RNG V SF+P+KI+ A+ KAF+AV G   + S RV++I++ LT+  V  L++ 
Sbjct: 36  QDYKLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRS 95

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP--K 144
             +    HIED+QD VE +LM+SG H++ R YVLYRE+R+  RA  +             
Sbjct: 96  RPNGGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERAQANAQAVARVQEAGVS 155

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203
             +  D+G     +   L  +++ ACSGL + VS++ +L ET KN+YDG+  + +  + I
Sbjct: 156 FNVT-DNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAI 214

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++RTLIEK+P Y++VTAR LL  +R+E+L        + T  EM   Y EYF ++I  G
Sbjct: 215 LAARTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARG 268

Query: 264 VKARLLHESM 273
           ++A LL E +
Sbjct: 269 IEAELLDEKL 278


>gi|283782687|ref|YP_003373441.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella
           vaginalis 409-05]
 gi|283441659|gb|ADB14125.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella
           vaginalis 409-05]
          Length = 741

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 165/736 (22%), Positives = 285/736 (38%), Gaps = 82/736 (11%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-------PEYFCRYI 260
             I    +Y  + A   L    + +     ++ +K         +        E     I
Sbjct: 30  ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFASTRERLNYLI 89

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +       +     D  L       +        +LG    Y  Y L     +  +    
Sbjct: 90  DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGKQYLENFA 149

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379
               A+ L L +   EK A  + + + +  F  +TPT  N G     +  SCFL  + D+
Sbjct: 150 QRAAAVALELAD-GDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 208

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+  D+    N
Sbjct: 209 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 268

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +   +    
Sbjct: 269 QLGARQGAGAVYISAHHPDIMRFLDAKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 328

Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558
            LFSP    D+   YGK F                ++ +K I A   +  +  + FE+G+
Sbjct: 329 ALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTIAEIQFESGY 385

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSIN 606
           P+I F+D  N  +P    G +  SNLC+EI               S       CNLGS+N
Sbjct: 386 PYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLN 443

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           +             L +++  AVR L +V +  +  ++   ++ N    AIGLG M    
Sbjct: 444 IAKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHG 497

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724
            L   H+ Y S EA++  D     +++HA  AS  LA ERG A+++FK S + +     +
Sbjct: 498 FLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFANFKTSAYAKPAGKGN 557

Query: 725 SIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
                               ++     +   +   W++L+  + + G+ N    A+ PT 
Sbjct: 558 YFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILSDGIYNEYLQAVPPTG 617

Query: 771 TIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           +I+ I   + SI P    + ++     G      +++ N+                    
Sbjct: 618 SISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM------------------ 659

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
                        +    A+EI    +I++ +   + +DQ  SL L+  +  + + L+  
Sbjct: 660 -------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKA 706

Query: 889 YRQAWLMGLKTTYYLR 904
              AW  G+KT YY+R
Sbjct: 707 QIYAWRKGIKTLYYIR 722


>gi|325688331|gb|EGD30350.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK72]
          Length = 719

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|125717618|ref|YP_001034751.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK36]
 gi|125497535|gb|ABN44201.1| Ribonucleoside-diphosphate reductase, putative [Streptococcus
           sanguinis SK36]
          Length = 719

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 164/719 (22%), Positives = 282/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIP-- 553

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
           S   W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 554 SPEDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|304310470|ref|YP_003810068.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma
           proteobacterium HdN1]
 gi|301796203|emb|CBL44409.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma
           proteobacterium HdN1]
          Length = 704

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 126/643 (19%), Positives = 255/643 (39%), Gaps = 56/643 (8%)

Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTL 358
                   +G  + +     + R+A  L   E  K+K+    E +        + +   +
Sbjct: 15  QKYRLQTSDGEAVDQTMDDTWRRIARALCEVEKGKKKQEEWFENFFWALKNGAIPAGRII 74

Query: 359 FNS----GTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
            N+            +C ++ T+ D +  I     E  +  K   G+G +++ +R  GA+
Sbjct: 75  SNAGAQAYKSDTSTINCTVSGTIHDTMNDILAKNFEAGLTLKAGCGIGYEFSTLRPRGAY 134

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           + G   K+ G + F+ + + T   V+  G R+GA  A  +  H DV +F+ +++    + 
Sbjct: 135 VSGAGAKTSGPLSFMDIFDRTCFTVSSAGGRRGAQMATFDVSHPDVLDFIRVKR----EN 190

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV----------SDLHDLYGKEFEIAYE 523
            R    N +  + + F+  V  +  W L  P +            D   +  +E+     
Sbjct: 191 GRLRQFNLSLLVSEKFIDAVRNDQQWALVFPIKTNSPDAQKLNLQDPEQVEWREWPSNDG 250

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      +V+RK++A  +W  +++  ++   P     D  N  +       + ++N
Sbjct: 251 YITNDCGEVACRVYRKVAARKIWHVIMSSTYDFAEPGFILIDKVNQMNNNWFCENIRATN 310

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDI 638
            C E  L         C LGSINL    +N       FD++K    +    R+LDNV+++
Sbjct: 311 PCGEQPLPPY----GSCLLGSINLTRFISNPFSVDAQFDWEKFRRMVSVFSRLLDNVVEV 366

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +          R  G+G +G  SA+ +L I Y S E+VE  ++    ++      +
Sbjct: 367 NGLPLNHQAHEIQYKRRHGMGFLGLGSAMTMLRIKYGSKESVEFTEQIAREMAMTGWKTA 426

Query: 699 VELAQERGAYSSFKG----SLWDQGVFPI---DSIGLLAEVRDELAMNRTSRLPW----- 746
           +ELA+E+G     +     +       P    D   +  +++ ++   + SR        
Sbjct: 427 LELAKEKGPAPIMEDEFEVTPSMLSKRPEMVADGYRVGDKIKGKVLHAKYSRYMQRIAEQ 486

Query: 747 -DELKKRVKTIGMRNSNCMAIAPTATIANICGV--SQSIDPSYQNLYVKSNMSGDFTVVN 803
              L   +  +G R ++  +IAPT TI+   G   S  I+P++ + Y+++ +        
Sbjct: 487 DPALVDELAKVGARYTHHSSIAPTGTISLSIGNNASNGIEPTFAHHYIRNVIKEG----- 541

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP-DDLKKIHATAFEIDPMWLIESASR 862
                  ++ D++   +++     +         P + L     +  ++ P   ++  + 
Sbjct: 542 ---KKSKEKMDVFSFELLAYRALVNPKAMPFSENPAEKLPDYFTSTDDVSPEQHVDIQAA 598

Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
            QKW+D + S  + +  + S  +   IY  A+  GLK     R
Sbjct: 599 AQKWVDSSISKTINVPTDISYDRFKDIYLYAYDSGLKGCTTFR 641


>gi|57641671|ref|YP_184149.1| ribonucleotide-diphosphate reductase subunit alpha [Thermococcus
            kodakarensis KOD1]
 gi|57159995|dbj|BAD85925.1| ribonucleoside-diphosphate reductase [Thermococcus kodakarensis KOD1]
          Length = 1746

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 175/385 (45%), Gaps = 21/385 (5%)

Query: 565  DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYD 619
            +     +  +H   + +  +           E   CNL SINL             FD+D
Sbjct: 1274 EIVYDFTVPEHHSYISNGFMSHNCGEEP-LYEYESCNLASINLAKFVKYDDEGKPYFDWD 1332

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            + A  I+   + LDN ID+N   + +  ++    R IG+G+MG   AL  L IPY S E 
Sbjct: 1333 EYAYVIQKVAKYLDNAIDVNKFPLPEIDRNTKLTRRIGVGMMGLADALFKLGIPYNSKEG 1392

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +   ++ E+++F+A   SVE A+ERG +  ++ + +  G  P++               
Sbjct: 1393 FDFMRKATEYLTFYAYKRSVEAAKERGPFPLYEKTRYKDGELPVE----------GFYHR 1442

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                LPWDEL + +K  G+RN       PT +++ I   S  I+P +  +Y KS   G+F
Sbjct: 1443 EIWNLPWDELVEEIKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 1502

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
              V+     ELK+R LW + ++  +  + GS+  +E IP+D++++  TA +I  +  I +
Sbjct: 1503 YYVDPVFEAELKKRGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTAMDIHWLDHILA 1562

Query: 860  ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKS 914
             +  Q W+  + S  + + ++ + + +   Y  A+ +G K     R  S +    SVE  
Sbjct: 1563 QANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGVTVYRDGSLSVQVYSVEGE 1622

Query: 915  TLKGVDGKLNAVPVTDPNSSTHSLG 939
              K V  K +   V    +   +  
Sbjct: 1623 KKKRVPAKPSDYAVEKLKTIVEAEP 1647



 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 146/433 (33%), Gaps = 76/433 (17%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A + V        +R + ++  +  + V R +     
Sbjct: 5   KVMKRDGRIVPFDKERIRWAIQRAMLEV-------GVRDEKLLNRVVRR-VVRRVNELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I +IE+IQD VE  LM++G   + + Y+LYR++++++R  +    +            
Sbjct: 57  GQIPNIENIQDIVELELMRAGLFDVAKAYILYRKKKAEIREEKKKILNKDK--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  L    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SLNALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           I+ E      + R L E++   +L  +          +    + +               
Sbjct: 129 IKNEKGEIIESPRELFERVA--ILAVIPDILYDERVFDKNGGHEQDVSAIER-------- 178

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
                  +L          R    ++   + L + Y       ++++P    ++  M   
Sbjct: 179 ----YRENLDEYDGKFSIGRFRLNKWH-FERLLNLYRELAEKGQMKLPIDEVLK--MLEN 231

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
                 E    E++ L++  +FM +TP L NSG     LS+CF+  + DD+  I  A  +
Sbjct: 232 GAFDNYEDEIEEYFRLMTGQYFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHD 291

Query: 390 NAMLAKYSGGL---GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            AM+ K  GG                HI       +      +  +          +   
Sbjct: 292 VAMIQKAGGGCIDGNAKIIFENDGEEHIMTMAEMYERYKDLGEFYDPEYNRWGINVEEVP 351

Query: 447 AVCAYLETWHIDV 459
                 +    ++
Sbjct: 352 VYVKSFDPSTKEI 364



 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 83/215 (38%), Gaps = 32/215 (14%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T  D     +           +    G +++ +R  G  +  T G + G + F+ + +  
Sbjct: 731 TFYDLTVERYQNYLAGENGMVFVHNTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAV 790

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +  + QGG R+GA    LE WH D+E+F+  + KNTG +     +++   W  + F + +
Sbjct: 791 SDVIKQGGVRRGANMGILEVWHPDIEKFIHAKEKNTGTNVLSNFNISVGLW--EDFWEAL 848

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   + L +P                              +  ++I   +L+ ++  M 
Sbjct: 849 KEGKRYPLINPRT---------------------------GEKVKEIDPKSLFEELAYMA 881

Query: 554 FETGHPWITFKDPCNIRSPQQH--VGVVHSSNLCT 586
           +    P + F D  N R+  +      + ++N C 
Sbjct: 882 WAKADPGVVFFDVINRRNVLEPAKGEKIRATNPCV 916


>gi|327468919|gb|EGF14391.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK330]
          Length = 719

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|94968153|ref|YP_590201.1| vitamin B12-dependent ribonucleotide reductase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550203|gb|ABF40127.1| Ribonucleoside-diphosphate reductase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1004

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 125/636 (19%), Positives = 229/636 (36%), Gaps = 55/636 (8%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             ++F+         G   PQ S+CF+ +V D L  I    +   ML K+  G G + +P
Sbjct: 170 WHWNFLKQQAEFGPVGYTRPQCSACFINSVHDSLDSILTLAKTEGMLFKWGSGTGTNLSP 229

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDL 465
           +R     + G  G + G + F++  +  A  +  GGK R+ A    L   H D+ EF+D 
Sbjct: 230 LRSSNEQLSG-GGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNIEHPDIVEFIDC 288

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +                   PD         +     + +    + D +        +  
Sbjct: 289 KAKEEAKAWALMQQGYDGSSPD-----AEAYSSIFFQNANNSVRVTDDFMYAVVRDADFS 343

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            +    G+  V +   A  L  K+    ++ G P + +    N     ++   +++SN C
Sbjct: 344 TKAVKSGD--VVKTFKARWLLSKISEATWQCGDPGMQYDTTVNRWHTSKNTARINASNPC 401

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           +E        + + CNL S+NL+    N  FD           +   + ++D   +  E 
Sbjct: 402 SEYMF----LDDSACNLASLNLMKFAPNGTFDVAAYRHACAITITAQEILVDNAGYPTES 457

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K++H +R +GLG     + L    +PY S    + A      +   A   S ++A+  
Sbjct: 458 IMKNSHDYRPLGLGYANLGALLMAAGLPYDSDAGRDYAACVTAIMCGEAYLQSSKIAELG 517

Query: 706 GAYSS---------FKGS----LWDQGVFPIDSIGLL-------AEVRDELAMNRTSRLP 745
              +            GS     +      +D I +         +      +   ++  
Sbjct: 518 QPLTPATPITQSVEITGSACPGWYVNREPFLDVIRMHRASVNNINQKNVPAPVFEAAKAT 577

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVN 803
           WDE  +  +  G RNS    +APT TI  +    +  I+P    + Y K    G   +VN
Sbjct: 578 WDEALQHGERHGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGMIKIVN 637

Query: 804 SFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAF-------EIDPM 854
           + +   L +     +   + + Y D  G+I     I D+   +   +F        I  M
Sbjct: 638 NTVPAALFKLGYTSDQANATVSYIDATGTIEGAPHIKDEHLAVFDCSFKPAKGTRTISYM 697

Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             ++  +  Q +I  A S  + L  + +   +   Y Q+W +GLK     R  S      
Sbjct: 698 GHVKMMAATQPFISGAISKTVNLPKDATIDDIMEAYIQSWKLGLKAVAIYRDGS------ 751

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
                    LNA   +  +    +   P +  S+ +
Sbjct: 752 ----KGGQPLNASGTSTTDKLKKAEAAPVASESEDD 783


>gi|222153354|ref|YP_002562531.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           uberis 0140J]
 gi|222114167|emb|CAR42680.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus uberis 0140J]
          Length = 719

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 165/716 (23%), Positives = 288/716 (40%), Gaps = 86/716 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +       + +++  + +   DF +  LA  +K E+
Sbjct: 32  KEALDAFFKENVIPNTKAFPSVTEKINFLLEHDYIESEFIKKYTFDF-IEELAALIKEEK 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +   M  A+  A      E  A +    + 
Sbjct: 91  FQFKSFMAAYKFYQQYALKTNDGEYYLESLEDRVMFNALYFA---DGNEDLAKDLAIEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   QN    LFSP +V   + +    +    E Y+
Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARQNEDMYLFSPYDVEREYGVA-FNYIDITEKYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 +I   + I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 327 ELVANPKITKTK-IRARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLCS 383

Query: 587 EITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI                       CNLGS N+L    +          +I+   R L  
Sbjct: 384 EILQVQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D      +   K  N      GLG MG  S L   HI Y SPE+VE  D     +++ 
Sbjct: 439 VTDSSQIEAVPTVKNGNQQAHTFGLGAMGLHSFLAKNHIEYGSPESVEFTDIYFMLMNYW 498

Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744
            +  S  +A+ER   +  F+ S +  G +    +         L+ E+  +  + + S  
Sbjct: 499 TLVESNNIARERQTTFVGFEKSKYADGSYFDKYVTGQFVPKSDLVKELFKDHFIPQAS-- 556

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803
            W+ L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G      
Sbjct: 557 DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEGRQEKKIGKIYYP- 615

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                                            +  D    + +A+++D   +I+  +  
Sbjct: 616 ------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAAA 645

Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 646 TQHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|254243048|ref|ZP_04936370.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192]
 gi|126196426|gb|EAZ60489.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192]
          Length = 734

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 146/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  +E     F   L +     +   + N+G    +      +C ++
Sbjct: 68  WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV EF+  ++    +  R    N +  I D FM+ V
Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242

Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            Q+A W L  P  V         D + L  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNALVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
            L  +     D       +R  +   + SR          EL + +   G R ++  +IA
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++            L+ E ++     E    +L 
Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 586

Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
            +   +    +    D    L     TA  + P   ++  +  QKW+D + S    +  +
Sbjct: 587 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 646

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +    IYR AW  GLK     R
Sbjct: 647 YPFEDFKDIYRYAWHQGLKGCTTFR 671


>gi|307706627|ref|ZP_07643434.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK321]
 gi|307618082|gb|EFN97242.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK321]
          Length = 719

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 159/715 (22%), Positives = 282/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  LA  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    I          + E+  ++ +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYITGEFVPKSDRVKELFKDVFIPSAA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|116053647|ref|YP_793974.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894600|ref|YP_002443470.1| NrdJa [Pseudomonas aeruginosa LESB58]
 gi|254237823|ref|ZP_04931146.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719]
 gi|115588868|gb|ABJ14883.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169754|gb|EAZ55265.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719]
 gi|218774829|emb|CAW30647.1| NrdJa [Pseudomonas aeruginosa LESB58]
          Length = 734

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  +E     F   L +     +   + N+G    +      +C ++
Sbjct: 68  WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV EF+  ++    +  R    N +  I D FM+ V
Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242

Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            Q+A W L  P  V         D + +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
            L  +     D       +R  +   + SR          EL + +   G R ++  +IA
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++            L+ E ++     E    +L 
Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 586

Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
            +   +    +    D    L     TA  + P   ++  +  QKW+D + S    +  +
Sbjct: 587 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 646

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +    IYR AW  GLK     R
Sbjct: 647 YPFEDFKDIYRYAWHQGLKGCTTFR 671


>gi|295397109|ref|ZP_06807220.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
 gi|294974651|gb|EFG50367.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
          Length = 732

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 165/723 (22%), Positives = 291/723 (40%), Gaps = 87/723 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES----MMDFDLVYLANDL 285
           +++     ++  +A   E       +F    E+              +  +   ++ +  
Sbjct: 31  KKIQLNKDREAVRAYFLEYVNPNTVFFHTLEEKLQYLVDNDYIEEGFLNKYSFNFIQSLF 90

Query: 286 KYERDFAF---EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340
            +     F    ++G    Y +Y L  N ++  +E  +    R+A          E  A 
Sbjct: 91  DHLYSHKFRFKSFMGAYKFYTQYALKTNDNKRFLERYED---RIAFTALYLADGDEDLAW 147

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
                        +TPT  N+G +   ++ SCFL  V D++  I  A+  +  L+K  GG
Sbjct: 148 HIAEEHIEHRLQMATPTFLNAGKKRRGEMVSCFLIDVQDNMESIGRAVNSSLQLSKRGGG 207

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G + + +R  GA I G      GV+P +K+  D     NQ G+R GA   YL  +H DV
Sbjct: 208 VGVNLSNLREAGAAIKGIENAGSGVVPVMKLLEDAFSYANQLGQRNGAGVVYLNAFHPDV 267

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EFL  +K   D++ R   ++    +PD + + +  N    LFSP +V  ++      + 
Sbjct: 268 YEFLSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFSPYDVERIYGE-PFGYV 326

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              E+YE      EIK ++ I+A  L +++  +  E+G+P+I   D  N        G +
Sbjct: 327 DITEHYEDMVANKEIKKYK-INARELEQEISRLQQESGYPYIMNVDTANK--ENPINGTI 383

Query: 580 HSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
             SNLC+EI         N       V    S NL +         +     + TAVR L
Sbjct: 384 TMSNLCSEIMQVQKPSTLNEDLTYKEVGLDISCNLASTNITEMLKTNDFEKAVDTAVRAL 443

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+     +   ++ N  + +IGLG MG  +AL    I Y S EA+E+ D     + 
Sbjct: 444 TAVSDMTSIQAVPSVERGNSAYNSIGLGAMGLHTALATNQIHYGSAEALELTDAYFMALR 503

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----------GLLAEVRDELAMN 739
           ++A+  S ++A+ER  ++  F  S +  G +  +               +A++ D + + 
Sbjct: 504 YYALKTSNQIAKERGESFFEFDQSAYADGSYIRERYIDNQVPFVFHSEKVAKLFDHIHIP 563

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
                 W  L + +   G+ N+  + +APT +I+ I   S SI P    +  +     G 
Sbjct: 564 TP--DDWAALNQAIMADGLYNAYLLTVAPTGSISYINEASSSIHPIVHLIENRQETNIGS 621

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 +L N+                    +I             + +A+E D   +I+
Sbjct: 622 MFYPAPYLDND--------------------TIQ-----------YYKSAYETDMRQVID 650

Query: 859 SASRRQKWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYY 902
           + +  QK IDQ  SL L++                   + + L+ +   AW  G+K+ YY
Sbjct: 651 TYATAQKHIDQGMSLTLFMQSTIPRGLYEWKNGNTDKMTTRDLNRLRNYAWAKGIKSIYY 710

Query: 903 LRS 905
           +R+
Sbjct: 711 VRT 713


>gi|325694008|gb|EGD35926.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK150]
          Length = 719

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVLNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|308183793|ref|YP_003927925.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047719|gb|ADO00262.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 636

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 166/701 (23%), Positives = 275/701 (39%), Gaps = 104/701 (14%)

Query: 289 RDFAF---EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           RD  F    +LG    Y +Y +  N  +  + + F  RV           E+ A +  + 
Sbjct: 2   RDHHFRFRSFLGAYKFYTQYAMKTNDGQQFL-EDFVDRVVFNALYLANGDEQLANDIADE 60

Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L S  +  +TPT  N+G +   ++ SCFL  V D +  I   +     L++  GG+G + 
Sbjct: 61  LISQRYQPATPTFLNAGKKRRGEMVSCFLIDVADSMLSIGRGVNSALQLSRIGGGVGVNL 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  I   +  S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FLD
Sbjct: 121 SNLRASGDPIKQISNASSGVVPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHPDILHFLD 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +PD + + +  N    LFSP +V   +      +    + 
Sbjct: 181 TKKENADEKIRVKTLSLGLIVPDKYYELLKTNEPMYLFSPYDVEREYRT-PFAYIDITKE 239

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y   A    IK     +A  L +K+  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 240 YNNMAANPNIKKS-VFNARKLEQKISQLQQESGYPYILNIDTANQTNPV--DGKIIMSNL 296

Query: 585 CTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
           C+EI                 +    S NL +    N  D      ++  AVR L  V D
Sbjct: 297 CSEILQPQEPSKLDDDLSYKTIGTDISCNLGSTNIMNMIDSPDFGHSVEVAVRALTLVTD 356

Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
             +   +   K  N  +  IGLG MG  +AL    I Y SPEA+E  D     ++++++ 
Sbjct: 357 TTDVKEVPTVKHGNELYHTIGLGAMGLHTALARHQIEYGSPEALEFTDAYFLALNYYSLV 416

Query: 697 ASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAE------VRDELAMNRTSRLPWDEL 749
            S  +A+E    ++ F  S +  G +    +    +       +    +   S   W  L
Sbjct: 417 TSNRIARERHETFAKFDQSKYADGSYFDQYLNADFKFKSTKVAKIFKNIKLPSVTDWKAL 476

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           K+ V T G+ + N +A+AP  +I+ +   S S+ P  Q +  +  N  G       +L N
Sbjct: 477 KQAVITGGLYHRNRLAVAPNGSISYVNETSASLHPITQLVEQRQENKVGSIFYPAPYLSN 536

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                          +    +  A++ID   +I++ +  QK ID
Sbjct: 537 -------------------------------ETLPYYTPAYDIDQRKIIDTYAVAQKHID 565

Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           Q  SL L++                   + + L+ +   AW  G+K+ YY+R+       
Sbjct: 566 QGMSLTLFMRSVLKPDLYEWKDNNNLKMTTRDLNRLRNYAWTKGIKSLYYIRT------- 618

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             T        N                        ECE C
Sbjct: 619 -FTEDDEIKTAN------------------------ECESC 634


>gi|116620784|ref|YP_822940.1| vitamin B12-dependent ribonucleotide reductase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223946|gb|ABJ82655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 944

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 125/635 (19%), Positives = 237/635 (37%), Gaps = 38/635 (5%)

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
              R+E+      + A   +           E      ++       T   +G   PQ S
Sbjct: 130 ENFRMELAHLMLTQKACFNS--PVWFNVGVKETRGYGWNYDERVGKVTKLETGVMRPQCS 187

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           +CF+ +V D L  I    +   ML K+  G G++ + +R   A +    G++ G + F+K
Sbjct: 188 ACFIVSVKDSLESILDLAKTEGMLFKWGSGTGSNLSALREEDA-VLSGGGRASGPLSFMK 246

Query: 430 VANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
             +  A  +  GGK R+ A    L   H DV++F+           +  +   A  + + 
Sbjct: 247 GFDAFAGVIKSGGKTRRAAKMVILNVDHPDVDKFIWC---------KAKEEKKAYTLVEA 297

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG--EIKVFRKISAVALW 546
                     ++        +       EF  A    +    +G    +  ++  A  L 
Sbjct: 298 GYDSSLDGEAYSSIFFQNA-NNSVRASDEFMDAAMRDDDWWTKGVFTGQPVKRYKAKDLM 356

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
           R++     + G P + F    N   P ++   +++SN C+E        + + CNL S+N
Sbjct: 357 RQIAEATHQCGDPGMQFDTTVNRWHPCKNTARINASNPCSEYMF----LDDSACNLSSLN 412

Query: 607 LLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L+ +   + QFD +     + T +   + ++D   +  EK  +++H  R +GLG     +
Sbjct: 413 LMKYVGPDGQFDVEAFRHAVDTMILAQEIIVDNASYPTEKIGQNSHDFRPLGLGFANLGA 472

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV---FP 722
            L  + +PY S    + A      +   A   S  +A+  G +  +  +           
Sbjct: 473 LLMSMGVPYDSDHGRDFAGAITAVMCGQAYLTSSRVAEAVGPFEGYAANEDPFLEVIRMH 532

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQS 781
            DS+  +       A+   ++  WD   +  +  G RN+    IAPT TI  +    +  
Sbjct: 533 RDSVKRINGNHLPTALMSGAQECWDYAYESGRRSGYRNAQVTVIAPTGTIGFMMDCDTTG 592

Query: 782 IDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
           I+P    + Y K    G   +VN+ +   L +   +       +  H    G+I     +
Sbjct: 593 IEPDLALIKYKKLVGGGVIKIVNNTVPAALVKLG-YTPEQAEKIVTHIDSTGTIEGAPDL 651

Query: 838 PDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
             +   +   +F        I  M  +   +  Q +I  A S  + +  E + +++   Y
Sbjct: 652 KPEHLAVFDCSFRPQNGSRSIHYMGHVRMMAAVQPFISGAISKTINMPEECTVEEIMSAY 711

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++W +GLK     R  S      S+  G   K N
Sbjct: 712 TESWKLGLKAVAIYRDNSKRVQPLSSGSGKGEKKN 746


>gi|324990558|gb|EGC22494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK353]
          Length = 719

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 160/718 (22%), Positives = 278/718 (38%), Gaps = 84/718 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
             +      ++     Y++Y L  N     + ++   RV           E  A +  N 
Sbjct: 87  HAQGFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANE 145

Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   
Sbjct: 146 IIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL 
Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLS 265

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E 
Sbjct: 266 TKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITEK 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SNL
Sbjct: 325 YDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSNL 381

Query: 585 CTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                       CNLGS N++    +          +IRT  R L
Sbjct: 382 CSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  +   +      N      GLG MG  S L    I Y S EAVE        ++
Sbjct: 437 TFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMN 496

Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +    
Sbjct: 497 YWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA- 555

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801
              W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G    
Sbjct: 556 -EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                                              +  +    + +A+++D   +I+  +
Sbjct: 615 P-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYA 643

Query: 862 RRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
              + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 644 AATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|325697178|gb|EGD39065.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK160]
          Length = 719

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFAKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|107104599|ref|ZP_01368517.1| hypothetical protein PaerPA_01005678 [Pseudomonas aeruginosa PACS2]
          Length = 714

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  +E     F   L +     +   + N+G    +      +C ++
Sbjct: 48  WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 106

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 107 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 166

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV EF+  ++    +  R    N +  I D FM+ V
Sbjct: 167 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 222

Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            Q+A W L  P  V         D + +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 223 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 338

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
            L  +     D       +R  +   + SR          EL + +   G R ++  +IA
Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 518

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++            L+ E ++     E    +L 
Sbjct: 519 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 566

Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
            +   +    +    D    L     TA  + P   ++  +  QKW+D + S    +  +
Sbjct: 567 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 626

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +    IYR AW  GLK     R
Sbjct: 627 YPFEDFKDIYRYAWHQGLKGCTTFR 651


>gi|294623133|ref|ZP_06702019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium U0317]
 gi|291597502|gb|EFF28667.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium U0317]
          Length = 719

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALVAFFEENVKPNTMTFLSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVNITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYAMAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+ +   A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701


>gi|324993304|gb|EGC25224.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK405]
 gi|324995392|gb|EGC27304.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK678]
 gi|327461575|gb|EGF07906.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1]
 gi|327473299|gb|EGF18719.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK408]
          Length = 719

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKINYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|126457217|ref|YP_001074685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106a]
 gi|242311219|ref|ZP_04810236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106b]
 gi|126230985|gb|ABN94398.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106a]
 gi|242134458|gb|EES20861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei 1106b]
          Length = 844

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 254/655 (38%), Gaps = 82/655 (12%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352
              + +L ++Y               + RVA G+A  E  + +  +E  F   L      
Sbjct: 14  QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G        I+ AL + A   +  GG+G ++
Sbjct: 70  AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA++H T   + G   ++ V + +   V   G R+GA  A L+  H D+ EF++
Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            + + G    R ++ N +  + D FM  V Q+  W L    E S      G         
Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
              +     + V+ +  A A+W K++   ++   P + F    N  +  + +  + ++N 
Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635
           C E  L +       CNLG +NL     +           FD+  LA   RT VR LD+V
Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+    + + +      R IG+G  G    L +L + Y S +  + A      +   A 
Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            ASVELA ERGA++ F  + +                   L     +    +++++ ++ 
Sbjct: 412 RASVELALERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452

Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
            G+RNS+ ++IAPT T++       S  I+P++   Y ++ +           + +  ++
Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501

Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
               E     L     G +G +            +A ++     +   +  Q +ID + S
Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + +  +      + +Y  AW  GLK     R          T +  D    A 
Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609


>gi|293570203|ref|ZP_06681273.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
 gi|291609716|gb|EFF38976.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E980]
          Length = 718

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 150/691 (21%), Positives = 268/691 (38%), Gaps = 76/691 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHI 309
            E     I        +     + +  ++     +  ++ F    ++     Y++Y +  
Sbjct: 48  DEKLDYLISHDYIDESVLSIYGENNREFVKKLFIFAYNYGFKFKSFMAAYKFYNQYAMKT 107

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368
           N     +       V   L L   ++          L S  +  +TPT  N+G +   ++
Sbjct: 108 NDLNYYLENFEDRAVFNALYLANGDRNLAHK-ILEELISQRYQPATPTFLNAGKKRRGEM 166

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL  + D +  I   +     L++  GG+G + + +R  G+ I      S GV+P +
Sbjct: 167 VSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNLSNLRATGSPIKEIENASSGVLPVM 226

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G+R GA   YL  +H D+ EFL  +K   D++ R   ++    +PD 
Sbjct: 227 KLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLSTKKENADEKIRVKTLSLGLVVPDK 286

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547
           + + +  N    LF+P     +  +YG  F       E        ++ +  I+A  L +
Sbjct: 287 YYELLKTNEPMCLFNP---YHVERVYGIPFSYVDLTKEYDTMVDNGEIEKTVINARELEQ 343

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEETAVC 600
           ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI                 V 
Sbjct: 344 EISRLQQESGYPYILNIDTANRTNPV--KGKIIMSNLCSEILQPQEPSILNPDLSYKKVG 401

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
              S NL +    N  +      +I  A+R L  + D      +      N  +  IGLG
Sbjct: 402 TDISCNLGSMNMVNLMEAKDFGKSIEYAIRALTTITDRGAISEVPTVANGNSLYHTIGLG 461

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQ 718
            MG  + L L  I Y S EA+E  D     ++++++ AS ++A E    + +F+ S +  
Sbjct: 462 AMGLHTVLALNSIDYESDEALEFVDAFFLAMNYYSLKASHQIAIEKNETFHNFEYSRYAD 521

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSR-------LPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           G +  D             + +            W  LK+ V   G+ + N +AIAP  +
Sbjct: 522 GSY-FDYYLAKEFHFTSEKVAKIFENILLPTIEDWQLLKENVMKDGLYHRNRLAIAPNGS 580

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   S S+ P  Q +  +     G       +L N                      
Sbjct: 581 ISYINETSASLHPITQLIENRQEKKVGSIFYPAPYLSN---------------------- 618

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---------- 880
                       + + TA+ +D   +I+  ++ Q+ IDQ  SL L++             
Sbjct: 619 ---------KTLRYYKTAYNMDQRKIIDIYAKAQQHIDQGMSLTLFMRSVLPEGIYEWKK 669

Query: 881 ------SGKKLDFIYRQAWLMGLKTTYYLRS 905
                 + + L+ +   AW  G+K+ YY+R+
Sbjct: 670 QGSLKLTTRDLNRLRNYAWTKGIKSLYYVRT 700


>gi|332522761|ref|ZP_08399013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314025|gb|EGJ27010.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 719

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 166/718 (23%), Positives = 282/718 (39%), Gaps = 90/718 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+       +   +  +     IE         +      +  LA  LK E 
Sbjct: 32  KEALKAFFKENVLPNTKQFSSITDK-VTFLIENDYIETAFIQKYRPEFIEELAAILKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +   M  A+  A      E+ A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGDLYLESIEDRVMFNALYYA---DGNEELAKDLAIEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524
           K   D++ R   ++    +PD F +    N    LFSP    D+   YG  F      E 
Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSP---YDIEREYGIAFNYIDITEK 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+      +I   + + A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 325 YDELVANPKITKTK-LRARDLETEISKLQQESGYPYIINIDTANKTNPI--DGKIIMSNL 381

Query: 585 CTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                       CNLGS N+L    +          +I+   R L
Sbjct: 382 CSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  D     ++
Sbjct: 437 TYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESVEFTDIYFMLMN 496

Query: 692 FHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +  +  S  +A+E    +  F+ S +  G +    +         L+ E+     + + S
Sbjct: 497 YWTLVESNNIARERHTTFVGFEKSKYADGTYFDKYVTGEFVPKSDLVKELFKSHFIPQAS 556

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801
              W+ L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G    
Sbjct: 557 --DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                                              +  D    + +A+++D   +I+  +
Sbjct: 615 P-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYA 643

Query: 862 RRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
              + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 644 AATQHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|145300302|ref|YP_001143143.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853074|gb|ABO91395.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 715

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 141/651 (21%), Positives = 258/651 (39%), Gaps = 56/651 (8%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
            +   L+I   +Y L   +G+ I+      + RVA  LA +E E +     F   L +  
Sbjct: 19  LQETSLEIWDSKYRLKSKDGAPIDGSIDETYQRVARALAEQEREPDAWYEPFLWALRNGA 78

Query: 351 FMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
              +     N+G    +      +C ++ T+ D +  I G + E  +  K   G+G D++
Sbjct: 79  I-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYDFS 137

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H DV EF+  
Sbjct: 138 TLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVIEFIQA 197

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----------DLHDLYG 515
           ++    +  R    N +  I + F+K V ++A W+L  P              D   ++ 
Sbjct: 198 KR----EDGRLRQFNLSLLITEDFVKAVKEDAPWSLIFPYTAKEVEQDGIGLDDPEVVFW 253

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            ++            +   KV++ + A  LW  ++T  ++   P     D  N  +    
Sbjct: 254 ADWPNKEGVVINALGQVACKVYKTMPARKLWNVIMTSTYDYAEPGFILIDKVNQMNNNWF 313

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630
              + ++N C E  L         C LGS+NL     +       FD+      +    R
Sbjct: 314 CEEIRATNPCGEQPLPPY----GACLLGSVNLTRFVRDPFTEQAAFDWQGFRKVVAIFTR 369

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNV++IN   + K ++     R  G+G +G  S L +L I Y S  +V   ++  + +
Sbjct: 370 MLDNVVEINQLPLAKQREEITAKRRHGMGFLGLGSTLTMLQIKYGSAASVAFTEQVSQEL 429

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVRDELAMNRTSR 743
           +      S+ LA+E+G     +      G           D I L  +V+ ++   R SR
Sbjct: 430 AMTGWQESLRLAKEKGVAPIMEQEFEVTGKMLRLHPEMAADGIKLGDKVKGKVLHARYSR 489

Query: 744 LPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795
                      L   +  +G R ++  +IAPT TI+       S  I+PS+ + Y ++ +
Sbjct: 490 YMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVI 549

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
                          +  D++   ++      + G++   E     L     TA +I P 
Sbjct: 550 --------KPGKKSKESVDVYSFELLAYRELVNAGAMPYSEDDASRLPGYFITADDISPA 601

Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
             ++  +  Q+WID + S    +  +   ++   IY  A   GLK     R
Sbjct: 602 QHVDIQAAAQRWIDSSISKTANVPTDFPFEQFKDIYMYASDSGLKGCTTFR 652


>gi|171779439|ref|ZP_02920403.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282056|gb|EDT47487.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 718

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 154/717 (21%), Positives = 273/717 (38%), Gaps = 77/717 (10%)

Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
              +E L        K        +  +       + ++  ++          ++     
Sbjct: 23  HYDKEALYEYLNTEIKNNLKSFDNIDAKLNYLIAHDYIEESIIDS-YGKNSRAFVKELFD 81

Query: 287 YERDFAF---EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           +  ++ F    ++     Y++Y +  N S+  +       V   L L   ++        
Sbjct: 82  FAYNYGFEFKSFMAAYKFYNQYAMKTNDSKYYLENFEDRAVFNALYLANGDRNLAHK-IL 140

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
             L S  +  +TPT  N+G +   ++ SCFL  + D +  I   +     L++  GG+G 
Sbjct: 141 EELISQRYQPATPTFLNAGKKRRGEMVSCFLIDIEDSMLSIGRNINSALQLSRIGGGVGV 200

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + +R  G+ I      S GV+P +K+  D+    NQ G+R GA   YL  +H D+ EF
Sbjct: 201 NLSNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEF 260

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           L  +K   D++ R   ++    +PD + + +  N    LF+P     +  +YG  F    
Sbjct: 261 LSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFNP---YHVERVYGIPFSYVD 317

Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              E        ++ +  I+A  L +++  +  E+G+P+I   D  N  +P    G +  
Sbjct: 318 LTKEYDTMVDNDEIEKTVINARELEQEISRLQQESGYPYILNIDTANRTNPV--KGKIIM 375

Query: 582 SNLCTEITLN-------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           SNLC+EI                 V    S NL +    N         +I  A+R L  
Sbjct: 376 SNLCSEILQPQEPSILNPDLSYKKVGTDISCNLGSMNMVNLIKSKDFGKSIEYAIRALTT 435

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D      +      N  +  IGLG MG  + L L  I Y S EA+E  D     ++++
Sbjct: 436 VTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMNYY 495

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LP 745
           ++ AS ++A E    +  F+ S +  G    D             + +            
Sbjct: 496 SLKASHQIAVEKNETFHDFENSRYADG-SHFDYYLAKEFHFTSEKVAKIFENILLPTIED 554

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W  LK+ V   G+ + N +AIAP  +I+ I   S S+ P  Q +  +     G       
Sbjct: 555 WQLLKEDVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQEKKVGSIFYPAP 614

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L N                                  K + TA+ +D   +I+  ++ Q
Sbjct: 615 YLSN-------------------------------KTLKYYKTAYNMDQRKIIDIYAKAQ 643

Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           + IDQ  SL L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 644 QHIDQGMSLTLFMRSVLPEGIYEWKKQGSSKLTTRDLNRLRNYAWTKGIKSLYYVRT 700


>gi|315231895|ref|YP_004072331.1| ribonucleotide reductase of class II, coenzyme B12-dependent
           [Thermococcus barophilus MP]
 gi|315184923|gb|ADT85108.1| ribonucleotide reductase of class II, coenzyme B12-dependent
           [Thermococcus barophilus MP]
          Length = 1042

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 187/417 (44%), Gaps = 24/417 (5%)

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E+K  +    + ++++    + E             ++   ++V     S  C E  L  
Sbjct: 562 ELKNIKVGDCIEVFKEGCKKVVEVASVGNQLVYTLTMKEVHEYVANSIISRNCGEEPLY- 620

Query: 593 SSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
              E   CNL SINL             FD+D+ A  I+   + LDN ID+N   + +  
Sbjct: 621 ---EYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNSIDVNKFPLPEID 677

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
            +    R IG+G+MG   AL  L IPY S E  +   ++ E+++F+A   SVE A++RG 
Sbjct: 678 YNTKLTRRIGVGMMGLADALFKLGIPYNSKEGFDFMRKATEYLTFYAYKYSVEAAKKRGT 737

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  +  S + +G  P++                   LPWDEL + +K  G+RN+      
Sbjct: 738 FPLYDKSDYPEGKLPVE----------GFYHREIWNLPWDELAEEIKKYGVRNAMVTTCP 787

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +++ I   S  I+P +  +Y KS   G+F  V+     ELK+R L+ + +++ +  +
Sbjct: 788 PTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLYSDELLAKISNN 847

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
            GS+  +E IP+D++++  TA ++  +  I + +  Q W+  + S  + + ++ + + + 
Sbjct: 848 YGSVQGLEEIPEDMQRVFVTAMDVHWLDHILAQASIQLWLTDSASKTINMPNDATVEDVK 907

Query: 887 FIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
             Y  A+ +G K     R  S +    SVE    K V  K +    +          
Sbjct: 908 AAYLLAYKLGCKGVTVYRDGSLSVQVYSVEGEKKKRVPAKPSEYAKSILKEIVEKEP 964



 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 110/551 (19%), Positives = 209/551 (37%), Gaps = 115/551 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  +I  AI +A   V        +R + ++  + +  V R+      
Sbjct: 5   KVMKRDGRIVPFDEGRIRWAIQRAMWEV-------GVRDEKLLDKVVKDVVGRI-NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G   + + Y+LYR++++++R  +    +            
Sbjct: 57  GKIPHIENIQDIVELELMRNGLFDVAKAYILYRKKKAEIREEKKKILNKDK--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  +    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SINALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
           ++ E      + R L E++       +        + +        F + ++        
Sbjct: 129 MKNEEGKIIESPRELFERV------AILAVIPDLLYDDRVFSKEGGFAQDLKRV------ 176

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325
                   L      L          +G   L   +F        E+ +   M+V+    
Sbjct: 177 --DYYREHLDEFDKKL---------SIGRFKLNKYHFERFLSLYQELAEKGQMKVSIDEI 225

Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
             M       + EK   E++ L+++  FM +TP L N+G     LS+CF+  + DD+  I
Sbjct: 226 VKMLEDGAFDKYEKEIEEYFRLMTNQIFMPNTPALINAGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + AM+ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG 
Sbjct: 286 MKAAHDVAMIQKMGGGTGVNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGV 345

Query: 444 RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R+GA    LE WH D+E+F+  + KN G +     +++   W  + F + + +   + L 
Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGRKYPLI 403

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                              K  R++   AL+ ++  M +    P + 
Sbjct: 404 NPRT---------------------------GKKVREVDPKALFEELAYMAWAKADPGVV 436

Query: 563 FKDPCNIRSPQ 573
           F D  N R+  
Sbjct: 437 FFDVINRRNVL 447


>gi|225854652|ref|YP_002736164.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae JJA]
 gi|225723895|gb|ACO19748.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae JJA]
          Length = 719

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  LA  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|332362637|gb|EGJ40435.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK49]
          Length = 719

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELTTFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFDNFEKSDYANGTYFDKYLTDEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|256848139|ref|ZP_05553583.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715199|gb|EEU30176.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 723

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 158/709 (22%), Positives = 276/709 (38%), Gaps = 70/709 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +  L    K   +        +  E     I+             +  +  L + LK + 
Sbjct: 34  KLALDDFIKNNVEPNTKHFASV-QERLTWLIDHDYLEEGFIRQYRNEFIDKLYDYLKSKH 92

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y +Y L  N     +      RVAM         E  A++  + L + 
Sbjct: 93  FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGNEDLAMDLAHELINQ 151

Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+   R  +  SCF     D++  I   +     L+K  GG+G + T +R
Sbjct: 152 RYQPATPTFLNTGRKRRGEFVSCFEIQTTDNMNTIGRTINSALQLSKIGGGVGINLTNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I    G + GV+P +K+  D     NQ G+R+GA   YL  +H D+ EFL  +K 
Sbjct: 212 EAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIVEFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F + V  +    LFSP +V  ++      +    + Y+  
Sbjct: 272 NADEKIRIKTLSLGVTVPDKFYELVENDEDMYLFSPYDVERVYGE-PFAYVDITKEYDNL 330

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
               EI   +KI+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+EI
Sbjct: 331 VANDEITK-KKINARDLEDEISKLQQESGYPYIVNIDTENRANPI--DGKIIMSNLCSEI 387

Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC- 640
                    N       +    S NL +    N  +      +IR   R L ++ DI   
Sbjct: 388 AQVQKPSVVNDDQTYQELGTDVSCNLGSTNIANMMETPDFGKSIRAITRGLTHISDIENL 447

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +   K+ N    AIGLG MG    L   HI Y SP A+E        +++  + AS E
Sbjct: 448 DIVPSIKRGNARSHAIGLGAMGLHGYLAKHHIQYGSPVALEFTSVYFMLLNYWTLVASHE 507

Query: 701 LAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRV 753
           +A E +  ++ F  S +  G +    I      + E      +         W +LK  +
Sbjct: 508 IAVERQETFADFAKSAYADGSYFDKYITKDWGPQSEAVQELFAGIFIPSIDDWKQLKAAI 567

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812
              G+ N+  +A+AP  + + I   + S+ P    +  +   M G       +L N+   
Sbjct: 568 MKDGIYNAYRLAVAPNGSTSYIGDSTSSLQPIINKIEERQEKMIGKIYYPAPYLSND--- 624

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                                           + +A++ D   +I++ +  Q+ +DQ+ S
Sbjct: 625 ----------------------------TMPYYKSAYDTDMRSVIDTYAAAQQHVDQSLS 656

Query: 873 LNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           + L++                   + + L+ +   A+  G+K+ YY+R+
Sbjct: 657 MTLFMRSTIPEGMYEWKDGRTDKMTTRDLNILRHYAYQKGIKSIYYIRT 705


>gi|145639186|ref|ZP_01794793.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
 gi|145271748|gb|EDK11658.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
          Length = 504

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 124/512 (24%), Positives = 200/512 (39%), Gaps = 27/512 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K       + 
Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ +   
Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
            TLFSP +V  L++ +     +FE  Y  YE+     +    R + AV ++  ++     
Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408

Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611
           TG  +I   D CN  SP       V  SNLC EI L +   +      G I L       
Sbjct: 409 TGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                + D+L      AVR LD ++D      
Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQVPCC 500


>gi|322387900|ref|ZP_08061507.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           infantis ATCC 700779]
 gi|321141173|gb|EFX36671.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           infantis ATCC 700779]
          Length = 719

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 158/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     I++        +      L  L   +K + 
Sbjct: 32  KEALDAFFKENVVPNSMVFDSITDK-IDYLIKQDYIETAFIKKYRPEFLEELYQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLLNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +               + E+ + + +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYANGTYFDKYTSGQFVPKSDRVKELFEGIFIPSAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  +    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|46519448|gb|AAT00096.1| JM119 [Macaca fuscata rhadinovirus]
          Length = 788

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 168/753 (22%), Positives = 290/753 (38%), Gaps = 90/753 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLH 308
            +Y   + E+            +  L  L  D K  + +       YL     YD Y L 
Sbjct: 75  KDYLTVFGEKLSDEVREFMLKHEAALDGLLQDFKQSKAYANLVNCGYLSAVRFYDTYVLR 134

Query: 309 INGS--RIEMPQAFFMRVAMGL--------ALKETEKEKRAVEF-----------YNLLS 347
            +GS    E     FMRVA+ +         L++T +     E            ++ +S
Sbjct: 135 THGSSPIFESVAQMFMRVAVFVACQCIKFPCLRKTLRHLVQSETELDEMYLVGYAFHYIS 194

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSGGLGNDWT 405
           S    C+TP L ++G R  QLSSCF+           +    +E + L     G+G D +
Sbjct: 195 SQIVCCATPVLRSAGLRGGQLSSCFILKPSMATENKTLKALHEEMSPLLASKSGVGIDVS 254

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
                         + + +   LK+ N      N    R     AY+E WH  + +FL+ 
Sbjct: 255 SFA-----------EHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNA 303

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYE 523
           +     +  R H++     +P+LF +    N    W LF+P+   +L  LYG EFEI Y 
Sbjct: 304 KMPENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEIEYN 361

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582
                      K    +   ++   ++  + +TG P++  K+  N     +  G  ++ S
Sbjct: 362 RLVAA-----GKHSSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCS 416

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-------------YDKLASTIRTAV 629
           NLC EI       + +VCNL +I+L       +               ++ L   +  AV
Sbjct: 417 NLCAEIVQQP-EGQASVCNLANISLPKCLRPPRGKSGVEPGKGDVTFGFELLDDAVEAAV 475

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +++  I       E  ++     R++G+G+ G       L   Y   E+ ++  E  + 
Sbjct: 476 IIVNACILGGTAPTESVRRGQK-ERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQA 534

Query: 690 ISFHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           + F A+  S E  L  E   +  ++ S   QGVF   +   +      L         W+
Sbjct: 535 MYFAAVHTSHEIVLLGEGTPFHGWERSRLAQGVFHWQTWDGVKPSHPPLE-------RWE 587

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L + +   G+ NS  +A+ PTA  + + G +++  P + N+  K     +    N    
Sbjct: 588 QLGRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFF 647

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             +K  DL        ++ + G + +      D  KI  TAF+  P+  +E A  R  ++
Sbjct: 648 KRVKPGDLRT------VRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFV 701

Query: 868 DQAQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923
           DQ+QSLN +L E   +    +  +    + +GLKT  YY R      ++K T       L
Sbjct: 702 DQSQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCR------IQKQTKLNALQCL 755

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSD--TECEVCQ 954
           + V   + +S             +    C  CQ
Sbjct: 756 DQVVGDNTSSEGAESNRVQKADGEQAEVCLACQ 788


>gi|332365966|gb|EGJ43722.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1059]
          Length = 719

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 162/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   +      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ER G + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGGTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|307704818|ref|ZP_07641713.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK597]
 gi|307621647|gb|EFO00689.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK597]
          Length = 719

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 158/714 (22%), Positives = 286/714 (40%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIDHNYIETAFIKKYRPEF-LEELSQFIKEQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 ------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
                                  CNLGS N++    +          +IR  VR L  V 
Sbjct: 386 LQVQEPSLINDAQEYLQMGTDISCNLGSTNVVNMMTSP-----DFGRSIRAMVRALTFVT 440

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  +
Sbjct: 441 DSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTL 500

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPW 746
             S  +A+ERG  + +F+ S + +G +    I          + E+  ++ +       W
Sbjct: 501 VESNNIARERGITFHNFEKSDYAKGSYFDKYITGEFVPKSDRVKELFKDVFIPSA--DDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
            EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G        
Sbjct: 559 AELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP--- 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                          +  +    + +A+++D   +I+  +   +
Sbjct: 616 ----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|296876815|ref|ZP_06900863.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432317|gb|EFH18116.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 719

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 158/712 (22%), Positives = 284/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K + 
Sbjct: 32  KEALDAFFKENVVPNTKTFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N    + GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNKLAHSFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +               + E+  ++ +       W E
Sbjct: 503 SNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPSA--EDWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  +    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|289751723|ref|ZP_06511101.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
 gi|289692310|gb|EFD59739.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
          Length = 733

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 162/672 (24%), Positives = 273/672 (40%), Gaps = 72/672 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 71  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686

Query: 885 LDFIYRQAWLMG 896
           ++     AW  G
Sbjct: 687 VNKAQIYAWAQG 698


>gi|331266448|ref|YP_004326078.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis Uo5]
 gi|326683120|emb|CBZ00738.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis Uo5]
          Length = 719

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 159/712 (22%), Positives = 283/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L   +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFLKKYRPEFLEELHQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|295397899|ref|ZP_06807961.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
 gi|294973879|gb|EFG49644.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus
           viridans ATCC 11563]
          Length = 727

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 166/702 (23%), Positives = 286/702 (40%), Gaps = 77/702 (10%)

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301
             H     ++       I+  V+   L E  ++ +D  ++   ++   DF F +      
Sbjct: 46  LEHVNPNTVFFYTLDEKIDYLVEHDYLEEGFLNLYDREFVKRLMQETYDFKFRFKSFMSA 105

Query: 302 YDRYFL----HINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           Y  Y        +G R  E  +    R+           E+ A +  + + +  +  +TP
Sbjct: 106 YKFYTQYALKTNDGKRYLERYED---RIVFTALYLANGDEQVASDLRDEMINQRYQPATP 162

Query: 357 TLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
           T  N+   R  +L SCFL    DD+  I   +     L++  GG+G + T +R  G  I 
Sbjct: 163 TFLNAGRKRRGELVSCFLIQATDDMNSIGRTINSALQLSRLGGGVGVNLTNIRAAGDPIK 222

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
                S G+IP +K+  D+    NQ G+R GA   YL  +H DV  FL  +K   D++ R
Sbjct: 223 KIENASSGIIPVMKLLEDSFSYSNQLGQRNGAGAVYLSVFHPDVVSFLSAKKENADEKIR 282

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              ++    +PD F +   ++    LFSP +V  ++      +    E Y+   +  EIK
Sbjct: 283 VKTLSLGLVVPDKFYELAEKDEMMYLFSPYDVERIYGK-PYAYVNITEEYDNLVNNPEIK 341

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL----- 590
             + I A  L   +  +  E+G+P+I   D  N        G +  SNLC+EI       
Sbjct: 342 KSK-IRARDLEDDISKLQQESGYPYIINIDTVND--QNPIDGTIVMSNLCSEILQVQRPS 398

Query: 591 --NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAK 647
             N+      +    S NL +   NN         ++ T VR L  V D +    +   K
Sbjct: 399 IINNDQTFEELGTDISCNLGSTNINNLMHSPDFGKSVDTMVRGLTYVTDASAIDVVPSIK 458

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG- 706
           K N     IGLG MG  +   L  + Y SPE++E  D+    ++++ + AS  +A+ERG 
Sbjct: 459 KGNDLAHTIGLGAMGLHTYFALNEMHYGSPESIEFTDKYFLLLNYYTLVASNRIAKERGV 518

Query: 707 AYSSFKGSLWDQGVFPIDSIGL---LAEVRDELA---MNRTSRLPWDELKKRVKTIGMRN 760
            + +F+ S +  G +    I         R       ++  ++  W  L+  V+  G+ +
Sbjct: 519 TFENFENSTYATGEYFDKYINEETTFEFERVAAQFEGIHIPTQEDWKALRAAVQEHGLYH 578

Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEA 819
            N +A+APT +I+ +   S S+ P  Q +  +    +G       FL N           
Sbjct: 579 QNRLAVAPTGSISYVNETSSSLHPIIQLIEERQEKKTGKTYYPAPFLSN----------- 627

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-- 877
                                    + +A++ID   +I+  +  Q+ IDQ  SL L++  
Sbjct: 628 --------------------KTLPYYQSAYDIDNRRIIDIYAAAQQHIDQGMSLTLFMRS 667

Query: 878 --------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                          + + + L+ + R AW  G+K+ YY+R+
Sbjct: 668 DIPAGLYPWKEGRTSKMTTRDLNILRRYAWKRGIKSIYYVRT 709


>gi|169834419|ref|YP_001694621.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae Hungary19A-6]
 gi|168996921|gb|ACA37533.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 719

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 157/715 (21%), Positives = 284/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  L+  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELSQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   +++    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYNV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S + +G +    +          + E+  ++ +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|134288270|ref|YP_001110433.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
 gi|134132920|gb|ABO59630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
          Length = 830

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 139/624 (22%), Positives = 240/624 (38%), Gaps = 83/624 (13%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL-------YGIF 384
             + ++ + FY  L    F+ +      +GT     L +CF+  V D +        GI+
Sbjct: 52  EIRAEKEIVFYEALEHG-FVPAGRINSAAGTDIKATLINCFVQPVGDSVSEYKNGVPGIY 110

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL + A   +  GG+G D++ +R  GA + GT  ++ G + F+ V + +   V   G R
Sbjct: 111 PALLQAAETMRRGGGVGYDFSEIRPAGALVSGTFSRASGPVSFMAVFDRSCSTVESAGAR 170

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA    L   H D+  F+  +     D+    + N +  + D FM+ V ++    L+  
Sbjct: 171 RGAQMGALRVDHPDILTFIHAK-----DKGDLTNFNISIGVTDAFMRAVERDEEVELWHA 225

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            E                   E         V+RK  A  +W  ++   ++   P I F 
Sbjct: 226 AEPHPDVK-----------QPETYRREDGTWVYRKQRAREIWEAVMLSTYDHAEPGILFI 274

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYD 619
              N  +    V  + ++N C E  L         C+LGS+NL             FD++
Sbjct: 275 SRINEENNLHAVETIRTTNPCGEQPLPPY----GCCDLGSVNLTMFVRNAFTDQAYFDFE 330

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                +R  VR+LD V+D     + + +      R IGLG +G  SAL +L I Y S + 
Sbjct: 331 GFKDLVRVGVRMLDLVLDATFWPLPEQRDEAMAKRRIGLGFLGLGSALVMLGIRYDSDKG 390

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +A +  E +   A  AS+ELA+E+GA+ + +   +                      +
Sbjct: 391 CSMAAQISEVMRDEAYLASIELAKEKGAFPALEVEQY--------------------LES 430

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSG 797
             ++   + ++ +++  G+RNS+ ++IAPT TI  A     S  I+P++   Y +     
Sbjct: 431 GFAKRLPEHIRAQIREHGIRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRKKRMA 490

Query: 798 ----DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
               +   V        + R    +++        GS                TA E+  
Sbjct: 491 DGTHEIFEVADHAYRLYRHRGGNTDSL-------PGS--------------FVTALEMSA 529

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  +      Q +ID + S  + +  +   +    +Y  AW  GLK     R  S     
Sbjct: 530 MDHLRMLQAVQPYIDTSISKTVNVPADYPYEDFQNLYFAAWKAGLKGLATYRPNSVLGSV 589

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTH 936
            S +        AV VT       
Sbjct: 590 LS-VDAPAAPEKAVEVTPIVGEDP 612


>gi|289167886|ref|YP_003446155.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus mitis B6]
 gi|288907453|emb|CBJ22290.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus mitis B6]
          Length = 719

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 158/712 (22%), Positives = 287/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSIKDKINYLIDHNYIETAFIKKYRPEF-LEELSQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIYQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S + +G +    I          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYAKGSYFDKYITGEFIPKSDRVKELFKDVFIPSAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  +    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|327458664|gb|EGF05012.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1057]
 gi|332363058|gb|EGJ40845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK355]
          Length = 719

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 162/715 (22%), Positives = 280/715 (39%), Gaps = 84/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  +    +   +  E     IEE    +   +      +  L   +  + 
Sbjct: 32  KEALEAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFIHAQ- 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y++Y L  N     + ++   RV           E  A +  N +  
Sbjct: 90  DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +
Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K
Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E Y+ 
Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITEKYDE 327

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                 I   + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+E
Sbjct: 328 LVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSNLCSE 384

Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS N++    +          +IRT  R L  V
Sbjct: 385 ILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y S EAVE        +++  
Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +       
Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA--ED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|270292679|ref|ZP_06198890.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus sp. M143]
 gi|270278658|gb|EFA24504.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus sp. M143]
          Length = 719

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 159/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L+  +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFIKKYRPEFLEELSQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E YE  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYEEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE++E        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  +  F+ S +  G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHKFEKSDYANGSYFDKYVTGEFIPKSDRVKELFKDVFIPSAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|15901044|ref|NP_345648.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TIGR4]
 gi|15903109|ref|NP_358659.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae R6]
 gi|111657124|ref|ZP_01407909.1| hypothetical protein SpneT_02001650 [Streptococcus pneumoniae
           TIGR4]
 gi|116516073|ref|YP_816516.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae D39]
 gi|148985788|ref|ZP_01818916.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP3-BS71]
 gi|148990436|ref|ZP_01821594.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP6-BS73]
 gi|148994531|ref|ZP_01823711.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP9-BS68]
 gi|148999043|ref|ZP_01826475.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP11-BS70]
 gi|149004131|ref|ZP_01828934.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS69]
 gi|149008158|ref|ZP_01831677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149013340|ref|ZP_01834071.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149026428|ref|ZP_01836565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483242|ref|ZP_02708194.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486505|ref|ZP_02711013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489009|ref|ZP_02713208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP195]
 gi|168577271|ref|ZP_02723065.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae MLV-016]
 gi|221231889|ref|YP_002511041.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pneumoniae ATCC 700669]
 gi|225856855|ref|YP_002738366.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae P1031]
 gi|225858967|ref|YP_002740477.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae 70585]
 gi|225860978|ref|YP_002742487.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237649544|ref|ZP_04523796.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822454|ref|ZP_04598299.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298229750|ref|ZP_06963431.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255395|ref|ZP_06978981.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502820|ref|YP_003724760.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067833|ref|YP_003876799.1| ribonucleotide reductase subunit alpha [Streptococcus pneumoniae
           AP200]
 gi|307127226|ref|YP_003879257.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae 670-6B]
 gi|14972660|gb|AAK75288.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus pneumoniae TIGR4]
 gi|15458688|gb|AAK99869.1| Ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           pneumoniae R6]
 gi|116076649|gb|ABJ54369.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae D39]
 gi|147755113|gb|EDK62168.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP11-BS70]
 gi|147757864|gb|EDK64874.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760397|gb|EDK67376.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762930|gb|EDK69877.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147922092|gb|EDK73215.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924288|gb|EDK75382.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP6-BS73]
 gi|147927201|gb|EDK78237.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929259|gb|EDK80260.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043335|gb|EDT51381.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570440|gb|EDT90968.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572571|gb|EDT93099.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae SP195]
 gi|183577174|gb|EDT97702.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae MLV-016]
 gi|220674349|emb|CAR68895.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae ATCC 700669]
 gi|225721006|gb|ACO16860.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae 70585]
 gi|225725183|gb|ACO21035.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae P1031]
 gi|225727917|gb|ACO23768.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238415|gb|ADI69546.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301794278|emb|CBW36699.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae INV104]
 gi|301800115|emb|CBW32716.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae OXC141]
 gi|306409370|gb|ADM84797.1| Ribonucleotide reductase, alpha subunit [Streptococcus pneumoniae
           AP200]
 gi|306484288|gb|ADM91157.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae 670-6B]
 gi|327389422|gb|EGE87767.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA04375]
 gi|332073522|gb|EGI84001.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA17570]
 gi|332074794|gb|EGI85266.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA41301]
 gi|332075111|gb|EGI85582.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA17545]
 gi|332200631|gb|EGJ14703.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA41317]
 gi|332201650|gb|EGJ15720.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA47368]
 gi|332203033|gb|EGJ17101.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae GA47901]
          Length = 719

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  LA  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|329913475|ref|ZP_08275946.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545350|gb|EGF30583.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 794

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 138/637 (21%), Positives = 249/637 (39%), Gaps = 81/637 (12%)

Query: 320 FFMRVAMGLALKE---TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
              RVA G+A  E     ++    +F     +                   L +CF+  V
Sbjct: 1   MRTRVAKGIAEPETNAKNRKAWTAKFLWAQQNGWVPAGRINSAAGLPLKATLMNCFVQPV 60

Query: 377 PDDLYGI-------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            D + G        + A+ + A   +  GG+G +++ +R  GA + GTN ++ G I +++
Sbjct: 61  GDSVTGFSDGKPGIYTAIAQAAETMRRGGGVGYNFSEIRPEGALVKGTNSRASGPISYMR 120

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           V + +   V   G R+GA    L   H DV  F+  +++         + N +  + D F
Sbjct: 121 VFDSSCSTVESAGARRGAQMGVLNCDHPDVLNFITAKRDGS-----LSNFNLSVGVTDAF 175

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+ V  +    L           +    F+              + V+++++A  +W  M
Sbjct: 176 MQAVASSGTIQLIHKA-APGNELMQAGAFQR----------DDGMWVYKEVAAQEIWGLM 224

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +   ++   P I + D  N  +   +   + ++N C E  L     +   C+LGS+NL  
Sbjct: 225 MQSTYDFAEPGILYIDRMNQENNLYYCEKIEATNPCAEQPLP----DYGCCDLGSVNLTL 280

Query: 610 HFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
              +       FDY K +  ++  +R LDNV+D +   +E+ +      R IGLG +G  
Sbjct: 281 CVTDPFSERASFDYAKFSQLVQIGIRFLDNVLDASQWPLEEQRLEAMNKRRIGLGFLGLG 340

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           SA+ +L I Y S      A +  E +   A  ASV+LA+E+GA+  F  + +  G F   
Sbjct: 341 SAMVMLGIRYDSDAGRTFAAKVSEEMRDAAYRASVDLAKEKGAFPLFDAAKYLAGAFV-- 398

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSI 782
                                  ++++ + T G+RNS+ ++IAPT TI  + G   S  I
Sbjct: 399 ------------------SRLPADIREGIATFGIRNSHLLSIAPTGTITLVFGDNASNGI 440

Query: 783 DPSYQNLYVKSN--MSGDFT--VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +P++   Y +    M G      V        +Q                  + +  ++P
Sbjct: 441 EPAFSWNYTRKKRMMDGSIQEFEVADHAWRLYRQMGFD--------------VSDDSKLP 486

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
            +      +A  +     ++     Q +ID + S  + +  +    +   +Y   W  GL
Sbjct: 487 PE----FVSALTMSATDHMKMLESVQPFIDTSISKTVNVPADYDFDEFRNLYMDGWKAGL 542

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           K     R  S      S +K    ++ AV V   N  
Sbjct: 543 KGLATYRPNSILGSVLS-VKSATPEVAAVAVGPDNDP 578


>gi|307708707|ref|ZP_07645170.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis NCTC 12261]
 gi|307615281|gb|EFN94491.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis NCTC 12261]
          Length = 719

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 157/715 (21%), Positives = 283/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  L+  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELSQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELREQVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|296392362|ref|ZP_06881837.1| NrdJa [Pseudomonas aeruginosa PAb1]
          Length = 714

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  +E     F   L +     +   + N+G    +      +C ++
Sbjct: 48  WQRVAGALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 106

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 107 GTIQDSMDHILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 166

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV EF+  ++    +  R    N +  I D FM+ V
Sbjct: 167 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 222

Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            Q+A W L  P  V         D + +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 223 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 338

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
            L  +     D       +R  +   + SR          EL + +   G R ++  +IA
Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 518

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++            L+ E ++     E    +L 
Sbjct: 519 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 566

Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
            +   +    +    D    L     TA  + P   ++  +  QKW+D + S    +  +
Sbjct: 567 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 626

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +    IYR AW  GLK     R
Sbjct: 627 YPFEDFKDIYRYAWHQGLKGCTTFR 651


>gi|323352632|ref|ZP_08087602.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis VMC66]
 gi|322121668|gb|EFX93414.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis VMC66]
          Length = 719

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELAHKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFASIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|182684088|ref|YP_001835835.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           pneumoniae CGSP14]
 gi|303255567|ref|ZP_07341619.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS455]
 gi|303260587|ref|ZP_07346553.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP-BS293]
 gi|303262721|ref|ZP_07348660.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265255|ref|ZP_07351166.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS397]
 gi|303267602|ref|ZP_07353444.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS457]
 gi|303269941|ref|ZP_07355679.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS458]
 gi|182629422|gb|ACB90370.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           pneumoniae CGSP14]
 gi|301801955|emb|CBW34683.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pneumoniae INV200]
 gi|302597473|gb|EFL64567.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS455]
 gi|302636153|gb|EFL66649.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638300|gb|EFL68769.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae SP-BS293]
 gi|302640523|gb|EFL70932.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS458]
 gi|302642868|gb|EFL73173.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS457]
 gi|302645226|gb|EFL75462.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae BS397]
          Length = 719

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/715 (22%), Positives = 279/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  LA  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   +      +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGA-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVVNPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|322389172|ref|ZP_08062733.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           parasanguinis ATCC 903]
 gi|321144077|gb|EFX39494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           parasanguinis ATCC 903]
          Length = 719

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 157/709 (22%), Positives = 283/709 (39%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K + 
Sbjct: 32  KEALDAFFKENVVPNTKAFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E+ A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEEIAKDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640
                      ++E        S NL +    N         +IR  VR L  V D  + 
Sbjct: 386 LQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHI 445

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +      N      GLG MG  S L    I Y SPE+VE        +++  +  S  
Sbjct: 446 VAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESNN 505

Query: 701 LAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKK 751
           +A+ERG  + +F+ S +  G +               + E+  ++ +       W EL+ 
Sbjct: 506 IARERGVTFHNFEKSDYANGTYFDKYTTGAFVPKSDRVKELFKDIFIPSA--EDWAELRA 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
           +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G             
Sbjct: 564 KVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-------- 615

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +  +    + +A+++D   +I+  +   + +DQ 
Sbjct: 616 -----------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 653 LSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|319947338|ref|ZP_08021571.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           australis ATCC 700641]
 gi|319746580|gb|EFV98840.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           australis ATCC 700641]
          Length = 719

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 159/709 (22%), Positives = 282/709 (39%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   DF L  LA  +K + 
Sbjct: 32  KEALDAFFKENVVPNTMAFDSITDKINYLIEHNYIETAFIQKYRPDF-LEELAQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEDIAKDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKIRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640
                      ++E        S NL +    N         +IR  VR L  V D  + 
Sbjct: 386 LQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHI 445

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +      N      GLG MG  S L    I Y SPE+VE        +++  +  S  
Sbjct: 446 VAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESNN 505

Query: 701 LAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKK 751
           +A+ERG  + +F+ S +  G +               + E+  ++ +       W EL+ 
Sbjct: 506 IARERGITFHNFEKSDYANGSYFDKYTTGEFVPQSDRVKELFKDIFIPSA--EDWAELRA 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
           +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G             
Sbjct: 564 KVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-------- 615

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +  D    + +A+++D   +I+  +   + +DQ 
Sbjct: 616 -----------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 653 LSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|330831086|ref|YP_004394038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas veronii B565]
 gi|328806222|gb|AEB51421.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aeromonas veronii B565]
          Length = 715

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 143/653 (21%), Positives = 256/653 (39%), Gaps = 60/653 (9%)

Query: 293 FEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
            +   L+I   +Y L   +G+ I+      + RVA  LA +E E E     F   L +  
Sbjct: 19  MQETSLEIWDSKYRLKSKDGTPIDSSIDETYQRVARALAEQELEPEAWYEPFLWALRNGA 78

Query: 351 FMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
              +     N+G    +      +C ++ T+ D +  I G + E  +  K   G+G D++
Sbjct: 79  I-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYDFS 137

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H DV EF+  
Sbjct: 138 TLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVIEFIQA 197

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----------DLHDLYG 515
           ++    +  R    N +  I + F+K V ++A W+L  P              D   +  
Sbjct: 198 KR----EDGRLRQFNLSLLITEDFVKAVKEDAPWSLIFPYTAKEVEQDGIALDDPAQVLW 253

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            ++         +  +   KV++ + A  LW  ++T  ++   P     D  N  +    
Sbjct: 254 ADWPNKEGVVFNELGQVACKVYKTMPARKLWNVIMTSTYDYAEPGFILIDKVNQMNNNWF 313

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630
              + ++N C E  L         C LGS+NL     +       FD+      +    R
Sbjct: 314 CEEIRATNPCGEQPLPPY----GACLLGSVNLTKFVRDPFTESAAFDWQAFRKVVAIFTR 369

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           +LDNV++IN   + K ++     R  G+G +G  S L +L I Y S  +V   ++  + +
Sbjct: 370 MLDNVVEINQLPLAKQREEITAKRRHGMGFLGLGSTLTMLQIKYGSAASVAFTEQVSQEL 429

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVRDELAMNRTSR 743
           +      S+ LA+E+G     +      G           D I +  +V+ ++   R SR
Sbjct: 430 AMTGWQESLRLAKEKGPAPIMEQEFEVTGKMLRLRPEMAADGIKVGDKVKGKVLHARYSR 489

Query: 744 LPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795
                      L   +  +G R ++  +IAPT TI+       S  I+PS+ + Y ++ +
Sbjct: 490 YMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVI 549

Query: 796 S---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                    V+ +    L  R+L + A               +     L     TA +I 
Sbjct: 550 KPGKKSKESVDVYSFELLAYRELVNPAATPY----------ADDEASRLPDYFITADDIS 599

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           P   ++  +  Q WID + S    +  +   ++   IY  A   GLK     R
Sbjct: 600 PAQHVDIQAAAQHWIDSSISKTANVPTDFPFEQFKDIYMYASDSGLKGCTTFR 652


>gi|299532605|ref|ZP_07045994.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni S44]
 gi|298719408|gb|EFI60376.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Comamonas testosteroni S44]
          Length = 797

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 149/674 (22%), Positives = 248/674 (36%), Gaps = 87/674 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356
            +L ++Y    +G + E  Q  F RVA  LA  E    +     +F   L          
Sbjct: 12  DVLAEKYLA--DGEQSE--QELFARVARALAAVEKPELQTHWEQQFLANLQRGAIGAGRI 67

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
                      L +CF+  V D   G         + AL + A   +  GG+G D++ +R
Sbjct: 68  MAAAGLDTKATLINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GTN  + G   F+ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 128 PRGALVRGTNSFASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  +   FM+ V  +A W L      S+     G             
Sbjct: 188 KG----RWNNFNVSVGVSSAFMQAVRDDAEWELIHVASPSEAQIQAG-----------AH 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                + V++   A ALW  ++   ++   P I F D  N  +   +   + ++N C E 
Sbjct: 233 RRDDGLWVYKSQPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQ 292

Query: 589 TLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L         C+LG + L             FD +   + +   VR+LDNV+D     +
Sbjct: 293 PLPPY----GCCDLGPVILTRFVREAFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPL 348

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + ++     R IG+G  G   AL LL + YAS   ++ A      +   A +ASVELA+
Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAR 408

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+GA+  F    +                      +  ++    EL+  +K  G+RNS+ 
Sbjct: 409 EKGAFPLFNAKQY--------------------LKSGFAKRLPKELRATIKKHGLRNSHL 448

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKS----NMSGDFTVVNSFLVNELKQRDLWD 817
           ++IAPT T++       S  I+P++   Y +     N    F  V        K      
Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRKKRTANGGEQFYTVQDHAYRLYKAL---- 504

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                          + + +P  L +   +A E+     +      Q +ID + S  + +
Sbjct: 505 ---------------HGDDVP--LPECFVSALELSASEHVAMMRCVQPFIDTSISKTVNI 547

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PVTDPNSST 935
             +   +    +Y + W +GLK     R         ST                  +S 
Sbjct: 548 PADYPFEDFKHLYMECWEVGLKGCATYRPNDTLGAVLSTDSAPAPSQAPTGKSQAAINSL 607

Query: 936 HSLGIPSSCTSDTE 949
            S G+ +      E
Sbjct: 608 SSSGMTAVIERRPE 621


>gi|168491100|ref|ZP_02715243.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574524|gb|EDT95052.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pneumoniae CDC0288-04]
          Length = 719

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  LA  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKDLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|289642421|ref|ZP_06474567.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia symbiont of Datisca glomerata]
 gi|289507766|gb|EFD28719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia symbiont of Datisca glomerata]
          Length = 976

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 119/650 (18%), Positives = 230/650 (35%), Gaps = 66/650 (10%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G      + E    E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 119 GYFASPADAEIFEHELTWMLLHQVFSFNSPVWFNVGTPAPQQVSACFILAVDDTMESILN 178

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 179 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 237

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485
           + A    L+  H D+ +F++ +    +  R                   +  + N +  +
Sbjct: 238 RAAKMVVLDVDHPDIVDFVETKSREENKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 297

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM+ V  +A + L +                           R + +    + A  L
Sbjct: 298 TDEFMRAVIDDADFDLRA---------------------------RLDGRTIETVRARTL 330

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           +R +    ++   P I + D  N        G + +SN C+E        + + CNL S+
Sbjct: 331 FRSIAQAAWDCADPGIQYDDTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASL 386

Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           NL+     +  FD D   + +   +  +D  I        +  +     R +G+G     
Sbjct: 387 NLMKFLRKDLSFDADAFVAAVELIITAMDISICFADFPTPEITRVTRMFRQLGIGYANLG 446

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + L      Y S     +       ++  A   S E+A   GAY  F  +          
Sbjct: 447 ALLMATGHAYDSEGGRAMGAAITSLMTATAYRRSAEIAAALGAYDGFARNTDAHRRVIRK 506

Query: 725 SIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  VR    D+  +   +   W+  +   +  G RN+    + PT TI       +
Sbjct: 507 HAAATDAVRTVGVDDARVLAVAAREWERAQSVGEKHGWRNAQVSLLPPTGTIGLAMDCDT 566

Query: 780 QSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836
             I+P    + +K  + G    +VN  +   L+     +E + + ++Y    G + +   
Sbjct: 567 TGIEPDLALVKMKKMVGGSSMRIVNQTVPAALRALGYAEETIEAIVEYIAEHGHVIDAPG 626

Query: 837 IPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892
           +  +  ++   A     I PM  I   +  Q ++  A S  + +    + ++++ IY + 
Sbjct: 627 LRREHYEVFDCAIGERAITPMGHIRMMAAVQPFLSGAISKTVNMPTSATVEEVEQIYLEG 686

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           W +GLK     R         S L+G     +        +   +     
Sbjct: 687 WRLGLKALAIYRDNCKVGQPLSDLRGAKRSASGGAGEQTAAQPATAPSGE 736


>gi|306829460|ref|ZP_07462650.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC
           6249]
 gi|304428546|gb|EFM31636.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC
           6249]
          Length = 719

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 157/712 (22%), Positives = 286/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  L+  +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKIDYLIEHNYIETAFIKKYRPEF-LEELSQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y S E+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFRDVFIPTAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LREKVQANGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|325690075|gb|EGD32079.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK115]
          Length = 719

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 164/719 (22%), Positives = 280/719 (38%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  E     IEE    +   E      +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL  +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELCDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|322412097|gb|EFY03005.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 719

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 166/728 (22%), Positives = 289/728 (39%), Gaps = 89/728 (12%)

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
           V  + LL K  +E L   + +           +  +       + +++  + +   +F +
Sbjct: 22  VGGKILLHK-DKEALEAFFTENVLPNTMSFTSVTEKIEYLISNDYIESAFIQKYRPEF-I 79

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKE 336
             LA+ +K E      ++     Y +Y L  N     +E  +   M  A+  A      E
Sbjct: 80  TELADVIKTENFQFKSFMAAYKFYQQYALKTNDGDYYLESLEDRVMFNALYFA---DGNE 136

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
             A +    + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++
Sbjct: 137 TLAKDLAIEMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSR 196

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +
Sbjct: 197 IGGGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVF 256

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP    ++   YG
Sbjct: 257 HPDIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYG 313

Query: 516 KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
             F                K+ +  I A  L  ++  +  E+G+P+I   D  N  +P  
Sbjct: 314 IPFNYLDITNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI- 372

Query: 575 HVGVVHSSNLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLA 622
             G +  SNLC+EI    +                  CNLGS N+L    +         
Sbjct: 373 -DGKIIMSNLCSEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSP-----DFG 426

Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +I+T  R L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E
Sbjct: 427 RSIKTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIE 486

Query: 682 IADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEV 732
             D     +++  +  S  +A+ER   +  F  S +  G +    I         L+ ++
Sbjct: 487 FTDIYFMLMNYWTLVESNNIARERQTTFVGFDKSKYADGTYFDKYITGQFVPKSDLVKDL 546

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                + + S   W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +
Sbjct: 547 FKNHFIPQAS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEER 604

Query: 793 -SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G                                       +  D    + +A+++
Sbjct: 605 QEKKIGKIYYP-------------------------------ANGLSTDTIPYYTSAYDM 633

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGL 897
           D   +I+  +   + +DQ  SL L+L                 + + L  +   A+  G+
Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGI 693

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 694 KSIYYIRT 701


>gi|253995423|ref|YP_003047487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera mobilis JLW8]
 gi|253982102|gb|ACT46960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylotenera mobilis JLW8]
          Length = 721

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 133/659 (20%), Positives = 264/659 (40%), Gaps = 59/659 (8%)

Query: 321 FMRVAMGL---ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFL 373
           ++RVA  L      E ++ +   +F   L       +     N+G    +      +C +
Sbjct: 51  YLRVARALADVETTEEKRAEWHEKFLWALRRGAI-PAGRITSNAGALEHKPATSTINCTV 109

Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + V  D +  I G + E  +  K   G+G +++ +R  GA + G    + G + F+ + +
Sbjct: 110 SGVISDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYD 169

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                V+  G R+GA  A  +  H DV +F+  ++    +  R    N +  I   FM+ 
Sbjct: 170 KMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKR----ENGRLRQFNLSCLITKEFMEA 225

Query: 493 VTQNAGWTLFSPDE----------VSDLHDLYGKEF--EIAYENYERQADRGEI--KVFR 538
           V  +A W L  P            V+D   +  +E+  +  Y       D G++  +V++
Sbjct: 226 VKADAEWKLAFPVTEKESIIDNLNVNDESQVVWREWPIKGKYLTKTDGVDAGKVACRVYK 285

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  LW  +++  ++   P     D  N  +       + ++N C E  L        
Sbjct: 286 TIKARRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPPY----G 341

Query: 599 VCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C LGS+NL             FD+ +    +    R+LDNV++IN   +++ +      
Sbjct: 342 ACLLGSVNLTRFVKKPFTDEAYFDWKEYREVVAIFTRMLDNVVEINGLPLQQQRDEIMRK 401

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R  G+G +G  S+L ++ + Y   ++++  +E    ++    S  V+LA+E+GA      
Sbjct: 402 RRHGMGYLGLGSSLTMMKMKYGEEDSIKFTEEVTRVMAEEGWSVGVQLAEEKGAAPIMDE 461

Query: 714 -------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNC 763
                   L  +     D I +  ++  ++ + + SR      + L+ ++ T G+R ++ 
Sbjct: 462 KFEITADMLAKRPEMAADGIKVGQKIAGKVLLGKYSRYMQQFPEGLRNQIATKGVRFTHH 521

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
            +IAPT TI+       S  I+PS+ + Y ++ +               ++ D++   ++
Sbjct: 522 SSIAPTGTISLSLANNASNGIEPSFAHHYARNVI--------REGKKSKEKVDVFSYELL 573

Query: 822 SDLKYHDGSIGNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
           +  +  + +       P++ L      +  I     ++  +  QKWID + S  + +  +
Sbjct: 574 AYRELINPNAMPFSDKPEEQLPDYFLDSSTIMAKAHVDIQAASQKWIDSSISKTINVPTD 633

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS-ATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
              +    IY  A+  GLK     R    A      T K ++       + D       
Sbjct: 634 YDFEDFKNIYLYAYDKGLKGCTTFRFNPEAFQGVLVTEKDLESTTYKFTLEDGTEIEAK 692


>gi|312867246|ref|ZP_07727456.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parasanguinis F0405]
 gi|311097375|gb|EFQ55609.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parasanguinis F0405]
          Length = 719

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 157/712 (22%), Positives = 283/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +         ++   + +   +F L  LA  +K + 
Sbjct: 32  KEALDAFFKENVVPNTKAFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE++E        +++  +  
Sbjct: 443 SHIVAVPTIDHGNKLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +               + E+  ++ +       W E
Sbjct: 503 SNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPSA--EDWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  +    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|327489433|gb|EGF21226.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sanguinis SK1058]
          Length = 719

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 158/719 (21%), Positives = 281/719 (39%), Gaps = 86/719 (11%)

Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
           L +  E L   +K+  +    +   +  +      E  ++   +     ++ +  L   +
Sbjct: 28  LHKDQEALKAFFKENVEPNTKQFSSITEKIKYLLEENYLEKEFIELYSPEY-IEELTAFI 86

Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             + DF F  ++     Y++Y L  N     + ++   RV           E  A +  N
Sbjct: 87  HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +    E
Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380

Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI                       CNLGS N++    +          +IRT  R 
Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  +   +      N      GLG MG  S L    I Y S EAVE        +
Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S  +A+ER   + +F+ S +  G +    +          + E+   + +   
Sbjct: 496 NYWTLVESNNIARERRVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
               W EL+ ++K  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G   
Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  +    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   + +DQ  SL L++               + + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|307709352|ref|ZP_07645810.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK564]
 gi|307619935|gb|EFN99053.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           mitis SK564]
          Length = 719

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 157/715 (21%), Positives = 283/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE+        +      L  L+  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEQNYIETAFIKKYRPEFLEELSQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + ++   RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVQVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|215428499|ref|ZP_03426418.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T92]
          Length = 701

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 162/672 (24%), Positives = 273/672 (40%), Gaps = 72/672 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDFIYRQAWLMG 896
           ++     AW  G
Sbjct: 655 VNKAQIYAWAQG 666


>gi|309800431|ref|ZP_07694592.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           infantis SK1302]
 gi|308115947|gb|EFO53462.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           infantis SK1302]
          Length = 719

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 159/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L   +K + 
Sbjct: 32  KEALEAFFKENVVPNTMVFNSITDK-INFLIEHNYIETAFIKKYRPEFLEELHQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSKAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGVTFHNFEKSDYANGSYFDKYLTDEFLPKSDRVKELFKDIFIPTAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  +    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|163791217|ref|ZP_02185633.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
 gi|159873487|gb|EDP67575.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
          Length = 727

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 166/696 (23%), Positives = 285/696 (40%), Gaps = 89/696 (12%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     IEE               +  L +D+ Y R F F  ++     Y +Y L  N 
Sbjct: 60  DEKLNYLIEEDYIEEEFLLKYDREFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTND 118

Query: 312 --SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQL 368
               +E  +    R+            K A    + + +  +  +TPT  N+   R  +L
Sbjct: 119 GERFLERYED---RIVFNALYLADGDTKLASRLADEIVNQRYQPATPTFLNAGRKRRGEL 175

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL    DD+  I   +     L++  GG+G + + +R  G  I   +  S GV+P +
Sbjct: 176 VSCFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVM 235

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD 
Sbjct: 236 KLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDK 295

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F +    +    LFSP +V  ++      +    + Y+   +  EI+  + ISA  L  +
Sbjct: 296 FYELAAHDEQMYLFSPYDVERIYGE-PFAYIDITKEYDNMVNNEEIRKSK-ISARELENE 353

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  +  E+G+P+I   D  N  +P    G +  SNLC+EI                    
Sbjct: 354 ISKLQQESGYPYIINVDTANRENPVY--GTITMSNLCSEILQIQEPSLINNDQTYEHLGT 411

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS N++    +          +I T VR L  V D  +   +   K  N  +  
Sbjct: 412 DISCNLGSTNIVNLMKSPN-----FGQSIDTMVRALTMVTDQSSIDAVPSIKNGNDRYHT 466

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG MG  + L L  I Y SPE+VE  D   + ++++ + +S ++A+ER   + +F+ S
Sbjct: 467 IGLGAMGLHTFLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERGTTFYNFEKS 526

Query: 715 LWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +    I          +  + D + +       W  LK+ V + G+ + N +A+
Sbjct: 527 KYANGTYFDKYINENFVFSSEKVQHLFDGIQVPTI--EDWAALKEAVMSDGLYHQNRLAV 584

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT +I+ +   S S+ P  + +  +    +G       FL N+                
Sbjct: 585 APTGSISYVNETSSSLHPITRLIEERQEKKTGKTYYPAPFLSND---------------- 628

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-------- 877
                              + +A+++D   +I+  +  QK IDQ  SL L+L        
Sbjct: 629 ---------------TMPYYKSAYDMDMRQVIDVYAAAQKHIDQGMSLTLFLRSEIPEGL 673

Query: 878 --------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
                    + + + L+ +   AW  G+K+ YY+R+
Sbjct: 674 YEWKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRT 709


>gi|269102468|ref|ZP_06155165.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162366|gb|EEZ40862.1| ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 716

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 62/655 (9%)

Query: 293 FEYLGLQILYDRYF--LHINGSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSS 348
           F+   ++I   +Y        +        F RVA  L+  E  K       EF   L +
Sbjct: 18  FQPTSIEIWNSKYRLKSKYGDAIDLTLDDTFKRVAKALSALEKPKLQQHWYQEFLWALRN 77

Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGND 403
                +     N+G    +      +C ++ +  D +  I   + E  +  K   G+G D
Sbjct: 78  GAI-PAGRITSNAGAFEHKPATSTINCTVSGIIEDSMDDILAKVHEAGLTLKAGCGIGYD 136

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA + G    + G + F+ + +     V+  G R+GA    ++  H D+ EF+
Sbjct: 137 FSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDVRHPDIIEFI 196

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDL 513
             ++    +  R    N +  I + F++ V Q+  W L  P           +V +   +
Sbjct: 197 RAKR----EDGRLRQFNLSLLITEEFIEAVKQDLSWQLIFPMTAKEIAQDGIDVDNDETM 252

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              ++    +  E    +   K++R + A  LW  ++T  ++   P     D  N  +  
Sbjct: 253 VWADWPTTTDLIENDLGQVACKIYRTLPARNLWNIIMTSTYDYAEPGFILIDKVNQMNNN 312

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTA 628
                + ++N C E  L         C LGS+NL             FD+ +    +   
Sbjct: 313 WFCEDIRATNPCGEQPLPPY----GACLLGSVNLTKFVRYPFTEQAEFDWKEFRKVVAIF 368

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   +EK +      R  G+G +G  S L +L   Y S  +V   ++   
Sbjct: 369 TRMLDNVVEINHLPLEKQRHEIENKRRHGMGFLGLGSTLTMLRHQYGSAASVAFTEQVAL 428

Query: 689 FISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            ++      ++ELA+E+G+    +         L  +     D   L  +V+  +   + 
Sbjct: 429 ELAVVGWQQALELAKEKGSAPIMEQEFEVTAKMLRQRPEMHDDGYELGDKVKGRILHAKY 488

Query: 742 SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL  ++   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 489 SRYMQQLAEVEPELVTQLMETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRN 548

Query: 794 NM-SGDFTV--VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            + +G  T   V+ +    L  R+L ++  +      D            L     TA +
Sbjct: 549 VIVAGKKTKESVDVYSYELLAYRELINDKAMPYSTEPD----------AMLPDYFITADD 598

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           I P   +E  +  Q+WID + S    +    + +    IY  A+  GLK     R
Sbjct: 599 ITPSQHVEVQAAAQRWIDSSISKTANVPTNFAFESFKDIYMDAYDKGLKGCTTFR 653


>gi|237626477|gb|ACR02999.1| UL39 [synthetic construct]
          Length = 822

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 162/698 (23%), Positives = 284/698 (40%), Gaps = 67/698 (9%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           E V     + + ++ D++     +            L+  Y+ Y + +   + E    FF
Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201

Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           +R+A   A + + K+                   F+  L++  F+ STP +   G     
Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261

Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            +SC+L      +    +    ++        GG+G     + G             G++
Sbjct: 262 TASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484
             +KV +   +A N    R   +C YLE WH D+   L++R     ++ RR  ++  A W
Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370

Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
             DL  KR  ++                S L  L+ +EFE  YE  E      E      
Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598
           I    +   ++     TG P+I FKD CN        G  +  SNLCTEI   + +    
Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485

Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           VC+L SINL     N     QFD+D L   +R A   ++ +++ +    EK+      +R
Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           ++G+G+ GF +A   + +      A  +     EF+   A++ S E  +     ++ F  
Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S + +G    D             +   +   W+ L+ R+ + G+ N+  +A+ PTA  A
Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829
            +  VS+   P + N++ K   +G+    N  L+ EL+   L +E    A I+ L+  + 
Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716

Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882
           +I        +   +  + TAF+ D   LI+  S R  + DQ+QS+ L++ E +      
Sbjct: 717 NIQTALGNKPECHSLLKYKTAFDYDQALLIDLCSDRAPFADQSQSMTLFITETADGTLLA 776

Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
            ++  +   A+  GLKT  YY + R AT+       G 
Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNAGVFCGDGE 814


>gi|254785736|ref|YP_003073165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Teredinibacter turnerae T7901]
 gi|237684341|gb|ACR11605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Teredinibacter turnerae T7901]
          Length = 719

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 126/618 (20%), Positives = 250/618 (40%), Gaps = 57/618 (9%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVP 377
           RVA  L+  E  K     + +        + +   + N+G +  +      +C ++ T+ 
Sbjct: 60  RVAKALSSVEKSKRAHWEKEFIWALDNGAIPAGRIISNAGAQEYKPATSTINCTVSGTIN 119

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D ++GI     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +     
Sbjct: 120 DSMHGILEKNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIFDKMCFT 179

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V+  G R+GA  A  +  H DV++F+  ++    +  +    N +  I D F++ V ++ 
Sbjct: 180 VSSAGGRRGAQMATFDVHHPDVQDFIRAKR----EDGKLRQFNLSLLITDDFIRAVKEDT 235

Query: 498 GW----------TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            W              P +++D   +  +      +    +      ++++ I A  LW 
Sbjct: 236 DWALSFPLSQRDMEHKPVDLNDSTQVVWRRVPAKDKYITNEEGLTACRIYKSIPAKRLWN 295

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           ++++  ++   P     D  N ++       + ++N C E  L         C LGS+NL
Sbjct: 296 QIMSSTYDFAEPGFILIDRVNDQNNNWFCENIRATNPCGEQPLPPY----GSCLLGSVNL 351

Query: 608 LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                        F+++K    +    R+LDNV++IN   +E+ +      R  G+G +G
Sbjct: 352 TVFVEEPFTENARFNWEKYRKVVAIFTRMLDNVVEINGLALEQQRDEITRKRRHGMGFLG 411

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGSL 715
             S L LL IPY S  ++   ++    ++       + LA+E+G        Y   +  L
Sbjct: 412 LGSTLALLRIPYGSSASIAFTEQVSRELAITGWREGLSLAKEKGMAPALADEYDVTEAML 471

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIAPT 769
             +     D +    +V+  +  +R S           +L   +   G R ++  +IAPT
Sbjct: 472 RMRPAMAADGLKAGDKVKGSVLFSRYSNYMSKLAEEDPQLLADLAEHGCRFTHHSSIAPT 531

Query: 770 ATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            TI+       S  I+PS+ + Y ++             + E K+     +    +L  +
Sbjct: 532 GTISLSLANNASNGIEPSFAHHYSRNI------------IREGKKSKEKVDVFSYELLAY 579

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
              + + E  P DL +   +A  + P   ++  +  QKW+D + S  + +    S +   
Sbjct: 580 R-HLIDAEAGPSDLPEYFVSADSVAPSQHVDVQAAAQKWVDSSISKTINVPTNISYEAFK 638

Query: 887 FIYRQAWLMGLKTTYYLR 904
            IY  A+  GLK     R
Sbjct: 639 DIYLYAYDQGLKGCTTFR 656


>gi|302557997|ref|ZP_07310339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces griseoflavus Tu4000]
 gi|302475615|gb|EFL38708.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces griseoflavus Tu4000]
          Length = 964

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/645 (17%), Positives = 227/645 (35%), Gaps = 70/645 (10%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWIPDLFMKRVT 494
             H D+E+F++ +    +  R                   +  + N +  + D FM+ V 
Sbjct: 243 VDHPDIEDFIETKVKEEEKIRVLRDAGFDMDLGGDDIASVQYQNANNSVRVNDEFMQAVE 302

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           Q   + L +                               +V  ++ A AL+R++    +
Sbjct: 303 QGGKFGLRARMT---------------------------GEVIEEVDAKALFRRLAEAAW 335

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612
               P I +    N        G + +SN C+E        +   CNL S+NL+      
Sbjct: 336 ACADPGIQYDGVINNWHTCPESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDD 391

Query: 613 ---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N  F+ ++    +   +  +D  I       +K  ++    R +G+G     + L  
Sbjct: 392 GLGNQSFETERFQKVVELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMA 451

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG-- 727
               Y S     +A      ++  A   S ELA   G Y  +  +               
Sbjct: 452 TGHAYDSDGGRALAGAITSLMTGTAYRRSAELAAIVGPYDGYARNADAHQRVMRQHADAN 511

Query: 728 --LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784
              +     +  +   +   W ++ +  +  G RN+    +APT TI       +  ++P
Sbjct: 512 GTAVRMDDLDTPVWAAATEAWQDVVRVGEKNGFRNAQASVLAPTGTIGLAMSCDTTGVEP 571

Query: 785 SYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDL 841
               + + K    G   +VN  +   L++    +E + + +     +G++ +   +  + 
Sbjct: 572 DLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAPGLKQEH 631

Query: 842 KKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
            ++   A     I PM  +   +  Q WI  A S  + +    + ++++ IY +AW +G+
Sbjct: 632 YEVFDCAMGERAISPMGHVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYFEAWKLGV 691

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K     R         S       K       +         +  
Sbjct: 692 KALAIYRDNCKVGQPLSAKTKEKEKAEVTEKAEETIRAAVEKVVE 736


>gi|121611904|ref|YP_999711.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verminephrobacter eiseniae EF01-2]
 gi|121556544|gb|ABM60693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verminephrobacter eiseniae EF01-2]
          Length = 813

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/650 (21%), Positives = 244/650 (37%), Gaps = 87/650 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSS 348
           D   + +   +L ++Y            Q  + RVA  LA  E  + +   E  +     
Sbjct: 10  DLGLQPISQDVLCEKYLKPGET----TAQMLYQRVARALASVEAPELRSRYEALFLANLQ 65

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGG 399
              + +   +  +GT     L +CF+  V D + G        I+ AL+E A   +  GG
Sbjct: 66  AGAIGAGRIMSAAGTDIQATLINCFVQPVGDCIQGQDEDGFPGIYEALREAAETMRRGGG 125

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G D++ +R  GA +  T   + G   ++ V + +   V   G R+GA    L   H DV
Sbjct: 126 VGYDFSRIRPKGARVMATASMASGPCSYMNVFDQSCATVESAGARRGAQMGVLRIDHPDV 185

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
            EF+  ++  G    R ++ N +  +PD F++ +  +A W L             G    
Sbjct: 186 HEFISAKRQPG----RWNNFNVSVSVPDAFIQALQDDAAWDLVHKARPGAALLAQG---- 237

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                           V+  + A ALW +++   ++   P I F    N  +   +   +
Sbjct: 238 -------AHQRADGQWVYASVPARALWERIMRSAYDYAEPGILFLGRINEDNNLHYCETI 290

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVL 632
            ++N C E  L +       C+LG + L     +         FD++  A  +   VR L
Sbjct: 291 TATNPCGEQPLPAY----GCCDLGPVILPRFVRHPFGFGGAAAFDFEAFAQAVALQVRAL 346

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           DNV+D+    + + ++     R IG+G  G  + L +L + Y  PE   +A      +  
Sbjct: 347 DNVLDLTYWPLPQQREEAMAKRRIGVGFTGLGNTLAMLCLRYDRPEGRAMAVRIARCMRD 406

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            A  ASV+LA+E+GA+  F    +                   LA  R +    + LK  
Sbjct: 407 AAYRASVDLAREKGAFPHFSAGPY-------------------LAEGRFASRLPEALKAA 447

Query: 753 VKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDF----TVVNSFL 806
           ++  G+RNS+ ++IAPT T++       S  I+PS+   Y +   + D       V    
Sbjct: 448 IRQHGIRNSHLLSIAPTGTVSLAFADNASNGIEPSFAWTYKRKKRAADGGSTEYAVQDHA 507

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
               ++                G    +            +A ++     I      Q W
Sbjct: 508 WRLYRELG--------------GDAQALP-------DYFVSALDMPVQAHIAMMEAVQPW 546

Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +D A S  + +  +   +    +Y QAW   LK     R  +       T
Sbjct: 547 VDTAISKTVNIPVDYPYEDFKDLYLQAWRARLKGLATYRPNAILGAVLET 596


>gi|254482169|ref|ZP_05095410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [marine gamma proteobacterium HTCC2148]
 gi|214037494|gb|EEB78160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [marine gamma proteobacterium HTCC2148]
          Length = 707

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 132/674 (19%), Positives = 265/674 (39%), Gaps = 59/674 (8%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E E  +++    F   L       +   + N+G +  +      +C ++
Sbjct: 50  YARVARALAEVEDETVRQEWEQRFVWALKRGAI-PAGRIVSNAGAQEHKPSTSTINCTVS 108

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            ++ D + GI     E  +  K   G+G +++ +R  GA + G    + G + F+ + + 
Sbjct: 109 GSITDSMEGILQKNLEAGLTLKAGCGIGYEFSTLRPRGAFVSGAGAYTSGPMSFMDIFDK 168

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA  A  +  H DV +F+  ++    +  R    N +  I + F+  V
Sbjct: 169 MCFTVSSAGGRRGAQMATFDVHHPDVFDFVKAKR----EDGRLRQFNLSLLITEDFINAV 224

Query: 494 TQNAGWTLFSPDEVSDLHDL--------YGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            ++  W L  P    +  +L          + F +       +  +   +V+++I A+ L
Sbjct: 225 KEDGEWPLSFPVTPKEFANLELDPEQEVVWRSFPVTDGYVTNEQGQVACRVYQRIRAIKL 284

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  +++  ++   P     D  N ++       V ++N C E  L         C LGS+
Sbjct: 285 WNAIMSSTYDYAEPGFILIDEVNKKNNNWFCENVRATNPCGEQPLPPY----GSCLLGSV 340

Query: 606 NLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+++    +    R+LDNV++IN   +E+ ++   + R  G+G 
Sbjct: 341 NLTRFVREPFTDKAHFDWEEYREVVAVFTRMLDNVVEINGLPLEQQRQEITSKRRHGMGF 400

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           +G  S L +L + Y   +++E  +E  + ++       ++LA+E+GA           G 
Sbjct: 401 LGLGSTLTMLQMKYGEEDSLEFTEEVSKQMAVSGWKIGLDLAREKGAAPIMDEEFEVTGE 460

Query: 721 F-------PIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
                     D I L  ++  ++  ++ S           EL   +   G R ++  +IA
Sbjct: 461 MLRRRPEMAADGIKLGDKLPGKVLHSKYSHYMQALALEEPELVNSIIQEGARFTHHSSIA 520

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++ +               ++ D++   +++  +
Sbjct: 521 PTGTISLSLANNASNGIEPSFAHHYSRNVI--------REGKKSKEKVDVFSFELLAYRE 572

Query: 826 YHDGSIGNI-ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
             +G    + +     L      +  + P   ++  S  QKW+D + S  + +  +   +
Sbjct: 573 LVNGDAMPLTDDESKKLPDYFIASDNVTPRQHVDVQSAAQKWVDSSISKTINVPTDCPYE 632

Query: 884 KLDFIYRQAWLMGLKTTYYLR-----SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
                Y  A   GLK     R     S+     E+            +     + +T  L
Sbjct: 633 DFKDTYLYAAEQGLKGCTTFRFIPEASQGVLMKEEDWRTLTISSPLRMAPRLNSRATKKL 692

Query: 939 GIPSSCTSDTECEV 952
            +   CT    C +
Sbjct: 693 SMTGRCTPQPTCSM 706


>gi|208401181|gb|ACI26682.1| UL39 [Anatid herpesvirus 1]
          Length = 810

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 157/595 (26%), Positives = 255/595 (42%), Gaps = 48/595 (8%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGG 399
           F+  LSS   + +TP +   G      +SC+L       +   +   L E A + +  GG
Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDTVRSILNEVAPILQSRGG 280

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G     +          N +S+G++  LK+ +   +A+N    R   VC Y+E WH D 
Sbjct: 281 VGIALHTLN--------QNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHADT 332

Query: 460 EEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVT-----QNAGWTLFSPDEVSDLHDL 513
              L ++     ++  R   + +A W+PDL  KR       +      F  D  S+L  L
Sbjct: 333 RAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFDDRASNLSKL 392

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG  FE  YE YE      +      I    +   ++     TG P+I  KD  N     
Sbjct: 393 YGDRFEREYEYYESSGFGVD-----SIPIREMMYSIVRSAATTGSPFIVLKDAFNRHYHL 447

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRT 627
                 +  SNLCTEI   +  +   VCNL SINL      ++     FD   L   +RT
Sbjct: 448 DTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRAVRT 507

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A   ++ ++  N +  EK++     HR+IG+GL G  +    L +     EA ++     
Sbjct: 508 ATIFVNAMMLCNDYPTEKSRAGMERHRSIGVGLQGLHTTFLRLGLDMVCDEARKLNKRIA 567

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           E +   A++ S EL +     +S F  S++  G F  D             +  T +  W
Sbjct: 568 ELMLLEAMTTSCELCEHGLPKFSDFDESIYSSGRFHFDGWE---------DVELTEQYEW 618

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           DEL++RVKT G+ NS  +A+ PT + + +  VS+   P + NL+ K + +G+    N  L
Sbjct: 619 DELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRPNPLL 678

Query: 807 VNELKQRDLWDEAMISDLKY---HDGSIGNIERIPDDLKKI--HATAFEIDPMWLIESAS 861
           + EL+     ++  +  L+       S         +   +  + T FE + + L+    
Sbjct: 679 MEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMKYKTVFEYNQIDLLNMCR 738

Query: 862 RRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++D +QS +LY+ E S        +  +   A+  GLKT  YY R R AT+
Sbjct: 739 DRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKATN 793


>gi|26553538|ref|NP_757472.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           penetrans HF-2]
 gi|26453544|dbj|BAC43876.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma
           penetrans HF-2]
          Length = 725

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 166/708 (23%), Positives = 297/708 (41%), Gaps = 77/708 (10%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY------LANDLKYE 288
                      +    + P +      +     L  E+  DF++        L +  +  
Sbjct: 37  QFENDLLAVEKYLETEIKPNFKKFNSIKEKLEYLFLENYYDFNVFKKYSSSFLISIFEKA 96

Query: 289 RDFAF---EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
           + + F    ++G    Y  Y L    N +  E    F  R+     L     E+ A+ + 
Sbjct: 97  KTYNFRFSSFMGAMKFYTTYALKSFDNKTYFE---HFEDRIVCNALLFGRGNEQDALTYL 153

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + + +  +  +TPT  N+G +   +  SC+L  V D++  I  A      L+K  GG+  
Sbjct: 154 DEMMTGRYQAATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRATTTGLQLSKRGGGVAY 213

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R  GA I G   ++ G+IP +K+  D     NQ G+R+GA   YL  +H D+ +F
Sbjct: 214 CLTNLREFGAPIKGIKNQATGIIPVMKILEDVFSYANQLGQRQGAGAVYLNAFHPDILKF 273

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   ++    +PD+      +N    LFSP ++   +           
Sbjct: 274 LDSKRENADEKIRIKSLSLGVVVPDIAFHLARENKDMALFSPYDIQREYGK-PMSDISIT 332

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           E YE   +   I   + ISA  L++++  + FE+G+P+I F D  N ++   +   +  S
Sbjct: 333 EEYENLLNNPNITK-KYISARKLFQQIAEVQFESGYPFILFDDIANEKNSALNN-RIIMS 390

Query: 583 NLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLCTEIT                  E   CNLGS+N+         D      T++ A++
Sbjct: 391 NLCTEITQINTPSILNTDLTYEQLGEDVCCNLGSLNIAKVME----DGANFGKTVKYAIK 446

Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            LD++  + +  +    +  N  +RA+GLG M     L    I Y S EAV+  +     
Sbjct: 447 ALDSIAHLADLSSAPTIENGNSKNRAVGLGAMNLHGFLATNKIYYDSEEAVDFTNMFFYT 506

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDS-----------IGLLAEVRDELA 737
           +++HA  AS E A+E G  + +FK + +  G +                  + E+  E  
Sbjct: 507 MAYHAYKASNETAKETGFVFENFKNTKYADGSYFDKYTQCEENYWTPKTERVKELLKEYK 566

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +   ++  W +L + +K  G+ NS+ MA+APT +I+ +   + S+ P    + ++     
Sbjct: 567 LAIPTKQDWIQLTEDIKKFGLANSHLMAVAPTGSISYLSSCTPSLQPIVSPIEIRKEGKV 626

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
               V ++ +            + + + Y  G                  A+EI    +I
Sbjct: 627 GRVYVPAYKI-----------DVNNYMYYAKG------------------AYEIGVNPII 657

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  S  Q+ +DQA S+ L+L E  + + L+  Y  A+     + YY+R
Sbjct: 658 DICSAAQQHVDQAISMTLFLTENATTRDLNKAYIYAFNKKCVSIYYIR 705


>gi|330984035|gb|EGH82138.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 260

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 159/263 (60%), Positives = 204/263 (77%), Gaps = 5/263 (1%)

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           + HIPYAS  AVE AD+SME IS++AI AS +LA ERGAY+SF+GSLW QG+ P+DS  +
Sbjct: 1   MQHIPYASEAAVEFADKSMEAISYYAIQASCDLADERGAYASFQGSLWSQGILPLDSQEI 60

Query: 729 LAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           L   R    + ++++S L W  +++RVK  G+RNSN MAIAPTATI+NI GV+QSI+P+Y
Sbjct: 61  LIAHRGEQYIEVDKSSTLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVTQSIEPTY 119

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
           QNLYVKSN+SG+FTV+N  LV +LK R LWD  M+++LK++DGS+  I+R+P DLK ++A
Sbjct: 120 QNLYVKSNLSGEFTVINPHLVIDLKARGLWDAVMVNELKHYDGSVQQIDRVPQDLKTLYA 179

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           TAFE++  WLI+ ASRRQKW+DQAQSLNLY+   SGKKLD  YR AW  GLKTTYYLR+ 
Sbjct: 180 TAFEVEVRWLIDGASRRQKWLDQAQSLNLYIAGASGKKLDTAYRMAWYRGLKTTYYLRAL 239

Query: 907 SATSVEKSTLKGVDGKLNAVPVT 929
           +ATS EKST+    GKLNAV   
Sbjct: 240 AATSTEKSTIN--TGKLNAVSAQ 260


>gi|255683174|ref|YP_003084382.1| UL39 [Duck enteritis virus]
 gi|158343205|gb|ABW35295.1| ribonucleotide reductase subunit 1 [Anatid herpesvirus 1]
 gi|254839989|gb|ACT83535.1| UL39 [Anatid herpesvirus 1]
          Length = 810

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 157/595 (26%), Positives = 255/595 (42%), Gaps = 48/595 (8%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGG 399
           F+  LSS   + +TP +   G      +SC+L       +   +   L E A + +  GG
Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDTVRSILNEVAPILQSRGG 280

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G     +          N +S+G++  LK+ +   +A+N    R   VC Y+E WH D 
Sbjct: 281 VGIALHTLN--------QNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHADT 332

Query: 460 EEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVT-----QNAGWTLFSPDEVSDLHDL 513
              L ++     ++  R   + +A W+PDL  KR       +      F  D  S+L  L
Sbjct: 333 RAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFDDRASNLSKL 392

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           YG  FE  YE YE      +      I    +   ++     TG P+I  KD  N     
Sbjct: 393 YGDRFEREYEYYESSGFGVD-----SIPIREMMYSIVRSAATTGSPFIVLKDAFNRHYHL 447

Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRT 627
                 +  SNLCTEI   +  +   VCNL SINL      ++     FD   L   +RT
Sbjct: 448 DTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRAVRT 507

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A   ++ ++  N +  EK++     HR+IG+GL G  +    L +     EA ++     
Sbjct: 508 ATIFVNAMMLCNDYPTEKSRAGMERHRSIGIGLQGLHTTFLRLGLDMVCDEARKLNKRIA 567

Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           E +   A++ S EL +     +S F  S++  G F  D             +  T +  W
Sbjct: 568 ELMLLEAMTTSCELCEHGLPKFSDFDESIYSSGRFHFDGWE---------DVELTEQYEW 618

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
           DEL++RVKT G+ NS  +A+ PT + + +  VS+   P + NL+ K + +G+    N  L
Sbjct: 619 DELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRPNPLL 678

Query: 807 VNELKQRDLWDEAMISDLKY---HDGSIGNIERIPDDLKKI--HATAFEIDPMWLIESAS 861
           + EL+     ++  +  L+       S         +   +  + T FE + + L+    
Sbjct: 679 MEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMKYKTVFEYNQIDLLNMCR 738

Query: 862 RRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
            R  ++D +QS +LY+ E S        +  +   A+  GLKT  YY R R AT+
Sbjct: 739 DRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKATN 793


>gi|329116333|ref|ZP_08245050.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326906738|gb|EGE53652.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 719

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 151/714 (21%), Positives = 280/714 (39%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + +++  +        +  LA+ +K E 
Sbjct: 32  KEALQAFFEENVIPNTKPFASITKKIEYLLKHDYIESEFIS-KYSKEFIEELASIIKNEN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +   M  A+  A      E+ A      + 
Sbjct: 91  FQFNSFMAAYKFYQQYALKTNDGEYYLESLEDRVMFNALYFA---DGNEELAKSIAIEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYSVEKEYGI-PYNYIDITAMYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHV 576
                 +I   + I A  L  ++  +  E+G+P+I   D  N  +P             +
Sbjct: 327 ELVANPKITKTK-IKARDLETEISKLQQESGYPYIINIDTANKANPVDGKVIMSNLCSEI 385

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
             +   ++  +            CNLGS N+L    +         ++I+   R L  V 
Sbjct: 386 LQIQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGASIKAMTRALTFVT 440

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D      +   K  N      GLG MG  S L   HI Y SPE+VE  D     +++  +
Sbjct: 441 DSSQIEAVPTIKNGNQQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMNYWTL 500

Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPW 746
             S  +A+ER   ++ F+ S +  G +    +          + ++  +  + + S   W
Sbjct: 501 VESNNIARERQTTFTGFENSKYADGSYFDKYVTGKFVPQTDFVKDLFKDHFIPQAS--DW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
           + L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G        
Sbjct: 559 ETLRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP--- 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                          +  D    + +A+++D   +I+  +   +
Sbjct: 616 ----------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAAATQ 647

Query: 866 WIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSELPKELYEWKSESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|15600690|ref|NP_254184.1| NrdJa [Pseudomonas aeruginosa PAO1]
 gi|9951832|gb|AAG08882.1|AE004962_6 NrdJa [Pseudomonas aeruginosa PAO1]
          Length = 734

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  +E     F   L +     +   + N+G    +      +C ++
Sbjct: 68  WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV EF+  ++    +  R    N +  I D FM+ V
Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242

Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            Q+A W L  P  V         D + +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
            L  +     D       +R  +   + SR          EL + +   G R ++  +IA
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           PT TI+       S  I+PS+ + Y ++            L+ E ++     E    +L 
Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 586

Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879
            +   +    +    D    L     TA  + P   ++  +  QKW+D + S    +  +
Sbjct: 587 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHMDIQAAAQKWVDSSISKTANVPTD 646

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +    IYR AW  GLK     R
Sbjct: 647 YPFEDFKDIYRYAWHQGLKGCTTFR 671


>gi|288920762|ref|ZP_06415062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
 gi|288347838|gb|EFC82115.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
          Length = 1009

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 117/609 (19%), Positives = 221/609 (36%), Gaps = 28/609 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E + E    E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 110 GYFASEDDAETFEHELTWMLLHQVFSFNSPVWFNVGTSAPQQVSACFILAVDDTMESILN 169

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 170 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 228

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF++ +    D  R   D      +    +  V           
Sbjct: 229 RAAKMVVLDVDHPDIVEFVETKAREEDKIRALRDAGFDMDLGGRDIASVQYQNANNSVRV 288

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           ++      + G  F++          R + +V   + A  L+  +    +E   P I + 
Sbjct: 289 NDEFMRAVVDGTSFDLR--------ARLDNRVIESVDARGLFTTIAQAAWECADPGIQYD 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
              N        G + +SN C+E        + + CNL S+NL+     ++ FD +   +
Sbjct: 341 GTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASLNLMKFLRPDRTFDAEAFVA 396

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I        +       +R +G+G     + L      Y S     +A
Sbjct: 397 SVELIITAMDISICFADFPTPEITTVTRAYRQLGIGYANLGALLMASARAYDSEGGRSLA 456

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739
                 ++  A   S ELA   GAY  F  +                 VR    ++  + 
Sbjct: 457 AAITSLMTATAYRRSAELAGTVGAYDGFARNADAHRRVVRKHAAANDAVRAVHTEDARLI 516

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG- 797
             +   W+      +  G RN+    +APT TI       +  I+P    + +K  + G 
Sbjct: 517 AAASKEWERALSVGEKNGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGA 576

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATA---FEID 852
              +VN  +   L+     +E   + +      G + +   +  +  ++   A     I 
Sbjct: 577 SMKIVNQTVPAALRALGYPEETTEAIVEFIAEHGHVVDAPGLRPEHYEVFDCAIGDRAIS 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q ++  A S  + +    +   ++ IY + W +GLK     R       
Sbjct: 637 PMGHVRMMAAVQPFLSGAISKTVNMPSTATVADVEEIYLEGWRLGLKALAIYRDNCKVGQ 696

Query: 912 EKSTLKGVD 920
             + +KG  
Sbjct: 697 PLTDVKGAK 705


>gi|225351963|ref|ZP_03742986.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157210|gb|EEG70549.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 727

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 162/732 (22%), Positives = 282/732 (38%), Gaps = 88/732 (12%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           ++  + A   L    ++      K  Q    +  + + P        +   +RL+ +   
Sbjct: 23  DWHSLNAMLNLYD--KQGRIQFDKDIQAVREYVEKHVLPNTVRFNSTQDRLSRLIADGYY 80

Query: 275 D------FDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH--INGSRIEM-PQAFFM 322
           D      +D  +L    +   D  F    +LG    +  Y L        +E  PQ    
Sbjct: 81  DESVFAQYDAEFLDRFYRNVDDCGFEFDTFLGAFKFHRSYALKTFDGKQYLENFPQ---- 136

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381
           R A             A  ++  L S  F  +TPT  N G     +  SCFL  + D++ 
Sbjct: 137 RAAAVALALAAGDHAAAESYFEELISGRFQPATPTFLNLGKAQRGEAVSCFLVRIEDNME 196

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I   +     L+K  GG+    + +R  GA I     +S GV+P +K+  D+    NQ 
Sbjct: 197 SISRGINAALQLSKRGGGVALLLSNLREAGAPIKRIKHQSSGVVPVMKLLEDSFSYANQL 256

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +   ++    L
Sbjct: 257 GARQGAGAVYLNAHHPDIMHFLDTKRENADEKIRIKSLALGVVIPDITFELAKRHEPMAL 316

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPW 560
           FSP +V  +    G+ F     +   +    + ++ +  I A   +  +  + FE+G+P+
Sbjct: 317 FSPYDVERVM---GRPFADVSISENYRNMVDDERIGKTYIDAREFFMTLAELQFESGYPY 373

Query: 561 ITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           + F+D  N  +P             +  V   +   E    +       CNLGS+N+   
Sbjct: 374 MVFEDTVNRANPIDGRIAMSNLCSEILQVQEPSTYHEDLSYNHVGRDVSCNLGSLNIAKA 433

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                     L  T+  A+R L +V +  +   +   +++N    AIGLG M     L  
Sbjct: 434 MDG------DLGRTVERAIRALTSVSEHTDIACVPSIRRANDEGHAIGLGQMNLHGFLAR 487

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL 728
             I Y SPEA++  D     +++HA  AS ELA ERG  ++ F+ S + +     +    
Sbjct: 488 ESIMYGSPEALDFTDMYFMTVAYHAYRASHELAVERGTRFAGFERSAYAKPAGAGNYFDK 547

Query: 729 -------LAEVRDELAMNRTSR-------LPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                  LA    ++A     R         W  L+  +   G+ N    A+ PT +I+ 
Sbjct: 548 YTNGERSLAPKTGKIASLFARRGIHIPNEDDWRRLRDDIIRDGIFNQYLQAVPPTGSISY 607

Query: 775 ICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           I   + SI P    + ++     G       ++ N+                        
Sbjct: 608 INHSTSSIHPIASKIEIRKEGKIGRIYYPAPYMTND------------------------ 643

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                    +  A A+EI    ++++ +   + +DQ  SL L+  +  + + L+     A
Sbjct: 644 -------NLQYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATTRDLNKAQIYA 696

Query: 893 WLMGLKTTYYLR 904
           W  G+KT YY+R
Sbjct: 697 WRKGIKTLYYIR 708


>gi|29135242|ref|NP_803872.1| ORF306 [Pseudomonas phage phiKZ]
 gi|18996771|gb|AAL83207.1|AF399011_306 PHIKZ306 [Pseudomonas phage phiKZ]
          Length = 779

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 167/806 (20%), Positives = 294/806 (36%), Gaps = 86/806 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204
            I+  DGT  +++  ++    E A   L D V    V+ +  + + D  S  +L+  LI 
Sbjct: 21  TIIKLDGTEEAYSPAKINGWGEWAAQHLGDKVDWSSVVMDAVQALGDKTSSQELQLQLIE 80

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
               L  K  +Y  +  R     LR++          KA    M+               
Sbjct: 81  EC--LNRKTWSYYLMAGRLYAIYLRKKFYGLNGIPTVKALQTRMRK-------------- 124

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322
              ++       +   +   + ++ D    +  L  +  +Y       G   E  Q  +M
Sbjct: 125 DGIIVKLDYSSKEYAQIEKIIDHDLDLLCPHFSLHHIRGKYALRNRKTGQEYETAQFVYM 184

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           R+AM LA KE    +      +Y LLS+      TP   N GT+    +SC L    D+ 
Sbjct: 185 RMAMALAEKEPAETRMTHVENYYKLLSNKILSAPTPNYVNLGTKLRGFASCCLFASGDNG 244

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             +        ++ + S G+G +    R +G  I       QG  P++ V      A N 
Sbjct: 245 VSLAMGDYIANIMTQSSAGIGVNLM-TRSIGDPIRNGLIIHQGKKPYIDVIGKAVRA-NL 302

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF-MKRVTQNAGW 499
              R GAV  Y   +  + +    LR     + R+  D++ A      F  K   ++   
Sbjct: 303 QNGRGGAVTCYYSAFDPEADMITQLRNPRSTEDRKNRDLHYAFLSNKFFAKKAAQKDGMI 362

Query: 500 TLFSPDEVSDLHDLYG----KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554
            +F+P    DLHD +      +F   YE YE        K  +  ++A  L + ML   +
Sbjct: 363 FVFNPFTAPDLHDAFYSGDIDKFIKLYEKYEADP-----KFEKTYVNARDLLKSMLVEAY 417

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------SSEETAVCNLGS 604
           ETG  +    D  N  +P      ++SSNLC EI   +          SSE+     + +
Sbjct: 418 ETGTIYSAQIDELNHHTPF--KEPIYSSNLCLEIAEPTKPYYRMEDLYSSEDHGRGEIAT 475

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            +L A   +N  D          A++++D  I    +       +     + G+G+MG  
Sbjct: 476 CSLAAIAVDNVPDKQTYEMAAYYALKMIDYCILNAEYAFPHLALTAKNRMSAGVGIMGLA 535

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
           + +    + Y+S           E   +  I AS+++++ERG       + W +G  P  
Sbjct: 536 THMARAGLKYSSDAGKAEIHFIAERHMYFLIKASLKISKERGNAPWIHKTKWPEGWTPRK 595

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSID 783
           +     +    +        PWDEL+K +K   G+ +S   A  P    +   G +    
Sbjct: 596 TYNKSVDTI--IEGGFEELYPWDELEKEIKENGGIAHSVLAAYMPGEASSKALGSTNGPY 653

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P  + +  K++          +                                 DD   
Sbjct: 654 PVRRLILNKTDNGARVLWAAPY--------------------------------GDDDSY 681

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-----LDEPSGKKLDFIYRQAWLMGLK 898
           ++ +A++I    LI+  +  QKW DQ  S +LY      ++ S  ++   +      G+K
Sbjct: 682 VYESAYDIPTKDLIDCYAIIQKWTDQTISADLYRRIVGSEKISSNEMLGNHFYMVKRGMK 741

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLN 924
           T YY+   +A  ++  +L+      N
Sbjct: 742 TRYYVNLETAAGLDIKSLERAVEVTN 767


>gi|77414135|ref|ZP_00790301.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
 gi|77159805|gb|EAO70950.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
          Length = 722

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 170/724 (23%), Positives = 303/724 (41%), Gaps = 79/724 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           E     +        L +      +  +      ++     ++G    Y+ Y L    +R
Sbjct: 52  EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFTFLNFMGALKFYNAYALKTEDNR 111

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
             + + +  RV M         EK A +  + + +  F  +TPT  N+G +   +  SC+
Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+  +  L+K  GG+    T +R  GA I G   ++ G++P +K+  
Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
              N    LFSP    D+  +YGK         E +       + +  ISA  L++ +  
Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599
           + FE+G+P+I F+D  N ++P +  G +  SNLC+EI               +       
Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTGSQFSEDLTFTKVGHDVC 407

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSIN+         D++KL +    A+  +    D++  +    KKSN  + A+GLG
Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKSNAANHAVGLG 464

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +M     L   HI Y S EA++  D     ++++A  AS  LA+E+G +  F  S +  G
Sbjct: 465 VMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +         E +         E  +   S+  W +L + +K IG+ N++ +A+APT +
Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ +   + S+ P    + V+   +     V ++                          
Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618

Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
               +I  D    +   A+E+ P  +I  A+  QK +DQA SL L++ +  + + L+  Y
Sbjct: 619 ----KIDADNYVYYKKGAYEVGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAY 674

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            QA+     + YY+R R                     +    S    +    + +   +
Sbjct: 675 IQAFKQKCASIYYVRVR------------------QDILEGSESYDDDMLDDFTSSDLED 716

Query: 950 CEVC 953
           C+ C
Sbjct: 717 CQSC 720


>gi|319744437|gb|EFV96794.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae ATCC 13813]
          Length = 722

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 172/748 (22%), Positives = 307/748 (41%), Gaps = 80/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  E     +        L +      +  +      ++
Sbjct: 29  KEAVEQYMIEHVEPNTMTFTSL-IEKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYTKK 87

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + + 
Sbjct: 88  FAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLAN 146

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N+G +   +  SC+L  + D++  I  A+  +  L+K  GG+    T +R
Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLR 206

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++ 
Sbjct: 207 EFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRE 266

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    IPD+  +    N    LFSP    D+  +YGK         E +
Sbjct: 267 NADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISITEEYE 323

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  + +  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 324 TLLANADIRKTFISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLN------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGSIN+         D++KL +    A+  +   
Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAMDQ-AADFEKLIANSIRALDRISRT 442

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            D++  +    KK N  + A+GLG M     L   HI Y S EA++  D     ++++A 
Sbjct: 443 SDLD--SAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAF 500

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWD 747
            AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W 
Sbjct: 501 KASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWR 560

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++  
Sbjct: 561 KLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-- 618

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866
                                       +I  D    +   A+E+ P  +I  A+  QK 
Sbjct: 619 ----------------------------KIDADNYVYYKKGAYEVGPEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQA SL L++ +  + + L+  Y QA+     + YY+R R                   
Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------------------Q 692

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +    S    +    + +   +C+ C
Sbjct: 693 DILEGSESYDDDMLDDFTSSDLEDCQSC 720


>gi|322391985|ref|ZP_08065449.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           peroris ATCC 700780]
 gi|321145211|gb|EFX40608.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           peroris ATCC 700780]
          Length = 719

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 160/712 (22%), Positives = 280/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L   +K + 
Sbjct: 32  KEALDAFFKENVVPNSMVFDSITDK-INYLIEHNYIETAFIKKYRPEFLEELYQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EGGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +    +          + E+   + +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYANGTYFDKYVTGEFVPKSDRIKELFKNVFIPSAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+ +VK  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LRDKVKVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPQGLYEWKSENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|25010528|ref|NP_734923.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae NEM316]
 gi|23094881|emb|CAD46099.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 722

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 170/724 (23%), Positives = 301/724 (41%), Gaps = 79/724 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           E     +        L +      +  +      ++     ++G    Y+ Y L    +R
Sbjct: 52  EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFAFLNFMGALKFYNAYALKTEDNR 111

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
             + + +  RV M         EK A +  + + +  F  +TPT  N+G +   +  SC+
Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+  +  L+K  GG+    T +R  GA I G   ++ G++P +K+  
Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
              N    LFSP    D+  +YGK         E +       + +  ISA  L++ +  
Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599
           + FE+G+P+I F+D  N ++P +  G +  SNLC+EI               +       
Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTASQFSEDLTFTKVGHDVC 407

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSIN+         D++KL +    A+  +    D++  +    KK N  + A+GLG
Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKGNAANHAVGLG 464

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            M     L   HI Y S EA++  D     ++++A  AS  LA+E+G +  F  S +  G
Sbjct: 465 AMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +         E +         E  +   S+  W +L + +K IG+ N++ +A+APT +
Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ +   + S+ P    + V+   +     V ++                          
Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618

Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
               +I  D    +   A+E+ P  +I  A+  QK IDQA SL L++ +  + + L+  Y
Sbjct: 619 ----KIDADNYVYYKKGAYEVGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAY 674

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            QA+     + YY+R R                     +    S    +    + +   +
Sbjct: 675 IQAFKQKCASIYYVRVR------------------QDILEGSESYDDDMLDDFTSSDLED 716

Query: 950 CEVC 953
           C+ C
Sbjct: 717 CQAC 720


>gi|308235082|ref|ZP_07665819.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella
           vaginalis ATCC 14018]
          Length = 698

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 159/684 (23%), Positives = 269/684 (39%), Gaps = 75/684 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E     I        +        L       +        +LG    Y  Y L     
Sbjct: 39  HERLNYLISNYYYNGNVFGKYSSEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDG 98

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           +  +        A+ L L +   EK A+ + + + +  F  +TPT  N G     +  SC
Sbjct: 99  KQYLENFAQRAAAVALELAD-GDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSC 157

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    T +R LGA I     +S GV+P +K+ 
Sbjct: 158 FLVRLEDNMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLL 217

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   Y+   H D+  FLD ++   D++ R   ++    IPD+  +
Sbjct: 218 EDSFSYANQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFE 277

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550
              +     LFSP    D+   YGK F                ++ +K I A   +  + 
Sbjct: 278 LAKRKEKMALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTLA 334

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598
            + FE+G+P+I F+D  N  +P    G +  SNLC+EI               S      
Sbjct: 335 EIQFESGYPYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRDI 392

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+             L +++  AVR L +V +  +  ++   ++ N    AIG
Sbjct: 393 SCNLGSLNIAKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIG 446

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716
           LG M     L   H+ Y S EA++  D     +++HA  AS  LA ERG  ++SFK S +
Sbjct: 447 LGQMNLHGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSAY 506

Query: 717 DQGVFPIDSIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
            +     +                    ++     +   +   W++L+  +   G+ N  
Sbjct: 507 AKPAGKGNYFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILRDGIYNEY 566

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
             A+ PT +I+ I   + SI P    + ++     G      +++ N+            
Sbjct: 567 LQAVPPTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM---------- 616

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
                                +    A+EI    +I++ +   + +DQ  SL L+  +  
Sbjct: 617 ---------------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTT 655

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904
           + + L+     AW  G+KT YY+R
Sbjct: 656 TTRDLNKAQIYAWRKGIKTLYYIR 679


>gi|77411320|ref|ZP_00787669.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|77162656|gb|EAO73618.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
          Length = 722

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 172/748 (22%), Positives = 307/748 (41%), Gaps = 80/748 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +     +  +        L  E     +        L +      +  +      ++
Sbjct: 29  KEAVEQYMIEHVEPNTMTFTSL-IEKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKK 87

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++G    Y+ Y L    +R  + + +  RV M         EK A +  + + + 
Sbjct: 88  FAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLAN 146

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            F  +TPT  N+G +   +  SC+L  + D++  I  A+  +  L+K  GG+    T +R
Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLR 206

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  FLD ++ 
Sbjct: 207 EFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRE 266

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    IPD+  +    N    LFSP    D+  +YGK         E +
Sbjct: 267 NADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISITEEYE 323

Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                  + +  ISA  L++ +  + FE+G+P+I F+D  N ++P +  G +  SNLC+E
Sbjct: 324 TLLANADIRKTFISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383

Query: 588 ITLN------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGSIN+         D++KL +    A+  +   
Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAMDQ-AADFEKLIANSIRALDRISRT 442

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            D++  +    KK N  + A+GLG M     L   HI Y S EA++  D     ++++A 
Sbjct: 443 SDLD--SAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAF 500

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWD 747
            AS  LA+E+G +  F  S +  G +         E +         E  +   S+  W 
Sbjct: 501 KASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWR 560

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L + +K IG+ N++ +A+APT +I+ +   + S+ P    + V+   +     V ++  
Sbjct: 561 KLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-- 618

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866
                                       +I  D    +   A+E+ P  +I  A+  QK 
Sbjct: 619 ----------------------------KIDADNYVYYKKGAYEVGPEAIINIAAAAQKH 650

Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           IDQA SL L++ +  + + L+  Y QA+     + YY+R R                   
Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------------------Q 692

Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             +    S    +    + +   +C+ C
Sbjct: 693 DILEGSESYDDDMLDDFTSSDLEDCQSC 720


>gi|315613101|ref|ZP_07888011.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           sanguinis ATCC 49296]
 gi|315314663|gb|EFU62705.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus
           sanguinis ATCC 49296]
          Length = 719

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 159/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L   +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFLKKYRPEFLEELHQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAT--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|293365330|ref|ZP_06612047.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           oralis ATCC 35037]
 gi|291316780|gb|EFE57216.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           oralis ATCC 35037]
          Length = 719

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 158/712 (22%), Positives = 281/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L   +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFLKKYRPEFLEELHQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y S E+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAT--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|241116846|ref|XP_002401636.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes
           scapularis]
 gi|215493180|gb|EEC02821.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes
           scapularis]
          Length = 382

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 124/430 (28%), Positives = 190/430 (44%), Gaps = 57/430 (13%)

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590
            KV  K+ A  LW K+LT   ETG P++ F D  N   P+ H      V  SNLC+EITL
Sbjct: 1   KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITL 60

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK--- 647
            +  +           L +       ++      I + +  LDNV++   +         
Sbjct: 61  PTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 120

Query: 648 -KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
             S    R++GLG+MGF S L +  +P  S        +  E+IS  A  AS+E+ +E+G
Sbjct: 121 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADKASIEIGKEKG 180

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                            D++   +  R                           SN  AI
Sbjct: 181 VCP--------------DALDAGSNER--------------------------FSNKTAI 200

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APTA+I+ I G  S  I+P   N +V+  ++G F V N  L   L+++   ++ + S + 
Sbjct: 201 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 260

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
            H+GS+ ++  + ++ K++  TA+EID  WLIE AS R  +I QAQSLN++L    S K 
Sbjct: 261 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNISKKY 320

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           L+ I+ +AW  G+K+ YY RS S    +K +          VP  D           +  
Sbjct: 321 LNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHD--------VPKADFKDLEKQNDKLAEA 372

Query: 945 TSDTECEVCQ 954
            +  EC  CQ
Sbjct: 373 GNYEECLACQ 382


>gi|257882207|ref|ZP_05661860.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257817865|gb|EEV45193.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
          Length = 719

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 283/709 (39%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++  K        +  +      +E ++A  +      F +  L   L  + 
Sbjct: 32  KEALVAFFEENVKPNTMTFLSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RVA          E+ A+   + + 
Sbjct: 91  FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+   R  +L SCFLT V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVNITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  I+  + I A  L  ++  +  E+G+P++   D  N        G +  SNLC+
Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI            +E  V     S NL +    N         ++RT  R L  + D  
Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   +  N  +  IGLG MG  + L    + Y S ++++  +     +++  +  S
Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503

Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751
             +A+ER   + +F+ S +  G +       +      +V+     +   +   W+ LK+
Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I   S SI P  + +  +     G       +L N  
Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                        +    + +A+++D   +I+  +  Q+ +DQ 
Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYAMAQQHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L++               + + + L+     A+  G+K+ YY+R+
Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNIFRHYAFHKGIKSIYYVRT 701


>gi|313665033|ref|YP_004046904.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           leachii PG50]
 gi|312949963|gb|ADR24559.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           leachii PG50]
          Length = 720

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 167/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%)

Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           +  +  ++R+ I    +         A   L+         +  + +K +  + +  Y  
Sbjct: 15  DEYIKLNARSKIFSKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 65

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                +E       +        +  L N           ++G    ++ Y L    + +
Sbjct: 66  ----LLENQYYDSEILNKYSFDQISQLNNYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 121

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
            +      RV M           +A      +    F  +TPT  N+  +H  +  SC+L
Sbjct: 122 YLETYT-DRVLMNALFLGNGNFNKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 180

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D++  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D
Sbjct: 181 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 240

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    +Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +  
Sbjct: 241 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 300

Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             N    LFSP +V   +          E  YE  E       IK    ISA   +  + 
Sbjct: 301 RDNKDMALFSPYDVQKTYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I F+D  N R+     G +  SNLC+EI   S++ E              
Sbjct: 356 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDI 415

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+     +      + + +I  A+  LD V  + + +     KK N  + A+G
Sbjct: 416 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLNASPSIKKGNAENHAVG 471

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L    I Y SPEAV+  +     ++++A  AS +LA+E   ++SF  S + 
Sbjct: 472 LGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAKEFEKFASFDQSRFA 531

Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G           D        + E+  +  +   S+  W +L + +K  G+ NS+ MA+
Sbjct: 532 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAV 591

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + V+         V ++ +N                 Y
Sbjct: 592 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 640

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
             G+                  +E+ P  +I  A+  Q+ +DQA SL L++ +  + + L
Sbjct: 641 AMGT------------------YELGPDPIINIAAAAQQHVDQAISLTLFMTDKATTRDL 682

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +  Y  A+  G  + YY+R
Sbjct: 683 NRAYVNAFKQGCSSIYYVR 701


>gi|329121527|ref|ZP_08250151.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister
           micraerophilus DSM 19965]
 gi|327469442|gb|EGF14912.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister
           micraerophilus DSM 19965]
          Length = 730

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 173/750 (23%), Positives = 307/750 (40%), Gaps = 78/750 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    K   + +  +   L  E     ++       +        +  +   +  E 
Sbjct: 31  KEAVQEYIKTQIEPSMMKFSTL-EEKLKYLVDNNYYDEEILNRYSKTFIREI-YAIGKEY 88

Query: 290 DFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F   +G    Y  Y L  +  +  + + F  R  M         E  A +    + S
Sbjct: 89  DFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKKLVGDILS 147

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G +   +  SC+L  + D++  I   +  +  L+K  GG+    T +
Sbjct: 148 NRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLTNL 207

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R   A I G   +S GV+P +K+  DT    NQ G+R+GA   YL   H ++ +FLD ++
Sbjct: 208 REGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDTKR 267

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +     LFSP    D++ +YGK         E 
Sbjct: 268 ENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDVYKVYGKPMTDISITKEY 324

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC- 585
           +      KV +  I+A   ++ +  + FE+G+P+I ++D  N R+P +  G +  SNLC 
Sbjct: 325 ENLLRNDKVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRIVMSNLCS 384

Query: 586 -----------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                      TE        +   CNLGSIN+         D       I  AV  LD 
Sbjct: 385 EIAQVSTASTYTEDMSYYHVGQDICCNLGSINIAEAMK----DGKNFGEMIGRAVEALDR 440

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V    + +     K+ N  + AIGLG M     L   HI Y +PEAV+  D      +++
Sbjct: 441 VSRASDLNCAPSIKRGNEENHAIGLGAMNLHGFLATHHIYYDTPEAVDFTDMFFYATAYY 500

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRTSRLP 745
           A  AS  +A ++GA++ F  S +  G +       L         E+ ++      ++  
Sbjct: 501 AFKASHYMAMKKGAFTGFADSEYADGSYFKKYTEELNVPKTEKVKELFEKYNFYIPTQED 560

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L + +K  G+ N++ +A+APT +I+ +   + S+ P    + V+         V ++
Sbjct: 561 WKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRVYVPAY 620

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQ 864
                                          I D+  K +   A+E+ P  +I+ A+  Q
Sbjct: 621 ------------------------------EIDDENYKYYEKGAYEVGPDAIIDVAAAAQ 650

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           K +DQA ++ L++    + + L+  Y +A+     + YY+R      + +  L+G +   
Sbjct: 651 KHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVR------IRQDVLEGSE--- 701

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                 + +   +      +C    EC+ C
Sbjct: 702 ---KFEEDSIIKNENKEVRNCDGSEECQTC 728


>gi|290956950|ref|YP_003488132.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           scabiei 87.22]
 gi|260646476|emb|CBG69573.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           scabiei 87.22]
          Length = 965

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 123/626 (19%), Positives = 225/626 (35%), Gaps = 32/626 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQVFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DVE+F+  +    +  R   D      +                 + +    ++D 
Sbjct: 243 VDHPDVEDFIATKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           +    E   E   R    GE  V  K+ A AL+RK+    +    P I +    N     
Sbjct: 297 FMTAVENGTEFGLRARMTGE--VIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTC 354

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G + +SN C+E        +   CNL S+NL+            F+ ++ A  +   
Sbjct: 355 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDDGLGRQSFEVERFAKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL--LAEVRDELA--MNRTSRL 744
            ++  A   S ELA   G Y  +  +                 A   D+L   +   +  
Sbjct: 471 LMTGTAYKRSAELAAVVGPYDGYARNADAHNRVMKQHSDANGTAVRMDDLDSPVWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RNS    +APT TI       +  ++P    + + K    G   +V
Sbjct: 531 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 590

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +      G++ +   +  +  ++   A     I PM  +
Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIADHGNVIDAPGLKQEHYEVFDCAMGERAISPMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + +    + ++++ IY +AW +G+K     R         S  
Sbjct: 651 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQPLSAK 710

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
                K       +         +  
Sbjct: 711 TKESEKAEITEKAEETIRATVEKVVE 736


>gi|158313087|ref|YP_001505595.1| vitamin B12-dependent ribonucleotide reductase [Frankia sp.
           EAN1pec]
 gi|158108492|gb|ABW10689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EAN1pec]
          Length = 1011

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 122/609 (20%), Positives = 228/609 (37%), Gaps = 28/609 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    E++ E    E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 110 GYFASESDAEIFEHELTWMLLHQVFSFNSPVWFNVGTAAPQQVSACFILAVDDTMESILN 169

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 170 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 228

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H DV EF++ +    D  R   D      +    +  V           
Sbjct: 229 RAAKMVVLDVDHPDVVEFVETKAREEDKIRALRDAGFDMDLGGRDIASVQYQNANNSVRV 288

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           ++      + G  F++          R + +V   + A  L+R +    +E   P I + 
Sbjct: 289 NDEFMRAVVDGTSFDLR--------ARLDNRVIESVDARGLFRTISQAAWECADPGIQYD 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
              N        G + +SN C+E        + + CNL S+NL+     ++ FD +   +
Sbjct: 341 GTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASLNLMKFLRPDRTFDTETFVA 396

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           ++   +  +D  I        +  K    +R +G+G     + L      Y S     +A
Sbjct: 397 SVELIITAMDISICFADFPTPEITKVTRAYRQLGIGYANLGALLMASARAYDSDGGRALA 456

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739
                 ++  A   S ELA   GAY  F  +                 VR    +E  + 
Sbjct: 457 AAITSLMTATAYRRSAELAGTVGAYDGFARNADAHRRVVRKHSAANDAVRTVHAEEARLI 516

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG- 797
             +   W+      +  G RN+    +APT TI       +  I+P    + +K  + G 
Sbjct: 517 TAASKEWERALSVGEKHGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGA 576

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA---FEID 852
              +VN  +   L+     +E + + ++Y    G + +   +  +  ++   A     I 
Sbjct: 577 SMKIVNQTVPAALRALGYAEETIEAIVEYIAEHGHVVDAPGLRTEHYEVFDCAIGDRAIS 636

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q ++  A S  + +    +  +++ IY + W +GLK     R       
Sbjct: 637 PMGHVRMMAAVQPFLSGAISKTVNMPATATVAEVEEIYLEGWRLGLKALAIYRDNCKVGQ 696

Query: 912 EKSTLKGVD 920
             + +KG  
Sbjct: 697 PLTDVKGAK 705


>gi|322376537|ref|ZP_08051030.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. M334]
 gi|321282344|gb|EFX59351.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. M334]
          Length = 719

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 156/712 (21%), Positives = 288/712 (40%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +       + ++   + +   +F L  ++  +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDKIDYLIEHDYIETTFIKKYRPEF-LEEMSQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y SPE+VE        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S + +G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+ +V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  +    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|212716022|ref|ZP_03324150.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661389|gb|EEB21964.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM
           16992]
          Length = 698

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 151/682 (22%), Positives = 257/682 (37%), Gaps = 77/682 (11%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSR 313
             R I +G     +        L     ++         +LG    +  Y L        
Sbjct: 42  LSRLIADGYYDESVFAQYDTEFLDRFYRNVDECGFEFDTFLGAFKFHRSYALKTFDGKQY 101

Query: 314 IEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
           +E  PQ    R A             A  ++  L S  F  +TPT  N G     +  SC
Sbjct: 102 LENFPQ----RAAAVALALAAGDHAAAESYFEELVSGRFQPATPTFLNLGKAQRGEAVSC 157

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D++  I   +     L+K  GG+    + +R  GA I     +S G++P +K+ 
Sbjct: 158 FLIRIEDNMESISRGINAALQLSKRGGGVALLLSNLREAGAPIKRIKHQSSGIVPVMKLL 217

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   +     IPD+  +
Sbjct: 218 EDSFSYANQLGARQGAGAVYLSAHHPDIMHFLDTKRENADEKIRIKSLALGVVIPDITFE 277

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550
              ++    LFSP +V  +    G+ F     +   +    + ++ +  I A   +  + 
Sbjct: 278 LAKRHERMALFSPYDVERVM---GRPFADVSISENYRNMVDDERIGKTYIDAREFFMTLA 334

Query: 551 TMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVC 600
            + FE+G+P++ F+D  N  +P             +  V   +   E            C
Sbjct: 335 ELQFESGYPYMVFEDTVNRANPIDGRIAMSNLCSEILQVQEPSTYHEDLSYDHVGRDVSC 394

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659
           NLGS+N+             L  T+  A+R L +V +  +   +   +++N    AIGLG
Sbjct: 395 NLGSLNIAKAMDG------DLGRTVERAIRALTSVSERTDIACVPSIRRANDEGHAIGLG 448

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718
            M     L    I Y SPEA++  D     +++HA  AS ELA ERG  +  F+ S + +
Sbjct: 449 QMNLHGFLARESIMYGSPEALDFTDMYFMTVAYHAYRASHELAVERGTRFVGFERSAYAK 508

Query: 719 GVFPIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCM 764
                +           LA                      W  L+  +   G+ N    
Sbjct: 509 PTGAGNYFDKYTNGERPLAPKTGKVASLFARRGIHIPDEDDWRRLRDDIIRDGIFNQYLQ 568

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823
           A+ PT +I+ I   + SI P    + ++     G       ++ N+              
Sbjct: 569 AVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRIYYPAPYMTND-------------- 614

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
                              +  A A+EI    ++++ +   + +DQ  SL L+  +  + 
Sbjct: 615 -----------------NLQYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATT 657

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           + L+     AW  G+KT YY+R
Sbjct: 658 RDLNKAQIYAWRKGIKTLYYIR 679


>gi|329939982|ref|ZP_08289264.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseoaurantiacus M045]
 gi|329300808|gb|EGG44704.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           griseoaurantiacus M045]
          Length = 969

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 122/632 (19%), Positives = 230/632 (36%), Gaps = 32/632 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 125 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 184

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 243

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DVE F+  +    +  R   D      +    +  V           ++       
Sbjct: 244 VDHPDVENFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVE 303

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            G +F            R   +V  +I A +L+RKM    +    P I + D  N     
Sbjct: 304 TGGKF--------GLTSRMTGEVIEEIDAKSLFRKMAEAAWACADPGIQYDDTINHWHTC 355

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G ++ SN C+E        +   CNL S+NL+         +  F+ ++    +   
Sbjct: 356 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGQGHQSFETERFQKLVELV 411

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     +A     
Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 471

Query: 689 FISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744
            ++  A   S ELA   G Y  +  +     + +        +A   D+L   +   +  
Sbjct: 472 LMTGTAYRRSAELASVVGPYDGYARNAQPHQRVMKQHADANAVAPRMDDLDTPVWAAATE 531

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++++  +  G RNS    +APT TI       +  ++P    + + K    G   +V
Sbjct: 532 AWQDVQRLGEKHGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 591

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +     +G++ +   +  +  ++   A     I PM  +
Sbjct: 592 NGTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAPGLKAEHYEVFDCAMGERAISPMGHV 651

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + +    + ++++ IY +AW +G+K     R         S  
Sbjct: 652 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQPLSAK 711

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                      +T+    T    +        
Sbjct: 712 TKDTKAAEKDAITEKAEETIRTAVEKVVEYRP 743


>gi|83319418|ref|YP_424095.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283304|gb|ABC01236.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 720

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 169/736 (22%), Positives = 294/736 (39%), Gaps = 79/736 (10%)

Query: 199 ETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +  +  ++R+ I  K+ +           +L  +      K   +    +   L  E   
Sbjct: 15  DEYIKLNARSKIFSKDQD---------NFQLDIKAAELYLKNYIEPRMKKFSSL-KERLD 64

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             +E       +        +  L +           ++G    ++ Y L    + + + 
Sbjct: 65  YLLENQYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYLE 124

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376
                RV M           +A      +    F  +TPT  N+  +H  +  SC+L   
Sbjct: 125 TYT-DRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRT 183

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D++  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D+  
Sbjct: 184 EDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFT 243

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +    N
Sbjct: 244 YADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDN 303

Query: 497 AGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
               LFSP +V  ++          E  YE  E       IK    ISA   +  +  + 
Sbjct: 304 KDMALFSPYDVQKVYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVAELH 358

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I F+D  N R+     G +  SNLC+EI   S++ E               CN
Sbjct: 359 FESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCN 418

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+     +      + + +I  A+  LD V  + +       KK N  + A+GLG 
Sbjct: 419 LGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSASPSIKKGNAENHAVGLGA 474

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG- 719
           M     L    I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S +  G 
Sbjct: 475 MNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGS 534

Query: 720 ------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
                     D        + E+  +  +   S+  W EL + +K  G+ NS+ MA+APT
Sbjct: 535 WFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIELVEEIKKTGLANSHLMAVAPT 594

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   + S+ P    + V+         V ++ +N                 Y  G
Sbjct: 595 GSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------YAMG 643

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
                             A+E+ P  +I   +  Q+ +DQA SL L++ +  + + L+  
Sbjct: 644 ------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRA 685

Query: 889 YRQAWLMGLKTTYYLR 904
           Y  A+  G  + YY+R
Sbjct: 686 YVNAFKQGCSSIYYVR 701


>gi|307822851|ref|ZP_07653082.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacter tundripaludum SV96]
 gi|307736455|gb|EFO07301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacter tundripaludum SV96]
          Length = 716

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 128/653 (19%), Positives = 248/653 (37%), Gaps = 57/653 (8%)

Query: 293 FEYLGLQILYDRYFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLS--S 348
           F+   + I   +Y L               + RVA  ++  E  K K+   + + L    
Sbjct: 17  FQDASMDIWDTKYRLKTKDGIAIDGTIDETYQRVAKAISAVEKGKTKQEQCYKDFLWALR 76

Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGND 403
              + +     N+G    +      +C ++ T+ D +  I G + E  +  K   G+G +
Sbjct: 77  QGAIPAGRITSNAGALEHKPATSTINCTVSGTIADSMDDILGKVHEAGLTLKAGCGIGYE 136

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R   A++ G    + G + F+ + +     V+  G R+GA  A  +  H DV EF+
Sbjct: 137 FSTLRPKNAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDVVEFI 196

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             ++    +  R    N +  I   F++ V  +  W+L  P    ++        +    
Sbjct: 197 RAKR----EDGRLRQFNLSLLITSEFVEAVKNDKPWSLSFPVTEKEVKLDNLDLTDDKLI 252

Query: 524 NYERQADRGE----------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
            +                   K+ + + A  LW  +++  ++   P     D  N  +  
Sbjct: 253 IWRDLPYIDGYILNDDGMVACKISKTMPARRLWDIIMSSTYDYAEPGFILIDKVNEMNNN 312

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTA 628
                + ++N C E  L         C LGSINL             FD+D     I+  
Sbjct: 313 WFCEKIRATNPCGEQPLPPY----GSCLLGSINLTRFVKKPFTNDAHFDWDNYRKAIKIF 368

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
            R+LDNV++IN   + + ++   T R  G+G +G  S + ++ + Y   +++E  +E  +
Sbjct: 369 TRMLDNVVEINGLPLAQQREEILTKRRHGMGYLGLGSTVTMMGMKYGDAQSLEFTEEVTK 428

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPI-------DSIGLLAEVRDELAMNRT 741
            ++     A + LA+E+G     +      G           D   +   V  +L   + 
Sbjct: 429 VLAVEGWKAGLALAKEKGPAPIMEQMFSVTGEMLHKRPEMIADGYKVGDRVPGKLLHTKY 488

Query: 742 SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
           SR          EL   +   G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 489 SRYMQQVAQEEPELVAELIETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 548

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEID 852
            +               ++ D++   +++  +  +         P+  L      A ++ 
Sbjct: 549 VI--------RAGKKSKEKIDVFSFELLAYREMVNADAMPYSDDPEQKLPDYFIAADDVT 600

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           P   ++  +  QKWID + S    +  +   +    IY  A+  GLK     R
Sbjct: 601 PKQHVDIQAAAQKWIDSSISKTANVPTDYPYEDFKSIYEYAYDKGLKGCTTFR 653


>gi|322374375|ref|ZP_08048889.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C300]
 gi|321279875|gb|EFX56914.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           sp. C300]
          Length = 719

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 157/712 (22%), Positives = 281/712 (39%), Gaps = 78/712 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L   +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFIKKYRPEFLEELHQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A +  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637
                  E ++ N            S NL +    N         +IR  VR L  V D 
Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +      N      GLG MG  S L    I Y S E++E        +++  +  
Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSHESIEFTSIYFMLMNYWTLVE 502

Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+ERG  + +F+ S +  G +    +          + E+  ++ +   +   W E
Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--DWAE 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G          
Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|301321220|gb|ADK69863.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 720

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 166/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%)

Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           +  +  ++R+ I    +         A   L+         +  + +K +  + +  Y  
Sbjct: 15  DEYIKLNARSKIFLKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 65

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                +E       +        +  L +           ++G    ++ Y L    + +
Sbjct: 66  ----LLENQYYDSEILNKYSFDQISQLNHYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 121

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
            +      RV M           +A +    +    F  +TPT  N+  +H  +  SC+L
Sbjct: 122 YLETYT-DRVLMNALFLGNGNFNKAKDLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 180

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D++  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D
Sbjct: 181 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 240

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    +Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +  
Sbjct: 241 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 300

Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             N    LFSP +V   +          E  YE  E       IK    ISA   +  + 
Sbjct: 301 RDNKDMALFSPYDVQKTYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I F+D  N R+     G +  SNLC+EI   S++ E              
Sbjct: 356 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYNSDLSFIKTGEDI 415

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+     +      + + +I  A+  LD V  + +       +K N  + A+G
Sbjct: 416 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSASPSIQKGNALNHAVG 471

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L +  I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S + 
Sbjct: 472 LGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFA 531

Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G           D        + E+  +  +   S+  W +L + +K  G+ NS+ MA+
Sbjct: 532 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAV 591

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + V+         V ++ +N                 Y
Sbjct: 592 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 640

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
             G                  A+E+ P  +I   +  Q+ +DQA SL L++ +  + + L
Sbjct: 641 AMG------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 682

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +  Y  A+  G  + YY+R
Sbjct: 683 NKAYVNAFKQGCSSIYYVR 701


>gi|312865007|ref|ZP_07725235.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
 gi|311099118|gb|EFQ57334.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
          Length = 725

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 159/736 (21%), Positives = 285/736 (38%), Gaps = 96/736 (13%)

Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-- 276
           V  +  L    +E L    +   K      +  +       IE     + +  +      
Sbjct: 19  VAGKIPLHY-DQEALEDYLQHEIKPKTKSFES-FSNQIDYLIEHDYIDQDVLSAYSKEGN 76

Query: 277 --DLVYLANDLKYERDFAF---EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLA 329
             D  ++    +    + F    ++     Y++Y +  +     +E  +    RV     
Sbjct: 77  GIDKAFIQELFEEAYQYGFKFKSFMAAYKFYNQYAMKTDDLQQYLENFED---RVVFNAL 133

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQ 388
                  + A    + L S  +  +TPT  N+G +   ++ SCFL  + D +  I   + 
Sbjct: 134 YLAAGNRELARHLVDELISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRGIN 193

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
               L++  GG+G + + +R  G+ I        GV+P +K+  D+    NQ G+R GA 
Sbjct: 194 SALQLSRIGGGVGVNLSNLRASGSPIKRIAHAFSGVLPVMKLLEDSFSYSNQLGQRNGAG 253

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
             YL  +H D+  FL  +K   D++ R   ++    +PD + + +  N    LF+P    
Sbjct: 254 VVYLNVFHQDILAFLSTKKENTDEKIRVKTLSLGLVVPDKYYELLKTNQPMYLFNP---Y 310

Query: 509 DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            +   YG+ F       E  +           I+A  L +++  +  E+G+P+I   D  
Sbjct: 311 HVERAYGRPFSYVDITAEYDKLVANPAIEKMVINARELEQEISRLQQESGYPYILNIDSA 370

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQ 615
           N  +P    G +  SNLC+EI                       CNLGS+N++    +  
Sbjct: 371 NRSNPV--KGRIIMSNLCSEILQPQEPSTLNRDLTYQEVGTDISCNLGSMNMVNLLRSP- 427

Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                   +I  AVR L  V D      +    K N  +  IGLG MG  +AL L  + Y
Sbjct: 428 ----DFGKSIEYAVRALTTVTDSESIEEVPTVAKGNALYHTIGLGAMGLHTALALNGLNY 483

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR 733
            S EA+E  D     ++++++ AS ++A E+   +  F+ S +  G +  D         
Sbjct: 484 DSKEALEFVDAFFLAMNYYSLKASHQIALEKKQVFHDFEASKYADGSY-FDQYLQDDFHF 542

Query: 734 DELAMNRT-------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           D   + ++       S   W  LK+ V   G+ + N +A+AP  +I+ I   S S+ P  
Sbjct: 543 DFPQVAKSFETIHLPSLEDWQALKEAVMADGLYHRNRLAVAPNGSISYINETSASLHPIT 602

Query: 787 QNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           Q +  +     G       +L N+                                   +
Sbjct: 603 QLIENRQEKKVGSIFYPAPYLSNDTISH-------------------------------Y 631

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIY 889
            TA+++D   +I+  ++ QK +DQ  SL L++                   + + L+ + 
Sbjct: 632 KTAYDMDQRKIIDIYAQAQKHVDQGLSLTLFMRSKLPQGLYEWKKPDHPNLTTRDLNKLR 691

Query: 890 RQAWLMGLKTTYYLRS 905
             AW  G+K+ YY+R+
Sbjct: 692 NYAWTKGIKSLYYVRT 707


>gi|90416806|ref|ZP_01224736.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium
           HTCC2207]
 gi|90331559|gb|EAS46795.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium
           HTCC2207]
          Length = 720

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 131/622 (21%), Positives = 245/622 (39%), Gaps = 56/622 (9%)

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCS---TPTLFNSGTRHPQLSSCFLTT 375
           + RVA  L+    E+ +E+    F   L           +     +        +C ++ 
Sbjct: 54  YARVAKALSDVEDESLREEWQTRFVWALKHGAIPAGRIISNAGAQAYKPATSTINCTVSG 113

Query: 376 -VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            VPD + GI     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 114 IVPDSMVGILERNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKM 173

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+  ++    +  R    N +  I + F++ V 
Sbjct: 174 CFTVSSAGGRRGAQMATFDVSHPDVFDFVRAKR----EDGRLRQFNLSLLITEEFIEAVR 229

Query: 495 QNAGWTLFSPDEVSDLH--------DLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
            +  W L  P    ++         ++  K F      Y         +++  I A  LW
Sbjct: 230 NDGSWDLTFPISAKEIDAGLDLKGDNIVWKPFPTTENYYCNDDGLVACRIYETIRAQKLW 289

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
             +++  ++   P     D  N  +       + ++N C E  L         C LGS+N
Sbjct: 290 NAIMSSTYDYAEPGFILIDQVNKNNNNWFCEDIRATNPCGEQPLPPY----GSCLLGSVN 345

Query: 607 LLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
           L     N       FD+++ A  +    R+LDNV++IN   ++  +K     R  G+G +
Sbjct: 346 LTKFVRNPFTKDAYFDWEEYAEVVAVFTRMLDNVVEINGLPLDNQRKEIEYKRRHGMGFL 405

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------- 714
           G  S + +L + Y    ++E  D     ++   + A +ELA+E+G     +         
Sbjct: 406 GLGSTITMLQMKYGDEGSLEFTDRIARDMAVAGLKAGLELAREKGPAPIMEDDFEVTAAL 465

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAP 768
           L+ +     D I     ++ ++ + + S+          EL + +   G R S+  +IAP
Sbjct: 466 LFKRPELAKDGIKAGDSLKGKVLLGKYSKYMQTIATVAPELIESIIEEGCRFSHHSSIAP 525

Query: 769 TATIANIC--GVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISD 823
           T TI+      VS  I+PS+ + Y ++ +         V+ F    L  R L ++  +  
Sbjct: 526 TGTISLSLANNVSNGIEPSFAHHYARNVIREGKKSKEKVDVFSYELLAYRTLINDKAMPY 585

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
               D          + L     ++  I P   ++  +  QKW+D + S  + +  +   
Sbjct: 586 ATNED----------EALPDYFMSSENIMPRAHVDIQAAAQKWVDSSISKTINVPTDCDY 635

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           +    IY  A   GLK     R
Sbjct: 636 EDFKDIYLYAAEKGLKGCTTFR 657


>gi|19746347|ref|NP_607483.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS8232]
 gi|19748542|gb|AAL97982.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes MGAS8232]
          Length = 719

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 161/717 (22%), Positives = 285/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  +H+   +F +  LA+ +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIHKYHPEF-ITELASVIKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV          +E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F        
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382

Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQTPSLVNDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +         L+ ++  +  + + S 
Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQAS- 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W  L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 557 -DWKALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             +  D    + +A+++D   +I+  + 
Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|226942250|ref|YP_002797323.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent
           [Azotobacter vinelandii DJ]
 gi|226717177|gb|ACO76348.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent
           [Azotobacter vinelandii DJ]
          Length = 713

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 137/619 (22%), Positives = 248/619 (40%), Gaps = 54/619 (8%)

Query: 323 RVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLT-T 375
           R+A  LA   +E  +E    +F   L +     +   + N+            +C ++ T
Sbjct: 49  RIARALAEIEREDVREHWYRQFLWALRNGAI-PAGRIVANAGAQVWRPATSTINCTVSGT 107

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D +  I   +QE  +  K   G+G +++ +R  GA + G   ++ G + F+ + +   
Sbjct: 108 LYDAMDDILAKVQEAGLTLKAGCGIGYEFSTLRPHGAFVSGAGARTSGPLSFMDIFDRMC 167

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+  G R+GA  A  +  H DV EF+  ++    +  R    N +  I D FM+ V  
Sbjct: 168 FTVSSAGGRRGAQMATFDVAHPDVREFIRAKR----EDGRLRQFNLSLLITDEFMQAVEN 223

Query: 496 NAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           +A W L  P            D + +  +++ +      R   +   +++ K+ A  LW 
Sbjct: 224 DAEWPLVFPVHPKEAAELDLGDPNQVLWRDWPLHEGYPVRDDGKVACRIYGKVRARHLWD 283

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            ++   ++   P     D  N  +       + ++N C E  L         C LGS+NL
Sbjct: 284 MLMVSTYDFAEPGFILIDRVNQLNNNWWCEEIRATNPCGEQPLPPY----GSCLLGSVNL 339

Query: 608 LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            A           FD+++    +R   R+LDNV++IN   ++  ++     R  G+G +G
Sbjct: 340 TAFVEEPFTARARFDWERFRQVVRIFTRLLDNVVEINNLPLQAQRREILDKRRHGMGFLG 399

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGSL 715
             SAL LL + Y SPEA    +E    ++      ++ELA+E+G        +      L
Sbjct: 400 LGSALTLLRLRYGSPEACVFTEEVAREMALVGWEVALELAKEKGPAPLLAQEFEVTAKML 459

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPT 769
             +     D   +   V   +   R SR          EL   +   G R ++  +IAPT
Sbjct: 460 RQRPEMATDGYRVGDRVAGRVLHARYSRYMQRLAEFAPELIAALAEQGARFTHHTSIAPT 519

Query: 770 ATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            TI+       S  I+PS+ + Y ++ +               ++ +++   +++     
Sbjct: 520 GTISLSLANNASNGIEPSFAHQYSRNLI--------RPGRKAKEKVEVFSYELLAYRALV 571

Query: 828 DGSIGNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
           D         P   L     +A +I P   ++  +  QKW+D + S    +  +   +  
Sbjct: 572 DPQAQPGGDEPAHRLPDYFVSADDIGPTQHVDIQAAAQKWVDSSLSKTANVPTDYPFEAF 631

Query: 886 DFIYRQAWLMGLKTTYYLR 904
             IYR AW  GLK     R
Sbjct: 632 KDIYRYAWRQGLKGCTTFR 650


>gi|313890803|ref|ZP_07824428.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120904|gb|EFR44018.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 719

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 164/718 (22%), Positives = 280/718 (38%), Gaps = 90/718 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++       +   +  +     +E         +      L  LA  LK E 
Sbjct: 32  KEALKAFFEENVLPNTKQFPSITDK-IKFLMENDYIETAFIQKYRPEFLEELATILKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +   M  A+  A      E+ A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYYA---DGNEELAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524
           K   D++ R   ++    +PD F +    N    LFSP    D+   YG  F      E 
Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSP---YDIEREYGIAFNYIDITEK 324

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           Y+       I   + + A  L  ++  +  E+G+P+I   D  N  +P    G +  SNL
Sbjct: 325 YDELVANPNITKTK-LRARDLETEISKLQQESGYPYIINIDTANKTNPI--DGKIIMSNL 381

Query: 585 CTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           C+EI                       CNLGS N+L    +          +I+   R L
Sbjct: 382 CSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRAL 436

Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     ++
Sbjct: 437 TYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESIEFTDIYFMLMN 496

Query: 692 FHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742
           +  +  S  +A+E    +  F+ S +  G +    +         L+ E+     + + S
Sbjct: 497 YWTLVESNNIARERHTTFVGFEKSQYADGTYFDKYVTGQFIPKSDLVKELFKNHFIPQAS 556

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801
              W  L++ V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G    
Sbjct: 557 --DWQALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYY 614

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
                                              +  D    + +A+++D   +I+  +
Sbjct: 615 P-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYA 643

Query: 862 RRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
              + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 644 AATQHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|94990702|ref|YP_598802.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10270]
 gi|94544210|gb|ABF34258.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10270]
          Length = 719

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 159/717 (22%), Positives = 284/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  L + +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELDSIIKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV          +E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F        
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLC 382

Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +         L+ ++  +  + + S 
Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQAS- 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             +  D    + +A+++D   +I+  + 
Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|76788702|ref|YP_329138.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae A909]
 gi|77406063|ref|ZP_00783139.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
 gi|76563759|gb|ABA46343.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus
           agalactiae A909]
 gi|77175343|gb|EAO78136.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
          Length = 722

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 169/724 (23%), Positives = 301/724 (41%), Gaps = 79/724 (10%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           E     +        L +      +  +      ++     ++G    Y+ Y L    +R
Sbjct: 52  EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFTFLNFMGALKFYNAYALKTEDNR 111

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
             + + +  RV M         EK A +  + + +  F  +TPT  N+G +   +  SC+
Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+  +  L+K  GG+    T +R  GA I G   ++ G++P +K+  
Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
              N    LFSP    D+  +YGK         E +       + +  ISA  L++ +  
Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599
           + FE+G+P+I F+D  N ++P +  G +  SNLC+EI               +       
Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTASQFSEDLTFTKVGHDVC 407

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSIN+         D++KL +    A+  +    D++  +    KK N  + A+GLG
Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKGNAANHAVGLG 464

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            M     L   HI Y S EA++  D     ++++A  AS  LA+E+G +  F  S +  G
Sbjct: 465 AMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +         E +         E  +   S+  W +L + +K IG+ N++ +A+APT +
Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ +   + S+ P    + V+   +     V ++                          
Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618

Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
               +I  D    +   A+E+ P  +I  A+  QK +DQA SL L++ +  + + L+  Y
Sbjct: 619 ----KIDADNYVYYKKGAYEVGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAY 674

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            QA+     + YY+R R                     +    S    +    + +   +
Sbjct: 675 IQAFKQKCASIYYVRVR------------------QDILEGSESYDDDMLDDFTSSDLED 716

Query: 950 CEVC 953
           C+ C
Sbjct: 717 CQSC 720


>gi|313111562|ref|ZP_07797361.1| NrdJa [Pseudomonas aeruginosa 39016]
 gi|310883863|gb|EFQ42457.1| NrdJa [Pseudomonas aeruginosa 39016]
          Length = 734

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 140/621 (22%), Positives = 252/621 (40%), Gaps = 54/621 (8%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  +E     F   L +     +   + N+G    +      +C ++
Sbjct: 68  WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I   + E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA     +  H DV EF+  ++    +  R    N +  I D FM+ V
Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242

Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            Q+A W L  P  V         D + +  +E+ I  +  +R       KV+ ++ A  L
Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           W  ++   ++   P     D  N  +       + ++N C E  L         C LGS+
Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358

Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL             FD+D+    +R   R+LDNV++IN   +E+ ++     R  G+G 
Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713
           +G  S L LL + Y SPEA    +E    ++      ++ELA+E+G        Y     
Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767
            L  +     D       +R  +   + SR          EL + +   G R ++  +IA
Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538

Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI-SDL 824
           PT TI+       S  I+PS+ + Y ++ +               ++ +++   ++   +
Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRNLI--------REGRKTKEKVEVYSYELLAYRI 590

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
             +  ++ + +     L     TA  + P   ++  +  QKW D + S    +  +   +
Sbjct: 591 LVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWGDSSISKTANVPTDYPFE 650

Query: 884 KLDFIYRQAWLMGLKTTYYLR 904
               IYR AW  GLK     R
Sbjct: 651 DFKDIYRYAWHQGLKGCTTFR 671


>gi|194398211|ref|YP_002037787.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pneumoniae G54]
 gi|194357878|gb|ACF56326.1| ribonucleoside-diphosphate reductase, alpha subunitv [Streptococcus
           pneumoniae G54]
          Length = 719

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 158/715 (22%), Positives = 279/715 (39%), Gaps = 78/715 (10%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      +     IE         +      L  LA  +K
Sbjct: 28  LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            +      ++     Y++Y L  N     + +    RV           E  A++  N +
Sbjct: 88  DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
               +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  
Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382

Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           +EI       E ++ N            S NL +    N         +IR  VR L  V
Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439

Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D  +   +      N      GLG MG  S L    I Y SPE+VE        +++  
Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499

Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           +  S  +A+ERG  + +F+ S +  G +    +          + E+   + +   +   
Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W EL+ +V+  G+ + N +A+AP  +I  I  VS SI P  Q +  +     G       
Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSIXYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  +    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701


>gi|7330058|gb|AAF60047.1|AF210726_68 large ribonuclease reductase [Rhesus monkey rhadinovirus H26-95]
          Length = 788

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 166/753 (22%), Positives = 290/753 (38%), Gaps = 90/753 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLH 308
            +Y   + E          S  +  L  L  D K  + +       YL     YD Y L 
Sbjct: 75  RDYLAVFGERLSDEVRAFMSKHEAALDGLLQDFKQSKAYTNLVNCGYLSAVRFYDTYVLR 134

Query: 309 INGS--RIEMPQAFFMRVAMGL--------ALKETEKEKRAVEF-----------YNLLS 347
             GS    E     FMRVA+ +         L+ET +     E            ++ +S
Sbjct: 135 TQGSSPIFESVAQMFMRVAVFVACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYIS 194

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSGGLGNDWT 405
           S    C+TP L ++G R  QLSSCF+           +    +E + L     G+G D +
Sbjct: 195 SQIVCCATPVLRSAGLRGGQLSSCFILKPSMATEDKTLKALHEEMSPLLASKSGVGIDVS 254

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
                         + + +   LK+ N      N    R     AY+E WH  + +FL+ 
Sbjct: 255 SFA-----------EHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNA 303

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYE 523
           +     +  R H++     +P+LF +    N    W LF+P+   +L  LYG EFEI Y 
Sbjct: 304 KMPENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEIEYN 361

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582
                      K    +   ++   ++  + +TG P++  K+  N     +  G  ++ S
Sbjct: 362 RLVAA-----GKHSSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCS 416

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-------------YDKLASTIRTAV 629
           NLC EI       + +VCNL  I+L      ++ +             ++ +   +  AV
Sbjct: 417 NLCAEIVQQP-EGQASVCNLAHISLPKCLRPHRGESGVEPGKGDVTFGFELIDDAVEAAV 475

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +++  I       E  ++     R++G+G+ G       L   Y   ++ ++  E  + 
Sbjct: 476 IIVNACILGGTAPTESVRRG-QEERSMGIGVQGLADVFAELGFGYLDADSAKLDLEIFQA 534

Query: 690 ISFHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           + F A+  + E  L  E   +  ++ +   QGVF   +   +      L         W+
Sbjct: 535 MYFTAVQTTHEIVLLGEGTPFRGWERNQLAQGVFHWQTWDGVKPSHPPLE-------RWE 587

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L + +   G+ NS  +A+ PTA  + + G +++  P + N+  K     +    N    
Sbjct: 588 QLGRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFF 647

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             +K  DL        ++ + G + +      D  KI  TAF+  P+  +E A  R  ++
Sbjct: 648 KRVKPGDLRT------VRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFV 701

Query: 868 DQAQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923
           DQ+QSLN +L E   +    +  +    + +GLKT  YY R      ++K T       L
Sbjct: 702 DQSQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCR------IQKQTKLNALQCL 755

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTE--CEVCQ 954
           + V   + +S             +    C  CQ
Sbjct: 756 DQVVGDNISSEGAESNCVQKADGERTKVCLACQ 788


>gi|264678224|ref|YP_003278131.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2]
 gi|262208737|gb|ACY32835.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2]
          Length = 797

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 144/676 (21%), Positives = 250/676 (36%), Gaps = 96/676 (14%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356
            +L ++Y    +G + E  Q  F RVA  LA  E    +     +F   L          
Sbjct: 12  DVLAEKYLA--DGEQSE--QELFARVARALAAVEKPELQTHWEQQFLANLQRGAIGAGRI 67

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
                      L +CF+  V D   G         + AL + A   +  GG+G D++ +R
Sbjct: 68  MAAAGLDTKATLINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA + GTN  + G   F+ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 128 PRGALVRGTNSFASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  +   FM+ V  +A W L      S+     G             
Sbjct: 188 KG----RWNNFNVSVGVSSAFMQAVRDDAEWELVHVASPSEAQIQAG-----------AH 232

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                + V++   A ALW  ++   ++   P I F D  N  +   +   + ++N C E 
Sbjct: 233 RRDDGLWVYKSQPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQISATNPCGEQ 292

Query: 589 TLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            L         C+LG + L             FD +   + +   VR+LDNV+D     +
Sbjct: 293 PLPPY----GCCDLGPVILTRFVRDSFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPL 348

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            + ++     R IG+G  G   AL LL + YAS   ++ A      +   A +ASVELA+
Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAR 408

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E+G +  F    +                      +  ++    EL+  ++  G+RNS+ 
Sbjct: 409 EKGVFPLFNAKQY--------------------LKSGFAKRLPKELRATIRKHGLRNSHL 448

Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKS----NMSGDFTVVNSFLVNELKQRDLWD 817
           ++IAPT T++       S  I+P++   Y +     N    F  V        K      
Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRKKRTANGGEQFYTVQDHAYRLYKAM---- 504

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                          + +  P  L     +A E+     +      Q ++D + S  + +
Sbjct: 505 ---------------HGDEAP--LPDCFVSALELSASEHVAMMRCVQPFVDTSISKTVNI 547

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLR----------SRSATSVEKSTLKGVDGKLNAV 926
             +   +    +Y + W +GLK     R          + SA+++ ++        +N+V
Sbjct: 548 PADYPFEDFKHLYMECWEVGLKGCATYRPNDTLGAVLSTDSASTLSQAPTDKSQTAINSV 607

Query: 927 PVTDPNSSTHSLGIPS 942
             +   +         
Sbjct: 608 SSSGMTAVIERRPEGP 623


>gi|56807675|ref|ZP_00365559.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus
           pyogenes M49 591]
          Length = 587

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 161/635 (25%), Positives = 274/635 (43%), Gaps = 77/635 (12%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + +    F  +TPT  NSG +   +  SC+L  V D++  I  A+  +  L+K  GG+  
Sbjct: 3   DAILHRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 62

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
             T +R +GA I G   ++ G++P +K+  D+    NQ G+R+GA   YL   H +V  F
Sbjct: 63  CLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTF 122

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD ++   D++ R   +     IPD+  +   +N    LFSP    D+   YGK+     
Sbjct: 123 LDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDIS 179

Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
              E         + +  ISA  L++ +  + FE+G+P++ F D  N R+P    G +  
Sbjct: 180 ITEEYDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVM 239

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLC+EI   S+              E   CNLGSIN+         D       I T++
Sbjct: 240 SNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSI 295

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R LD V  + + +     +  N  + A+GLG M     L   HI Y + EAV+  D    
Sbjct: 296 RALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFH 355

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNR 740
            ++++A  AS +LA+E+GA++ F  S +  G +    +   A+ +         +     
Sbjct: 356 AMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTL 415

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L   +K  G+ N++ +A+APT +I+ +   + S+ P    + V+   S    
Sbjct: 416 PTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRI 475

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIES 859
            V ++                              +I       +   A+E+ P  +I+ 
Sbjct: 476 YVPAY------------------------------QINQANYTYYERGAYEVGPKAIIDV 505

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
            +  QK +DQA SL L++ +  + + L+  Y QA+     + YY+R R    V   + + 
Sbjct: 506 VAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQY 563

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            +  L   P     ++T             EC+ C
Sbjct: 564 DEDSLVTAPGASDETTT-------------ECQSC 585


>gi|111225058|ref|YP_715852.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni
           ACN14a]
 gi|111152590|emb|CAJ64331.1| Ribonucleoside-diphosphate reductase M1 chain (Vitamin
           B12-dependent ribonucleotide reductase) [Frankia alni
           ACN14a]
          Length = 1012

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 117/609 (19%), Positives = 220/609 (36%), Gaps = 28/609 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    + + E    E   +L    F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 111 GYFATDADAEIFEHELTWMLLHQVFSFNSPVWFNVGTPAPQQVSACFILSVDDTMESILN 170

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 171 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF++ +    D  R   D      +    +  V           
Sbjct: 230 RAAKMVVLDVDHPDIVEFVETKAREEDKIRALRDAGFDMDLGGRDIASVQYQNANNSVRV 289

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +      + G  F++          R + +    I A  L+R +    +    P I + 
Sbjct: 290 TDEFMRAVVDGSSFDLR--------ARLDGRTIETIDAKGLFRTIAEAAWACADPGIQYD 341

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
              N        G + +SN C+E        + + CNL S+NLL     ++ FD +   +
Sbjct: 342 GTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASLNLLTFLRPDRTFDAEGFVA 397

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I        +       +R +G+G     + L      Y S     +A
Sbjct: 398 AVELIITAMDISICFADFPTPEITAVTRAYRQLGIGYANLGALLMASARAYDSDGGRALA 457

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739
                 ++  A   S ELA   GAY  F  +                 VR    ++  + 
Sbjct: 458 ASITSLMTATAYRRSAELAGIVGAYDGFARNADAHRRVVRKHSAANDAVRSVHTEDTRVL 517

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG- 797
             +   W   +      G RN+    +APT TI       +  I+P    + +K  + G 
Sbjct: 518 AAASKEWARAQTLGDKHGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGA 577

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATA---FEID 852
              +VN  +   L+     +E + + +      G + +   +  +   +   A     I 
Sbjct: 578 SMRIVNQTVPAALRALGYPEETLEAIVEFIAEHGHVVDAPGLRPEHYDVFDCAIGERAIS 637

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   +  Q ++  A S  + +    + ++++ IY + W +GLK     R       
Sbjct: 638 PMGHVRMMAAVQPFLSGAISKTVNMPSTATVEEVEEIYLEGWRLGLKALAIYRDNCKVGQ 697

Query: 912 EKSTLKGVD 920
             S ++G  
Sbjct: 698 PLSDVRGAK 706


>gi|227504051|ref|ZP_03934100.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199381|gb|EEI79429.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 745

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 151/675 (22%), Positives = 276/675 (40%), Gaps = 79/675 (11%)

Query: 266 ARLLHESMMD------FDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLHING--SRI 314
             L+     +      ++  +L       +     F  +LG    +  Y L      + +
Sbjct: 95  EWLVDNEYYERGFLELYEDEFLCAIYDRAHRAQHRFRTFLGAFKFFTSYALKTFDGSTLL 154

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
           E  +    RV           +  A +  + + S  F  +TPT  N+G     ++ SCFL
Sbjct: 155 EGYEE---RVTTTALYLAQGDKALAEKLVDDIMSGRFQPATPTFLNAGKAQRGEMVSCFL 211

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             + D+L  I  ++     L+K  GG+    + +R  GA I     ++ GV+P +K+  D
Sbjct: 212 LRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPIKKIENQASGVVPVMKILED 271

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +  
Sbjct: 272 SFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFRLA 331

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +N    LFSP +++  + +   +     E+Y+       I     I A   +  +  + 
Sbjct: 332 KENKDMHLFSPYDIAREYGVPMSDMS-ITEHYDELVTNPRISHT-TIKAREFFTTLAELQ 389

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCN 601
           FE+G+P+I F+D  N  +P    G ++ SNLC+EI               ++  +   CN
Sbjct: 390 FESGYPYILFEDTVNRSNPL--KGHINMSNLCSEILQVNAPSTLDPSGNYATIGQDISCN 447

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+   F +         +T+ TAVR L  V ++ +   +    K N +  AIGLG 
Sbjct: 448 LGSLNIAKAFESP-----DFGATVETAVRALTQVSELTDIEAVPSIAKGNESMHAIGLGQ 502

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y   EA++  +     +++HA+  S  LA E+   +  F+ S +  G
Sbjct: 503 MNLHGFLASKRIHYGCAEALDFTNFYFLTVTYHALRTSHALAVEKGQRFQGFEDSAYASG 562

Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            F    +          + ++  E  +   +R  W +LK +V   G+ N+   A+ PT +
Sbjct: 563 AFFDKYLKQEWVPATKRVEQLFHEAGVRIPTREDWLKLKNQVARDGIYNAYLQAVPPTGS 622

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++     G                 + ++ +          
Sbjct: 623 ISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP---------GMTNDNV---------- 663

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
                       +    +F +    +I++ +   + +DQ  SL L+   + + + ++   
Sbjct: 664 ------------EYFEDSFTVGYEKIIDTYAMATQHVDQGLSLTLFFTADSTTRDINRAQ 711

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 712 IYAWKAGIKTLYYIR 726


>gi|81428552|ref|YP_395552.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610194|emb|CAI55243.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 723

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 164/710 (23%), Positives = 284/710 (40%), Gaps = 74/710 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    ++  +      + L         E   +A  L    +DF +  L   L  ++D
Sbjct: 35  EALEAFLEQNVQPNMVTFKSLQDRLNYMVAENYYEADFLKAYSIDF-MERLNQYL-IDQD 92

Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           F F  ++     Y +Y L  N +   + + F  RV           E  A+   + +   
Sbjct: 93  FHFKSFMAAYKFYAQYALKTNDNGFYL-EDFKDRVFTNALYFADGDEALAMSVADEMIHQ 151

Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+  +R  +L SCFL    DD+  I   +     L++  GG+G   + +R
Sbjct: 152 RYQPATPTFLNAGRSRRGELVSCFLLQTTDDMNSIGRTINSALQLSRIGGGVGISLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
           G G  I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H DV  FL  +K 
Sbjct: 212 GAGDPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDVVAFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD + + V ++A   LFSP  V      YG+ F       E  
Sbjct: 272 NADEKYRLKTLSLGLTVPDKYYELVKEDADMYLFSPYSV---EREYGQPFSYIDITAEYD 328

Query: 529 A-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E     KI A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+E
Sbjct: 329 NLVANEAIKKTKIKARDLENEISKLQQESGYPYIVNIDTANKANPI--DGKIIMSNLCSE 386

Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           +          + +E  V     S NL +    N         +I T VR L  V D  +
Sbjct: 387 VLQVQTPSQINNRQEYDVLGTDISCNLGSTNIPNMMTSPDFGHSIETMVRSLTYVTDHSD 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N     IGLG MG  +      + Y S E+++        +++  + AS 
Sbjct: 447 IDVVPSVAHGNQLAHTIGLGGMGLHTYFAKNQMMYGSEESIDFTSNYFMLLNYWTLVASN 506

Query: 700 ELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           ++A+ERG  + +F+ S +  G +       +     A+V+     +   ++  W  LK+ 
Sbjct: 507 KIAKERGITFDNFENSKYADGSYFDQYLNTEWAPKTAKVKGLFDGVFIPTQADWAALKEA 566

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811
           +   G+ + N +A+AP  +I+ I   S S+ P    +  +     G              
Sbjct: 567 IMQDGLYHQNRLAVAPNGSISYINDTSASLQPIVNRVEDRQEKKIGTIYYPAP------- 619

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
              L +E M                        + +A++ID   +I+  +  QK +DQ  
Sbjct: 620 --GLSNETM----------------------PYYESAYDIDMRKVIDIYAAAQKHVDQGM 655

Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           S+ L++                   + + L+ +   A    +K+ YY+R+
Sbjct: 656 SMTLFMRSTIPAGLYDWKDGRTDKMTTRDLNILRNYAHHKSIKSIYYIRT 705


>gi|15675307|ref|NP_269481.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes M1 GAS]
 gi|71910936|ref|YP_282486.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS5005]
 gi|13622485|gb|AAK34202.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes M1 GAS]
 gi|71853718|gb|AAZ51741.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS5005]
          Length = 719

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 160/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      E     I          +      +  L + +K
Sbjct: 28  LHKDKEALKAFSAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEFITELDSIIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            E      ++     Y +Y L  N     +E  +    RV          +E  A +   
Sbjct: 88  SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F     
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                      K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379

Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    +                  CNLGS N+L    +          +I+T  R
Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     
Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740
           +++  +  S  +A+ER   +  F+ S +  G +    +         L+ ++  +  + +
Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQ 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799
            S   W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G  
Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                                                +  D    + +A+++D   +I+ 
Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|328951135|ref|YP_004368470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451459|gb|AEB12360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinithermus hydrothermalis DSM 14884]
          Length = 955

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 147/622 (23%), Positives = 241/622 (38%), Gaps = 92/622 (14%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVA 431
              VPDD+ GI  +  +    AK       D++ +R  GA I G+ G S G + FL ++ 
Sbjct: 204 ALEVPDDMGGIIRSAAQAVAQAKEGYEPHVDFSQLRPEGAPIKGSGGTSSGPVSFLLEIF 263

Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           ++     N                        QGG R+GA  A L   H D+ +FL  + 
Sbjct: 264 DNFLEWANLGAEAAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKD 323

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE--- 523
              +         N +  + D F K +  +A W +  P EV   +  Y    E  Y    
Sbjct: 324 LDREAAEGDISTFNISILVTDTFWKALEADALWPVT-PVEVPGKY--YPYPLEEPYTGTL 380

Query: 524 ----NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-- 577
               + E    R       K+ A  LW ++    + TG P + F D  N  S  + +G  
Sbjct: 381 PELPDREADGARAIPLYDGKVPAKWLWHEIAWHAWATGEPGLIFIDRVNDLSALKGLGER 440

Query: 578 -VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
             + S+N C EI L         C+LG++NL A+     FD++     +R AVR LDNV+
Sbjct: 441 YRIRSTNPCGEIPLTVG----EPCDLGAMNLAAYVREGAFDFEAFRRDVRIAVRFLDNVL 496

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D+N   +E  + ++   R +GLG+MG   AL  + +PY S  A E   E M  +   AI 
Sbjct: 497 DVNKFALEDNRAASQKLRRLGLGVMGLADALIKMGLPYDSEAAREQVYEIMSVLREEAIR 556

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
           AS  LA+ERG +      L+ +     + +G+                            
Sbjct: 557 ASEALAEERGVFP-----LYAEEQAYFEKLGIRP-------------------------- 585

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL------ 810
             RN   + +APT T + + GVS  I+P Y     +   S    +++      +      
Sbjct: 586 -RRNVALLTVAPTGTTSMLMGVSSGIEPVYSPFVWRRIGSEYKPLLHPLFQELMAQFPPH 644

Query: 811 ----KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
               K      + +I  ++ + GS+  +E IP+ ++++   A ++ P+  +      Q+ 
Sbjct: 645 PEYAKDGGWDWDKLIEAIQENHGSVEGLEMIPEAIRRVFRCAHDVAPLDHVRMQGVVQRA 704

Query: 867 ID------QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            D       + S  + L +E S   ++  Y +A+  G K     R  S      S  K  
Sbjct: 705 FDAEGYAGNSLSKTINLPNEASVADVEAAYTEAYRTGCKGITVYRDGSREFQVLSVKKEE 764

Query: 920 DGKLNAVPVTDPNSSTHSLGIP 941
                  P +  +        P
Sbjct: 765 KEAKTPQPASASSEPAAPTSRP 786



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 64/177 (36%), Gaps = 37/177 (20%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFH 350
           F+     I   +Y    +G         F RVA  +AL E E  +E+ A  FY L+++  
Sbjct: 6   FDEHAQAIARRQYMQEGDGDVF----GMFRRVANWVALPEKEAERERWAQRFYELMATKR 61

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDL----YGIFGALQENAMLAKYSGGLGNDWTP 406
           F      L  +GT H  + +CF+            GI    ++ A++ K  GG G +  P
Sbjct: 62  FCPGGRVLAGAGTAHGNVLNCFVQGATQHPPASFEGIMEVAEKLALVTKVGGGNGVNLDP 121

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
                                         A  + G  +G    YL   H DVE+F+
Sbjct: 122 YVSR-------------------------GATKRTGTVRGWA--YLRADHPDVEDFI 151


>gi|241895722|ref|ZP_04783018.1| ribonucleotide reductase, alpha subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871089|gb|EER74840.1| ribonucleotide reductase, alpha subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 736

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 159/717 (22%), Positives = 287/717 (40%), Gaps = 78/717 (10%)

Query: 227 KLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           +L++  E L    ++  K    +   +    F   I      + +        +  L   
Sbjct: 42  QLQKDTEALQAFIQENVKPNTKQFNSVQDR-FDYLIANDYVDQKMVNKYTMTFIEKLYAY 100

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           L+ +      ++     Y +Y L  N     IE       R+ M +       E  A+  
Sbjct: 101 LESQNFQFKSFMAAYKFYAQYALKTNDGDYYIENYND---RIVMNVLFYANGDETLAMNL 157

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            + +    +  +TP+  N+  +R  +L SCF+  V DD+  I   +     L+K  GG+G
Sbjct: 158 ADEMIHQRYQPATPSFLNAGRSRRGELVSCFILQVTDDMNAIGRVINSALQLSKIGGGVG 217

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
              + +R  GA I G    + GV+P +K+  D+    NQ G+R GA   YL  +H D+  
Sbjct: 218 IVLSNLREAGAPIKGIANAASGVVPVMKLLEDSFSYSNQMGQRNGAGVVYLSVFHPDIMS 277

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FL  +K   D++ R   ++    +PD F + +  N+   LFSP    D+  +YGK F   
Sbjct: 278 FLATKKENADEKIRVKTLSLGLTVPDKFYELLKNNSDMFLFSP---YDVERVYGKPFNYV 334

Query: 522 YENYERQAD-RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
               E  A    +    +KI A  L  ++  +  E+G+P+I   D  N  +P    G + 
Sbjct: 335 DITAEYDAMVANKQIRKKKIRARELETEISKLQQESGYPYIINIDTVNAANPI--AGKII 392

Query: 581 SSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           SSNLC+EI        +N+      +    S NL +    N         ++   VR L 
Sbjct: 393 SSNLCSEILQVQRASQINNEQTYDELGTDVSCNLGSTNIVNMMATKNFGKSVDAMVRALT 452

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   +  N    AIGLG MG  +     H+ Y   EA++  +     +++
Sbjct: 453 FVSDQTDLDIVPSVRLGNRQTHAIGLGAMGLHAFFAKNHMYYGDEEALDFTNAYFLMLNY 512

Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLP 745
           +++ AS  +A+ER + +  F+ S +  G +    I      + +         +  ++  
Sbjct: 513 YSLVASNNIAKERQSSFYEFEKSTYASGAYFDKYINEDWSPKTDKVKEIFSVHHFPTKED 572

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W  L + VK  G+ N+  MAIAPT +I+ +   + S+ P    +  +     G       
Sbjct: 573 WVALAESVKQYGLYNAYRMAIAPTGSISYVNDATASLHPIINRVEERQEKKIGKIYYPAP 632

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L                            + +P      + +A+ +D   +I+  +  Q
Sbjct: 633 YL--------------------------GTDTLP-----YYESAYNMDMRRVIDVYAAAQ 661

Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           + IDQ  +L L++                   + + L+ +   A+  G+K+ YY+R+
Sbjct: 662 QHIDQGMALTLFMRSTIPAGLYDWKDGHTEKMTTRDLNILRLYAYQKGIKSIYYIRT 718


>gi|94994622|ref|YP_602720.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10750]
 gi|94548130|gb|ABF38176.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10750]
          Length = 719

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 161/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      E     I          +      +  LA+ +K
Sbjct: 28  LHKDKEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEFITELASIIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            E      ++     Y +Y L  N     +E  +    RV          +E  A +   
Sbjct: 88  SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F     
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                      K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKTNPI--DGKIIMS 379

Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    +                  CNLGS N+L    +          +I+T  R
Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     
Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740
           +++  +  S  +A+ER   +  F+ S +  G +    +         L+  +  +  + +
Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQ 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799
            S   W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G  
Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                                                +  D    + +A+++D   +I+ 
Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|313892094|ref|ZP_07825690.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister
           microaerophilus UPII 345-E]
 gi|313119486|gb|EFR42682.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister
           microaerophilus UPII 345-E]
          Length = 730

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 173/750 (23%), Positives = 306/750 (40%), Gaps = 78/750 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E +    K   + +  +   L  E     ++       +        +  +   +  E 
Sbjct: 31  KEAVQEYIKTQIEPSMMKFSTL-EEKLKYLVDNNYYDEEILNRYSKTFIREI-YAIGKEY 88

Query: 290 DFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F   +G    Y  Y L  +  +  + + F  R  M         E  A      + S
Sbjct: 89  DFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKNLVGDILS 147

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             F  +TPT  N+G +   +  SC+L  + D++  I   +  +  L+K  GG+    T +
Sbjct: 148 NRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLTNL 207

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R   A I G   +S GV+P +K+  DT    NQ G+R+GA   YL   H ++ +FLD ++
Sbjct: 208 REGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDTKR 267

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD+  +   +     LFSP    D++ +YGK         E 
Sbjct: 268 ENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDIYKVYGKPMTDISITKEY 324

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC- 585
           +      KV +  I+A   ++ +  + FE+G+P+I ++D  N R+P +  G +  SNLC 
Sbjct: 325 ENLLRNDKVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRIVMSNLCS 384

Query: 586 -----------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                      TE        +   CNLGSIN+         D       I  AV  LD 
Sbjct: 385 EIAQVSTASTYTEDMSYYHVGQDICCNLGSINIAEAMK----DGKNFGEMIGRAVEALDR 440

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V    + +     K+ N  + AIGLG M     L   HI Y +PEAV+  D      +++
Sbjct: 441 VSRASDLNCAPSIKRGNEENHAIGLGAMNLHGFLSTHHIYYDTPEAVDFTDMFFYATAYY 500

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRTSRLP 745
           A  AS  +A ++GA++ F  S +  G +       L         E+ ++      ++  
Sbjct: 501 AFKASHYMAMKKGAFTGFADSEYADGSYFKKYTEELNAPKTERVKELFEKYNFYIPTQED 560

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L + +K  G+ N++ +A+APT +I+ +   + S+ P    + V+         V ++
Sbjct: 561 WKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRVYVPAY 620

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQ 864
                                          I D+  K +   A+E+ P  +I+ A+  Q
Sbjct: 621 ------------------------------EIDDENYKYYEKGAYEVGPDAIIDVAAAAQ 650

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           K +DQA ++ L++    + + L+  Y +A+     + YY+R      + +  L+G +   
Sbjct: 651 KHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVR------IRQDVLEGSE--- 701

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                 + +   +      +C    EC+ C
Sbjct: 702 ---KFEEDSIIKNENKEVRNCDGSEECQTC 728


>gi|203288576|ref|YP_002223483.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           duttonii Ly]
 gi|201084283|gb|ACH93871.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           duttonii Ly]
          Length = 707

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 165/712 (23%), Positives = 305/712 (42%), Gaps = 69/712 (9%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++ L  +    ++     ++   P     Y+ +       ++   +  ++ +   
Sbjct: 35  FYRLEKD-LEALSVFLEEIKSKSLKFENPNERMHYLIDNNLYEDFYQKYSEDQILEIYKA 93

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           ++ E      Y+     Y  Y L +  +  E  +   + V++ LA         A+    
Sbjct: 94  VEGEEFKFKSYMSASKFYKDYALKVKDTYFESYEDRIIAVSLFLA---DGCFDFALRLAL 150

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TPT  N+G     +L SCFL  V D L  I   +     L+K  GG+  +
Sbjct: 151 DMIKQRYQPATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALN 210

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G  I G    ++GVIP +K+  D     +Q G+RKGA   YL  +H D+E+FL
Sbjct: 211 LSNIRARGEEIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFL 270

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL--YGKEFEIA 521
           D +K   D++ R   ++    IPD F +   Q+  +   +P  V     L     +F+  
Sbjct: 271 DTKKINADEKSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFDKD 330

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y             + ++ISA  +  ++  + FE+G+P+I ++  CN+  P + VG V  
Sbjct: 331 Y----DLLASNPRIIKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKM 386

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI    +                  C LGS+N++    +          T+  A+
Sbjct: 387 SNLCTEIFQIQTPSVIGNYGEGDVIGYDVSCILGSLNIVNVINS------DFEFTVDLAM 440

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L +V+D    +     +K+N  +RA+GLG+M     L    IPY S EA++       
Sbjct: 441 RALTSVVDKSCINNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFM 500

Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRT 741
            ++F+++ +S+ +A+ER + +  FK S +  G +    +      R E+       +   
Sbjct: 501 LLNFYSLKSSMNIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIP 560

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S+  W+ LK  ++  G+ ++  +A+APT +I+ I   + S+ P  + +  +   +     
Sbjct: 561 SKSDWNNLKGDIQRYGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYY 620

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  E            + +                      +A+ +D   LI+  S
Sbjct: 621 PMPYLSRE------------NAI-------------------FFKSAYYMDMRKLIDLVS 649

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ +DQ  S  LY+ +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 650 EAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 701


>gi|251782829|ref|YP_002997132.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391459|dbj|BAH81918.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323127634|gb|ADX24931.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 719

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 162/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%)

Query: 228 LRREVLTTVYKKPQKATHHEMQCLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      E     I          +      +  LA+ +K
Sbjct: 28  LHKDKEALEAFFTENVLPNTMSFASVTEKIEYLISNDYIESAFIQKYRPEFITELADVIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            E      ++     Y +Y L  N     +E  +   M  A+  A      E  A +   
Sbjct: 88  AENFQFKSFMAAYKFYQQYALKTNDGDYYLESLEDRVMFNALYFA---DGNEALAKDLAI 144

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F     
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                      K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379

Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    +                  CNLGS N+L    +          +I+   R
Sbjct: 380 NLCSEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTR 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +   K  N      GLG MG  S L   HI Y SPE+VE  D     
Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740
           +++  +  S  +A+ER   +  F  S +  G +    +         L+ ++  +  + +
Sbjct: 495 MNYWTLVESNNIARERQTTFVGFDKSKYADGTYFDKYVTGQFVPKSDLVKDLFKDHFIPQ 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799
            S   W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G  
Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                                                +  D    + +A+++D   +I+ 
Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|306827105|ref|ZP_07460400.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus
           pyogenes ATCC 10782]
 gi|304430700|gb|EFM33714.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus
           pyogenes ATCC 10782]
          Length = 719

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 161/717 (22%), Positives = 284/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA+ +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELASIIKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV          +E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F        
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382

Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +         L+  +  +  + + S 
Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAS- 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             +  D    + +A+++D   +I+  + 
Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|209559613|ref|YP_002286085.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes NZ131]
 gi|209540814|gb|ACI61390.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Streptococcus pyogenes NZ131]
          Length = 719

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 160/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      E     I          +      +  L + +K
Sbjct: 28  LHKDKEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEFITELDSIIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            E      ++     Y +Y L  N     +E  +    RV          +E  A +   
Sbjct: 88  SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F     
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                      K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379

Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    +                  CNLGS N+L    +          +I+T  R
Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     
Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740
           +++  +  S  +A+ER   +  F+ S +  G +    +         L+ ++  +  + +
Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQ 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799
            S   W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G  
Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                                                +  D    + +A+++D   +I+ 
Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|18138465|ref|NP_542569.1| ribonucleotide reductase [Halorubrum phage HF2]
 gi|32453892|ref|NP_861655.1| ribonucleotide reductase [Halovirus HF1]
 gi|18000406|gb|AAL54989.1| ribonucleotide reductase [Halorubrum phage HF2]
 gi|32346460|gb|AAO61366.1| ribonucleotide reductase [Halovirus HF1]
          Length = 805

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 155/707 (21%), Positives = 270/707 (38%), Gaps = 113/707 (15%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFN 360
             +     G+ IE     F RVA  +A  E +   +  A EF + + +  FM ++PTL N
Sbjct: 44  RYFRKDSEGNIIEGADDLFRRVAENVAGAEEDGDFDTWADEFEHQMKTLRFMPNSPTLMN 103

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           +GT   QLS+CF+    DD+  IF   Q+ A++ +  GG+G  ++ +R  GA I+ T G+
Sbjct: 104 AGTDMNQLSACFVIEPRDDMEDIFETAQQAALIFQSGGGVGYAFSHLRPKGAFINSTGGE 163

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           + G + F++V ++T   V QGGKR+GA    L   H D+  F+  ++N G+      + N
Sbjct: 164 ASGPVSFMRVFDETCNQVKQGGKRRGAQMGILRADHPDIGRFIVAKRNEGE----FANFN 219

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDL------------------------------ 510
            +    D F++ V     +TL+ P+   +                               
Sbjct: 220 ISVATTDNFIEAVDAQESYTLYDPETDYEEPYTVRELSAHFYSPEYQDNPRDAFDDGEGA 279

Query: 511 ---------------HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
                           +LYG+   +  +    +  R E+    ++ A  +W  M+   + 
Sbjct: 280 VVEENLWRDYADEIECELYGERVTLREKWEGHEGLRLEVGEPMELPAAFIWDVMIDGAWR 339

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-------- 607
            G P +   +  N +               T         E   CNLG INL        
Sbjct: 340 NGEPGLFNFEESNRQHSFDVEEYPEFRMNATNPCAEQMLVEYEACNLGHINLSLMLSEDA 399

Query: 608 ------------------------LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
                                   +  +     D+++L  TI    R LDNV+  +   I
Sbjct: 400 PTYDEFLSDKLEDVASGDLSTREAVEWYFETAVDFNELDRTIEAGTRFLDNVVTQSDFPI 459

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +  +     R IGLG+MGF   L+ + +PY + ++ E+A   M +I      AS  LA 
Sbjct: 460 PEITERVGGMRKIGLGIMGFAQMLYQMGVPYGTQDSYEVARCVMRYIDRRGTWASHRLAL 519

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERGA+S +  S +       +        R  L     +               +RN N 
Sbjct: 520 ERGAFSYWDKSKYADPTEYDEWFA----ARTGLDPEDWAGGFP-----------IRNHNI 564

Query: 764 MAIAPTATIANICGVSQSIDPS-----YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
             IAPT T + I   +   +P+     ++N+             + + +  L++ DL  +
Sbjct: 565 TTIAPTGTTSMIGNTTGGCEPAYNVANFKNVSEDIQGDDLLVEFDDYFLRTLEENDLDVD 624

Query: 819 AMISD----LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           A+  +    ++ ++    N   IPD++ +I  T  ++            Q++ D   S  
Sbjct: 625 AVKEEAETLMRNNEFDGVNDLSIPDEIAEIFVTTQDLSSEQHGLMQRAFQEFCDSGISKT 684

Query: 875 LYL-DEPSGKKLDFIYRQAWLMG-----LKTTYYLRSRSATSVEKST 915
           + L +E +   +   Y+ A   G     +K     R  S      +T
Sbjct: 685 VNLPNEATHDDVADAYQLALDEGRRGAVIKGLTVYRDGSRDQQVLTT 731


>gi|52080344|ref|YP_079135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           licheniformis ATCC 14580]
 gi|52785723|ref|YP_091552.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           licheniformis ATCC 14580]
 gi|319645871|ref|ZP_08000101.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp.
           BT1B_CT2]
 gi|52003555|gb|AAU23497.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348225|gb|AAU40859.1| NrdE [Bacillus licheniformis ATCC 14580]
 gi|317391621|gb|EFV72418.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp.
           BT1B_CT2]
          Length = 700

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 156/701 (22%), Positives = 295/701 (42%), Gaps = 66/701 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E + + +             L  E     I+               ++  +  +   ++
Sbjct: 30  KEAVHSYFVDYINQNTVFFHDL-KEKIDYLIKNDYYEEEFLSRYTFEEIKEVFKEAYAKK 88

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y+ Y L  N     +E  +    R+++         +++A EF  ++ 
Sbjct: 89  FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDKEKAKEFVRMMI 145

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  STPT  N+   R  +L SCFL  V D L  I  A+  +  L+K  GG+  + + 
Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  I      ++GV+  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +
Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K + D+  R   ++    IPD F++   ++    +F P  V   +  +  E +   E Y+
Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFIELAREDKAAYVFYPHTVYKAYGEHLDEMD-MNEMYD 324

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           R  +   +K  + I    +  K+  +  E+G+P+I F+D  N      H+  V  SNLC+
Sbjct: 325 RLVEDPRVKKEK-IHPRKMLEKLAMLRSESGYPYIMFQDNVNNVHANNHISKVKFSNLCS 383

Query: 587 EITL------NSSSEETA------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E+         +   +         CNLGS+N+L    N       L  T++ A   L +
Sbjct: 384 EVLQASQVSSYTDYGQEDEIGLDISCNLGSLNILNVMKN-----KSLEQTVKLATDSLTH 438

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V +  N       KK+N   ++IGLG M     L   +I Y S EA + A+     ++F+
Sbjct: 439 VSETTNITNAPAVKKANKAMKSIGLGAMNLHGFLAQNNIAYESEEARDFANTFFMMMNFY 498

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPW 746
           +I  S E+A+E+   Y  ++GS +  G +       D      +V      M+  ++  W
Sbjct: 499 SIERSAEIAKEKGETYHGYEGSAYATGEYFEKYVTQDFSPKFEKVAKLFEGMHIPTKEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
            +LK+ VK  G+ +S  + IAPT +I+ +   + S+ P  + +  ++  +          
Sbjct: 559 KQLKQFVKEHGLYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP---- 614

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                      +  +       +  A+++D   +++  S  Q+ 
Sbjct: 615 ---------------------------MPGLAPSNWFYYKEAYDMDMFRVVDMISTIQQH 647

Query: 867 IDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +DQ  S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 648 VDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 688


>gi|21910585|ref|NP_664853.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS315]
 gi|28895724|ref|NP_802074.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes SSI-1]
 gi|21904786|gb|AAM79656.1| putative ribonucleoside-diphosphate reductase 2 alpha subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810973|dbj|BAC63907.1| putative ribonucleotide reductase alpha-chain [Streptococcus
           pyogenes SSI-1]
          Length = 719

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 160/717 (22%), Positives = 283/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV          +E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F        
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382

Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +         L+  +  +  + + S 
Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAS- 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             +  D    + +A+++D   +I+  + 
Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|331703802|ref|YP_004400489.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma
           mycoides subsp. capri LC str. 95010]
 gi|328802357|emb|CBW54511.1| Ribonucleoside diphosphate reductase alpha subunit [Mycoplasma
           mycoides subsp. capri LC str. 95010]
          Length = 723

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 166/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%)

Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           +  +  ++R+ I    +         A   L+         +  + +K +  + +  Y  
Sbjct: 18  DEYIKLNARSKIFSKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 68

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                +E       +        +  L +           ++G    ++ Y L    + +
Sbjct: 69  ----LLENQYYDSEIVNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 124

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
            +      RV M           +A      +    F  +TPT  N+  +H  +  SC+L
Sbjct: 125 YLETYT-DRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 183

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D++  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D
Sbjct: 184 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 243

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    +Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +  
Sbjct: 244 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 303

Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             N    LFSP +V  +++         E  YE  E       IK    ISA   +  + 
Sbjct: 304 RDNKDMALFSPYDVQKVYNKPLSDISITEKYYEILE----NPNIKKT-YISARKFFLTVA 358

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I F+D  N R+     G +  SNLC+EI   S++ E              
Sbjct: 359 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDI 418

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+     +      + + +I  A+  LD V  + +       +K N  + A+G
Sbjct: 419 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVG 474

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L    I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S + 
Sbjct: 475 LGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFA 534

Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G           D        + E+  +  +   S+  W +L + +K  G+ NS+ MA+
Sbjct: 535 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIKLVEEIKKTGLANSHLMAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + V+         V ++ +N                 Y
Sbjct: 595 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 643

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
             G                  A+E+ P  +I   +  Q+ +DQA SL L++ +  + + L
Sbjct: 644 AMG------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 685

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +  Y  A+  G  + YY+R
Sbjct: 686 NKAYVNAFKQGCSSIYYVR 704


>gi|332638432|ref|ZP_08417295.1| ribonucleotide-diphosphate reductase subunit alpha [Weissella
           cibaria KACC 11862]
          Length = 723

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 159/710 (22%), Positives = 293/710 (41%), Gaps = 72/710 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    ++       +   L  + F   I      + + +      +  L + LK + 
Sbjct: 34  KEALDAFIRENVVPNTLQFDSL-RDRFDYLIAHDFVDQKMLQQYSFNFITRLYDYLKAQ- 91

Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F  ++     Y +Y +  N S   +      R+AM         E+ A+   + +  
Sbjct: 92  DFQFKSFMAAYKFYAQYAVKTNDSEYYVENY-IDRIAMNALFYGAGNEELAMNLADEMVH 150

Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+  +R  +L SCF+    DD+  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRSRRGELVSCFILQTTDDMNAIGRVINSALQLSKIGGGVGINLSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA I G +  + GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPIKGISNAASGVVPVMKLLEDSFSYSNQMGQRNGAGVTYLSVFHPDIMSFLATKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F   +  NA   LFSP +V   +      +      Y+ 
Sbjct: 271 ENADEKVRVKTLSLGVTVPDKFYDLIRSNADMFLFSPYDVEREYGE-PFNYIDITAEYDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +IK ++ I A  L  ++  M  E+G+P++   D  N  +P    G V SSNLC+E
Sbjct: 330 MVANPKIKKYK-IRARDLENEISKMQQESGYPYVINIDTVNAANPIH--GKVISSNLCSE 386

Query: 588 ITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I     + E              S NL +    N       A ++ T +R L  V D  +
Sbjct: 387 ILQVQKASEIDNEQQYVTMGSDVSCNLGSTNIVNMMATTDFARSVETMMRALTFVSDNSD 446

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   +  N    A+GLG MG  +     H+ Y   EA++  +     ++++ + AS 
Sbjct: 447 LDIVPSVQNGNRELHAVGLGAMGLHAFFAKNHMYYGDEEALDFTNVYFLMLNYYTLLASN 506

Query: 700 ELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           ++A+ER  ++  F+ S +  G +       D     A+V++     +  ++  W  LK+ 
Sbjct: 507 KIAKERGESFYEFEKSAYADGSYFNKYLMADWSPKTAKVQEIFEQHHFPTKHDWAMLKES 566

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811
           V+  G+ N+  +AIAPT +I+ +   + S+ P    +  +     G       +L     
Sbjct: 567 VQKHGLYNAYRLAIAPTGSISYVNDSTASLHPIINKIEERQEKKIGKIYYPAPYL----- 621

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                  + +P      + +A+ +D   +I+  +  Q+ IDQ  
Sbjct: 622 ---------------------GTDTLP-----YYESAYNLDMRKVIDVYATAQQHIDQGM 655

Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           +L L++                   + + L+ +   A+  G+K+ YY+R+
Sbjct: 656 ALTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRMYAYHKGVKSIYYVRT 705


>gi|50914443|ref|YP_060415.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS10394]
 gi|50903517|gb|AAT87232.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS10394]
          Length = 719

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 160/717 (22%), Positives = 283/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV          +E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F        
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382

Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQTPSLINDTQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +         L+  +  +  + + S 
Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAS- 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             +  D    + +A+++D   +I+  + 
Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|293556437|ref|ZP_06675015.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
 gi|291601401|gb|EFF31675.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecium E1039]
          Length = 625

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 152/649 (23%), Positives = 268/649 (41%), Gaps = 81/649 (12%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +     Y++Y +  N     +      RV           +  A +    L S  +  +T
Sbjct: 1   MAAYKFYNQYAMKTNDLEFYLENFE-DRVVFNALYLGNGDKDLAFKLLEELISQRYQPAT 59

Query: 356 PTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           PT  N+G +   ++ SCFL  + D +  I   L     L++  GG+G + + +R +GA I
Sbjct: 60  PTFLNAGKKRRGEMVSCFLIDIDDSMLSIGRNLNSALQLSRIGGGVGVNLSNLRAMGAPI 119

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                 S GV+P +K+  D+    NQ G+R GA   YL  +H D+  FL  +K   D++ 
Sbjct: 120 KEIANASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILNFLSTKKENADEKI 179

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    +PD + + +  N    LF+P     +  +YG  F       E        
Sbjct: 180 RVKTLSLGLIVPDKYYELLKTNQPMYLFNP---YHVERVYGIPFSYVDLTKEYDNMVVND 236

Query: 535 KVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            + +  I+A  L +++  +  E+G+P+I   D  N  +P    G +  SNLC+EI     
Sbjct: 237 TIEKTVINARELEQEISRLQQESGYPYIINIDTANRTNPV--KGKIIMSNLCSEILQPQE 294

Query: 594 SEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640
             +               CNLGS+N++    +          +I  AVR L  V D ++ 
Sbjct: 295 PSKLNADLNYKQVGTDISCNLGSMNMVNLMKS-----SDFGKSIEYAVRALTTVTDQVHI 349

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +    K N  +  IGLG MG  +AL L  + Y S EA+E  D     ++++ + AS +
Sbjct: 350 EEVPTVSKGNALYHTIGLGAMGLHTALALNGLDYESEEALEFVDAFFLAMNYYTLKASHQ 409

Query: 701 LAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRV 753
           +A E+  A+  F+ S +  G +    +    E + +        ++  +   W +LK+ +
Sbjct: 410 IAVEKSEAFHDFESSHYADGTYFDKYLEKDFEFQFDKVNEIFKQISLPTVSDWQQLKEDI 469

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812
              G+ + N +AIAP  +I+ I   S S+ P  Q +  +     G       +L N    
Sbjct: 470 MHDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQEKKVGSIFYPAPYLSN---- 525

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                                         + + TA+ +D   +I+  ++ Q+ IDQ  S
Sbjct: 526 ---------------------------KTLRYYKTAYNMDQRKIIDIYAKAQQHIDQGMS 558

Query: 873 LNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           L L++                   + + L+ +   AW  G+K+ YY+R+
Sbjct: 559 LTLFMRSVLPEGVYEWKSPGNSQLTTRDLNRLRNYAWTKGIKSLYYVRT 607


>gi|199598383|ref|ZP_03211802.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus HN001]
 gi|199590702|gb|EDY98789.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus HN001]
          Length = 723

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 156/711 (21%), Positives = 284/711 (39%), Gaps = 74/711 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL--KY 287
           +E L     +       +   L  E     +E         +      L  L   L  ++
Sbjct: 34  KEALQAFLTENVAPNTMKFASL-QERLKYLVEHHYYEADFLKKYQPAFLEKLNQFLTAQH 92

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            +  +F                    +E  +    RV           E  AV+  + + 
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDETQYLEDYKD---RVFANALFFADGNEDLAVDLADEMI 149

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G     +L SCFL  + DD+  I  A+     L++  GG+G   + 
Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 210 LREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD + + +  NA   LFSP  V   +      +    + Y+
Sbjct: 270 KENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGK-PFSYVDITKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +     +IK ++ I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 329 KMVANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI          + +E  V     S NL +    N         ++   VR L  V D  
Sbjct: 386 EIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGHSVEAMVRALTYVTDHS 445

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS
Sbjct: 446 NIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTLKAS 505

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751
            ++A+ER  ++ +F+ S +  G +              +VRD    ++  ++  W  LK+
Sbjct: 506 NKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQALKE 565

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N MA+AP  +I+ I   S S+ P    +  +     G             
Sbjct: 566 DVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAP------ 619

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               L ++ M                        + +A++ID   +I+  +  Q+ +DQ 
Sbjct: 620 ---GLSNDTM----------------------PYYQSAYDIDMRKVIDVYAAAQQHVDQG 654

Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            ++ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSIYYIRT 705


>gi|242372964|ref|ZP_04818538.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W1]
 gi|242349290|gb|EES40891.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W1]
          Length = 698

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 165/709 (23%), Positives = 287/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + +     + ++  +      Y   F +Y EE ++        + F
Sbjct: 29  DQEALKVYLEEIHDKTI-YFDDEIERLHYLVDNNFYFNVFEKYTEESLREITEFAKSIHF 87

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 88  QFASYMSASKFYKDYALKTNDKSQFLEDYNQH---------------VAIVALYLANGDT 132

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 133 KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 313 DDIDLEKYYDDMVANPNIEKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 368

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ 
Sbjct: 369 SNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVH 428

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 429 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 488

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER   Y  F+ S +  G +       +      +VR     +
Sbjct: 489 FFMMMNYYSIERSMEIAKERGERYQDFESSDYANGKYFEFYTSQEFEPQFEKVRQLFEGL 548

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 549 DIPTSDDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 608

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 609 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 637

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 638 LVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 686


>gi|203288310|ref|YP_002223360.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           recurrentis A1]
 gi|201085530|gb|ACH95103.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia
           recurrentis A1]
          Length = 707

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 164/712 (23%), Positives = 304/712 (42%), Gaps = 69/712 (9%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++ L  +    ++     ++   P     Y+ +       ++   +  ++ +   
Sbjct: 35  FYRLEKD-LEALSVFLEEIKSKSLKFENPNKRMHYLIDNNLYEDFYQKYSEDQILEIYKA 93

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           ++ E      Y+     Y  Y L +  +  E  +   + V++ LA         A+    
Sbjct: 94  VEGEEFKFKSYMSASKFYKDYALKVKDTYFESYEDRIIAVSLFLA---DGCFDFALRLAL 150

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TPT  N+G     +L SCFL  V D L  I   +     L+K  GG+  +
Sbjct: 151 DMIKQRYQPATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALN 210

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G  I G    ++GVIP +K+  D     +Q G+RKGA   YL  +H D+E+FL
Sbjct: 211 LSNIRARGEEIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFL 270

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL--YGKEFEIA 521
           D +K   D++ R   ++    IPD F +   Q+  +   +P  V     L     +F+  
Sbjct: 271 DTKKINADEKSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFDKD 330

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y             + ++ISA  +  ++  + FE+G+P+I ++  CN+  P + VG V  
Sbjct: 331 Y----DLLASNPRIIKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKM 386

Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI    +                  C LGS+N++    +           +  A+
Sbjct: 387 SNLCTEIFQIQTPSVIGNYGEGDVIGYDVSCILGSLNIVNVINS------DFEFIVDLAM 440

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L +V+D    +     +K+N  +RA+GLG+M     L    IPY S EA++       
Sbjct: 441 RALTSVVDKSCINNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFM 500

Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRT 741
            ++F+++ +S+ +A+ER + +  FK S +  G +    +      R E+       +   
Sbjct: 501 LLNFYSLKSSMNIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIP 560

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S+  W+ LK  ++  G+ ++  +A+APT +I+ I   + S+ P  + +  +   +     
Sbjct: 561 SKSDWNNLKGDIQRYGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYY 620

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              +L  E            + +                      +A+ +D   LI+  S
Sbjct: 621 PMPYLSRE------------NAI-------------------FFKSAYYMDMRKLIDLVS 649

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             Q+ +DQ  S  LY+ +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 650 EAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 701


>gi|94988800|ref|YP_596901.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS9429]
 gi|94992685|ref|YP_600784.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS2096]
 gi|94542308|gb|ABF32357.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS9429]
 gi|94546193|gb|ABF36240.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS2096]
          Length = 719

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 159/715 (22%), Positives = 278/715 (38%), Gaps = 84/715 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV          +E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F        
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLC 382

Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745
             +  S  +A+ER   +  F+ S +  G +    +      + +L               
Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAED 557

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W  L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G       
Sbjct: 558 WKALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP-- 615

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                           +  D    + +A+++D   +I+  +   
Sbjct: 616 -----------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAAAT 646

Query: 865 KWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 647 EHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|300173990|ref|YP_003773156.1| ribonucleoside-diphosphate reductase subunit alpha [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888369|emb|CBL92337.1| ribonucleoside-diphosphate reductase, alpha subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 723

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 172/764 (22%), Positives = 291/764 (38%), Gaps = 118/764 (15%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+       +   L  + F    E     R   E      +  L   L+ +  
Sbjct: 35  EALDAFLKENVWPNVIQFDSL-ADRFEWLFENNFLERAFIEKYRLAFIEKLYTYLESQHF 93

Query: 291 FAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++     Y++Y L  N     +E       RVAM        +E+ A+   + +  
Sbjct: 94  NFKSFMAAFKFYNQYALKTNDGQQYVETYVD---RVAMNALYYADGREELALRLADEMIH 150

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + V
Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTVNSALQLSKMGGGVGINVSNV 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G +  + G++P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPVMGISNSAGGIVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    IPD F   V +N    LFSP +V     +YGK F       E 
Sbjct: 271 ENADEKIRVKTLSLGLTIPDKFYDLVRKNDVMYLFSPVDV---EKVYGKPFNYIDITSEY 327

Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  K+ +  + A  L  ++  +  E+G+P++   D  N  +P    G + SSNLC+
Sbjct: 328 DNMVNNDKITKYHVDARFLEEEISKLQQESGYPYVINIDVANRANPI--AGKIISSNLCS 385

Query: 587 EI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           EI               +       CNLGSIN++   A N         ++ T VR L  
Sbjct: 386 EILQVQTPSELDNGQQYTRLGSDVSCNLGSINIVNMMATNN-----FGESVDTMVRALTY 440

Query: 635 VIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D +    +    K N    AIGLG MG  +      + Y   E+++        ++++
Sbjct: 441 VSDTSNLDVVPSIAKGNTEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTTTFFMTLNYY 500

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR------DELAMNRTSRLPW 746
           +I AS+ +A+E    +  F+ S +  G +    +      R           N  ++  W
Sbjct: 501 SIKASMAIAKERNDTFFEFEKSTYADGSYFDKYLEEDWAPRTQKVAASFAQHNVPTKHDW 560

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
            ELK  V   GM N+   AIAPT +I+ +   + ++ P    +  +   M G        
Sbjct: 561 AELKADVAKYGMYNAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQEGMIGKVYYPAP- 619

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                    L +E M                        + +A++ID   +I+  +  Q+
Sbjct: 620 --------GLNNETM----------------------PYYVSAYDIDMRKVIDIYAAAQE 649

Query: 866 WIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            IDQ  +L L++                   + + L  +   A+  G+K+ YY+R+    
Sbjct: 650 HIDQGMALTLFMRSTLSSDLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT---- 705

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                T    +  +N                        ECE C
Sbjct: 706 ----FTDDNQESGVN------------------------ECESC 721


>gi|50365345|ref|YP_053770.1| ribonucleotide-diphosphate reductase subunit alpha [Mesoplasma
           florum L1]
 gi|50363901|gb|AAT75886.1| ribonucleoside-diphosphate reductase alpha chain [Mesoplasma florum
           L1]
          Length = 721

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 169/742 (22%), Positives = 295/742 (39%), Gaps = 79/742 (10%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             + +  +  ++R  I        + A     KL  +      K   +    +   +  E
Sbjct: 12  TDESDEYVTLNARAKI--------LAAGSDNFKLDVDAAKAYLKHHVEPRLVKFGSV-KE 62

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--S 312
                +  G     L        +  + +           ++G    Y+ Y L       
Sbjct: 63  RIEYLVSNGYYEEELINKYTIEQIEEITDIAYGFHREFPSFMGAMKFYNSYGLKTFDGQK 122

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
            +E  +    R  M          + A +    L    F  +TPT  N+G +   +  SC
Sbjct: 123 YLENFED---RAVMNALFLGNGNFESATKTLRQLMLGRFQPATPTFLNAGKKQRGEYVSC 179

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           +L  V D++  I  A+  +  L+K  GG+    T +R LGA I     ++ GVIP +K+ 
Sbjct: 180 YLLRVEDNMESICRAVTTSLQLSKRGGGVALCLTNLRELGAPIKQIANQATGVIPVMKIL 239

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G+R+GA   YL   H DV  FLD ++   D++ R   ++    IPD+  +
Sbjct: 240 EDSFSYANQLGQRQGAGAVYLNAHHPDVMSFLDTKRENADEKIRIKSLSLGLVIPDITFE 299

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550
              +N    LFSP +V      YGK         E Q       + +  I+A   +  + 
Sbjct: 300 LAQKNEEMALFSPYDVERE---YGKAMSDISITQEYQNLVKNPNIKKTYINARKFFLTVA 356

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETA 598
            + FE+G+P+I F D  N  +     G +  SNLC+EI   S            S  +  
Sbjct: 357 ELHFESGYPYILFDDTVNNNNAHAATGRIVMSNLCSEIAQVSTPSTFNDDLSFKSMGDDI 416

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+     +      + A  I  ++  LD V    +  +    ++ N  + A+G
Sbjct: 417 CCNLGSLNIAKVMESG----AEFAEVIEHSINALDLVSRTSDLSSAPSIQQGNKKNHAVG 472

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L    I Y S EAV+  +     ++++A  AS +LA + G +  F+ S + 
Sbjct: 473 LGAMNLHGFLATNFIWYNSIEAVDFTNMFFYAMAYNAFKASHKLALQYGTFDGFETSQFA 532

Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G           D        + E+  +  +   ++  W EL + +K  G+ NS+ MA+
Sbjct: 533 DGSWFNKYTKCAEDKWTPETQRVRELFAQYNVTIPTQKDWIELVELIKKDGIANSHLMAV 592

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + V+         V ++        ++  + M      
Sbjct: 593 APTGSISYLSSCTPSLQPVVAPIEVRKEGKLGRIYVPAY--------NINFDNM------ 638

Query: 827 HDGSIGNIERIPDDLKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                             +A  A+E+ PM +I+  +  Q+ +DQA SL L++ +  + + 
Sbjct: 639 ----------------AYYALGAYEVGPMPIIDIVAAAQQHVDQAISLTLFMTDQVTTRD 682

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           L+  Y  A+     + YY+R R
Sbjct: 683 LNKAYIHAFKKKCASIYYVRVR 704


>gi|57790964|ref|YP_182368.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1]
 gi|5918980|gb|AAD56211.1|AF168792_12 ribonucleotide reductase large subunit [Gallid herpesvirus 1]
          Length = 785

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 176/737 (23%), Positives = 280/737 (37%), Gaps = 100/737 (13%)

Query: 269 LHESMMDFDLVYLANDLKYERDF------AFEYLGLQILYDR---YFLHINGSRIEMPQA 319
           L      F L    +     +DF          +GLQ        Y   +   ++E    
Sbjct: 98  LSADCKQFILENAEHISAVVKDFYNGTYHQLARVGLQSAQKYESLYLGKLGNGKLESMGQ 157

Query: 320 FFMRVAMGLALKETE---------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           FF R++   A                           F+  LSS   +  TP +   GT 
Sbjct: 158 FFTRLSAEAARGAFNIPQFAQALEVDGQVTPADVFTRFFTCLSSQLIVPPTPVMLFGGTS 217

Query: 365 HPQLSSCFLTTV--PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
               +SCFL      +         +E   +    GG+G     +               
Sbjct: 218 LAAYASCFLIDSSGRNTERRSMSLPEEVIPIMNNRGGIGISLPCLGAPQN--------ES 269

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNT 481
           G + FLK  +    A N   KR   +C Y E WH D  + L +R ++  ++  R  ++ T
Sbjct: 270 GCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFT 329

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           A W+PDLFMKR+ Q              L +L+G+EFE  YE  ER+     + +  ++ 
Sbjct: 330 AIWMPDLFMKRLQQPGSKWTLFDHRGEHLSNLFGEEFEKEYERLERKMLEWPLSLSPRLC 389

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           +             TG P++ FKD  N           +  SNLCTEI   + S+   VC
Sbjct: 390 SDNQKCS------STGTPFVVFKDAFNRHYFYNMQHRALKCSNLCTEIAHMADSDTVGVC 443

Query: 601 NLGSINLLAHFAN----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           NL SINL A   N          + FDY+ L  T RTA    + +I +     ++A+  N
Sbjct: 444 NLISINLAAMVKNARAGLAGKPGSFFDYELLRETARTATIFANVMISLGNMPSQRAQSGN 503

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
           H  R++G+G+ G  +A  +      S E  E  D   E ++      S  L +     + 
Sbjct: 504 HRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFNDTVFELLALETTGISCRLCELGLPPFD 563

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            ++ S +  G   ID                  +  WD L+ R+   G+ N   +A+ PT
Sbjct: 564 KYRESYYALGWLHIDGWPNTKLR---------YKNEWDSLRHRIDPSGLYNCQTVALMPT 614

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKY 826
           A+ + I  VS+   P + N++ K + +G+    +  L++ + +           +++LK 
Sbjct: 615 ASSSQITEVSEGFQPVFGNMFSKISTTGEEVRPHLALMDAIDELYSDQGEKQAFLANLKK 674

Query: 827 HDGSIG---NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--- 880
           H  S+            +     TAFE+D   L+  ++RR  +ID +QS  LY+ E    
Sbjct: 675 HQWSVRAALGSAWSESHVLAKFQTAFELDQEKLLYLSARRAPFIDHSQSNTLYITEDVDG 734

Query: 881 --SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
             S  ++  + + A+  GLKT  YY + R  T+             N V V         
Sbjct: 735 TLSASRVSRLLQVAFKYGLKTAMYYCKVRKITN-------------NGVFVG-------- 773

Query: 938 LGIPSSCTSDTECEVCQ 954
                SC     C  CQ
Sbjct: 774 -----SCGDSLICSACQ 785


>gi|71903781|ref|YP_280584.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes MGAS6180]
 gi|71802876|gb|AAX72229.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           pyogenes MGAS6180]
          Length = 719

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 160/720 (22%), Positives = 277/720 (38%), Gaps = 88/720 (12%)

Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      E     I          +      +  L + +K
Sbjct: 28  LHKDKEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEFITELDSIIK 87

Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            E      ++     Y +Y L  N     +E  +    RV          +E  A +   
Sbjct: 88  SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F     
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                      K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  S
Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379

Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
           NLC+EI    +                  CNLGS N+L    +          +I+T  R
Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     
Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494

Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740
           +++  +  S  +A+ER   +  F+ S +  G +    +         L+  +  +  + +
Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQ 554

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799
            S   W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G  
Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                                                +  D    + +A+++D   +I+ 
Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641

Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            +   + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|70727161|ref|YP_254077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447887|dbj|BAE05471.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           haemolyticus JCSC1435]
          Length = 701

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 162/709 (22%), Positives = 289/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +      LE++  + +     + ++  +      Y   F +Y EE +         ++F
Sbjct: 32  DQEALAVYLEEIHDKTI-YFDSEIERLHYLVDNNFYFNVFDKYSEEDLVEITEFAKSINF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +     +  K+ +D+A +        + Y  H               VA+         +
Sbjct: 91  EFASYMSASKFYKDYALKTNDKSQYLEDYNQH---------------VAIVALYLADGNK 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++A +F   +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 QQAKQFILAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +     V +K  A  +   +     ++G+P++ FKD  N     
Sbjct: 316 DDIDLEKYYDDMVANPNI----VKKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++G +  SNLCTEI         N    E  +    S NL +    N  +  K+  ++ 
Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMETGKIKDSVH 431

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       +K+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 432 TGMDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANT 491

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AM 738
               +++++I  S+E+A+ER   Y  F+ S +  G +         E + E        +
Sbjct: 492 FFMMMNYYSIERSMEIAKERGEVYQDFEQSDYASGKYFEFYTSQEFEPKFEKVKRLFDHI 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 552 DIPTAKDWKALQEQVQQHGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 641 LIATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|258508469|ref|YP_003171220.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus GG]
 gi|257148396|emb|CAR87369.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           rhamnosus GG]
 gi|259649781|dbj|BAI41943.1| ribonucleotide reductase alpha subunit [Lactobacillus rhamnosus GG]
          Length = 723

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 156/711 (21%), Positives = 286/711 (40%), Gaps = 74/711 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL--KY 287
           +E L     +       +   L  E     +E         +      L  L   L  ++
Sbjct: 34  KEALQAFLTENVAPNTMKFASL-QERLKYLVEHHYYEADFLKKYQPAFLEKLNQFLTAQH 92

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            +  +F                    +E  +    RV           E  AV+  + + 
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDGTQYLEDYKD---RVFANALFFADGNEDLAVDLADEMI 149

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G     +L SCFL  + DD+  I  A+     L++  GG+G   + 
Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 210 LREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD + + +  NA   LFSP  V   +      +    + Y+
Sbjct: 270 KENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGK-PFSYVDITKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +     +IK ++ I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 329 KMVANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI          + +E  V     S NL +    N         ++   VR L  V D  
Sbjct: 386 EIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGHSVEAMVRALTYVTDHS 445

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS
Sbjct: 446 NIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTLKAS 505

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751
            ++A+ER  ++ +F+ S +  G +              +VRD    ++  ++  W  LK+
Sbjct: 506 NKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQALKE 565

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N MA+AP  +I+ I   S S+ P    +  +     G             
Sbjct: 566 DVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAP------ 619

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               L ++ M                        + +A++ID   +I+  +  Q+ +DQ 
Sbjct: 620 ---GLSNDTM----------------------PYYQSAYDIDMRKVIDVYAAAQQHVDQG 654

Query: 871 QSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            ++ L++                ++ + + L+ +   A   G+K+ YY+R+
Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTNKMTTRDLNILRNYAHYKGIKSIYYIRT 705


>gi|139473585|ref|YP_001128301.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           pyogenes str. Manfredo]
 gi|134271832|emb|CAM30067.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus pyogenes str. Manfredo]
          Length = 719

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 160/717 (22%), Positives = 282/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + +++  + +   +F +  LA  +K E 
Sbjct: 32  KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV          +E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  F        
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324

Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                   K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382

Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI    +                  CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +         L+  +  +  + + S 
Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVAKSDLVKSLFKDHFIPQAS- 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W  L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 557 -DWKALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             +  D    + +A+++D   +I+  + 
Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|317495972|ref|ZP_07954334.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424]
 gi|316913876|gb|EFV35360.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424]
          Length = 696

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 172/691 (24%), Positives = 285/691 (41%), Gaps = 69/691 (9%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
               + ++  +   +  Y   F +YIE+ +   L       F+        K+ +D+A +
Sbjct: 44  KFSSEMKRLRYLVEENFYYNIFDKYIEDEIVECLELAKNFKFEFKSYMAASKFYKDYALK 103

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
                    +Y  + N       Q  F+ VAM L          A E    +       +
Sbjct: 104 TN----DKKQYLENFN-------QHVFI-VAMYLG---DGNTALAKELMISMLEQRLQPA 148

Query: 355 TPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           TPT  NS  +R  +L SCFL  V D L  I         L+K  GG+  + + +R  G  
Sbjct: 149 TPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGES 208

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G  G ++GVIP  K         +Q G+R GA   YL  +H DV EFLD +K   D+ 
Sbjct: 209 IKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEE 268

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R   ++T   +P LF     +N  + +F P  + + + L   + +IA    E  A+   
Sbjct: 269 LRLPTISTGIIVPSLFFDLARENKEFYMFGPHSIYEEYGLVLDDIDIAEYYDEFVANENI 328

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS- 592
           IK  RK  A  +   +     ++G+P++ FKD  N     + +G V  SNLCTEI     
Sbjct: 329 IK--RKFDARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEIFQLQE 386

Query: 593 ------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
                   E   +    S NL +    N  +  KL  +I + +  L  V D         
Sbjct: 387 TSVIKDYGESDVIKRDISCNLASLNIVNVMESKKLKESIYSGMDALTFVSDSTKIKNAPG 446

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K+N    ++GLG M     L    I Y S EA + A+     ++++ I  S+++A+ER
Sbjct: 447 VVKANEEFHSVGLGAMNLNGYLAKNLIAYDSEEAKDFANVFFMMMNYYTIERSMQIAKER 506

Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
              +  F+ S +  G +    I          + E+ + + +   ++  W  LK RVK  
Sbjct: 507 KETFKDFEKSDYYNGAYFTKYITNDYLPKSDKVKELFEGIYIP--TKEDWHSLKNRVKEN 564

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+ ++  MAIAPT +I+ +   + S+ P    +  +S  + +      +L          
Sbjct: 565 GLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPYL---------- 614

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                    +  + +AF +D M LI+  +  Q+ IDQ  S+ LY
Sbjct: 615 ---------------------SPKTQWYYKSAFTMDQMKLIDLMAVIQEHIDQGISVILY 653

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++ + + ++L   Y  A   GLK+ YY R++
Sbjct: 654 VNSDITTRELARYYIYAHHKGLKSLYYTRNK 684


>gi|328957626|ref|YP_004375012.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328673950|gb|AEB29996.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 725

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 164/691 (23%), Positives = 284/691 (41%), Gaps = 79/691 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311
            E     IEE               +  L +D+ Y R F F  ++     Y +Y L  N 
Sbjct: 58  DEKLNYLIEEDYIEEEFLLKYDRAFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTND 116

Query: 312 --SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQL 368
               +E  +    R+            + A    + + +  +  +TPT  N+   R  +L
Sbjct: 117 GERFLERYED---RIVFNALYLADGDTELASRLADEIVNQRYQPATPTFLNAGRKRRGEL 173

Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
            SCFL    DD+  I   +     L++  GG+G + + +R  G  I   +  S GV+P +
Sbjct: 174 VSCFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVM 233

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           K+  D+    NQ G+R GA   YL  +H D+  FL  +K   D++ R   ++    +PD 
Sbjct: 234 KLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDK 293

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           F +    +    LFSP +V  ++      +    + Y+   +  EI+  + ISA  L  +
Sbjct: 294 FYELAAHDEQMYLFSPYDVERIYGE-PFAYIDITKEYDNMVNNEEIRKSK-ISARELENE 351

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCN 601
           +  +  E+G+P+I   D  N  +P    G +  SNLC+EI         N+      +  
Sbjct: 352 ISKLQQESGYPYIINVDTANRENPVY--GTITMSNLCSEILQVQEPSLINNDQTYEHLGT 409

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +    N        ++I T VR L  V D  +   +   K  N  +  IGLG 
Sbjct: 410 DISCNLGSTNIVNLMKSSDFGNSIDTMVRALTMVTDQSSIDAVPSIKNGNDKYHTIGLGA 469

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719
           MG  + L L  I Y SPE+VE  D   + ++++ + +S ++A+ER   + +F+ S +  G
Sbjct: 470 MGLHTYLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERNTTFYNFEKSSYANG 529

Query: 720 VFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +    I          +  + D + +       W  LK+ V   G+ + N +A+APT +
Sbjct: 530 TYFDKYINENFVFSSEKVQHLFDGIQVPTI--EDWAALKEAVMRDGLYHQNRLAVAPTGS 587

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ +   S S+ P  + +  +    +G       FL N+                     
Sbjct: 588 ISYVNETSSSLHPITRLIEERQEKKTGKTYYPAPFLSND--------------------- 626

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL------------- 877
                         + +A+++D   +I+  +  QK IDQ  SL L+L             
Sbjct: 627 ----------TMPYYTSAYDMDMRKVIDVYAAAQKHIDQGMSLTLFLRSEIPEGLYEWKN 676

Query: 878 ---DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
               + + + L+ +   AW  G+K+ YY+R+
Sbjct: 677 GRTTKQTTRDLNILRHYAWKKGVKSIYYVRT 707


>gi|326692190|ref|ZP_08229195.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           argentinum KCTC 3773]
          Length = 723

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 169/763 (22%), Positives = 292/763 (38%), Gaps = 116/763 (15%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L     +       +   L  E F    E     R   E      +  L   L+ E  
Sbjct: 35  EALDAFLTENVWPNVLKFDSL-SERFEWLFEHNFLERAFIEQYRLAFIEELYAYLEGENF 93

Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++     Y++Y L  N     +E       RVAM         E  A+   + +  
Sbjct: 94  HFKSFMAAFKFYNQYALKTNDGQYYVETYID---RVAMNALYYAAGNEALALRLADEMIH 150

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNL 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPVMGIANSAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F + V +N    LFSP +V  ++ +     +I  E    
Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYELVRKNEDMYLFSPADVEKVYGVPFNYVDITAEYDNM 330

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
            A+    K   +++A  L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+E
Sbjct: 331 VANDQITKY--RLNARTLEEEISKLQQESGYPYILNVDVTNRANPI--AGKIVSSNLCSE 386

Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I               +       CNLGSIN++   A          +++ T VR L  V
Sbjct: 387 ILQVQTPSELDNGQQYTRLGSDVSCNLGSINIVNMMATP-----DFETSVDTMVRALTFV 441

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +    K N    AIGLG MG  +      + Y    +++        +++++
Sbjct: 442 SDTSNLDVVPSIAKGNQEKHAIGLGAMGLAAYFAQNQMYYGDEASLDFTSTFFMTLNYYS 501

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPWD 747
           I AS++LA+E +  +  F  S +  G +       D      +V D     +  ++  W 
Sbjct: 502 IKASMKLAKERQEKFFEFDKSTYADGSYFDKYLTQDWTPKTPQVADAFANHHVPTQRDWL 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806
           ELK+ V   GM ++   AIAPT +I+ +   + ++ P    +  +   M G         
Sbjct: 562 ELKENVMKYGMYHAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQEGMIGKVYYPAP-- 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                   L +E M                        + +A++ D   +I+  +  Q+ 
Sbjct: 620 -------GLNNETM----------------------PYYVSAYDTDMRKVIDVYAAAQEH 650

Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           IDQ  +L L++                   + + L  +   A+  G+K+ YY+R+     
Sbjct: 651 IDQGMALTLFMRSTLSTALYEWKKGRTEKMTTRDLTILRHYAFNKGIKSLYYVRT----- 705

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               T    +  +N                        ECE C
Sbjct: 706 ---FTDDNQESGVN------------------------ECESC 721


>gi|42561372|ref|NP_975823.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|42492870|emb|CAE77465.1| ribonucleoside-diphosphate reductase alpha subunit [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
          Length = 723

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 165/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%)

Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           +  +  ++R+ I    +         A   L+         +  + +K +  + +  Y  
Sbjct: 18  DEYIKLNARSKIFLKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 68

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                +E       +        +  L +           ++G    ++ Y L    + +
Sbjct: 69  ----LLENQYYDSEILNKYSFDQISQLNHYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 124

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
            +      RV M           +A +    +    F  +TPT  N+  +H  +  SC+L
Sbjct: 125 YLETYT-DRVLMNALFLGNGNFNKAKDLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 183

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D++  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D
Sbjct: 184 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 243

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    +Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +  
Sbjct: 244 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 303

Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             N    LFSP +V   +          E  YE  E       IK    ISA   +  + 
Sbjct: 304 RDNKDMALFSPYDVQKTYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 358

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I F+D  N R+     G +  SNLC+EI   S++ E              
Sbjct: 359 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYNSDLSFIKTGEDI 418

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+     +      + + +I  A+  LD V  + +       +K N  + A+G
Sbjct: 419 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSASPSIQKGNALNHAVG 474

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L +  I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S + 
Sbjct: 475 LGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFA 534

Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G           D        + E+  +  +   S+  W +L + +K  G+ NS+ MA+
Sbjct: 535 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAV 594

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           AP+ +I+ +   + S+ P    + V+         V ++ +N                 Y
Sbjct: 595 APSGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 643

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
             G                  A+E+ P  +I   +  Q+ +DQA SL L++ +  + + L
Sbjct: 644 AMG------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 685

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +  Y  A+  G  + YY+R
Sbjct: 686 NKAYVNAFKQGCSSIYYVR 704


>gi|229552272|ref|ZP_04440997.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539682|ref|YP_003174181.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus Lc 705]
 gi|229314344|gb|EEN80317.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151358|emb|CAR90330.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 723

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 156/711 (21%), Positives = 284/711 (39%), Gaps = 74/711 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL--KY 287
           +E L     +       +   L  E     +E         +      L  L   L  ++
Sbjct: 34  KEALQAFLTENVAPNTMKFASL-QERLKYLVEHHYYEADFLKKYQPAFLEKLNQFLTAQH 92

Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
            +  +F                    +E  +    RV           E  AV+  + + 
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDGTQYLEDYKD---RVFANALFFADGNEDLAVDLADEMI 149

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+G     +L SCFL  + DD+  I  A+     L++  GG+G   + 
Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +
Sbjct: 210 LREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD + + +  NA   LFSP  V   +      +    + Y+
Sbjct: 270 KENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGK-PFSYVDITKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +     +IK ++ I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 329 KMVANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGRIIMSNLCS 385

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI          + +E  V     S NL +    N         ++   VR L  V D  
Sbjct: 386 EIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGHSVEAMVRALTYVTDHS 445

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS
Sbjct: 446 NIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTLKAS 505

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751
            ++A+ER  ++ +F+ S +  G +              +VRD    ++  ++  W  LK+
Sbjct: 506 NKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQALKE 565

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N MA+AP  +I+ I   S S+ P    +  +     G             
Sbjct: 566 DVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAP------ 619

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
               L ++ M                        + +A++ID   +I+  +  Q+ +DQ 
Sbjct: 620 ---GLSNDTM----------------------PYYQSAYDIDMRKVIDVYAAAQQHVDQG 654

Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            ++ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSIYYIRT 705


>gi|10834910|ref|NP_066871.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 3]
 gi|5102911|dbj|BAA78728.1| UL39 protein [Marek's disease virus serotype 2 MDV2]
 gi|5689311|dbj|BAA82935.1| UL39 product homolog [Marek's disease virus serotype 2 MDV2]
 gi|10800004|dbj|BAB16549.1| UL39 protein [Gallid herpesvirus 3]
          Length = 797

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 163/684 (23%), Positives = 277/684 (40%), Gaps = 78/684 (11%)

Query: 286 KYERDFAFEYLGLQIL-------YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338
              R +   Y  L+ L       Y+ Y   +   + E    FF+R+A   A + + K+  
Sbjct: 134 DMLRFYGVTYPWLKRLGLQSALKYEEYLTELEDGKKESLCQFFVRLAAAAATEASNKKAF 193

Query: 339 AVEF--------------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYG 382
                             +  L+   F+ STP +   G      +SC+L      +    
Sbjct: 194 MSALGTEVSTWETAFTAFFFALARQIFVPSTPCMLFLGREGTSTASCYLMDPRTINTHDT 253

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           +     +        GG+G     +               G++P +KV +   +A N G 
Sbjct: 254 LKAIADDIVPHLLARGGIGISLQHLNQKT-----------GLMPVMKVLDSLVMAANAGE 302

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR-RRTHDMNTANWIPDLFMKRVT------Q 495
           +R   VC YLE WH D+   L++R     +  RR  ++  A W  DL  KR        +
Sbjct: 303 RRPTGVCVYLEPWHADIMSALNMRGMMATEESRRCDNVFIALWTCDLLFKRYERHANGEK 362

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  WTLF     S L  L+G EFE  Y   E      E      +    L   ++     
Sbjct: 363 NVTWTLFD-SRASILATLHGSEFEKEYNRLEA-----EGLGVASLPVRDLMFAIIKSAAS 416

Query: 556 TGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
           TG P+I FKD CN        G  +  SNLCTEI   +      VC+L S+NL     + 
Sbjct: 417 TGSPFILFKDACNKHYITDTQGDAIAGSNLCTEIIQKTDGNTNGVCSLVSVNLARCVFDE 476

Query: 615 Q----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                FD+  L   +R A   +++++  +     K++     HR++G+G+ G  +AL  +
Sbjct: 477 NGEKKFDFSALRRAVRLATVFVNSIMSSSDVPTAKSRSGKDRHRSMGIGVQGLHTALLSM 536

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLL 729
            +  +      +  +  E +   A++ S E  +     ++ F  S + +G    D     
Sbjct: 537 GLDLSDERVKPLNKQIFELMLLEAMTVSCEFCEGGLPAFADFSNSYYSRGRLHFDGW--- 593

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                   +  +    W+ L++R++  G+ N+  +A+ PTA  A +  VS+S  P + N+
Sbjct: 594 ------ANVGLSMPEEWNALRERIQASGLYNAQFVALMPTAASAQVTEVSESFLPVFSNM 647

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--------DGSIGNIERIPDDL 841
           + K   +G+    N+ L+ EL++    +E                 + ++GN       L
Sbjct: 648 FNKVTTAGELLRPNNQLMGELREIYADNEDRRLKAIAALECANWCVETALGNKPECSQLL 707

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMG 896
           K  + TAFE D   LI+  + R  ++DQ+QS+ L++ E +   L       +  +A+  G
Sbjct: 708 K--YKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTEAADGTLLASHVMNLLLRAYKAG 765

Query: 897 LKT-TYYLRSRSATSVEKSTLKGV 919
           LKT  YY + R AT+    +  G 
Sbjct: 766 LKTGMYYCKIRKATNAGVFSGNGE 789


>gi|251810164|ref|ZP_04824637.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|293368192|ref|ZP_06614821.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|251806216|gb|EES58873.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|291317615|gb|EFE58032.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 698

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 163/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + + +   + ++  +      Y   F +Y E  +     +   + F
Sbjct: 29  DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELIEITEYAKSIHF 87

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 88  QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 132

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 313 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 368

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ 
Sbjct: 369 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 428

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 429 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 488

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER   Y  F+ S +  G +       +      +VR     +
Sbjct: 489 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 548

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 549 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 608

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 609 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 637

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 638 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686


>gi|256384255|gb|ACU78825.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256385088|gb|ACU79657.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455870|gb|ADH22105.1| ribonucleoside-diphosphate reductase, alpha subunit [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 720

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 165/739 (22%), Positives = 295/739 (39%), Gaps = 85/739 (11%)

Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           +  +  ++R+ I    +         A   L+         +  + +K +  + +  Y  
Sbjct: 15  DEYIKLNARSKIFSKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 65

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
                +E       +        +  L +           ++G    ++ Y L    + +
Sbjct: 66  ----LLENKYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 121

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373
            +      RV M           +A      +    F  +TPT  N+  +H  +  SC+L
Sbjct: 122 YLETYT-DRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 180

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D++  I   +  +  L+K  GG+    T +R  G+ I   +G S G IP +K+  D
Sbjct: 181 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 240

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
           +    +Q G+R+GA   Y+   H D+   LD ++   D++ R   ++    IPD+  +  
Sbjct: 241 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 300

Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             N    LFSP +V  +++         E  YE  E       IK    ISA   +  + 
Sbjct: 301 RDNKDMALFSPYDVQKVYNKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 355

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598
            + FE+G+P+I F+D  N R+     G +  SNLC+EI   S++ E              
Sbjct: 356 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFVKTGEDI 415

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657
            CNLGS+N+     +      + + +I  A+  LD V  + +       +K N  + A+G
Sbjct: 416 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVG 471

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG M     L    I Y SPEAV+  +     ++++A  AS +LAQE   ++SF  S + 
Sbjct: 472 LGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFA 531

Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            G           D        + E+  +  +   S+  W +L + +K  G+ NS+ MA+
Sbjct: 532 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIQLVEEIKKTGLANSHLMAV 591

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +I+ +   + S+ P    + V+         V ++ +N                 Y
Sbjct: 592 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 640

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885
             G                  A+E+    +I   +  Q+ +DQA SL L++ +  + + L
Sbjct: 641 AMG------------------AYELGADPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 682

Query: 886 DFIYRQAWLMGLKTTYYLR 904
           +  Y  A+  G  + YY+R
Sbjct: 683 NRAYVNAFKQGCSSIYYVR 701


>gi|22536603|ref|NP_687454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae 2603V/R]
 gi|76798640|ref|ZP_00780866.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|77407709|ref|ZP_00784464.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
 gi|22533440|gb|AAM99326.1|AE014211_3 ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 2603V/R]
 gi|76586005|gb|EAO62537.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|77173708|gb|EAO76822.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
          Length = 721

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 169/724 (23%), Positives = 302/724 (41%), Gaps = 80/724 (11%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
           E     +        L +      +  +      ++     ++G    Y+ Y L    +R
Sbjct: 52  EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFAFLNFMGALKFYNAYALKTEDNR 111

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372
             + + +  RV M         EK A +  + + +  F  +TPT  N+G +   +  SC+
Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  I  A+  +  L+K  GG+    T +R  GA I G   ++ G++P +K+  
Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
           D+    NQ G+R+GA   YL   H +V  FLD ++   D++ R   ++    IPD+  + 
Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551
              N    LFSP    D+  +YGK         E +       + +  ISA  L++ +  
Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599
           + FE+G+P+I F+D  N ++P +  G +  SNLC+EI               +       
Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTASQFSEDLTFTKVGHDVC 407

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSIN+         D++KL +    A+  +    D++  +    KK N  + A+GLG
Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKGNAANHAVGLG 464

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
            M     L   HI Y S EA++  D     ++++A  AS  LA+E+G +  F  S +  G
Sbjct: 465 AMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524

Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +         E +         E  +   S+  W +L + +K IG+ N++ +A+APT +
Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           I+ +   + S+ P    + V+   +     V ++                          
Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618

Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
               +I  D    +   A+E+    +I  A+  QK IDQA SL L++ +  + + L+  Y
Sbjct: 619 ----KIDADNYVYYKKGAYEVGSEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAY 674

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            QA+     + YY+R R                     + + + S   +    + +   +
Sbjct: 675 IQAFKQKCASIYYVRVR-------------------QDILEGSESYDDMLDDFTSSDLED 715

Query: 950 CEVC 953
           C+ C
Sbjct: 716 CQSC 719


>gi|290580849|ref|YP_003485241.1| ribonucleotide reductase large subunit [Streptococcus mutans
           NN2025]
 gi|254997748|dbj|BAH88349.1| ribonucleotide reductase large subunit [Streptococcus mutans
           NN2025]
          Length = 719

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 164/760 (21%), Positives = 294/760 (38%), Gaps = 110/760 (14%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  K        +  +       + ++A  + +   +F +  L+ DL    
Sbjct: 32  KEALEAFFKENVKPNTKTFDSITDKIQFLVANDYIEAEFIAKYKSEF-IEQLSQDLHAY- 89

Query: 290 DFAF-EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           DF F  ++     + +Y L  N     +E  +    RV           E  A +    +
Sbjct: 90  DFQFKSFMAAYKFHQQYALKTNDGEEYLESIED---RVLFNALYFADGNENLAHDLAMEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD F +   +N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITIPDKFYELARRNEDMYLFSPYSIEREYGV-PYNYLDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +      +I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPKIIKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPI--DGKIIMSNLC 382

Query: 586 TEITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI           ++E        S NL +    N         +I+   R L  V D 
Sbjct: 383 SEILQVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVTDS 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  
Sbjct: 443 SHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLVE 502

Query: 698 SVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+E +  +  F+ S +  G +    +          + E+     + +     W+ 
Sbjct: 503 SNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKVKELFKNHFIPQA--EDWEA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L++ V   G+ + N +A+AP  +I+ I  VS SI P  + +  +     G          
Sbjct: 561 LRQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHPITRRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATQHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           DQ  SL L++               + + + L  +   A+  G+K+ YY+R+        
Sbjct: 650 DQGMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT-------- 701

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T  G +   N                        ECE C
Sbjct: 702 FTDDGDEVGAN------------------------ECESC 717


>gi|27467431|ref|NP_764068.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866331|ref|YP_187990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis RP62A]
 gi|282875688|ref|ZP_06284559.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis SK135]
 gi|27314974|gb|AAO04110.1|AE016745_209 ribonuceloside diphosphate reductase major subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636989|gb|AAW53777.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|281295715|gb|EFA88238.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis SK135]
 gi|329723344|gb|EGG59874.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU144]
 gi|329737947|gb|EGG74171.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU045]
          Length = 701

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 163/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + + +   + ++  +      Y   F +Y E  +     +   + F
Sbjct: 32  DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELIEITEYAKSIHF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 91  QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ 
Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 431

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER   Y  F+ S +  G +       +      +VR     +
Sbjct: 492 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 552 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 641 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|312864803|ref|ZP_07725034.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
 gi|311099930|gb|EFQ58143.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           downei F0415]
          Length = 719

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 162/717 (22%), Positives = 281/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE                +  LA DL  E 
Sbjct: 32  KEALEAFFKENVLPNSMVFDSI-SQKINYLIENDYIEAEFIGKYKSEFIESLAKDL-QEA 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           DF F  ++     Y +Y L  N     +E  +    RV           E  A +    +
Sbjct: 90  DFHFQSFMAAYKFYQQYALKTNDGTAYLESIED---RVLFNALYFADGNEVLAQDLAREM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILSFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y
Sbjct: 267 KKENADEKIRVKTLSLGVTVPDKFYELARKNEDMYLFSPYTVEKEYGV-PYNYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + ISA  L  ++  +  E+G+P++   D  N        G +  SNLC
Sbjct: 326 DELVANPNITKTK-ISARELETEISKLQQESGYPYVVNVDTANR--SNPIDGKIVMSNLC 382

Query: 586 TEITLNS------------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N++   A+          +I+   R L 
Sbjct: 383 SEILQVQKPSLINDAQEFVQMGTDISCNLGSTNIVNMMASP-----DFGRSIKAMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   H+ Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSFLARHHMEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER  ++  F+ S +  G +    +          + E+  +  + +   
Sbjct: 498 WTLVESNAIARERGQSFVGFEKSKYADGTYFDKYVTGQFQPKSAKVKELFAKHFIPQAG- 556

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L++ V   G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G     
Sbjct: 557 -DWEALRQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHPIIQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                                             +  D    + +A+++D   +I+  + 
Sbjct: 616 -------------------------------ASGLSTDTIPYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  S+ L++                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSMTLFMRSELPQELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701


>gi|222150733|ref|YP_002559886.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119855|dbj|BAH17190.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 701

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 156/668 (23%), Positives = 276/668 (41%), Gaps = 58/668 (8%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGS--RIE 315
           +  V+    ++   +++   L + +KY +D  F    Y+     +  Y L  N     +E
Sbjct: 58  KYLVEQDFYYDLFNEYNETDLNDIIKYAQDIEFNFASYMSASKFFKDYALKTNDKQQYLE 117

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +   + V++ LA        +A +  + +    +  +TPT  N+G     +L SCFL 
Sbjct: 118 DYKEHVIIVSLYLA---KGDVNKAKQLISAMIEQRYQPATPTFLNAGRARRGELVSCFLL 174

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D L  I         L+K  GG+  + + +R  G  I G  G ++GV+P  K     
Sbjct: 175 EVDDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGG 234

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               +Q G+R GA   YL  +H DV EFLD +K   D+  R   ++T   +P  F     
Sbjct: 235 FSYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAK 294

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +   + +F+P  V   + L   +  I     E  A+   +K  +   A  +   +     
Sbjct: 295 EGKDFFMFAPHTVEREYGLTLDDLNIDEMYDELVANPNIMKKSK--DAREMLNLIAQTQL 352

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINL 607
           ++G+P++ FKD  N      ++G +  SNLCTEI         N    E  +    S NL
Sbjct: 353 QSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNL 412

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            +    N  +  K   ++ T +  L  V D  +        K+N    ++GLG+M     
Sbjct: 413 GSLNIVNVMESKKFKDSVHTGMDALTTVSDEADIKNAPGVAKANRELHSVGLGVMNLHGY 472

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDS 725
           L    I Y S EA E A      ++F+++  S+E+A E    ++ F+ S +  G +    
Sbjct: 473 LAKNQIGYESEEAKEFAATFFMMLNFYSLQRSMEIAMERNETFADFEKSDYASGKYFDKY 532

Query: 726 IGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
           +      + +        ++  S   W +LK +V   G+ ++  +AIAPT +I+ +   +
Sbjct: 533 VATDFRPKSDKVTALFEGIDMPSPEDWADLKDKVMKNGLFHAYRLAIAPTQSISYVQNAT 592

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            S+ P    +  ++  + +      FL                                 
Sbjct: 593 SSVMPIVDQIERRTYGNAETFYPMPFL-------------------------------SP 621

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           +    + +AF  D M LI+  +  Q+ IDQ  S  L+++ + S ++L  +Y  A   GLK
Sbjct: 622 ETMWFYKSAFNTDQMKLIDLIATIQEHIDQGISTILFVNSDISTRELARLYVYAHHKGLK 681

Query: 899 TTYYLRSR 906
           + YY R++
Sbjct: 682 SLYYTRNK 689


>gi|329767979|ref|ZP_08259490.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
 gi|328838464|gb|EGF88072.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
          Length = 696

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 169/702 (24%), Positives = 288/702 (41%), Gaps = 58/702 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             KL ++V        +            +     +EE     +  + + D  L  L   
Sbjct: 21  FFKLEKDVEAIEEFLREVDFRTVKFSSEMKRLRYLVEENFYYNIFDKYIEDEILECLELA 80

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEM---PQAFFMRVAMGLALKETEKEKRAVE 341
             ++ +F   Y+     Y  Y L  N  +  +    Q  F+ VAM LA         A E
Sbjct: 81  ANFKFEFK-SYMAASKFYKDYALKTNDKKQYLENFNQHVFI-VAMYLA---DGDVALAKE 135

Query: 342 FYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               +       +TPT  NS  +R  +L SCFL  V D L  I         L+K  GG+
Sbjct: 136 LMISMLEQRLQPATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGV 195

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G  G ++GVIP  K         +Q G+R GA   YL  +H DV 
Sbjct: 196 AINLSKLRARGESIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVL 255

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D+  R   ++T   +P LF     +N  + +F P  + + + L   + +I
Sbjct: 256 EFLDTKKVNADEELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDI 315

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           A    E  A+   +K  RK  A  +   +     ++G+P++ FKD  N     + +G V 
Sbjct: 316 AKYYDEFVANENIMK--RKFDARDMLNLIAQTQLQSGYPYLMFKDNANKDHALREIGQVK 373

Query: 581 SSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            SNLCTEI             E+  +    S NL +    N  +  K+  +I + +  L 
Sbjct: 374 MSNLCTEIFQLQETSIIKDYGEDDIIKRDISCNLASLNIVNVMESKKIKESIYSGMDALT 433

Query: 634 -NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                          K+N    ++GLG M     L    I Y S EA + A+     +++
Sbjct: 434 FVSNSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNY 493

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLP 745
           + +  S+++A++R   +  F+ S +  G +       D + +  +V++    ++  +R  
Sbjct: 494 YTLERSMQIAKKRNETFKDFEKSDYYNGRYFTKYIENDYLPVTDKVKELFEGIHIPTRED 553

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK RVK  G+ ++  MAIAPT +I+ +   + S+ P    +  +S  + +      +
Sbjct: 554 WRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPY 613

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L                                   +  + +AF ID M LI+  +  Q+
Sbjct: 614 L-------------------------------SPKTQWFYKSAFTIDQMKLIDLMAVIQE 642

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +DQ  S+ L+++ + + ++L   Y  A   GLK+ YY R++
Sbjct: 643 HVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK 684


>gi|237798941|ref|ZP_04587402.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021795|gb|EGI01852.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 226

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 4/221 (1%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           S         A   L+   P +   ++VIKRNG V  +   KI+ AI KAF+AVEG  A+
Sbjct: 10  SPTGAPQASQAPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            S R+ D +  LTEQ      +   S   +HIE+IQDQVE +LM++G  K+ R+YV+YR+
Sbjct: 67  ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
            R+  RA ++         P ++I + DG+    +  RL  IV EAC GL +V + ++ +
Sbjct: 127 SRAKERAVRAP-DEQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224
           ET KN+YDG++  D+ TAL+ ++RTL+E+EPNY+ VTAR L
Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLL 226


>gi|223042914|ref|ZP_03612962.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           capitis SK14]
 gi|222443768|gb|EEE49865.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           capitis SK14]
          Length = 701

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 164/709 (23%), Positives = 287/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + +     + ++  +      Y   F +Y EE ++    +   + F
Sbjct: 32  DQEALKVYLEEIHDKTI-YFDDEIERLHYLVDNDFYFNVFEKYSEEELREITEYAKSIHF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 91  QFASYMSASKFYKDYALKTNDKSQFLEDYNQH---------------VAIVALYLANGDT 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 371

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             +G +  SNLCTEI         N    +  +    S NL +    N  +  K   ++ 
Sbjct: 372 SDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIVNVMESGKFRDSVH 431

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER  +Y  F  S +  G +       +      +VR     +
Sbjct: 492 FFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSKEFEPQFEKVRQLFDGL 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 552 DIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 641 LVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 689


>gi|289575761|ref|ZP_06455988.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis K85]
 gi|289540192|gb|EFD44770.1| ribonucleoside-diphosphate reductase subunit alpha nrdE
           [Mycobacterium tuberculosis K85]
          Length = 783

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 163/670 (24%), Positives = 274/670 (40%), Gaps = 74/670 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 71  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686

Query: 885 LDF--IYRQA 892
           ++   IYR A
Sbjct: 687 VNKAQIYRLA 696


>gi|314933043|ref|ZP_07840409.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           caprae C87]
 gi|313654362|gb|EFS18118.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           caprae C87]
          Length = 701

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 163/709 (22%), Positives = 287/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  L+++  + +     + ++  +      Y   F +Y EE ++    +   + F
Sbjct: 32  DQEALKVYLKEIHDKTI-YFDDEIERLHYLVDNDFYFNVFEKYSEEELREITEYAKSIHF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 91  QFASYMSASKFYKDYALKTNDKSQFLEDYNQH---------------VAIVALYLANGDT 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKERKDFYMFAPHTVKQEYGVTL 315

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 371

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             +G +  SNLCTEI         N    +  +    S NL +    N  +  K   ++ 
Sbjct: 372 SDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIVNVMESGKFKDSVH 431

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER  +Y  F  S +  G +       +      +VR     +
Sbjct: 492 FFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSQEFEPQFEKVRQLFDGL 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 552 DIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 641 LVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 689


>gi|296111475|ref|YP_003621857.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833007|gb|ADG40888.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 723

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 166/765 (21%), Positives = 289/765 (37%), Gaps = 120/765 (15%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+       +   L  E F    +     R   E      +  L   L  +  
Sbjct: 35  EALDAFLKENVWPNVMQFDSL-SERFDWLFQNNFLERTFIEKYRFEFIESLYAYLDAQHF 93

Query: 291 FAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++     Y++Y L  N     +E       RVAM        +E+ A+   + +  
Sbjct: 94  NFKSFMAAFKFYNQYALKTNDGQHYVETYVD---RVAMNALFYADGREELALRLADEMIH 150

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + +
Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNI 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA +      + G++P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPVMAIANSAGGIVPVMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMSFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENY 525
              D++ R   ++    +PD F + V +N    LFSP +V     +YGK F        Y
Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYELVKKNDVMYLFSPVDV---EKVYGKAFNYIDITAEY 327

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +      +I  ++ + A  L  ++  +  E+G+P+I   D  N        G + SSNLC
Sbjct: 328 DNMVANDQITKYK-VDARTLEEEISKLQQESGYPYIINIDVANR--SNPISGKIVSSNLC 384

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI               +       CNLGSIN++   A           ++ T VR L 
Sbjct: 385 SEILQVQTPSDIDNGQQYTRLGSDVSCNLGSINIVNMMAT-----ADFGESVDTMVRALT 439

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D +    +    K NH   AIGLG MG  +      + Y   EA++        +++
Sbjct: 440 YVSDTSNLDVVPSIAKGNHEKHAIGLGAMGLAAYFAQNKMYYGDDEALDFTSTFFMTLNY 499

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR------DELAMNRTSRLP 745
           ++I ASV +A+E    +  F  S +  G +    +      +           +  ++  
Sbjct: 500 YSIKASVAIAKERHEKFFEFDKSTYANGSYFDKYLETDWAPKTNKVIEAFAQHHIPTKHD 559

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W +L+  V   GM N+   AIAPT +I+ +   + ++ P    +  +   M G       
Sbjct: 560 WVQLRDDVAKYGMYNAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQEGMIGKVYYPAP 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                     L +E M                        + +A++ D   +I+  +  Q
Sbjct: 620 ---------GLNNETM----------------------PYYVSAYDTDMRKVIDVYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + IDQ  +L L++                ++ + + L  +   A+  G+K+ YY+R+   
Sbjct: 649 EHIDQGMALTLFMRSTLPDGLYEWKNNRTNKMTTRDLTILRHYAFNKGIKSLYYIRT--- 705

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                 T    +  +N                        ECE C
Sbjct: 706 -----FTDDNQESGVN------------------------ECESC 721


>gi|329736710|gb|EGG72975.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU028]
          Length = 701

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 162/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + + +   + ++  +      Y   F +Y E  +     +   + F
Sbjct: 32  DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELIEITEYAKSIHF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 91  QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++G +  SNLCTEI         N    E  +    S NL +    N  +  +   ++ 
Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGEFRDSVF 431

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER   Y  F+ S +  G +       +      +VR     +
Sbjct: 492 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 552 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 641 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|225870272|ref|YP_002746219.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           equi subsp. equi 4047]
 gi|225699676|emb|CAW93382.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus equi subsp. equi 4047]
          Length = 719

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 161/719 (22%), Positives = 279/719 (38%), Gaps = 86/719 (11%)

Query: 228 LRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      E     ++         ++     + +LA  ++
Sbjct: 28  LHKDKEALEAFFTENVIPNTMSFSSINEKIAYLVDNDYIESAFIQNYSPEFISHLAKSIQ 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            E      ++     Y +Y L  N     +E  +   M  A+  A      E  A +   
Sbjct: 88  AEGFRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYFA---DGDETLAKDLAI 144

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +    NA   LFSP  V   + L    +     
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARHNADMYLFSPYSVEREYGL-PFNYIDITS 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 MYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVINIDTANR--SNPIDGKIIMSN 380

Query: 584 LCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI    +                  CNLGS N+L    +          +IR   R 
Sbjct: 381 LCSEILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSP-----DFGRSIRAMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +
Sbjct: 436 LTFVTDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S ++A+ER   +  F+ S +  G +    I         L+  +  +  + + 
Sbjct: 496 NYWTLVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
           +   W  L++ + T G+ + N +A+AP  +I+ I   S SI P  Q +  +     G   
Sbjct: 556 A--DWKALRQAIMTDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  D    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   K +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATKHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|319401191|gb|EFV89406.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis FRI909]
          Length = 701

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 163/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + + +   + ++  +      Y   F +Y E  +     +   + F
Sbjct: 32  DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELSEITEYAKSIHF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 91  QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 316 DDIDLEKYYDDMVANPNIEKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ 
Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 431

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER   Y  F+ S +  G +       +      +VR     +
Sbjct: 492 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 552 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 641 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|77413116|ref|ZP_00789316.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
 gi|77160817|gb|EAO71928.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 515]
          Length = 719

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 160/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +     ++                +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           EK A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEKLATDLALEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLRDAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPI--DGKIIMSNLC 382

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +          +  +     +     
Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                       L  + +                        + +A+++D   +I+  + 
Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  S+ L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|282918524|ref|ZP_06326261.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282317658|gb|EFB48030.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C427]
          Length = 718

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 161/695 (23%), Positives = 285/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 61  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      + R+    M   +   W +L++ 
Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKARELFDGMAIPTSEDWKKLQQD 582

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706


>gi|227550161|ref|ZP_03980210.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium TX1330]
 gi|257897485|ref|ZP_05677138.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12]
 gi|227180728|gb|EEI61700.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus
           faecium TX1330]
 gi|257834050|gb|EEV60471.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12]
          Length = 827

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 168/813 (20%), Positives = 297/813 (36%), Gaps = 129/813 (15%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           +R ++  L R     +  K    T  ++  L      +Y   G+        + + +   
Sbjct: 36  SRLIM--LDRYAFKDMSGKT--LTVGDLVILTTHADPQYPARGI------GKIEEINKEQ 85

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMGLALKETEK 335
           L   ++ E   +      + +     +       E P   +      RVA G++  E EK
Sbjct: 86  LIIRIEEEFQSSLTDP--EEIASGRVIRNINEV-EKPLELYFEQIAARVARGISDIEGEK 142

Query: 336 E-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAM 392
           + +   EFY  L+  + + +   L+ +GT       +C++   + D   G+    QE   
Sbjct: 143 KAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVME 202

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           +    GG+G + + +R   A +HG NGKS G + +L    +    V QGG R+GA    L
Sbjct: 203 IMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIML 262

Query: 453 ETWHIDVEEFL--------------------------------DLRKNTGDDRRRTHDMN 480
             WH D+ EF+                                +       +       +
Sbjct: 263 NDWHPDIFEFIISKIQNPAILQNLIHTSQSPTVRQLASEKLTFEPLTANEKEWLEFLVDH 322

Query: 481 TANWIPDLFMK----RVTQNAGWTLFSPD----------------EVSDLHDLYGKEF-- 518
             N + D F+K    ++     +++  PD                E  +    Y   F  
Sbjct: 323 PTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGANISVCLTKEFMEAVETDQTYELRFPA 382

Query: 519 ------EIAYENYERQADRGEIKVF----------RKISAVALWRKMLTMLFETGHPWIT 562
                     +  +   + G+++ +          + I A  LW  +      +  P I 
Sbjct: 383 IEDYDASEMADYDQHWMEIGDVREWAETGRKVKIHQTIKARELWDLITYCATYSAEPGIF 442

Query: 563 FKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
           F D  N  +  Q +   V ++N C E  L       AVCNL +INL           D++
Sbjct: 443 FIDNANEMTNAQAYGQKVVATNPCGEQPLTPY----AVCNLAAINLANMVDKKTKVVDFE 498

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KL   +R +VR  DNVID   +  +K ++     R +GLG+MG    L      Y S + 
Sbjct: 499 KLTDVVRASVRFQDNVIDATPYFFKKNEQQAKGERRVGLGVMGLADLLIYCEKVYGSEDG 558

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             + D+  E I+  A   SVELA+E+G++    G           ++     +R     +
Sbjct: 559 NRLVDQVFEKIAVTAYQTSVELAKEKGSFPFLVG----------KTVEETTALRQRFIES 608

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +   + +++ +   G+RNS+ + +APT +   + GVS  ++P +   Y +S   G F
Sbjct: 609 GYMKKMPESIRQAILKYGIRNSHLLTVAPTGSTGTMAGVSTGLEPYFSFSYFRSGRLGKF 668

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN+ +V+E  ++                   N E+  D+L     TA E+ P   +  
Sbjct: 669 IEVNAEIVSEYLEK-------------------NPEKTADNLPPFFVTAMELSPKDHVSV 709

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLK 917
               Q+W+D + S  +        K++  IY   +  G K        S  + V      
Sbjct: 710 QCTIQRWVDSSISKTVNAPKGYQVKQVAAIYEDLYQGGAKGGTVYVDGSRDSQVLTLEAD 769

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
               +   V V D   +  SL    +      C
Sbjct: 770 DNVFEEPVVGVADNQITLDSLESSEAEEICPIC 802


>gi|114776813|ref|ZP_01451856.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1]
 gi|114552899|gb|EAU55330.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1]
          Length = 723

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 145/658 (22%), Positives = 263/658 (39%), Gaps = 69/658 (10%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSS 348
           F+     I   +Y L    G  I++  QA + RVA  LA    E  +E     F   L++
Sbjct: 26  FQPASEDIWDKKYRLKDKLGREIDLDIQATYDRVATALAQVENEDVRELWHERFVWALAN 85

Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGND 403
                +   + N+G    +      +C ++ T+PD + GI   + E  +  K   G+G +
Sbjct: 86  GAI-PAGRIMSNAGAEAHKPATSTINCTVSGTIPDSMTGILSMVHEAGLTLKAGCGIGYE 144

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA++ G    + G + F+ + +     V+  G R+GA     +  H D+ EF+
Sbjct: 145 FSTLRPKGAYVSGAGAYTSGPMSFMDIYDKMCFTVSSAGGRRGAQMGTFDISHPDIVEFI 204

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             ++    +  R    N +  I   FM+ V  +A W L  P   +++ D   +       
Sbjct: 205 RAKR----EDGRLRQFNLSCLITRDFMEAVKHDADWDLVFPASQTEIDDADTRIVFKPVA 260

Query: 524 NYERQADRGE-----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           N  + + + +      KV++ + AV LW  ++   ++   P     D  N  +       
Sbjct: 261 NPPKGSVKDDRGHVACKVYKTMKAVRLWDVIMASTYDYAEPGFILIDEVNEMNNNWFCED 320

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLD 633
           V ++N C E  L         C LGS+NL     +       FD+D     +    R+LD
Sbjct: 321 VRATNPCGEQPLPPY----GACLLGSVNLTRFVRDPFTDNARFDWDTYREVVSIFTRMLD 376

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV++IN   +EK ++     R  G+G +G  S L +L  PY S E++   ++    ++  
Sbjct: 377 NVVEINGLPLEKQRQEIMRKRRHGMGFLGLGSTLTMLRTPYGSTESLAFTEQIAYEMART 436

Query: 694 AISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746
                +EL  E+GA       Y      +  +     D I +   V  ++   + SR   
Sbjct: 437 GFQTGLELVDEKGAAPALTDLYEITPEMMAKRPEMADDGIKIGDMVAGKVLWGKYSRYMQ 496

Query: 747 D-----------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793
                        L + ++  G R ++  +IAPT TI+       S  I+PS+ + Y ++
Sbjct: 497 KFRDTANAEDAAMLDELIEK-GCRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 555

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHAT 847
                        + E ++     +    +L  +   I N + +P        L     +
Sbjct: 556 I------------IREGRKSKEKVDVFSYELLAYRAHI-NADAMPYATDENAKLPDYFIS 602

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           A E+ P   ++  +  Q+W+D + S    +  E    +   IY  A+  GLK     R
Sbjct: 603 ADEVTPKQHVDIQAAAQRWVDSSISKTANVPTEFPYDEFKDIYLYAYEQGLKGCTTFR 660


>gi|242242100|ref|ZP_04796545.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis W23144]
 gi|242234413|gb|EES36725.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           epidermidis W23144]
          Length = 698

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 162/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + + +   + ++  +      Y   F +Y E  +     +   + F
Sbjct: 29  DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELSEITEYAKSIHF 87

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +        + Y  H               VA+          
Sbjct: 88  QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 132

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           K+A +F + +    +  +TPT  N+G     +L SCFL  + D L  I         L+K
Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEIDDSLNSINFIDSTAKQLSK 192

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   +   L
Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              + E  Y++     +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 313 DDIDLEKYYDDMVANPNIEKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 368

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            ++G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ 
Sbjct: 369 SNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 428

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 429 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 488

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER   Y  F+ S +  G +       +      +VR     +
Sbjct: 489 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 548

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
           +  +   W EL+ +V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 549 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 608

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 609 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 637

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 638 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686


>gi|260206384|ref|ZP_05773875.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis K85]
          Length = 751

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 163/670 (24%), Positives = 274/670 (40%), Gaps = 74/670 (11%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDF--IYRQA 892
           ++   IYR A
Sbjct: 655 VNKAQIYRLA 664


>gi|88800235|ref|ZP_01115803.1| hypothetical protein MED297_14097 [Reinekea sp. MED297]
 gi|88777081|gb|EAR08288.1| hypothetical protein MED297_14097 [Reinekea sp. MED297]
          Length = 716

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 128/623 (20%), Positives = 248/623 (39%), Gaps = 55/623 (8%)

Query: 321 FMRVAMGLALKETEK--EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           F RVA  L+  E  K  +K   E +        + +   + N+G    +      +C ++
Sbjct: 47  FARVAEALSSVEKNKAKKKEWHEKFLWALENGAIPAGRIVSNAGALEHKPATSTINCTVS 106

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D + GI   + E  +  K   G+G +++ +R   A + G    + G + F+ + + 
Sbjct: 107 GTIEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKNAFVSGAGAYTSGPLSFMDIYDK 166

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA  A  +  H DV +F+  ++    +  R    N +  I   FM+ V
Sbjct: 167 MCFTVSSAGGRRGAQMATFDVSHPDVVDFIRAKR----EDGRLRQFNLSLLITMEFMEAV 222

Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             +  W L  P           +V++   +  K++ +     +        +V+R I A 
Sbjct: 223 KNDTDWPLVFPVSEAEVLRDGLDVNNPEQVIWKDWHVKDPYLQNDKGEIACRVYRIIKAR 282

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            LW  ++T  ++   P     D  N  +       + ++N C E  L         C LG
Sbjct: 283 NLWNVIMTSTYDYAEPGFILIDKVNEYNNNWFCETIRATNPCGEQPLPPY----GSCLLG 338

Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           S+NL     +       F++DK    +R   R+LDNV++IN   + + +      R  G+
Sbjct: 339 SVNLTRFVEDPFTENAKFNWDKFHEVVRIFTRMLDNVVEINGLPLPEQRDEITRKRRHGM 398

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----S 714
           G +G  S + +L + Y    +V   +E  + ++      +++LA+E+G     +     +
Sbjct: 399 GYLGLGSTITMLRMKYGDEASVAFTEEVTKAMALAGWETALDLAKEKGPAPIMEEEFEIT 458

Query: 715 LWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMA 765
                  P    D   +  ++   +   + SR          EL   +  +G R ++  +
Sbjct: 459 HEMVRKRPELLKDGYQVGDKLPGRILHAKYSRYMQQINDIAPELVDELAKVGARFTHHSS 518

Query: 766 IAPTATIAN-ICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           IAPT TI+  I    S  I+PS+ + Y ++ +               ++ D++   +++ 
Sbjct: 519 IAPTGTISLSIANNASNGIEPSFAHHYSRNVI--------RAGKKSKEKVDVFSFELLAY 570

Query: 824 LKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            K  +         P+  L     T+  ++P   ++  +  Q WID + S    +  + +
Sbjct: 571 RKLVNDKAMPYSDEPEAQLPDYFITSDSVEPKQHVDIQAASQIWIDSSISKTANVPTDYA 630

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
                 IY  A+  GLK     R
Sbjct: 631 FDSFKDIYLYAYEQGLKGCTTFR 653


>gi|226312722|ref|YP_002772616.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus
           brevis NBRC 100599]
 gi|226095670|dbj|BAH44112.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus
           brevis NBRC 100599]
          Length = 694

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 157/673 (23%), Positives = 281/673 (41%), Gaps = 53/673 (7%)

Query: 260 IEEGVKARLLHESMMDFDLVYLAND--LKYERDFAF-EYLGLQILYDRYFLHINGSRIEM 316
           ++  ++          + +  +     L Y+ DF F  Y+ +   Y  Y L  N   + +
Sbjct: 49  MDYLIENDFYENVYETYTVEQVDEVFRLAYDADFQFASYMAISKFYKDYALKTNDKSMYL 108

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
            Q    RVA+            A      +       +TPT  N+G     ++ SCFL  
Sbjct: 109 EQYP-DRVAVVALSLGQGDFDLAKRLTVSMMDQRLQPATPTFLNAGKSRRGEMVSCFLLE 167

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  I   L     L+K  GG+  + + +RG G  I G  G ++GV+P LK+  D  
Sbjct: 168 MDDSLNSINFILGTCMQLSKIGGGVAVNLSKLRGRGEPIKGVEGAAKGVMPVLKLLEDAF 227

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +Q G+RKG+  AY   +  D+ EFLD +K   D++ R   ++    +P++F K   +
Sbjct: 228 SYADQMGQRKGSGAAYYNIFGWDINEFLDCKKINADEKARIKTLSIGLIVPNVFYKLAEE 287

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N   T+F+P  V   + ++  + +   E YE       IK    +SA  +  K+  +  E
Sbjct: 288 NKPLTVFAPYSVYKEYGVHLDDMD-LDEMYEELLANDRIKKKTVMSAREMLTKIAMIQME 346

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG-------SINLL 608
           +G+P+I  K   N     + +G V  SNLCTEI     +                S NL 
Sbjct: 347 SGYPYIMNKTNANNNHALKDLGSVKMSNLCTEIFQLQETSTITNYGEMDIIRRDISCNLA 406

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +    N  +   +  ++   +  +  V D+         +K+N    ++GLG M     L
Sbjct: 407 SLNIVNVMERKMIRESVHEGIEAITAVSDMTRVENAPGVQKANRELHSVGLGAMNLNGYL 466

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPI--- 723
               I Y S EA + A      ++F+++  S+E+A+E G  +  F+ S + +G +     
Sbjct: 467 AKNRIAYESEEAKDFARTFFMMMNFYSLEKSMEIARETGMTFLGFEQSEYAKGTYFNKYV 526

Query: 724 --DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
             D      + +     M+  +   W EL+++V+  G+ ++  +AIAPT +I+ I   + 
Sbjct: 527 TNDYSPRTEKAKLLFEGMHIPTPADWAELQQKVQKHGVYHAYRLAIAPTQSISYIQNATS 586

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           S+ P  +++  ++  +        +L                                 +
Sbjct: 587 SVMPIVEHIETRTYANSTTYYPMPYL-------------------------------SQE 615

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
               + +A+ ID   +I+  +  Q+ IDQ  S  L+++   S ++L   Y  A   GLK+
Sbjct: 616 NYFYYKSAYVIDQFKVIDLIAEIQEHIDQGISTVLHVNSNISTRELARYYIYAAKKGLKS 675

Query: 900 TYYLRSRSATSVE 912
            YY R++  T  E
Sbjct: 676 LYYTRTKHLTVEE 688


>gi|82750435|ref|YP_416176.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus RF122]
 gi|82655966|emb|CAI80370.1| ribonucelotide diphosphate reductase alpha chain [Staphylococcus
           aureus RF122]
          Length = 698

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 41  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 100

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 383 IFQLQETSIINDYGIEDEIQRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686


>gi|294631833|ref|ZP_06710393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. e14]
 gi|292835166|gb|EFF93515.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. e14]
          Length = 962

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 124/628 (19%), Positives = 228/628 (36%), Gaps = 37/628 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 125 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 184

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 243

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H DVE+F++ +    +  R   D              +            + ++    
Sbjct: 244 VDHPDVEDFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 293

Query: 514 YGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
              EF  A E   +   R     +V  ++ A +L+RKM    +    P I + D  N   
Sbjct: 294 VNDEFMKAVEQGGKFGLRARMTGEVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINHWH 353

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626
                G ++ SN C+E        +   CNL S+NL+         +  F+ ++ A  + 
Sbjct: 354 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGHQSFEVERFAKVVE 409

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
             +  +D  I       +K  ++    R +G+G     + L      Y S     +A   
Sbjct: 410 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 469

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TS 742
              ++  A   S ELA   G Y  +  +               A       ++      +
Sbjct: 470 TSLMTGTAYKRSAELAAVVGPYDGYARNAQPHQRVMKQHADANAAAVRMDDLDTPVWAAA 529

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              W ++ +  +  G RNS    +APT TI       +  ++P    + + K    G   
Sbjct: 530 TEAWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQ 589

Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855
           +VN  +   L++    +E + + +      G++ +   +  +  ++   A     I PM 
Sbjct: 590 IVNGTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAPGLKQEHYEVFDCAMGERAISPMG 649

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +  Q WI  A S  + +    + ++++ IY +AW +G+K     R         S
Sbjct: 650 HVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQPLS 709

Query: 915 -TLKGVDGKLNAVPVTDPNSSTHSLGIP 941
              K  + K  AV              P
Sbjct: 710 AKTKDSEKKTEAVEEPQAKVEKVVEYRP 737


>gi|153005059|ref|YP_001379384.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028632|gb|ABS26400.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Anaeromyxobacter sp. Fw109-5]
          Length = 929

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/621 (19%), Positives = 231/621 (37%), Gaps = 29/621 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385
           G    E +      +  +L+       ++P  FN     HPQ S+CF+ +V D +  I  
Sbjct: 115 GYFATEEDAAAFEADLAHLVYRQKMSFNSPVWFNVGVEEHPQCSACFINSVGDSMDSILR 174

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444
                 ML KY  G G++ + +R     + G  G++ G + F++  +  A  +  GGK R
Sbjct: 175 LAHTEGMLFKYGSGAGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 233

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF+  + +         D              V   A  ++F  
Sbjct: 234 RAAKMVILDADHPDIGEFVSCKADEEKKAWALIDAGYDGGFN------VKGGAYDSVFFQ 287

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    +    G    +  +       R +      I A  L R++    +  G P + F 
Sbjct: 288 NANHSIRVTDGFMRSVLDDRAWELTARTDGHALESIRARDLMRQITEAAWLCGDPGMQFD 347

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623
              N          +++SN C+E        + + CNL S+NL+     +  FD +    
Sbjct: 348 TTINAWHTCPATDRINASNPCSEYMF----LDDSACNLASLNLMHFRGIDGAFDVESFKR 403

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   V   + ++    +  E+  K++  +R +GLG     + L    +PY S      A
Sbjct: 404 AVDLTVLAQEILVSNAKYPTEQIGKNSEDYRPLGLGYANLGALLMASGLPYDSDGGRACA 463

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRDELAMNR 740
                 ++  A + S  +A+  G ++ ++ +            + +  +     E  +  
Sbjct: 464 GAITALMTGEAYAMSARIAERMGPFAGYERNREPFLGVVRKHANHVDRIDPTFVERPLLD 523

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
            +R  W +  +     G RN+    +APT TI  +    +  I+P    + Y K    G 
Sbjct: 524 AARDAWGDALRLGTQSGYRNAQLTVLAPTGTIGFMMDCDTTGIEPDIALVKYKKLVGGGV 583

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF------- 849
             +VN+ +   L++     +A+ S L++ D   +I     + D    +   AF       
Sbjct: 584 LKIVNNTVPLALQRLGYSADAIASTLEFIDKVETIEGAPELRDAHLPVFDCAFKPQNGTR 643

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I  M  I      Q ++  A S  + +  E +   ++  Y +AW +GLK     R    
Sbjct: 644 SIHYMGHIRMMGAVQPFLSGAISKTVNMPTEATPADIETAYLEAWKLGLKAIAVYRDGCK 703

Query: 909 TSVEKSTLKGVDGKLNAVPVT 929
            S   +T K  + +       
Sbjct: 704 RSQPLNTGKAKEEEKRESAGE 724


>gi|76787476|ref|YP_329565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae A909]
 gi|76562533|gb|ABA45117.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus
           agalactiae A909]
          Length = 719

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 158/717 (22%), Positives = 279/717 (38%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +     ++                +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           E+ A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEELATDLALEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382

Query: 586 TE------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +E                        CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQKPSLINDTQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +          +  +     +     
Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                       L  + +                        + +A+++D   +I+  + 
Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  S+ L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|120554013|ref|YP_958364.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinobacter aquaeolei VT8]
 gi|120323862|gb|ABM18177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Marinobacter aquaeolei VT8]
          Length = 712

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 131/623 (21%), Positives = 252/623 (40%), Gaps = 56/623 (8%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374
           + RVA  LA  E +  ++K   EF   L +     +     N+G    +      +C ++
Sbjct: 44  YERVAKALAEVEKKNLRDKYMKEFLWALQNGAI-PAGRITSNAGAEAHKPATSTINCTVS 102

Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            T+ D +  I     E  +  K   G+G +++ +R  GA++ G    + G + F+ + + 
Sbjct: 103 GTIQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPRGAYVAGAGATTSGPLSFMDIFDR 162

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
               V+  G R+GA  A  +  H DV EF+  ++    +  R    N +  I + F++ V
Sbjct: 163 MCFTVSSAGGRRGAQMATFDVHHPDVIEFIQAKR----EDGRLRQFNLSLLITEDFIEAV 218

Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
                W L  P           +++D      ++F +          +   ++++ + A 
Sbjct: 219 RNGDDWHLSFPVTQKEADDEGLDLTDASQFVYRDFPVQEGYVVNNEGKVACRIYKTVKAQ 278

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            +W  ++T  ++   P     D  N  +       + ++N C E  L         C LG
Sbjct: 279 FIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPY----GSCLLG 334

Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           S+NL             F+Y+K    + T  R+LDNV++IN   + + +      R  G+
Sbjct: 335 SVNLTKFVEYPFTEKASFNYEKYRKVVGTFTRMLDNVVEINGLPLGEQRHEITYKRRHGM 394

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----S 714
           G++G  S L +L +PY S E+V+  +E +  ++      S+ LA+E+G           +
Sbjct: 395 GILGLGSTLAMLRMPYGSDESVKFTEEVVREMAVEGWRQSLALAEEKGPAPIMDDEFEVT 454

Query: 715 LWDQGVFPI---DSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMA 765
                  P    D I +  +V+ ++   + S           EL  ++   G R ++  +
Sbjct: 455 PKMMTKCPKLAEDGIKVGDKVKGKVLHAKYSAYMGRIAEVEPELVAKLAEKGGRFTHHTS 514

Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI-S 822
           IAPT TI+       S  I+PS+ + Y ++ +               ++ D++   ++  
Sbjct: 515 IAPTGTISLSLANNASNGIEPSFSHHYARNII--------REGRKTKEKVDVFSFELLAY 566

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
               + G++   E     L     T+ ++ P   ++  +  QKW+D + S    +  E  
Sbjct: 567 RHLVNPGAMPFSEDEDKKLPSYFTTSDDVTPTQHVDIQAAAQKWVDSSISKTANVPTEFP 626

Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904
            +    IY  A+  GLK     R
Sbjct: 627 YQDFKDIYLYAYDKGLKGCTTFR 649


>gi|323438920|gb|EGA96655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus O11]
 gi|323441868|gb|EGA99508.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus O46]
          Length = 698

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 287/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++ ++      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 41  KDKTIFFDTEIERLSYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 100

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 383 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686


>gi|22536983|ref|NP_687834.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae 2603V/R]
 gi|77405563|ref|ZP_00782654.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
 gi|77410694|ref|ZP_00787053.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|22533838|gb|AAM99706.1|AE014229_7 ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 2603V/R]
 gi|77163230|gb|EAO74182.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae CJB111]
 gi|77175870|gb|EAO78648.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae H36B]
          Length = 719

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 159/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +     ++                +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           E+ A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEELATDLALEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +          +  +     +     
Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                       L  + +                        + +A+++D   +I+  + 
Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  S+ L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|288904914|ref|YP_003430136.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           gallolyticus UCN34]
 gi|288731640|emb|CBI13197.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus
           gallolyticus UCN34]
          Length = 719

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 275/709 (38%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +     I+                +  LA DL+ + 
Sbjct: 32  KEALRAFFRENVIPNSMAFDTIIDK-INYLIDNDYIEPEFISKYTPDFIESLAKDLQAQG 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N  +   E  +    R+           E+ A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGKYYLESIED---RILFNALYFADGNEELARDLATEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +  SCFL +V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGV-PYSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +      I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 327 KMVANPNIVKTK-IRARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           E+           ++E        S NL +    N  D      +I+   R L  V D  
Sbjct: 384 EVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMDSPDFGRSIKAMTRALTFVSDTS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +   +   K  N      GLG MG  + L   HI Y SPE++E  +     +++  +  S
Sbjct: 444 SIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVES 503

Query: 699 VELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
             +A+E +  +  F+ S +  G +    I      + +            S   W +L+ 
Sbjct: 504 NHIARERQQTFVGFENSKYADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +     G             
Sbjct: 564 AVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP-------- 615

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +  D    + +A+++D   +I+  +   + +DQ 
Sbjct: 616 -----------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 653 LSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|25010892|ref|NP_735287.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae NEM316]
 gi|23095271|emb|CAD46481.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 719

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 160/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +     ++                +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           EK A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEKLATDLALEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPI--DGKIIMSNLC 382

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +          +  +     +     
Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                       L  + +                        + +A+++D   +I+  + 
Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  S+ L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|295406452|ref|ZP_06816258.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|294968597|gb|EFG44620.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
          Length = 698

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 41  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 100

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 383 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686


>gi|253731357|ref|ZP_04865522.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253724882|gb|EES93611.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|302750628|gb|ADL64805.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|320139938|gb|EFW31799.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141973|gb|EFW33801.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 698

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 41  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 100

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 383 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686


>gi|215447327|ref|ZP_03434079.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T85]
          Length = 699

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 160/668 (23%), Positives = 271/668 (40%), Gaps = 72/668 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDFIYRQA 892
           ++     A
Sbjct: 655 VNKAQIYA 662


>gi|15923721|ref|NP_371255.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926408|ref|NP_373941.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus N315]
 gi|156979059|ref|YP_001441318.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|258418264|ref|ZP_05682529.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9763]
 gi|258421561|ref|ZP_05684486.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9719]
 gi|258430756|ref|ZP_05688468.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9299]
 gi|258441752|ref|ZP_05691024.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A8115]
 gi|258445807|ref|ZP_05693984.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6300]
 gi|258449618|ref|ZP_05697720.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6224]
 gi|258454018|ref|ZP_05701990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5937]
 gi|282894499|ref|ZP_06302728.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A8117]
 gi|282926596|ref|ZP_06334226.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A10102]
 gi|13700622|dbj|BAB41919.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246500|dbj|BAB56893.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|156721194|dbj|BAF77611.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|257839057|gb|EEV63536.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9763]
 gi|257842487|gb|EEV66911.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9719]
 gi|257849428|gb|EEV73398.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A9299]
 gi|257852221|gb|EEV76148.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A8115]
 gi|257855383|gb|EEV78321.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6300]
 gi|257857126|gb|EEV80025.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A6224]
 gi|257863883|gb|EEV86639.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5937]
 gi|282591489|gb|EFB96561.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A10102]
 gi|282763212|gb|EFC03343.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A8117]
 gi|285816433|gb|ADC36920.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus aureus 04-02981]
          Length = 718

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 61  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 120

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706


>gi|151220912|ref|YP_001331734.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|257424851|ref|ZP_05601278.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427519|ref|ZP_05603918.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430150|ref|ZP_05606534.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432851|ref|ZP_05609211.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435755|ref|ZP_05611803.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|258452939|ref|ZP_05700933.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5948]
 gi|282903361|ref|ZP_06311252.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905139|ref|ZP_06312997.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908117|ref|ZP_06315948.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910376|ref|ZP_06318180.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913571|ref|ZP_06321360.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282922027|ref|ZP_06329724.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9765]
 gi|282923490|ref|ZP_06331170.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283769894|ref|ZP_06342786.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus H19]
 gi|283957563|ref|ZP_06375016.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500616|ref|ZP_06666467.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509564|ref|ZP_06668275.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524150|ref|ZP_06670837.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|150373712|dbj|BAF66972.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|257272421|gb|EEV04544.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275712|gb|EEV07185.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279347|gb|EEV09948.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257282266|gb|EEV12401.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284946|gb|EEV15065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257859450|gb|EEV82304.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus A5948]
 gi|282314358|gb|EFB44748.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322603|gb|EFB52925.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325768|gb|EFB56076.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327782|gb|EFB58064.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331964|gb|EFB61475.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282593685|gb|EFB98677.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9765]
 gi|282596316|gb|EFC01277.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283460041|gb|EFC07131.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus H19]
 gi|283791014|gb|EFC29829.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290921113|gb|EFD98174.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095621|gb|EFE25882.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467661|gb|EFF10176.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus M809]
          Length = 718

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 61  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706


>gi|319744838|gb|EFV97176.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           agalactiae ATCC 13813]
          Length = 719

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 159/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +     ++                +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           E+ A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFANGDEELATDLALEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +          +  +     +     
Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                       L  + +                        + +A+++D   +I+  + 
Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  S+ L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|225868772|ref|YP_002744720.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702048|emb|CAW99656.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptococcus equi subsp. zooepidemicus]
          Length = 719

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 158/719 (21%), Positives = 275/719 (38%), Gaps = 86/719 (11%)

Query: 228 LRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286
           L ++         +    + M      E     ++         ++     + +LA  ++
Sbjct: 28  LHKDKEALEAFFAENVIPNTMSFSSINEKIAYLVDNDYIESAFIQNYSPEFISHLAKSIE 87

Query: 287 YERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
            E      ++     Y +Y L  N     +E  +    RV           E  A +   
Sbjct: 88  AEGFRFKSFMAAYKFYQQYALKTNDGNFYLESIED---RVLFNALYFADGDEALAKDLAI 144

Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            + +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G  
Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGIS 204

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL
Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFL 264

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K   D++ R   ++    +PD F +    N    LFSP  V   + L    +     
Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARHNDDMYLFSPYSVEKEYGL-PFNYIDITS 323

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       I   + I A  L  ++  +  E+G+P++   D  N        G +  SN
Sbjct: 324 MYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVINIDTANR--SNPIDGKIIMSN 380

Query: 584 LCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631
           LC+EI    +                  CNLGS N+L    +          +I+   R 
Sbjct: 381 LCSEILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRA 435

Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           L  V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +
Sbjct: 436 LTFVTDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLM 495

Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741
           ++  +  S ++A+ER   +  F+ S +  G +    I         L+  +  +  + + 
Sbjct: 496 NYWTLVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQA 555

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800
           +   W  L++ V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G   
Sbjct: 556 A--DWKALRQAVMIDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIY 613

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                                               +  D    + +A+++D   +I+  
Sbjct: 614 YP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVY 642

Query: 861 SRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
           +   K +DQ  SL L+L                 + + L  +   A+  G+K+ YY+R+
Sbjct: 643 AAATKHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|258423380|ref|ZP_05686271.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9635]
 gi|257846441|gb|EEV70464.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9635]
          Length = 718

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 61  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMENGKFRDSVHSGMDALTVVSDVAN 462

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706


>gi|21282422|ref|NP_645510.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49482988|ref|YP_040212.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485603|ref|YP_042824.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651568|ref|YP_185667.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus COL]
 gi|87160290|ref|YP_493419.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|161508996|ref|YP_001574655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141145|ref|ZP_03565638.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253732822|ref|ZP_04866987.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|284023752|ref|ZP_06378150.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 132]
 gi|297208542|ref|ZP_06924971.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297590339|ref|ZP_06948978.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912634|ref|ZP_07130077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|14329709|emb|CAC40667.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus
           aureus]
 gi|21203859|dbj|BAB94558.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49241117|emb|CAG39795.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49244046|emb|CAG42472.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285754|gb|AAW37848.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126264|gb|ABD20778.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|160367805|gb|ABX28776.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253729187|gb|EES97916.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|269940308|emb|CBI48685.1| ribonucleoside-diphosphate reductase alphachain [Staphylococcus
           aureus subsp. aureus TW20]
 gi|283470025|emb|CAQ49236.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ST398]
 gi|296886797|gb|EFH25701.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297576638|gb|EFH95353.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694062|gb|ADI97284.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300886880|gb|EFK82082.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332441|gb|ADL22634.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312438844|gb|ADQ77915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315196403|gb|EFU26754.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|329313452|gb|AEB87865.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728551|gb|EGG64984.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 701

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 44  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 103

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689


>gi|148267191|ref|YP_001246134.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393240|ref|YP_001315915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus JH1]
 gi|253315836|ref|ZP_04839049.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255005522|ref|ZP_05144123.2| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794948|ref|ZP_05643927.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9781]
 gi|296275140|ref|ZP_06857647.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus MR1]
 gi|147740260|gb|ABQ48558.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945692|gb|ABR51628.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|257788920|gb|EEV27260.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus A9781]
 gi|312829223|emb|CBX34065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129413|gb|EFT85406.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|329724567|gb|EGG61074.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 701

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 44  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 103

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689


>gi|170017905|ref|YP_001728824.1| ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20]
 gi|169804762|gb|ACA83380.1| Ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20]
          Length = 723

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 169/764 (22%), Positives = 293/764 (38%), Gaps = 118/764 (15%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L    K+       +   L  + F    +     R          +  L   L+ E  
Sbjct: 35  EALDAFLKENVWPNVLKFDSL-AQRFDWLFDNQFIEREFIAQYDLSFIEKLYAYLEGEHF 93

Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++     Y++Y L  N     +E       RVAM        +E  A++  + +  
Sbjct: 94  NFKSFMAAFKFYNQYALKTNDGQYYVETYVD---RVAMNALYYANGQESLALKLADEMIH 150

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + V
Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNV 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G    + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPVMGIANSAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSIFHPDIMAFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENY 525
              D++ R   ++    +PD F + V QN    LFSP +V     +YG+ F        Y
Sbjct: 271 ENADEKVRVKTLSLGLTVPDKFYELVRQNKTMYLFSPVDV---EKVYGQSFNYVDITAEY 327

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +   +   I  +R + A  L  ++  +  E+G+P+I   D  N        G + SSNLC
Sbjct: 328 DNMVENDAITKYR-VDARMLEEEISKLQQESGYPYIINIDVANR--ENPIAGKIVSSNLC 384

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI               +       CNLGSIN++   A   FD     +++ T VR L 
Sbjct: 385 SEILQVQRPSDIDNGQQYTRLGSDVSCNLGSINIVNMMATQDFD-----TSVDTMVRALT 439

Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D +    +    K N    AIGLG MG  +      + Y   EA++        +++
Sbjct: 440 FVSDTSNLDVVPSIDKGNKEKHAIGLGAMGLAAYFAQNQMYYGDEEALDFTTTFFMTLNY 499

Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR------DELAMNRTSRLP 745
           ++I +S+ +A+E    +  F+ S +  G +    I    + +           +  ++  
Sbjct: 500 YSIKSSMRIAKERHETFYEFEKSTYANGAYFDKYINNDWQPKTQKVAQAFAPHHLPTKND 559

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK  V   GM ++   AIAPT +I+ +   + ++ P    +  +             
Sbjct: 560 WLTLKDDVAKYGMYHAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQ------------ 607

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                       E MI  + Y          + D+    + +A++ D   +I+  +  Q+
Sbjct: 608 ------------EGMIGKVYY------PAPGLSDETMPYYVSAYDTDMRKVIDVYAAAQE 649

Query: 866 WIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
            IDQ  +L L++                   + + L  +   A+  G+K+ YY+R+    
Sbjct: 650 HIDQGMALTLFMRSTLSDKLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT---- 705

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                T    +  +N                        ECE C
Sbjct: 706 ----FTDDNQESGVN------------------------ECESC 721


>gi|256844763|ref|ZP_05550245.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613111|gb|EEU18318.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 674

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 168/708 (23%), Positives = 297/708 (41%), Gaps = 76/708 (10%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++    + E  NY             +E      +   +    +   L  E   
Sbjct: 13  DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 63

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 64  YLVDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 123

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 124 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 180

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 181 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 240

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 241 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 300

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q      ++ +  ISA   ++ +  + 
Sbjct: 301 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQ 357

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 358 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCN 417

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL   +  +V+ L+ V    +       +K N  +RAIGLG 
Sbjct: 418 LGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 473

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           M     L   HI Y SPEAVE        I++HA   S +LA+  GA+  FK S +  G 
Sbjct: 474 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGD 533

Query: 721 FPIDSIGLL--------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           +    I            E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I
Sbjct: 534 YFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 593

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + +   + S+ P    +  +         V ++                           
Sbjct: 594 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 626

Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
              +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL L++++
Sbjct: 627 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVED 671


>gi|24379141|ref|NP_721096.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           mutans UA159]
 gi|24377046|gb|AAN58402.1|AE014910_6 ribonucleotide reductase, large subunit [Streptococcus mutans
           UA159]
          Length = 719

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 164/760 (21%), Positives = 294/760 (38%), Gaps = 110/760 (14%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+  K        +  +       + ++A  + +   +F +  L+ DL    
Sbjct: 32  KEALEAFFKENVKPNTKTFDSITDKIQFLVANDYIEAEFIAKYKSEF-IEQLSQDLHAY- 89

Query: 290 DFAF-EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           DF F  ++     + +Y L  N     +E  +    RV           E  A +    +
Sbjct: 90  DFQFKSFMAAYKFHQQYALKTNDGEEYLESIED---RVLFNALYFADGNENLAHDLAMEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 IAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    IPD F +   +N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGVTIPDKFYELARRNEDMYLFSPYSIEREYGV-PYNYLDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +      +I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPKIIKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPI--DGKIIMSNLC 382

Query: 586 TEITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           +EI           ++E        S NL +    N         +I+   R L  V D 
Sbjct: 383 SEILQVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVTDS 442

Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
            +   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++  +  
Sbjct: 443 SHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLVE 502

Query: 698 SVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748
           S  +A+E +  +  F+ S +  G +    +          + E+     + +     W+ 
Sbjct: 503 SNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKIKELFKNHFIPQA--EDWEA 560

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807
           L++ V   G+ + N +A+AP  +I+ I  VS SI P  + +  +     G          
Sbjct: 561 LRQAVIKDGLYHQNRLAVAPNGSISYINDVSASIHPITRRIEERQEKKIGKIYYP----- 615

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                        +  D    + +A+++D   +I+  +   + +
Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATQHV 649

Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
           DQ  SL L++               + + + L  +   A+  G+K+ YY+R+        
Sbjct: 650 DQGMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT-------- 701

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T  G +   N                        ECE C
Sbjct: 702 FTDDGDEVGAN------------------------ECESC 717


>gi|302344178|ref|YP_003808707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfarculus baarsii DSM 2075]
 gi|301640791|gb|ADK86113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfarculus baarsii DSM 2075]
          Length = 604

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 161/669 (24%), Positives = 255/669 (38%), Gaps = 86/669 (12%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFYNLL 346
           F     ++L  RY       R E P+    RVA  +                A  F+ L+
Sbjct: 8   FAPEAAELLRRRYLAVGPDGRHESPERMLWRVARAVAAAEERWDGAASAAAMAGRFFELM 67

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +   F+ ++PTL N+G R  QLS+CF+  V D L  IF AL++ A++ K  GG G D++ 
Sbjct: 68  AGGLFLPNSPTLINAGRRLGQLSACFVLPVEDSLESIFEALKQAALIHKSGGGTGFDFSR 127

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  +  T G S G + F+ V +    AV QGG R+GA  A L  WH D+ EF+  +
Sbjct: 128 LRPRGDDVASTRGVSSGPLSFMHVFDVATEAVRQGGVRRGANMASLAAWHPDILEFVTAK 187

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +  G    R  + N + W  D FM    Q  GW L +P                      
Sbjct: 188 QTPG----RLENFNLSLWADDAFMDAAAQGRGWALRNPRH-------------------- 223

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   +    + A  L   +      +G P + F    N  +P   +G + + N C 
Sbjct: 224 -------GRTVATLEAAELLEVVARAAHASGEPGMLFGGAINRANPTPALGAIEAVNPCG 276

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           E  L         C LGS+ L         D+  L      A R LD+V++IN   + + 
Sbjct: 277 EQPLLPY----ESCVLGSLALPRFVRGGDMDWPALEEAAALATRFLDDVLEINRQPLPQV 332

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            +++   R IGLGL+G   AL +L + Y S  A ++A   M  ++  A   S  LA+ RG
Sbjct: 333 AEASLRTRKIGLGLLGLADALIMLGLAYDSQPARDLAGRVMARVTAAAREQSAALARRRG 392

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            + +F  S                                   +       MRN+    I
Sbjct: 393 DFPAFANS---------------------------------APRAAGAKN-MRNATVSTI 418

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN-SFLVNELKQRDLWDEAMISDLK 825
           APT  ++ + G S  I+P +   Y +    G    +     +  L+   L   A ++ L 
Sbjct: 419 APTGALSLLLGWSSGIEPLFALHYHRHMQDGQVLELTCRPFLQRLRALGLDSPANLAAL- 477

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
              G    ++ +P    ++ ATA +I P   +   +  Q+ +D   S  + L    +  +
Sbjct: 478 RAQGRASAVQGLPAAEARLFATAHQIAPHDHLAMQAACQRHVDNGVSKTINLPSAATVGQ 537

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           +  I+ QA  + LK     R                 +L+         ++     P SC
Sbjct: 538 VREIFLQAHALNLKGVTVFRHGCRMEQVL--------RLSPAAEGARVEASGGCETPPSC 589

Query: 945 TSDTECEVC 953
                   C
Sbjct: 590 GFSPASRAC 598


>gi|315194350|gb|EFU24742.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 701

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 44  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 103

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNLMESGKFRDSVHSGMDALTVVSDVAN 445

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689


>gi|289759176|ref|ZP_06518554.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit
           alpha [Mycobacterium tuberculosis T85]
 gi|289714740|gb|EFD78752.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit
           alpha [Mycobacterium tuberculosis T85]
          Length = 693

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 160/668 (23%), Positives = 271/668 (40%), Gaps = 72/668 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                            + +  A+EI    +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654

Query: 885 LDFIYRQA 892
           ++     A
Sbjct: 655 VNKAQIYA 662


>gi|171779599|ref|ZP_02920555.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281701|gb|EDT47135.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 719

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 155/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +         + +  +       + ++A  + +   DF +  L+ DL+  +
Sbjct: 32  KEALKAFFLENVIPNTMTFESITEKIDYLIANDYIEAEFIGKYSPDF-IENLSKDLQAHK 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    RV           E+ A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGSQYLESIED---RVLFNALYFADGNEELARDLALEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +  SCFL +V DD+  I  ++     L++  GG+G + + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNAIGRSINSALQLSRIGGGVGINLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    IPD F +   +N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKVRVKTLSLGITIPDKFYELARKNEDMYLFSPYSVEREYGV-PYSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +      I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 327 KMVANPNIVKTK-IKARDLETEISKLQQESGYPYVINIDTANRTNPI--DGKIIMSNLCS 383

Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           E+           ++E        S NL +    N         +I+   R L  V D  
Sbjct: 384 EVLQVQKPSIINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVSDTS 443

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           +  ++   K  N      GLG MG  + L   HI Y SPE++E  +     +++  +  S
Sbjct: 444 SIESVPTIKHGNEQAHTFGLGAMGLHTYLAQNHIHYGSPESIEFTNIYFMLLNYWTLVES 503

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751
            ++A+ER   +  F+ S +  G +    I      + +            S   W EL+ 
Sbjct: 504 NQIARERKQTFVGFEKSKYADGSYFDKYITGDFVPKSDRVKELFAEHFIPSGKDWAELRD 563

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N +A+AP  +I+ I  VS S+ P  Q +  +     G             
Sbjct: 564 AVMIDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP-------- 615

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                     +  D    + +A+++D   +I+  +   + +DQ 
Sbjct: 616 -----------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652

Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            SL L+L               + + + L  +   A+  GLK+ YY+R+
Sbjct: 653 LSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGLKSIYYIRT 701


>gi|297245178|ref|ZP_06929052.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297177849|gb|EFH37098.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
          Length = 721

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 64  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 123

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 124 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 168

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 169 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 228

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 229 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 288

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 289 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 348

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 349 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 405

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 406 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 465

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 466 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 525

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 526 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 585

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 586 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 641

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 642 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 674

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 675 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 709


>gi|77408851|ref|ZP_00785578.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
 gi|77172537|gb|EAO75679.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae COH1]
          Length = 719

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 159/717 (22%), Positives = 281/717 (39%), Gaps = 88/717 (12%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +     ++                +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           E+ A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEELATDLALEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +          +  +     +     
Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFTNHFIPEA-- 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                       L  + +                        + +A+++D   +I+  + 
Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
             + +DQ  S+ L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701


>gi|88194507|ref|YP_499302.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|294849401|ref|ZP_06790144.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295427308|ref|ZP_06819943.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|87202065|gb|ABD29875.1| ribonucleotide-diphosphate reductase alpha chain, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|294823933|gb|EFG40359.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295128696|gb|EFG58327.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 721

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 64  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 123

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 124 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 168

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 169 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 228

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 229 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 288

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 289 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 348

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 349 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 405

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 406 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 465

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 466 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 525

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 526 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 585

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 586 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 641

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 642 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 674

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 675 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 709


>gi|73663295|ref|YP_302076.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495810|dbj|BAE19131.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 701

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 160/709 (22%), Positives = 285/709 (40%), Gaps = 70/709 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +      LE+++ + +     + ++  +      Y + F +Y E  ++    +   + F
Sbjct: 32  DQEALEVYLEEIQDKTI-YFDTEIERLRYLVDNDFYFDLFAKYSEADLQEITDYAKSIPF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
           +     +  K+ +D+A +  G     + Y  H               VA+         +
Sbjct: 91  EFASYMSASKFFKDYALKTNGKSQYLEDYKQH---------------VAIVALYLANGHK 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
             A +F + +    +  +TPT  N+G     +L SCFL    D L  I         L+K
Sbjct: 136 ATAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEADDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  +   +   L
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFHMFAPHTIYKEYGLTL 315

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                +  Y+      +  + K      A  +   +     ++G+P++ FKD  N     
Sbjct: 316 DDINLDEYYDELVANPNIDKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 371

Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
             +G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ 
Sbjct: 372 SDIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESGKFKDSVH 431

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           T +  L  V D  +       +K+N    ++GLG+M     L    I Y S EA + A+ 
Sbjct: 432 TGMDALTVVSDEADIQNAPGVRKANRELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738
               +++++I  S+E+A+ER   Y  F+ S +  G +              +VR     +
Sbjct: 492 FFMMLNYYSIERSMEIAKERQEVYKDFEQSDYANGKYFEFYTSQTFEPKYEKVRKLFDGL 551

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W  L+++V+T G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +
Sbjct: 552 EIPTPEDWKALQEQVETNGLFHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 FL                                 +    + +AF  D M LI+
Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             S  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 641 LISTIQTHIDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|116494954|ref|YP_806688.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei ATCC 334]
 gi|227535044|ref|ZP_03965093.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631446|ref|ZP_04674477.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105104|gb|ABJ70246.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus casei ATCC 334]
 gi|227187359|gb|EEI67426.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525911|gb|EEQ64912.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 723

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 160/711 (22%), Positives = 283/711 (39%), Gaps = 74/711 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +       +   L  +     ++                L  L   L  + 
Sbjct: 34  KEALQAFLTENVAPNTMQFDSL-ADRLKYLVDNHYYEADFLNKYQPAFLEKLDQFLSAQH 92

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y +Y L  +     + + F  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDGTQYL-EDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENYE 526
             D++ R   ++    +PD +   +  NA   LFSP  V     +YGK F      + Y+
Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVYGKPFSYVDITKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  IK ++ I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 329 NMVANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385

Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI         N+  E   +    S NL +    N         ++   VR L  V D  
Sbjct: 386 EIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHS 445

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS
Sbjct: 446 NIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLKAS 505

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751
            ++AQER  ++ +F+ S +  G +              +VR     ++  ++  W+ LK 
Sbjct: 506 NKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKT 565

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N MA+AP  +I+ I   S S+ P    +  +     G        L N+ 
Sbjct: 566 SVMKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAPDLSND- 624

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A++ID   +I+  +  Q+ +DQ 
Sbjct: 625 ------------------------------TMPYYQSAYDIDMRKVIDVYAAAQQHVDQG 654

Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            ++ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705


>gi|301066518|ref|YP_003788541.1| ribonucleotide reductase subunit alpha [Lactobacillus casei str.
           Zhang]
 gi|300438925|gb|ADK18691.1| Ribonucleotide reductase, alpha subunit [Lactobacillus casei str.
           Zhang]
          Length = 723

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 160/711 (22%), Positives = 283/711 (39%), Gaps = 74/711 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +       +   L  +     ++                L  L   L  + 
Sbjct: 34  KEALQAFLTENVAPNTMQFDSL-ADRLKYLVDNHYYEADFLNKYQPAFLEKLDQFLSAQH 92

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y +Y L  +     + + F  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDGTQYL-EDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENYE 526
             D++ R   ++    +PD +   +  NA   LFSP  V     +YGK F      + Y+
Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVYGKPFSYVDITKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  IK ++ I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 329 NMVANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385

Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI         N+  E   +    S NL +    N         ++   VR L  V D  
Sbjct: 386 EIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHS 445

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS
Sbjct: 446 NIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLKAS 505

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751
            ++AQER  ++ +F+ S +  G +              +VR     ++  ++  W+ LK 
Sbjct: 506 NKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKI 565

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N MA+AP  +I+ I   S S+ P    +  +     G        L N+ 
Sbjct: 566 SVMKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAPDLSND- 624

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A++ID   +I+  +  Q+ +DQ 
Sbjct: 625 ------------------------------TMPYYQSAYDIDMRKVIDVYAAAQQHVDQG 654

Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            ++ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705


>gi|224475872|ref|YP_002633478.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420479|emb|CAL27293.1| ribonuceloside diphosphate reductase alpha chain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 698

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 163/707 (23%), Positives = 290/707 (41%), Gaps = 66/707 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +      LE++ ++       + ++  +      Y + F +Y EE +K        + F
Sbjct: 29  DQEALAVYLEEI-KDHTIYFDSEIERLHYLVDNDFYVDVFAQYSEEDLKELTDFARSIPF 87

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +    +   + Y  H               V +         +
Sbjct: 88  KFASYMSASKFFKDYALKTNDKKQYLEDYSQH---------------VTIVSLYLADGDK 132

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           ++A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 133 EQARQFISSMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 252

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F +       + +F+P  V + + +  
Sbjct: 253 HYDVEEFLDTKKVNADEDIRLSTISTGLIVPAKFFELAKNGEDFYMFAPHTVYNEYGVTL 312

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            +     + Y+       I   +K  A  +   +     ++G+P++ FKD  N      +
Sbjct: 313 DD-IDLDKYYDDMVKNPNILKHKK-DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSN 370

Query: 576 VGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628
           +G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ T 
Sbjct: 371 IGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHTG 430

Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D  N       +K+N    ++GLG+M     L    I Y S EA + A+   
Sbjct: 431 MDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNQIGYESEEAKDFANIFF 490

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNR 740
             +++++I  S++ A+ER  AY  F  S +  G +       D +    +V+     +  
Sbjct: 491 MTMNYYSIERSMQTAKERGQAYQDFDKSDYASGKYFEKYTQADIVPEYEKVKSLFEGLEI 550

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W  L+K VK  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 551 PTAEDWKTLEKDVKEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNSETF 610

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F    L  + +W                            + +AF  D M LI+  
Sbjct: 611 YPMPF----LSPQTMW---------------------------YYKSAFNTDQMRLIDLV 639

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +  Q+ +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 640 ATIQQHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686


>gi|197294206|ref|YP_001798747.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853533|emb|CAM11391.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 856

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 138/669 (20%), Positives = 265/669 (39%), Gaps = 54/669 (8%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQA 319
                        +  +  +      ++     ++G    Y+ Y L     +   E  + 
Sbjct: 218 NEYYETDFLSQYNEQQIKDIYKIAYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYED 277

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPD 378
              R+ +          + A      L +  F  +TPTL N+G +H  +  SCFL    D
Sbjct: 278 ---RLCVNALYHAQGDFEIAKRLIKSLINQDFTPATPTLLNAGKKHRGEFVSCFLLEAGD 334

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I    + +  L+K  GG+  + T +R  G  I G  G  +GV+   K+ + +    
Sbjct: 335 SLNDIARINEFSMQLSKIGGGVSINITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYA 394

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +Q G+R GA   YL  +H D+E+FL  +K   D+  R   ++    +P+  ++   +N  
Sbjct: 395 DQMGQRTGAGAVYLSVFHADIEDFLSTKKLNADEDVRVKTLSLGVIVPNKMIELARKNEV 454

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETG 557
              F P  V   ++           +Y         KV +K I    L   +  M  E+G
Sbjct: 455 MYTFYPHTVFLEYEKN-FADIAVNMDYWYDILVSNPKVRKKAIQPRQLLELIARMQGESG 513

Query: 558 HPWITFKDPCNIRSPQQ-------HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           +P++ F D  N  +              +    + +  T  + ++E  +    S NL + 
Sbjct: 514 YPYLMFCDNVNQNNTSHLQVKFSNLCTEILQPTITSHYTDYNHTQEDKIGMDVSCNLASG 573

Query: 611 FANNQFDYDKLASTIRTAVRVLDN-VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             +N  + + +  T+  A+ V++   +  N + +    K+N  +R++G G+MG    L  
Sbjct: 574 HMSNMINNNTIKETVFMAMEVMNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQ 633

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
            +I + S E  ++ D     I+++++  S + A++    +  F+ S +  G +      +
Sbjct: 634 NYIAFGSEENKDLIDVFFNAINYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEI 693

Query: 729 LAE----VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           L +     +    +   S   W +LKK V+  G+ NS+ +A+AP  TI  I G + S+ P
Sbjct: 694 LPKTDKIKKMFANIPLPSEKDWQQLKKDVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTP 753

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             Q +  ++  +         L                                 +   +
Sbjct: 754 IKQLVEERTYGNSKTYCPMPGLK--------------------------------ETSFM 781

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
           + TA++++   LI+  +  QK +DQ  S  L +  + + ++L   Y  A   G+KT YY 
Sbjct: 782 YVTAYKMNKYQLIDVIATAQKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYT 841

Query: 904 RSRSATSVE 912
           R++     E
Sbjct: 842 RTQKLKVDE 850


>gi|191638465|ref|YP_001987631.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei BL23]
 gi|190712767|emb|CAQ66773.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus
           casei BL23]
 gi|327382497|gb|AEA53973.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei LC2W]
 gi|327385695|gb|AEA57169.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           casei BD-II]
          Length = 723

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 160/711 (22%), Positives = 283/711 (39%), Gaps = 74/711 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L     +       +   L  +     ++                L  L   L  + 
Sbjct: 34  KEALQAFLTENVAPNTMQFDSL-ADRLKYLVDNHYYEADFLNKYQPAFLEKLDQFLSAQH 92

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y +Y L  +     + + F  RV           E  AV+  + +   
Sbjct: 93  FQFKSFMAAYKYYAQYALKTDDGTQYL-EDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  + DD+  I  A+     L++  GG+G   + +R
Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENYE 526
             D++ R   ++    +PD +   +  NA   LFSP  V     +YGK F      + Y+
Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVYGKPFSYVDITKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                  IK ++ I A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC+
Sbjct: 329 NMVANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385

Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638
           EI         N+  E   +    S NL +    N         ++   VR L  V D  
Sbjct: 386 EIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHS 445

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +   +  NH   +IGLG MG  +     H+ Y SPE+++  +     ++++ + AS
Sbjct: 446 NIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLRAS 505

Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751
            ++AQER  ++ +F+ S +  G +              +VR     ++  ++  W+ LK 
Sbjct: 506 NKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKT 565

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810
            V   G+ + N MA+AP  +I+ I   S S+ P    +  +     G        L N+ 
Sbjct: 566 SVMKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAPDLSND- 624

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                             + +A++ID   +I+  +  Q+ +DQ 
Sbjct: 625 ------------------------------TMPYYQSAYDIDMRKVIDVYAAAQQHVDQG 654

Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905
            ++ L++                   + + L+ +   A   G+K+ YY+R+
Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705


>gi|269202351|ref|YP_003281620.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ED98]
 gi|262074641|gb|ACY10614.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ED98]
          Length = 701

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 44  KDKTILFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 103

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 209 ARGEAIKGIKGIAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689


>gi|71403769|ref|XP_804651.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70867734|gb|EAN82800.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 236

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 17/249 (6%)

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y+ F GS   QG+   D               R+ R  WD LKKR+   GMRNS  +A
Sbjct: 2   GPYARFAGSPASQGLLHFDLWEQKP---------RSGRWYWDALKKRMMKSGMRNSLLLA 52

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
             PTA+ + I G ++  +P   N+YV+  +SG+F VVN +LV +L +R LW+E M + + 
Sbjct: 53  PMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQII 112

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885
            ++GS+ NI  IP+DLK+++   +EI    LIE A  R K+IDQ+QSLNL+L+ P+  +L
Sbjct: 113 AYNGSVQNIRGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQL 172

Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
             ++  AW  GLKT  YYLRS+ A    K T+     K                 + S+ 
Sbjct: 173 TSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTLK-------GLVKEDDRKQVSSAT 225

Query: 945 TSDTECEVC 953
            S+ +C  C
Sbjct: 226 PSNEDCLNC 234


>gi|294338105|emb|CBJ93943.1| Probable phage ribonucleotide-diphosphate reductase alpha subunit
           [Campylobacter phage CP220]
          Length = 898

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 151/648 (23%), Positives = 270/648 (41%), Gaps = 51/648 (7%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + I+ ++G    F+++++   +  AC  L DV    ++ +    ++DG    D++ +L
Sbjct: 4   DTIHIVKNNGEREIFDAEKIHKHLHFACQNL-DVDIISIIKDARLKIFDGAKSVDIQDSL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S++  I ++ P+Y  V  R L +KLR+EV         K+   E            I+
Sbjct: 63  IKSAQEKISEDSPDYELVAGRLLNQKLRKEVYKQYTPLDFKSQVKER-----------IK 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
           +G     L+    D +L Y  + + YE D    Y  L  +Y +Y +  N   IE+PQ  F
Sbjct: 112 KGFYTEDLNA-YSDEELDYFGSLINYELDNELPYSALNQMYSKYLIKHNKKCIEVPQEVF 170

Query: 322 MRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + + M +        ++K     Y LLS       TP +  + T + +  SC L    D 
Sbjct: 171 ILIPMAIFYNTDIEYRKKYVKLGYELLSQRKISLPTPIMNGARTSYKKFISCNLLNFGDS 230

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG-KSQGVIPFLKVANDTAVAV 438
           +      L+          GLG + + +RGLGA +   +     G++P +K       A+
Sbjct: 231 VESFARGLEAVLKCTSAKSGLGINTSFIRGLGAPVGKPSRLDHTGMLPIVKAIESATSAL 290

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            Q G+  GA    +  +H ++E F  L  + G    R    +    I   F+++      
Sbjct: 291 VQHGRG-GASNLSMPFFHYEIELFSQLGDSKGSLENRARHTDQTIIINKWFLEKALNKED 349

Query: 499 WTLFSPDEVSDLHDL--------YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             LF  + V +              K F+  Y++Y  +      K  +KI++  L   ++
Sbjct: 350 IFLFHMNAVGNKDPKLDLYDALGDYKRFDELYKHYSAKVPN---KSKKKINSYDLLSLII 406

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602
                TG  +I F D     S ++++   + +NLC EI++ S           E   C L
Sbjct: 407 NERMITGRVYIVFADNFVNSSFKENL---YMTNLCCEISVPSHSLDNYRGIPGELGTCIL 463

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           G+IN              +       VR LDN+IDI+   + + + S    R +G+G+  
Sbjct: 464 GNINFGHSKE------SDIPKVADFLVRFLDNMIDISDFAMPEIEYSATKRRTLGIGVSN 517

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L    + Y + EA E  ++ ME   F+ +  S++LA+ERGA   +  S +    F 
Sbjct: 518 LFGYLAKSKLFYNTKEAREHINDLMELFYFNLVKTSIDLAKERGACELYNESFYSDNKFI 577

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            +       +   +     ++L W+ L++ +   GMR+S+  A+ P  
Sbjct: 578 FERY-----LEAGIKPEFKTKLDWESLREELSKYGMRHSSLSAVPPAG 620



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 41/143 (28%)

Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            +     +  I+P  + + +K+  S     +  F                          
Sbjct: 768 SSKPSSATPGIEPPRELVTIKTEKSSTVKQLVPFYKTA---------------------- 805

Query: 832 GNIERIPDDLKKIHATAF--EIDPMWLIESASRRQKWIDQAQSLNLYLD-----EPSGKK 884
                     KK + TA+  + +    ++  S  Q+++DQ+ S N Y +     + + + 
Sbjct: 806 ----------KKYYTTAWGVDFNNKDYLKLVSTIQRYVDQSISTNQYYNIVETKKVNIED 855

Query: 885 LDFIYRQAWLMGLKTTYY--LRS 905
           +   + + + +G+K+ YY   R+
Sbjct: 856 VIEEFIECFNLGVKSLYYANFRT 878


>gi|89901782|ref|YP_524253.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
 gi|89346519|gb|ABD70722.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens
           T118]
          Length = 589

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 145/622 (23%), Positives = 243/622 (39%), Gaps = 66/622 (10%)

Query: 299 QILYDRYFLHINGSRIEMPQA-FFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTP 356
            +   RY     GS  E      + RVA+ ++  E   +      F  +LS + F+    
Sbjct: 13  HVWRTRYLWAEPGSVPEPAIENTWARVALAVSGAEPHHQNDWRERFLAMLSDWRFLPGGR 72

Query: 357 TLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            L  +GT     L +C     + D + GIF AL+E     +  G +G D++ +R   A  
Sbjct: 73  ILAGAGTSRRVTLFNCLAMGPIEDSVQGIFNALREAMQCLQAGGAIGIDFSTLRPALALA 132

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
             +   + G + F+ V       +  G +R+ A+ A L   H D+E F+D + +TG    
Sbjct: 133 QSSGAVASGPVSFMNVWQAANAVLEAGNRRRSAMLATLRCDHPDIEAFIDAKLDTGA--- 189

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADR 531
                  +  + D FM+ + ++  W L  P     +    ++  + +             
Sbjct: 190 -LSHFKLSVLLNDEFMQALQEDGPWPLVFPLGEHPIPVGGEVCERVWSDGGPPQLCM--- 245

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
               V R++ A ALW K+L     +G P + F D  N  +   +   +  +N    + L 
Sbjct: 246 ----VHRRVPARALWEKLLQAQHASGEPGVLFIDRINRANNLWYDEHLTVANPDGGVPLP 301

Query: 592 SSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   CNLGSINL              D   L +    A R LD+V DI+   ++  
Sbjct: 302 P----WGACNLGSINLSRFVQQPFAAHPSVDLGGLRAVAAVATRFLDDVYDISLFPLKAQ 357

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           +KS    R IGLG+ G    L +L + Y S  ++++  E M  I   A   SVELAQE+G
Sbjct: 358 QKSALASRRIGLGVTGLADMLAMLGLRYGSAASIDLTREIMGAIRDTAYRTSVELAQEKG 417

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           A+ +     +  G  P             L ++R        L+  +   G+RNS+ +A+
Sbjct: 418 AFPACDKLKY--GASPF-----------VLELDRA-------LQDAIAQHGIRNSHLLAV 457

Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           APT +I+ +    S  I+P      ++     +   V  F V +   R            
Sbjct: 458 APTESISLLANNVSNGIEPMRAFQAMRRVRGAEGQAVF-FDVEDAACRQY---------- 506

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                   +        K    A ++     ++  +  Q  +D A S  +YL    S + 
Sbjct: 507 ------QALHGPDAPWPKHFVQAADVSAEDQLQLMAAVQSHVDNALSKTVYLPASASVQD 560

Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906
           +  + +QAW +GLK     R  
Sbjct: 561 VGLVLQQAWELGLKGCSVERQG 582


>gi|163784573|ref|ZP_02179422.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880159|gb|EDP73814.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 592

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 158/445 (35%), Positives = 239/445 (53%), Gaps = 26/445 (5%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202
           ++  DGT   F  K+L   +     G+       +  +  K +     + ++  +L+  +
Sbjct: 5   VVKRDGTEEKFQMKKLINAIFALFEGMDLPDDWEIAFKIAKELDLKIPERVTTEELDFLV 64

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           + +   LI     Y  + +R L + + R++                     + F   +E 
Sbjct: 65  LKAIEQLIPTHYIYDTLASRQLQKIINRKIDKRF-----------------KSFKEALEY 107

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321
           GVK  L  E +++FDL  + N + YERD   +Y G+  L DRYF    NG  IE PQ FF
Sbjct: 108 GVKEGLYKEDILNFDLEKIENAIDYERDNLLDYFGMTTLKDRYFTKDRNGEIIEKPQWFF 167

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVA+G+   E E     ++ YN +S   ++ STPTL+NSGT   Q SSC++  + D L 
Sbjct: 168 MRVALGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVNVIDDSLE 223

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I    +E A LAKY+GG+G D T +R  G+ I   N KS GVIPF+K+ +    A+ QG
Sbjct: 224 SIMDKAKETAFLAKYAGGVGTDVTRIRATGSAIKSLNAKSSGVIPFIKIFDTIVNAIQQG 283

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G+R+ +   YL+ WH+D++ FLDLR+ TG+   RT  +NTA W+PD  M+R+ +     L
Sbjct: 284 GRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAIWMPDEIMRRIKEGEPLYL 343

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P E  +L   +GK+F   Y     +A+ GEIK+++KI +   +R+ L  L +TGHPW+
Sbjct: 344 FDPAECPELVASWGKDFTEKYFECIEKAETGEIKLWKKIDSQEWFRRYLFKLAKTGHPWL 403

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCT 586
           TFKD  N  +P    GV++SSNLC 
Sbjct: 404 TFKDRHNEHNPCPEYGVINSSNLCV 428


>gi|304381651|ref|ZP_07364300.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304339754|gb|EFM05699.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 701

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 161/695 (23%), Positives = 285/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y      Y E  +     +   + F+     +  K+ +
Sbjct: 44  KDKTIFFDTEIERLRYLVDNDFYFNVLDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 103

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF  D M LI+  +  Q  IDQ  S
Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689


>gi|306833074|ref|ZP_07466205.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           bovis ATCC 700338]
 gi|304424783|gb|EFM27918.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           bovis ATCC 700338]
          Length = 719

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 152/714 (21%), Positives = 283/714 (39%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + +++  +++   DF +  +A DL+ + 
Sbjct: 32  KEALKAFFRENVIPYSMTFDTIIDKINYLIDNDYIESEFINKYTPDF-IETVAKDLQAQG 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    R+           E+ A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGKHYLESIED---RILFNALYFADGNEELARDLATEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +  SCFL +V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGV-PYSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +      I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 327 KMVANPNIVKTK-IRARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383

Query: 587 EITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E+    +                  CNLGS N++    +          +I+   R L  
Sbjct: 384 EVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  + L   HI Y SPE++E  +     +++ 
Sbjct: 439 VSDTSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYW 498

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746
            +  S  +A+ER   +  F+ S +  G +    I      + +            S   W
Sbjct: 499 TLVESNHIARERKQTFVGFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
            +L+  V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +     G        
Sbjct: 559 AKLRDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP--- 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                          +  D    + +A+++D   +I+  +   +
Sbjct: 616 ----------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|75758222|ref|ZP_00738347.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494276|gb|EAO57367.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 694

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 157/671 (23%), Positives = 285/671 (42%), Gaps = 53/671 (7%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
           +Y+ E      +     + ++  +       +     Y+     Y  Y L  +  +I + 
Sbjct: 49  KYLIEHNYYYNVFGEYTEEEVQRIYEAAYTHKFEFQSYMAATKFYKDYSLRSDDKKIYLE 108

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376
                R A+      +   K+A+ + N +   ++  +TPT  NSG     +L SCFL  +
Sbjct: 109 DYE-DRAAIVALYLASGNTKKALRYVNQIMKQNYQPATPTYLNSGKARAGELVSCFLLEM 167

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I   L     L+K  GG+  + + +RG    I G    + GV+P +K+  D+  
Sbjct: 168 DDSLNSINYNLSVAKQLSKIGGGIAINLSKLRGRTEAIKGIENAASGVLPVMKLMEDSFS 227

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            +NQ G+R GA  AYL  +H D+ EFLD +K   D++ R   ++     P  F +   QN
Sbjct: 228 YINQLGQRPGAGAAYLNIFHWDLIEFLDSKKVNADEKTRIQSLSIGLVTPRKFFQLAEQN 287

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
               LF+P  V   + ++  + ++  +  E  A+    K    ++A  +  K+ T+  E+
Sbjct: 288 KEMYLFAPATVYKAYGVHLDDMDLDEKYDELVANPMVRKRKLDLTAREMLVKIATIQLES 347

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG-------SINLLA 609
           G+P+   K   N + P + +G V  SNLCTEI     +      N+        S  L +
Sbjct: 348 GYPYFMNKTNANEQHPLKDLGGVKMSNLCTEIFQYMETSVINDYNIADWIKNDISCVLGS 407

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
               N  +   +   + T + +L +V D          KK+N T  ++GLG M     L 
Sbjct: 408 LNIVNVMENKDVKEAVHTGMEMLTDVTDKSCIENAPGVKKANATLHSVGLGTMNLHGFLA 467

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726
              IPY S +A + A      +++H+I  S E+A+ERG ++  F+ S + +G +    + 
Sbjct: 468 KNFIPYESEDAKDFARVFFAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLT 527

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                    + ++ + + +  T+   W+ L K+V+  G+ +S  +AIAP  +   +   +
Sbjct: 528 TEFLPQSEKVKKLFEGIQIPTTA--DWERLMKQVQRDGLYHSYRLAIAPNQSSGYVQNAT 585

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
            S+ P    +  +S           +    L ++  +                       
Sbjct: 586 PSVMPIVDKVETRSTDKATTYYPMPY----LSKQTFFS---------------------- 619

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
                + +A+E+D M +I+  +  Q  +DQ  S  L++    S + L   Y  A   GLK
Sbjct: 620 -----YKSAYEMDQMKVIDLIAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLK 674

Query: 899 TTYYLRSRSAT 909
           + YY R+ ++T
Sbjct: 675 SLYYTRTSNST 685


>gi|325977863|ref|YP_004287579.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177791|emb|CBZ47835.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 719

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 154/714 (21%), Positives = 283/714 (39%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +       + +++  + +   DF +  LA DL+ + 
Sbjct: 32  KEALRAFFRENVIPNSMAFDTIIDKINYLIDNDYIESEFISKYTPDF-IESLAKDLQAQG 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N  +   E  +    R+           E+ A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGKYYLESIKD---RILFNALYFADGNEELARDLATEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +  SCFL +V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGV-PYSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +      I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 327 KMVANPNIVKTK-IRARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383

Query: 587 EITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E+    +                  CNLGS N++    +          +I+   R L  
Sbjct: 384 EVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  + L   HI Y SPE++E  +     +++ 
Sbjct: 439 VSDTSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYW 498

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746
            +  S  +A+ER   + SF+ S +  G +    I      + +            S   W
Sbjct: 499 TLVESNHIARERKQTFVSFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
            +L+  V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +     G        
Sbjct: 559 AKLRDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP--- 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                          +  D    + +A+++D   +I+  +   +
Sbjct: 616 ----------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|196230496|ref|ZP_03129358.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chthoniobacter flavus Ellin428]
 gi|196225426|gb|EDY19934.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chthoniobacter flavus Ellin428]
          Length = 1043

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 132/652 (20%), Positives = 237/652 (36%), Gaps = 72/652 (11%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FYN  +             +   +PQ S+CF+ +V D++  I       AML KY  G G
Sbjct: 182 FYNHKTGQ------AQRAATQYEYPQGSACFIQSVDDNMEDIMRLAMSEAMLFKYGSGTG 235

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
           +D + +R     + G  G+  G + FLKV +  A  V  GGK R+ A    L+ WH D+E
Sbjct: 236 SDLSTLRSTREKLSG-GGRPSGPLSFLKVYDQVANVVKSGGKTRRAAKMNTLKDWHPDIE 294

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           EF++ +           +         D +   + QN   ++   DE  +      + + 
Sbjct: 295 EFIEAKTKEEKKAWALIEQGYDGSYNGDAYGSIMYQNENLSVRVSDEFMNAAVEGKEWWT 354

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                        + K   K  A AL RK+       G P + F    +     +  G  
Sbjct: 355 KR---------VTDGKPCEKKEAKALLRKIAEGTHLCGDPGVQFDTTIDKWHTCKGTGRQ 405

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDI 638
           +S+N C+E        +   CNL S+NLL     +  FD ++  + +R  +   + ++D 
Sbjct: 406 NSTNPCSEYLF----LDNTACNLASLNLLKFKKADGGFDVERFKAAVRVFITAQEIIVDN 461

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             + I++  +++H  R +GLG     + +    + Y + E   +A      ++ HA   S
Sbjct: 462 ASYPIKEIAENSHIFRTLGLGYANLGALIMSYGLGYDTDEGRALAGAITSIMTGHAYEQS 521

Query: 699 VELAQERGAYSSFKGSLWDQGVFPID------SIGLLAEVRDEL----------AMNRTS 742
            +LA+  G +  +K +        +D       + ++   R  +           +   +
Sbjct: 522 AKLAKTMGPFPGYKDTRASGVKKTVDSTNESYMLEVIDLHRSHVSRIQDSDRFGYLKEEA 581

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
           +  WD    + K  G RN+    +APT TI  +    +  I+P    + Y      G   
Sbjct: 582 QKCWDGALAQGKKHGYRNAQVTVLAPTGTIGFLMDCDTTGIEPDIALVKYKLLAGGGMLK 641

Query: 801 VVNSFLVNELKQRDLWDEAM------------ISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +VN  +   L+        +            I D+   DG+      +  +   +   A
Sbjct: 642 IVNQTVKPALQNLGYSFAEIEGVVAHIDKFDTIEDVTDEDGTTIP-SGLKPEHLPVFDCA 700

Query: 849 F-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTT 900
           F        +     I   +  Q ++  A S  + L  E + + +   Y + W +GLK  
Sbjct: 701 FKPHRGSRSLHYRGHIRMMAAAQPFLSGAISKTVNLPEEATVEDIVNTYVEGWQLGLKAI 760

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
              R  S  S            LN     D  ++     + +        E 
Sbjct: 761 AIYRDGSKRSA----------PLNVKKTKDMGTAEAVSDVDAVLNDKRTLEA 802


>gi|289551412|ref|YP_003472316.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|315658920|ref|ZP_07911787.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis
           M23590]
 gi|289180943|gb|ADC88188.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|315496044|gb|EFU84372.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis
           M23590]
          Length = 701

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 166/705 (23%), Positives = 290/705 (41%), Gaps = 63/705 (8%)

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLH------ESMMDFDLVY 280
           R+E      +K Q+A    ++ ++ +  YF   IE               +   + DL  
Sbjct: 21  RKESGFFNLEKDQEALKVYLEEIHDKTIYFDDEIERLHYLVDHDFYFNVFDKYSEIDLRE 80

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKR 338
           + +  K        Y+     Y  Y L  N     +E        VA+ LA      + +
Sbjct: 81  ITDFAKSIEFNFASYMSASKFYKDYALKTNDKSQYLEDYNQHVTIVALYLA---NGNKAQ 137

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K  
Sbjct: 138 AKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIG 197

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H 
Sbjct: 198 GGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFHY 257

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +   +
Sbjct: 258 DVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDD 317

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            ++     +  A+   IK  +   A  +   +     ++G+P++ FKD  N      ++G
Sbjct: 318 IDLEQYYDDMVANPNIIKKKK--DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSNIG 375

Query: 578 VVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630
            +  SNLCTEI         N    +  +    S NL +    N  +  K   ++ T + 
Sbjct: 376 QIKMSNLCTEIFQLQETSIINDYGIDDEIKRDISCNLGSLNIVNVMETGKFRDSVFTGMD 435

Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            L  V D  N       +K+N    ++GLG+M          I Y S EA + A+     
Sbjct: 436 ALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYFAKNKIGYESEEAKDFANVFFMM 495

Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTS 742
           ++++++  S+++A+ERG  Y  F+ S +  G +       D     A+V+     +   +
Sbjct: 496 MNYYSLERSMQIAKERGQVYQDFEQSDYANGKYFSFYTAQDITPRFAKVQQLFEGIEIPT 555

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
              W  L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +    
Sbjct: 556 AEDWKALQQQVEAHGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             FL                                 +    + +AF  D M LI+  + 
Sbjct: 616 MPFL-------------------------------SPETMWYYKSAFNTDQMKLIDLIAT 644

Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 645 IQTHIDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 689


>gi|323227179|gb|EGA11353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
          Length = 674

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 168/668 (25%), Positives = 276/668 (41%), Gaps = 72/668 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     + EG     +        ++ L             +LG    Y  Y L   +G
Sbjct: 51  HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N G +   +L 
Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K
Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP +V      YGK F     +        +  V +  I+A   ++ 
Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G ++ SNLC+EI               +    
Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N    A
Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714
           IGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S
Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 517

Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+
Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577

Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++    +G       F+ N                 
Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                         +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + 
Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666

Query: 885 LDFIYRQA 892
           ++     A
Sbjct: 667 INKAQIYA 674


>gi|314936970|ref|ZP_07844317.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655589|gb|EFS19334.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 713

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 164/701 (23%), Positives = 284/701 (40%), Gaps = 56/701 (7%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
              L ++         + +          E     ++      +  +   + DL+ +   
Sbjct: 38  FFNLEKDQEALNVYLEEISDKTIYFDSEIERLHYLVDNHFYFNVF-KKYSEEDLIEIIEF 96

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
            K        Y+     Y  Y L  N     +E        VA+ LA      +++A +F
Sbjct: 97  AKSINFEFASYMSASKFYKDYALKTNDKSKYLEDYNQHVAIVALYLA---DGNKEQAKQF 153

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
              +    +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+ 
Sbjct: 154 ILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVA 213

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEE
Sbjct: 214 INLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEE 273

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +   + +I 
Sbjct: 274 FLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDDIDIE 333

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  A+   +K  +   A  +   +     ++G+P++ FKD  N      ++G +  
Sbjct: 334 KYYDELVANPNVLKKKK--DAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKM 391

Query: 582 SNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           SNLCTEI         N    E  +    S NL +    N  +  K   ++ T +  L  
Sbjct: 392 SNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMETGKFRDSVHTGMDALTV 451

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  N       KK+N+   ++GLG+M     L    I Y S EA + A+     ++++
Sbjct: 452 VSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYY 511

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPW 746
           +I  S+E+A+ER  AY  F  S +  G +       + +    +V++    M   +   W
Sbjct: 512 SIERSMEIAKERGEAYQDFDKSDYASGKYFDFYTSQEFVPQFEKVKELFANMQIPTSEDW 571

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      FL
Sbjct: 572 KSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL 631

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                            +    + +AF  D M LI+  S  Q  
Sbjct: 632 -------------------------------SPETMWYYKSAFNTDQMKLIDLISTIQTH 660

Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 661 VDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 701


>gi|330683859|gb|EGG95633.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           epidermidis VCU121]
          Length = 701

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 161/708 (22%), Positives = 283/708 (39%), Gaps = 68/708 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + +     + ++  +      Y   F +Y +  +     +   ++F
Sbjct: 32  DQEALKVYLEEIHDKTI-YFDSEIERLHYLVDNNFYFNVFAKYSDSDLVEITEYAKSINF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +    Q   + Y  H               VA+         +
Sbjct: 91  QFASYMSASKFYKDYALKTNDKQQYLEDYNQH---------------VAIVSMYLANGDK 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
            +A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 DQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFE-IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            + +   Y +        E K      A  +   +     ++G+P++ FKD  N      
Sbjct: 316 DDIDLEKYYDDMVANPNVEKKKK---DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANS 372

Query: 575 HVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
            +G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ T
Sbjct: 373 DIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESQKFRDSVHT 432

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+  
Sbjct: 433 GMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIF 492

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMNR 740
              +++++I  S+++A+ER   Y  F  S +  G +       +      +VR+      
Sbjct: 493 FMMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEFYTSQEFEPQFEKVRELFKGFE 552

Query: 741 T-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + + 
Sbjct: 553 IPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAET 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                FL                                 +    + +AF  D M LI+ 
Sbjct: 613 FYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLIDL 641

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 642 VSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|228475303|ref|ZP_04060027.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis SK119]
 gi|228270679|gb|EEK12093.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           hominis SK119]
          Length = 701

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 164/701 (23%), Positives = 284/701 (40%), Gaps = 56/701 (7%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
              L ++         + +          E     ++      +  +   + DL+ +   
Sbjct: 26  FFNLEKDQEALNVYLEEISDKTIYFDSEIERLHYLVDNHFYFNVF-KKYSEEDLIEIIEF 84

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
            K        Y+     Y  Y L  N     +E        VA+ LA      +++A +F
Sbjct: 85  AKSINFEFASYMSASKFYKDYALKTNDKSKYLEDYNQHVAIVALYLA---DGNKEQAKQF 141

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
              +    +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+ 
Sbjct: 142 ILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVA 201

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEE
Sbjct: 202 INLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEE 261

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +   + +I 
Sbjct: 262 FLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDDIDIE 321

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  A+   +K  +   A  +   +     ++G+P++ FKD  N      ++G +  
Sbjct: 322 KYYDELVANPNVLKKKK--DAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKM 379

Query: 582 SNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           SNLCTEI         N    E  +    S NL +    N  +  K   ++ T +  L  
Sbjct: 380 SNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMETGKFRDSVHTGMDALTV 439

Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  N       KK+N+   ++GLG+M     L    I Y S EA + A+     ++++
Sbjct: 440 VSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYY 499

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPW 746
           +I  S+E+A+ER  AY  F  S +  G +       + +    +V++    M   +   W
Sbjct: 500 SIERSMEIAKERGEAYQDFDKSDYASGKYFDFYKSQEFVPQFEKVKELFANMQIPTSEDW 559

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806
             L+++V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      FL
Sbjct: 560 KSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL 619

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                                            +    + +AF  D M LI+  S  Q  
Sbjct: 620 -------------------------------SPETMWYYKSAFNTDQMKLIDLISTIQTH 648

Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 649 VDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|149375056|ref|ZP_01892829.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
 gi|149360945|gb|EDM49396.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola
           DG893]
          Length = 699

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/648 (19%), Positives = 255/648 (39%), Gaps = 58/648 (8%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMC 353
           +     L  +    ++       +A + RVA  LA  E      +  + +        + 
Sbjct: 9   WNSKYQLKTKTGEPVDKDI----EATYERVATALAEVENKANRAKHKKEFVWALRHGAIP 64

Query: 354 STPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +     N+G    +      +C ++ +V D +  I     E  +  K   G+G +++ +R
Sbjct: 65  AGRITSNAGAEAHKPATSTINCTVSGSVQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLR 124

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV +F+  ++ 
Sbjct: 125 PRGAYVAGAGATTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDVHHPDVIDFIQAKR- 183

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDLYGKEF 518
              +  R    N +  I + F++ V     W L  P           ++SD      ++F
Sbjct: 184 ---EDGRLRQFNLSLLITEDFIEAVRNGDDWHLSFPVTEKEVEDEGLDLSDTTQFVYRDF 240

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            I          +   +++R + A  +W  ++T  ++   P     D  N  +       
Sbjct: 241 PIQKGYVVNGEGKVACRIYRTLKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCED 300

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLD 633
           + ++N C E  L         C LGS+NL         D     Y+K    +    R+LD
Sbjct: 301 IRATNPCGEQPLPPY----GSCLLGSVNLTMFVDYPFTDKASFNYEKYRKVVGIFTRMLD 356

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NV++IN   +E+ +      R  G+G++G  S L +L +PY S E+V+  +E +  ++  
Sbjct: 357 NVVEINGLPLEEQRHEITYKRRHGMGILGLGSTLAMLRMPYGSSESVQFTEEVVREMAVE 416

Query: 694 AISASVELAQERGAYSSFKG----SLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPW 746
               S+ LA+E+G           +       P    D   L  +++ ++   + S+   
Sbjct: 417 GWRQSLALAEEKGPAPIMDDEFEVTPKMLTKCPQLSQDGYKLGDKLKGKVLHAKYSKYMQ 476

Query: 747 ------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGD 798
                  EL +++   G R ++  +IAPT TI+       S  I+PS+ + Y ++ +   
Sbjct: 477 QIAGVEPELIEQLAEKGGRFTHHTSIAPTGTISLSLANNASNGIEPSFSHHYARNII--- 533

Query: 799 FTVVNSFLVNELKQRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
                       ++ D++   ++      + G++   E     L +   T+ ++ P   +
Sbjct: 534 -----REGRKTKEKVDVFSFELLAYRHLVNPGAMPFSEEEDKRLPQYFTTSEDVTPAQHV 588

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           +  +  Q W+D + S    +  + +      IY  A+  GLK     R
Sbjct: 589 DIQAAAQLWVDSSISKTANVPQDFAYPDFKDIYMYAYDKGLKGCTTFR 636


>gi|227431270|ref|ZP_03913324.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227353032|gb|EEJ43204.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 723

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 164/765 (21%), Positives = 287/765 (37%), Gaps = 123/765 (16%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
                    P       +Q      F    +     R   +      +  L   L  E  
Sbjct: 38  NAFLDENVLPNVMHFDSLQERLDWMF----DHRFLEREFIQKYNLTFIEKLYTYLAGEHF 93

Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++     Y++Y L  N     IE  +    RVAM         E  A+   + +  
Sbjct: 94  KFKSFMAAFKFYNQYALKTNDGAYYIETYED---RVAMNALYYADGNENLALRLADEMIH 150

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + V
Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNV 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G +  + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPVMGIDNAAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F   V QN    LFSPD+V  ++      +      Y+ 
Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQ-PFNYVDITAEYDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I+  R I A +L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+E
Sbjct: 330 MVANDKIRKQR-IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSE 386

Query: 588 ------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
                           +       CNLGSIN++        + +    ++ T VR L  V
Sbjct: 387 ILQVQTPSEIDNEQHYTKLGSDISCNLGSINIVN-----MMNTNDFGGSVDTMVRALTFV 441

Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            D +    +      N    AIGLG MG  +      + Y   E+++        +++++
Sbjct: 442 SDSSNLDVVPSIDLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTSTFFMMLNYYS 501

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           I +S+ +A+E    +  F  S +  G +    +          +A+      +   +   
Sbjct: 502 IKSSMGIAKERHETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVP--TEQD 559

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W +LK+ V   GM N+   AIAPT +I+ +   + S+ P    +  +   M G       
Sbjct: 560 WAQLKEDVAKYGMYNAYRHAIAPTGSISYVNDATASLLPIVNKIEERQEGMIGKVYYPAP 619

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                     L +E M                        + +A++ D   +I+  +  Q
Sbjct: 620 ---------GLSNETM----------------------PYYVSAYDTDMRRVIDVYAAAQ 648

Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + IDQ  +L L++                ++ + + L  +   A+  G+K+ YY+R+   
Sbjct: 649 EHIDQGMALTLFMRSTLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT--- 705

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                 T    +  +N                        ECE C
Sbjct: 706 -----FTDDNQESGVN------------------------ECESC 721


>gi|83647576|ref|YP_436011.1| ribonucleotide reductase subunit alpha [Hahella chejuensis KCTC
           2396]
 gi|83635619|gb|ABC31586.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC
           2396]
          Length = 712

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 121/622 (19%), Positives = 247/622 (39%), Gaps = 54/622 (8%)

Query: 321 FMRVAMGLALKETEKEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT- 374
           + RVA  L+  E +  +  V   +        + +   + N+G    +      +C ++ 
Sbjct: 44  YERVAKALSSVEADSIREKVLADFVWALENGAIPAGRIMSNAGAEEHKPATSTINCTVSG 103

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           ++ D +  I     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 104 SIMDSMDDILLKNHEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDKM 163

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+  ++    +  R    N +  I + F+K V 
Sbjct: 164 CFTVSSAGGRRGAQMATFDVHHPDVFDFVRAKR----EDGRLRQFNLSLLITEDFIKAVQ 219

Query: 495 QNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
            +  W    P           +V+D      ++F +       ++ R   +++R + A +
Sbjct: 220 NDEDWRFSFPITRKEAEEDNIDVNDETQYLYRDFPVKDGYMTDESGRVVCRIYRTVKARS 279

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W  ++T  ++   P     D  N  +       + ++N C E  L         C LGS
Sbjct: 280 IWDAIMTSTYDFAEPGFILIDKVNEMNNNWFCENIRATNPCGEQPLPPY----GSCLLGS 335

Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL             F++DK    +    R+LDNV++IN   +E  +      R  G+G
Sbjct: 336 VNLTKFVEYPFTENAKFNFDKYRKVVAIFTRMLDNVVEINGLPLEGQRHEIQYKRRHGMG 395

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-- 717
           ++G  S L +L +PY S E+V   +E    ++       +ELA+E+G     + +     
Sbjct: 396 ILGLGSTLAMLRMPYGSDESVSFTEEVCREMALEGWRQGLELAKEKGPAPIMEDTFIVTE 455

Query: 718 -----QGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAI 766
                +     D +    +++ ++   + SR          +L   +   G R ++  +I
Sbjct: 456 EMLRLRPEMAKDGLKAGDKLKGKVLHAKYSRYMQRVAEADPKLVDALAKKGARFTHHTSI 515

Query: 767 APTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           APT TI+       S  I+PS+ + Y ++ +               ++ D++   +++  
Sbjct: 516 APTGTISLSLANNASNGIEPSFAHHYSRNVI--------RQGKKTKEKMDVFSYELLAYR 567

Query: 825 KYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
              +          +  L     T+ ++ P   ++  +  Q W+D + S    +  +   
Sbjct: 568 HLVNPKAMPFSEDAEAQLPAYFTTSDDVTPKQHVDIQAAAQLWVDSSISKTANVPTDFPY 627

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
            +   IY  A+  GLK     R
Sbjct: 628 GEFKDIYMYAYEKGLKGCTTFR 649


>gi|116617383|ref|YP_817754.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096230|gb|ABJ61381.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 723

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 164/760 (21%), Positives = 285/760 (37%), Gaps = 113/760 (14%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
                    P       +Q      F    +     R   +      +  L   L  E  
Sbjct: 38  NAFLDENVLPNVMHFDSLQERLDWMF----DHRFLEREFIQKYNITFIEKLYTYLAGEHF 93

Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++     Y++Y L  N     IE  +    RVAM         E  A+   + +  
Sbjct: 94  KFKSFMAAFKFYNQYALKTNDGAYYIETYED---RVAMNALYYADGNENLALRLADEMIH 150

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + V
Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNV 210

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA + G +  + GV+P +K+  D+    +Q G R+GA   YL  +H D+  FL  +K
Sbjct: 211 REAGAPVMGIDNAAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKK 270

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D++ R   ++    +PD F   V QN    LFSPD+V  ++      +      Y+ 
Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQ-PFNYVDITAEYDN 329

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                +I+  R I A +L  ++  +  E+G+P+I   D  N  +P    G + SSNLC+E
Sbjct: 330 MVANDKIRKQR-IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSE 386

Query: 588 ITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           I    +  E              S NL +    N  + +    ++ T VR L  V D + 
Sbjct: 387 ILQVQTPSEIDNEQHYTKLGSDISCNLGSINIVNMMNTNDFGGSVDTMVRALTFVSDSSN 446

Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +      N    AIGLG MG  +      + Y   EA++        +++++I +S+
Sbjct: 447 LDVVPSIDLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEEALDFTSTFFMMLNYYSIKSSM 506

Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELK 750
            +A+E    +  F  S +  G +    +          +A+      +   +   W +LK
Sbjct: 507 GIAKERHETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVP--TEQDWAQLK 564

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809
           + V   GM N+   AIAPT +I+ +   + S+ P    +  +   M G            
Sbjct: 565 EDVAKYGMYNAYRHAIAPTGSISYVNDATASLLPIVNKIEERQEGMIGKVYYPAP----- 619

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                L +E M                        + +A++ D   +I+  +  Q+ IDQ
Sbjct: 620 ----GLSNETM----------------------PYYVSAYDTDMRRVIDVYAAAQEHIDQ 653

Query: 870 AQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             +L L++                ++ + + L  +   A+  G+K+ YY+R+        
Sbjct: 654 GMALTLFMRSTLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT-------- 705

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T    +  +N                        ECE C
Sbjct: 706 FTDDNQESGVN------------------------ECESC 721


>gi|91791016|ref|YP_551967.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
 gi|91700896|gb|ABE47069.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666]
          Length = 784

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 150/702 (21%), Positives = 256/702 (36%), Gaps = 110/702 (15%)

Query: 286 KYERDFAFE-YLGLQILYDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFY 343
               D        LQ L     L    +  E   +    RVA  LA    + + +   F 
Sbjct: 1   MKTNDSNLSVPQALQQLCYDVLLEKYAAPGESSVREIQERVATSLA----DDKAQQARFV 56

Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDL--------YGIFGALQENAMLA 394
           +   +  F+        +G      + +CF+  V D +         GI  AL+E+A   
Sbjct: 57  S-AQAGGFVPGGRINSAAGMDRVSTMINCFVQPVGDSMSGSNQDGQPGIMDALRESAETM 115

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G D++ +R +GA + GT+ K+ G + +++V +     V   G R+GA    +  
Sbjct: 116 RRGGGVGYDFSSIRPVGARVKGTDSKASGPVSYMRVFDRMCQTVESAGARRGAQMGVMRV 175

Query: 455 WHIDVEEFLDLRKNTG---------------DDRRRTH--------------DMNTANWI 485
            H D+E F+D +K                  D  R+                + N +  +
Sbjct: 176 DHPDIEMFIDAKKTPDFSQMGLDKKDADGLLDLVRKNQGFGWSLRSAFATLSNFNISVAV 235

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-VFRKISAVA 544
            D FM  V  ++ + L    E  +                 +    G+ + V+R + A+ 
Sbjct: 236 TDEFMNAVVNDSDFDLVHDAEPVE-------------ACPTKVCTDGKARFVYRTVKAIE 282

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W K++   +    P + F D  N  +  ++  V+ ++N C E TL         C LGS
Sbjct: 283 IWTKIMRNTYYGAEPGVLFIDRINQDNNLRYCEVIKATNPCGEQTLPPY----GCCCLGS 338

Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
            NL    +N       FD+D L+  +  AV +LD V+D     + +        R IGLG
Sbjct: 339 PNLTRFVSNPFTLMASFDFDGLSKVVAKAVEMLDKVLDKTHWPLPQQASEAANKRRIGLG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
             G   A+ +L I Y S +  + A    E +   A  ASV LA+  GA+  F    +   
Sbjct: 399 HFGLADAMAMLGIRYDSQQGADFAAHVSEVLRDSAYMASVNLAKTLGAFPFFDAEKY--- 455

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-- 777
                           L     +    +++K  ++  G+RNS+ ++IAPT TI+   G  
Sbjct: 456 ----------------LEEGTFASRLPEKIKDAIRMYGIRNSHLLSIAPTGTISMAFGDN 499

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
            S  I+P +     +          N  + +  +Q    ++      K   G        
Sbjct: 500 ASSGIEPIFSLRQQR----------NKMMADGSRQIFELEDYAYRQFKLSKG-------- 541

Query: 838 PDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
            +D K  +  TA ++     +        +ID A S  + +  +   +    +Y  AW M
Sbjct: 542 -EDAKSDVFVTAMQMTVADHLRVLGAVAPYIDSAISKTVNVPADYPFEDFQQVYMDAWRM 600

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           GLK     R          +    D K       D       
Sbjct: 601 GLKGITTYRPNDMIGAVLVSADDADKKAAVATEQDLRQDDPD 642


>gi|239636655|ref|ZP_04677657.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           warneri L37603]
 gi|239598010|gb|EEQ80505.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           warneri L37603]
          Length = 701

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 161/708 (22%), Positives = 283/708 (39%), Gaps = 68/708 (9%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            +   +  LE++  + +     + ++  +      Y   F +Y +  +     +   ++F
Sbjct: 32  DQEALKVYLEEIHDKTI-YFDSEIERLHYLVDNNFYFNVFEKYSDSDLVEITEYAKSINF 90

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336
                 +  K+ +D+A +    Q   + Y  H               VA+         +
Sbjct: 91  QFASYMSASKFYKDYALKTNDKQQYLEDYNQH---------------VAIVSMYLANGDK 135

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395
            +A +F + +    +  +TPT  N+G     +L SCFL  V D L  I         L+K
Sbjct: 136 DQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+  + + +R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +
Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H DVEEFLD +K   D+  R   ++T   +P  F     +   + +F+P  V   + +  
Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315

Query: 516 KEFE-IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
            + +   Y +        E K      A  +   +     ++G+P++ FKD  N      
Sbjct: 316 DDIDLEKYYDDMVANPNVEKKKK---DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANS 372

Query: 575 HVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
            +G +  SNLCTEI         N    E  +    S NL +    N  +  K   ++ T
Sbjct: 373 DIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESQKFRDSVHT 432

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            +  L  V D  N       KK+N    ++GLG+M     L    I Y S EA + A+  
Sbjct: 433 GMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIF 492

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMNR 740
              +++++I  S+++A+ER   Y  F  S +  G +       +      +VR+      
Sbjct: 493 FMMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEFYTSQEFEPQFEKVRELFKGFE 552

Query: 741 T-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             +   W  L+K V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + + 
Sbjct: 553 IPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAET 612

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                FL                                 +    + +AF  D M LI+ 
Sbjct: 613 FYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLIDL 641

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            S  Q  +DQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 642 VSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|329575045|gb|EGG56597.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus
           faecalis TX1467]
          Length = 591

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 142/608 (23%), Positives = 249/608 (40%), Gaps = 66/608 (10%)

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGAL 387
                  E+ A+   + +    +  +TP+  N+   R  +L SCFL  V DD+  I  + 
Sbjct: 1   MYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSF 60

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
                L++  GG+G   + +R  GA I G +G + GV+P +K+  D+    NQ G+R+GA
Sbjct: 61  NSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGA 120

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
              YL  +H D+E FL  +K   D++ R   ++    +PD F +    N    LFSP  V
Sbjct: 121 GVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSV 180

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
              + +     +I  E     A+    K  RKI A  L  ++     E+G+P+I   D  
Sbjct: 181 EREYGVPYSYVDITKEYDNLVANPNIRK--RKIKARDLENEISKSQQESGYPYIINIDTA 238

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDK 620
           N  +P    G +  SNLC+EI            +E  V     S NL +    N  +   
Sbjct: 239 NKNNPI--DGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPD 296

Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
              ++R   R L  V D      +   +  N     IGLG MG  +     H+ Y S E+
Sbjct: 297 FGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEES 356

Query: 680 VEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE--- 735
           ++  D     +++  +  S ++A+ER   + + + S +  G +    I      + +   
Sbjct: 357 LDFTDIYFMLLNYWTLMESNQIAKERNQVFHNLEKSDYASGAYFDKYIEGNFTPKFDKVK 416

Query: 736 ---LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +   +   W  L+  VK  G+ + N +A+AP  +I+ I   S SI P  + +  +
Sbjct: 417 EIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEER 476

Query: 793 -SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
                G       +L N+                                   + +A+++
Sbjct: 477 QEKKIGKIYYPAPYLANDTI-------------------------------PYYTSAYDM 505

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897
           D   +I+  +  Q+ +DQ  SL L++               + + + L+ +   A+  G+
Sbjct: 506 DMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGI 565

Query: 898 KTTYYLRS 905
           K+ YY+R+
Sbjct: 566 KSIYYIRT 573


>gi|290889637|ref|ZP_06552727.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429]
 gi|290480835|gb|EFD89469.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429]
          Length = 723

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 151/723 (20%), Positives = 288/723 (39%), Gaps = 82/723 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      K+  +        L  E F   ++       L +      +  L + L    
Sbjct: 34  KEARDAFLKENVEPNRLRFSSL-KERFDWLVKNNFVESQLVKKYDFTFIEKLYDFLDAVH 92

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y +  +     +E  +    R+ +         +K A+   + + 
Sbjct: 93  FQFQSFMAAYKFYTQYAIKTDDGNYYVESYED---RITVNALYYADGDQKLAMRIADEMI 149

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  GA + G    + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +
Sbjct: 210 VREAGASVMGLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +     LFSP +V  ++ +    +    + Y+
Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGV-PFNYVDLTKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 EIK  + + A  L  ++  +  E+G+P++   D  N  +P    G V +SNLC+
Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPVY--GKVVTSNLCS 385

Query: 587 E------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E                +       CNLGSIN+      +  D+ K   T+  A+  +  
Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMM--HTADFGKSVETMTRALTFVSE 443

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             DI+   +   +  N    AIGLG MG  + L    I Y    A++  +      +++ 
Sbjct: 444 SSDIS--VVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYYT 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747
           + AS ++A+ER  ++  F+ S +  G +       D      +V+      +  +   W 
Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDYHVPTIEDWQ 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806
            LK+ V   G+ N+   A+APT +I+ +   + S+ P    +  +   M+G         
Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEARAEGMTGRVFYP---- 617

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                   L +E +                        + +A+++D   +I++ +  Q+ 
Sbjct: 618 -----ANGLSNETL----------------------PYYVSAYDLDQRKVIDTYAAAQEH 650

Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DQ  ++ L++                   + + L  +   A+  G+K+ YY+R+ +  +
Sbjct: 651 VDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTDDN 710

Query: 911 VEK 913
            E+
Sbjct: 711 TEQ 713


>gi|116490255|ref|YP_809799.1| ribonucleotide-diphosphate reductase subunit alpha [Oenococcus oeni
           PSU-1]
 gi|116090980|gb|ABJ56134.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Oenococcus oeni PSU-1]
          Length = 723

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 150/723 (20%), Positives = 287/723 (39%), Gaps = 82/723 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      K+  +        L  E F   ++       L +      +  L + L    
Sbjct: 34  KEARDAFLKENVEPNRLRFSSL-KERFDWLVKNNFVESQLVKKYDFTFIEKLYDFLDAVH 92

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y +  +     +E  +    R+ +         +K A+   + + 
Sbjct: 93  FQFQSFMAAYKFYTQYAIKTDDGNYYVESYED---RITVNALYYADGDQKLAMRIADEMI 149

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  GA +      + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +
Sbjct: 210 VREAGASVMRLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +     LFSP +V  ++ +    +    + Y+
Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGV-PFNYVDLTKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 EIK  + + A  L  ++  +  E+G+P++   D  N  +P    G V +SNLC+
Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPVY--GKVVTSNLCS 385

Query: 587 E------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E                +       CNLGSIN+      +  D+ K   T+  A+  +  
Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMM--HTADFGKSVETMTRALTFVSE 443

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             DI+   +   +  N    AIGLG MG  + L    I Y    A++  +      +++ 
Sbjct: 444 SSDIS--VVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYYT 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747
           + AS ++A+ER  ++  F+ S +  G +       D      +V+      +  +   W 
Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDYHVPTIEDWQ 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806
            LK+ V   G+ N+   A+APT +I+ +   + S+ P    +  +   M+G         
Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEARAEGMTGRVFYP---- 617

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                   L +E +                        + +A+++D   +I++ +  Q+ 
Sbjct: 618 -----ANGLSNETL----------------------PYYVSAYDLDQRKVIDTYAAAQEH 650

Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DQ  ++ L++                   + + L  +   A+  G+K+ YY+R+ +  +
Sbjct: 651 VDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTDDN 710

Query: 911 VEK 913
            E+
Sbjct: 711 TEQ 713


>gi|229543872|ref|ZP_04432931.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus coagulans 36D1]
 gi|229325011|gb|EEN90687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus coagulans 36D1]
          Length = 852

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 155/742 (20%), Positives = 276/742 (37%), Gaps = 123/742 (16%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMGL--- 328
           D      ++  E D+                      IE P   +      R A GL   
Sbjct: 86  DWEKNEAEVLIEEDYRQALEHPDERETGVIKRSLD-IIEKPLEVYYEQIAKRNATGLAAV 144

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386
              E ++ +   +FYN L + +F+ +   L+ +G+       +C++   VPD   GI   
Sbjct: 145 EKTEEKRNEWFEKFYNELVNLNFIPAGRVLYGAGSETEVTYFNCYVMPFVPDSREGISEH 204

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            ++   +    GG+G + + +R       G NGKS G + +L         V QGG R+G
Sbjct: 205 RKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGGSRRG 264

Query: 447 AVCAYLETWHIDVEEFLDLRKNTG------------------------------DDRRRT 476
           A    L  WH D+ EF+  +                                   +R+  
Sbjct: 265 AQMIMLAVWHPDIVEFIISKMQNPRILRFLIENTNDEWIRKLAHDKLKFTPLSEMERQMY 324

Query: 477 HDMNTANWIP------DLFMKRVTQN----AGWTLFSP----------------DEVSDL 510
           H +     IP      +  MK   +       +T+ +P                 E  + 
Sbjct: 325 HGIVNYKHIPGQGGFTEEVMKEAEEKLETGGHYTVHNPEFLTGANISVCLTKEFMEAVEQ 384

Query: 511 HDLYGKEF--------EIAYENYERQADRGE----------IKVFRKISAVALWRKMLTM 552
              +  +F        E      E     G+          ++V+RKI A  LW  +   
Sbjct: 385 DAEFELKFPDVENYSEEEMRIYNEEWHKIGDVREWEKLGRKVRVYRKIKAKELWNLINIC 444

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
              +  P + F D  N  +  + +   V ++N C E  L       +VCNL ++NL    
Sbjct: 445 ATYSAEPGVFFIDNANDMTNAKAYGQKVVATNPCGEQPLAPY----SVCNLAAVNLAKMV 500

Query: 612 ANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                +  +D+L  T+RT VR+ DNVID   + +++ KK     R +GLG+MG    L  
Sbjct: 501 DKETKEVRWDQLKQTVRTGVRMQDNVIDATPYFLKENKKQALGERRVGLGVMGLADLLIY 560

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +   Y S E  ++ D+  E I+  A  AS+E+A+E+G++    G          ++    
Sbjct: 561 MEKEYGSEEGNKLVDKVFETIATEAYRASIEIAKEKGSFPFLTG----------ETEEET 610

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
             +R         +   ++++K +   G+RNS+ + +APT +   + GVS  ++P +   
Sbjct: 611 NRLRHAFTETGYMKNMPEDIRKAILKHGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFS 670

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +S   G F  VN+ +V E   +    +                    D L     TA 
Sbjct: 671 YFRSGRLGKFIEVNADIVQEYLDKHPETDK-------------------DHLPNWFVTAM 711

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           ++ P    +     Q+W+D + S  +      + ++++ +Y + +  G K        S 
Sbjct: 712 DLAPEAHADVQCVIQRWVDSSISKTVNAPRGYTVEQVEKVYERLYKGGAKGGTVYVDGSR 771

Query: 909 TSVEKSTLKGVDGKLNAVPVTD 930
              +  TLK  + +       +
Sbjct: 772 -DSQVLTLKAEEPQEEKREKAE 792


>gi|329769049|ref|ZP_08260471.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
 gi|328839540|gb|EGF89116.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
          Length = 696

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 164/691 (23%), Positives = 287/691 (41%), Gaps = 69/691 (9%)

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294
               + ++  +   +  Y   F +YIE+ +   L   +   F+        K+ +D+A +
Sbjct: 44  KFSSEIKRLRYLVEENYYYNIFDKYIEDEIVECLELAANYKFEFKSYMAASKFYKDYALK 103

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354
               +   + Y            Q  F+ VAM LA         A E    +       +
Sbjct: 104 TNDKKQYLENY-----------NQHVFI-VAMYLA---DGNVSLAKELMISMLEQRVQPA 148

Query: 355 TPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           TPT  NS  +R  +L SCFL  V D L  I         L+K  GG+  + + +R  G  
Sbjct: 149 TPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGES 208

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I G  G ++GVIP  K         +Q G+R GA   YL  +H DV EFLD +K   D+ 
Sbjct: 209 IKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEE 268

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R   ++T   +P LF     +N  + +F P  + + + L   + ++A    E   +   
Sbjct: 269 LRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDLAKYYDEFVVNENI 328

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           +K  RK +A  +   +     ++G+P++ FKD  N     + +G V  SNLCTEI     
Sbjct: 329 MK--RKYNARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEIFQLQE 386

Query: 594 SEETAVCNLG-------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645
           +        G       S NL +    N  +  K+  +I + +  L  V D         
Sbjct: 387 TSVIKDYGEGDIIKRDISCNLASLNIVNVMESKKVKESIYSGMDALTFVSDSTKIKNAPG 446

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K+N    ++GLG M     L    I Y S EA + A+     ++++ +  S+++A++R
Sbjct: 447 VVKANEEFHSVGLGAMNLNGYLAKNCIAYDSEEAKDFANVFFMMMNYYTLERSMQIAKQR 506

Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
             ++  F+ S +  G +    I          + E+ + + +   ++  W  LK R+K  
Sbjct: 507 GQSFKDFEKSDYYNGSYFAKYIEKDYLPKSDKVKELFEGIYIP--TKEDWHSLKNRIKEN 564

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+ ++  MAIAPT +I+ +   + S+ P    +  ++  + +      +L          
Sbjct: 565 GLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRTYGNAETFYPMPYL---------- 614

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                                    +  + +AF +D M LI+  S  Q+ +DQ  S+ LY
Sbjct: 615 ---------------------SPKTQWYYKSAFTMDQMKLIDLMSVIQEHVDQGISVILY 653

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           ++ + + ++L   Y  A   GLK+ YY R++
Sbjct: 654 VNSDITTRELARYYIYAHHKGLKSLYYTRNK 684


>gi|325284718|ref|YP_004264181.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           proteolyticus MRP]
 gi|324316207|gb|ADY27321.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus
           proteolyticus MRP]
          Length = 695

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 169/708 (23%), Positives = 292/708 (41%), Gaps = 65/708 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           +V       P     H+++    E      E GV    L E     ++  + N     + 
Sbjct: 27  QVYFQEKVNPNTVFFHDLK----EKIRYMTENGVWDASLFERYSYDEVQQVFNRAYGYKF 82

Query: 291 FAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++G    Y  Y          +E  +      A+  +       + A+E  + L +
Sbjct: 83  RFKSFMGAYKFYSEYATMTPDRSRWLERYEDRMSITALARSSN----VEEALELVHHLVN 138

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             F  +TPTL NSG  +  +L SCFL     D+L  I   L   A L+K  GG+G + + 
Sbjct: 139 QTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLNSITKTLSFVAELSKGGGGIGVEVSN 198

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  + G    ++GV+   K+ ++     +Q G+R GA   YL   H D  + L  +
Sbjct: 199 LRARGESLRGIQNVTKGVMGVAKMLDNMLRYADQAGQRPGAGAIYLSVMHADFMDVLSAK 258

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D+  R   ++    IPD+FM++V        F P     +    G+EF     N E
Sbjct: 259 KIASDEDSRLKTLSVGATIPDIFMQKVRSGEDIYQFYP---YSIEQETGREFTSIDWNEE 315

Query: 527 RQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            QA     ++  +++SA  ++  +     E+G+P++ F+   N  +P  +VG +  SNLC
Sbjct: 316 YQALADNPRIRKKRVSARRVFEDIAITQGESGYPYLLFEGNANRANPIPNVGKILMSNLC 375

Query: 586 TEITLNSSSEETAVC---------NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           +EI   +                    S NL +           +   +  A+R+LD+V 
Sbjct: 376 SEILQPTRPSYFHPYGEEHKDRIGLDVSCNLSSLVIEQTMRSGDMGRVVGAAIRMLDDVA 435

Query: 637 -DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
              +   +   K++N   R+IGLG MG  S L    + Y S EA++  D     + +HA 
Sbjct: 436 RSTSVTEVPAVKRANDEMRSIGLGAMGLHSFLAKNELIYGSEEALDFVDTFFAAVHYHAR 495

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDE 748
            AS+E+A++ G  ++ F+GS +  G +       D     AEV          ++  W +
Sbjct: 496 KASMEIARDTGFVFAGFEGSRYADGSYFEQYLAKDFTPKTAEVAALFEGHTLPTKEDWAQ 555

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L + ++  G+ +S  MAIAPT +I+ +   S SI P  + +  +++           L  
Sbjct: 556 LVRDIQQHGLAHSFVMAIAPTGSISYVSHASASIMPITEKVETRTSNKARTIYPMPHLNV 615

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           + +                                 +  A+++D   ++++ +  Q+ +D
Sbjct: 616 DTE-------------------------------WYYEEAYDMDMNRVLDTVATAQRHVD 644

Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Q  S  L++    S + L   Y QA+L G+KT YY R R  T  E  T
Sbjct: 645 QGISCTLFVPGTCSTRDLQRYYIQAYLKGVKTLYYTRMRKTTIEECLT 692


>gi|118586507|ref|ZP_01543951.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus
           oeni ATCC BAA-1163]
 gi|118433071|gb|EAV39793.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus
           oeni ATCC BAA-1163]
          Length = 723

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 150/723 (20%), Positives = 288/723 (39%), Gaps = 82/723 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E      K+  +        L  E F   ++       L +      +  L + L    
Sbjct: 34  KEARDAFLKENVEPNRLLFSSL-KERFDWLVKNNFVESQLVKKYDFTFIEKLYDFLDAVH 92

Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y +  +     +E  +    R+ +         +K A+   + + 
Sbjct: 93  FQFQSFMAAYKFYTQYAIKTDDGNYYVESYED---RITVNALYYADGDQKLAMRIADEMI 149

Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              F  +TP+  N+G     +L SCF+    DD+  I   +     L+K  GG+G + + 
Sbjct: 150 HQRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSN 209

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  GA + G    + GV+P +K+  D     +Q G R+GA  AYL  +H DV  FL  +
Sbjct: 210 VREAGASVMGLANMAGGVVPIMKLMEDVFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTK 269

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +   +     LFSP +V  ++ +    +    + Y+
Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGV-PFNYVDLTKEYD 328

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                 EIK  + + A  L  ++  +  E+G+P++   D  N  +P    G V +SNLC+
Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPVY--GKVVTSNLCS 385

Query: 587 E------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E                +       CNLGSIN+      +  D+ K   T+  A+  +  
Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMM--HTADFGKSVETMTRALTFVSE 443

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             DI+   +   +  N    AIGLG MG  + L    I Y    +++  +      +++ 
Sbjct: 444 SSDIS--VVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVSLDFVNTFFLMTNYYT 501

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747
           + AS ++A+ER  ++  F+ S +  G +       D      +V+      +  +   W 
Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLAKDWGPKTDKVKKLFSDYHVPTIEDWQ 561

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806
            LK+ V   G+ N+   A+APT +I+ +   + S+ P    +  +   M+G         
Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEARAEGMTGRVFYP---- 617

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866
                   L +E +                        + +A+++D   +I++ +  Q+ 
Sbjct: 618 -----ANGLSNETL----------------------PYYVSAYDLDQRKVIDTYAAAQEH 650

Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           +DQ  ++ L++                   + + L  +   A+  G+K+ YY+R+ +  +
Sbjct: 651 VDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYNQGIKSIYYIRTFTDDN 710

Query: 911 VEK 913
            E+
Sbjct: 711 TEQ 713


>gi|311694338|gb|ADP97211.1| ribonucleotide-diphosphate reductase subunit alpha [marine
           bacterium HP15]
          Length = 714

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 127/622 (20%), Positives = 251/622 (40%), Gaps = 54/622 (8%)

Query: 321 FMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT- 374
           + RVA  LA  E +  + + ++ +        + +     N+G    +      +C ++ 
Sbjct: 46  YERVAKALAEVENKSVRTQHMKNFIWALQNGAIPAGRITSNAGAEAHKPATSTINCTVSG 105

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           TV D +  I     E  +  K   G+G +++ +R  GA++ G    + G + F+ + +  
Sbjct: 106 TVQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDRM 165

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              V+  G R+GA  A  +  H DV +F+  ++    +  R    N +  I + F++ V 
Sbjct: 166 CFTVSSAGGRRGAQMATFDVHHPDVIDFIQAKR----EDGRLRQFNLSLLITEDFIEAVR 221

Query: 495 QNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
            +A W L  P           ++SD      ++F            +   +++R + A  
Sbjct: 222 NDADWHLSFPVTKKEVEDEKLDLSDESQFVYRDFPEQKGYVVNGEGKVACRIYRTLKAQF 281

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +W  ++T  ++   P     D  N  +       + ++N C E  L         C LGS
Sbjct: 282 IWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPY----GSCLLGS 337

Query: 605 INLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           +NL         D     Y+K    +    R+LDNV++IN   + + +      R  G+G
Sbjct: 338 VNLTMFVDYPFTDKASFNYEKYRKVVAIFTRMLDNVVEINGLPLAEQRHEITYKRRHGMG 397

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF----KGSL 715
           ++G  S L +L +PY S E+V+  +E +  ++      S+ LA+E+G         + + 
Sbjct: 398 ILGLGSTLAMLRMPYGSEESVQFTEEVVREMAVEGWRQSLALAEEKGVAPIMDDEFEITP 457

Query: 716 WDQGVFPI---DSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAI 766
                 P    D   L  +V+  +   + S+          +L + +   G R ++  +I
Sbjct: 458 KMLTKCPQLSEDGYKLGDKVKGRILHAKYSKYMQEIAKVEPKLVEELAEKGGRFTHHTSI 517

Query: 767 APTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI-SD 823
           APT TI+       S  I+PS+ + Y ++ +               ++ D++   ++   
Sbjct: 518 APTGTISLSLANNASNGIEPSFSHHYARNII--------REGRKTKEKVDVFSFELLAYR 569

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
              + G++   E     L     T+ ++ P   ++  +  QKW+D + S    +  + + 
Sbjct: 570 HMVNPGAMPFSEDEDKKLPAYFTTSDDVTPSQHVDIQAAAQKWVDSSISKTANVPTDFAY 629

Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904
           +    IY  A+  GLK     R
Sbjct: 630 QDFKDIYLYAYDKGLKGCTTFR 651


>gi|225873206|ref|YP_002754665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793913|gb|ACO34003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium capsulatum ATCC 51196]
          Length = 1083

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 123/623 (19%), Positives = 233/623 (37%), Gaps = 58/623 (9%)

Query: 346 LSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
             ++H+   T  +  S T +  PQ S+CF+  V D L  I    +   ML K+  G G +
Sbjct: 164 AQNWHWNPHTCAVEFSVTGYRNPQCSACFINAVDDSLDSILTLAKTEGMLFKWGSGTGTN 223

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462
            +P+RG    + G  G + G + F++  +  A  +  GGK R+ A    L   H D+ +F
Sbjct: 224 LSPIRGSMEQLSG-GGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNVDHPDIVDF 282

Query: 463 LDLRKNTGDDRRR-THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           ++ +            +    +  PD         +     + +    ++D + +  E  
Sbjct: 283 IECKMKEEAKAWALMREGYDGSSGPD-----SEAYSSIFFQNANNSVRVNDEFMRAVEKD 337

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            E   R    G     +   A  +  K+    ++ G P + +    N     ++ G +++
Sbjct: 338 GEFTTRTVKDGA--AVKTYKAREIMHKIAEATWQCGDPGMQYDSTINRWHTSKNSGRINA 395

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINC 640
           SN C+E        + + CNL S NLL        FD       I   +  ++ ++D + 
Sbjct: 396 SNPCSEYMF----LDNSACNLASFNLLKFMTPAGTFDIRAYRHAIDVLITAMEILVDNSG 451

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +  E   +++H +R +GLG     + L  L +PY S    + A      +   A   S  
Sbjct: 452 YPTENIARNSHDYRPLGLGYANLGALLMALGLPYDSDAGRDFAATLTAIMCGEAYLQSSR 511

Query: 701 LAQERGA----------YSSFKGSL---WDQGVFPIDSIGLLAEVRDEL----------- 736
           +A++                  G+    +      +D I +     +++           
Sbjct: 512 IAEKCPPLASATPLTASVERNGGACPGFYVNREPFLDVIRMHRAEVNKIGKSKTSSEPFK 571

Query: 737 -----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL- 789
                A+   S+  WD+     +  G RNS    +APT TI  +    +  I+P    + 
Sbjct: 572 VPELDALITASKECWDQALAHGEKYGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVK 631

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHAT 847
           Y K    G   +VN+ +   L +    +E + + + Y D  G+I     I  +   +   
Sbjct: 632 YKKLVGGGMIKIVNNTVPAALFKLGYKNEDVDAIVSYIDATGTIEGAPGIKPEHLAVFDC 691

Query: 848 AF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
           +F        I  +  I+  +  Q ++  A S  + +  + +   +   Y ++W  GLK 
Sbjct: 692 SFKPAKGTRSIHYLGHIKMMAATQPFLSGAISKTVNMPHDSNIDDIAEAYLESWRQGLKA 751

Query: 900 TYYLRSRSATSVEKSTLKGVDGK 922
               R  S  +   +   G   K
Sbjct: 752 VAIYRDGSKGAQPLNVSDGKGAK 774


>gi|282598965|ref|YP_003358882.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage
           phiW-14]
 gi|257219035|gb|ACV50050.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage
           phiW-14]
          Length = 711

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 158/676 (23%), Positives = 268/676 (39%), Gaps = 97/676 (14%)

Query: 279 VYLANDLKYER-DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337
            YL   +   R D +        L  +++        E  Q    R A+      +    
Sbjct: 4   EYLGIIIDETRTDTSKGRTASNYLITQHYSR----PGETIQQTIARAAV----AWSSNLA 55

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
            A   Y+  S   F+ ++P   N+            SCFL  VPD + G+     E ++L
Sbjct: 56  HAQRLYDYASKDDFIWASPAFSNATLPGEKIRAMPISCFLPDVPDSVPGLLYQKAELSLL 115

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +            V      I   + K+ G IPF+   +   +A  QG  R+GA+ A L 
Sbjct: 116 SVLG-------GGVGQNFGGIRSVSDKAPGPIPFIAENDSAILAWKQGKIRRGALSANLG 168

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D  EF+ +R  TGD  R++ +++    + D +M+ V                    
Sbjct: 169 VTHPDTMEFMRIRVPTGDIERKSLNIHHGFNVTDEYMQAVVDGIETLPL----------- 217

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                                K    ++    +R+M+T+   TG P++ F D        
Sbjct: 218 ----------------IDPTGKQVGSMNPREHFREMVTVRSRTGEPFMYFIDRAQEYLSL 261

Query: 574 QHV---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH------FANNQFDY-DKLAS 623
                     ++N+CTEITL ++ + T VC L SIN   +      +     D  + L +
Sbjct: 262 PQKLIGMACKATNICTEITLAATKDRTPVCCLCSINAERYEDFKPYYQEMVSDLIEMLDN 321

Query: 624 TIRTAVRVLDNVI---------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
            I   V+ ++ V          D+    ++K KKS    R++GLG+MG    L    + +
Sbjct: 322 IIEFFVQNVEKVAEGYADQLDRDLIRLLVQKVKKSAECERSVGLGVMGLAYMLQRADMVF 381

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
           A  ++ E   E    +   + +AS  L  ERG     +          ++    L    D
Sbjct: 382 AGEDSREYELEFFRQLKDFSHAASCRLGIERGVPPDIQA--------YLEKCKELGIEPD 433

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +NR                  RN + +AIAP A  + I   S SI+  Y N+Y +  
Sbjct: 434 PYWVNR------------------RNLHLLAIAPNANSSVILNTSASIEFMYSNVYSREM 475

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            +G F V N +L   L+ +    E + + +K   GS+  ++ + +  K+++A   E++ M
Sbjct: 476 RTGTFEVRNRYLEKLLESQGRNTEEVWNQIKADSGSVKGLDFLTEHQKRVYAVPEEMNMM 535

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLKTTYYLRSRSATSV 911
            ++  A  RQ +I QAQSLNL+   P G  ++    ++  AW +G+K+ YY ++ S   +
Sbjct: 536 DVVVRAGERQVYICQAQSLNLFF--PPGSDINFVMAVHILAWKVGVKSLYYYKTESEVKI 593

Query: 912 EKSTLKGVDGKLNAVP 927
           EK + K    KL    
Sbjct: 594 EKPSDKTEREKLTQDE 609


>gi|4490609|emb|CAB38642.1| ribonucelotide reductase major subunit [Staphylococcus aureus]
          Length = 718

 Score =  280 bits (717), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 162/695 (23%), Positives = 285/695 (41%), Gaps = 67/695 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 61  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  +K+N    ++GLG+M     L    I Y S EA + A+     ++F++I  S+
Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522

Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752
           E+A+ERG  Y  F+ S +  G +       +      +VR+    M   +   W +L++ 
Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                              +AF  D M LI+  +  Q  IDQ  S
Sbjct: 639 QTMW---------------------------YCKSAFNTDQMKLIDLIATIQTHIDQGIS 671

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706


>gi|15829012|ref|NP_326372.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089956|emb|CAC13714.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (RIBONUCLEOTIDE
           REDUCTASE) [Mycoplasma pulmonis]
          Length = 711

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 152/688 (22%), Positives = 287/688 (41%), Gaps = 64/688 (9%)

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           H  +   + +     ++     + L +      L  L +       F   ++G+   Y+ 
Sbjct: 45  HFRVFESFEKRIEFLVKNNYYEKSLIDQYTISQLKELNDLAYSYNHFFPSFMGILKFYNA 104

Query: 305 YFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
           Y L        +E  +   +  A+ LA  + EK K  ++    +    F  +TPT  N+G
Sbjct: 105 YALKSFDGKEYLENFEDRALMNALFLANGDFEKAKAILK---EIMLKRFQPATPTFLNAG 161

Query: 363 TRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
                +  SC+L    D++  I  ++  +  L+K  GG+    T +R LGA I     ++
Sbjct: 162 KAQRGEYVSCYLIRTEDNMESISRSITTSLQLSKRGGGVAVLLTNLRELGAPIKNIQNQA 221

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G+IP +K+  D+    NQ G+R+GA   YL   H D+ +FLD ++   D++ R   ++ 
Sbjct: 222 TGIIPIMKILEDSFSYANQLGQRQGAGAVYLNIHHPDILQFLDSKRENADEKIRIKSLSL 281

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-I 540
              + D+  +    N    LFSP    D+   Y K         E        K+ +  I
Sbjct: 282 GLVVTDIAFELAKNNEKLALFSP---YDIQKEYKKPMSDISITQEYYNLLKNDKIKKTYI 338

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-------VGVVHSSNLCTEIT---L 590
           +A  L+  +  + FE+G+P++ F D  N R+   +          +   +  +E +    
Sbjct: 339 NARKLFTLIAELHFESGYPYLLFDDTVNRRNAHPNRIVMSNLCSEIVQPSTASEYSADLS 398

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
            +   +   CNLGS+N+     +   ++  L +    A+  +    D++  +    +K N
Sbjct: 399 YTKVGDDISCNLGSLNIAKALES-GREFKSLVANSIFALNQVSRKADLS--SAPSIEKGN 455

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + + AIGLG M     L    I Y S EA++  +     ++++A  AS EL+   G +  
Sbjct: 456 NKNHAIGLGAMNLHGFLANNEIFYNSQEALDFTNMFFYAMAYYAFEASQELSLIYGKFHG 515

Query: 711 FKGSLWDQGVFPIDS-----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           F+ + +  G +                  + ++ ++      S+  W EL +++K  G+ 
Sbjct: 516 FEKTKFADGSYFEKYTKGDENKWKAKTKKVQDILEKYDFYIPSQKDWIELVEKIKKTGIA 575

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           NS+ MAIAPT +I+ +   + S+ P    +  +         V ++        +L    
Sbjct: 576 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEARKEGKLGRVYVPAY--------NLNSNN 627

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
               ++                      A+E+ P+ +I+ A+  Q+ IDQA SL L+L +
Sbjct: 628 FKYYIEG---------------------AYEMGPIPIIDIAAEAQQHIDQAISLTLFLTD 666

Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             + + L+  Y  A+  G  + YY+R R
Sbjct: 667 KATTRDLNKAYIHAFKKGCSSIYYVRVR 694


>gi|320546424|ref|ZP_08040739.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equinus ATCC 9812]
 gi|320448809|gb|EFW89537.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           equinus ATCC 9812]
          Length = 719

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 152/714 (21%), Positives = 281/714 (39%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   + +           +  +       + ++   +     +F +  L+ DL    
Sbjct: 32  KEALQAFFLENVIPNTMTFNSITDKINYLIEHDYLEEAFIRSYSPEF-IESLSRDLHAHH 90

Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N     +E  +    R+           E  A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGSQYLESIED---RILFNALYFADGNEDLAKDLATEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +  +  +TP+  N+  +R  +  SCFL ++ DD+  I  ++     L++  GG+G + + 
Sbjct: 148 NQRYQPATPSFLNAGRSRRGEFVSCFLISMTDDMNSIGRSINSALQLSRIGGGVGINLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDILAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +     +I  E   
Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELTRNNEDMYLFSPFSVEREYGVPYSYVDITAEYDN 327

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             A+   +K   KI A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 328 MVANPNIVKT--KIKARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383

Query: 587 EI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E+               +       CNLGS N++    +          +I+   R L  
Sbjct: 384 EVLQVQTPSVINDAQEFTKMGTDISCNLGSTNIVNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +  ++   K  N      GLG MG  + L   HI Y SPE++E  +     +++ 
Sbjct: 439 VSDTSSIESVPTIKHGNEQAHTFGLGAMGLHTFLAQNHIQYGSPESIEFTNIYFMLLNYW 498

Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746
            +  S ++A+ER   +  F+ S +  G +    I      + +            S   W
Sbjct: 499 TLVESNKIARERKQTFVGFEKSSYADGSYFDKYITDDYVPKSDRVKELFAKHFIPSGKDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
            EL+  V   G+ + N +A+AP  +I+ I  VS S+ P  Q +  +     G        
Sbjct: 559 LELRDAVMRDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP--- 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                          +  +    + +A+++D   +I+  +   +
Sbjct: 616 ----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+L               + + + L  +   A+  G+K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701


>gi|321496612|ref|YP_004207897.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
 gi|320332514|gb|ADW24402.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
 gi|320332597|gb|ADW24484.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru]
          Length = 772

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 162/762 (21%), Positives = 277/762 (36%), Gaps = 93/762 (12%)

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL---QILYDRYF 306
             Y + F   +E  + A L         L  L               G    +  YD Y 
Sbjct: 46  DEYRDVFKDVLEMELSAFL---EKNKEGLQELLQQFMRNGYDNLVGRGYLSAKRFYDTYV 102

Query: 307 LHINGSRIEMPQAFFMRVAMG-----------------LALKETEKEKRAVEFYNLLSSF 349
           L  +G   E     F+RV+                   L     ++      F+ ++S+ 
Sbjct: 103 LRGSGKV-ESVPFLFLRVSCFCAYQCLQNPCLADTVKALNSWVIDEVSLVKYFFRMVSTM 161

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
              C+TP L ++G +   LSSCF+    +  +   +     E   L +   G+G +    
Sbjct: 162 TVCCATPILRSAGVQGANLSSCFIIDRDMTTERETVQAVCSELTSLLECKSGVGINCAMF 221

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                 I+            L++ N      N    R  +   Y+E WH  +  FL  + 
Sbjct: 222 SHGEKSINS----------LLQMVNGITAYFNDSNVRPVSTALYIEIWHHQIMSFLTAKL 271

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
               +  R  ++     + DLF K    N    W LF P +   L  LYGK FE AY   
Sbjct: 272 PENPE--RCANVFQGVSVCDLFFKMYKNNPDGEWFLFDPGQFPGLTGLYGKTFEEAY--- 326

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNL 584
              A   + K    +   ++   +++ + +TG P++  KD  N     +  G  + ++NL
Sbjct: 327 --MALVRDGKFKASVPLKSVMFALVSSIVKTGGPYVMSKDAMNRHHWHETQGQAIVAANL 384

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN-----------------QFDYDKLASTIRT 627
           CTE+       + + CNL SI+L      +                  F Y  L   + T
Sbjct: 385 CTEVIQAPGD-DISTCNLASISLPECMHMHGNGHSEGGLSCGQTTDKTFCYSFLEKAVET 443

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           AV V++  I       EK  +     R++G+G+ G      +  + Y   ++ EI    M
Sbjct: 444 AVFVINACIVGGMAPTEKVARG-QLFRSMGIGVQGLADVFAMCGLEYFDEKSEEIDSRIM 502

Query: 688 EFISFHAISASVELAQER--GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
           E + F A+  S+ + +      +  ++ S   +G F         + R ++     S   
Sbjct: 503 ESMYFTAVKTSMNIVKLGGGEPHKRWEKSKLSKGQF---HWQEFTDCRPKVH----SLSQ 555

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  L       G  N+  +A+ PTA  + + G + S  P + N+  K +   +    N  
Sbjct: 556 WSALSTDCAMYGTYNAQFIALMPTAGTSQLTGYADSCYPFFGNMATKVSNKEEIMRPNRM 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
            ++ +   DL      + ++   G +  +     D  ++  +AFE  P   I  A  R  
Sbjct: 616 FIDSIVPDDL------AAIRQVGGDLAKLPPALADKYRLFKSAFEYSPEDYIRRARVRAP 669

Query: 866 WIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKT-TYYLRSRSATSVEKST-LKGVD 920
           ++DQ+QS+ L+L+E    K   +  +   A  +GLKT  YY R +  T     + + G  
Sbjct: 670 FVDQSQSMTLFLNEKEASKASYVKDLLMYAQEIGLKTLMYYCRIKKETICCDFSCVPGPA 729

Query: 921 GKLNAVPVTDPNSSTHSLGIP--------SSCTSDTECEVCQ 954
              + V    P S     G            C  +  C  CQ
Sbjct: 730 ATPSPVSSFMPESDGDGEGQSGHVSIKRDRECDEEQCCSACQ 771


>gi|307703870|ref|ZP_07640811.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis ATCC 35037]
 gi|307622705|gb|EFO01701.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus
           oralis ATCC 35037]
          Length = 623

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 150/646 (23%), Positives = 264/646 (40%), Gaps = 77/646 (11%)

Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
           +     Y++Y L  N     + ++   RV           E  A +  N +    +  +T
Sbjct: 1   MAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQRYQPAT 59

Query: 356 PTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
           P+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R  GA I
Sbjct: 60  PSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPI 119

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K   D++ 
Sbjct: 120 KGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKV 179

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+       I
Sbjct: 180 RVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDELVANPNI 238

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           +  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI      
Sbjct: 239 RKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEILQVQ-- 293

Query: 595 EETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTI 643
            E ++ N            S NL +    N         +IR  VR L  V D  +   +
Sbjct: 294 -EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHIVAV 352

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
                 N      GLG MG  S L    I Y S E+VE        +++  +  S  +A+
Sbjct: 353 PTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWTLVESNNIAR 412

Query: 704 ERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ERG  + +F+ S +  G +    +          + E+  ++ +   +   W EL+++V+
Sbjct: 413 ERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAT--DWAELREKVQ 470

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQR 813
             G+ + N +A+AP  +I+ I  VS SI P  Q +  +     G                
Sbjct: 471 ADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----------- 519

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                  +  D    + +A+++D   +I+  +   + +DQ  SL
Sbjct: 520 --------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLSL 559

Query: 874 NLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            L++              ++ + + L  +   A+  G+K+ YY+R+
Sbjct: 560 TLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 605


>gi|241888655|ref|ZP_04775962.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864678|gb|EER69053.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella
           haemolysans ATCC 10379]
          Length = 696

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 166/702 (23%), Positives = 283/702 (40%), Gaps = 58/702 (8%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             KL ++V        +            +     +EE     +  + + D  L  L   
Sbjct: 21  FFKLEKDVEAIEEFLREVDFRTVKFNSEMKRLRYLVEENFYYNIFDKYIEDEILECLELA 80

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEM---PQAFFMRVAMGLALKETEKEKRAVE 341
             ++ +F   Y+     Y  Y L  N  +  +    Q  F+ VAM LA         A E
Sbjct: 81  ANFKFEFK-SYMAASKFYKDYALKTNDKKQYLENFNQHVFI-VAMYLA---DGDVALAKE 135

Query: 342 FYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
               +       +TPT  NS  +R  +L SCFL  V D L  I         L+K  GG+
Sbjct: 136 LMIAMLEQRLQPATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGV 195

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
             + + +R  G  I G  G ++GVIP  K         +Q G+R GA   YL  +H DV 
Sbjct: 196 AINLSKLRARGESIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVL 255

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EFLD +K   D+  R   ++T   +P LF     +N  + +F P  + + + L   + +I
Sbjct: 256 EFLDTKKVNADEELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDI 315

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           A       A+   +K  RK  A  +   +     ++G+P++ FKD  N     + +G V 
Sbjct: 316 AKYYDRFVANENIMK--RKFDARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVK 373

Query: 581 SSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            SNLCTEI             E+  +    S NL +    N  +  K+  +I + +  L 
Sbjct: 374 MSNLCTEIFQLQETSVIKDYGEDDIIKRDISCNLASLNIVNVMESKKIKESIYSGMDALT 433

Query: 634 -NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
                          K+N    ++GLG M     L    I Y S EA + A+     +++
Sbjct: 434 FVSNSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNY 493

Query: 693 HAISASVELAQ-ERGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLP 745
           + +  S+++A+     +  F+ S +  G +       D + +  +V+     +   ++  
Sbjct: 494 YTLERSMQIAKDRNETFKDFEKSDYYNGSYFTKYIENDYLPVTEKVKALFEGIYIPTKED 553

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  LK RVK  G+ ++  MAIAPT +I+ +   + S+ P    +  +S  + +      +
Sbjct: 554 WRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPY 613

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L                                   +  + +AF +D M LI+  S  Q+
Sbjct: 614 L-------------------------------SPKTQWFYKSAFTMDQMKLIDLMSVIQE 642

Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            +DQ  S+ L+++ + + ++L   Y  A   GLK+ YY R++
Sbjct: 643 HVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK 684


>gi|319891737|ref|YP_004148612.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161433|gb|ADV04976.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465094|gb|ADX77247.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 701

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 168/695 (24%), Positives = 287/695 (41%), Gaps = 58/695 (8%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L +  ++ Q  T H    L   +F   ++      +  E   +  LV L         
Sbjct: 34  EALASYLEEIQDKTVHFDSELERLHF--LVDNHFYYNVF-EEYSEAQLVELIAFATEIPF 90

Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               Y+     +  Y L  N     +E      M V+  LA       + A +    +  
Sbjct: 91  RFASYMSASKFFKDYALKTNDKSQYLEDYHQHVMIVSFYLA---KGNVELAKKLIQAMVE 147

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
             +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +
Sbjct: 148 QRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKL 207

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K
Sbjct: 208 RARGEAIKGIKGVAKGVLPIAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKK 267

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D+  R   ++T   +P  F +   +   + +F+P  V   + +   +     E Y+R
Sbjct: 268 INADEDLRLSTISTGLIVPSKFFELAKEGKDFFMFAPHTVEQEYGVTLDDIN-IDEYYDR 326

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +   I + +   A  +   +     ++G+P++ FKD  N      ++G +  SNLCTE
Sbjct: 327 LVENPNI-MKKSKDAREMLNMIAQTQLQSGYPYLMFKDNANRVHANSNIGQIKMSNLCTE 385

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639
           I         +    +  +    S NL +    N  + ++   ++ T +  L  V D  N
Sbjct: 386 IFQLQETSVIHDYGVDDEIKRDISCNLGSLNIVNVMESNQFRDSVHTGMDALTVVSDEAN 445

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  KK+N    ++GLG+M     L   HI Y S EA + AD     +++++I  S+
Sbjct: 446 IQNAPGVKKANSELHSVGLGVMNLHGYLAKNHISYESEEAKDFADVFFMMMNYYSIERSM 505

Query: 700 ELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMNRT-SRLPWDELKKR 752
           ++A+ER   +  F  S +  G +       D +    +V+   A +   +R  W  L+  
Sbjct: 506 QIAKERGETFKDFDKSDYASGRYFERYTSEDFLPKSEKVKALFANHTIPTRDDWKVLQAE 565

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +      F    L  
Sbjct: 566 VEKYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNSETFYPMPF----LSP 621

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           + +W                            + +AF ID M LI+  +  Q  IDQ  S
Sbjct: 622 QTMW---------------------------YYKSAFNIDQMKLIDLIATIQTHIDQGIS 654

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 655 TILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689


>gi|228904847|ref|ZP_04068901.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
 gi|228854861|gb|EEM99465.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis IBL 4222]
          Length = 635

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 155/657 (23%), Positives = 280/657 (42%), Gaps = 53/657 (8%)

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK 331
              + ++  +       +     Y+     Y  Y L  +  +I +      R A+     
Sbjct: 4   EYTEEEVQRIYEAAYTHKFEFQSYMAATKFYKDYSLRSDDKKIYLEDYE-DRAAIVALYL 62

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQEN 390
            +   K+A+ + N +   ++  +TPT  NSG     +L SCFL  + D L  I   L   
Sbjct: 63  ASGNTKKALRYVNQIMKQNYQPATPTYLNSGKARAGELVSCFLLEMDDSLNSINYNLSVA 122

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L+K  GG+  + + +RG    I G    + GV+P +K+  D+   +NQ G+R GA  A
Sbjct: 123 KQLSKIGGGIAINLSKLRGRTEAIKGIENAASGVLPVMKLMEDSFSYINQLGQRPGAGAA 182

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           YL  +H D+ EFLD +K   D++ R   ++     P  F +   QN    LF+P  V   
Sbjct: 183 YLNIFHWDLIEFLDSKKVNADEKTRIQSLSIGLVTPRKFFQLAEQNKEMYLFAPATVYKA 242

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
           + ++  + ++  +  E  A+    K    ++A  +  K+ T+  E+G+P+   K   N +
Sbjct: 243 YGVHLDDMDLDEKYDELVANPMVRKRKLDLTAREMLVKIATIQLESGYPYFMNKTNANEQ 302

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG-------SINLLAHFANNQFDYDKLAS 623
            P + +G V  SNLCTEI     +      N+        S  L +    N  +   +  
Sbjct: 303 HPLKDLGGVKMSNLCTEIFQYMETSVINDYNIADWIKNDISCVLGSLNIVNVMENKDVKE 362

Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            + T + +L +V D          KK+N T  ++GLG M     L    IPY S +A + 
Sbjct: 363 AVHTGMEMLTDVTDKSCIENAPGVKKANATLHSVGLGTMNLHGFLAKNFIPYESEDAKDF 422

Query: 683 ADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVR 733
           A      +++H+I  S E+A+ERG ++  F+ S + +G +    +          + ++ 
Sbjct: 423 ARVFFAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLTTEFLPQSEKVKKLF 482

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           + + +  T+   W+ L K+V+  G+ +S  +AIAP  +   +   + S+ P    +  +S
Sbjct: 483 EGIQIPTTA--DWERLMKQVQRDGLYHSYRLAIAPNQSSGYVQNATPSVMPIVDKVETRS 540

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
                      +    L ++  +                            + +A+E+D 
Sbjct: 541 TDKATTYYPMPY----LSKQTFFS---------------------------YKSAYEMDQ 569

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           M +I+  +  Q  +DQ  S  L++    S + L   Y  A   GLK+ YY R+ ++T
Sbjct: 570 MKVIDLIAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLKSLYYTRTSNST 626


>gi|239928523|ref|ZP_04685476.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291436848|ref|ZP_06576238.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291339743|gb|EFE66699.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 966

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 119/617 (19%), Positives = 228/617 (36%), Gaps = 32/617 (5%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394
           E    E    L    F  ++P  FN GT    Q+S+CF+ +V D +  I    +E  M+ 
Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453
           K   G G + + +R     +    G + G + F++ A+ +A  +  G   R+ A    L+
Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
             H D+E+F++ +    +  R   D      +                 + +    ++D 
Sbjct: 243 VDHPDIEDFIETKVKEEEKIRVLRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           + +  E   +   R    GE  V  ++ A AL+RK+    +    P I + D  N     
Sbjct: 297 FMQAVEQGGKFGLRARMTGE--VIEEVDAKALFRKIAEAAWACADPGIQYDDTINNWHTC 354

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628
              G + +SN C+E        +   CNL S+NL+         N  F+ ++    +   
Sbjct: 355 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFETERFQKVVELV 410

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           +  +D  I       +K  ++    R +G+G     + L      Y S     ++     
Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALSGAITS 470

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRL 744
            ++  A   S ELA   G Y  +  +                  +     +  +   +  
Sbjct: 471 LMTGTAYRRSAELAAIVGPYDGYARNADAHQRVMKQHADANGTAVRMDDLDTPVWAAATE 530

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W ++ +  +  G RNS    +APT TI       +  ++P    + + K    G   +V
Sbjct: 531 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 590

Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857
           N  +   L++    +E + + +      G++ +   +  +  ++   A     I PM  +
Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAPGLKHEHYEVFDCAMGERAISPMGHV 650

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q WI  A S  + +    + ++++ IY +AW +G+K     R         S  
Sbjct: 651 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQPLSAK 710

Query: 917 KGVDGKLNAVPVTDPNS 933
           K  D K   +      +
Sbjct: 711 KKEDEKKAEIAEKTEET 727


>gi|289746859|ref|ZP_06506237.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis 02_1987]
 gi|289687387|gb|EFD54875.1| ribonucleoside-diphosphate reductase alpha subunit nrdE
           [Mycobacterium tuberculosis 02_1987]
          Length = 783

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 159/655 (24%), Positives = 266/655 (40%), Gaps = 71/655 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 71  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
                            + +  A+EI    +I++ +   + +DQ  SL L+  + 
Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDT 681


>gi|320332670|ref|YP_004169381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus maricopensis DSM 21211]
 gi|319753959|gb|ADV65716.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus maricopensis DSM 21211]
          Length = 976

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 142/601 (23%), Positives = 231/601 (38%), Gaps = 91/601 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVA 431
           + TV DD+ GI  A ++ +  AK       D + +R  GA I G+ G S G + FL ++ 
Sbjct: 213 ILTVQDDMGGIIDAARQVSETAKLGLEPRIDLSGMRPEGAPIKGSGGTSSGPVSFLVEIF 272

Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           ++     N                        QGG R+GA  A +   H DV +FL  + 
Sbjct: 273 DNFLEWANRGAETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATISIGHADVLDFLTAKD 332

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL------YGKEFEIA 521
              +           + + D       Q  G       +V   + L      +   F   
Sbjct: 333 LDREASEGDISTFNISILVDEAFWATLQANGLWAIPAQDVPGKYYLEPQKGKFSGSFPEL 392

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578
            E  E    RG      KI A  LWR++    + TG P + F D  N  S  +++G    
Sbjct: 393 PERAE-DGARGVPTYGGKIPAAWLWREIAQHAWSTGEPGLIFVDRINEYSALKNLGERYQ 451

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + S+N C EI L         C+LG+INL A+   + FDY    + +RT VR LD+V+D+
Sbjct: 452 IKSTNPCGEIPLTVG----EPCDLGAINLAAYVKGSDFDYAAFRADVRTTVRFLDDVLDV 507

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +E  ++++ + R +GLG+MG   AL  + + Y +        E M  +   AI+ S
Sbjct: 508 NVFALEDNREASQSLRRLGLGVMGLADALIKMGLRYDNEAGRTAIFEIMSALREEAIAES 567

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             L  ERG Y  +  +       P                                    
Sbjct: 568 ERLGAERGVYRVYTENADKIPHAP-----------------------------------R 592

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----- 813
           RN   + +APT T + + GVS  I+P +     +   S    +++   V  L+       
Sbjct: 593 RNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLETYPPAAN 652

Query: 814 ----DLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                 WD + +   +  + GS+  +  IPD L+++   A +I P+  +      Q+  D
Sbjct: 653 MDVDGKWDWDKVTEAVSENHGSVVGLSFIPDALQQVFVCAHDIKPLDHVRMQGAVQRAFD 712

Query: 869 ------QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
                  + S  + L ++ + + +   Y +A+  G K     R  S      ST K    
Sbjct: 713 AEGYAANSLSKTINLPNDATVQDVQDAYTEAYRTGCKGITVYRDGSRQFQVLSTSKKKAK 772

Query: 922 K 922
           K
Sbjct: 773 K 773



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 45/222 (20%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSS 348
             F+     I   +Y    +G         F RVA  +A  E    +E  A  +++L++ 
Sbjct: 11  KNFDENAHHIAKRQYMQPTDGDLA----GLFRRVATWVAGAEAPEAREHWAQAYFDLMAE 66

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN----AMLAKYSGGLGNDW 404
             F      +  +GT+H  + +CF+    +     F  + E     A++ K  GG G + 
Sbjct: 67  KKFCPGGRVMAGAGTQHGNVLNCFVQGATEHDPSSFAGIMEVAKKLALVTKVGGGNGVNL 126

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
                         G                               Y+   H DV +F++
Sbjct: 127 DVYTPRAPSSRPDAGVRGWA--------------------------YMSAAHPDVTDFIE 160

Query: 465 LRKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA 497
                             R    +   + IP   +    QN 
Sbjct: 161 GMMRPPTQPDGDKEATAIRNWTRVVYGHAIPQDLVVLARQNG 202


>gi|111224293|ref|YP_715087.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni
           ACN14a]
 gi|111151825|emb|CAJ63545.1| Vitamin B12-dependent ribonucleotide reductase (partial) [Frankia
           alni ACN14a]
          Length = 711

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/613 (19%), Positives = 218/613 (35%), Gaps = 36/613 (5%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    + + E    E   LL    F  ++P  FN GT    Q++SCF+    D L  +  
Sbjct: 93  GYFASDDDAEIFEHELIWLLLHQAFSFNSPVWFNVGTDLPQQVASCFILAADDSLDSVLD 152

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
             ++ A+L +   G G + + +R     +  +   + G +  ++ A+ +A ++  GG  +
Sbjct: 153 WYRDEALLFRGGAGSGVNLSRMRSTAELL-PSGRPAPGPVSIMRGADASAGSIRTGGAPR 211

Query: 446 GAV-CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
            A     L+  H D+ +F++ +       R  HD      +                 + 
Sbjct: 212 PATKIVILDVDHPDIADFIECKAREERKIRALHDAGFDMDV------GGRDIDSVQFQNA 265

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +    + D + +    A +       RG+ +  R + A  ++R +    +E   P + F 
Sbjct: 266 NNAVRVSDAFMRAV--AADQSIELRARGDGQTVRTVPARKIFRMIAQAAWECADPGLHFD 323

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623
           D  N        G + +SN C+E        + + C LGS+NLL     + +FD    A+
Sbjct: 324 DTINSWHTCPASGRISASNSCSEYMH----LDNSSCTLGSLNLLRFLGRDRRFDATSFAA 379

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   V  +D  +        +   +  + R +G+G     + L      Y S E    A
Sbjct: 380 AVELVVLAMDISLCFAEVPSRQIGDATRSFRQLGVGHANLGALLMATGQAYDSEEGRATA 439

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT-- 741
                 +S  A   S E+A   G Y  F  +               A +R   A  R+  
Sbjct: 440 AAITSLMSATAYRRSAEIAAVLGPYPGFTANAAAHRRVVARHSAAHAAIRHPPAARRSME 499

Query: 742 ----------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLY 790
                     + L W+      +  G RN++   IAPT T        +  I+P    + 
Sbjct: 500 KSIHEQVLPRAGLEWERALLLGERHGWRNAHLTLIAPTGTTGLAMDCATMGIEPDLALVK 559

Query: 791 VKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHAT 847
           V+ + +G    +VN+ +   L        A+   +      G   +   +  + + +   
Sbjct: 560 VRKSATGSAMRLVNTTVPTALHALGYPRAAVARIVSFIAAHGHAVDAPGLRPEHQAVFDC 619

Query: 848 AF---EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903
           A     IDPM  +   +  Q ++    S  + L    +   +  +    W  GLK     
Sbjct: 620 ALGPRAIDPMGHVRMMAAVQPFLSGGISKTVNLQASATVDDVAALLYAGWRRGLKALAVY 679

Query: 904 RSRSATSVEKSTL 916
           R  +      S +
Sbjct: 680 RDSAKVGQPISGV 692


>gi|324111309|gb|EGC05291.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 528

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 145/545 (26%), Positives = 238/545 (43%), Gaps = 56/545 (10%)

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D     N
Sbjct: 1   MESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYAN 60

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+      +NA  
Sbjct: 61  QLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQM 120

Query: 500 TLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            LFSP    D+  +YGK F +IA   +  +    E    + I+A   ++++  + FE+G+
Sbjct: 121 ALFSP---YDVERVYGKPFADIAISEHYDELVADERIRKKYINARDFFQRLAEIQFESGY 177

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHF 611
           P+I ++D  N  +P    G ++ SNLC+EI   +S+ E           +  S NL +  
Sbjct: 178 PYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN 235

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             +  D    A T+ TAVR L  V DI +  ++   +  N    AIGLG M     L   
Sbjct: 236 IAHTMDSPDFARTVETAVRGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLARE 295

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS---- 725
            I Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +        
Sbjct: 296 GIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGN 355

Query: 726 IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    EL         +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 356 WQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 415

Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++    +G       F+ N                               +
Sbjct: 416 IHPIVAKVEIRKEGKTGRVYYPAPFMTN-------------------------------E 444

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
              ++  A+EI    +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT
Sbjct: 445 NLALYQDAYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT 504

Query: 900 TYYLR 904
            YY+R
Sbjct: 505 LYYIR 509


>gi|251797996|ref|YP_003012727.1| ribonucleoside-diphosphate reductase, subunit alpha [Paenibacillus
           sp. JDR-2]
 gi|247545622|gb|ACT02641.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           sp. JDR-2]
          Length = 684

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 153/677 (22%), Positives = 272/677 (40%), Gaps = 53/677 (7%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGS 312
               ++  ++          +    +           F    Y+ +   Y  Y +  N  
Sbjct: 35  LREKLDYLIENDFYENVYDQYTYEQIEAVFTLTESSGFQFESYMAISKFYKDYAMKTNDK 94

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
              + Q    RVA+           +A+     +       +TPT  N+G     ++ SC
Sbjct: 95  SKYLEQYP-DRVAIVALNLGEGDGAKALRIAEAMIEQRLQPATPTFLNAGKSRRGEMVSC 153

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  + D L  I   L     L+K  GG+  + + +RG G  I G  G ++GV+P LK+ 
Sbjct: 154 FLLEMDDSLNSINYVLGTCMQLSKIGGGVAVNLSKLRGRGEAIKGVEGAAKGVMPVLKLM 213

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D     +Q G+RKG+   Y   +  D+ EFLD +K   D++ R   ++    IP+ F +
Sbjct: 214 EDAFSYADQMGQRKGSGAGYYNIFGWDIIEFLDCKKINADEKTRIKTLSIGLIIPNKFYE 273

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +N    +F P  V   +D +  + +     YE      ++     ++A  +  K+ +
Sbjct: 274 LAAKNETLYVFGPHSVHKAYDKHLDDMD-MDVMYEELLANDKVVKKAVMNARDMMTKIAS 332

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGS 604
           +  E+G+P+I  K   N     + +G V  SNLCTEI         N    +  +    S
Sbjct: 333 IQLESGYPYIMNKSNANRVHALKDIGQVKMSNLCTEIFQVQETSTINDYGMDDVIRRDIS 392

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663
            NL +    N  +  KL  ++   +  L  V D+         +K+N    ++GLG M  
Sbjct: 393 CNLASLNIVNVMERKKLKESVHVGIEALTTVSDVSEIDNAPGVRKANEELHSVGLGAMNL 452

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP 722
                   I Y S EA E A      +++++I  S+E+A+ERGA +  F  S + +G + 
Sbjct: 453 NGFFAKNKIAYESDEAKEFASAFFMMMNYYSIEKSMEIAKERGASFKDFDRSEYAKGTYF 512

Query: 723 IDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
              I        +        M   S   W +LK++V+  G+ ++  +AIAPT +I+ I 
Sbjct: 513 TRYIETDFRPASDSVKELFEGMEIPSPQDWADLKEKVQKNGLYHAYRLAIAPTQSISYIQ 572

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P  +++  ++  +        +L                              
Sbjct: 573 NSTSSVMPIVEHIETRTYANSTTYYPMPYL------------------------------ 602

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
              D    + +A+ ID   LI+     Q+ +DQ  S  L+++   + ++L   Y  A   
Sbjct: 603 -AQDNYFYYKSAYNIDQFKLIDLIWEIQQHVDQGISTVLHVNSNVTTRELARFYIYAAQK 661

Query: 896 GLKTTYYLRSRSATSVE 912
           GLK+ YY R++  +  E
Sbjct: 662 GLKSLYYTRTKRLSVEE 678


>gi|313680374|ref|YP_004058113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
 gi|313153089|gb|ADR36940.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
          Length = 961

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 133/600 (22%), Positives = 234/600 (39%), Gaps = 91/600 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428
           +  V DD+ GI  A  E A LA        D++ +R  GA +  + G + G + +L    
Sbjct: 202 VIVVRDDMGGIMDAAAEAARLALAGEEPRVDFSQLRHEGAEVKSSGGTASGPVSYLLEIY 261

Query: 429 ---------------------KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                                 V       V QGG R+GA  A ++  H DV +FL  + 
Sbjct: 262 DNFLEWANRGGPDAGPVATLRYVYAPVLRVVRQGGTRRGAGMATIDVAHPDVLDFLTAKD 321

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              +         N +    D F++ + ++  W +            Y +  E AY    
Sbjct: 322 LDREAAEGDISTFNISILATDAFVEALEKDELWPVRLR---PVPGKYYLQPVEGAYTGEW 378

Query: 527 ------RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577
                     R        + A  +W ++    + TG P + F D  N +S  + +G   
Sbjct: 379 PELGVAEDGARPVPVYEGGVPARWIWHEVAWHAWATGEPGLIFIDRVNEKSALKGLGERW 438

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637
            + ++N C EI L         C+LG++NL A+  +  FDY+     +RTAVR LDNV+D
Sbjct: 439 QIRATNPCGEIPLTVG----EPCDLGALNLAAYVEDGAFDYEAFRRDVRTAVRFLDNVLD 494

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +N   +E  ++++   R +GLG+MG   AL  + +PY S  A E   + M  +   A++A
Sbjct: 495 VNVFALEDNREASQQLRRLGLGVMGLADALIKMGLPYDSEAAREAVWKIMSVMREEALAA 554

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S  L  ERG +  ++      G   I                                  
Sbjct: 555 SEALGAERGVFPLYEEEAEYFGRMGIKP-------------------------------- 582

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN--------- 808
            RN   + +APT T + + GVS  I+P +     +        +V+              
Sbjct: 583 RRNLAVLTVAPTGTTSMLMGVSSGIEPVFSPFVWRRIGGEYKPLVHPLFQELMEQHPPHP 642

Query: 809 ELKQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-- 865
           + ++   WD + +I+ ++ + GS+  +E +P+ ++ +   A ++ P+  +      Q+  
Sbjct: 643 DWEKDGTWDWDKLIAAIQENHGSVQGLEVVPESIRAVFKCAHDVSPLDHVRMQGVVQRAF 702

Query: 866 ----WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
               ++  + S  + L  E S + ++  Y +A+  G K     R  S      S  K  +
Sbjct: 703 DAEGYVGNSLSKTINLPHEASVEDVEAAYTEAYRTGCKGVTVYRDGSRDYQVLSVTKEEE 762



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 39/186 (20%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFH 350
           F+     I   +Y    +G         F RVA  +AL E E  +   A  FY L+++  
Sbjct: 6   FDEHAKAIAERQYLQPGDGDVF----GIFRRVADWVALPEDEATRSGWADTFYELMATKR 61

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDL----YGIFGALQENAMLAKYSGGLGNDWTP 406
           F      L  +GT H  + +CF+            GI    ++ A++ K  GG G +  P
Sbjct: 62  FCPGGRVLAGAGTAHGNVLNCFVQGATAHPPASFEGIMEVAKKLALVTKVGGGNGVNLDP 121

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
                  +    G                              AY++  H DVE+F+   
Sbjct: 122 YVYRERPVGVVRG-----------------------------IAYMDAAHRDVEDFIRGL 152

Query: 467 KNTGDD 472
               ++
Sbjct: 153 MRPSNN 158


>gi|57014144|gb|AAT68709.2| ribonucleoside reductase alpha subunit [Borrelia hermsii]
          Length = 690

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 165/731 (22%), Positives = 306/731 (41%), Gaps = 84/731 (11%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           ++ K+  Y        L     EV           ++  +     LY +++  Y E  + 
Sbjct: 11  MVLKDGFYRLEKDLEALSVFLEEVKAKSLRFSNPNERMHYLIDNNLYEDFYKNYSEAQIL 70

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                  + +F      +  K+ +D+A +  G     D Y                  +A
Sbjct: 71  EIYKLVELENFKFKSYMSASKFYKDYALKLNG-----DTYLESYEDRI----------IA 115

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + L L +   E  A++  + +    +  +TPT  N+G R   +L SCFL  V D L  I 
Sbjct: 116 VSLFLADGCFE-FALKLASEMIKQRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSIT 174

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             +     L+K  GG+  + + +R  G  I G    ++G+IP +K+  D     +Q G+R
Sbjct: 175 FNISSAMQLSKIGGGVALNLSNIRARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA   YL  +H D+E+FLD +K   D++ R   ++    IPD F +   Q   +  F+P
Sbjct: 235 KGAGAVYLNIFHYDIEDFLDTKKINADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAP 294

Query: 505 DEVSDLHDLYGK--EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             +      +    +F++ Y             + ++I A  +  ++  + FE+G+P+I 
Sbjct: 295 YSLYKATGRFMNEIDFDLEY----DLLASNPNILKKEIKARDMLVRIARLQFESGYPYIM 350

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAH 610
           ++  CN+ +P + +G +  SNLCTEI    +                  C LGS+N++  
Sbjct: 351 YQTACNLNNPLKGIGKIKMSNLCTEIFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIVNV 410

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             +N         T+  A++ L +V D  +        K+N+ + A+GLG+M     L  
Sbjct: 411 VNSN------FEYTVDIAMQALTSVCDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIK 464

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             IPY S EA++        ++F++I +S+ +A+ R   +  FK S +  G +    +  
Sbjct: 465 NKIPYESAEAIDFVRTFFMLLNFYSIKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTE 524

Query: 729 LAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               + E+       +    +  W+ LK+ V+  G+ ++  +A+APT +I+ I   + S+
Sbjct: 525 DFSPKTEVVKGIFSGIKIPLKSDWENLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSL 584

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  +   +        +L                                 +  
Sbjct: 585 MPIVEPVEARVYGNSTTYYPMPYLSK-------------------------------ENA 613

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
               +A+ +D   LI+  S  Q+ +DQ  S  LY+ +E S ++L  +Y  A   GLK+ Y
Sbjct: 614 LFFKSAYYMDMRKLIDLISEAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLY 673

Query: 902 YLRSRSATSVE 912
           Y R+++ +  E
Sbjct: 674 YTRNKNLSVDE 684


>gi|74316076|ref|YP_313816.1| ribonucleoside-diphosphate reductase subunit alpha [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055571|gb|AAZ96011.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 600

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 150/602 (24%), Positives = 255/602 (42%), Gaps = 62/602 (10%)

Query: 321 FMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT-TVP 377
           + RVA  +A  E   +   A  FY LL  F F+     L  +G+ H   L +CF+   + 
Sbjct: 32  WQRVAQAVAQAEVDARALWADRFYALLDDFRFLPGGRILAGAGSGHRVTLFNCFVMGEIA 91

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           DD+  IF AL+E A+  ++ GG+G D++ +R  G     T   + G + F+ + +     
Sbjct: 92  DDIEDIFEALKEGALTMQHGGGVGYDFSTLRPAGTIAQATGTIASGPVSFMHIWDAMCAT 151

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
           V   G R+GA+ A L   H D+E F+D ++    D       N +  + D F+  V  +A
Sbjct: 152 VLSTGARRGAMMATLRCDHPDIEAFVDAKR----DPAVLRHFNLSVQVSDAFIAAVDADA 207

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            W L  P  + D     G        ++         +V R + A ALW+++L   ++T 
Sbjct: 208 DWPLVFP--LRDGEPADGAVVR---RHWTGSTTAVPCRVLRTVRARALWQRILRAAYDTA 262

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-----LAHFA 612
            P + F D  N  +       + ++N C EI L +       C+LGS+NL         A
Sbjct: 263 EPGVLFVDTINRDNTLAGRETLTTTNPCGEIPLPAY----GACDLGSLNLTAFVVAPFAA 318

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
           + + D   L      AVR LD+VID++ + ++   +     R IGLG+ G   AL LL +
Sbjct: 319 DARLDLAALGDAAALAVRFLDDVIDVSRYPLQAQAREARFKRRIGLGITGLADALVLLGL 378

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            Y S  A ++A+ +M  +   A  AS++LA+E+G + + + S                  
Sbjct: 379 DYDSEPARQLAERAMRTVRDAAYRASIDLAREKGGFPALERS------------------ 420

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYV 791
                 +  +     E++  +   G+RNS+ +AIAP  TI+ +    S  I+P +     
Sbjct: 421 --AFLASGFAGRLPPEIRDGIARDGIRNSHLLAIAPAGTISLLANNLSSGIEPIFAAEAS 478

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +             L  +   R          L    G +G    + +        A ++
Sbjct: 479 RRI-----------LQPDGSYRSHAVSDYACLLWRAHGGVGQPPALVE--------AQQL 519

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           DP+  +   +  Q  +D A S  + +  + +  + + +YRQA  +GLK     R    T 
Sbjct: 520 DPVAHLAMQAALQPAVDNAISKTINVAADIAFARFEALYRQAHALGLKGCTVFRPNPVTG 579

Query: 911 VE 912
             
Sbjct: 580 AI 581


>gi|306830971|ref|ZP_07464133.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426994|gb|EFM30104.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 719

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 149/714 (20%), Positives = 275/714 (38%), Gaps = 82/714 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +++           +  +     I+                +  LA DL+ + 
Sbjct: 32  KEALRAFFRENVIPNSMAFDTIIDK-INYLIDNDYIEPEFISKYTPDFIESLAKDLQAQG 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347
                ++     Y +Y L  N  +   E  +    R+           E+ A +    + 
Sbjct: 91  FRFKSFMAAYKFYQQYALKTNDGKYYLESIED---RILFNALYFADGNEELARDLATEMI 147

Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
              +  +TP+  N+  +R  +  SCFL +V DD+  I  ++     L++  GG+G   + 
Sbjct: 148 HQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  +
Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           K   D++ R   ++    +PD F +    N    LFSP  V   + +    +      Y+
Sbjct: 268 KENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGV-PYSYVDITAEYD 326

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +      I   + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+
Sbjct: 327 KMVANPNIVKTK-IRARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383

Query: 587 EITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
           E+    +                  CNLGS N++    +          +I+   R L  
Sbjct: 384 EVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSP-----DFGRSIKAMTRALTF 438

Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           V D  +   +   K  N      GLG MG  + L   HI Y SPE++E  +     +++ 
Sbjct: 439 VSDTSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYW 498

Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746
            +  S  +++E +  +  F+ S +  G +    I      + +            S   W
Sbjct: 499 TLVESNHISRERQQTFVGFENSKYADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDW 558

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805
            +L+  V T G+ + N +A+AP  +I+ I  VS S+ P  Q +  +     G        
Sbjct: 559 AKLRDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP--- 615

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                                          +  D    + +A+++D   +I+  +   +
Sbjct: 616 ----------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATE 647

Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
            +DQ  SL L+L               + + + L  +   A+   +K+ YY+R+
Sbjct: 648 HVDQGLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKDIKSIYYIRT 701


>gi|85726185|gb|ABC79615.1| ribonucleotide reductase alpha subunit [Borrelia hermsii DAH]
          Length = 690

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 165/731 (22%), Positives = 305/731 (41%), Gaps = 84/731 (11%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLT---TVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           ++ K+  Y        L     EV           ++  +     LY +++  Y E  + 
Sbjct: 11  MVLKDGFYRLEKDLEALSVFLEEVKAKSLRFSNPNERMHYLIDNNLYEDFYKNYSEAQIL 70

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                    +F      +  K+ +D+A +  G     D Y                  +A
Sbjct: 71  EIYKLVEFENFKFKSYMSASKFYKDYALKLNG-----DTYLESYEDRI----------IA 115

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384
           + L L +   E  A++  + +    +  +TPT  N+G R   +L SCFL  V D L  I 
Sbjct: 116 VSLFLADGCFEL-ALKLASEMIKQRYQPATPTFLNAGKRVRGELVSCFLLEVGDSLNSIT 174

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             +     L+K  GG+  + + +R  G  I G    ++G+IP +K+  D     +Q G+R
Sbjct: 175 FNISSAMQLSKIGGGVALNLSNIRARGEEIRGICNIAKGIIPVMKLLEDGFNYADQMGQR 234

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           KGA   YL  +H D+E+FLD +K   D++ R   ++    IPD F +   Q   +  F+P
Sbjct: 235 KGAGAVYLNIFHYDIEDFLDTKKINADEKSRVQTLSLGVIIPDKFFEIAKQGQSYYAFAP 294

Query: 505 DEVSDLHDLYGK--EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             +      +    +F++ Y             + ++I A  +  ++  + FE+G+P+I 
Sbjct: 295 YSLYKATGRFMNEIDFDLEY----DLLASNPNILKKEIKARDMLVRIARLQFESGYPYIM 350

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAH 610
           ++  CN+ +P + +G +  SNLCTEI    +                  C LGS+N++  
Sbjct: 351 YQTACNLNNPLKGIGKIKMSNLCTEIFQIQTPSIIGDYGEGDLIGYDVSCILGSLNIVNV 410

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             +N         T+  A++ L +V D  +        K+N+ + A+GLG+M     L  
Sbjct: 411 VNSN------FEHTVDIAMQALTSVCDKTDIKNAPSISKANNDYHAVGLGVMNLHGFLIK 464

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             IPY S EA++        ++F++I +S+ +A+ R   +  FK S +  G +    +  
Sbjct: 465 NKIPYESAEAIDFVRTFFMLLNFYSIKSSMNIAKTRGKTFKDFKQSEYYNGNYFNMYLTE 524

Query: 729 LAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               + E+       +    +  W+ LK+ V+  G+ ++  +A+APT +I+ I   + S+
Sbjct: 525 DFSPKTEVVKGIFSGIKIPLKSDWESLKRDVQMHGLYHAYRLAVAPTQSISYIQNATTSL 584

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P  + +  +   +        +L                                 +  
Sbjct: 585 MPIVEPVEARVYGNSTTYYPMPYLSK-------------------------------ENA 613

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
               +A+ +D   LI+  S  Q+ +DQ  S  LY+ +E S ++L  +Y  A   GLK+ Y
Sbjct: 614 LFFKSAYYMDMRKLIDLISEAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLY 673

Query: 902 YLRSRSATSVE 912
           Y R+++ +  E
Sbjct: 674 YTRNKNLSVDE 684


>gi|308068542|ref|YP_003870147.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
 gi|305857821|gb|ADM69609.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Paenibacillus polymyxa E681]
          Length = 694

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 151/680 (22%), Positives = 275/680 (40%), Gaps = 61/680 (8%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGSRIEM 316
           +   ++          +    + +       + F    Y+     Y  Y +  N  ++ +
Sbjct: 49  VLYMIENDYYENFYNSYTADEINDIFHITHSYNFKFPSYMAASKFYTDYAMKSNDRKVYL 108

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
            + +  RVA             A      +       +TPT  N+G     +L SCFL  
Sbjct: 109 -EHYPDRVAAVALHLGRGNADTARLLSRSMMEQRLQPATPTFLNAGKSRRGELVSCFLLE 167

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  I   L     L+K  GG+  + + +R  G  I G  G ++G++P LK+  D  
Sbjct: 168 MDDSLNSINYVLNTCMQLSKIGGGVAVNLSKLRARGEAIKGVEGAAKGIMPVLKLMEDGF 227

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +Q G+RKG+  AY   +  DV EFLD +K   D+R R   ++    +P+ F K    
Sbjct: 228 SYADQMGQRKGSGAAYYNIFGWDVLEFLDSKKINADERVRLKTLSIGLLVPNRFYKLAQD 287

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI--SAVALWRKMLTML 553
           N    +F+P  V      YG   +    +        + +V +KI  SA  +  K+  + 
Sbjct: 288 NEPLHVFAPYSV---FKAYGTHLDDMNLDEMYDTLLADDRVKKKIAMSARDMLTKIAMIQ 344

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSIN 606
            E+G+P+I  K   N     ++VG V  SNLCTEI     + E              S N
Sbjct: 345 LESGYPYIMNKSNANQAHALKNVGQVKMSNLCTEIFQLQETSEITDYGQQDTIRRDVSCN 404

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQS 665
           L +    N  ++ K+  ++   +  L +V D+          K+N    ++GLG+M    
Sbjct: 405 LASLNIVNVMEHGKIRESVHEGMIALTSVSDMTQVANAPGVAKANREMHSVGLGVMNLHG 464

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPID 724
                 I Y S EA +        +++H+I  S+E+A+    ++  F+ S +  GV+   
Sbjct: 465 YFAKNKIAYESNEAKDFVRTFFMTMNYHSIEKSMEIAKAAGQSFYGFEESDYATGVYFDR 524

Query: 725 SIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +          + E+   + +  ++   WD+LK  V   G+ ++  MAIAPTA+I+ I 
Sbjct: 525 YLNTDYRPITARVQELFKGIYVPTSA--DWDKLKADVMKNGLYHAYRMAIAPTASISYIQ 582

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P  + +  ++  +        +L  +                           
Sbjct: 583 NATSSVMPIVEQIETRTYANSTTYYPMPYLQKD--------------------------- 615

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
                   + +A+++D   +++  +  Q  +DQ  S  L+++ + + ++L   Y  A   
Sbjct: 616 ----NLFFYKSAYQMDQFKVLDLIAEIQPHVDQGISTVLHVNSDVTTRQLARCYLYAAHK 671

Query: 896 GLKTTYYLRSRSATSVEKST 915
           GLK+ YY R++  +  E  T
Sbjct: 672 GLKSLYYTRTKKLSVEECLT 691


>gi|289444614|ref|ZP_06434358.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis T46]
 gi|289417533|gb|EFD14773.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium
           tuberculosis T46]
          Length = 726

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 159/655 (24%), Positives = 266/655 (40%), Gaps = 71/655 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 71  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
                            + +  A+EI    +I++ +   + +DQ  SL L+  + 
Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDT 681


>gi|86742189|ref|YP_482589.1| ribonucleoside diphosphate reductase, B12-dependent [Frankia sp.
            CcI3]
 gi|86569051|gb|ABD12860.1| Ribonucleoside diphosphate reductase, B12-dependent [Frankia sp.
            CcI3]
          Length = 1281

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 106/576 (18%), Positives = 208/576 (36%), Gaps = 27/576 (4%)

Query: 367  QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
            ++ +CF+ +V D +  I    +E  ++ K   G G + + +R     +    G + G + 
Sbjct: 446  RVHNCFILSVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVS 504

Query: 427  FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F++ A+ +A  +  G   R+ A    L+  H D+ EF++ +    D  R   D      +
Sbjct: 505  FMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAREEDKIRALRDAGFDMDL 564

Query: 486  PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
                +  V            +      + G  F++          R + +V   + A  L
Sbjct: 565  GGRDIASVQYQNANNSVRVTDEFMRAVVDGGGFDLR--------ARLDGRVLETVDARGL 616

Query: 546  WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
            +  +    +    P I +    N        G + +SN C+E        + + CNL S+
Sbjct: 617  FHTIAEAAWACADPGIQYDGTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASL 672

Query: 606  NLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
            NLL     ++ FD +   + +   +  +D  I        +  + +  +R +G+G     
Sbjct: 673  NLLKFLRPDRSFDAEAFVAAVELIITAMDISICFADFPTPEITRVSRAYRQLGIGYANLG 732

Query: 665  SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
            + L      Y S     +A      ++  A   S ELA   GAY  F  +          
Sbjct: 733  ALLMASARAYDSDGGRALAASITSLMTATAYRRSAELAGIVGAYDGFARNADAHRRVMRK 792

Query: 725  SIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                   VR   A +      +   W   +   +  G RN+    +APT TI       +
Sbjct: 793  HAAANDAVRSVHAEDSRILAVASREWARAQTVGEKHGWRNAQASLLAPTGTIGLAMDCDT 852

Query: 780  QSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836
              I+P    + +K  + G    +VN  +   L+     +E + + ++Y    G + +   
Sbjct: 853  TGIEPDLALVKMKKLVGGASMRIVNQTVPAALQALGYPEETIEAIVEYIAEYGHVIDAPG 912

Query: 837  IPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
            +  +  ++   A     I PM  +   +  Q ++  A S  + +    +  +++ IY + 
Sbjct: 913  LRPEHYEVFDCAIGERAISPMGHVRMMAAVQPFLSGAISKTVNMPSTATVAEVEQIYLEG 972

Query: 893  WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
            W +GLK     R         + +KG          
Sbjct: 973  WRLGLKALAIYRDNCKVGQPLTDVKGAKQAAELAAT 1008


>gi|297565747|ref|YP_003684719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus silvanus DSM 9946]
 gi|296850196|gb|ADH63211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus silvanus DSM 9946]
          Length = 1014

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 143/626 (22%), Positives = 246/626 (39%), Gaps = 95/626 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428
           +  VPDD+ GI    ++   +A        D++ +R  G  I G+ G S G + FL    
Sbjct: 211 VLEVPDDMGGIIDTARDAVAMAGKGQEPHVDFSLLRPEGTPIKGSGGTSSGPVSFLLEIF 270

Query: 429 ---------------------KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                                 V +     V QGG R+GA  A L   H D+ +FL  + 
Sbjct: 271 DNFLEWGNLGAEKSGPVATLRYVYSPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKD 330

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              +         N +  + + F   +  +  W    P EV   +  Y  + E  Y    
Sbjct: 331 LDREAAEGDISTFNISILVTEAFWNTLQADGLW-AVEPAEVPGKYYPYLVQGE--YTGAL 387

Query: 527 RQADRGEIKVFR-------KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-- 577
            +    E+   R       K+ A  LW ++    + TG P + F D  N  S  +H+G  
Sbjct: 388 PELPDREVDGARAIPVYEGKVPAKWLWHEIAWHAWATGEPGLIFVDRINELSALKHLGER 447

Query: 578 -VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNV 635
             + ++N C EI L         C+LG+INL A+   ++ FDY    + +RT +R LDNV
Sbjct: 448 YRIRATNPCGEIPLTVG----EPCDLGAINLAAYVREDKTFDYATFRADVRTCIRFLDNV 503

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           +D+N   +E  + ++ + R +GLG+MG   AL  + +PY+S E  +   + M  +   AI
Sbjct: 504 LDVNVFALEDNRIASQSLRRLGLGVMGLADALIKMGLPYSSEEGRQAVAKIMNAMREEAI 563

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            AS  L +ERG +  +                                  + E++ R   
Sbjct: 564 LASERLGEERGVFPIYAQHP----------------------------EKFPEIRPR--- 592

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ--- 812
              RN   + +APT T + + GVS  I+P +     +        +++   V ++++   
Sbjct: 593 ---RNVAVLTVAPTGTTSMLMGVSSGIEPMFSPFMWRRIGGQYKALLHPLFVEQMEKYPP 649

Query: 813 ------RDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
                    WD + +I  ++ H GS+  IE IP +++ +   A ++ P+  +      Q+
Sbjct: 650 TPPFEKEGAWDWDKLIEAIQAHHGSVRGIEGIPTEIQAVFEGAHDVPPLDHVRMQGVVQR 709

Query: 866 WID------QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             D       + S  + L    +   ++  Y +A+L G K     R  S      S  K 
Sbjct: 710 AFDAFGLAANSLSKTINLPNQATVADVEAAYTEAYLTGCKGITVYRDGSRDLQVLSVSKS 769

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSC 944
              + N    T    +      P++ 
Sbjct: 770 EKKETNESTHTVVQPALLEPPTPATA 795



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 32/179 (17%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
            F+     I   +Y    +G  +      F RVA  +A  E    +   + EF+ L++S 
Sbjct: 7   HFDDHAQAIARRQYLQESDGDVL----GMFRRVADWVAGAEKPEARAYWSEEFFRLMASK 62

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN----AMLAKYSGGLGNDWT 405
            F      L  +GTRH  + +CF+    ++    F  + E     A++ K  GG G +  
Sbjct: 63  RFCPGGRVLAGAGTRHGNVLNCFVQGATENDPSSFNGVLEVAKKLALVTKVGGGNGVNLD 122

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           P            G  + V  F                      AYL   H DV++F+ 
Sbjct: 123 PYPPRHGGAGKAAGPRRTVRGF----------------------AYLRADHPDVQDFIQ 159


>gi|307151332|ref|YP_003886716.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp.
           PCC 7822]
 gi|306981560|gb|ADN13441.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 7822]
          Length = 1105

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 133/453 (29%), Positives = 230/453 (50%), Gaps = 24/453 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             K++++  +G+  + N  ++  +VE AC+G +DV+   + +     + +G++  +++  
Sbjct: 34  HSKIQVIKRNGSNAALNVAKIREVVEWACAG-KDVNPIALEAGLTTRLRNGITTREIQDN 92

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +  +   +EP++  V  R  +  L ++VL         A        Y +     I
Sbjct: 93  LINCALEMCSPEEPDWRYVAGRLHIWSLWKDVL---------AARGYQYGDYEQTVKTKI 143

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E  +  + +       +L    + +  + D  ++Y G  +L  RY L       E+PQ  
Sbjct: 144 ENKLYDQRIL-VYSSQELQEAGSWINSDWDTDYDYAGAVLLTSRYLLPH-----ELPQEA 197

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
            +  A+ LA  E    + K A +FY  ++      +TP L N    +  L+SCF++ + D
Sbjct: 198 LLTCALLLASVETPENRLKWARKFYEAIAKRQVSLATPILANLRIPNGSLTSCFISALDD 257

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  IF  +   A ++K  GG+G + + +R  G+ +      S GVIP++K+ NDTA+AV
Sbjct: 258 NLESIFSEIANTARISKNGGGVGINVSRIRATGSWVMNKPNASGGVIPWIKILNDTAIAV 317

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     I D FM+RV     
Sbjct: 318 NQGGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVITDEFMRRVIHKQD 377

Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P EV      +L +L+G+EFE  Y   E      EI ++++++A  L++ ++   
Sbjct: 378 WTLVDPYEVRTKFGIELAELWGEEFEKVYAKIEAAILNEEILLYKRVNARELFKHIMRSQ 437

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            ETG P++ FKD  N  +P +H G +   NLC 
Sbjct: 438 LETGMPYLAFKDTINRANPNKHEGYIPGVNLCV 470



 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 147/357 (41%), Gaps = 63/357 (17%)

Query: 565  DPCNIRSPQQHVGVVHS--SNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKL 621
            D      P +H+G+ +   +  CTE   N    +E+  CNL S+NL         +  +L
Sbjct: 778  DTYCFNEPLRHLGMFNGILTGQCTESFSNVKPGQESHCCNLISLNLANL------EESEL 831

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            A   + +VR+LDN ID+     E AK  N+ +R IG+G MG    L    + Y   E + 
Sbjct: 832  AEACKISVRLLDNTIDLTYPPFEAAKHHNNLYRTIGVGCMGLADWLAKRRLSY---EHLT 888

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
                  E I +    +S+ELA+ERGAY+ F+GS W +G        + ++  +    N  
Sbjct: 889  HISHLFEEIGYWCTHSSMELAKERGAYTCFEGSDWSKGQL------IGSKPVEWFLENAH 942

Query: 742  SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                W +L   ++  G+RNS+  AIAP  + + + G + S+ P Y   +      G   +
Sbjct: 943  HPERWAKLAADIQQYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPI 1002

Query: 802  VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               +      +   W                     P++  K++      D   ++++ +
Sbjct: 1003 APPY-----IKESFW-------------------FYPEN--KVY------DQNKVVKAIA 1030

Query: 862  RRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLMGLKTTYYLRS 905
              Q+WID   S+    NL       E        K +      AW  G K  YY+R+
Sbjct: 1031 VMQQWIDTGISMELLFNLNGGVYFPEDPERFLKAKDIYDTLILAWQEGCKAIYYIRT 1087


>gi|260202189|ref|ZP_05769680.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium
           tuberculosis T46]
          Length = 694

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 159/655 (24%), Positives = 266/655 (40%), Gaps = 71/655 (10%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311
            E     I E    R + +      +  L +    ++     +LG    Y  Y L   +G
Sbjct: 39  DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98

Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369
            R  E  +   + VA+ LA  +      A    + +    F  +TPT  NSG +   +  
Sbjct: 99  KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SCFL  V D++  I  ++     L+K  GG+    T +R  GA I     +S GVIP +K
Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +N    LFSP    D+  +YG  F       +      + ++ +  I A   ++ 
Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI               +   +
Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655
              CNLGS+N+         D    A TI  A+R L  V D  +  ++   ++ N+   A
Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714
           IGLG M     L    I Y S E ++  +     + +HA+ AS  +A ERG  +  F+ S
Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505

Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  G F       + E +         +  +   ++  W  LK+ V+  G+ N N  A+
Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            PT +I+ I   + SI P    + ++     G       ++ N+                
Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
                            + +  A+EI    +I++ +   + +DQ  SL L+  + 
Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDT 649


>gi|294083957|ref|YP_003550714.1| putative ribonucleoside-diphosphate reductase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663529|gb|ADE38630.1| putative ribonucleoside-diphosphate reductase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 573

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 138/618 (22%), Positives = 243/618 (39%), Gaps = 106/618 (17%)

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAK 395
              +F ++L +  F+ +          R     +CF++ V  D +  I     E A   +
Sbjct: 49  HFEDFKDVLRNMRFLPAGRVQNAMGAARQTTAFNCFVSGVIGDSMESIMQRATEAAETMR 108

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G D++ +R  G  I     KS G + F+ + +     +   G R+GA    L   
Sbjct: 109 RGGGIGYDFSRLRPRGDRIKSLESKSSGPVSFMGIFDSVCQTIASSGHRRGAQMGVLRID 168

Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           H D+E+FL   K+  D   +    N +  + D FM  + Q                   G
Sbjct: 169 HPDIEQFL-TAKHNSD---KLTGFNISIGVTDEFMMHLQQ-------------------G 205

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           K F + Y          + + ++++   ALW  ++   ++   P + F D  N  +   +
Sbjct: 206 KPFPLKY----------DGRTYKEVDPEALWDMVMRSTWDWAEPGVLFIDQINRLNNLWY 255

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLD 633
              + ++N C E  L +       C LGS NL+ +       F+ D+  + IRT VR +D
Sbjct: 256 CETIEATNPCGEQPLPAY----GACLLGSFNLVKYVNMEEKMFNLDQFEADIRTVVRAMD 311

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           NVID   + + + +      R +GLG+    +A  +L +PY SPE ++  + +++ +  +
Sbjct: 312 NVIDRTIYPLPEQEAEAKAKRRMGLGVTALANAGEMLGLPYGSPEFMDFTETTLKALRDY 371

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A   S +LA E+GA+  F    + QG    + I  L +                 +++++
Sbjct: 372 AYDTSADLAHEKGAFPLFDPVKYPQG----EFIQQLPKD----------------IQEKI 411

Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
              G+RNS+  +IAPT TI+     VS  I+P +   Y ++    D   +          
Sbjct: 412 GAYGIRNSHLTSIAPTGTISLTADNVSSGIEPPFSLYYDRTIQQFDGHQI---------- 461

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
                   + D  +  G +               TA EI     +   +  Q+++D A S
Sbjct: 462 ------ERVEDYAFTQG-VSG------------RTANEISAEEHLSVLAMAQQYVDSACS 502

Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
               + D+ S      +Y +AWL G K     R+               G LN V   D 
Sbjct: 503 KTCNVGDDVSYDDFKNLYMKAWLSGCKGITTFRAAGL----------RYGILNEVKPADN 552

Query: 932 NSSTHSLGIPSSCTSDTE 949
           ++         +C  D E
Sbjct: 553 DNQPK----AEACFIDPE 566


>gi|293572391|ref|ZP_06683372.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E980]
 gi|291607540|gb|EFF36881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E980]
          Length = 827

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 171/815 (20%), Positives = 304/815 (37%), Gaps = 130/815 (15%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           +R ++  L R     +  K    T  ++  L      +Y   G+        + + +   
Sbjct: 36  SRLIM--LDRYAFKDMSGKT--LTVGDLVILTTHADPQYPARGI------GKIEEINKEQ 85

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMGLALKETEK 335
           L   ++ E   +      + +     +       E P   +      RVA G++  E EK
Sbjct: 86  LIIRIEEEFQSSLTNP--EEIASGRVIRNINEV-EKPLELYFEQIAARVARGISDIEGEK 142

Query: 336 E-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAM 392
           + +   EFY  L+  + + +   L+ +GT       +C++   + D   G+    QE   
Sbjct: 143 KAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVME 202

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           +    GG+G + + +R   A +HG NGKS G + +L    +    V QGG R+GA    L
Sbjct: 203 IMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIML 262

Query: 453 ETWHIDVEEFL--------------------------------DLRKNTGDDRRRTHDMN 480
             WH D+ EF+                                +       +       +
Sbjct: 263 NDWHPDIFEFIISKIQNPAILQNLIHTSQSPIVRQLASEKLTFEPLIANEKEWLEYLVDH 322

Query: 481 TANWIPDLFMK----RVTQNAGWTLFSPD----------------EVSDLHDLYGKEF-- 518
             N + D F+K    ++     +++  PD                E  +    Y   F  
Sbjct: 323 PTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGANISVCLTKEFMEAVETDQTYELRFPA 382

Query: 519 ------EIAYENYERQADRGEIKVF----RKISAV------ALWRKMLTMLFETGHPWIT 562
                     +  +   + G+++ +    RK+          LW  +      +  P I 
Sbjct: 383 IEDYDASEMADYDQHWMEIGDVREWAETGRKVKIHQTIKARELWDLITYCATYSAEPGIF 442

Query: 563 FKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
           F D  N  +  Q +   V ++N C E  L       AVCNL +INL           D++
Sbjct: 443 FIDNANEMTNAQAYGQKVVATNPCGEQPLTPY----AVCNLAAINLANMVDKETKVVDFE 498

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA  +R +VR  DNVID   +  EK ++     R +GLG+MG    L      Y S + 
Sbjct: 499 KLADVVRASVRFQDNVIDATPYFFEKNEQQAKGERRVGLGVMGLADLLIYCEKVYGSEDG 558

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             + D+  E I+  A   SVELA+E+G++    G           ++     +R     +
Sbjct: 559 NRLVDQVFEKIAVTAYQTSVELAKEKGSFPFLVG----------KTVEETTALRQRFIES 608

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +   + +++ +   G+RNS+ + +APT +   + GVS  ++P +   Y +S   G F
Sbjct: 609 GYMKKMPESIRQAILKYGIRNSHLLTVAPTGSTGTMAGVSTGLEPYFSFSYFRSGRLGKF 668

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN+ +V+E  +++    A                   D+L     +A E+ P   +  
Sbjct: 669 IEVNAEIVSEYLEKNPETAA-------------------DNLPPFFVSAMELSPEAHVSV 709

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               Q+W+D + S  +    E   K++  IY   +  G K        S    +  TL+ 
Sbjct: 710 QCTIQRWVDSSISKTVNAPKEYQVKQVAAIYEDLYQGGAKGGTVYVDGSR-DSQVLTLEA 768

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            D      PV    ++  +L    S  ++  C +C
Sbjct: 769 DDNVFE-EPVVGVVNNQITLDSLESSEAEEICPIC 802


>gi|310641425|ref|YP_003946183.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
 gi|309246375|gb|ADO55942.1| Ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus
           polymyxa SC2]
          Length = 694

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 277/680 (40%), Gaps = 61/680 (8%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGSRIEM 316
           +   ++          +    + +       + F    Y+     Y  Y +  N  ++ +
Sbjct: 49  VLYMIENDYYENFYNSYTADEINDIFHITHSYNFKFPSYMAASKFYTDYAMKSNDRKVYL 108

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
            + +  RVA             A      +       +TPT  N+G     +L SCFL  
Sbjct: 109 -EHYPDRVAAVALHLGRGNADTARLLSRSMMEQRLQPATPTFLNAGKSRRGELVSCFLLE 167

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  I   L     L+K  GG+  + + +R  G  I G  G ++G++P LK+  D  
Sbjct: 168 MDDSLNSINYVLNTCMQLSKIGGGVAVNLSKLRSRGEAIKGVEGAAKGIMPVLKLMEDGF 227

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +Q G+RKG+  AY   +  DV EFLD +K   D+R R   ++    +P+ F K    
Sbjct: 228 SYADQMGQRKGSGAAYYNIFGWDVLEFLDSKKINADERVRLKTLSIGLLVPNRFYKLAQD 287

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI--SAVALWRKMLTML 553
           N    +F+P  V      YG   +    +        + +V +KI  SA  +  K+  + 
Sbjct: 288 NEPLHVFAPYSV---FKAYGTHLDDMDLDEMYDTLLADDRVKKKIAMSARDMLTKIAMIQ 344

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606
            E+G+P+I  K   N     ++VG +  SNLCTEI             ++  +    S N
Sbjct: 345 LESGYPYIMNKSNANQAHALKNVGQIKMSNLCTEIFQLQETSEIADYGQQDIIRRDVSCN 404

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQS 665
           L +    N  ++ K+  ++   +  L +V D+          K+N    ++GLG+M    
Sbjct: 405 LASLNIVNVMEHGKIRESVHEGMIALTSVSDMTQVANAPGVAKANREMHSVGLGVMNLHG 464

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPID 724
            L    I Y S EA +        +++H+I  S+E+A+    ++  F+ S +  GV+   
Sbjct: 465 YLAKNKIAYESNEAKDFVRTFFMTMNYHSIEKSMEIAKAAGQSFYGFEESDYATGVYFDR 524

Query: 725 SIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
            +          + E+  ++ +   ++  WD LK  V   G+ ++  MAIAPTA+I+ I 
Sbjct: 525 YLNTDYRPTTARVQELFKDIYIP--TQADWDTLKADVMKNGLYHAYRMAIAPTASISYIQ 582

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             + S+ P  + +  ++  +        +L  +                           
Sbjct: 583 NATSSVMPIVEQIETRTYANSTTYYPMPYLQKD--------------------------- 615

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
                   + +A+++D   +++  +  Q  +DQ  S  L+++ + + ++L   Y  A   
Sbjct: 616 ----NVFFYKSAYQMDQFKVLDLIAEIQPHVDQGISTVLHVNSDVTTRQLARCYLYAAHK 671

Query: 896 GLKTTYYLRSRSATSVEKST 915
           GLK+ YY R++  +  E  T
Sbjct: 672 GLKSLYYTRTKKLSVEECLT 691


>gi|9628064|ref|NP_042658.1| ribonucleotide reductase large subunit [Equid herpesvirus 2]
 gi|82013697|sp|Q66663|RIR1_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|695234|gb|AAC13849.1| ribonucleotide reductase large subunit [Equid herpesvirus 2]
          Length = 799

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 174/833 (20%), Positives = 294/833 (35%), Gaps = 116/833 (13%)

Query: 204 FSSRTLIEKEPNY-----AKVTARFLLEKLRREVLTTVYKKPQ---KATHHEMQCLYPEY 255
            ++  L    P Y       +  R L++ L +       +  +   +  H  M    P  
Sbjct: 1   MAAAHLGMPVPVYMAEREEDLALRKLIDTL-KISAGWDLEANRMAGRLYHFVMGRRAPVD 59

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-------FEYLGL---QILYDRY 305
              Y+        L + +  F      +     +DF            G+   + +YD Y
Sbjct: 60  TRAYV--TTFGDKLEKGVHRFLWDNARDIDDLCKDFQNGPEYERLISRGMLSAKRMYDTY 117

Query: 306 FLHIN-----GSRIEMPQAFFMRVAMGLA--------------------LKETEKEKRAV 340
            L        G+  E     + R+A                         +         
Sbjct: 118 VLRTEEGGGEGAVYESALQMYARMAAFFTCQCFAYPSLRKTVSEVEGGSGRMESGLDFFA 177

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSG 398
            F+ +L+S    C+TP + ++G R   L+SCF+           +    ++ + L     
Sbjct: 178 YFFKILASQLVSCATPVMRSAGLRQSYLASCFIMNPDMSTEDKTLSAVFRDLSPLLCSKS 237

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G + T                + V   L++ N      N    R  +V AY+E WH  
Sbjct: 238 GVGMNLTNFSSG----------GKNVQSCLRLINSQVEFCNDKNLRPVSVAAYMELWHEQ 287

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGK 516
           +EEFL  +     +  R   +     +P LF +   QN    W LFSP     L  LYG 
Sbjct: 288 IEEFLAAKLPENPE--RCQSIFQGVCVPGLFFRLYEQNPDSQWHLFSPKVGGHLAGLYGD 345

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           +F+  Y    R            + A +L   +++ + +TG P+I  KD  N     +  
Sbjct: 346 KFDEEYARLVRHGL-----YSSSLPAKSLMFALISAIIKTGSPYILSKDAINRHHWFETQ 400

Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------------------- 615
           G  +  +NLC E+        T+ CNL ++ L A                          
Sbjct: 401 GNAISYANLCAEVVQQPHEF-TSTCNLANVCLPACLRARGEGEGAGAAGEGEGADRLSPL 459

Query: 616 -----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                F +D L + +R AV +++  I           +     R+ G+G+ G       L
Sbjct: 460 TPDLEFCFDTLRAAVRAAVYMINASILGGVCPTP-GVRVMQAERSAGIGVQGLADVFAKL 518

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS--FKGSLWDQGVFPIDSIGL 728
              Y   E+  +     E + + A+ AS +L    GA     +K S   +G F  +S G+
Sbjct: 519 GRGYMDAESALLDARIFEVMYYQAVRASNQLVTVGGAPPHANWKNSKLSRGEFHWESWGV 578

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                 +       R  W+EL++ V   G  NS  +A+ PTA  + + G+S+S  P Y N
Sbjct: 579 ------QYDSLFIERQLWEELRESVTKHGTFNSQFIALMPTAGTSQLTGLSESFYPFYAN 632

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  K +   +    N   +  +        + +  LKYH G +  +        +   TA
Sbjct: 633 VSSKVSNKEEVMKPNITFLERV------SPSDVPLLKYHGGDVSKLPPPLAAKYRNFLTA 686

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK---KLDFIYRQAWLMGLKT-TYYLR 904
           F+  P   I  A+ R  ++DQ+QS + +L E + K    +  +      +GLKT  YY R
Sbjct: 687 FDYSPEDQIRRAAARSPFVDQSQSFSFFLKEANVKSASYVKNLILLGHGLGLKTIMYYCR 746

Query: 905 SR---SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
            +   S T++E           + V               + C S   C  CQ
Sbjct: 747 IQKQTSLTALECLQCTESPDSGDGVGGYKGGDEEPRSPEHAQCESPDRCLSCQ 799


>gi|293377855|ref|ZP_06624037.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium PC4.1]
 gi|292643518|gb|EFF61646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium PC4.1]
          Length = 827

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 168/813 (20%), Positives = 296/813 (36%), Gaps = 129/813 (15%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           +R ++  L R     +  K    T  ++  L      +Y   G+        + + +   
Sbjct: 36  SRLIM--LDRYAFKDMSGKT--LTVGDLVILTTHADPQYPARGI------GKIEEINKEQ 85

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMGLALKETEK 335
           L   ++ E   +      + +     +       E P   +      RVA G++  E EK
Sbjct: 86  LIIRIEEEFQSSLTDP--EEIASGRVIRNINEV-EKPLELYFEQIAARVARGISDIEGEK 142

Query: 336 E-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAM 392
           + +   EFY  L+  + + +   L+ +GT       +C++   + D   G+    QE   
Sbjct: 143 KAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVME 202

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           +    GG+G + + +R   A +HG NGKS G + +L    +    V QGG R+GA    L
Sbjct: 203 IMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIML 262

Query: 453 ETWHIDVEEFL--------------------------------DLRKNTGDDRRRTHDMN 480
             WH D+ EF+                                +       +        
Sbjct: 263 NDWHPDIFEFIISKIQNPAILQNLIHTSQSPIVRQLASEKLTFEPLIANEKEWLEYLVDY 322

Query: 481 TANWIPDLFMK----RVTQNAGWTLFSPD----------------EVSDLHDLYGKEF-- 518
             N + D F+K    ++     +++  PD                E  +    Y   F  
Sbjct: 323 PTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGANISVCLTKEFMEAVETDQTYELRFPA 382

Query: 519 ------EIAYENYERQADRGEIKVF----RKISAV------ALWRKMLTMLFETGHPWIT 562
                     +  +   + G+++ +    RK+          LW  +      +  P I 
Sbjct: 383 IEDYDASEMADYDQHWMEIGDVREWAETGRKVKIHQTIKARELWDLITYCATYSAEPGIF 442

Query: 563 FKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
           F D  N  +  Q +   V ++N C E  L       AVCNL +INL           D++
Sbjct: 443 FIDNANEMTNAQAYGQKVVATNPCGEQPLTPY----AVCNLAAINLANMVDKETKVVDFE 498

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA  +R +VR  DNVID   +  EK ++     R +GLG+MG    L      Y S + 
Sbjct: 499 KLADVVRASVRFQDNVIDATPYFFEKNEQQAKGERRVGLGVMGLADLLIYCEKVYGSEDG 558

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             + D+  E I+  A   SVELA+E+G++    G           ++     +R     +
Sbjct: 559 NRLVDQVFEKIAVTAYQTSVELAKEKGSFPFLVG----------KTVEETTALRQRFIES 608

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +   + +++ +   G+RNS+ + +APT +   + GVS  ++P +   Y +S   G F
Sbjct: 609 GYMKKMPESIRQAILKYGIRNSHLLTVAPTGSTGTMAGVSTGLEPYFSFSYFRSGRLGKF 668

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VN+ +V+E  +++    A                   D+L     +A E+ P   +  
Sbjct: 669 IEVNAEIVSEYLEKNPETAA-------------------DNLPPFFVSAMELSPEAHVSV 709

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLK 917
               Q+W+D + S  +        K++  IY   +  G K        S  + V      
Sbjct: 710 QCTIQRWVDSSISKTVNAPKGYQVKQVAAIYEDLYQGGAKGGTVYVDGSRDSQVLTLEAD 769

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
               +   V V D   +  SL    +      C
Sbjct: 770 DNVFEEPVVGVADNQITLDSLESSEAEEICPIC 802


>gi|326914626|ref|XP_003203625.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Meleagris gallopavo]
          Length = 221

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 2/217 (0%)

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +  +    W  LK+++   G+RNS  ++  PTA+ A I G ++SI+P   N+Y +  +SG
Sbjct: 4   VTPSDLWDWKALKEKIAKHGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSG 63

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+ +L +R LW+E M + +  H+GSI NI  IP DLK+++ T +EI    ++
Sbjct: 64  EFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVL 123

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + TL
Sbjct: 124 KMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTL 183

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                +      ++     +   +  S  +  EC +C
Sbjct: 184 NKEKLR-EREKASEEEKERNKAAMVCSLENRDECMMC 219


>gi|304406355|ref|ZP_07388011.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304344413|gb|EFM10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 694

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 150/705 (21%), Positives = 277/705 (39%), Gaps = 51/705 (7%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++         + A        + E     I+       ++       +  +   
Sbjct: 18  FFRLEKDQEAVTAFMEEVAAKSMRFNSFTEQVTYMIQNDFY-EDVYARYTPEQVEEIFAS 76

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
                     Y+     Y  Y +  +   + M +    RVAM           +A     
Sbjct: 77  THGFNFQFSSYMAASKFYTDYAMKSDDRTVYMEKYP-DRVAMVALHLGEGDFDKAKRLAV 135

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +       +TPT  N+G     ++ SCFL  + D L  I   L     L+K  GG+  +
Sbjct: 136 SMMEQRVQPATPTFLNAGKSRRGEMVSCFLLEMDDSLNSINYVLGTCMQLSKIGGGVAVN 195

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +RG G  I G  G ++G++P LK+  D     +Q G+RKG+   Y   +  DV EFL
Sbjct: 196 LSKLRGRGEPIKGVEGAAKGIMPVLKLMEDAFSYADQMGQRKGSGAGYYNIFGWDVMEFL 255

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +K   D++ R   ++    +P+ F +   QN    +F P  +   + ++  + +   E
Sbjct: 256 DSKKINADEKTRLKTLSIGLIVPNKFYELAAQNKPLVVFGPHSIHKAYGVHMDDMD-LDE 314

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       +K    +SA  +  K+  +  E+G+P+I  +   N     + +G +  SN
Sbjct: 315 MYDTLLADERVKKKSIMSAREMLVKIAMIQLESGYPYIMNRSNANKDHALKGIGAIKMSN 374

Query: 584 LCTEITLNSSSEETAVCNLG-------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           LCTEI     + E              S NL +    N  D  K+  ++   +  L +V 
Sbjct: 375 LCTEIFQLQETSEINDYGQSDVIRRDISCNLASMNIVNVMDLGKIKESVHEGIEGLTSVS 434

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D+         +K+N    ++GLG M     L    I Y S EA + A      ++F+++
Sbjct: 435 DMAQIANAPGIRKANEELHSVGLGAMNLNGYLAKNKIAYESEEARDFARTFFMMMNFYSL 494

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWDE 748
             S+ +A++R   +  F+ S +  G +       D     A   +    M+  S   W E
Sbjct: 495 EKSMHIARDRGETFKGFEQSEYANGNYFDRYLSTDFRPQTARALELFGEMHIPSPDDWAE 554

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           LK +V   G+ ++  +AIAPT +I+ I   + S+ P  +++  ++  +        +L  
Sbjct: 555 LKAQVMKHGVYHAYRLAIAPTQSISYIQNATSSVMPVVEHIETRTYANSTTYYPMPYL-- 612

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                          D    + +A+++D   +I+  +   + ID
Sbjct: 613 -----------------------------AQDNYFFYKSAYQMDQFKVIDMIAEISQHID 643

Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           Q  S  L+++ + + ++L   Y  A   GLK+ YY R+   +  E
Sbjct: 644 QGISTVLHVNSDVTTRELSRYYIYAAKKGLKSLYYTRTNRLSVEE 688


>gi|67920554|ref|ZP_00514074.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
 gi|67858038|gb|EAM53277.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
          Length = 1116

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 138/523 (26%), Positives = 249/523 (47%), Gaps = 30/523 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
             K+++   DG+  + N  ++  +V+ AC+  ++V+S  + +     + DG++  +++  
Sbjct: 30  ESKIRVRRRDGSWTALNIVKIRAVVDWACAD-REVNSIALEAGLTTRLRDGITTREIQDN 88

Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           LI  +  +    EP++  +  R  +  L ++ L          +       Y       I
Sbjct: 89  LINCALEMCSPDEPDWRYIAGRLHIWSLWKDTL---------VSRGYQYGNYEIVAKTKI 139

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           +       L       +L    + +  + D  ++Y G  +L  RY L       E+PQ  
Sbjct: 140 DAKQYDNRLLT-YSTAELQEAGSWINPDWDTDYDYAGAVLLTSRYLLDD-----ELPQEA 193

Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           F+  A+ LA  E    +   A  FY  ++      +TP L N       L+SCF+ ++ D
Sbjct: 194 FLTCALLLATVESPENRLPWAKRFYEAIAKGKVSLATPILANLRVPGGSLTSCFILSIDD 253

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +L  IF  +   A ++K  GG+G + + +R  G+ + G N  S GVIP++K+ NDTA+AV
Sbjct: 254 NLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGVIPWIKLLNDTAIAV 313

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           NQGG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     + D FM+RV     
Sbjct: 314 NQGGRRAGAVTVGLDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKEE 373

Query: 499 WTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           WTL  P +V +       +L+G++FE AY   E + DR EI ++++++A  L++ ++   
Sbjct: 374 WTLVDPYQVKEKLGIELAELWGEKFEEAYGLIEAELDR-EITLYKRVNARELFKTIMRSQ 432

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT--EITLNSSSEETAVCNLGS--INLLA 609
            ETG P++ FKD  N  +P +HVG +   NLC   E  + +   + A+ ++    +N+  
Sbjct: 433 VETGMPYLAFKDTINKANPNKHVGYIPGVNLCVAPETKILTDRGQIAIADVAGEKVNIWN 492

Query: 610 HFANNQFDYDKLASTIRTA-VRVLDNVIDINCHTIEKAKKSNH 651
               ++    K         V   +       +  +   + N+
Sbjct: 493 GSEWSEVLVKKTGENQPLLKVHFSNGESLDCTYYHKFHVQENY 535



 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 142/359 (39%), Gaps = 63/359 (17%)

Query: 563  FKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
            + D      P++H+G+   + +       +  +  +    CNL S+NL         + +
Sbjct: 787  YDDTYCFSEPKRHLGMFNGILTGQCTESFSNVTPGKFAHCCNLVSLNLANI------EEE 840

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            +L      +VR+LDN IDI       AK  N  +R +G+G MG    L    + Y   E 
Sbjct: 841  ELDYLCNISVRILDNTIDITNPPFNDAKAHNDRYRTVGVGCMGLADWLAKKGLTY---EN 897

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
            +       E + +     S+ELA+ER  Y++F+GS W +G+       + ++  D    N
Sbjct: 898  ITEISNLFEEVGYWCTHTSMELAKERSPYNAFEGSDWSKGLL------IGSKPVDWFVEN 951

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
             + +  W +L + +KT G+RNS+  AIAP  + + + G + SI P Y   +      G  
Sbjct: 952  ASKKERWVQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYDKWAKGTI 1011

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             +   F      +   W                            +     ++   ++++
Sbjct: 1012 PIAPPF-----IKESFW---------------------------FYHENKTLEQQKVVKA 1039

Query: 860  ASRRQKWIDQAQSL----NLY----LDEP-----SGKKLDFIYRQAWLMGLKTTYYLRS 905
             +  Q+WID   S+    NL       +      + K +      AW  G K  YY+R+
Sbjct: 1040 VATIQQWIDTGISMELLFNLNQGVYFADEPERCLTAKDIFETLLLAWKEGCKAIYYVRT 1098


>gi|293556604|ref|ZP_06675171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E1039]
 gi|291601222|gb|EFF31507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Enterococcus faecium E1039]
          Length = 827

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 171/815 (20%), Positives = 303/815 (37%), Gaps = 130/815 (15%)

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280
           +R ++  L R     +  K    T  ++  L      +Y   G+        + + +   
Sbjct: 36  SRLIM--LDRYAFKDMSGKT--LTVGDLVILTTRADPQYPARGI------GKIEEINKEQ 85

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMGLALKETEK 335
           L   ++ E   +      + +     +       E P   +      RVA G++  E EK
Sbjct: 86  LIIRIEEEFQSSLTNP--EEIASGRVIRNINEV-EKPLELYFEQIAARVARGISDIEGEK 142

Query: 336 E-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAM 392
           + +   EFY  L+  + + +   L+ +GT       +C++   + D   G+    QE   
Sbjct: 143 KAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVME 202

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           +    GG+G + + +R   A +HG NGKS G + +L    +    V QGG R+GA    L
Sbjct: 203 IMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIML 262

Query: 453 ETWHIDVEEFL--------------------------------DLRKNTGDDRRRTHDMN 480
             WH D+ EF+                                +       +       +
Sbjct: 263 NDWHPDIFEFIISKIQNPAILQNLIHTSQSPIVRQLASEKLTFEPLIANEKEWLEYLVDH 322

Query: 481 TANWIPDLFMK----RVTQNAGWTLFSPD----------------EVSDLHDLYGKEF-- 518
             N + D F+K    ++     +++  PD                E  +    Y   F  
Sbjct: 323 PTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGANISVCLTKEFMEAVETDQTYELRFPA 382

Query: 519 ------EIAYENYERQADRGEIKVF----RKISAV------ALWRKMLTMLFETGHPWIT 562
                     +  +   + G+++ +    RK+          LW  +      +  P I 
Sbjct: 383 IEDYDASEMADYDQHWMEIGDVREWAETGRKVKIHQTIKARELWDLITYCATYSAEPGIF 442

Query: 563 FKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619
           F D  N  +  Q +   V ++N C E  L       AVCNL +INL           D++
Sbjct: 443 FIDNANEMTNAQAYGQKVVATNPCGEQPLTPY----AVCNLAAINLANMVDKKTKVVDFE 498

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           KLA  +R +VR  DNVID   +  EK ++     R +GLG+MG    L      Y S + 
Sbjct: 499 KLADVVRASVRFQDNVIDATPYFFEKNEQQAKGERRVGLGVMGLADLLIYCEKVYGSEDG 558

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             + D+  E I+  A   SVELA+E+G++    G           ++     +R     +
Sbjct: 559 NRLVDQVFEKIAVTAYQTSVELAKEKGSFPFLVG----------KTVEETTALRQRFIES 608

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +   + +++ +   G+RNS+ + +APT +   + GVS  ++P +   Y +S   G F
Sbjct: 609 GYMKKMPESIRQAILKYGIRNSHLLTVAPTGSTGTMAGVSTGLEPYFSFSYFRSGRLGKF 668

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
             VNS +V+E  +++    A                   D+L     +A E+ P   +  
Sbjct: 669 IEVNSEIVSEYLEKNPETAA-------------------DNLPPFFVSAMELSPEAHVSV 709

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               Q+W+D + S  +        K++  IY   +  G K        S    +  TL+ 
Sbjct: 710 QCTIQRWVDSSISKTVNAPKGYQVKQVAAIYEDLYQGGAKGGTVYVDGSR-DSQVLTLEA 768

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            D      PV    ++  +L    S  ++  C +C
Sbjct: 769 DDNVFE-EPVVGVVNNQITLDSLESSEAEEICPIC 802


>gi|14590272|ref|NP_142338.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus
            horikoshii OT3]
 gi|3256754|dbj|BAA29437.1| 1291aa long hypothetical ribonucleoside-diphosphate reductase
            [Pyrococcus horikoshii OT3]
          Length = 1291

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/321 (28%), Positives = 156/321 (48%), Gaps = 16/321 (4%)

Query: 595  EETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
             E   CNL SINL             FD+D+ A  I+   + LDN ID+N   + +   +
Sbjct: 859  YEYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVTKYLDNAIDVNKFPLPEIDHN 918

Query: 650  NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
                R IG+G+MG   AL  L IPY S E  +   +  E+++F+A   SVE A+ RG + 
Sbjct: 919  TKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKRRGTFP 978

Query: 710  SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             ++ + + +G  P++                   LPWD+L + +K  G+RN+      PT
Sbjct: 979  LYEKTEYPKGKLPVE----------GFYHPEIWNLPWDKLVEEIKKYGLRNAMVTTCPPT 1028

Query: 770  ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
             +++ I   S  I+P Y  +Y KS   G+F  V+     ELK+R L+ E ++  +  + G
Sbjct: 1029 GSVSMIADTSSGIEPIYALVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYG 1088

Query: 830  SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
            SI  +E IP+D+K++  TA +I  +  + + +  Q W+  + S  + + +E + + +   
Sbjct: 1089 SIQGLEEIPEDMKRVFVTALDIHWLDHLLAQASIQMWLTDSASKTINMINEATVEDVKAA 1148

Query: 889  YRQAWLMGLKTTYYLRSRSAT 909
            Y  A  +G K     R  S +
Sbjct: 1149 YLIAHFLGCKGVTVYRDGSLS 1169



 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 116/566 (20%), Positives = 222/566 (39%), Gaps = 117/566 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V        +R +  +  + +  V R+      
Sbjct: 12  KVMKRDGRIVPFDESRIRWAVQRAMWEV-------GVRDEKKLDEVVKAIVQRI-NELYD 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +    +            
Sbjct: 64  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKRILNKKE--------- 114

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  +    + +SR L
Sbjct: 115 -----------------------LDEIDKRF----------------SINALRVLASRYL 135

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              E      + R L E++   +L  +          +    Y +   R           
Sbjct: 136 KRDENGNIIESPRELFERVA--ILAVIPDLLYDERVFDKDGNYSQDLKRV-------EYY 186

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325
            E   +FD  Y               +G   L   +F  +     E+ +   M+V+    
Sbjct: 187 LEHFEEFDGKY--------------SIGKYKLNKYHFERMVNLYKELAEKGKMKVSIDEF 232

Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
             M    +  + EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 233 LGMLERGEFNKYEKEIDEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 292

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + A++ K  GG G +++ +R  G  +  T G + G + F+ + +  +  + QGG 
Sbjct: 293 MKAAHDVALIQKAGGGTGINFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGV 352

Query: 444 RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           R+GA    LE WH D+E+F+  + KN G +     +++   W  + F++ + +   + L 
Sbjct: 353 RRGANMGILEIWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFLEALKEGKKYPLI 410

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P                              +V R++   +L+ ++  M +    P + 
Sbjct: 411 NPRT---------------------------GEVVREVDPKSLFEELAYMAWAKADPGVI 443

Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCT 586
           F D  N R+  +    G + ++N C 
Sbjct: 444 FFDIINRRNVLKEAKGGPIRATNPCV 469


>gi|14521806|ref|NP_127282.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus abyssi
            GE5]
 gi|5459026|emb|CAB50512.1| nrd inteins containing ribonucleotide reductase [Pyrococcus abyssi
            GE5]
          Length = 2122

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 170/385 (44%), Gaps = 21/385 (5%)

Query: 575  HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAV 629
            H   + +  +           E   CNL SINL             FD+D+ A  I+   
Sbjct: 1667 HHMYISNGFMSHNCGEEP-LYEYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVA 1725

Query: 630  RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E  +   +  E+
Sbjct: 1726 KYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEY 1785

Query: 690  ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
            ++F+A   S+E A++RG +  ++ + + +G  P++                   LPWD+L
Sbjct: 1786 LTFYAYKYSIEAAKKRGTFPLYEKTGYPKGELPVE----------GFYHPEIWNLPWDKL 1835

Query: 750  KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
             + +K  G+RN+      PT +++ I   S  I+P +  +Y KS   G+F  V+     E
Sbjct: 1836 VEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAE 1895

Query: 810  LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
            LK+R L+ E ++  +  + GS+  +E IP+D++++  TA +I  +  + + +  Q W+  
Sbjct: 1896 LKRRGLYSEELLKKISDNYGSVQGLEEIPEDMRRVFVTALDIHWLDHLLAQANIQMWLTD 1955

Query: 870  AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLN 924
            + S  + + +E + + +   Y  A  +G K     R  S +    SVE    +    K +
Sbjct: 1956 SASKTINMINEATVEDVKAAYLIAHFLGCKGVTVYRDGSLSVQVYSVEGEKKRRYKPKPS 2015

Query: 925  AVPVTDPNSSTHSLGIPSSCTSDTE 949
                              +  +  E
Sbjct: 2016 EYAKKVLLEIVEKEPWIKNFINVDE 2040



 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 151/432 (34%), Gaps = 89/432 (20%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V        +R +  +  + +  V R+      
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV-------GVRDERKLDEVVKNIVKRI-NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +    +            
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKRILNKKE--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  +    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SINALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              E      + R L E++   +L  +          +    Y +   R           
Sbjct: 129 KRDENGNIIESPRELFERV--SILAVIPDLLYDERVFDKDGNYKQDLKRV-------EYY 179

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----- 324
            E+   FD  Y               +G   L   +F  +     E+ +   M+V     
Sbjct: 180 LENFEKFDGKY--------------SIGKYKLNKYHFERMVNLYRELAEKGKMKVSIDEF 225

Query: 325 -AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
            +M    +  + EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LSMLERGEFDKYEKEIEEYFKLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A  + AM+ K  GG               +        +    +         ++   
Sbjct: 286 MKAAHDVAMIQKMGGGCI----DGNAKIIFENEGEEHLTTMAEMYERYRHLGEFYDENYN 341

Query: 444 RKGAVCAYLETW 455
           R G   + +  +
Sbjct: 342 RWGIDVSSVPIY 353



 Score = 69.9 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 32/169 (18%)

Query: 421  SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDM 479
            + G + F+ + +  +  + QGG R+GA    LE WH D+E+F+  + KN G +     ++
Sbjct: 1160 NSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNVLSNFNI 1219

Query: 480  NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
            +   W  + F + + +   + L +P                              +V ++
Sbjct: 1220 SVGIW--EDFWEALKEGKKYPLINPRT---------------------------GEVVKE 1250

Query: 540  ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VGVVHSSNLCT 586
            I    L+ ++  M +    P + F D  N R+  +    G + ++N C 
Sbjct: 1251 IDPKTLFEELAYMAWAKADPGVIFFDIINRRNVLKEAKGGPIRATNPCV 1299


>gi|149408188|ref|YP_001294622.1| hypothetical protein ORF029 [Pseudomonas phage PA11]
          Length = 563

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 163/641 (25%), Positives = 252/641 (39%), Gaps = 114/641 (17%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
               G Q+  ++Y     G      +  + R+A   A    + +K A +F+++L      
Sbjct: 25  MTTGGWQLFKEKYLWEARGL-----KDTYERIAKTAAQHTDDPDKWAAKFFDVLWRGWLA 79

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            STP L N GT      SC    + D + G + A  E AML K   G       +R  G+
Sbjct: 80  ASTPVLSNMGTIKGMPVSCSGQYIEDSIDGFYSAYHETAMLTKNGFGTSGYLGDIRPRGS 139

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I      S  +  F     D    V QG  R+GA   YL   H D  E +D  KN  DD
Sbjct: 140 IISTGGKASGTLPIFKHFVQDM-RDVAQGTSRRGAWAGYLPIDHGDFYEIVDYLKNFPDD 198

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                +++ A      F+ R+                                       
Sbjct: 199 LNIGWNLSQA------FIDRLE-------------------------------------- 214

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEIT 589
                  + AV  +++ + +   TG  +    D  N  +PQ +      V +SNLCTEIT
Sbjct: 215 ----VGDVDAVQRFQRAMYVKAITGKGYFFKPDTVNAMNPQVYKDRGLEVKASNLCTEIT 270

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TI 643
           L S  + T  C L S+NL  +      D  K    +  +   LD V              
Sbjct: 271 LFSDEDHTFTCVLSSMNLEKY------DEWKNTDAVFVSTVFLDCVAQEFIRLAKGQKGF 324

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           EK+ +     RA+GLG +GF + L    IP  S EA  I  E  + +   A  A+  +A+
Sbjct: 325 EKSVRFTEASRALGLGALGFHTYLQAKMIPLESFEAHMINLEIFQHLHEEATRATKWMAK 384

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
             G     KG                                           G+RN++ 
Sbjct: 385 AWGEPEWCKG------------------------------------------YGVRNTHL 402

Query: 764 MAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
           +AIAP  + A ICG VSQ I+P   NLY +   +G+   VN   +N  K+R  W + ++ 
Sbjct: 403 LAIAPNTSSALICGGVSQGIEPVVANLYNQPTSAGEIYRVNPVFLNLAKKRVGWTDELVK 462

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
           DL   +GS+ +++ +    K +  TA+E+D   L+  A+ RQ +I QAQS+NL+     S
Sbjct: 463 DLIKSEGSVQHLDWLSPKEKAVFKTAYEVDQAALVRLAAARQPYICQAQSINLFFDANES 522

Query: 882 GKKLDFIYRQAWLM-GLKTTYYLRSRSATSVEKSTLKGVDG 921
              +  I+++A L   +K+ YY+R+++     K   +   G
Sbjct: 523 EAYIAQIHKEALLNPQIKSLYYMRTKAGVQASKGECEACSG 563


>gi|293374707|ref|ZP_06621015.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sanguinis PC909]
 gi|325840622|ref|ZP_08167103.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sp. HGF1]
 gi|292646621|gb|EFF64623.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sanguinis PC909]
 gi|325490271|gb|EGC92604.1| ribonucleoside-diphosphate reductase, alpha subunit [Turicibacter
           sp. HGF1]
          Length = 694

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 165/708 (23%), Positives = 284/708 (40%), Gaps = 52/708 (7%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++ L       +  +  +      E +   IE            ++  ++     
Sbjct: 19  FYQLEKDHLAVEAFLIEVKSKMKTFTSEKERYEWLIEHHYYENFFKWYHIEEIVMIKEKV 78

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
             Y+  F   ++ +   Y  Y L  N  +  +       VA+ L L       +A EF  
Sbjct: 79  FSYQFKFQ-SFMAVSKFYKDYALKTNDHQYYLEYYEDRIVAVALYLA-QGDVNKAFEFAI 136

Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            +    +  +TPT  N+G     ++ SCFL  + D L  I   L  +  L+K  GG+  +
Sbjct: 137 AMIEQRYQPATPTFLNAGKARRGEMVSCFLLEMDDSLNSITYNLNTSMQLSKIGGGVALN 196

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R     I      + GV+P +K+  D+   VNQ G+R GA  AYL  +H DVEEFL
Sbjct: 197 LSKLRARNESIKEIENAASGVLPVMKLLEDSFSYVNQLGQRPGAGAAYLNVFHWDVEEFL 256

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +K   D++ R   ++    +P  F+    +N    +F+P  V      +  +     E
Sbjct: 257 DTKKINADEKSRIQTLSIGLIVPSKFINLAKENQPMYVFAPHTVFLATGKHLDDLN-LDE 315

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
            Y+       IK  R++    L   +  M FE+G+P+I FK   N   P + +G +  SN
Sbjct: 316 VYDELVQNPAIKK-RQLDPRKLLTHIAKMQFESGYPYIVFKSNANAAHPLKEIGQIKMSN 374

Query: 584 LCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           LCTEI             EE  +    S NL +    N  +   L  ++   +  L  V 
Sbjct: 375 LCTEIFQLQETSTITDYGEEDQIRRDISCNLGSLNIVNVMERRALKESVYAGMDALTAVS 434

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
            +         +K+N    A+GLG M          I Y S  A E        +++++I
Sbjct: 435 SLSQIKNAPGIQKANEELNAVGLGSMNLHGYFAKNKIAYESELAKEFVRTYFMMVNYYSI 494

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDE 748
             S+++A E+  ++  F+ S +  G +    +      + +        M   ++  W  
Sbjct: 495 ERSMQIAMEKGRSFIGFEKSDYASGEYFKLYLTEDFTPKSDRVKELFHEMVIPTKNDWAH 554

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L K VK  GM ++  +AIAPT +I  I   + SI P    +  ++  +        +L  
Sbjct: 555 LAKSVKENGMYHAYRLAIAPTQSIGYIQNATASILPVVDLVERRTYGNATTYYPMPYL-- 612

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                         +D    + +A+ +D M ++E  ++ Q  ID
Sbjct: 613 -----------------------------AEDNMFFYKSAYRMDMMKVLELIAQVQPHID 643

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           Q  S  LY+D   S ++L   Y  A  +GLK+ YY R+++ +  E +T
Sbjct: 644 QGISTTLYVDSHTSTRELVRYYLYAHHLGLKSLYYTRTKNLSFEECTT 691


>gi|226355314|ref|YP_002785054.1| ribonucleoside-diphosphate reductase [Deinococcus deserti VCD115]
 gi|226317304|gb|ACO45300.1| putative ribonucleoside-diphosphate reductase [Deinococcus deserti
           VCD115]
          Length = 996

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 140/618 (22%), Positives = 232/618 (37%), Gaps = 96/618 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVA 431
           +  VPDD+ GI GA ++ A  AK S     D + +R  GA I G+ G S G + FL ++ 
Sbjct: 212 VQPVPDDMAGIIGAARKVAEDAKLSLEPRIDLSSMRPEGAPIKGSGGTSSGPVSFLLEIF 271

Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           ++     N                        QGG R+GA  A +   H DV +FL  + 
Sbjct: 272 DNFLEWANRGAEQSGPINTLRFVYAPVLRVVRQGGTRRGAGMATISIEHPDVLDFLTAKD 331

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL------YGKEFEI 520
              +         N +  +   F   +     W + +  EV   + L      +      
Sbjct: 332 LDREAAEGDISTFNISILVSSAFWDTLQAGGVWPVAA-QEVPGKYYLARQEGKFSGTLPE 390

Query: 521 AYENYERQADRGE---IKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                E  A       ++  +  I A  LW ++    + TG P + F D  N  S  +++
Sbjct: 391 LPVRAEDDARGVPVYTLRGGKTGIPAQWLWNEIAQHAWSTGEPGLIFNDRVNEFSALKNL 450

Query: 577 G---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           G    + S+N C EI L         C+LG+INL A+   + FDY    + +RT VR LD
Sbjct: 451 GARYEIRSTNPCGEIPLTVG----EPCDLGAINLAAYVKGSDFDYPTFRADVRTCVRFLD 506

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           +V+D+N   +E  + ++   R +GLG+MG   AL  + + Y +    +   E M  +   
Sbjct: 507 DVLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKMGLRYDNEAGRQAISEIMGALRDE 566

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A++ S  L QERG Y  ++         P                               
Sbjct: 567 AVAESERLGQERGVYPVYERHPGKVPHAP------------------------------- 595

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
                RN   + +APT T + + GVS  I+P +     +   S    +++   V  L   
Sbjct: 596 ----RRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLSSY 651

Query: 814 ----------DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
                         + +   +  + GS+  +  IPD L+++   A +I P+  +      
Sbjct: 652 PPASGMAQGDGWDWDKVTEAVSENHGSVVGLPFIPDALQQVFVCAHDIKPLDHVRMQGAV 711

Query: 864 QKWID------QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           Q+  D       + S  + L +  + + +   Y +A+  G K     R  S      ST 
Sbjct: 712 QQAFDAEGFAANSLSKTINLPNNATVQDVQDAYTEAYRTGCKGITVYRDGSRQFQVLSTS 771

Query: 917 KGVDGKLNAVPVTDPNSS 934
           K  + K    P       
Sbjct: 772 KKKEKKAEDQPAQAAAEV 789



 Score = 53.7 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 12/163 (7%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349
            F+     I   +Y    +G         F R+A  +A  E E  +E  A  +++L++  
Sbjct: 11  NFDENAQHIAKRQYLQPTDGDVG----GMFRRIANWVAGAEQESVREHWAQAYFDLMAEK 66

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDD----LYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+    +       G+    ++ A++ K  GG G +  
Sbjct: 67  KFCPGGRVLAGAGTQHGNVLNCFVQGATEHEPSSFEGVMEVARKLALVTKVGGGNGVNLD 126

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
                        G       ++  A+       +G  R    
Sbjct: 127 VYHPRSEGSRPDAGVRG--WAYMSAAHADVQDFIEGLMRPPTQ 167


>gi|86156144|gb|ABC86790.1| ribonucleotide reductase alpha subunit [Borrelia turicatae]
          Length = 691

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 157/714 (21%), Positives = 309/714 (43%), Gaps = 71/714 (9%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++ L  +     +     ++   P     Y+ +       +E+  +  ++ + N 
Sbjct: 17  FYRLEKD-LEALSVFLSEVNSKSLKFKNPNERMHYLIDNDLYENFYENYSEEQILEIYNL 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
           +  E      Y+     Y  Y L +N   + +E  +   + V++ LA         A++ 
Sbjct: 76  VSLENFQFKSYMSASKFYKDYALKMNDGNTYLESYEDRIIAVSLFLA---DGCFDFALKL 132

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
              +    +  +TPT  N+G +   +L SCFL  V D L  I   +     L+K  GG+ 
Sbjct: 133 ALEMIKQRYQPATPTFLNAGKKVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G    ++G+IP +K+  D     +Q G+RKGA   YL  +H D+E+
Sbjct: 193 LNLSNIRARGEEIRGIPNIAKGIIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIED 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK--EFE 519
           FLD +K   D++ R   ++    IPD F     Q   +  F+P  +      +    +F+
Sbjct: 253 FLDTKKINADEKSRVQTLSLGVIIPDKFFDIAKQGKNYYAFAPYSLYKATGRFMNEIDFD 312

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
           + Y+ +          + +++SA  +  ++  + FE+G+P+I ++  CN+ +P + +G +
Sbjct: 313 LEYDLF----ASDPRILKKELSARDILIRIARLQFESGYPYIVYQTACNLNNPLKGLGKI 368

Query: 580 HSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
             SNLCTEI    +                  C LGS+N++    +          T+  
Sbjct: 369 KMSNLCTEIFQIQTPSVIGDYGEEDLIGYDISCILGSLNIVNVINS------DFEHTVDI 422

Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
           A+R L +V+D  +       +K+N+ + A+GLG+M     L    I Y S EA++     
Sbjct: 423 AMRALTSVVDKADIKNAPSIRKANNDYHAVGLGVMNLHGFLIKNKISYESAEALDFVRTF 482

Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MN 739
              ++F+++ +S+ +A++R  A+  F  S +  G +    +      + ++       + 
Sbjct: 483 FMLLNFYSLKSSMNIARDRGCAFKDFNKSEYYNGNYFDMYLSEDFTPKTDVIKQIFSGLK 542

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              +  W+ LK+ V+  G+ +S  +A+APT +I+ +   + S+ P  + +  +   +   
Sbjct: 543 LPLKSDWESLKRDVQIHGLYHSYRLAVAPTQSISYVQNATTSLMPIVEPVEARVYGNSTT 602

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                +L                                 +   +  +A+ +D   LI+ 
Sbjct: 603 YYPMPYLNR-------------------------------ENALLFKSAYYMDMKKLIDL 631

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            S  Q+ +DQ  S  LY+ +E S ++L  +Y  A   GLK+ YY R+++ +  E
Sbjct: 632 ISEAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 685


>gi|218442223|ref|YP_002380552.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp.
           PCC 7424]
 gi|218174951|gb|ACK73684.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp.
           PCC 7424]
          Length = 1123

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 132/451 (29%), Positives = 227/451 (50%), Gaps = 24/451 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K++++  DG+  + N  ++  +VE AC G +DV+   + +     + +G++  +++  LI
Sbjct: 36  KIQVVKRDGSKAALNIAKIREVVEWACVG-KDVNPIALEAGLTTRLRNGITTREIQDNLI 94

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             +  +   +EP++  V  R  +  L ++ L         A        Y +     I+ 
Sbjct: 95  NCALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------ANRGYQYGNYDQTVKTKIDH 145

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
               R +       +L      +  + D  ++Y G  +L  RY L       E+PQ   +
Sbjct: 146 NQYDRRIL-VYSSEELQEAGTWINSDWDTDYDYAGAVLLTSRYLL-----PDELPQEALL 199

Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
             A+ LA  E    + K A +FY  ++      +TP L N    +  L+SCF++ + D+L
Sbjct: 200 TCALLLASVETPENRLKWARKFYEAIAKRQISLATPILANLRVPNGSLTSCFISAIDDNL 259

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF  +   A ++K  GG+G + + +R  G+ +      S GVIP++K+ NDTA+AVNQ
Sbjct: 260 ESIFSEVTNTAKISKNGGGVGINVSRIRATGSWVMNKPNASGGVIPWIKILNDTAIAVNQ 319

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG+R GAV   L+ WH+DV EFL+++   GD RR+ +D+     + D FM+RV     WT
Sbjct: 320 GGRRAGAVTISLDIWHLDVPEFLEMQTENGDQRRKAYDIFPQLVMADEFMRRVIHKQEWT 379

Query: 501 LFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           L  P E+      +L +L+G+EFE  Y   E     GEI ++++++A  L++ ++    E
Sbjct: 380 LVDPYEIRTKFGVELAELWGEEFEQVYSKIETAIHNGEITLYKRVNARELFKHIMRSQLE 439

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           TG P++ FKD  N  +P +H G +   NLC 
Sbjct: 440 TGMPYLAFKDTINRANPNKHEGYIPGVNLCV 470



 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 143/357 (40%), Gaps = 63/357 (17%)

Query: 565  DPCNIRSPQQHVGVVHS--SNLCTEITLNSSSE-ETAVCNLGSINLLAHFANNQFDYDKL 621
            D      P +H+G+ +   +  CTE   N     E+  CNL S+NL         D   L
Sbjct: 796  DTYCFNEPLRHLGMFNGILTGQCTESFSNVKPGLESHCCNLVSLNLANL------DNSDL 849

Query: 622  ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              T + AVR+LDN ID+     E AK  N+ +R IG+G MG    L    + Y   E + 
Sbjct: 850  EDTCKIAVRLLDNTIDLTHPPFEAAKNHNNLYRTIGVGCMGLADWLAKRRLSY---EHLT 906

Query: 682  IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
                  E I +    +S+EL+QERGAY+ F GS W QG        + ++  +    N  
Sbjct: 907  DISHLFEEIGYWCTLSSMELSQERGAYACFPGSDWSQGKL------IGSKPVEWFIENAH 960

Query: 742  SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
                W +L + ++  G+RNS+  AIAP  + + + G + S+ P Y   +      G   +
Sbjct: 961  HPERWAKLAEDIQLYGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWAKGAVPI 1020

Query: 802  VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
               F      +   W                     P++      T    D   ++++ +
Sbjct: 1021 APPF-----IKESFW-------------------FYPEN-----KT---YDQNKVVKAIA 1048

Query: 862  RRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLMGLKTTYYLRS 905
              Q+WID   S+    NL       E        K +      AW  G K  YY+R+
Sbjct: 1049 VMQQWIDTGISMELLFNLNQGVYFPEDPERFLKAKDIYDTLILAWREGCKAVYYIRT 1105


>gi|254455135|ref|ZP_05068570.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198263545|gb|EDY87817.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 535

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 134/607 (22%), Positives = 238/607 (39%), Gaps = 86/607 (14%)

Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLT- 374
             + RVA GLA  +    ++K   +F+  +  F  +     L   GT RH  L + F+  
Sbjct: 3   ETWARVANGLAAHKALAVRDKVVTDFHAAMHDFKVLPGGRILSGCGTARHVTLCNTFVMR 62

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+PD + GI   L++ A+  +  GG+G D++ +R  G  + G + ++ G +  + + + T
Sbjct: 63  TIPDSVDGIMDTLKDAALTMQMGGGVGFDFSMLRPSGTVVRGLDCRAAGPLAAMDIFDAT 122

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              +  G   +GA+ A +   H ++E F++ +     DR R  + N +    + FM  + 
Sbjct: 123 CKMIVSG-MGRGAMMATMRCDHPNIEAFINAK----SDRTRLRNFNMSVMATNEFMAAIA 177

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            +  W L                               +  V R++ A  LW  ++   +
Sbjct: 178 ADETWDLVW-----------------------------QGAVMRRLRARDLWNAIMKQTY 208

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614
               P + F D  N  +P +++ V+ ++N C E  L  +      C L SINL    +  
Sbjct: 209 AAAEPGVLFIDRINAVNPLRYLEVIAATNSCAEQPLPPN----GTCPLASINLAQLVSAP 264

Query: 615 QF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  D  +L   +R AVR+ DN +D++   ++  ++     R IG+G+ G  +A+ +
Sbjct: 265 FTTDARLDVTQLRQLVRVAVRMFDNSLDVSRFALDAQRQQAQDQRRIGVGVTGVANAIAM 324

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + + Y S +AV +    M+ I   A  AS  LA ERGA+  +                  
Sbjct: 325 MGVRYGSSKAVFLLGSWMQTIQNAAYGASALLANERGAFPLYDA---------------- 368

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788
               D+   +R  +    +++  V+  G+RN     IAPT T +     VS  I+P +  
Sbjct: 369 ----DKHLASRGIQALNQDIRALVEQHGLRNGTLTTIAPTGTTSMFAENVSSGIEPIFST 424

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
            + ++                 K         + D          I      L     T 
Sbjct: 425 SFTRTIT---------------KANGEKSSERVMDYAAWQ--FAQIYGPNAALPDSFVTV 467

Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            ++ P   I   +  Q+WID   S  +    +   +    IYR A+  G K     R  +
Sbjct: 468 ADLSPDDHIAMQAAAQEWIDSGISRTVNCPEDIPFEAFKGIYRAAYDAGCKGCTTYRPNA 527

Query: 908 ATSVEKS 914
            T    S
Sbjct: 528 TTGSVLS 534


>gi|312973114|ref|ZP_07787287.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
 gi|310333056|gb|EFQ00270.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia
           coli 1827-70]
          Length = 718

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 166/678 (24%), Positives = 274/678 (40%), Gaps = 61/678 (8%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 29  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 87  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P    
Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                 F+ N                               +   ++  A+EI    +I+
Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648

Query: 859 SASRRQKWIDQAQSLNLY 876
           + +   + +DQ  SL L+
Sbjct: 649 TYAEATRHVDQGLSLTLF 666


>gi|298244257|ref|ZP_06968063.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Ktedonobacter racemifer DSM 44963]
 gi|297551738|gb|EFH85603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Ktedonobacter racemifer DSM 44963]
          Length = 1225

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/503 (21%), Positives = 198/503 (39%), Gaps = 82/503 (16%)

Query: 441  GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
               R+GA+   L+  H D+EEF+ ++K  G         N +  + D FM+ V  +A W 
Sbjct: 614  SNSRRGALMLMLDDNHPDIEEFITVKKKAG----MIEHANLSVCVSDAFMQAVKDDADWN 669

Query: 501  LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
            L                               + +V + + A  LW  + T  +E+  P 
Sbjct: 670  LVW-----------------------------QGEVKKTLKARHLWDLICTSAWESAEPG 700

Query: 561  ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            + F D  N  S   +   +   N C E  L   +    VCNLG++N+ A  ++   D+ +
Sbjct: 701  VVFMDRYNKESNTWYYETIRCVNPCGEQGLGPWN----VCNLGALNVAAFVSDGAMDWQR 756

Query: 621  LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
            LA   + ++R LDNVID   +  ++ +++    R  GLG MG   AL  + I Y S  ++
Sbjct: 757  LAEISKVSMRFLDNVIDATDYFFDENREAQLGTRRTGLGTMGLADALIKMKIAYGSEASI 816

Query: 681  EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
             + +     I   A  AS E+A E+G +  F+   + QG      I  L +         
Sbjct: 817  PVIERIYSTIRDSAYEASTEIAAEKGPFPRFERDKYLQGK----FIKRLPK--------- 863

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
                    L++++K  G RN+  +  APT T + + GVS  I+P +    ++ + +G+  
Sbjct: 864  -------SLQEKIKKHGTRNAVLLTQAPTGTTSLLSGVSSGIEPVFDFAMIRRDRTGEHI 916

Query: 801  VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
            + +  L         W +A  +                        ++ ++ P   I   
Sbjct: 917  LYHPLLQA-------WRDAHPN----------------ASTPHYFVSSKDLSPEEHIRVQ 953

Query: 861  SRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            +  Q++ D + S  +      +  +++ +YR A+ MG K   Y R  S      + ++  
Sbjct: 954  ATVQRYTDASISKTVNAPNNHTVDQVETLYRLAYEMGCKGVTYYRDGSR-DAVLTRIEDE 1012

Query: 920  DGKLNAVPVTDPNSSTHSLGIPS 942
              +  A    +         + S
Sbjct: 1013 KKQKQATGDANETQGLMMEPVTS 1035



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 299 QILYDRYFLHI-NGSRIE-MPQAFFMRVAMGL---ALKETEKEKRAVEFYNLLSSFHFMC 353
           ++  DRY L    G  +E  P+  + RVA G+      E ++      FY+ LS+F F+ 
Sbjct: 35  KVFMDRYSLKDATGQPLEFYPEDMWKRVARGIAAVEQGEEKQAFWEERFYDALSNFQFVP 94

Query: 354 STPTLFNSGTRHP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
               L  +GT H     +CF+   P D   GI   L+    +    GG+G + + +R  G
Sbjct: 95  GGRILAGAGTGHQVTFYNCFVVPSPEDSRQGILENLKVMTEIMARGGGVGINLSTLRPRG 154

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           ++I   NG + G   + ++ +     V Q G   G  
Sbjct: 155 SYIKTVNGTASGPCSWAQLYSVATGDVIQQGGCFGPN 191


>gi|320450942|ref|YP_004203038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermus scotoductus SA-01]
 gi|320151111|gb|ADW22489.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermus scotoductus SA-01]
          Length = 586

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 148/656 (22%), Positives = 258/656 (39%), Gaps = 97/656 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-MPQAFFMRVAMG 327
           +       + + L   L + +           L+        G  +E  P+  + R+  G
Sbjct: 1   MPRWYAQEEALRL--ALDFFQGDELRASVF--LHRYALKDPEGRLLEATPEEMWQRLVQG 56

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVP-DDLYGIFG 385
           +   E        EF  L S F F+     LF  G  R   L +C+   +  D + GI  
Sbjct: 57  VTRVEKG---ATQEFSWLFSDFRFVPGGRILFGLGNWRRSTLFNCYYIPIREDSVKGITR 113

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445
            L E A    Y GG+G++   +R  GA +     +S G + F+++ +  A  +   G R+
Sbjct: 114 FLDEAARTFAYGGGVGSNADALRPKGAKVGNAGMESSGAVSFMELFSTLAGVMGASGGRR 173

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA+       H D+ +FL ++ +   +R R    N +    D F++    +  WTL    
Sbjct: 174 GALMLTFSDTHPDLLDFLQVKTDP--ERSRVRHANISLRATDAFLQAALADEPWTLSF-- 229

Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
                H                        + R I A   W  ++   +++  P + F D
Sbjct: 230 TTPREH------------------------ITRTIRAKEAWDLLVEAAWQSAEPGLLFWD 265

Query: 566 PCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YD 619
                +  Q+ G+ V   N+C E+ +         CNLGS+NL+A       D     Y 
Sbjct: 266 RVRTWATAQYGGMEVEGVNVCGEVPMEPY----GACNLGSLNLVAFVQEPFTDRARLDYA 321

Query: 620 KLASTIRTAVRVLDNVIDI--NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            L    R AVR LD V+D+  N H +   ++++   R +GLG+MG    L +L +PY + 
Sbjct: 322 GLEEATRLAVRFLDAVVDLGKNRHPLRAQREASLRSRRVGLGIMGLADTLAMLGLPYGAE 381

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
           E++  A+E M  I   A   S  LA++RG++ +F                   + ++ + 
Sbjct: 382 ESLTFAEEVMRRIKEAAYWESTRLARQRGSFPAF-------------------DPKEHIK 422

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                 L  + L + V+  G+RN+  ++IAPT +I+ + GV+  I+P +   Y++     
Sbjct: 423 SPFIQSL-PEALIQAVEK-GLRNAALLSIAPTGSISILAGVTSGIEPIFALTYLRHAGGQ 480

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            F   +  L    ++R                       +PD       TA  + P   +
Sbjct: 481 VFLAEHPLLKRYRRERG--------------------GEVPDWP-----TAHTVAPFQRV 515

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              +  Q+ +DQ+ S  + L  E   + ++ ++  AW  G K     R  S   V 
Sbjct: 516 RLQATLQRHVDQSISSTVNLPRETPKEVVENLFLTAWKEGCKGITVFREGSREEVI 571


>gi|66394955|ref|YP_240947.1| ORF006 [Staphylococcus phage G1]
 gi|62636977|gb|AAX92088.1| ORF006 [Staphylococcus phage G1]
          Length = 704

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 181/723 (25%), Positives = 295/723 (40%), Gaps = 77/723 (10%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            KL +  E L    K  +  T      +  E      +EG   ++   ++ D  +  +  
Sbjct: 23  NKLYKDQEALDEYLKYIEDNTRKFNSEV--ERIRVLTKEGTYDKIFD-NVPDTIIDEMTK 79

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHI---NGSRI--EMPQAFFMRVAMGLALKETEKEKR 338
                      ++  Q  Y+ Y       N   I  E  +   +RVA+ L   +  K   
Sbjct: 80  LAYSFNFKFPSFMAGQKFYESYASKQYDENKKPIFVEDYEQHNVRVALYLFQNDYVK--- 136

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A E    L    F  STPT  NSG  +  +LSSC+L  V D +  +       A  +   
Sbjct: 137 ARELLVQLMEQTFQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNG 196

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  D T +R  GA +      S+GVI F K         +QGG R+G+   YL  +H 
Sbjct: 197 GGVAIDLTRIRPKGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHN 256

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ + L  +K    +  R   ++    IP+ FM+ V +   +  F   +  D++ +YGK 
Sbjct: 257 DILDLLSSKKINASESVRLDKLSIGVTIPNKFMELVKEGKPFYTF---DTYDINKVYGKY 313

Query: 518 FEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            +     E Y++  D   I   +   A  +   +     E+G+P++ + D  N   P ++
Sbjct: 314 LDELNIDEWYDKLLDNDSIGKVK-HDAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKN 372

Query: 576 VGVVHSSNLCTEITLNSSSEE--------------TAVCNLGSINLLAHFANNQFDYDKL 621
           +G V  SNLCTEI+      E                VC LGS+NL+            L
Sbjct: 373 LGKVKMSNLCTEISQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLVNVVEKGL-----L 427

Query: 622 ASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             ++    R L  V D ++   +   +K+N   RAIGLG M     L    I Y S EA+
Sbjct: 428 NESVDIGTRALTKVTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREAL 487

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--- 736
           ++ +     I+F +I  S+ +A+E    +  F+ S +  G + +  I    + + +    
Sbjct: 488 DLVNSLYSAINFQSIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKK 547

Query: 737 ---AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +   ++  WDEL K VK  G+ N    A APT +I+ +   + SI P    +  + 
Sbjct: 548 VLNKVYIPTQDDWDELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSAIENRQ 607

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
               +      +L    +              +++G                 TA++ID 
Sbjct: 608 YGDMETYYPMPYLSPITQ-------------FFYEG----------------ETAYKIDN 638

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I +++  QK  DQA S  LY++ E    KL  +Y  AW  GLK+ YY RSR  + +E
Sbjct: 639 KRIINTSAVVQKHTDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIE 698

Query: 913 KST 915
             T
Sbjct: 699 CET 701


>gi|301331891|gb|ADK70921.1| U28 [Elephant endotheliotropic herpesvirus 2]
          Length = 799

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 146/705 (20%), Positives = 272/705 (38%), Gaps = 83/705 (11%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAV--------EF 342
           ++      + YF   +G RIE    FF R+    +M +                    + 
Sbjct: 126 FMSAMKFINIYFREYDG-RIENLLHFFCRITAFFSMSIVRNPAYYGFFKKPDFLSIFGDI 184

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG--ALQENAMLAKYSGGL 400
           +  L +      +P + N+G     L+SCF+     +               +    GG+
Sbjct: 185 FQQLVTQTVGLCSPVMLNAGISTSNLTSCFIIVRDLECNADVNDVHTSILRQILDCGGGI 244

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G D +             G    +  + K+ N T    N+  +R   +   ++ W+ ++ 
Sbjct: 245 GLDVSHF-----------GSGLDISKYFKMLNSTVDFYNEYLRRPVGLSVSMDIWNKNIH 293

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEF 518
           + L ++     +      +  A  IPDLF KR  ++    W+LFS +    L   YGK+F
Sbjct: 294 KLLRMKMPNASEEESCPSLFNAVMIPDLFFKRYEEDPGGKWSLFSGNMAKVLSSTYGKKF 353

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-- 576
           E AY  YE+           +I    +   +L  +  TG P+I FKD  N     +    
Sbjct: 354 EAAYVKYEQLGLYDT-----QIPIKEILFLLLNAIVNTGTPYILFKDAMNRHYYMEDNTS 408

Query: 577 --GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-------------------- 614
              ++ ++NLC EI  +++  E  VCN+ S+NL                           
Sbjct: 409 SSYIIRATNLCAEIVHHANDSEVGVCNICSVNLTNFVKCYVPVDNQSLQEGIDFVVNEDH 468

Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              F    L  T++  V +++  I  +      A+ S   +R++G+G+ G  S    + +
Sbjct: 469 TKMFSLKDLRETVQKVVIMVNCSIAESGSIPMGARLSAGRYRSMGVGVQGLHSTFLKMKL 528

Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE 731
            + S  A ++     E + + A++ S+ L +     + +F  S + +G    D    +  
Sbjct: 529 GFTSAAARDLNRRIFESMYYSAVNTSMTLCKNGLEPFYNFHRSKYSRGWLHYDGWEDVKL 588

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                         W +L+  +   G+ N+  +A+ PT+  +   GVS++  P++ N + 
Sbjct: 589 TLP--------SDWWSKLRAGIGKYGLYNAQFIALMPTSGTSQTSGVSEAFYPNFSNFHS 640

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK-KIHATAFE 850
           K     +  V N  L  E      +   +  ++             P+  K   +  AFE
Sbjct: 641 KVTTGVEVLVANKDLQKEFSMYSSYLSNIDWEVSKA---CETYFTEPEWEKLMRYKNAFE 697

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG-KKLDFIYRQAWLMGLKT-TYYLRSR 906
            +   LI+  + R  ++D +QS++L++  ++ +G + +  + R A   GLKT  YYLR  
Sbjct: 698 YEQEALIDMCADRAPFVDHSQSMSLFVREEDITGCRYIYSLLRHAHKKGLKTGMYYLR-- 755

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTEC 950
               + K        K +   V   +S + S+    SCT  D  C
Sbjct: 756 ----IRKQARLRDLEKKDVFGVPVCSSGSRSVAKKDSCTEADNTC 796


>gi|85057305|ref|YP_456221.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789410|gb|ABC65142.1| ribonucleoside-diphosphate reductase alpha chain [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 845

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 153/700 (21%), Positives = 276/700 (39%), Gaps = 65/700 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L +  ++           L  +      E         +      +  +   + Y++
Sbjct: 176 KEALQSFLQEGVAPKLKRFATLQDK-LTFLQENEYYESTFLQKYNYSQIKEIYQ-IAYQK 233

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +  F  ++G    Y  Y L        +E  +    R+++            A      L
Sbjct: 234 NLTFPTFMGAFKFYHDYALKTRDKQHYLETYED---RLSINALYHAKGDFAIAKRLIVSL 290

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  + T
Sbjct: 291 INQDFTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINIT 350

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I G  G  +GV+   K+ + +    +Q G+R GA   YL  +H D+ +FL  
Sbjct: 351 NLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQMGQRTGAGAVYLNVFHADIIDFLST 410

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYE 523
           +K + D+  R   ++    +P+  ++   +N     F P  V      YGK F       
Sbjct: 411 KKLSADEDVRVKTLSLGVVVPNKMIELARKNEVMYTFFPHTV---FLEYGKNFADIAVDM 467

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +Y         KV +K I+   L   +  M  E+G+P++ F D  N          V  S
Sbjct: 468 SYWYDILIVNPKVQKKAINPRQLLELIAQMQGESGYPYLMFCD--NTNQANTSDLKVKFS 525

Query: 583 NLCTEITLNSSSEETAVCNLG---------SINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           NLCTEI   + +      +           S NL +    N    + +  T+  A+ V++
Sbjct: 526 NLCTEILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNTIQETVFMAMEVMN 585

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +  N   +    K+N  +R++G G+MG    L   +I + S E  ++ D     I+F
Sbjct: 586 CVSENTNISYVPAVAKANFLNRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAINF 645

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPWD 747
           +++  S   A+     +  FK S +  G +  +   +L +     +    +   ++  W+
Sbjct: 646 YSLLHSCNKAKTTGKKFYRFKKSKYADGSYFNNRGEILPKTNKIKKMFQNITLPTQSDWN 705

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK+ V   G+ NS+ +AIAP  +I  I G + S+ P  Q +  ++  +         L 
Sbjct: 706 QLKQDVMKFGLYNSHRLAIAPNGSIGYIMGATPSLTPVKQLVEERTYGNSKTYCPMPALK 765

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                               ++ TA++I+   LI+  +  QK +
Sbjct: 766 QA--------------------------------SFMYTTAYKINKYDLIDVIAIAQKHV 793

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           DQ  S  L +  + + ++L   Y  A    +KT YY R++
Sbjct: 794 DQGISFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQ 833


>gi|254496937|ref|ZP_05109776.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           drancourtii LLAP12]
 gi|254353846|gb|EET12542.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           drancourtii LLAP12]
          Length = 188

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 154/198 (77%), Gaps = 11/198 (5%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+SG+FTV+N +LV +LK  +LWD
Sbjct: 1   MRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINPYLVADLKALNLWD 60

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           E M++DLKY +GS+  I RIP +LK+ +AT+FEIDP+WL+++ASRRQKWIDQAQSLN+Y+
Sbjct: 61  EVMVNDLKYFNGSVQPISRIPAELKQRYATSFEIDPIWLVDAASRRQKWIDQAQSLNIYM 120

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            +PSGKKLD +Y  AW  GLKTTYYLRS  AT+ EKST+   DG LNAV +         
Sbjct: 121 AQPSGKKLDQLYMHAWTRGLKTTYYLRSLGATNAEKSTI--TDGALNAVKIISDE----- 173

Query: 938 LGIPSSCTS-DTECEVCQ 954
              P  C+  D +CE CQ
Sbjct: 174 ---PKVCSILDPDCEACQ 188


>gi|48696468|ref|YP_024510.1| putative ribonucleotide reductase large subunit [Staphylococcus
           phage K]
 gi|37729162|gb|AAO47529.1| ORF80 [Staphylococcus phage K]
 gi|119658117|gb|ABL87152.1| putative ribonucleotide reductase large subunit [Staphylococcus
           phage 812]
 gi|182627941|gb|ACB89103.1| gp ORF110 [Staphylococcus phage A5W]
          Length = 704

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 180/723 (24%), Positives = 295/723 (40%), Gaps = 77/723 (10%)

Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            KL +  E L    K  +  T      +  E      +EG   ++   ++ D  +  +  
Sbjct: 23  NKLYKDQEALDEYLKYIEDNTRKFNSEV--ERIRVLTKEGTYDKIFD-NVPDTIIDEMTK 79

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHI---NGSRI--EMPQAFFMRVAMGLALKETEKEKR 338
                      ++  Q  Y+ Y       N   I  E  +   +RVA+ L   +  K   
Sbjct: 80  LAYSFNFKFPSFMAGQKFYESYASKQYDENKKPIFVEDYEQHNVRVALYLFQNDYVK--- 136

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A E    L    F  STPT  NSG  +  +LSSC+L  V D +  +       A  +   
Sbjct: 137 ARELLVQLMEQTFQPSTPTYNNSGQANRGELSSCYLFVVDDSIESLNFVEDSVANASSNG 196

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+  D T +R  GA +      S+GVI F K         +QGG R+G+   YL  +H 
Sbjct: 197 GGVAIDLTRIRPKGAPVRNRPNSSKGVIAFAKAIEHKVSIYDQGGVRQGSGAVYLNIFHN 256

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+ + L  +K    +  R   ++    IP+ FM+ V +   +  F   +  D++ +YGK 
Sbjct: 257 DILDLLSSKKINASESVRLDKLSIGVTIPNKFMELVKEGKPFYTF---DTYDINKMYGKY 313

Query: 518 FEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
            +     E Y++  +   I   +   A  +   +     E+G+P++ + D  N   P ++
Sbjct: 314 LDELNIDEWYDKLLNNDSIGKVK-HDAREVMTDIAKTQLESGYPYVFYIDNANDNHPLKN 372

Query: 576 VGVVHSSNLCTEITLNSSSEE--------------TAVCNLGSINLLAHFANNQFDYDKL 621
           +G V  SNLCTEI+      E                VC LGS+NL+            L
Sbjct: 373 LGKVKMSNLCTEISQLQEVSEIYPYSYSNQNVINRDVVCTLGSLNLVNVVEKGL-----L 427

Query: 622 ASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             ++    R L  V D ++   +   +K+N   RAIGLG M     L    I Y S EA+
Sbjct: 428 NESVDIGTRALTKVTDIMDLPYLPSVQKANDDIRAIGLGSMNLHGLLAKNMISYGSREAL 487

Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--- 736
           ++ +     I+F +I  S+ +A+E    +  F+ S +  G + +  I    + + +    
Sbjct: 488 DLVNSLYSAINFQSIKTSMLMAKETGKPFKGFEKSDYATGEYFVRYIRESNQPKTDKAKK 547

Query: 737 ---AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
               +   ++  WDEL K VK  G+ N    A APT +I+ +   + SI P    +  + 
Sbjct: 548 VLDKVYIPTQDDWDELAKAVKVHGLYNGYRKAEAPTQSISYVQNATSSIMPVPSAIENRQ 607

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
               +      +L    +              +++G                 TA++ID 
Sbjct: 608 YGDMETYYPMPYLSPITQ-------------FFYEG----------------ETAYKIDN 638

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             +I +++  QK  DQA S  LY++ E    KL  +Y  AW  GLK+ YY RSR  + +E
Sbjct: 639 KRIINTSAVVQKHTDQAVSTILYVESEIPTNKLVSLYYYAWEQGLKSLYYTRSRKLSVIE 698

Query: 913 KST 915
             T
Sbjct: 699 CET 701


>gi|223937584|ref|ZP_03629487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [bacterium Ellin514]
 gi|223893747|gb|EEF60205.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [bacterium Ellin514]
          Length = 1035

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 141/691 (20%), Positives = 245/691 (35%), Gaps = 106/691 (15%)

Query: 301 LYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           + D YF   +G     E+    ++ V               V  Y+              
Sbjct: 127 VKDGYFSKTDGEVFFDEL---TWLCV--NQYGAFNSPVWFNVGLYHQYGVGKNSGRGNWF 181

Query: 359 FN----------SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +N          +   +PQ S+CF+ +V D++  I       AML KY  G G D +P+R
Sbjct: 182 YNRKTGEAERAVTQYEYPQGSACFIQSVEDNMEDIMHLAYSEAMLFKYGSGTGTDLSPIR 241

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRK 467
                + G  G+  G + FLKV +  A  V  GGK R+ A    L  WH D+EEF+D ++
Sbjct: 242 SSREKLSG-GGRPSGPLSFLKVYDQVANVVKSGGKTRRAAKMNTLRDWHGDIEEFIDAKQ 300

Query: 468 NTGDDRR-------------------RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
                                        + N +  + D FM        W   S     
Sbjct: 301 KEEKKAWALIEQGFDGSYNGEAYGSVMYQNENLSVRVSDAFMTAAEAGTEWWTKSVTGN- 359

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                     +   K  A  L  K+    +  G P + + D   
Sbjct: 360 --------------------------RPLEKKDANKLMHKIAEGTWICGDPGLQYDDAIQ 393

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRT 627
                +    +HS+N C+E    ++      CNL S+NL+     +  FD ++  + +R 
Sbjct: 394 KWHTCKGTEPIHSTNPCSEYVFLNN----TACNLASLNLMKFKREDGVFDVERFKAAVRI 449

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            +   + ++D   +  ++  +++H +R +GLG     S +    + Y S     +A    
Sbjct: 450 YITAQEIIVDNASYPTKQIAENSHIYRTLGLGYANLGSLIMSYGLAYDSDGGRALAGAIT 509

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI----------------DSIGLLAE 731
             ++ HA   S E+A   GA+  +  +       PI                D++  +  
Sbjct: 510 AIMTGHAYEQSAEVATSMGAFKGYHDARCAHVSKPIARDNVESMLGVIKLHRDAVEQIQP 569

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL- 789
            R+   +   +R  WD   +R +  G RN+    +APT TIA +    +  ++P    + 
Sbjct: 570 SREFHYLKEEARKTWDRALERGQKAGYRNAQVTVLAPTGTIAFLMDCDTTGVEPDIALVK 629

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG-----SIGNI-----ERIPD 839
           Y      G   +VN  +   L++     EA+   + + +       + +        +  
Sbjct: 630 YKLLAGGGLLKLVNRTVPEGLRRLGYGTEAIQKIVAHVEKYDTIEDVQDNGQAVSSGLRP 689

Query: 840 DLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           +  ++   AF        I  M  ++     Q +I  A S  + L  E + + +   Y Q
Sbjct: 690 EHLEVFDCAFKPYQGKRSIKYMAHLKMMGAAQPFISGAISKTVNLPQECTVEDIRDAYVQ 749

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           AW MGLK     R  S  S   +T K     
Sbjct: 750 AWKMGLKCVAIYRDGSKRSQPLNTKKNSTEP 780


>gi|9626017|ref|NP_040263.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2]
 gi|266914|sp|Q01037|RIR1_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|66407|pir||WMBEP6 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain -
           saimiriine herpesvirus 1 (strain 11)
 gi|60382|emb|CAA45684.1| ribonucleotide reductase, large subunit [Saimiriine herpesvirus 2]
 gi|330990|gb|AAA46137.1| ribonucleotide reductase large subunit [Saimiriine herpesvirus 2]
          Length = 767

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 174/811 (21%), Positives = 299/811 (36%), Gaps = 101/811 (12%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +I +   +++    + +            E+   ++ K    +  E    Y   F  
Sbjct: 3   QETIISNLIDMLKVSAGWDREA---------NEISGRLFHKLMDMSSTETISQYMSLFGP 53

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGL---QILYDRYFLHIN---G 311
            +E  +   L      + ++  +  + +   DF      G+   +  YD Y L       
Sbjct: 54  LLEPHI---LEFIQNYEQEIDEVCLEYRASYDFMCLRNCGILPAKRFYDTYVLPPRTEMN 110

Query: 312 SRIEMPQAFFMRVAMGLALK----------------------ETEKEKRAVEFYNLLSSF 349
            + E    FF R+A   A                             +    FY ++SS 
Sbjct: 111 GKYESIPHFFARIAAYCAWNCIMCEPLKDTLVYVQKRDWNVEIKTDMQIFKYFYKVISSQ 170

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGA-LQENAMLAKYSGGLGNDWTPV 407
              C+TP + ++G     LSSCF+     D       +   E A L     G+G D T  
Sbjct: 171 LVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKSTISSIFGELAPLLASRSGVGVDVTKF 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
              G +IH            LK+ N      N    R  +V  Y+E WH  + EFL  + 
Sbjct: 231 SFGGKNIHSC----------LKLINAQVEFFNDKSVRPVSVATYIEVWHCQIHEFLSAKL 280

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENY 525
               D  R + +     +P LF K    +    W LF P +  +L  LYG EFE  Y   
Sbjct: 281 PENPD--RCNSIFQGVCVPSLFFKMYESDPNGLWYLFDPQDAPNLTRLYGLEFEEEYLRL 338

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNL 584
                  E K  + ++  +L   ++  + +TG P++  K+  N     +  G  ++ SNL
Sbjct: 339 V-----SEKKYKQSVTLKSLMFSLINTIIKTGSPYVISKEAMNKHHWYETQGEAINCSNL 393

Query: 585 CTEITLNSSSEETAVCNLGSINLLAH----------FANNQFDYDKLASTIRTAVRVLDN 634
           C EI      + T+ CNL ++ L                 QFD+ KL   ++ AV  + N
Sbjct: 394 CAEIVQQP-KQFTSTCNLANVCLPKCLNSSNFPYTCSNTAQFDFSKLEYAVQAAV-FIIN 451

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
              ++      +       R++G+G  G       +   Y   E+  +  +  E + + A
Sbjct: 452 ACILSPSPT-SSATVGQRERSMGIGCHGLADVFSEMGYGYLDLESECLDRDIFETMYYTA 510

Query: 695 ISASVELA--QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +  S E+    +   ++ F+ S    GVF   +   + +        R     W  L+  
Sbjct: 511 VKTSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMPQ--------RVPMKQWIHLQDN 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+ NS  +A+ PTA  + + G + S  P + N+  K +   +    N   +  +K 
Sbjct: 563 IKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEEIMKPNITFLKNVKP 622

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +DL        ++++ G +  +        K   TAF+  P   +  AS R  ++DQ+QS
Sbjct: 623 QDLCT------VRFYGGDVSMMPEDVSTRYKHFLTAFDYCPEAQMRRASIRAPYVDQSQS 676

Query: 873 LNLYLDEPSG---KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL----KGVDGKLN 924
           L L+L E +    K L  +    + +GLKT  YY R +  T + +       +       
Sbjct: 677 LTLFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVKKTTKLLQLECLKLDEHTKKDAQ 736

Query: 925 AVPVTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
            V          S     +C  D  EC  CQ
Sbjct: 737 IVLADLARELPDSHKTEDACPLDQSECIACQ 767


>gi|325989610|ref|YP_004249309.1| putative ribonucleoside-diphosphate reductase [Mycoplasma suis
           KI3806]
 gi|323574695|emb|CBZ40351.1| probable ribonucleoside-diphosphate reductase [Mycoplasma suis]
          Length = 528

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 135/549 (24%), Positives = 254/549 (46%), Gaps = 49/549 (8%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D +  I   +  +  L+K  GG+  + + +RG GA I   +  + GV+P LK+  +
Sbjct: 1   METEDSINSINYIIATSMQLSKIGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKILEN 60

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                +Q G R+G+  AYL  +H D+ +F+D +K   D++ R   ++    IPD F++  
Sbjct: 61  VFDYADQLGMRRGSGVAYLNIFHFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFLQLA 120

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
           T+N  + +F P+ +   + +   +     E Y++ A   +I + +++SA  +  ++  + 
Sbjct: 121 TENKNFFIFEPNTIYQKYKVLLSDLN-MNEWYDKLAADKDI-LKKELSARNVLTRIAQIQ 178

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606
           FE+G+P++ + D  N + P + +G +  SNLCTEI             +E  +    S N
Sbjct: 179 FESGYPYVIYIDNANKQHPLRGLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDVSCN 238

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L +    N  +   L   I  ++R L  V D+         +K+N + R++GLG++ F  
Sbjct: 239 LASLNLVNLLEEKDLEKVIDISMRALTAVSDLTSIKNAPSIRKANESFRSVGLGVLNFTG 298

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPID 724
            L   ++ Y  PE +E AD     I+++++ AS  +A+E    + +F+ S +  G +   
Sbjct: 299 VLLKNNLAYDDPEVLEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANGSYFDQ 358

Query: 725 SIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
            +    E + E        +   S   W +LK++V+  G+ N+  +AIAPT +I+ +   
Sbjct: 359 YLNNSFEPKSEKVKELLKNIKVPSPEDWAKLKEKVQQDGLYNAYRLAIAPTQSISYLQSA 418

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           + SI P    +  +   +        FL  E +                           
Sbjct: 419 TASIQPIISPIETRLYGNSMTYFPMPFLTKENEH-------------------------- 452

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                ++ +A++ID   LI+ ++  QK IDQ  S  LY+ +  + + L  +Y  A   GL
Sbjct: 453 -----LYKSAYQIDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYAHHKGL 507

Query: 898 KTTYYLRSR 906
           K+ YY+R++
Sbjct: 508 KSLYYVRTK 516


>gi|258646860|ref|ZP_05734329.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dialister invisus DSM 15470]
 gi|260404299|gb|EEW97846.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dialister invisus DSM 15470]
          Length = 622

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 140/676 (20%), Positives = 253/676 (37%), Gaps = 101/676 (14%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           L  +Y+          PQ F  RV+        E+ K+ +      +   F  +  TL+ 
Sbjct: 14  LEAKYYHEGET----TPQQFIDRVSSVFKGDFRERMKKYI------TDGDFSPAGRTLYA 63

Query: 361 SG---TRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +G        +S+C++   P D+L  IF +  E A +  Y GG+G + + +R  G+ +H 
Sbjct: 64  AGSRGKFKVSMSNCYILPSPEDNLESIFHSNYEIARIFSYGGGIGINISNLRPAGSRVHN 123

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
               S G + F+K+ N T   ++Q G R+GA    L   H D+ EFL +++    +  + 
Sbjct: 124 VARTSTGAVSFMKIFNTTGEVISQNG-RRGAQMVGLNCSHPDIYEFLHIKQ----NEEKL 178

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             MN +    D FM+ V                         +  Y         GE  +
Sbjct: 179 SSMNISILFTDEFMEAVRD-----------------------DKEYTLRFHVESTGE-NI 214

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSS 594
            R I A   +R+     ++ G P   F D  N            +  +N C E   N+ +
Sbjct: 215 ERTIRARDFFREFCETQWDWGDPGALFSDRLNDYHLLAGYDEYQIEITNPCGEFGGNAYN 274

Query: 595 EETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                CNLGSINL     +   +      +K    +   +  LD ++     T    +  
Sbjct: 275 ----ACNLGSINLYNMIDDKFGNAPSLNEEKFKQAVYDGIIALDEIVSYGYETQPLDENR 330

Query: 650 NH--THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
                 R++GLGL G   AL  + + Y S EA    +  M+ +   A+ +S + A+ +G 
Sbjct: 331 TCIDDWRSLGLGLFGVADALVAMKLAYGSREASAFMENVMKIMLLSALRSSCDRAKMKGT 390

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           +  ++                  E  ++  + +  +     L + ++T G+RN   +AIA
Sbjct: 391 FGRYRR-----------------EATEKSPIIQMVKELDGGLYEDIRTYGLRNGTLLAIA 433

Query: 768 PTATIANICGV-SQSIDPSYQNLYVKSN-----MSGDFTVVNSFLVNELKQRDLWDEAMI 821
           PT TI+ + G  S   +P Y+  Y +S      ++G F V    + + L+ R L      
Sbjct: 434 PTGTISLLMGSFSGGCEPLYKISYERSTHKMEEVNGSFRVYAHSVKDLLRYRHL------ 487

Query: 822 SDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877
                       +    D++++       + ++  M  +   +  QK++D + S  + L 
Sbjct: 488 -----------PLTLTDDEIREKFPWVIESHDVSFMDRVAMQAVMQKYVDNSISSTVNLK 536

Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           ++ + + +  IY  AW  G K     R               + K +  P          
Sbjct: 537 NDATPEDIYDIYLAAWESGCKGITVFRDGCRRGNILGIAAKKEEKADG-PKPAEGQPVCP 595

Query: 938 LGIPSSCTSDTECEVC 953
                +   +  C  C
Sbjct: 596 ECGGKNIRVEGHCAAC 611


>gi|291240499|ref|XP_002740156.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Saccoglossus kowalevskii]
          Length = 316

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/259 (36%), Positives = 146/259 (56%), Gaps = 14/259 (5%)

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           + SN  HR IG+G+ G   A  L+  P+ S EA+ +  +  E I + A+ AS ELA+  G
Sbjct: 63  RNSNMRHRPIGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDG 122

Query: 707 AYSSFK---GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
            Y S+K   G    +G+   D   +            T    WD LKK + T G+RNS  
Sbjct: 123 VYESYKFGDGCPVSKGILQYDMWDVTP----------TDLHDWDALKKDIATHGLRNSLL 172

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +A  PTA+ A I G ++S++P   N+Y +  +S +F VVN  L+ +L +  LW++ M + 
Sbjct: 173 LAPMPTASTAQILGNNESVEPYTTNIYSRRVLSKEFQVVNHHLLKDLTEMGLWNDDMKNL 232

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           L  ++GSI +I+ IPD +KK++ T +EI    ++  A+ R  +IDQ+QSLN+++ EP+  
Sbjct: 233 LIANNGSIQSIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYG 292

Query: 884 KLDFIYRQAWLMGLKT-TY 901
           KL  ++  AW  GLKT  Y
Sbjct: 293 KLTSMHFFAWKQGLKTGMY 311


>gi|312195035|ref|YP_004015096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EuI1c]
 gi|311226371|gb|ADP79226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EuI1c]
          Length = 1016

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 116/632 (18%), Positives = 228/632 (36%), Gaps = 28/632 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385
           G    + + E    E   +L    F  ++P  FN GT    Q+S+CF+  V D +  I  
Sbjct: 170 GYFASDEDAEIFEHELTYMLLHQMFSFNSPVWFNVGTPAPQQVSACFILAVDDTMESILN 229

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 230 WYREEGLIFKGGSGSGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 288

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+ EF++ +    D  R   D      +    +  V           
Sbjct: 289 RAAKMVVLDVDHPDIVEFVETKAREEDKVRALRDAGFDMDLGGKDITSVQYQNANNSVRV 348

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G  F++              +V   I A  L RK+ T  +E   P I + 
Sbjct: 349 TDDFMRAVQDGISFDLRARMDH--------RVIESIDARGLMRKIATAAWECADPGIQYD 400

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623
              N        G + +SN C+E        + + CNL S+NL+    ++  FD +    
Sbjct: 401 GVINDWHTTPEAGRISASNPCSEYMH----LDNSSCNLASLNLMRFLRSDLTFDVEGFVH 456

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
            +   +  +D  I        +  +    +R +G+G     + L      Y S     +A
Sbjct: 457 AVELIITAMDISICFADFPTPQITEVTRAYRQLGIGYANLGALLMASARAYDSEGGRTLA 516

Query: 684 DESMEFISFHAISASVELAQERGAYSSF----KGSLWDQGVFPIDSIGLLAEVRDELAMN 739
                 ++  A   S ELA   G Y  +     G           +  + +   ++  + 
Sbjct: 517 AAITSLMTGTAYRRSAELAGVVGPYDGYARDADGHRRVIRKHAAANDAVRSVHSEDARIL 576

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG- 797
             +   W +     +  G RN+    +APT TI       +  I+P    + +K  + G 
Sbjct: 577 AAAGQEWAKCLTIGERDGWRNAQASLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGA 636

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA---FEID 852
              +VN  +   L+     +E + + ++Y    G + +   +  +  ++   A     I 
Sbjct: 637 SMKIVNQTVPAALRALGYTEETLEAIVEYIAEHGHVIDAPGLRPEHYEVFDCAIGERAIA 696

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           P+  +   +  Q ++  A S  + +    + ++++ IY + W +GLK     R       
Sbjct: 697 PIGHVRMMAAVQPFLSGAISKTVNMPETATVEEVEEIYVEGWKLGLKALAIYRDNCKVGQ 756

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
             + ++G    ++        ++  S      
Sbjct: 757 PLTDVRGAKRSVDEAKAIADANAGTSAAPAPV 788


>gi|317503716|ref|ZP_07961733.1| ribonucleoside-diphosphate reductase [Prevotella salivae DSM 15606]
 gi|315665237|gb|EFV04887.1| ribonucleoside-diphosphate reductase [Prevotella salivae DSM 15606]
          Length = 861

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 135/726 (18%), Positives = 261/726 (35%), Gaps = 119/726 (16%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +   E + +      E + LL
Sbjct: 20  FDGDELAARVWVNKYAMKDSYGNIYERSPEDMHRRIAKEITRVEAKYKNPMSEQEVFELL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFRYIVPAGSPMTGIGNNQQVASLSNCFVIGLDGKADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     +  +    N +  + D FM     +  +    P +              
Sbjct: 199 AFIDAKM----EEGKVTGANVSVKLDDDFMNAAINDKTYVQQWPIDAE------------ 242

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       + KV ++I A  LW K++   +++  P + F D     S       + 
Sbjct: 243 ------------KPKVQKEIEARKLWEKIVHNAWKSAEPGVLFWDTIIKESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L SINL ++          FD++K    ++ A R++D++
Sbjct: 291 FRTVSTNPCGEIPLCPYDSCRLLSINLYSYVEKPFTKEARFDFEKFKKHVQFAQRIMDDI 350

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK K+ +   R  G+G+      L  L 
Sbjct: 351 VDLEMEKINLIIEKIKQDPESNEVKDAEYHLWEKIKRKSGMGRRTGVGITAEGDMLAALG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + +    + ++ +A  +SV +A+ERGA+  +         F +        
Sbjct: 411 LRYGTQEATDFSVLVHKTLALNAYRSSVTMAKERGAFEIYDAKRESNNPFVLRI------ 464

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                      +    EL   ++  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 465 -----------KEADPELYADMQQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 513

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   +  ++      E           S  
Sbjct: 514 RRRKVNPNDADVHVDFVDEVGDSFEEYIVYHRKFLKWMQVNGYDTEKRY--------SQE 565

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+ +        ATA ++D +  ++     QKW+D + S+ + L ++     ++ +Y +
Sbjct: 566 EIDNLVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDETLVNRLYVE 625

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK---LNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R  S   V  S  K    K        V +          P       
Sbjct: 626 AWKSGCKGCTIYRDGSRAGVMISVSKKDKKKGTHAEGAEVREEEPKEKDCKQPEVTEVRP 685

Query: 949 ---ECE 951
              EC+
Sbjct: 686 KELECD 691


>gi|262285103|gb|ACY41131.1| ribonucleotide reductase subunit 1 [Wood mouse herpesvirus]
          Length = 783

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 166/813 (20%), Positives = 295/813 (36%), Gaps = 105/813 (12%)

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            A I   + +         +  R L  K+R EV T    +        +      +   Y
Sbjct: 18  DAAIAELKLMAGHSHEANLLAGRLLHFKMR-EVCTQSVSQYLDVFARVLDEGLCAFIGNY 76

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
            +  +   +       F  V     L   R            YD Y L       E    
Sbjct: 77  SQ-SLDEMVQRYVSGGFAAVKENGYLAAAR-----------FYDTYVLRNED-IYESVPH 123

Query: 320 FFMRVAMGLALKETEKEKRAVE---------------------FYNLLSSFHFMCSTPTL 358
            FMR+A   A    + E                          F+ +++S    C+TP +
Sbjct: 124 MFMRIATFCAYYCIQNECLFKTLKHMELDRGNVVENAIDLITYFFEMVASQQVCCATPVM 183

Query: 359 FNSGTRHPQLSSCFLT-TVPDDLYGIFGA-LQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
            ++G R   LSSCF+     D       A   E   L     G+G D T           
Sbjct: 184 RSAGLRDANLSSCFILAPTLDSEEKTVEAVFSELTKLLACKSGVGMDLTTYS-------- 235

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
                + +   LK  +      N    R  +V AY+E WH ++ +FL  +     +  R 
Sbjct: 236 ---HGKNLHALLKAMDGQICYFNDHNIRPVSVAAYMEIWHTNIMDFLTAKLPENPE--RC 290

Query: 477 HDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
            ++     IP++F +    +  + W LF P +   L   YG  F IAY     Q     +
Sbjct: 291 SNIFQGVCIPEIFFRTYKNDPESNWYLFDPSKAEILTHSYGYMFSIAYAGLVEQGAYEAV 350

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV----VHSSNLCTEITL 590
              + +        +++ + +TG P++  K   N     +        ++ +NLC E+  
Sbjct: 351 VPIKSV-----MFALVSCIIKTGGPYVLNKKAINRHDWHEWSSHQSRAINCANLCAEVIQ 405

Query: 591 NSSSEETAVCNLGSINLLAHFANNQF--------------DYDKLASTIRTAVRVLDNVI 636
                  + CNL +I L     ++++                +KL      AV +++  I
Sbjct: 406 YPGDN-VSTCNLANICLPKCLEDDKYTSGKSCLLTYEREFSIEKLERATEAAVFIINACI 464

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
                  ++A++   + R++G+G+ G      L+ + Y    +  +  +  E + F+A++
Sbjct: 465 YGGTLPTQRARRG-QSDRSMGIGVQGLADTFALMGLGYFDGGSEILDQKIAETLYFNALN 523

Query: 697 ASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754
            S+ L +  +   Y++++ S    GV       + + +         +R  W++L +  +
Sbjct: 524 TSINLVKIGKGEPYANYEESKHAIGVLHWHDWDMCSPMV-------YTRDEWEDLARSCE 576

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ NS  +A  PTA    I G S S  P Y ++  K +   +    N  L++ +  R+
Sbjct: 577 VHGVYNSQFVAYMPTAGTGQITGYSDSFYPFYSSMSSKVSNKEEILRPNMTLMSRMSDRE 636

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
                 +  L+  +  I  +        +I  +AF+ DP   +  A  R  +IDQ+QS+ 
Sbjct: 637 ------VQLLRECNWDIAKLPEPLLQKYRIFLSAFDYDPSLYVRRAMLRAPFIDQSQSMT 690

Query: 875 LYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRS-ATSVEKSTLKGVDGK------- 922
           L+L+E    S   +  +    W  GLKT  YY R R  ATS E   ++    +       
Sbjct: 691 LFLNEDYASSASNIKNLLMYGWECGLKTLMYYCRIRKTATSNEFECVRRNSQQKYVNCAG 750

Query: 923 -LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              A      ++     G   S +S   C  CQ
Sbjct: 751 GEGAEGEEPSDNCIKVEGAMCSLSSGASCLHCQ 783


>gi|322434426|ref|YP_004216638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX9]
 gi|321162153|gb|ADW67858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX9]
          Length = 1149

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 122/637 (19%), Positives = 222/637 (34%), Gaps = 59/637 (9%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
           +   +G   PQ S+CF+ +V D L  I    +   ML K+  G G++ + +RG    + G
Sbjct: 175 SFSTTGYTKPQCSACFINSVQDSLDSILTLAKTEGMLFKWGSGAGSNLSSIRGSMETLSG 234

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
             G + G + F++  +  A  +  GGK R+ A    L   H D+ +F++ +         
Sbjct: 235 -GGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVVLNVDHPDIVDFIECKSKEEAKAYS 293

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
                     PD         +     + +    + D +    E   E   R     E  
Sbjct: 294 LIAAGYDGSGPD-----SEAYSSIFFQNANNSVRVTDEFMSAVERDAEFSTRTVK--ERT 346

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
                 A  +  K+    +  G P + +    N     ++   +++SN C+E        
Sbjct: 347 PVTTGPARDIMNKIAENTWACGDPGMQYDTTINKWHTSKNTARINASNPCSEYMF----L 402

Query: 596 ETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
           + + CNL S NL+    +  QFD     S I      ++ ++D   +  E   K++H +R
Sbjct: 403 DDSACNLASFNLIKFVDSRGQFDIPAYRSAIAIVTTAMEIIVDSAGYPTEMIAKNSHDYR 462

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-----YS 709
            +GLG     + L    +PY S    + A      +   A   S  +A+           
Sbjct: 463 PLGLGYANLGALLMSFGLPYDSDAGRDFAGTLTAILCGDAYYQSALIAETCPPLLAATPF 522

Query: 710 SFKGSLWDQGVFPIDSIGLLA-------------------EVRDELAMN------RTSRL 744
             + +    G  P   +                          +  ++       + S+ 
Sbjct: 523 CQQATPEQGGACPGFYMNREPFLDVIRMHRAEVNKIGKSKHSNEPFSVPQLDSLIQASKD 582

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD      +  G RNS    +APT TI  +    +  I+P    + Y K    G   +V
Sbjct: 583 AWDAALIHGEHYGFRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGMIKIV 642

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAF-------EIDP 853
           N+ + + L +    D  M + + Y D  G+I     I  +   +   +F        I  
Sbjct: 643 NNTVPSALTKLGYSDADMHAIVSYIDATGTIEGAPAIKAEHLAVFDCSFKPAKGTRSIHY 702

Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           M  I+  +  Q ++  A S  + L  + S + +   Y ++W  G+K     R  S  +  
Sbjct: 703 MGHIKMMAAAQPFLSGAISKTVNLPTDCSVEDIAEAYLESWRQGIKAVAIYRDGSKGAQP 762

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
              L     K  A        ++ +    +    D  
Sbjct: 763 ---LNVSTDKQKADDKETARKASVAGAEAAQVEIDET 796


>gi|87306454|ref|ZP_01088601.1| ribonucleotide reductase [Blastopirellula marina DSM 3645]
 gi|87290633|gb|EAQ82520.1| ribonucleotide reductase [Blastopirellula marina DSM 3645]
          Length = 1002

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 126/611 (20%), Positives = 218/611 (35%), Gaps = 68/611 (11%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
             +PQ S+CF+  V DD+  I       AML KY  G G D + +R     +    GK  
Sbjct: 172 YAYPQASACFIQGVQDDMQSIMSLAAAEAMLFKYGSGSGTDLSTLRSRHE-VLSGGGKPS 230

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR------ 475
           G + F++V +  A  V  GGK R+ A    L+  H D+ +F+  +       R       
Sbjct: 231 GPLSFMRVYDQVAGVVKSGGKTRRAAKMQSLKIEHPDILDFIQCKAKEEAKARILIEHGG 290

Query: 476 --------------THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
                           + N +  + D FM+ V Q+  W      +  +    Y       
Sbjct: 291 YDADFNGEAYNSILFQNANLSVRVSDPFMEAVEQDQPWKTHWITKPDNEGPQY------- 343

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                               A  L ++M    ++ G P + +    N        G +++
Sbjct: 344 -------------------PARELLQQMAESAWQCGDPGVQYDTTINAWHTCPQAGRINA 384

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINC 640
           SN C+E        + + CNL S+NL+   A +  FD  + A+  R      + ++D   
Sbjct: 385 SNPCSEYMF----LDDSACNLASLNLMRFRAADGTFDASRFAAACRLLFLAQEILVDHAG 440

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +      +++H  R +GLG     S L    +PY S  A          +   A+  S E
Sbjct: 441 YPTATIAENSHRFRPLGLGYTNLGSLLMASGLPYDSDSARGTCAVITAILHGAALRTSSE 500

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMR 759
           +A  RGA++ F  +  D           L EV++    +++ +R  W +++   +  G R
Sbjct: 501 IAASRGAFAGFAENREDMLTVIDKHAAALGEVKNAPANLSQFARELWGQVQIAGQRDGFR 560

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWD 817
           N+    +APT TI+      +  I+P       K    G    +VN  +   L     + 
Sbjct: 561 NAQATVLAPTGTISFFMDCDTTGIEPELALSKTKRLAGGGSLQIVNQTVKLGLAALG-YS 619

Query: 818 EAMISDLKYH---DGSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWI 867
              I  +  +    GS+     + +        AF        I     ++  +  Q ++
Sbjct: 620 PTQIDAIADYLGRTGSLTGAPDLRESDLPTFDCAFPAEPGGRAISWQAHVQMMAAAQPFL 679

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             A S  + +  E +   +   YR  W +GLK+    R  S  S   S            
Sbjct: 680 SGAISKTVNMPQEATPDDIAEAYRWGWKLGLKSLSIYRDNSKQSQPLSAGDDKPSSAAHA 739

Query: 927 PVTDPNSSTHS 937
              +      +
Sbjct: 740 SQPNRARLPET 750


>gi|332158632|ref|YP_004423911.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp.
            NA2]
 gi|331034095|gb|AEC51907.1| ribonucleotide-diphosphate reductase alpha subunit [Pyrococcus sp.
            NA2]
          Length = 1703

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 162/351 (46%), Gaps = 17/351 (4%)

Query: 565  DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYD 619
            +     +   H   + +  +           E   CNL SINL             FD+D
Sbjct: 1237 EIVYDFTVPNHHMYISNGFMSHNCGEEP-LYEYESCNLASINLAKFVKYDENGKPYFDWD 1295

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            + A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E 
Sbjct: 1296 EYAYVIQKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEG 1355

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +   +  E+++F+A   SVE A++RG +  +  + + +G  P++               
Sbjct: 1356 FKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYDKTEYPEGKLPVE----------GFYHP 1405

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                LPWD+L + +K  G+RN+      PT +++ I   S  I+P Y  +Y KS   G+F
Sbjct: 1406 EIWNLPWDKLVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPVYALVYKKSVTVGEF 1465

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
              V+     ELK+R L+ E ++  +  + GS+  +E IP+D++++  TA +I  +  I +
Sbjct: 1466 YYVDPVFEEELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIA 1525

Query: 860  ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             +  Q W+  + S  + + ++ + + +   Y  A  +G K     R  S +
Sbjct: 1526 QASIQMWLTDSASKTINMPNDATVEDVKAAYLIARFLGCKGVTVYRDGSLS 1576



 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 153/399 (38%), Gaps = 85/399 (21%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V        +R +  +  + +  V R+      
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV-------GVRDERKLDEVVKNIVKRI-NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +    +            
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKRILNKKE--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  +    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SVNALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              E      + R L E++   +L  +          + +  Y +   R           
Sbjct: 129 KRDENGNIIESPRELFERVA--ILAVIPDLLYDERVFDKEGNYKQDLKRV-------EYY 179

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----- 324
            E+   FD  Y               +G   L   +F  +     E+ +   M+V     
Sbjct: 180 LENFEKFDGKY--------------SIGKYKLNKYHFERMVNLYRELAEKGKMKVSIDEF 225

Query: 325 -AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
            +M    +  + EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LSMLERGEFDKYEKEIDEYFRLMTNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
             A  + AM+ K  GG G +++ +R  G  +  T G + 
Sbjct: 286 MKAAHDVAMIQKMGGGTGINFSKLRPEGDLVGTTTGAAC 324



 Score = 69.5 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 69/169 (40%), Gaps = 32/169 (18%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDM 479
           + G + F+ + +  +  + QGG R+GA    LE WH D+E+F+  + KN G +     ++
Sbjct: 760 NSGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNVLSNFNI 819

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           +   W  + F + + +   + L +P                              +V ++
Sbjct: 820 SVGIW--EDFWEALKEGKKYPLINPRT---------------------------GEVVKE 850

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCT 586
           +    L+ ++  M +    P + F D  N R+  +    G + ++N C 
Sbjct: 851 VDPKTLFEELAYMAWAKADPGVIFFDVINRRNVLKKAKGGPIRATNPCV 899


>gi|30348566|emb|CAC84358.1| RRlarge [Saimiriine herpesvirus 2]
          Length = 767

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 172/810 (21%), Positives = 296/810 (36%), Gaps = 99/810 (12%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +I +   +++    + +            E+   ++ K       E    Y   F  
Sbjct: 3   QETIISNLIDMLKVSAGWDREA---------NEISGRLFHKLMDMNSTETISQYMLLFGP 53

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGL---QILYDRYFLHI---NG 311
            +E  +   L      + ++  +  + +   DF      G+   +  YD Y L     N 
Sbjct: 54  LLEPHI---LEFIQNYEQEIDEVCLEYRASYDFMCLRNCGILPAKRFYDTYVLPPKTENN 110

Query: 312 SRIEMPQAFFMRVAMGLALK----------------------ETEKEKRAVEFYNLLSSF 349
            + E    FF R+A   A                                  FY ++SS 
Sbjct: 111 GKYESIPHFFARIAAYCAWNCIMCESLKDTLVYIQKRDWNVEIKTDMHIFKYFYKVISSQ 170

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGA-LQENAMLAKYSGGLGNDWTPV 407
              C+TP + ++G     LSSCF+     D       +   E A L     G+G D T  
Sbjct: 171 LVCCATPVMRSAGVAGENLSSCFIIAPTLDTEKSTISSIFGELAPLLASRSGVGVDVTKF 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
              G +IH            LK+ N      N    R  +V AY+E WH  + EFL  + 
Sbjct: 231 SFSGKNIHSC----------LKLINAQVEFFNDKSVRPVSVAAYIEVWHCQIHEFLSAKL 280

Query: 468 NTGDDRRRTHDMNTANWIPDLF--MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
               D  R + +     +P LF  M  V  N  W LF P +  +L  LYG EFE  Y   
Sbjct: 281 PENPD--RCNSIFQGVCVPSLFFKMYEVDPNGLWYLFDPKDAPNLVKLYGFEFEEEYLRL 338

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                  E K  + ++  +L   ++  + +TG P++  K+  N     +  G   + +  
Sbjct: 339 V-----SEKKYKQSVTLKSLMFSLINTIIKTGSPYVISKEAMNKHHWYETQGEAINCSNL 393

Query: 586 TEITLNSSSEETAVCNLGSINLLAH----------FANNQFDYDKLASTIRTAVRVLDNV 635
               +    + T+ CNL ++ L                 QFD+ KL   ++ AV  + N 
Sbjct: 394 CAEIVQQPKQFTSTCNLANVCLPKCLNSSNFPYTCSNTAQFDFSKLEYAVQAAV-FIINA 452

Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
             ++      +       R++G+G  G       +   Y   E+  +  +  E + + A+
Sbjct: 453 CILSPSPT-SSATVGQRERSMGIGCHGLADVFSEMGYGYLDLESECLDRDIFETMYYTAV 511

Query: 696 SASVELA--QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
             S E+    +   ++ F+ S    GVF   +   + +        R     W  L+  +
Sbjct: 512 KTSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMPQ--------RVPMKQWIHLQDNI 563

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813
           K  G+ NS  +A+ PTA  + + G + S  P + N+  K +   +    N   +  +K +
Sbjct: 564 KKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEEIMKPNITFLKNVKPQ 623

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
           DL        ++++ G +  +        K   TAF+  P   +  AS R  ++DQ+QSL
Sbjct: 624 DLCT------VRFYGGDVSMMPEEVSTRYKHFLTAFDYCPEAQMRRASIRAPYVDQSQSL 677

Query: 874 NLYLDEPSG---KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP-- 927
            L+L E +    K L  +    + +GLKT  YY R +  T + +     +D  +      
Sbjct: 678 TLFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVKKTTKLLQLECLKLDEHMKKDAQI 737

Query: 928 --VTDPNSSTHSLGIPSSCTSDT-ECEVCQ 954
                      S     +C  D  EC  CQ
Sbjct: 738 VVSDLARELLDSHKTEDTCPLDQSECIACQ 767


>gi|9629623|ref|NP_044899.1| ribonucleotide reductase large [Murid herpesvirus 4]
 gi|6625624|gb|AAF19325.1|AF105037_57 61 [murid herpesvirus 4]
 gi|2317993|gb|AAB66451.1| ribonucleotide reductase large [murid herpesvirus 4]
          Length = 783

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 162/820 (19%), Positives = 299/820 (36%), Gaps = 105/820 (12%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +   +   A I   + +         +  R L  K+R EV T    +   A    +    
Sbjct: 11  VQTVNAIDAAIAELKLMAGHSHEANVLAGRLLHFKMR-EVCTQTVAQFLDAFSSVLDEGL 69

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
             +   Y +  +   +       F  V     L   R            YD Y L  N  
Sbjct: 70  CAFIGNYSQ-SLDEMVQRYVSGGFAAVKENGYLAAAR-----------FYDTYVLR-NDV 116

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVE---------------------FYNLLSSFHF 351
           + E     FMR++   A    + E                          F+ +++S   
Sbjct: 117 KYESVPHMFMRISAFCAYHCIQNECLFKTLKHMELDRGNVVENAMDLITYFFEMIASQQV 176

Query: 352 MCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGA-LQENAMLAKYSGGLGNDWTPVRG 409
            C+TP + ++G R   LSSCF+     D       A   E   L     G+G D +    
Sbjct: 177 CCATPVMRSAGLRDANLSSCFIFAPALDSEEKTVDAVFSELTKLLACKSGVGMDLSTYS- 235

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
                       + +   LK  +      N    R  +V AY+E WH ++ +FL  +   
Sbjct: 236 ----------HGKNLHAVLKALDGQITYFNDHNIRPVSVAAYMEIWHTNIMDFLTAKLPE 285

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             +  R  ++     IP++F +    +  + W LF P +   L + YG  F IAY     
Sbjct: 286 NPE--RCGNLFQGVCIPEIFFRTYKNDPESNWYLFDPKKAEVLTNTYGYMFSIAYAGLVE 343

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV----VHSSN 583
           Q     +   + +        +++ + +TG P+I  K   N     +        ++ +N
Sbjct: 344 QGAYEAVVPIKSV-----MFALVSCIIKTGGPYILNKKAINRHDWHEWSTHQYRAINCAN 398

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF--------------DYDKLASTIRTAV 629
           LC E+         + CNL +I L     +++F                ++L      AV
Sbjct: 399 LCAEVIQYPGEN-VSTCNLANICLPKCLEDDKFVSGKSCLLTYEREFSIERLERATEAAV 457

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
            +++  I       ++A++   + R++G+G+ G      ++ + Y    +  +  +  E 
Sbjct: 458 FIINACIHGGTLPTQRARRG-QSDRSMGIGVQGLADTFAMMGLGYFDAGSEILDQKIAET 516

Query: 690 ISFHAISASVELAQ--ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           + F+A++ S+   +  +   Y++++ S    GV       + + +         +R  W+
Sbjct: 517 LYFNALNTSINFVKIGKGEPYANYEQSKHSIGVLHWHDWDMCSPMV-------YTRDEWE 569

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L +  +  G+ NS  +A  PTA    I G S S  P Y ++  K +   +    N  L+
Sbjct: 570 DLARSCEVHGVYNSQFVAYMPTAGTGQITGYSDSFYPFYSSMSSKVSNKEEILRPNMTLM 629

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
           + +       ++ +  L+  +  I  +        +I  +AF+ +P   +  A  R  +I
Sbjct: 630 SRM------SDSEVQTLRECNWDIAKLPEPLLQKYRIFLSAFDYEPSLYVRRAMLRAPFI 683

Query: 868 DQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRS-ATSVEKSTLKGVDGK 922
           DQ+QS+ L+L+E    S   +  +    W  GLKT  YY R R  ATS E   ++    +
Sbjct: 684 DQSQSMTLFLNEDYASSASNIKNLLMYGWECGLKTLMYYCRIRKTATSNEFECVRRNSQQ 743

Query: 923 -----LNAVPVTDPNSST---HSLGIPSSCTSDTECEVCQ 954
                 +         S     + G   S +    C  CQ
Sbjct: 744 KYVNCADGEGAGGEEPSENCIKAEGATCSLSVGASCLHCQ 783


>gi|299139759|ref|ZP_07032932.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX8]
 gi|298598383|gb|EFI54548.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acidobacterium sp. MP5ACTX8]
          Length = 1087

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 120/636 (18%), Positives = 219/636 (34%), Gaps = 56/636 (8%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             +           +G   PQ S+CF+ +V D L  I    +   ML K+  G G++ + 
Sbjct: 169 WHWDATQGEVAFSVTGYTRPQCSACFINSVNDSLDSILTLAKTEGMLFKWGSGAGSNLSA 228

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDL 465
           +RG    + G  G + G + F++  +  A  +  GGK R+ A    L   H DVE+F+  
Sbjct: 229 IRGSMETLSG-GGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNVDHPDVEDFIQC 287

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +                   PD               + +    + D + +  E      
Sbjct: 288 KVKEERKAWSLMQAGYDGSGPD-----SEAFTSIFFQNANNSVRVTDEFMQAVENDGMFT 342

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            R     + +  ++I A  L  ++    ++ G P + +    N     ++   +++SN C
Sbjct: 343 TRTVK--DKQPVKEIRARDLMHQIAEATWQCGDPGMQYDTTINRWHTSKNTARINASNPC 400

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           +E        + + CNL S NLL       QFD       +      ++ ++D   +  E
Sbjct: 401 SEYMF----LDDSACNLASFNLLKFLTPGGQFDIPSYRHAVAVLTTAMEIIVDAAGYPTE 456

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +  K++H +R +GLG     + L    +PY S      A      +   A + S  +A +
Sbjct: 457 QIAKNSHDYRPLGLGYANLGALLMDRGLPYDSDAGRAYAATLTAILCGDAYAQSARIAGD 516

Query: 705 RGA----YSSFKGSLWDQGVFPIDSIGLLA------EVRDEL------------------ 736
                      + +    G  P   +            R E+                  
Sbjct: 517 CPPLGAATPLTQQTGVQGGACPGFYVNREPFLDVIRMHRAEVNNIDKSLKSSKEPFVAPQ 576

Query: 737 --AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVK 792
              +   S+  WD      +  G RNS    +APT TI  +    +  I+P    + Y K
Sbjct: 577 LEELKAASQNAWDTALALGEKHGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKK 636

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAF- 849
               G   +VN+ +   L +    +  +   + Y D  G+I     +  +   +   +F 
Sbjct: 637 LVGGGMIKIVNNTVPGALFKLGYKESEVEGIVNYIDATGTIEGAPSLKPEHLAVFDCSFK 696

Query: 850 ------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
                  I     ++  S  Q ++  A S  + L ++ S   +   Y +AW +GLK    
Sbjct: 697 PAKGTRTIAWTGHVKMMSATQPFLSGAISKTVNLPNDCSVDDIAEAYTEAWRLGLKAVAI 756

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
            R  S  +   +     D       V     +    
Sbjct: 757 YRDNSKGTQPLNVAAQTDADKKGTSVDSTKVNEEVT 792


>gi|162448129|ref|YP_001621261.1| ribonucleoside-diphosphate reductase subunit alpha [Acholeplasma
           laidlawii PG-8A]
 gi|161986236|gb|ABX81885.1| ribonucleoside-diphosphate reductase, alpha chain [Acholeplasma
           laidlawii PG-8A]
          Length = 700

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 147/666 (22%), Positives = 271/666 (40%), Gaps = 55/666 (8%)

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEM 316
            +E     +          +  + +     +     Y+G    Y+ Y L      + +E 
Sbjct: 60  LVENDYYEKEFLAKYTMEQIQTIYDIAYAAKFRFPTYMGAFKFYNDYALKDRTGKNYLER 119

Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375
            +    R+A+           +A     LL S  F  +TPTL N+G     +  SCFL  
Sbjct: 120 YED---RLAVNALYHANGDFDKARNLIRLLISQDFTPATPTLLNTGKSKRGEFVSCFLLE 176

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
             D L  I    + +  L+K  GG+  + T +R  G  I G    S+GV+  +K+ ++  
Sbjct: 177 AGDSLNDISRISEFSMQLSKVGGGVSINLTNLRAKGEAIKGIPNVSKGVVGVVKLLDNNF 236

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
              +Q G+R GA   YL  +H D+E+FL  +K   DD  R   ++    IPD FM+    
Sbjct: 237 RYADQMGQRTGAGAVYLNVFHADIEDFLATKKLNADDDIRAKTLSMGVVIPDKFMELARD 296

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    LF P  V + +     +  I  +++        +   RK++   +   +  +  E
Sbjct: 297 NKDMWLFYPHTVFEQYGKDFADISIDMDHWYDILADNPLVRKRKVNPRKILDMIAQLQGE 356

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG--------SINL 607
           +G+P+I F D  N  +P      V  SNLCTEI   + +                 S NL
Sbjct: 357 SGYPYIMFSDNVNKANPL--DMPVKFSNLCTEILQPTITSHYGDYGANNDEIGMDISCNL 414

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDN-VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            +    N   ++ +  T+  A+ V+++     +   +    K+N  +R++G G+MG    
Sbjct: 415 ASGHMGNMMKHNTIKETVFGAMDVMNSVSNQTDIKHVPAVAKANRLNRSVGFGIMGHHGY 474

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS 725
           +   +I Y S E +++ D     ++++++  S+E A+E    +  F+ S +  G +    
Sbjct: 475 IAENYIMYGSDENIDLIDVFFNIVNYYSLVHSMEKAKETGEKFHRFEKSKYADGSYFDGR 534

Query: 726 IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             +L +      + +     +   W +LK+ V T G+ NS+ +A+AP  +I  +   + S
Sbjct: 535 GQILPKTDKVKELFKNVYIPTDDDWLQLKEDVMTHGLYNSHRLAVAPNGSIGYVMSATPS 594

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           + P  Q +  ++  +         +                                   
Sbjct: 595 LTPIKQLVEERTYGNSKTYYPMPAVEKAA------------------------------- 623

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTT 900
             ++ TA+ +D   LI+  +  QK +DQ  S  L +  + + ++L   Y  A   G+KT 
Sbjct: 624 -FMYETAYRMDTYRLIDVIATAQKHVDQGISFELCITSDITTRELQKYYLYAHYQGIKTL 682

Query: 901 YYLRSR 906
           YY R++
Sbjct: 683 YYTRTQ 688


>gi|297519662|ref|ZP_06938048.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli OP50]
          Length = 513

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 139/530 (26%), Positives = 230/530 (43%), Gaps = 56/530 (10%)

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL  
Sbjct: 1   KRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHA 60

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +Y
Sbjct: 61  HHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVY 117

Query: 515 GKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
           GK F   A   +  +    E    + ++A   ++++  + FE+G+P+I ++D  N  +P 
Sbjct: 118 GKPFADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI 177

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIR 626
              G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ 
Sbjct: 178 --AGRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVE 235

Query: 627 TAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           TAVR L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  + 
Sbjct: 236 TAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNL 295

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR 740
               I++HA+  S+ LA+ER   ++ FK S +  G +                 EL    
Sbjct: 296 YFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRS 355

Query: 741 ----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNM 795
                +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    
Sbjct: 356 GITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGK 415

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G       F+ N                               +   ++  A+EI    
Sbjct: 416 TGRVYYPAPFMTN-------------------------------ENLALYQDAYEIGAEK 444

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 445 IIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 494


>gi|39938540|ref|NP_950306.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma
           OY-M]
 gi|39721649|dbj|BAD04139.1| ribonucleotide reductase alpha subunit [Onion yellows phytoplasma
           OY-M]
          Length = 769

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 151/700 (21%), Positives = 275/700 (39%), Gaps = 65/700 (9%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L +  ++           L  E      E         +      +  +   + Y++
Sbjct: 100 KEALQSFLQEGVLPKLKRFATL-QEKLTFLQENEYYESAFLQKYTHSQIKEIYQ-IAYQK 157

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
           +F F  ++G    Y  Y L        +E  +    R+++          + A      L
Sbjct: 158 NFTFPTFMGAFKFYHDYALKTRDKQHYLETYED---RLSVNALYHAKGDFEIAKRLIVSL 214

Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            +  F  +TPTL N+G +H  +  SCFL    D L  I    + +  L+K  GG+  + T
Sbjct: 215 INQDFTPATPTLLNTGKKHRGEFVSCFLLEAGDSLNDIARINEFSMQLSKIGGGVSINIT 274

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  G  I G  G  +GV+   K+ + +    +Q G R GA   YL  +H D+ +FL  
Sbjct: 275 NLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYADQIGLRTGAGAVYLNVFHSDIIDFLST 334

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYE 523
           +K + D+  R   ++    +P+  ++    N     F P  V      YGK F       
Sbjct: 335 KKLSADEDVRVKTLSLGVVVPNKMIELARNNEVMYTFFPHTV---FLEYGKNFADIAVDM 391

Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +Y         KV +K I+   L   +  M  E+G+P++ F D  N          V  S
Sbjct: 392 DYWYDILVANPKVQKKAINPRQLLELIAHMQGESGYPYLMFCD--NTNQANTSDLKVKFS 449

Query: 583 NLCTEITLNSSSEETAVCNLG---------SINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           NLCTEI   + +      +           S NL +    N    + +  T+  A+ V++
Sbjct: 450 NLCTEILQPTITSHYKDYHQTQQDEIGMDVSCNLASGHMGNMITNNTIQETVFMAMEVMN 509

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V +  N   +    K+N  +R++G G+MG    L   +I + S E  ++ D     ++F
Sbjct: 510 CVSENTNISYVPAVAKANFINRSVGFGIMGHHGFLAQNYIAFGSEENKDLIDVFFNAVNF 569

Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPWD 747
           +++  S   A+     +  F+ S +  G +  +   +L +     +    +   ++  W 
Sbjct: 570 YSLLHSCNKAKTTGKKFYRFEQSKYADGSYFDNRGEILPKTAKIKKMFQNITLPTQKDWH 629

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +LK+ V   G+ NS+ +A+AP  +I  I G + S+ P  Q +  ++  +         L 
Sbjct: 630 QLKQDVMQFGLYNSHRLAVAPNGSIGYIMGATPSLTPVKQLVEERTYGNSKTYCPMPALK 689

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
                                               ++ TA++++   LI+  +  QK +
Sbjct: 690 Q--------------------------------TSFMYTTAYKMNKYDLIDVIAIAQKHV 717

Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           DQ  S  L +  + + ++L   Y  A    +KT YY R++
Sbjct: 718 DQGISFELGITSDITTRELQKYYLYAHHKKIKTLYYTRTQ 757


>gi|330945451|gb|EGH47018.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 317

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 217/316 (68%), Positives = 256/316 (81%), Gaps = 1/316 (0%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S+GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMN
Sbjct: 1   SKGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMN 60

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRK 539
           TANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+F+ 
Sbjct: 61  TANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKT 120

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AV
Sbjct: 121 IQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAV 180

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           CNLGSINL  H  + + D DKL  T+  AVR+LDNVIDIN +++ +AK SN  HR +GLG
Sbjct: 181 CNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLG 240

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +MGFQ AL+L HIPY S  AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G
Sbjct: 241 IMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKG 300

Query: 720 VFPIDSIGLLAEVRDE 735
           + P+DS  +L E R E
Sbjct: 301 ILPLDSQQILIEQRGE 316


>gi|126698858|ref|YP_001087755.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile 630]
 gi|255100279|ref|ZP_05329256.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-63q42]
 gi|255306218|ref|ZP_05350390.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile ATCC 43255]
 gi|115250295|emb|CAJ68117.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile]
          Length = 729

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 157/780 (20%), Positives = 295/780 (37%), Gaps = 153/780 (19%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I+  DGT   F+  ++E  V +A    +    + +  +  + + +  +  + +   +  
Sbjct: 3   YIIKRDGTKELFSKSKIEDAVYKASINSEGGVDRELAYDISRKIANDYNSME-KCLSVEE 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            + ++E            L+E  R+++                          YI    +
Sbjct: 62  IQDIVEV----------LLMESNRKDIA-----------------------KHYILYRER 88

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +     +FD   L   +                 ++Y    NG   E    +  R++
Sbjct: 89  RSEIRTKAWEFD--ELQKSI---------------WKNKY--RHNG---ESFDEWIKRIS 126

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLT-TVPDDL 380
                  + +  + +          F+ +   L N G +        S+C++     D +
Sbjct: 127 -----NNSSRISKLIR------QKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSI 175

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF   ++ A    Y GG+G D + +R  GA ++     + G + F+++ + T   +  
Sbjct: 176 EDIFDTAKKLARTFSYGGGVGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTG-LIG 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R+GA+   ++  H ++E+F+D++     D  +    N +  + D FM+ V +     
Sbjct: 235 QRGRRGALMISMDVNHPEIEDFIDIKT----DLEKVTKANISVRVTDEFMQAVREK---- 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                                Y         GE K+ + ++A  L+ K +   ++   P 
Sbjct: 287 -------------------KLYNCTFEVETTGE-KIVKIVNAYDLFNKFVKNNWDYAEPG 326

Query: 561 ITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHF-----AN 613
           I F D     +             N C E  L S       C LGSINL          +
Sbjct: 327 ILFWDKIKTYNFMSEDKNFCFSGVNPCAEEPLPSG----GSCLLGSINLSEFIIQPFGEH 382

Query: 614 NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             FD +KL S +R AV  L++V+D  +N H +++ + S H +R IGLG+MG    L  + 
Sbjct: 383 ATFDINKLKSCVREAVVALNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMG 442

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S E++E+ D   + +   A+  S  +A+E G +S +K     +  F I+++     
Sbjct: 443 IRYGSDESLELCDLIGKTMLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN---- 498

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                          ++ K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y+
Sbjct: 499 ---------------EDTKEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYI 543

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAF 849
           +                 L   D++ +     +K +     + + I D+  L     TA 
Sbjct: 544 RKT-------------ESLHDEDVYYKVYTPIVKEYM----DKKGITDEECLPDFFVTAM 586

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I     I      QK+ID + S  + +  E + + +  IY +AW  GLK     R    
Sbjct: 587 NIGYEERINMQKVWQKYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFRDGCK 646



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGV------DRELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K      
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWK-NKYRH 113

Query: 151 DGTLISFNSKRLEM 164
           +G       KR+  
Sbjct: 114 NGESFDEWIKRISN 127


>gi|24943147|ref|NP_733909.1| ORF55 [Callitrichine herpesvirus 3]
 gi|13676698|gb|AAK38264.1|AF319782_58 ORF55 [callitrichine herpesvirus 3]
          Length = 802

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 179/853 (20%), Positives = 279/853 (32%), Gaps = 150/853 (17%)

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           +G+    L   L   + +    +P    +  R L           +       T  +   
Sbjct: 11  EGVRIEQLINDLKVQANS----DPEANILAGRLL---------HRLKSPLTTKTVSDYLL 57

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFEYLGLQIL--YDRYFL 307
            +       +   ++  L            L++  + E  D       L  L  YD Y  
Sbjct: 58  CFGPLLAENVLLFIQDHLDELE------DRLSSFQRGEVYDRLLGRGYLSALRYYDTYLN 111

Query: 308 HINGSRIEMPQAFFMRVA------------MGLALKETEKEKRAV-----EFYNLLSSFH 350
                  E     +MRVA            M LA+K        +      F+  L+   
Sbjct: 112 VTTDGVYESIPHAYMRVAAFCASITLHFEGMRLAMKAMCPHLSDILSIFDYFFEHLTLQT 171

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG--ALQENAMLAKYSGGLGNDWTPVR 408
             CSTP L ++G R   L+SCF+ +   +         +++   L ++  G+G   T   
Sbjct: 172 VCCSTPILRSAGIRKQILASCFIMSPRMESEAAVNLAMMRDLGRLLQHKSGVGMGVTDFG 231

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G HI             LK+ N      N   KR  +V A++E WH  V +FL+ +  
Sbjct: 232 RDGKHIGL----------LLKMVNSHVEYHNYANKRPVSVAAFMEVWHSQVFKFLEAKVP 281

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              +  R   + T   IP +F K   +     W LF P     L  LYG+EFE  Y    
Sbjct: 282 ENPE--RCAGIFTGLCIPHMFFKLYKEKPWSFWHLFEPQNAGRLESLYGEEFEREYYRLI 339

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           +     E K +  +   +L   ++    + G P+I  K+ CN    +   G   S+    
Sbjct: 340 K-----EGKSYGSVPIKSLMFSIVNSAIKAGSPYILLKEACNEHYWRDLSGEAMSAGNLC 394

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN-------------------------------- 614
              L  S +E AVCNL S+ L                                       
Sbjct: 395 AEVLQPSRDEIAVCNLASVCLPRCLTGPLTTGPVHGLMGPERKSGHELLRGLQETYDPIE 454

Query: 615 -------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   F    L   ++ AV +++  I     T E    ++      G+G+ G     
Sbjct: 455 AVDLPTGDFSLKILRDAVQCAVFLVNCAIQAGSPTWEARDVASM-----GIGVQGLADVF 509

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI 726
             L   Y  P +  +     E + F A+  S  +A+  R  +S F  S +  G F     
Sbjct: 510 SALGWHYTDPSSRALNSRIFEEMYFTALCTSNTIAEHSRRMFSGFSRSKYASGWFHWHDW 569

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                  +           W+ L  R+K  G+ NS  +A+ PTA +A + GVS S  P +
Sbjct: 570 PDTITSLEP--------EVWETLAGRIKEHGLFNSQFIALMPTAGVAQLTGVSDSFYPFF 621

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
            N   K     +    N      L+          ++       +  +         I  
Sbjct: 622 ANASTKVTSKEEALRPNQTFWRHLRV------DHANEAVRVGCKVEAMPEPLRTHYSIFK 675

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKT-TYY 902
           TAF+     LI  +  R  ++DQ+QSL L+L E    +   L  +    W +GLKT  YY
Sbjct: 676 TAFDYPQEDLIRMSRDRAPFVDQSQSLTLFLKERDASRASMLVRLLLLGWELGLKTIMYY 735

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC------------------ 944
            R      VEK    GV     A P  +     H       C                  
Sbjct: 736 CR------VEKEADMGVYECRKADPRAEDEVVEHESDDTEVCKSGVVETKYKYYELFDVD 789

Query: 945 ---TSDTECEVCQ 954
                +  C  CQ
Sbjct: 790 TVEDVEPNCMSCQ 802


>gi|294054517|ref|YP_003548175.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613850|gb|ADE54005.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Coraliomargarita akajimensis DSM 45221]
          Length = 971

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 134/647 (20%), Positives = 231/647 (35%), Gaps = 62/647 (9%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY        M       NS    PQ S+CF+  V D++  I    +  AML K+  G G
Sbjct: 167 FYWDQDHEVVM-----RANSQYEFPQCSACFIQHVDDNMDSIMELARSEAMLFKFGSGSG 221

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460
            D + +R     + G  G+  G + FL V +  A  V  GGK R+ A    L+ WH D+E
Sbjct: 222 TDLSSIRSTREKLSG-GGRPSGPLSFLSVYDAVAGVVKSGGKTRRAAKMNVLKDWHPDIE 280

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF++ +           +              +            +        G +F  
Sbjct: 281 EFIEAKTIEERKAWALIEEGYDPSFNGDAYGSIKYQNENLSVRASDTFMQAATTGSKF-- 338

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
               + ++   GE    +   A  L  ++       G P + F D  +     +  G  +
Sbjct: 339 ----FTKRVTDGEPCEEK--DASYLLDRISEGTHVCGDPGMQFDDTIHKWHTCKGSGRQN 392

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640
            +N C+E        +   CNL S+NL+        D ++ A+  +  +   + V+D + 
Sbjct: 393 CTNPCSEYLF----LDNTACNLASLNLMKFRTAEGLDAERFAAAAKIFIIAQEIVVDRSS 448

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +  E    ++H  R +GLG     + L      YAS E + +A      ++  A   S E
Sbjct: 449 YPTEAITYNSHWFRTLGLGYANLGALLMSYGYAYASDEGLGLAKAITATMTGVAYKTSAE 508

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGL------------------LAEVRDELAMNR-- 740
           LA  +  +  +K +       P ++  +                      R ELA     
Sbjct: 509 LAALKTPFPGYKDARHHGVENPPEADNVASMQAVIELHKSHAESLASQTARGELAEATAQ 568

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
            ++  W E     K  G RN+    +APT TI  +    +  ++P+   + Y      G 
Sbjct: 569 YAQRVWKEAADLGKRYGYRNAQVTVLAPTGTIGFLMDCDTTGVEPAIGLVAYKTLAGGGL 628

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNI--------ERIPDDLKKIHAT 847
            T+    +   ++    +D+A I  +  H    G++ NI          + D+   +  +
Sbjct: 629 MTIPIKSIPLAMETMG-YDQAAIDQVCAHVKEYGTVENISVSGKQIQSGLKDEHIPVFDS 687

Query: 848 AF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
           AF        +     I+  S  Q ++  A S  + +  E + K++   Y  AW  G+K 
Sbjct: 688 AFKSGMGQRYLPYTAHIDMMSAVQPFLSGAISKTVNMPQEATIKEIRETYIHAWKKGIKG 747

Query: 900 TYYLRSRS-ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
               R  S  ++  K+T          V VT             S T
Sbjct: 748 IAIYRDGSKRSAPIKTTKDEPKEAKPEVQVTMEPYRRKLPDTRESLT 794


>gi|254974806|ref|ZP_05271278.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-66c26]
 gi|255092194|ref|ZP_05321672.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CIP 107932]
 gi|255313933|ref|ZP_05355516.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-76w55]
 gi|260682868|ref|YP_003214153.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CD196]
 gi|260686466|ref|YP_003217599.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile R20291]
 gi|306519825|ref|ZP_07406172.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-32g58]
 gi|260209031|emb|CBA62135.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile CD196]
 gi|260212482|emb|CBE03396.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile R20291]
          Length = 729

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 158/780 (20%), Positives = 295/780 (37%), Gaps = 153/780 (19%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I+  DGT   F+  ++E  V +A    +    + +  +  + + +  +  + +   +  
Sbjct: 3   YIIKRDGTKELFSKSKIEDAVYKASINSEGGVDRELAYDISRKIANDYNSME-KCLSVEE 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            + ++E            L+E  R+++                          YI    +
Sbjct: 62  IQDIVEV----------LLMESNRKDIA-----------------------KHYILYRER 88

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +     +FD   L   +                 ++Y    NG   E    +  R++
Sbjct: 89  RSEIRTKAWEFD--ELQKSI---------------WKNKY--RHNG---ESFDEWIKRIS 126

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLT-TVPDDL 380
                  + +  + +          F+ +   L N G +        S+C++     D +
Sbjct: 127 -----NNSSRISKLIR------QKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSI 175

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF   ++ A    Y GG+G D + +R  GA ++     + G + F+++ + T   +  
Sbjct: 176 EDIFDTAKKLARTFSYGGGVGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTG-LIG 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R+GA+   ++  H ++EEF+D++     D  +    N +  + D FM+ V +     
Sbjct: 235 QRGRRGALMISMDVNHPEIEEFIDIKT----DLEKVTKANISIRVTDEFMQAVREK---- 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                                Y         GE K+ + ++A  L+ K +   ++   P 
Sbjct: 287 -------------------KLYNCTFEVETTGE-KIVKIVNAYDLFNKFVKNNWDYAEPG 326

Query: 561 ITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHF-----AN 613
           I F D     +             N C E  L S       C LGSINL          +
Sbjct: 327 ILFWDKIKTYNFMSEDKNFCFSGVNPCAEEPLPSG----GSCLLGSINLSEFIIQPFGEH 382

Query: 614 NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             FD +KL S +R AV  L++V+D  +N H +++ + S H +R IGLG+MG    L  + 
Sbjct: 383 ATFDINKLKSCVREAVVALNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMG 442

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S E++E+ D   + +   A+  S  +A+E G +S +K     +  F I+++     
Sbjct: 443 IRYGSDESLELCDLIGKTMLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN---- 498

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                          ++ K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y+
Sbjct: 499 ---------------EDTKEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYI 543

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAF 849
           +                 L   D++ +     +K +     + + I D+  L     TA 
Sbjct: 544 RKT-------------ESLHDEDVYYKVYTPIVKEYM----DKKGITDEECLPDFFVTAM 586

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I     I      QK+ID + S  + +  E + + +  IY +AW  GLK     R    
Sbjct: 587 NIGYEERINMQKVWQKYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFRDGCK 646



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGV------DRELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K      
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWK-NKYRH 113

Query: 151 DGTLISFNSKRLEM 164
           +G       KR+  
Sbjct: 114 NGESFDEWIKRISN 127


>gi|300726805|ref|ZP_07060235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bryantii B14]
 gi|299775918|gb|EFI72498.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bryantii B14]
          Length = 861

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 139/718 (19%), Positives = 268/718 (37%), Gaps = 103/718 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G   E  P     R+A  +A  E + +    A E ++LL
Sbjct: 20  FDGDQLAARVWVNKYAMKDSFGHIYEKSPLEMHWRIANEVARIEKKYKNPLSAQEIFDLL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFRYIVPAGSPMTGIGNTHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPAGSPVNNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+   ++  +    P                
Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDEFMRCAIEDEPYRQQWP---------------- 238

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                          V ++ISA  LW K++   +++  P I F D     S       + 
Sbjct: 239 --------IHDVNPSVVKQISARKLWDKIVHNAWKSAEPGILFWDTILRESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L SINL ++  N       F+YD     ++ A R++D++
Sbjct: 291 FRTVSTNPCGEIPLCPYDSCRLLSINLYSYVENPFTPQASFNYDLFKKHVQLAQRIMDDI 350

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK K+ +   R  G+G+      +  + 
Sbjct: 351 VDLEMEKIDLIMNKIDKDPQLEEVKGAEYHLWEKIKRKSSLGRRTGVGITAEGDMIAAMG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + +    + ++ +A  +SV LA+ERGA+  +  +                E
Sbjct: 411 LRYGTQEATDFSVSVHKTLALNAYRSSVNLAEERGAFEIYDANR---------------E 455

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   +    +     L   +   G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 456 AKNPFILR--IKEADPALYADMVKYGRRNIACLTIAPTGTTSIMTQTTSGIEPVFMPVYK 513

Query: 792 KSNMSGDF-TVVNSFLVNE----LKQRDLWDEAMISDLKYHDGSIG------NIERIPDD 840
           +          V+   V+E     ++  ++ +  +  +K +   +        I  +   
Sbjct: 514 RRRKVNPTDKDVHVDFVDEVGDSFEEYIVYHKKFVEWMKINGFDVNKRYSQDEINELVAK 573

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                ATA ++D +  ++     QKW+D + S+ + L ++     ++ +Y +AW  G K 
Sbjct: 574 SPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDESLVNRLYVEAWKSGCKG 633

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCTSDT---ECE 951
               R  S + V  S  K    +       DP            P          +C+
Sbjct: 634 CTIYRDGSRSGVMISASKSEKKEAEKQGTADPKEQEKDDVENKQPEVVEVRPKELDCD 691


>gi|194246585|ref|YP_002004224.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           mali]
 gi|193806942|emb|CAP18374.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma
           mali]
          Length = 830

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 145/698 (20%), Positives = 272/698 (38%), Gaps = 63/698 (9%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290
           E L   +K+  K        L  +     +E     +          +  +      E+ 
Sbjct: 162 EALEIYFKEEIKPKLKYFYSLKAK-IDYLLENNYYEKDFFNHYTYEQIKTIYQIAYAEKF 220

Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
               ++G+   Y+ Y L        +E  +    R+ +            A +    L  
Sbjct: 221 QFASFMGIFKFYNDYALKNRNKTKYLETYED---RLVVNALYHAHGNFILAKKLIKSLIQ 277

Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +F  +TPTL NSG ++  +  SCFL    D L  I    + +  L+K  GG+  + + +
Sbjct: 278 QNFTPATPTLLNSGKKYRGEFVSCFLIEGGDSLNDIARIFEFSMQLSKIGGGVSINLSNL 337

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  I       +GV+   K+ +      +Q G+R GA   YL  +H D+++FL+ +K
Sbjct: 338 RAKGETIKKNANVCKGVVGVCKLLDHGFRYADQMGQRNGAGAVYLNVFHADIKDFLNTKK 397

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D+  R   ++    IPD  ++    N    +F P  V      YG+ F     N + 
Sbjct: 398 LNADEDVRVKTLSLGVVIPDKMLELAKNNEMMYIFYPHTV---FLEYGQNFADISINMDY 454

Query: 528 Q---ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                 +      + I+   L   +  +  E+G+P+I + D  N  +       +  SNL
Sbjct: 455 WYDILVKNSKIKKKIINPRNLLDLIAQLQGESGYPYIMYCDNVNKNNMLN--LPIKFSNL 512

Query: 585 CTEITLNSSSEETAVC---------NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           CTEI   + +   A              S NL +    N    + +  T+  A+ V+++V
Sbjct: 513 CTEILQPTITSHYADYDKREEDRIGMDISCNLSSGHMGNMIKNNSIKETVFMAMEVMNSV 572

Query: 636 I-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
             + +   +    K+N  +R++G G+MG    +    I + S E +++ D     +++++
Sbjct: 573 ALNTDIAYVPGVAKANRLNRSVGFGIMGHHEFIAKNFIFFGSEEDLDLIDVFFNAVNYYS 632

Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTSRLPWDEL 749
           +  S++ A+     + +F  S +  G +  +   +L +          +   S   W EL
Sbjct: 633 LLHSMQKAKTTGQKFFNFSKSKYADGSYFNNRGEILPKNIKVKNIFKHIKLPSNKDWTEL 692

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
           K  V   G+ NS+ +A+AP  +I  I   + S+ P  Q +  ++  +         L   
Sbjct: 693 KTNVIKYGLYNSHRLAVAPNGSIGYIMSTTPSLTPIKQLIEERTYGNSKTYFPTPGL--- 749

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
                                        +    ++ TA++I+   LI+  +  QK IDQ
Sbjct: 750 -----------------------------EQFSFMYETAYKINKYRLIDVIATAQKHIDQ 780

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             S  L +  + + ++L   Y  A   G+KT YY R++
Sbjct: 781 GISFELGITSDITTRELQKYYLYAHYQGIKTLYYTRTQ 818


>gi|9631251|ref|NP_048032.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3]
 gi|4019287|gb|AAC95585.1| large subunit of ribonucleotide reductase [Ateline herpesvirus 3]
          Length = 767

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 176/811 (21%), Positives = 300/811 (36%), Gaps = 101/811 (12%)

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
           +  +I S   +++    + +            E+   ++ K    +  E    Y   F  
Sbjct: 3   QEIIISSLIDMLKVSAGWDREA---------NEISGRLFHKLMDVSSTETISQYLLLFGH 53

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGL---QILYDRYFLHIN---G 311
            +E  +   + +  +   ++  +  + +   +F      G+   +  YD Y L       
Sbjct: 54  LLEPHIFEFIQNYEV---EIDEVCLEYRTSNNFMCLRSCGILPAKRFYDTYVLPPKPGSN 110

Query: 312 SRIEMPQAFFMRVAMGLALK----------------------ETEKEKRAVEFYNLLSSF 349
            R E    FF R+A   A                             +    FY ++SS 
Sbjct: 111 GRYESIPHFFARIAAYCAWNCIMCEPLKDTLVHIQKRDWNVELKTNIQIFKYFYKVISSQ 170

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGA-LQENAMLAKYSGGLGNDWTPV 407
              C+TP + ++G     LSSCF+     D       +   E A L     G+G D T  
Sbjct: 171 LVCCATPVMRSAGIAGENLSSCFIVAPTLDTEKSTISSIFGELAPLLASRSGVGIDVTKF 230

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
              G +IH            LK+ N      N    R  +V  Y+E WH  + EFL  + 
Sbjct: 231 SFGGKNIHSC----------LKLINAQVDFFNDKSVRPVSVATYIEMWHCQIHEFLSAKL 280

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYENY 525
               D  R + +     IP LF K    +    W LF P +  +L  LYG EF+  Y   
Sbjct: 281 PENPD--RCNSIFQGVCIPSLFFKMYETDPNAQWYLFDPQDAPNLTKLYGSEFDEEYLRL 338

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNL 584
                    K  + +S  +L   ++  + +TG P++  K+  N     +  G  ++ SNL
Sbjct: 339 V-----STKKYKQSVSLKSLMFSLINTIIKTGSPYVISKEAMNKHHWYETQGEAINCSNL 393

Query: 585 CTEITLNSSSEETAVCNLGSINLLAH----------FANNQFDYDKLASTIRTAVRVLDN 634
           C EI        T+ CNL +I L                 QFD+ KL   ++ AV +++ 
Sbjct: 394 CAEIVQQPKQY-TSTCNLANICLPKCLNGSEFPYTCSNKAQFDFLKLEYAVQAAVFIINA 452

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            I     T   A       R++G+G  G       +   Y   E+  +  +  E + + A
Sbjct: 453 CILAPSPT--SAATVGQRERSMGIGCQGLADVFSEMGYGYLDLESECLDRDIFETMYYTA 510

Query: 695 ISASVELA--QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
           +  S E+    +   ++ F+ S    G+F   +   + +              W  L+  
Sbjct: 511 VKTSSEICSIGKGQPFAGFRKSKLAHGIFHWATWDAMPQKVP--------MKQWIHLQDN 562

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           +K  G+ NS  +A+ PTA  + + G + S  P + N+  K +   +    N   +  +K 
Sbjct: 563 IKKFGVYNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEEIMRPNLTFLKNVKP 622

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
           +DL        ++++ G +  +        K   TAF+  P   +  AS R  ++DQ+QS
Sbjct: 623 QDLCT------VRFYGGDVSMMPEELSARYKHFLTAFDYCPKAQMRRASVRAPYVDQSQS 676

Query: 873 LNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT---SVEKSTLKGVDGKLNA 925
           L L+L E    S K +  +    + +GLKT  YY R +  T    +E         K + 
Sbjct: 677 LTLFLTEDNIQSAKYIKDLLLLGFNLGLKTIMYYCRVKKTTKLLQLECLKPDNTIKKDDG 736

Query: 926 VPVTD-PNSSTHSLGIPSSCTSDT-ECEVCQ 954
           + V++       S      C     EC  CQ
Sbjct: 737 IVVSELVEKLPKSHKTEDVCQLGQSECISCQ 767


>gi|329113328|ref|ZP_08242109.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
 gi|326697153|gb|EGE48813.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
          Length = 352

 Score =  269 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 110/399 (27%), Positives = 172/399 (43%), Gaps = 58/399 (14%)

Query: 567 CNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623
            N   P+ H      V +SNLC+EITL +  +           L +       ++     
Sbjct: 1   MNNARPEHHKLAGLEVKTSNLCSEITLPTGIDHHGKARTAVCCLSSLNLETWDEWKDNPQ 60

Query: 624 TIRTAVRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            I   +  LDNV    ID     + +AK +    R++GLG+MGF + L   ++P+ S  A
Sbjct: 61  FIEDVMLFLDNVLQDFIDRAPEDMHRAKYAAMRERSVGLGVMGFHTFLQSRNVPFESVIA 120

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
                +  + I   A +AS +LA+ RG     +                           
Sbjct: 121 KVWNRKIFKHIREQADAASRKLAELRGPCPDAE--------------------------- 153

Query: 740 RTSRLPWDELKKRVKTIGMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMS 796
                            G+    SN MAIAPTA+I+ I G  S  I+P   N++++  +S
Sbjct: 154 ---------------EYGVMERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLS 198

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G FTV N  L   L+++      + S +    GS+ +++ +    K +  TAFE+D  W+
Sbjct: 199 GSFTVRNRHLQKLLEEKGQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQRWI 258

Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +E A+ RQ +I QAQS+NL+L  +   + L  I+  AW  GLK+ YY RS S    +  T
Sbjct: 259 VEHAADRQPFICQAQSVNLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLSIQRAD--T 316

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           +  V  K + + V    +S+ S           EC  CQ
Sbjct: 317 VSNVLAKNDVMNVDSSQASSGSASSG---NDYEECLACQ 352


>gi|255516612|ref|ZP_05384288.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-97b34]
          Length = 689

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 158/780 (20%), Positives = 295/780 (37%), Gaps = 153/780 (19%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I+  DGT   F+  ++E  V +A    +    + +  +  + + +  +  + +   +  
Sbjct: 3   YIIKRDGTKELFSKSKIEDAVYKASINSEGGVDRELAYDISRKIANDYNSME-KCLSVEE 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            + ++E            L+E  R+++                          YI    +
Sbjct: 62  IQDIVEV----------LLMESNRKDIA-----------------------KHYILYRER 88

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +     +FD   L   +                 ++Y    NG   E    +  R++
Sbjct: 89  RSEIRTKAWEFD--ELQKSI---------------WKNKY--RHNG---ESFDEWIKRIS 126

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLT-TVPDDL 380
                  + +  + +          F+ +   L N G +        S+C++     D +
Sbjct: 127 -----NNSSRISKLIR------QKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSI 175

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF   ++ A    Y GG+G D + +R  GA ++     + G + F+++ + T   +  
Sbjct: 176 EDIFDTAKKLARTFSYGGGVGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTG-LIG 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R+GA+   ++  H ++EEF+D++     D  +    N +  + D FM+ V +     
Sbjct: 235 QRGRRGALMISMDVNHPEIEEFIDIKT----DLEKVTKANISIRVTDEFMQAVREK---- 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                                Y         GE K+ + ++A  L+ K +   ++   P 
Sbjct: 287 -------------------KLYNCTFEVETTGE-KIVKIVNAYDLFNKFVKNNWDYAEPG 326

Query: 561 ITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHF-----AN 613
           I F D     +             N C E  L S       C LGSINL          +
Sbjct: 327 ILFWDKIKTYNFMSEDKNFCFSGVNPCAEEPLPSG----GSCLLGSINLSEFIIQPFGEH 382

Query: 614 NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             FD +KL S +R AV  L++V+D  +N H +++ + S H +R IGLG+MG    L  + 
Sbjct: 383 ATFDINKLKSCVREAVVALNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMG 442

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S E++E+ D   + +   A+  S  +A+E G +S +K     +  F I+++     
Sbjct: 443 IRYGSDESLELCDLIGKTMLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN---- 498

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                          ++ K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y+
Sbjct: 499 ---------------EDTKEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYI 543

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAF 849
           +                 L   D++ +     +K +     + + I D+  L     TA 
Sbjct: 544 RKT-------------ESLHDEDVYYKVYTPIVKEYM----DKKGITDEECLPDFFVTAM 586

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I     I      QK+ID + S  + +  E + + +  IY +AW  GLK     R    
Sbjct: 587 NIGYEERINMQKVWQKYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFRDGCK 646



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGV------DRELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K      
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWK-NKYRH 113

Query: 151 DGTLISFNSKRLEM 164
           +G       KR+  
Sbjct: 114 NGESFDEWIKRISN 127


>gi|255649712|ref|ZP_05396614.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-37x79]
          Length = 659

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 158/780 (20%), Positives = 295/780 (37%), Gaps = 153/780 (19%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I+  DGT   F+  ++E  V +A    +    + +  +  + + +  +  + +   +  
Sbjct: 3   YIIKRDGTKELFSKSKIEDAVYKASINSEGGVDRELAYDISRKIANDYNSME-KCLSVEE 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            + ++E            L+E  R+++                          YI    +
Sbjct: 62  IQDIVEV----------LLMESNRKDIA-----------------------KHYILYRER 88

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +     +FD   L   +                 ++Y    NG   E    +  R++
Sbjct: 89  RSEIRTKAWEFD--ELQKSI---------------WKNKY--RHNG---ESFDEWIKRIS 126

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLT-TVPDDL 380
                  + +  + +          F+ +   L N G +        S+C++     D +
Sbjct: 127 -----NNSSRISKLIR------QKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSI 175

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF   ++ A    Y GG+G D + +R  GA ++     + G + F+++ + T   +  
Sbjct: 176 EDIFDTAKKLARTFSYGGGVGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTG-LIG 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R+GA+   ++  H ++EEF+D++     D  +    N +  + D FM+ V +     
Sbjct: 235 QRGRRGALMISMDVNHPEIEEFIDIKT----DLEKVTKANISIRVTDEFMQAVREK---- 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                                Y         GE K+ + ++A  L+ K +   ++   P 
Sbjct: 287 -------------------KLYNCTFEVETTGE-KIVKIVNAYDLFNKFVKNNWDYAEPG 326

Query: 561 ITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHF-----AN 613
           I F D     +             N C E  L S       C LGSINL          +
Sbjct: 327 ILFWDKIKTYNFMSEDKNFCFSGVNPCAEEPLPSG----GSCLLGSINLSEFIIQPFGEH 382

Query: 614 NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             FD +KL S +R AV  L++V+D  +N H +++ + S H +R IGLG+MG    L  + 
Sbjct: 383 ATFDINKLKSCVREAVVALNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMG 442

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S E++E+ D   + +   A+  S  +A+E G +S +K     +  F I+++     
Sbjct: 443 IRYGSDESLELCDLIGKTMLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN---- 498

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                          ++ K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y+
Sbjct: 499 ---------------EDTKEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYI 543

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAF 849
           +                 L   D++ +     +K +     + + I D+  L     TA 
Sbjct: 544 RKT-------------ESLHDEDVYYKVYTPIVKEYM----DKKGITDEECLPDFFVTAM 586

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I     I      QK+ID + S  + +  E + + +  IY +AW  GLK     R    
Sbjct: 587 NIGYEERINMQKVWQKYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFRDGCK 646



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +++  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGV------DRELAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K      
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWK-NKYRH 113

Query: 151 DGTLISFNSKRLEM 164
           +G       KR+  
Sbjct: 114 NGESFDEWIKRISN 127


>gi|296451257|ref|ZP_06892997.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08]
 gi|296880391|ref|ZP_06904354.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07]
 gi|296259863|gb|EFH06718.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP08]
 gi|296428632|gb|EFH14516.1| ribonucleoside-diphosphate reductase [Clostridium difficile NAP07]
          Length = 729

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 158/780 (20%), Positives = 295/780 (37%), Gaps = 153/780 (19%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I+  DGT   F+  ++E  V +A    +    + +  +  + + +  +  + +   +  
Sbjct: 3   YIIKRDGTKELFSKSKIEDAVYKASINSEGGVDRDLAYDISRKIANDYNSME-KCLSVEE 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            + ++E            L+E  R+++                          YI    +
Sbjct: 62  IQDIVEV----------LLMESNRKDIA-----------------------KHYILYRER 88

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +     +FD   L   +                 ++Y    NG   E    +  R++
Sbjct: 89  RSEIRTKAWEFD--ELQKSI---------------WKNKY--RHNG---ESFDEWIKRIS 126

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLT-TVPDDL 380
                  + +  + +          F+ +   L N G +        S+C++     D +
Sbjct: 127 -----NNSSRISKLIR------QKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSI 175

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF   ++ A    Y GG+G D + +R  GA ++     + G + F+++ + T   +  
Sbjct: 176 EDIFDTAKKLARTFSYGGGVGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTG-LIG 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R+GA+   ++  H ++EEF+D++     D  +    N +  + D FM+ V +     
Sbjct: 235 QRGRRGALMISMDVNHPEIEEFIDIKT----DLEKVTKANISVRVTDEFMQAVREK---- 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                                Y         GE K+ + ++A  L+ K +   ++   P 
Sbjct: 287 -------------------KLYNCTFEVETTGE-KIVKIVNAYDLFNKFVKNNWDYAEPG 326

Query: 561 ITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHF-----AN 613
           I F D     +             N C E  L S       C LGSINL          +
Sbjct: 327 ILFWDKIKTYNLMSEDKNFCFSGVNPCAEEPLPSG----GSCLLGSINLSEFIIQPFGEH 382

Query: 614 NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             FD +KL S +R AV  L++V+D  +N H +++ + S H +R IGLG+MG    L  + 
Sbjct: 383 ATFDINKLKSCVREAVVALNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMG 442

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S E++E+ D   + +   A+  S  +A+E G +S +K     +  F I+++     
Sbjct: 443 IRYGSDESLELCDLIGKTMLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN---- 498

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                          ++ K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y+
Sbjct: 499 ---------------EDTKEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYI 543

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAF 849
           +                 L   D++ +     +K +     + + I D+  L     TA 
Sbjct: 544 RKT-------------ESLHDEDVYYKVYTPIVKEYM----DKKGITDEECLPDFFVTAM 586

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I     I      QK+ID + S  + +  E + + +  IY +AW  GLK     R    
Sbjct: 587 NIGYEERINMQKVWQKYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFRDGCK 646



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +D+  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGV------DRDLAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K      
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWK-NKYRH 113

Query: 151 DGTLISFNSKRLEM 164
           +G       KR+  
Sbjct: 114 NGESFDEWIKRISN 127


>gi|18976812|ref|NP_578169.1| ribonucleotide-diphosphate reductase subunit alpha [Pyrococcus
            furiosus DSM 3638]
 gi|1688292|gb|AAB36947.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638]
 gi|18892410|gb|AAL80564.1| ribonucleotide reductase [Pyrococcus furiosus DSM 3638]
          Length = 1740

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 162/351 (46%), Gaps = 17/351 (4%)

Query: 565  DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYD 619
            +     +   +   + +  +           E   CNL SINL             FD+D
Sbjct: 1274 EIVYDFTVPNYHMYISNGFMSHNCGEEP-LYEYESCNLASINLAKFVKYDENGKPYFDWD 1332

Query: 620  KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
            + A  I+   + LDN ID+N   + +   +    R IG+G+MG   AL  L IPY S E 
Sbjct: 1333 EYAYVIQKVAKYLDNSIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEG 1392

Query: 680  VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +   +  E+++F+A   SVE A++RG +  +  + + +G  P++               
Sbjct: 1393 FKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYDKTEYPEGKLPVE----------GFYHP 1442

Query: 740  RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
                LPWD+L + +K  G+RN+      PT +++ I   S  I+P Y  +Y KS   G+F
Sbjct: 1443 EIWNLPWDKLVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPVYALVYKKSVTVGEF 1502

Query: 800  TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
              V+     ELK+R L+ E ++  +  + GS+  +E IP+D++++  TA +I  +  I +
Sbjct: 1503 YYVDPVFEEELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIA 1562

Query: 860  ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
             +  Q W+  + S  + + +E + + +   Y  A  +G K     R  S +
Sbjct: 1563 QASIQMWLTDSASKTINMINEATVEDVKAAYLIARFLGCKGVTVYRDGSLS 1613



 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 142/377 (37%), Gaps = 85/377 (22%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD S+I  A+ +A   V        IR +  +  + +  V R+      
Sbjct: 5   KVMKRDGRIVPFDESRIRWAVQRAMWEV-------GIRDEKKLDEVVKSIVQRI-NELYD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I HIE+IQD VE  LM++G  ++ + Y+LYR++++++R  +    +            
Sbjct: 57  GKIPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKRILNKKE--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  +                  +    + +SR L
Sbjct: 108 -----------------------LDEIDKRF----------------SINALRVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            + E      + R L E++   +L  +          +    Y +   R           
Sbjct: 129 KKDENGNIVESPRELFERVA--ILAVIPDLLYDERVFDKNGNYSQDLKRV-------EYY 179

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----- 324
            E   +FD  Y               +G   L   +F  +     E+ +   M+V     
Sbjct: 180 LEHFEEFDRKY--------------SIGKYKLNKYHFERMVNLYKELAEQGKMKVSIDEF 225

Query: 325 -AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
            AM    +  E EK   E++ L+++  FM +TP L NSG     LS+CF+  + DD+  I
Sbjct: 226 LAMLEKGEFNEYEKEINEYFRLMTNQIFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285

Query: 384 FGALQENAMLAKYSGGL 400
             A  + AM+ K  GG 
Sbjct: 286 MKAAHDVAMIQKMGGGC 302



 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 32/196 (16%)

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
             +    G +++ +R  G  +  T G + G + F+ + +  +  + QGG R+GA    LE
Sbjct: 750 MIFVHNTGLNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILE 809

Query: 454 TWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
            WH D+E+F+  + KN G +     +++   W  + F + + +   + L +P        
Sbjct: 810 IWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGKKYPLINPRT------ 861

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
                                 +V +++    L+ ++  M +    P + F D  N R+ 
Sbjct: 862 ---------------------GEVVKEVDPKTLFEELAYMAWAKADPGVIFFDVINRRNV 900

Query: 573 QQ--HVGVVHSSNLCT 586
            +    G + ++N C 
Sbjct: 901 LKKAKGGPIRATNPCV 916


>gi|255655272|ref|ZP_05400681.1| putative ribonucleotide-diphosphate reductase [Clostridium
           difficile QCD-23m63]
          Length = 659

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 158/780 (20%), Positives = 295/780 (37%), Gaps = 153/780 (19%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            I+  DGT   F+  ++E  V +A    +    + +  +  + + +  +  + +   +  
Sbjct: 3   YIIKRDGTKELFSKSKIEDAVYKASINSEGGVDRDLAYDISRKIANDYNSME-KCLSVEE 61

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            + ++E            L+E  R+++                          YI    +
Sbjct: 62  IQDIVEV----------LLMESNRKDIA-----------------------KHYILYRER 88

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
              +     +FD   L   +                 ++Y    NG   E    +  R++
Sbjct: 89  RSEIRTKAWEFD--ELQKSI---------------WKNKY--RHNG---ESFDEWIKRIS 126

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP----QLSSCFLT-TVPDDL 380
                  + +  + +          F+ +   L N G +        S+C++     D +
Sbjct: 127 -----NNSSRISKLIR------QKRFLFAGRILANRGLQKEGKKVTYSNCYVIEPPKDSI 175

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             IF   ++ A    Y GG+G D + +R  GA ++     + G + F+++ + T   +  
Sbjct: 176 EDIFDTAKKLARTFSYGGGVGIDISKLRPKGAKVNNAAKHTTGAVSFMELYSMTTG-LIG 234

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
              R+GA+   ++  H ++EEF+D++     D  +    N +  + D FM+ V +     
Sbjct: 235 QRGRRGALMISMDVNHPEIEEFIDIKT----DLEKVTKANISVRVTDEFMQAVREK---- 286

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                                Y         GE K+ + ++A  L+ K +   ++   P 
Sbjct: 287 -------------------KLYNCTFEVETTGE-KIVKIVNAYDLFNKFVKNNWDYAEPG 326

Query: 561 ITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHF-----AN 613
           I F D     +             N C E  L S       C LGSINL          +
Sbjct: 327 ILFWDKIKTYNLMSEDKNFCFSGVNPCAEEPLPSG----GSCLLGSINLSEFIIQPFGEH 382

Query: 614 NQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
             FD +KL S +R AV  L++V+D  +N H +++ + S H +R IGLG+MG    L  + 
Sbjct: 383 ATFDINKLKSCVREAVVALNDVLDEGLNLHPLQEQRDSVHKYRQIGLGVMGIADMLIKMG 442

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S E++E+ D   + +   A+  S  +A+E G +S +K     +  F I+++     
Sbjct: 443 IRYGSDESLELCDLIGKTMLNEAVKQSALIAKEYGTFSEYKYENISKSKFFIENLN---- 498

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                          ++ K+ VK  G+RNS  + I PT +I+ + G+S  I+P +   Y+
Sbjct: 499 ---------------EDTKEMVKKYGLRNSQLLTIPPTGSISTMIGISGGIEPIFNLSYI 543

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD--LKKIHATAF 849
           +                 L   D++ +     +K +     + + I D+  L     TA 
Sbjct: 544 RKT-------------ESLHDEDVYYKVYTPIVKEYM----DKKGITDEECLPDFFVTAM 586

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            I     I      QK+ID + S  + +  E + + +  IY +AW  GLK     R    
Sbjct: 587 NIGYEERINMQKVWQKYIDASISSTINIPFETTVEDVFNIYIKAWEAGLKGVTIFRDGCK 646



 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KA +  EG         +D+  +++ +        N   
Sbjct: 4   IIKRDGTKELFSKSKIEDAVYKASINSEGGV------DRDLAYDISRKIANDY---NSME 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    I + Y+LYRE RS++R              K      
Sbjct: 55  KCLSVEEIQDIVEVLLMESNRKDIAKHYILYRERRSEIRTKAWEFDELQKSIWK-NKYRH 113

Query: 151 DGTLISFNSKRLEM 164
           +G       KR+  
Sbjct: 114 NGESFDEWIKRISN 127


>gi|15451586|gb|AAK98710.1|AC069158_22 Putative ribonucleotide reductase [Oryza sativa Japonica Group]
          Length = 236

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/214 (33%), Positives = 121/214 (56%), Gaps = 1/214 (0%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           ++R  W +L++ +  +G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG+F 
Sbjct: 21  SARWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV 80

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VVN  L+++L +  +W   + + + Y DGS+  I  IPDDLK I+ T +EI    +++ A
Sbjct: 81  VVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKTIVDMA 140

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
             R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLR+R+A    K T+   
Sbjct: 141 IDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTT 200

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             K       + +  +    +  S  +  EC  C
Sbjct: 201 LLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 234


>gi|323342960|ref|ZP_08083191.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463024|gb|EFY08219.1| ribonucleotide-diphosphate reductase subunit alpha [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 704

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 154/723 (21%), Positives = 289/723 (39%), Gaps = 86/723 (11%)

Query: 212 KEPNYAKVTAR-FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270
           K+ N  K   R + L ++ ++     +   +K  +      Y   F              
Sbjct: 28  KDLNKDKEAVRSYFLNEINKKT-QFFHSLKEKLEYLTTNDYYETEF-------------- 72

Query: 271 ESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHI---NGSRIEMPQAFFMRV 324
             +  +    +        D  F    Y+G    Y+ Y L         +E  +    R+
Sbjct: 73  --LEKYTFEQIQAVYDIAYDAKFRFPTYMGAFKFYNDYALKSIDAERVFLERYED---RL 127

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGI 383
           ++          + A +    L +  F  +TPTL N+G +   +  SCFL  V D L  I
Sbjct: 128 SVIALYHADGDFELAKKLITSLIAQDFTPATPTLLNTGKKKRGEFVSCFLLEVDDSLNDI 187

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
               +    L+K  GG+  + T +R  G  I      ++GV+   K+ ++     +Q G+
Sbjct: 188 ARVQEFAMQLSKLGGGVSINLTNLRAKGESIKDIPNVAKGVVGVAKLLDNAFRYADQMGQ 247

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+GA   YL  +H D+E+FL  +K   DD  R   ++    +PD  ++   ++    +F 
Sbjct: 248 RQGAGAVYLNVFHADIEDFLQTKKLNADDDVRVKTLSMGVVMPDKMIELAREDKDMYVFY 307

Query: 504 PDEVSDLHDLYGKEFE----IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           P  V      YG  F        E Y++  +   ++  RKI+   L+  +  +  E+G+P
Sbjct: 308 PHTVYKE---YGIPFSDVAIKMDEWYDKLVENPNVRK-RKINPRKLFDMIAQLQGESGYP 363

Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL---------GSINLLAH 610
           +I + D  N  +P      +  SNLCTEI   S        +           S NL + 
Sbjct: 364 YIMYADNVNKENPL--ADPIKFSNLCTEILQPSIVSHYGDYHRRDEDEIGLDISCNLASG 421

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
              N    + +  T+  A+ ++++V +  N   +    ++N   R++G G+MG    +  
Sbjct: 422 HMGNMIKNNSIKETVFAAMEIMNSVSEKTNIAHVPAVARANRIMRSVGFGVMGHHGYIAE 481

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728
             I Y S E +++ D     I+++++  S+E A+E    +  F+ S +  G +  D   +
Sbjct: 482 NFIAYGSEEDIDLIDVFFSLINYYSLVHSMEKAKETGEKFYGFERSSYADGSYFNDRGQV 541

Query: 729 LAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           L +          +   +   W +LK+ V   G+ NSN +A+AP  +IA +   + S+ P
Sbjct: 542 LPKTEVVKGLLADVEIPTDEDWAQLKEDVMAYGLYNSNRLAVAPNGSIAYVMSATPSLTP 601

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
             Q +  ++  +                         +D+                   +
Sbjct: 602 IKQVVEERTYGNSKTYFPMP----------------AADVAGF----------------M 629

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
           + +A+++D   +I+  +  QK +DQ  S  L +  + + + L   Y  A   G+KT YY 
Sbjct: 630 YESAYQMDKYKIIDVIATAQKHVDQGISFELCITSDETTRSLQRYYLYAHYQGIKTLYYT 689

Query: 904 RSR 906
           R++
Sbjct: 690 RTQ 692


>gi|76799234|ref|ZP_00781408.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
 gi|76585417|gb|EAO62001.1| ribonucleoside-diphosphate reductase 2, alpha subunit
           [Streptococcus agalactiae 18RS21]
          Length = 704

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 155/692 (22%), Positives = 269/692 (38%), Gaps = 79/692 (11%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E LT  +K+  +        +  +     ++                +  L+  L +++
Sbjct: 32  KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89

Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
            F F  ++     Y +Y L  N     +E  +    RV           E+ A +    +
Sbjct: 90  KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEELATDLALEM 146

Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
            S  +  +TP+  N+  +R  +L SCFL  V DD+  I  ++     L++  GG+G   +
Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL+ +H D+  FL  
Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +K   D++ R   ++    +PD F +    N    LFSP  +   + +    +    E Y
Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +       I   + I+A  L  ++  +  E+G+P+I   D  N  +P    G +  SNLC
Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382

Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
           +EI                       CNLGS N+L    +          +I+T  R L 
Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437

Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            V D  N   +   K  N      GLG MG  S L   HI Y SPE++E  D     +++
Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497

Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743
             +  S  +A+ER   +  F+ S +  G +    +          +  +     +     
Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802
             W+ L+  V   G+ + N +A+AP  +I+ I   S SI P  Q +  +     G     
Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
                       L  + +                        + +A+++D   +I+  + 
Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644

Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
             + +DQ  S+ L+L     K+L       W 
Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYE-----WK 671


>gi|17544914|ref|NP_518316.1| hypothetical protein RSc0195 [Ralstonia solanacearum GMI1000]
 gi|17427204|emb|CAD13723.1| probable ribonucleotide reductase, alpha subunit oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 617

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 136/641 (21%), Positives = 234/641 (36%), Gaps = 77/641 (12%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           L DRY           P+  F RVA  LA       +   A  FY  +            
Sbjct: 32  LADRYLAPGET----TPEQVFRRVAHALAAAEAPDRRTHFARLFYVNMLHGAIGAGRIMA 87

Query: 359 FNSGTRHPQLSSCFLTTVPD------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
                R   + +CF+  +            I  AL++  +  +  GG+G D++ V  + A
Sbjct: 88  NAGVDRQATMVNCFVHPIVGPGAQVAGAADIDRALKQAQVTLRMGGGVGYDFSAVAPMDA 147

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
              G +G +  V   ++  + T  A+     R GA  A L   H D+  F+  ++     
Sbjct: 148 LQTGEDGGTGSVCEVIERFDHTCAALALANTRGGAQMAVLRCNHPDLAAFVAAKRG---- 203

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           R+R    N +  + D FM+ V  +A W L    E S      G                 
Sbjct: 204 RKRWTTFNVSVAVTDAFMQAVADDAQWRLQHRAEPSAQRRAAGAHLLDNGHWCYA----- 258

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                  + A  LW  ++     +  P + F D  N  +    +  + ++N C E  L +
Sbjct: 259 ------TVPARQLWDMLVEAAHHSAEPGLLFIDTINAANDLAELETIAATNPCGEQPLPA 312

Query: 593 SSEETAVCNLGSINLLAHFANN-------QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
                  C LG INL     +         FD+      +   VR+LDN IDI    + +
Sbjct: 313 ----WGSCVLGPINLSRWIQHPFGVGGQPMFDFVSFGRAVHIQVRMLDNAIDITRWPLIE 368

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             +  H  R IG+G+ G   AL ++ +PY +PEA  +A +    +  +A +AS  LAQER
Sbjct: 369 HMREAHAKRRIGVGVTGLADALTMMGLPYQAPEARNLAVQIGRCLRDNAYAASAALAQER 428

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             Y  F+       + P   +  L                   +++ +   G+RNS+ ++
Sbjct: 429 SPYPLFRAER---SLAPGHFVATLP----------------GAVRETIARHGLRNSHLLS 469

Query: 766 IAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +APT +++   G   S  I+P++   Y +                   +       +   
Sbjct: 470 LAPTGSVSLAFGGNCSSGIEPAFDWAYQRRV-----------------RIHHGQPQLYRI 512

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882
             +       +      L     TA ++D    ++  +  Q +ID + S  + +    S 
Sbjct: 513 ENHAYRCFQAMHGEHAVLPSYFVTANQVDGDDHLKMVAALQPFIDASISKTILISGGVSP 572

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
            ++  +  +AW + LK     R   A+    S L   DG+ 
Sbjct: 573 AQVGALLFRAWQLRLKGITIFRPDPASDEVLSVLPAADGRP 613


>gi|198434254|ref|XP_002126546.1| PREDICTED: similar to Ribonucleotide reductase M1 [Ciona
           intestinalis]
          Length = 263

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             D   +  T    W++LK+R+   G+RNS  +A  PTA+ A I G ++SI+P   N+Y 
Sbjct: 36  QFDMWNVTPTDLWDWNKLKQRIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYT 95

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           +  +SG+F +VN  L+ +L + +LW+E +   +  ++GSI NI  IPDDLK+++ T +EI
Sbjct: 96  RRVLSGEFQIVNQHLLKDLTEMNLWNEDVKLQMIANNGSIQNIPNIPDDLKQLYRTVWEI 155

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               +++ A+ R  +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A  
Sbjct: 156 SQKNIVKMAADRAAFIDQSQSLNIHIAEPNYAKLTSMHFFGWKSGLKTGMYYLRTKPAAQ 215

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP---SSCTSDTECEVC 953
             + T+     K      T                S  +   C +C
Sbjct: 216 AIQFTVDKNKLKDVKSEQTMTEQEKREENEAAMLCSLQNKEACLMC 261


>gi|154491701|ref|ZP_02031327.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC
           43184]
 gi|154087942|gb|EDN86987.1| hypothetical protein PARMER_01312 [Parabacteroides merdae ATCC
           43184]
          Length = 856

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 141/701 (20%), Positives = 259/701 (36%), Gaps = 110/701 (15%)

Query: 282 ANDLKYERDF-AFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK- 337
               K   D+   + L  ++  ++Y L    G+  E  P     R+A  +A  E +    
Sbjct: 18  DEAFKASLDYFTGDELAAKVWVNKYALKDAFGNIYEESPVDMHHRLASEIARVEKKYPNP 77

Query: 338 -RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQEN 390
               E + L   F ++    +         Q   LS+CF+  +    D    I    +E 
Sbjct: 78  LSEEELFALFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDADSYGAIIRIDEEQ 137

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+  
Sbjct: 138 VQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALML 196

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E F+D +   G    +    N +  I D FM+ V     +    P +    
Sbjct: 197 SVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVINGTPYKQQYPIDS--- 249

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                 E    ++I+A  LW+K++   +++  P + F D     
Sbjct: 250 ---------------------SEPTNVKEINAAELWKKIIHNAWKSAEPGVLFWDTILRE 288

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTI 625
           S       +    + T             C L +INL ++          FD+D     +
Sbjct: 289 SVPDSYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTKEAYFDFDLFRKHV 348

Query: 626 RTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLM 661
             A R++D++ID+                          H  EK +K     R  G+G+ 
Sbjct: 349 ILAQRIMDDIIDLESEKIEKILEKIDADPESLEVKQSERHLWEKIQKKTLQGRRTGVGIT 408

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                +  L + Y + EA E A++  + ++  A  +SVE+A+ERGA+             
Sbjct: 409 AEGDMIAALGLRYGTEEATEFAEKVQKMLALAAYRSSVEMAKERGAF------------- 455

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D      E ++        R    EL   +   G RN  C+ IAPT T + +   +  
Sbjct: 456 --DIYDAKREEKNPFINR--LREADPELYDDMVKYGRRNIACLTIAPTGTTSLMTQTTSG 511

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSF-------LVNE----LKQRDLWDEAMISDLKYHDGS 830
           I+P +  +Y +         VN          V+E     ++  ++    ++ +  +  S
Sbjct: 512 IEPVFLPVYRRRRK------VNPNDAEARVDFVDETGDAFEEYIVFHHKFVTWMLANGFS 565

Query: 831 I------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
                    +E +        AT+ ++D +  +    R QKW+D + S+ + L  + +  
Sbjct: 566 ASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPADVTED 625

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++ +Y +AW  G K     R  S + V  ST      K +
Sbjct: 626 LVNSLYVEAWKCGCKGCTVYRDGSRSGVLLSTDNKKKKKED 666


>gi|260588433|ref|ZP_05854346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
 gi|260541307|gb|EEX21876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
          Length = 763

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/591 (21%), Positives = 233/591 (39%), Gaps = 77/591 (13%)

Query: 367 QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            LS+C++     D++  IF   ++ A    Y GG G D + +   GA +  T  ++ G +
Sbjct: 72  TLSNCYVVEPPEDNIESIFDCAKKLARTYSYGGGCGVDISKLAPKGARVTNTAKETSGSV 131

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F+ + +     +     R+GA+   +   H D+EEF++++     D  +    N +  I
Sbjct: 132 SFMDLYSLVTG-LIGQNGRRGALMISIACDHPDLEEFIEIK----SDLDKVTKANISIRI 186

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            D FM  V     + L    E +                           + ++I A ++
Sbjct: 187 TDKFMLAVKMRKPFVLSFTREETGE------------------------TIRKEIDAYSV 222

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
           + K+  M ++   P + F D     +            +N C E  L +       C LG
Sbjct: 223 FHKLCEMNWDYAEPGMLFWDRIENWNLLSADKEFSYAGTNPCAEEPLPAG----GSCLLG 278

Query: 604 SINLLAH-FANNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIGLGL 660
           SINL      N  F++     T+  AVR L+ V+D  +  H +++ ++S    R IGLG+
Sbjct: 279 SINLSEFVTENKTFNFTDFKKTVDIAVRALNIVLDEGLPLHPLKEQRESVRDWRQIGLGI 338

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            G    L  + I Y SPE++++ D     +++ AI  S  +A E G+Y  +K     Q  
Sbjct: 339 FGLADLLIKIGIKYGSPESIDLCDMIGHAMAYQAIMTSNSIAIEVGSYPKYKPDAVKQSP 398

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           F  + I  L                    ++ +  IG+ NS  + IAPT +++++ GVS 
Sbjct: 399 FFTEHIDEL-------------------YRENISEIGLCNSQLLTIAPTGSLSSMLGVSG 439

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P Y N Y +   S         L    +   ++   +   +  +   + +   +PD 
Sbjct: 440 GIEPVYANYYTRKTES---------LHGHDEYYKVYTPIVKKYIDEYG--LKDDSELPD- 487

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                 TA  ++    I+  S  Q+ ID + S  + + +  + K  + +Y  AW  GLK 
Sbjct: 488 ---FFVTAQTLNYKERIDMQSIWQRHIDASISSTVNVPNNFTVKDTEDLYLYAWEKGLKG 544

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
               R     +   +T      K         ++   +L       +D  C
Sbjct: 545 VTIFRDGCKRTGILTTDNK---KKETKENNSDSNVPITLQRGMIIKADDNC 592


>gi|254436965|ref|ZP_05050459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 307]
 gi|198252411|gb|EDY76725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 307]
          Length = 492

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/565 (21%), Positives = 218/565 (38%), Gaps = 87/565 (15%)

Query: 360 NSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
               R+  LS+ F+  T+PD + GI   L++ A+  +  GG+G D++ +R  G  +HG +
Sbjct: 4   CGTARNVTLSNTFVMRTIPDSVDGIMDTLKDGALTMQMGGGVGFDFSTLRPSGTVVHGLD 63

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            ++ G +  + + + T   +  G   +GA+ A +   H D+E F+        DR R  +
Sbjct: 64  CRAAGPLAAMDIFDVTCKMIVSG-MGRGAMMATMRCDHPDIEAFI----VAKSDRSRLRN 118

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM  +  +  W L                               E  + R
Sbjct: 119 FNLSVMVTDAFMAAIAADTTWDLVW-----------------------------EGAIMR 149

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           ++ A  LW  ++   +    P + F D  N  +P +++  + ++N C E  L  +     
Sbjct: 150 RLRARDLWNAIMKQTYAAAEPGVLFIDKINAANPLRYLENIAATNSCAEQPLPPN----G 205

Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            C L SINL    +         D  +L   +R AVR+LDN +D++   +E  K+     
Sbjct: 206 TCPLASINLAQLVSAPFTPDARLDVVQLRQLVRVAVRMLDNSLDVSRFALEAQKQQAKDQ 265

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IG+G+ G  +A+ +L   Y S +AV +    M+ I   A  AS  LA+ERG +  +  
Sbjct: 266 RRIGIGVTGVANAIAMLGARYGSSKAVFLLGSWMQTIQNAAYGASALLAKERGVFPRYDA 325

Query: 714 SLW--DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                 +G+  +D                       +++  V+  G+RN     IAPT T
Sbjct: 326 DKHLTSRGIQALD----------------------PDVRTLVEQHGLRNGTLTTIAPTGT 363

Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
            +   G  S  I+P +   ++++                 K         +  + Y    
Sbjct: 364 KSMFAGNVSSGIEPMFSTSFLRTIT---------------KPNGDKSSERV--IDYAVWR 406

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889
              I      L     T  ++ P   +   +  Q+W+D   S  +    +        IY
Sbjct: 407 FAQIFGPDAPLPDSFVTVADLSPDDHVAMQAAAQEWVDSGISKTVNCPEDIPFDTFKDIY 466

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914
           R A+    K     R  + T    S
Sbjct: 467 RAAYDADCKGCTTYRPNTITGSVLS 491


>gi|299141379|ref|ZP_07034516.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris C735]
 gi|298577339|gb|EFI49208.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris C735]
          Length = 861

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 137/726 (18%), Positives = 265/726 (36%), Gaps = 119/726 (16%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLL 346
           F  + L  ++  ++Y +  + G   E  P+    R+A  +A  E + +    A E + +L
Sbjct: 20  FDGDELAARVWVNKYAMKDSFGHIFECSPEDMHRRIANEVARIEAKYKNPMNAQEIFEML 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFKYIVPAGSPMTGIGNSHQVASLSNCFVIGLEGKADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     +  +    N +  + D FM+    +  +    P +              
Sbjct: 199 AFIDAKM----EEGKVTGANVSVKLDDEFMQAAVDDRNYMQQWPIDAK------------ 242

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       E K+ ++ISA  LW K++   +++  P + F D     S       + 
Sbjct: 243 ------------EPKMTKEISARKLWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
            + + T             C L SINL ++          F++DK    ++ A R++D++
Sbjct: 291 FTTVSTNPCGEIPLCPYDSCRLLSINLYSYVEKPFTTEASFNFDKFKKHVQIAQRIMDDI 350

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK K+ +   R  G+G+      L  L 
Sbjct: 351 VDLEMEKIDLIIHKIKEDPENDEVKEVEYHLWEKIKRKSGMGRRTGVGITAEGDMLAALG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + +    + ++ +A  +SV +A+ERGA+  +                    
Sbjct: 411 LRYGTQEATDFSVSVHKTLALNAYRSSVTMARERGAFEIYDA----------------KR 454

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +   + R  +    EL   ++  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 455 EVNNPFVQRI-KEADPELFADMQQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 513

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   +  ++      E   +          
Sbjct: 514 RRRKVNPNDADVHVDFVDEVGDSFEEYIVYHRKFLQWMQVNGYDTEKRYTQ--------E 565

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
            I+ +        ATA ++D +  ++     QKW+D + S+ + L  +     ++ +Y +
Sbjct: 566 EIDHLVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPHDVDESLVNRLYVE 625

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK---LNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R  S   V  S  K    K        V +     H    P       
Sbjct: 626 AWKSGCKGCTIYRDGSRAGVMISVSKKDKKKGSHTEGADVREDTPKQHECVRPEVTEVRP 685

Query: 949 ---ECE 951
              EC+
Sbjct: 686 KELECD 691


>gi|281423575|ref|ZP_06254488.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris F0302]
 gi|281402395|gb|EFB33226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella oris F0302]
          Length = 861

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 137/726 (18%), Positives = 265/726 (36%), Gaps = 119/726 (16%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLL 346
           F  + L  ++  ++Y +  + G   E  P+    R+A  +A  E + +    A E + +L
Sbjct: 20  FDGDELAARVWVNKYAMKDSFGHIFECSPEDMHRRIANEVARIEAKYKNPMNAQEIFEML 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFKYIVPAGSPMTGIGNSHQVASLSNCFVIGLEGKADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     +  +    N +  + D FM+    +  +    P +              
Sbjct: 199 AFIDAKM----EEGKVTGANVSVKLDDEFMQAAVDDRNYMQQWPIDAK------------ 242

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       E K+ ++ISA  LW K++   +++  P + F D     S       + 
Sbjct: 243 ------------EPKITKEISARKLWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
            + + T             C L SINL ++          F++DK    ++ A R++D++
Sbjct: 291 FTTVSTNPCGEIPLCPYDSCRLLSINLYSYVEKPFTTEASFNFDKFKKHVQIAQRIMDDI 350

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK K+ +   R  G+G+      L  L 
Sbjct: 351 VDLEMEKIDLIIHKIKEDPENDEVKEAEYHLWEKIKRKSGMGRRTGVGITAEGDMLAALG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + +    + ++ +A  +SV +A+ERGA+  +                    
Sbjct: 411 LRYGTQEATDFSVSVHKTLALNAYRSSVTMARERGAFEIYDA----------------KR 454

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +   + R  +    EL   ++  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 455 EVNNPFVQRI-KEADPELFADMQQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 513

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   +  ++      E   +          
Sbjct: 514 RRRKVNPNDADVHVDFVDEVGDSFEEYIVYHRKFLQWMQVNGYDTEKRYTQ--------E 565

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
            I+ +        ATA ++D +  ++     QKW+D + S+ + L  +     ++ +Y +
Sbjct: 566 EIDHLVAKSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPHDVDESLVNRLYVE 625

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK---LNAVPVTDPNSSTHSLGIPSSCTSDT 948
           AW  G K     R  S   V  S  K    K        V +     H    P       
Sbjct: 626 AWKSGCKGCTIYRDGSRAGVMISVSKKDKKKGSHTEGTDVREDTPKQHECVRPEVTEVRP 685

Query: 949 ---ECE 951
              EC+
Sbjct: 686 KELECD 691


>gi|326333060|ref|ZP_08199311.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Nocardioidaceae bacterium Broad-1]
 gi|325949134|gb|EGD41223.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Nocardioidaceae bacterium Broad-1]
          Length = 571

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 160/650 (24%), Positives = 251/650 (38%), Gaps = 123/650 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFYNLL 346
               G  +   +Y +     R       +  +A              +       F+  +
Sbjct: 26  MTTAGYAMFKAKYTVADQSVR-----ERYETIAATAGGLADEMYPREDGVSWTEPFFEAI 80

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
            +     STP L N GT      SC  + V D ++G +  L+E A+L++   G       
Sbjct: 81  WNGWLSPSTPVLSNLGTDRGLPVSCEGSYVEDSVWGFYETLKEAAILSQNGFGTSAYLGD 140

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           VR  GA     NGK+ GV+P      +    ++QG  R+G+   YL   H D  E  DL 
Sbjct: 141 VRPRGAK-FSDNGKANGVVPVFCNFVEMTNQISQGATRRGSWAGYLPVDHPDFYELADLI 199

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                  R   + N        F+ R+                                 
Sbjct: 200 F------REPANKNVGWIFSQAFIDRMLAGDK---------------------------- 225

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV---HSSN 583
                          A+  ++++L +    G  +I   D  N    + +        +SN
Sbjct: 226 --------------DALERYQRVLKIRVVLGKGYIWKVDTVNAAQTESYQANGLANKASN 271

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN---- 639
           LC+EITL S  + +  C L S+NL  +      D  K   T   A   LD V +      
Sbjct: 272 LCSEITLFSDEDHSYTCVLSSLNLSTY------DEWKDQDTAYVATVFLDAVAEAFLRKA 325

Query: 640 --CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                +E+A +     R++GLG+MG+   L    +P+ S +A  +  +  E IS  A +A
Sbjct: 326 RTIRGLERAVRYTEKARSLGLGVMGYHDYLQKQRVPFESDKAAALNKDIFERISSRADAA 385

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                           S W   V  I    +                            G
Sbjct: 386 ----------------SRWMGSVAGIPEWCV----------------------------G 401

Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
            RNS+ MAIAPT + A I G  SQ I+P   N++ ++  +G+    N  LV  +K+R ++
Sbjct: 402 RRNSHLMAIAPTMSTAVIVGGTSQGIEPYVANVWNQTTSAGEMPRANQNLVEVMKERGVY 461

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
           D+A ISD+  H GS+ ++  + D  K++  T +EID   L+  AS RQ +IDQAQSLNL+
Sbjct: 462 DQAHISDIIDHGGSVQHVSWLDDHEKEVFRTGYEIDQEILLARASDRQVYIDQAQSLNLF 521

Query: 877 L-DEPSGKKLDFIYRQA-WLMGLKTTYYLRSRSATSVEK-STLKGVDGKL 923
              + + + +  I++ A     +K+ YYLRSR+     K ST      K 
Sbjct: 522 FQADATPQYISKIHKLALLDPNIKSLYYLRSRAGIQASKQSTSTTPTAKA 571


>gi|319899891|ref|YP_004159619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides helcogenes P 36-108]
 gi|319414922|gb|ADV42033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides helcogenes P 36-108]
          Length = 845

 Score =  265 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 141/714 (19%), Positives = 273/714 (38%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + E +N
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEIARIEAKYPNALSSEELFN 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL+ F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+   +   +T   P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDSFMQAAIEGKPYTQQYPIDA----------- 240

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                         E    ++I A ALW+K++   +++  P + F D     S       
Sbjct: 241 -------------AEPIFKKEIDASALWKKIVHNAWKSAEPGVLFWDTILRESVPDCYED 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++      ++  FD+D     +  A R++D
Sbjct: 288 LGYRTISTNPCGEIPLCPYDSCRLLAINLYSYVINPFKSDAYFDFDLFKKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKAKKS------------------------NHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+  K                         +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMKKIDSDPEDEEVKRTELSLWQKIYKKSRQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++ +A  +S+E+A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFSEKVHKTVALNAYRSSIEMAKERGAFEIYN----------------T 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              +D   +NR  R    EL + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKDNPFINR-LREADPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++ +        +        
Sbjct: 511 YKRRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKFVTWMEAQGYNPAKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++   + ++ +Y
Sbjct: 564 -EEIDTMVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  ST       L          +   +     
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISTKSDKKEGLPPCKPPTVVETRPKILDADV 676


>gi|62327200|ref|YP_223938.1| ribonucleotide reductase [Phage phiJL001]
 gi|50059518|gb|AAT69490.1| ribonucleotide reductase [Phage phiJL001]
          Length = 602

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 134/668 (20%), Positives = 239/668 (35%), Gaps = 111/668 (16%)

Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340
           L       R        L I  + +     G   E  +    RVA  L   E        
Sbjct: 12  LVAFDHLSRKNKMHGPTLAISEEIHAEKYRGE-GESFREGMGRVANALKDGEE----HYK 66

Query: 341 EFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVP-----DDLYGIFGALQENAMLA 394
           E   +L    FM +         T++    +C+++        D    I    ++ A   
Sbjct: 67  ELREILLDMRFMPAGRVQAAMGSTKNVTAYNCYVSGTIEDSFIDGHGSIMERAKQAAATM 126

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           +  GG+G D++ +R  GA I     +S G + F+++ +     V   G R+GA    L  
Sbjct: 127 RMGGGIGYDFSTLRPNGALIKKLQSRSSGPLSFMQIYDSVCKCVASSGHRRGAQMGVLRV 186

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+EEF+  +    +D     + + A  I D FM+ V     + L    E        
Sbjct: 187 DHPDIEEFIRAK--HNEDNLTGFNTSIA--ITDRFMECVISGEPFPLTFGGET------- 235

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                                 +R I+A  LW  ++   ++   P   F D  N  +  +
Sbjct: 236 ----------------------YRSINAENLWEMIMRSTWDWAEPGTLFIDQINRMNNLK 273

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------------NQFDYDKL 621
           +   + ++N C E  L         C LGS NL+ +                  FD+D  
Sbjct: 274 YCETIAATNPCGEQPLPPY----GACLLGSFNLVKYVKPFTGRVFVVGADSRWTFDWDLF 329

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           A+ +   VR +DNV+D   + + + +K   + R +GLG+    +A   L +PY S E ++
Sbjct: 330 ATDVYAVVRAMDNVVDRAIYPLFEQEKEAKSKRRMGLGVTALANAAEALGMPYGSIEFLK 389

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
              + +E ++ ++  ASVELAQE+GA+  +                        L     
Sbjct: 390 FEGQVLETLACNSYQASVELAQEKGAFPLYDER--------------------YLDSEYV 429

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  +EL++ +   G+RNS+  +IAPT TI+     VS  I+P +   Y ++       
Sbjct: 430 RQVLPEELQEDIGRYGIRNSHLTSIAPTGTISLTADNVSSGIEPVFSYGYDRTV------ 483

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
                         + D      +  +   +  +E           T+ ++     ++  
Sbjct: 484 -------------HMPDGVRTERVDDYGVRVFGVEG---------KTSDQVTAEEHVDVL 521

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           +  Q ++D A S    +  +   +    IY +AW  G K      S         +    
Sbjct: 522 TVAQGFVDSAVSKTCNVAPDMPWEDFKQIYFRAWEGGAKGCTTFNSGGKRFGVLRSDDDD 581

Query: 920 DGKLNAVP 927
              +    
Sbjct: 582 QSNIEGEA 589


>gi|218264324|ref|ZP_03478181.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222092|gb|EEC94742.1| hypothetical protein PRABACTJOHN_03872 [Parabacteroides johnsonii
           DSM 18315]
          Length = 856

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 141/701 (20%), Positives = 259/701 (36%), Gaps = 110/701 (15%)

Query: 282 ANDLKYERDF-AFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK- 337
               K   D+   + L  ++  ++Y L    G+  E  P     R+A  +A  E +    
Sbjct: 18  DEAFKASLDYFTGDELAAKVWVNKYALKDAFGNIYEESPVDMHHRLASEIARVEKKYPNP 77

Query: 338 -RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQEN 390
               E +NL   F ++    +         Q   LS+CF+  +    D    I    +E 
Sbjct: 78  LSEEELFNLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVIGLDGDADSYGAIIRIDEEQ 137

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+  
Sbjct: 138 VQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALML 196

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E F+D +   G    +    N +  I D FM+ V     +    P +    
Sbjct: 197 SVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMQAVVNGTPYKQQYPIDS--- 249

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                 E    ++I+A  LW+K++   +++  P + F D     
Sbjct: 250 ---------------------SEPTNVKEINAAELWKKIIHNAWKSAEPGVLFWDTILKE 288

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTI 625
           S       +    + T             C L +INL ++          FD+D     +
Sbjct: 289 SVPDSYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTKEAYFDFDLFRKHV 348

Query: 626 RTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLM 661
             A R++D++ID+                          H  EK +K     R  G+G+ 
Sbjct: 349 ILAQRIMDDIIDLESEKIEKILEKIDTDPESLEVKQSERHLWEKIQKKTLQGRRTGVGIT 408

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                +  L + Y + EA   A++  + ++  A  +SVE+A+ERGA+             
Sbjct: 409 AEGDMIAALGLRYGTEEATVFAEKVQKMLALAAYRSSVEMAKERGAF------------- 455

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
             D      E ++        R    EL   +   G RN  C+ IAPT T + +   +  
Sbjct: 456 --DIYDAKREEKNPFINR--LREADPELYDDMVKYGRRNIACLTIAPTGTTSLMTQTTSG 511

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSF-------LVNE----LKQRDLWDEAMISDLKYHDGS 830
           I+P +  +Y +         VN          V+E     ++  ++    ++ +  +  S
Sbjct: 512 IEPVFLPVYRRRRK------VNPNDAEARVDFVDETGDAFEEYIVFHHKFVTWMLANGFS 565

Query: 831 I------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
                    +E +        AT+ ++D +  +    R QKW+D + S+ + L  + +  
Sbjct: 566 ASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPADVTED 625

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            ++ +Y +AW  G K     R  S + V  ST      K +
Sbjct: 626 LVNSLYVEAWRCGCKGCTVYRDGSRSGVLLSTDNKKKKKED 666


>gi|282880763|ref|ZP_06289459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305297|gb|EFA97361.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella timonensis CRIS 5C-B1]
          Length = 861

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 143/718 (19%), Positives = 274/718 (38%), Gaps = 103/718 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F+ + L  ++  ++Y +  + G   E  P+    R+A  +   E + E    A E + LL
Sbjct: 20  FSGDELAARVWVNKYAMKDSFGHIYEKSPKDMHWRIANEIVRIENKYENPLSAQEVFELL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFKYIIPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +  +    P +              
Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDEFMQAAIDDKPYVQQFPVDS------------- 241

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       E  + ++I+A +LW K++   +++  P + F D     S       + 
Sbjct: 242 -----------DEPSMKKEIAAKSLWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNV 635
              + T             C L SINL ++  N       FD +K A  ++ A R++D++
Sbjct: 291 FRTVSTNPCGEIPLCPYDSCRLLSINLYSYVVNPFTSDAYFDMEKFAKHVQIAQRLMDDI 350

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK K+ +   R  G+G+      L  + 
Sbjct: 351 VDLELEKIDCILEKIKLDPQSEEVKETERHLWEKIKRKSGQGRRTGVGITAEGDMLAAMG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +    + ++ +A  +SV +AQERGA+  F         F +        
Sbjct: 411 LRYGTKEATEFSVNIHKTLALNAYRSSVTMAQERGAFEVFDAKREANNPFLLRI------ 464

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                      +    +L + ++  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 465 -----------KEADPQLYEDLQKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 513

Query: 792 KSNMSG-DFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIPDD 840
           +        T V+   V+E     ++  ++ +  +  +K +        +   I+++ + 
Sbjct: 514 RRRKVNPSDTDVHVDFVDEVGDSFEEYIVYHKKFLEWMKVNGIDTTKRYTQEEIDQLVEQ 573

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
                ATA ++D +  ++     QKW+D + S+ + L  +     ++ +Y +AW  G K 
Sbjct: 574 SPYYKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPHDVDEALVNRLYVEAWKSGCKG 633

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCTSDT---ECE 951
               R  S   V  S  K    +  A    D +           P          EC+
Sbjct: 634 CTIYRDGSRAGVMISVSKKDTKEEPAEQAKDNDMEERVKMPCQHPEVTEVRPKELECD 691


>gi|317475578|ref|ZP_07934840.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908282|gb|EFV29974.1| ribonucleoside-diphosphate reductase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 845

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 138/714 (19%), Positives = 267/714 (37%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + E + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALSSEELFG 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           L + F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + +D         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKPYVQQYPIDATDPV------- 244

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I+A  LW+K++   +++  P + F D     S       
Sbjct: 245 -----------------FKKEINATDLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD+D     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMAKIDADPESEDVKHTESVLWQKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E A++  + ++  A  +SV +A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKERGAFEVYD----------------S 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R    EL + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 511 YKRRRKVNPNDSNVHIDFVDETGDAFEEYIVFHPKFVTWMEAEGYDPAKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++   + ++ +Y
Sbjct: 564 -EEIDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  ST      +L          +   +     
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISTKSDKKNELPPCKPPTVVETRPKVLEADV 676


>gi|313667234|ref|YP_004049635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
 gi|313153865|gb|ADR37715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanithermus profundus DSM 14977]
          Length = 927

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 129/617 (20%), Positives = 227/617 (36%), Gaps = 107/617 (17%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
              VPDD+ GI  A  E    A     +  D++ +R  GA +  + G + G + FL    
Sbjct: 202 AIEVPDDMGGIIDAATEAVRRALAGEQVYVDFSALRPEGAPVKRSGGTASGPVSFLSEIF 261

Query: 433 DTAVAVN-------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           D  +                            QGG R+GA  A L   H DV +FL  + 
Sbjct: 262 DHFLYWARLGGVESGPVATLRYVYAPILRVVRQGGTRRGAGMATLSWQHPDVLDFLTAKD 321

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
                                 + R         F+   ++D     G   +  Y +   
Sbjct: 322 ----------------------LDREEAEGDIATFNISVLADNELFDGPAVDSGYLHPVP 359

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNL 584
                   +        +  ++    + TG P + F D  N +SP         + ++N 
Sbjct: 360 GKYDSLPTLSDVRP--WILEQIAEHAWATGEPGLIFIDRINEKSPLKVLDERWRITATNP 417

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           C EI L     +   C+LG++ L ++  +  FD       +R AVR LDNV+D+  + ++
Sbjct: 418 CGEIPL----AKGEACDLGAMILPSYVKDGAFDEAAFRRDVRLAVRFLDNVLDVTRYAVK 473

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             +++    R +GLG+MG    L L+   Y  PEA E+ +  +  +   A++ S  LA+E
Sbjct: 474 DNEETQALTRRLGLGVMGLADMLILMGYRYDDPEAREVVEHVVGILRDEALAESERLAEE 533

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           RG +      L+ Q     +++G+                              RN   +
Sbjct: 534 RGVFP-----LYAQHQKEFEALGIRP---------------------------RRNLALL 561

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK----------QRD 814
            +APT T++ + GVS  I+P +     +        +V+      L+             
Sbjct: 562 TVAPTGTVSMVAGVSSGIEPIFAAFVWRRIGEQYVPLVHPLFARLLEGFEPPEGYRTPEG 621

Query: 815 LWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID----- 868
            W+ E++++ L+ H GS   ++ +P  ++ +  TA ++ P   +   +  Q+  D     
Sbjct: 622 RWNMESVLAALQEHHGSPQQLDFLPQAIRDVFVTAHDVAPEDHVAMQAAVQRAFDASEQL 681

Query: 869 --QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
              A S    L +E + + +  +YR AW +G K     R  S      +T K  D     
Sbjct: 682 VGNAISKTTNLPNEATVEDVLTVYRTAWKLGAKGITVYRDGSRDLQVLATSKQDDDAPKE 741

Query: 926 VPVTDPNSSTHSLGIPS 942
             +     +      PS
Sbjct: 742 PELPAEEPTVPVYERPS 758



 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 57/195 (29%), Gaps = 36/195 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHF 351
           F+     I+  +Y            +    RVA  +A  E  E+E     FY L++   F
Sbjct: 5   FDEHAQAIVRRQYAQPGED----SVEDVLRRVAREIARPEGPEREVWEERFYELMAEKRF 60

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA----MLAKYSGGLGNDWTPV 407
           +     L  +GT H  L +C +    +   G    + E A    ++ K  GG G +   +
Sbjct: 61  LPGGRILAGAGTGHGNLLNCHVQGALEHPEGSLEGVMEIARKLALVTKVGGGNGVNLDAL 120

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                 +                                   A++   H DV  F+    
Sbjct: 121 PPARRGV---------------------------QVIFPDPVAFMRADHPDVRSFIRGDY 153

Query: 468 NTGDDRRRTHDMNTA 482
              D  R    +   
Sbjct: 154 PPTDPARPDRGVFAG 168


>gi|303235869|ref|ZP_07322472.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella disiens FB035-09AN]
 gi|302483742|gb|EFL46734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella disiens FB035-09AN]
          Length = 865

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 139/723 (19%), Positives = 264/723 (36%), Gaps = 121/723 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  + G   E  P+    R+A  +A  E + +    A E ++
Sbjct: 18  RYFNGDELAARVWVNKYAMKDSFGKIYEKSPEDMHWRIANEVARIEKKYKNPISAQEVFD 77

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +       + Q   LS+CF+  +    D    I    +E   L K  G
Sbjct: 78  LLDHFRYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGDADSYGAILRIDEEQVQLMKRRG 137

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 138 GVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 196

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +     +  +    N +  I D FM+    +  +    P + +          
Sbjct: 197 SEAFIDAKM----EEGKVTGANVSVKITDSFMEAAVNDKEFVQQFPIDSAHP-------- 244

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++ISA  LW K++   +++  P I F D     S       
Sbjct: 245 ----------------TFKKEISAKKLWDKIVHNAWKSAEPGILFWDTITRESLPDCYAD 288

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLD 633
           +    + T             C L SINL ++  +       FD+D     ++ A R++D
Sbjct: 289 LGFRTISTNPCGEIPLCPYDSCRLLSINLYSYVKHPFTKEATFDFDLFKKHVQLAQRIMD 348

Query: 634 NVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           +++D+                          H  EK K  +   R  G+G+      +  
Sbjct: 349 DIVDLEMEKIDLIMEKVKDDPQNDEVKLAEYHLWEKIKDKSGKGRRTGVGITAEGDMIAA 408

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           + + Y + EA   + E  + ++  A  +SV +AQERGA+S F                  
Sbjct: 409 MGLRYGTEEATAFSVEVHKTLALCAYRSSVTMAQERGAFSIFDAKR-------------- 454

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            E  +   +    +     L   +   G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 455 -EAENPFLLR--IKEAEPALYDDMIKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPV 511

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   +  +K   L  E   +        
Sbjct: 512 YTRRRKVNPNDTGVHIDFVDEVGDSFEEYIVYHKKFIEWMKVNGLDTEKKYTQ------- 564

Query: 831 IGNIERIPDDLKK--IHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK--L 885
               E I + +K+   +  TA ++D +  ++     QKW+D + S+ + L   +  +  +
Sbjct: 565 ----EEINELVKRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPN-NVDEVLV 619

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           + +Y +AW  G K     R  S + V  S  K    +      T     T +        
Sbjct: 620 NKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKKEALENEQTTEKDLTSAEETHEHIC 679

Query: 946 SDT 948
              
Sbjct: 680 MPP 682


>gi|282877838|ref|ZP_06286650.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella buccalis ATCC 35310]
 gi|281300049|gb|EFA92406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella buccalis ATCC 35310]
          Length = 861

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 146/714 (20%), Positives = 279/714 (39%), Gaps = 100/714 (14%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSF 349
           + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A E ++LL  F
Sbjct: 23  DELAARVWVNKYSMKDSFGNIYEKSPEDMHCRIANEIARIEKKYKNPMSAREIFDLLDHF 82

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +       + Q   LS+CF+  +    D    I    +E   L K  GG+G+D
Sbjct: 83  KYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGVGHD 142

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 143 LSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSEAFI 201

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +   G    +    N +  I D FM+  T +  +    P +                 
Sbjct: 202 DAKMTEG----KVTGANVSVKIDDAFMEAATSDKPYVQQFPVDG---------------- 241

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                    E  V R+ISA ALW K++   +++  P + F D     S       +    
Sbjct: 242 --------DEPLVKREISAKALWEKIVHNAWKSAEPGVLFWDTITRESIPDCYADLGFRT 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + T             C L SINL ++       +  FD DK    ++ A R++D+++D+
Sbjct: 294 VSTNPCGEIPLCPYDSCRLLSINLYSYVVHPFTKDAYFDMDKFRKHVQIAQRIMDDIVDL 353

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                     H  EK K  +   R  G+G+      +  + + Y
Sbjct: 354 ELEKIDRIMQKIQQDPQSDEVKGSEYHLWEKIKHKSSQGRRTGVGITAEGDMIAAMGLRY 413

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            +PEA E +    + ++  A  +SV +AQERGA++ F  S                E  +
Sbjct: 414 GTPEATEFSVNVHKNLALSAYRSSVTMAQERGAFAVFDASR---------------EKNN 458

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +    +    +L   ++  G RN  C+ IAPT T + +   +  I+P +  +Y +  
Sbjct: 459 PFLLR--IKEADQQLYADLQKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRR 516

Query: 795 MSG-DFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIPDDLKK 843
               + T V+   V+E     ++  ++ +  +  +  +        +   I+++      
Sbjct: 517 KVNPNDTDVHVDFVDEVGDSFEEYIVYHKKFLEWMNVNGIDSTKKYTQEEIDKLVAQSPY 576

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
             ATA ++D +  ++     QKW+D + S+ + L ++     ++ +Y +AW  G K    
Sbjct: 577 YKATANDVDWLEKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAWKSGCKGCTI 636

Query: 903 LRSRSATSVEKS---TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            R  S   V  S   + K   GK  A   +   ++      P       +   C
Sbjct: 637 YRDGSRAGVMISVSKSEKKQKGKEQAKDNSAGQNALPPCKQPEVIEVRPKVLEC 690


>gi|83642897|ref|YP_438185.1| ORF61 [Ovine herpesvirus 2]
 gi|61971011|gb|AAX58096.1| ORF61 [Ovine herpesvirus 2]
          Length = 785

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 150/721 (20%), Positives = 271/721 (37%), Gaps = 101/721 (14%)

Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAM--------------GLALKETEKEKRAVE-- 341
           +  YD Y L   + +  E     FMRVA                +      +  R +E  
Sbjct: 101 KRFYDTYVLKTADDAWYESVTHCFMRVAAFCTVRALANKPLKTTIIYTNYLRLGRGMECF 160

Query: 342 --------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
                   F++ L+     C+TP + ++GTRH  L+SCFL +             E    
Sbjct: 161 PTVDIFMYFFSPLAQQLVCCATPIMRSAGTRHANLASCFLMSP--------DLSSEANTT 212

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
                 L +  +   G+G  +       + V   L + +      N    R  +V AY+E
Sbjct: 213 TALLQELTSLLSVKSGVGCDVTSFGHGGKSVQSCLSLIDAQVEYFNDQNPRPVSVAAYME 272

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--TQNAGWTLFSPDEVSDLH 511
            WH  ++EFL ++    ++  R   +     IP LF  +     N  W LFSP++  +L 
Sbjct: 273 VWHSQIQEFLSVK--LPENPNRCASIYQGLCIPSLFFDKCLTDSNQPWYLFSPEDAGNLP 330

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            LYG+EF+  YE   R     E +   ++   +L   ++  + +TG P+I +KD CN   
Sbjct: 331 HLYGEEFKEEYERLVR-----ERRYVGQVIIKSLLFSIINTIIKTGSPYIIYKDACNAHH 385

Query: 572 PQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD----------- 619
            ++  G  + S+NLC E+       + + CNL ++ L     +   D             
Sbjct: 386 WKEMRGQAIASANLCAEVIQYPGR-DVSTCNLANVCLPMCLISTPVDPRAPSGQNYSGEV 444

Query: 620 --------------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                          L   +  AV +++  ID      E  ++     R++G+G+ G   
Sbjct: 445 VKSEAVSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRG-QRERSMGIGVHGLAD 503

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPI 723
               +   Y  P A  +  +  E + + A+  S  + +  G   +  ++ S   +GVF  
Sbjct: 504 VFAEMGYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYEESKLSRGVFHW 563

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +    +     E   +  +R             G+ NS  +A+ PT   + + G ++S  
Sbjct: 564 EGWDGVKLSIPEHEWSSLARSCVHS--------GVYNSQFVALMPTVGSSLLTGYAESYY 615

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P + N+  K +   +    N      + + DL        ++ + G +  +     +   
Sbjct: 616 PFFANVSSKVSSKEEIMKPNVTFWKRVSEEDLHT------VRVYGGDVALLPSPLREKYS 669

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT- 899
           +  +AF+      +  A  R  ++DQ+QS + YL E    S K L  +    +  GLKT 
Sbjct: 670 LFLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLILAGYAHGLKTI 729

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS----SCTSD--TECEVC 953
            YY + +      +ST+               ++ T    +P     +C  +    C  C
Sbjct: 730 MYYCKVKK-----QSTMSSFQCLREQEGDKANDTVTGEEPLPDIKYGACNLEGTEACLHC 784

Query: 954 Q 954
           Q
Sbjct: 785 Q 785


>gi|78127896|gb|ABB22280.1| ribonucleotide-reductase large subunit-like protein [Ovine
           herpesvirus 2]
          Length = 785

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 160/792 (20%), Positives = 291/792 (36%), Gaps = 115/792 (14%)

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298
              +  H EM+    +   +Y+   +   +L + +  F L      L             
Sbjct: 33  TAGRLHHEEMEKKATQTVAQYV--AIFGDVLADDVRAF-LQENEGWLDRCMKMYQGMPSY 89

Query: 299 QI-----------LYDRYFLHI-NGSRIEMPQAFFMRVAM--------------GLALKE 332
           ++            YD Y L   + +  E     FMRVA                +    
Sbjct: 90  KLVKSRGILSAKRFYDTYVLKTADDAWYESVTHCFMRVAAFCTVRALANKPLKTTIIYTN 149

Query: 333 TEKEKRAVE----------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
             +  R +E          F++ L+     C+TP + ++GTRH  L+SCFL +       
Sbjct: 150 YLRLGRGMECFPTVDIFMYFFSPLAQQLVCCATPIMRSAGTRHANLASCFLMSP------ 203

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
                 E    A     L +  +   G+G  +       + V   L + +      N   
Sbjct: 204 --DLSSEANTTAALLQELTSLLSVKSGVGCDVTSFGHGGKSVQSCLSLIDAQVEYFNDQN 261

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV--TQNAGWT 500
            R  +V AY+E WH  ++EFL ++    ++  R   +     IP LF  +     N  W 
Sbjct: 262 PRPVSVAAYMEVWHSQIQEFLSVK--LPENPNRCASIYQGLCIPSLFFDKCLTDSNQPWY 319

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           LFSP++  +L  LYG+EF+  YE   R     E +   ++   +L   ++  + +TG P+
Sbjct: 320 LFSPEDAGNLPHLYGEEFKEEYERLVR-----ERRYVGQVIIKSLLFSIINTIIKTGSPY 374

Query: 561 ITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619
           I +KD CN R  ++  G  + S+NLC E+       + + CNL ++ L     +   D  
Sbjct: 375 IIYKDACNARHWKEMRGQAIASANLCAEVIQYPGR-DVSTCNLANVCLPMCLISTPVDPR 433

Query: 620 -------------------------KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
                                     L   +  AV +++  ID      E  ++     R
Sbjct: 434 APSGQNYSGEVVKSEAVSNMYFSLPMLHMAVEVAVFLVNCAIDGGSCVTEGMQRG-QRER 492

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFK 712
           ++G+G+ G       +   Y  P A  +  +  E + + A+  S  + +  G   +  ++
Sbjct: 493 SMGIGVHGLADVFAEMGYSYLDPAAERLDVQIFEHMYYCAVKTSNNICKYGGGLPFEGYE 552

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S   +GVF  +    +     E   +  +R             G+ NS  +A+ PT   
Sbjct: 553 ESKLSRGVFHWEGWDGVKLSIPEHEWSSLARSCVHS--------GVYNSQFVALMPTVGS 604

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + + G ++S  P + N+  K +   +    N      + + DL        ++ + G + 
Sbjct: 605 SLLTGYAESYYPFFANVSSKVSSKEEIMKPNVTFWKRVSEEDLHT------VRVYGGDVA 658

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIY 889
            +     +   +  +AF+      +  A  R  ++DQ+QS + YL E    S K L  + 
Sbjct: 659 LLPSPLREKYSLFLSAFDYSAEGQLMRARLRAPFVDQSQSHSYYLKEENVVSAKYLRDLI 718

Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS----SC 944
              +  GLKT  YY + +      +ST+               ++ T    +P     +C
Sbjct: 719 LAGYAHGLKTIMYYCKVKK-----QSTMSSFQCLREQEGDKANDTVTGEEPLPDIKYGAC 773

Query: 945 TSD--TECEVCQ 954
             +    C  CQ
Sbjct: 774 NLEGTEACLHCQ 785


>gi|326802953|ref|YP_004320771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650728|gb|AEA00911.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 860

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 147/679 (21%), Positives = 247/679 (36%), Gaps = 112/679 (16%)

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTT-VPDDLYGIFGAL 387
             E  +++    FY   S  +F+ +   L+ +G+       +C++   VPD   GI    
Sbjct: 144 KNEDRRQEIEAAFYQEESKGNFVPAGRVLYGAGSGTDVTYFNCYVMPYVPDSRGGIADHR 203

Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447
           +E   +    GG+G + + +R   + + G NGKS G + +L         V QGG R+GA
Sbjct: 204 KEVMEIMSRGGGVGTNGSTLRPRHSLVRGVNGKSSGAVSWLDDIAKLTHLVEQGGSRRGA 263

Query: 448 VCAYLETWHIDVEEFL-------------------DLRKNTGDDRRRTHDMNTANW---- 484
               L  WH D+ EF+                      K   D++ +      A      
Sbjct: 264 QMIMLADWHPDILEFIISKMQNPRILQFIKESSKDSYIKQLVDEKLKFVYSTPAQIDMFQ 323

Query: 485 ------------IPDLFMKRVTQNAGWTLFSPDEVSDL----------------HDLYGK 516
                       + D       +N            D                     GK
Sbjct: 324 AVVDLKEKQGGDVSDAAYAEAKENLELGGHYEVNEPDFLTGANISVAISSDFMEAVKEGK 383

Query: 517 EFE------IAYENYERQADRG----------------EIKVFRKISAVALWRKMLTMLF 554
           ++         Y+  E  A                   EI  +R + A  LW+ +     
Sbjct: 384 DWSLRFPAVEKYDQEEMAAYDSQWQEIGDVREWEAMGHEITTYRTLPAQELWQLINICAT 443

Query: 555 ETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--F 611
               P I F D  N  +    +   V ++N C E  L       +VCNLG+INL      
Sbjct: 444 YAAEPGIFFIDRANEDTNAVAYGQKVVATNPCGEQPLAPY----SVCNLGAINLAQMADK 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            N + D  KL  T+ TA+R+ DNVID   + +E  KK     R IGLG+MG    L    
Sbjct: 500 ENKRLDKKKLQKTVATAIRMQDNVIDATPYFLEANKKQALGERRIGLGVMGLADLLIYCE 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y S E  ++ DE  E I+  A   S+ELA+ERG++    G          ++      
Sbjct: 560 KRYGSKEGNQLVDEVFETIAVTAYQTSIELAKERGSFPFLIG----------ETDEETQA 609

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
           +R+    +   +   + +++ V   G+RNS+ + +APT +   +  VS  ++P +   Y 
Sbjct: 610 LRERFVQSGFMQRMPESIRQDVLKYGIRNSHLLTVAPTGSTGTMMNVSTGLEPYFAFKYY 669

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
           ++   G F  VN+ +V E                       + E   D+L     +A ++
Sbjct: 670 RTGRLGKFIEVNADIVQEYLD-------------------QHPEADVDNLPDFFVSAMDL 710

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            P   ++  +  Q+W+D + S  +      +  ++  +Y + +  G K        S  S
Sbjct: 711 SPREHVDVQTTIQRWVDSSISKTVNAPKGYAVNQVAEVYEKLYEGGAKGGTVYVDGSRDS 770

Query: 911 VEKSTLKGVDGKLNAVPVT 929
              +  K      +     
Sbjct: 771 QVLTLNKDEHEDSDQDSQA 789


>gi|315606269|ref|ZP_07881285.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574]
 gi|315251960|gb|EFU31933.1| ribonucleoside-diphosphate reductase [Prevotella buccae ATCC 33574]
          Length = 855

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 138/719 (19%), Positives = 262/719 (36%), Gaps = 116/719 (16%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
           + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +        E + LL  F
Sbjct: 23  DELAARVWVNKYAMKDSFGNIFEKSPEDMHRRIAGEIARIERKYANPLSEEEIFGLLDHF 82

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+G+D
Sbjct: 83  RYIVPAGSPMTGIGNSHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGVGHD 142

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 143 LSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSEAFI 201

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +   G    +    N +  + D FM+    N  +    P                   
Sbjct: 202 DAKMTEG----KVTGANVSVKLDDEFMQAAIDNRPYVQQFPVTGDAP------------- 244

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV ++ISA ALW K++   +++  P + F D     S       +    
Sbjct: 245 -----------KVKKEISAKALWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFRT 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDI 638
           + T             C L SINL ++  +       F+ DK     + A R++D+++D+
Sbjct: 294 VSTNPCGEIPLCPYDSCRLISINLYSYVEHPFTPDAHFNMDKFKQHAQLAQRLMDDIVDL 353

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                     H  EK K  +   R  G+G+      L  + + Y
Sbjct: 354 EMEKIELIMEKIKADPQSEEVKGAEYHLWEKIKHKSSLGRRTGVGITAEGDMLAAMGLRY 413

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + EA + + E  + ++ +A ++SV++A+ERGA+  F                   E  +
Sbjct: 414 GTQEATDFSVEVHKALALNAYASSVQMAKERGAFEIFDAKR---------------EEHN 458

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +    +    +L   +   G RN  C+ IAPT T + +   +  I+P +  +Y +  
Sbjct: 459 PFILR--LKDADPQLYDDMVKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRR 516

Query: 795 MS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
                                 ++ V +   +  ++   L  E   +           I+
Sbjct: 517 KVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTWMQANGLDTEKRYTQ--------EEID 568

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            +        ATA ++D +  ++     QKW+D + S+ + L ++     ++ +Y +AW 
Sbjct: 569 ALVSRSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAWK 628

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            G K     R  S + V  S  K    K        P +       P       +   C
Sbjct: 629 SGCKGCTIYRDGSRSGVMISVSKKDKKK---ETSVAPVAEAVPCKHPQVTEVRPQTLEC 684


>gi|260909524|ref|ZP_05916227.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636372|gb|EEX54359.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 854

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 147/734 (20%), Positives = 264/734 (35%), Gaps = 120/734 (16%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TE 334
              A  L Y   FA + L  ++  ++Y +  + G+  E  P+    R+A  +A  E    
Sbjct: 11  EAFAAALDY---FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYP 67

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQ 388
               A E Y LL  F ++    +         Q   LS+CF+  +    D    I    +
Sbjct: 68  NPLSAKEVYELLDHFRYIVPAGSPMTGIGNSHQVASLSNCFVVGLDGDADSYGAIMRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  I D FM+    +  +    P    
Sbjct: 187 MLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDNFMQAAVDDKPYVQQFP---- 238

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                +    +V ++ISA ALW K++   +++  P + F D   
Sbjct: 239 --------------------INSDNPEVEKEISAKALWDKIVHNAWQSAEPGVLFWDTIL 278

Query: 569 I----RSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLAS 623
                           S+N C EI L           NL S  +        FD+DK A 
Sbjct: 279 RESIPDCYADLGFTTVSTNPCGEIPLCPYDSCRLLCVNLFSYVVNPFTKEAYFDFDKFAK 338

Query: 624 TIRTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLG 659
            +  A RV+D+++D+                          H  EK K+ +   R  G+G
Sbjct: 339 HVAIAQRVMDDIVDLELEKIDLIMEKIKDDPQSSEVKGAEYHLWEKIKRKSSMGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      +  L + Y + EA +++    + ++  A  +SV +A+ERGA+  F        
Sbjct: 399 ITAEGDMIAALGLRYGTQEATDLSVSVHKCLAIAAYRSSVVMAKERGAFEVFDAKREAAN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F +                   +     L   +   G RN  C+ IAPT T + +   +
Sbjct: 459 PFILR-----------------LKEADPSLYNDMVAYGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAM 820
             I+P +  +Y +                        ++ V +   ++ +K      E  
Sbjct: 502 SGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHKKFMDWMKANGFDTEKR 561

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
            +           I+ I +      ATA ++D +  ++     QKW+D + S+ + L ++
Sbjct: 562 YTQ--------EEIDAIVEQSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPND 613

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
                ++ +Y +AW  G K     R  S + V  S    V  K       +         
Sbjct: 614 VDEALVNRLYVEAWRSGCKGCTIYRDGSRSGVMIS----VSKKDKKKEEKEEEQPVVPCK 669

Query: 940 IPSSCTSDTECEVC 953
            P       +   C
Sbjct: 670 QPEVTEVRPKELAC 683


>gi|329957666|ref|ZP_08298141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides clarus YIT 12056]
 gi|328522543|gb|EGF49652.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides clarus YIT 12056]
          Length = 845

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 140/714 (19%), Positives = 268/714 (37%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTSEELFD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL+ F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGTPFVQQYPIDA----------- 240

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                         E    ++ISA  LW+K++   +++  P + F D     S       
Sbjct: 241 -------------TEPVFKKEISAADLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD+D     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E A++  + ++  A  +SVE+A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFAEKVHKTVALSAYRSSVEMAKERGAFEVYD----------------S 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R    EL + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 511 YKRRRKVNPNDANVHIDFVDETGDAFEEYIVFHPKFVTWMEAEGYDPAKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++   + ++ +Y
Sbjct: 564 -DEIDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  S       +L          +   +     
Sbjct: 623 IEAWKSGCKGCTVYRDGSRSGVLISAKSEKKEELPPCKPPTVVETRPKVLEADV 676


>gi|167764850|ref|ZP_02436971.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC
           43183]
 gi|167697519|gb|EDS14098.1| hypothetical protein BACSTE_03242 [Bacteroides stercoris ATCC
           43183]
          Length = 845

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 143/715 (20%), Positives = 269/715 (37%), Gaps = 115/715 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + E + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTSEELFG 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKPFVQQYPIDA----------- 240

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                         E    ++ISA  LW+K++   +++  P + F D     S       
Sbjct: 241 -------------DEPLFKKEISATDLWKKIVHNAWKSAEPGVLFWDTILRESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD+D     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMAKIDSDPENEDVKHTESVLWQKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E A++  + ++  A  +SVE+A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFAEKVHQTVALSAYRSSVEMAKERGAFEVYD----------------S 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R    EL + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++ +  +D A        D  
Sbjct: 511 YKRRRKVNPNDANVHVDFVDETGDAFEEYIVFHPKFVTWMQAQG-YDPAKHYTQDEVDAL 569

Query: 831 IGNIERIPDDLKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           +             +  T+ ++D +  ++   R QKW+D + S+ + L ++   + ++ +
Sbjct: 570 VQKSP--------YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEELVNRL 621

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           Y +AW  G K     R  S + V  ST K    +L          +   +     
Sbjct: 622 YVEAWKSGCKGCTVYRDGSRSGVLISTKKDKKEELPPCKPPTVVETRPKVLEADV 676


>gi|323344465|ref|ZP_08084690.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269]
 gi|323094592|gb|EFZ37168.1| ribonucleoside-diphosphate reductase [Prevotella oralis ATCC 33269]
          Length = 862

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 140/715 (19%), Positives = 263/715 (36%), Gaps = 101/715 (14%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
           + L  ++  ++Y +  + G+  E  P+  + R+A  +A  E +     +A E + LL  F
Sbjct: 23  DELAARVWVNKYAMKDSFGNIFEKSPEDMYWRIANEIARIEKKYANPLKAKEIFELLDHF 82

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+G+D
Sbjct: 83  RYIVPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGVGHD 142

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 143 LSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSELFI 201

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +   G    +    N +  I D FM     +  +T   P +  +              
Sbjct: 202 DAKMTEG----KVTGANVSVKIDDEFMNAAISDKPYTQQFPIDSKNPQ------------ 245

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHVGVV 579
                           ISA  LW K++   +++  P + F D                  
Sbjct: 246 ------------CTNSISAKKLWEKIVHNAWKSAEPGVLFWDTIIRESIPDCYADLGFHT 293

Query: 580 HSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
            S+N C EI L           NL S  +     +  FD+D     ++ A R++D+++D+
Sbjct: 294 VSTNPCGEIPLCPYDSCRLLCINLYSYVVNPFTKDAYFDFDTFKKHVQIAQRIMDDIVDL 353

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                     H  EK K  +   R  G+G+      L  + + Y
Sbjct: 354 ELEKIDKIMEKITIDPQSDEVKGAEYHLWEKIKYKSGLGRRTGVGITAEGDMLAAMGLRY 413

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + EA + +      ++  A  +SV +A+ERGA+                      E R+
Sbjct: 414 GTQEATDFSVSVHRALALGAYRSSVTMAKERGAFEV---------------YDAKREERN 458

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              +    +    EL + +   G RN  C+ IAPT T + +   +  I+P +  +Y +  
Sbjct: 459 PFILR--LKEADPELYRDMVQYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRR 516

Query: 795 MSG-DFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIPDDLKK 843
               + T V+   V+E     ++  ++ +  +  ++ +        +   I+ +      
Sbjct: 517 KVNPNDTDVHVDFVDEVGDSFEEYIVYHKKFLEWMRINGIDSTKKYTQEEIDELVAKSPY 576

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
             ATA ++D +  +      QKW+D + S+ + L +E     ++ +Y +AW  G K    
Sbjct: 577 YKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNEVDEALVNRLYVEAWRSGCKGCTI 636

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVC 953
            R  S   V  S  K    K         N+           P       +   C
Sbjct: 637 YRDGSRAGVMISVSKKDKKKNEDGEAVKDNNMEQLGMPPCQHPQVTEVRPKELAC 691


>gi|302347121|ref|YP_003815419.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica ATCC 25845]
 gi|302150496|gb|ADK96757.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica ATCC 25845]
          Length = 866

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 140/724 (19%), Positives = 278/724 (38%), Gaps = 101/724 (13%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +  +    FD  + A+   +  D        ++  ++Y +  + G+  E  P+    R+A
Sbjct: 1   METKQTYSFDEAFQASLAYFGGDEL----AARVWVNKYAMKDSFGNIYEKSPEQMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E + +    A E ++LL  F ++    +       + Q   LS+CF+  +    
Sbjct: 57  NEIARIENKYKNPLTAQEVFDLLHHFKYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D T +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTR- 175

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
                 R+GA+   +   H D E F+D +     +  +    N +  I D FM+ V ++ 
Sbjct: 176 EVAQDGRRGALMLSVSIKHPDSEAFIDAKM----EEGKVTGANVSVKITDEFMQAVVEDK 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P                            E  V ++ISA  LW K++   +++ 
Sbjct: 232 TYVQQFPTNS------------------------SEPSVTKEISAKELWEKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P + F D     S       +    + T             C L S+NL ++  +   D
Sbjct: 268 EPGVLFWDTIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFTD 327

Query: 618 Y-----DKLASTIRTAVRVLDNVIDIN------------------------CHTIEKAKK 648
           +     +      + A R++D++ID+                          H  EK KK
Sbjct: 328 HARFDMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKK 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      +  + + Y + EA + + +    ++ +A  +SV +AQERGA+
Sbjct: 388 KSCQGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
                                 E ++   +    +    +L + +K  G RN  C+ IAP
Sbjct: 448 EI---------------YDAKREEKNPFILR--LKEADGQLYEDMKKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNE----LKQRDLWDEAMISD 823
           T T + +   +  I+P +  +Y +      + T V+   V+E     ++  ++    ++ 
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTW 550

Query: 824 LKYHDGSIGN---IERIPDDLKK--IHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           ++ +          E I + +K+   +  TA ++D +  +      QKW+D + S+ + L
Sbjct: 551 MEVNGIDTQKKYSQEEIDELVKRSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNL 610

Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
                 + ++ +Y +AW  G K     R  S + V  S  K    K       +     +
Sbjct: 611 PNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKDLN 670

Query: 937 SLGI 940
           S   
Sbjct: 671 SAEE 674


>gi|94984359|ref|YP_603723.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus geothermalis DSM 11300]
 gi|94554640|gb|ABF44554.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Deinococcus geothermalis DSM 11300]
          Length = 1010

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 141/637 (22%), Positives = 238/637 (37%), Gaps = 106/637 (16%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF-LKVA 431
           +  VPDD+ GI  A +  A  AK       D + +R  GA I G+ G S G + F +++ 
Sbjct: 212 VQAVPDDMGGIIDAARAVAESAKVGVEPRIDLSQMRPEGAPIKGSGGTSSGPVSFLMEIF 271

Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           ++     N                        QGG R+GA  A +   H DV +FL  + 
Sbjct: 272 DNFLEWANRGGETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATIAIEHPDVLDFLTAKD 331

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---------E 517
              +         N +  + + F + +  +A W +    EV   + L  +          
Sbjct: 332 LDREAAEGDISTFNISILVSEQFWQALEGDALWHV-DVQEVPGKYYLAPQSGPYDGHLPT 390

Query: 518 FEIAYENYERQADRGEIKVFRK---------ISAVALWRKMLTMLFETGHPWITFKDPCN 568
                E+  R           +         + A  LW ++    + TG P + F D  N
Sbjct: 391 LPERAEDGARGVPLYRGAPRGRSQPADARPGVPAKWLWDQIAEHAWATGEPGLIFVDRVN 450

Query: 569 IRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             S  +++G    + S+N C EI L         C+LG+INL A+  N++FD+    + +
Sbjct: 451 EHSALKNLGKRYEIRSTNPCGEIPLTVG----EPCDLGAINLAAYVQNSRFDFAAFRADV 506

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           RT VR LD+V+D+N   +E  + ++   R +GLG+MG   AL  L + Y S        E
Sbjct: 507 RTCVRFLDDVLDVNVFALEDNRVASQDLRRLGLGVMGLADALIKLGLRYDSEAGRAAIAE 566

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M  +   A++ S  L QERG Y  ++ +       P                       
Sbjct: 567 IMTALREEAVAESERLGQERGVYPVYERNAQKIPHSP----------------------- 603

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
                        RN   + +APT T + + GVS  I+P +     +   +    +++  
Sbjct: 604 ------------RRNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGAEYRALLHPL 651

Query: 806 LVNELKQ----------RDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
            +  L Q          +  W+ + +   +  + GS+  +  IP+ L+++   A +I P+
Sbjct: 652 FMELLNQYPPAANMDDGQGGWNWDRVTEAVSENHGSVVGLAFIPEALQQVFVCAHDIKPL 711

Query: 855 WLIESASRRQKWID-------QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +      Q+  D        + S  + L    +   +   Y +A+  G K     R  
Sbjct: 712 DHVRMQGVVQQAFDAGGQHAANSLSKTINLPNSATVADVRAAYAEAYRTGCKGITVYRDG 771

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           S      ST K  + K  A PV              S
Sbjct: 772 SRQFQVLSTSKKKEKKAEAEPVQAATEVLGEGAPAVS 808



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 36/179 (20%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--MGLALKETEKEKRAVEFYNLLSSF 349
            F+     I   +Y    +G  +      F R+A  +  A     +E+ A ++Y+L++  
Sbjct: 11  NFDENAQHIARRQYLQPGDGDIL----GMFRRIADWVAAAEAPEARERWAQKYYDLMAQK 66

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDD----LYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+    +       GI    ++ A++ K  GG G +  
Sbjct: 67  RFCPGGRVLAGAGTQHGNVLNCFVQGATEHAPESFDGIMEVAKKLALVTKVGGGNGVNLD 126

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
                        G    V                          Y+   H DV +F++
Sbjct: 127 VYTPRAQGSRPDAGVRGWV--------------------------YMSAAHPDVGDFIE 159


>gi|255691403|ref|ZP_05415078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides finegoldii DSM 17565]
 gi|260623049|gb|EEX45920.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides finegoldii DSM 17565]
          Length = 847

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 146/714 (20%), Positives = 265/714 (37%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E++      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIESKYPNALTAKELYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +         Q   LS+CF+  V    D    I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + SD         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDGKPYLQQYPIDSSDP-------- 243

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I A  LW+K++   +++  P + F D     S       
Sbjct: 244 ----------------TFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD+D     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPNAYFDFDLFKKHVALAQRIMD 347

Query: 634 NVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMHKIDEDPENDEVKRAERVLWEKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +              I  L
Sbjct: 408 LGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYDNKR----EQNNPFIQRL 463

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           AE                EL + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 464 AEA-------------DPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++                  S
Sbjct: 511 YKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPSKRY--------S 562

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+++        AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y
Sbjct: 563 QEEIDKLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  ST    + K    P   P        I  +
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISTKSDKNKKEELPPCKPPTVVEVRPRILEA 676


>gi|330995971|ref|ZP_08319865.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paraprevotella xylaniphila YIT 11841]
 gi|329573968|gb|EGG55546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paraprevotella xylaniphila YIT 11841]
          Length = 845

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 145/722 (20%), Positives = 264/722 (36%), Gaps = 125/722 (17%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G   E  P+    R+A  +A  E + E   +A E + LL
Sbjct: 19  FNGDELAARVWVNKYSMKDSYGHIYEVSPEDMHWRIANEIARIENKYENPLKAEEIFGLL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGQADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM    +   +T   P + S            
Sbjct: 198 SFIDAKMTEG----KVTGANVSVKIDDEFMHAAIEGKSYTQQYPIDSSSPM--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                          V + I+A  LW+K++   +++  P + F D     S       + 
Sbjct: 245 ---------------VAKDINAQDLWKKIVHNAWKSAEPGVLFWDTILRESVPDCYADLG 289

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL A+  N       FD+D     ++ A R++D++
Sbjct: 290 FRTVSTNPCGEIPLCPYDSCRLLAINLYAYVVNPFTPEAYFDFDLFKKHVQLAQRLMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  L 
Sbjct: 350 IDLELEKIEMILQKVDADPESEEVKGTERHLWEKIYKKSGQGRRTGVGITAEGDMLAALG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + A E  + ++  A  +SV++A+ERGA+  F                    
Sbjct: 410 LRYGTQEATDFAVEVHKTVALQAYRSSVQMAKERGAFKIFDA----------------ER 453

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   +NR  R    EL + +   G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 454 EKNNPFINR-LREADPELYENMVKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   +  +K      E   +          
Sbjct: 513 RRRKVNPNDPEVHIDFIDETGDAFEEYIVYHHKFLTWMKINGYDTEKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+ +        ATA ++D +  ++     QKW+D + S+ + L +    + ++ +Y +
Sbjct: 565 EIDELVARSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNNVDEELVNQLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           AW  G K     R  S + V  S               +          P       +  
Sbjct: 625 AWRSGCKGCTIYRDGSRSGVMISVKN------------EKKQPELPCKSPEVTEKRPQVL 672

Query: 952 VC 953
            C
Sbjct: 673 EC 674


>gi|237738296|ref|ZP_04568777.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420176|gb|EEO35223.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 756

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 151/663 (22%), Positives = 266/663 (40%), Gaps = 99/663 (14%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
             LGL I   +Y    +G   E     ++ RV+ G             E   ++ +  F+
Sbjct: 11  NKLGLDIWEKKY--KYDGETFE----AWLNRVSGG-----------DKELKEMIINKEFI 53

Query: 353 CSTPTLFNSGT----RHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
            +   L N G     R    S+C++ T P D+L  IF   ++ A    Y GG G D + +
Sbjct: 54  FAGRILSNRGLAKLGRKITYSNCYVVTPPEDNLESIFDTAKKLARTYSYGGGCGVDISKL 113

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  GA ++ +   + G I F+ + N T   +     R+GA+   ++  H DVEEF+ ++ 
Sbjct: 114 RPKGAEVNNSAKYTTGSISFMNLYNMTTD-IIGQKGRRGALMISIDVNHPDVEEFIKVK- 171

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
               D  +    N +  + + FMK V ++                         YE   +
Sbjct: 172 ---SDLNKVQKANISVRVDENFMKAVIEDRN-----------------------YETVFK 205

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLC 585
             D GEI + + I A  L++++    +    P I F D  +  +            +N C
Sbjct: 206 VEDTGEI-IKKSIDAKKLFKELAIQNWRFAEPGILFWDRISNWNLLSEDEEFEYAGTNPC 264

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTI 643
            E  L +       C LGS+ L +    N FD++KL S +  +V+ L++V+D  +  H +
Sbjct: 265 AEEPLPAG----GSCLLGSLILPSFVGENGFDFEKLKSAVVKSVKALNDVLDEGLPLHPL 320

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E+ ++S    R IGLG++G    L  L + Y +PE++E  D+    I   A+SAS  LA+
Sbjct: 321 EEQRESVRDWRQIGLGVLGVGDLLIKLGLKYGAPESLEFCDKVARTIIDTALSASALLAK 380

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E GA+  +K     Q  F +++                      E  + +K  G+RNS  
Sbjct: 381 EYGAFPRYKEEKILQSPFLLENA-------------------STETMELIKEYGLRNSQL 421

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSN--MSGDFTVVNSFLVNELKQRDLWDEAMI 821
           + IAPT +I  +  +S  I+P++   + +    + G+        +   K+    +    
Sbjct: 422 LTIAPTGSIGTMLEISTGIEPNFAFSFTRKTESLHGEDVYY-KVFIPIAKKYMEDNNLTE 480

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
                            D+L     TA  ++P   I+     QK ID + S  + L ++ 
Sbjct: 481 E----------------DELPDYFVTAQNLNPYDRIKMQGVWQKRIDASISSTINLVNKV 524

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           S ++++ +Y + W  GLK     R+        +  K  +            +       
Sbjct: 525 SVEEVEHLYIEGWKNGLKGMTIYRAGCDREGILTVEKKEEKNPEQALKEKMETIARGELK 584

Query: 941 PSS 943
           P +
Sbjct: 585 PIA 587


>gi|19881199|gb|AAM00816.1|AF485080_1 large subunit ribonucleotide reductase [Staphylococcus phage Twort]
          Length = 705

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 175/715 (24%), Positives = 294/715 (41%), Gaps = 76/715 (10%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L    K  +K T +    +  E      +EG   ++    + D  +  +        
Sbjct: 29  KEALEEDSKYIEKNTRNFDNEV--ERVRTLTKEGTYDKVFDS-IPDTIIEEMTKLAYSFN 85

Query: 290 DFAFEYLGLQILYDRYFLHINGS-----RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
                ++  Q  Y+ Y +           +E  +   +R A+ L   +  K   A E   
Sbjct: 86  FQFQSFMACQKFYESYAVTQYDKDDNPIFVEDYEQHNVREALYLFQDDYVK---AREMLI 142

Query: 345 LLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDL-YGIFGALQENAMLAKYSGGLGN 402
            L       +TP   NSG  +  +LSSC+L  V DD    I          +K +GG   
Sbjct: 143 QLMEQTLQPATPVYLNSGLGKRGELSSCYLFIVDDDTIESINFITDSVRQASKNAGGCAV 202

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           D T +R  G  ++G    S+GVIPF K    +    NQGGKR+G+   YL  +H D+ EF
Sbjct: 203 DLTRLRPRGTEVNGVPNASKGVIPFAKNIEQSVSYFNQGGKREGSAVCYLNIFHPDIHEF 262

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEI 520
              +K    D+ R   ++    IP+ FM+ + ++  +  F+  +V   +   L       
Sbjct: 263 SSSKKINASDKVRLDTLSIGVTIPNKFMELLKEDKYYYTFNVYDVKQKYGFTLNEINMSE 322

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y+ +    D  + K + +     +   +     E+G+P++ + D  N   P + +G V 
Sbjct: 323 YYDIFVNDDDIRKEKYYTR----DIMTDIARTQLESGYPYVFYIDNANDNHPLKKLGKVQ 378

Query: 581 SSNLCTE--------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            SNLC E               + N +     VC LGS+NL+            L  ++ 
Sbjct: 379 MSNLCCEVTQLQEVSDIFPYLQSHNDTIGNDVVCTLGSLNLVNVVEKGL-----LKESVD 433

Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           + +R L  V D +N   +   +K+N   RAIGLG M +   L    + Y S E+++IA+ 
Sbjct: 434 SGIRSLSKVTDLMNVPFLPSVQKANDELRAIGLGAMNWHGLLAKNMLSYGSRESLDIANS 493

Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AM 738
               I +++I +S+ELA+E G  +  FK S +  G      I    E R +        +
Sbjct: 494 LFSAIRYYSIKSSMELAKETGKVFKGFKESEYYTGEVFSSYIQKSHEPRTKKAKKVLEKV 553

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
              +   W+ L K VK  GM N     +APT +I+ +   + SI P    +  +   + D
Sbjct: 554 YIPTEEDWNSLSKDVKEYGMYNGYLNNLAPTQSISYVQNATSSIMPVPSPIENRRYGNMD 613

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             +   F+      +  ++                             TA+++D   +I 
Sbjct: 614 TYIPMPFMSP--ITQFFYESE---------------------------TAYKLDNKRIIN 644

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +++  QK +DQA S  LY++ E    KL  +Y  AW  GLK+ YY RS++   +E
Sbjct: 645 TSAVIQKHVDQAISTILYVESEIPTNKLVSLYYYAWEKGLKSLYYTRSQTLKVIE 699


>gi|153820327|ref|ZP_01972994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae NCTC 8457]
 gi|126509128|gb|EAZ71722.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae NCTC 8457]
          Length = 408

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 106/418 (25%), Positives = 169/418 (40%), Gaps = 23/418 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++           A   +M           +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKM-----------VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            L  I               G+G +   +R LG+ I G      G IPF K         
Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
           +QGG R GA   +   WH + E  L L+ N G +  R   M+    +  L  KR+ +   
Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352

Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            TLFSP +V  L+D +     EFE  Y  YE           + + A+ ++  ++   
Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQER 406


>gi|149408275|ref|YP_001294554.1| hypothetical protein ORF046 [Pseudomonas phage M6]
          Length = 620

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 126/668 (18%), Positives = 233/668 (34%), Gaps = 88/668 (13%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361
            + +     GS  E  +    R+A  L     + ++   +F + L    F+ +       
Sbjct: 23  QELHSQKYRGS-GESFREAMNRIAAAL----KDDDQHFADFRDALLGMRFLPAGRIQSAM 77

Query: 362 -GTRHPQLSSCFLTTV-----PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             TR     +C+++        D    I     E A   +  GG+G D++ +R  G  I 
Sbjct: 78  GSTRQVTPYNCYVSGTINDSFVDGEGSIMVRAAEAAATMRMGGGIGYDFSTLRPRGDLIR 137

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
                S G I F+ + +     V   G R+GA    +   H D+EEF+  ++   D +  
Sbjct: 138 KLQSHSSGPISFMHIFDAICKCVASSGHRRGAQMGVMRVDHPDIEEFIHAKQPGKDVQPL 197

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              +     +P+   ++                ++      +F     + E      E  
Sbjct: 198 WDLVAE---LPEGA-QKQQLIMSLQQTLKLTGFNVSVAITDKFMECVASGEPFPLTFEGW 253

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
            +R++ A ALW  ++   ++   P + F D  N  +   +   + ++N C E  L     
Sbjct: 254 TYREVDARALWDAIMRGTWDWAEPGVLFIDAINRMNNLWYCETIAATNPCGEQPLPPY-- 311

Query: 596 ETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
               C LGS NL+ +          FD+D+    I   VR +DNV+D   + + + K+  
Sbjct: 312 --GACLLGSFNLVKYIFKDGAGRYAFDWDQYREDIPQVVRAMDNVVDRAIYPLPQQKQEA 369

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R +GLG+ G  +A   L   Y SP  +    E ++ +   +  AS  +A+ +G++  
Sbjct: 370 KDKRRMGLGITGLANAAEALGHEYGSPAFLAFEAEVLDTLRDESYLASAHIAKVKGSFPK 429

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F    + QG F                     +   ++++  +   G+RNS+  +IAPT 
Sbjct: 430 FDKDKYLQGQF--------------------IKTLREDVRDAIAKYGIRNSHLTSIAPTG 469

Query: 771 TIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           TI+     VS  I+P +   + ++ +      V       ++        +         
Sbjct: 470 TISLCADNVSSGIEPVFAYSFDRTVIEFSGPRV-----ETVEDYGARVFGVRGKACSR-- 522

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
                            T  E      + + +   + +D A S    +  + S +    +
Sbjct: 523 ----------------VTVQE-----HVAALTVAAQRVDSAVSKTCNVPSDISWEDFKNV 561

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           Y  AW  G K     R     S                   +P +   +    S C  D 
Sbjct: 562 YVSAWEGGAKGCTTFRLGGKRSGILVVKD---------DGGEPEADAPAEEPASQCRIDP 612

Query: 949 -----ECE 951
                ECE
Sbjct: 613 ATGRRECE 620


>gi|51518028|ref|YP_067953.1| BORF2 [Macacine herpesvirus 4]
 gi|18025479|gb|AAK95423.1| BORF2 [Macacine herpesvirus 4]
          Length = 822

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 168/770 (21%), Positives = 282/770 (36%), Gaps = 109/770 (14%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E +L T LI   +     +P    +  R L  +L+ E +T    +  +    +    Y E
Sbjct: 6   ERELLTKLIDELKVKANVDPEADVLAGRLL-HRLKAESVTRTVAEYMEVFSDK---FYDE 61

Query: 255 YFCRYIEEGVKARLLH-ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
            F +  ++ ++AR+        ++ +  A  L   R            YD Y       R
Sbjct: 62  EFFQAHQDELEARVSAFAQSPAYERIVSAGYLSALR-----------YYDTYLYVGRNGR 110

Query: 314 IEMPQAFFMRVA----------------MGLALKETEKEKRAVEFY-NLLSSFHFMCSTP 356
            E    F+MR+A                +  A  E E +    ++Y   L+S    CSTP
Sbjct: 111 QESVPHFYMRLAGFCASTTCLYTGLRDALLRARPEIETDMEVFDYYFEHLTSQTVCCSTP 170

Query: 357 TLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            +  +G  +  L+SC LTT  +  +        +          G+G   T     G HI
Sbjct: 171 FMRFAGVENSTLASCILTTPGLSSEFEVTQALHRPLDRYLYERAGVGLGVTEYGKDGKHI 230

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
                        +++ N      N   KR  +V AY+E WH  + +FL+ +     +  
Sbjct: 231 SL----------LMRMINSHVEYHNYLCKRPVSVAAYMEPWHSQIFKFLETKVPENHE-- 278

Query: 475 RTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
           R   + T  ++P+LF K       + W LF P    +L  LYG+EFE  Y          
Sbjct: 279 RCPGIFTGLFVPELFFKLFRDEPWSDWYLFEPQNAGNLEKLYGEEFEREYYRLV-----T 333

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           E K   ++S  +L   ++    + G P+I  K+ CN    +   G   +S       L  
Sbjct: 334 EGKFCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNSANLCAEVLQP 393

Query: 593 SSEETAVCNLGSINLLAH----------FANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           S E  A CNL +I L                +    + L    R +V +       +  +
Sbjct: 394 SRETVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLGLPRLSVTMPGEGAIGDGFS 453

Query: 643 IEKAKKSNHT--------------------HRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
           + + + +                         ++GLG+ G       L   Y  P +  +
Sbjct: 454 LARLRDATQCATFVVACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPSSRSL 513

Query: 683 ADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
             E  E + F A+  S  +    R  +  FK S +  G F                    
Sbjct: 514 NKEIFEHMYFTALCTSNLIGLHTRKTFPGFKRSKYAGGWFHWHDWAGTG--------LSI 565

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
            +  W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +   
Sbjct: 566 PKDMWARLSERIVRDGLFNSQFVALMPTSGCAQLTGCSDAFYPFYANASTKVTNKEEALR 625

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH---ATAFEIDPMWLIE 858
            N            W    + D++  +   G I R+P+ LK+ +    TAF+ +   L++
Sbjct: 626 PNRAF---------WRHVRMDDMEAVNLVGGRISRLPERLKRRYLRFQTAFDYNQEDLMQ 676

Query: 859 SASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLR 904
            +  R  ++DQ+QS +L+L E        L  +  + + +GLKT  YY R
Sbjct: 677 MSRDRAPFVDQSQSHSLFLREEHAARASTLANLLVRGYELGLKTIMYYCR 726


>gi|56420954|ref|YP_148272.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus
           kaustophilus HTA426]
 gi|56380796|dbj|BAD76704.1| ribonucleoside-diphosphate reductase (major subunit) [Geobacillus
           kaustophilus HTA426]
          Length = 857

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 149/735 (20%), Positives = 266/735 (36%), Gaps = 135/735 (18%)

Query: 290 DFAFEYLGLQIL-YDRYFLHINGSRIEM------------P-QAFFMRVA-------MGL 328
           D  +E    ++L  D Y   + G   E             P + F+ ++A         +
Sbjct: 85  DIDWEAKKARVLIEDEYRHVLEGEEAETGIVVRSLDIIDKPLEIFYEQIAKRNATGLAAV 144

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386
              E ++++   +FY  L+S +F+ +   L+ +G+       +C++   V D   GI   
Sbjct: 145 EKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKEVTYFNCYVMPFVKDSREGISEH 204

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            ++   +    GG+G + + +R       G NGKS G + +L         V QGG R+G
Sbjct: 205 RKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHLVEQGGSRRG 264

Query: 447 AVCAYLETWHIDVEEFLDLRKNTG------------------------------------ 470
           A    L  WH D+ EF+  +                                        
Sbjct: 265 AQMIMLADWHPDIIEFIVSKMQNPRILRYLLENMEDEGIKKAARDKLKFTPLTERERAMY 324

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQN----AGWTLFSPD----------------EVSDL 510
           +   R  +        +  +K   +       +T+ +PD                E  + 
Sbjct: 325 EAIVRYKNAPDYGGFTEEIIKDAEEKLRTGGTYTVHNPDFLTGANISVCLTKEFMEAVEK 384

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK------------------MLTM 552
            + Y   F       E +      K           +                   +   
Sbjct: 385 DEEYALRFPDVETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIRARELWKLINIC 444

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH- 610
              +  P I F D  N  +  + +   V ++N C E  L       +VCNL +INL    
Sbjct: 445 ATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPY----SVCNLAAINLANMV 500

Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  DY+KL  T+   VR+ DNVID   + +E+ KK     R IGLG+MG    L  
Sbjct: 501 DKERKVIDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIGLGVMGLADLLIY 560

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y S E  ++ DE    I+  A  AS+ELA+E+G++    G          ++    
Sbjct: 561 CEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGSFPFLVG----------ETEEET 610

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            ++R+        +   +++++ +   G+RNS+ + +APT +   + GVS  ++P +   
Sbjct: 611 RKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFS 670

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +S   G F  V + +V E   +                   + E  P+ L     TA 
Sbjct: 671 YYRSGRLGKFIEVKADIVQEYLDK-------------------HPEADPNHLPPWFVTAM 711

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           ++ P    +     Q+W+D + S  +      + +++  +Y + W  G K        S 
Sbjct: 712 DLPPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLWRCGAKGGTVYVDGSR 771

Query: 909 TSVEKSTLKGVDGKL 923
              +  TLK  + ++
Sbjct: 772 -DAQVLTLKAEENQI 785


>gi|332877996|ref|ZP_08445726.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683958|gb|EGJ56825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 845

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 146/722 (20%), Positives = 264/722 (36%), Gaps = 125/722 (17%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G   E  P+    R+A  +A  E + E   +A E + LL
Sbjct: 19  FKGDELAARVWVNKYSMKDSYGHIYEVSPEDMHWRIANEIARIENKYENPLKAEEIFGLL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIIPAGSPMTGIGNNHQIASLSNCFVIGLDGQADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDAE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM    +   +T   P + S            
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKIDDEFMHAAIEGQSYTQQYPIDSSSPM--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                          V + ISA  LW+K++   +++  P + F D     S       + 
Sbjct: 245 ---------------VAKNISAQDLWKKIVHNAWKSAEPGVLFWDTILRESVPDCYADLG 289

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL A+  N       FD+D     ++ A R++D++
Sbjct: 290 FRTVSTNPCGEIPLCPYDSCRLLAINLYAYVVNPFTPEAYFDFDLFKKHVQLAQRLMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  L 
Sbjct: 350 IDLELEKIEMILQKIDADPESEEVKGTERHLWEKIYKKSGQGRRTGVGITAEGDMLAALG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + A E  + ++  A  +SV++A+ERGA+  F                    
Sbjct: 410 LRYGTQEATDFAVEVHKTVALQAYRSSVQMAKERGAFEIFDA----------------ER 453

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   +NR  R    EL + +   G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 454 EKNNPFINR-LREADPELYENMVKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   +  +K      E   +          
Sbjct: 513 RRRKVNPNDPEVHIDFIDETGDAFEEYIVYHHKFLTWMKINGYDTEKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+ +        ATA ++D +  ++     QKW+D + S+ + L +    + ++ +Y +
Sbjct: 565 EIDELVARSPYYKATANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNNVDEELVNQLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
           AW  G K     R  S + V  S               +          P       +  
Sbjct: 625 AWRSGCKGCTIYRDGSRSGVMISVKN------------EKKQPELPCKSPEVTEKRPQVL 672

Query: 952 VC 953
            C
Sbjct: 673 EC 674


>gi|162135089|ref|YP_001595830.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513936|emb|CAO77762.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 580

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/647 (18%), Positives = 230/647 (35%), Gaps = 87/647 (13%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTV----- 376
           R+A  L     + ++   +F + L    F+ +         TR     +C+++       
Sbjct: 3   RIAAAL----KDDDQHFADFRDALLGMRFLPAGRIQSAMGSTRQVTPYNCYVSGTINDSF 58

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D    I     E A   +  GG+G D++ +R  G  I      S G I F+ + +    
Sbjct: 59  VDGEGSIMVRAAEAAATMRMGGGIGYDFSTLRPRGDLIRKLQSHSSGPISFMHIFDAICK 118

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
            V   G R+GA    +   H D+EEF+  ++   D +     +     +P+   ++    
Sbjct: 119 CVASSGHRRGAQMGVMRVDHPDIEEFIHAKQPGKDVQPLWDLVAE---LPEGA-QKQQLI 174

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
                       ++      +F     + E      E + +R++ A ALW  ++   ++ 
Sbjct: 175 MSLQQTLKLTGFNVSVAITDKFMECVASGEPFPLTFEGRTYREVDARALWDAIMRGTWDW 234

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612
             P + F D  N  +   +   + ++N C E  L         C LGS NL+ +      
Sbjct: 235 AEPGVLFIDAINRMNNLWYCETIAATNPCGEQPLPPY----GACLLGSFNLVKYIYKDGA 290

Query: 613 -NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
               FD+D+    I   VR +DNV+D   + + + K+     R +GLG+ G  +A   L 
Sbjct: 291 GCFAFDWDQYREDIPQVVRAMDNVVDRAIYPLPQQKQEAKDKRRMGLGITGLANAAEALG 350

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y SP  +    E ++ +   +  AS  +A+ +G++  F    + QG F          
Sbjct: 351 HEYGSPAFLAFEAEVLDTLRDESYLASAHIAKVKGSFPKFDKDKYLQGQF---------- 400

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLY 790
                      +   ++++  +   G+RNS+  +IAPT TI+     VS  I+P +   +
Sbjct: 401 ----------IKTLREDVRDAIAKYGIRNSHLTSIAPTGTISLCADNVSSGIEPVFAYSF 450

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++ +      V                     ++ +   +  +            T   
Sbjct: 451 DRTVIEFSGPRV-------------------ETVEDYGARVFGVRG---------KTCSR 482

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +     + + +   + +D A S    +  + S +    +Y  AW  G K     R     
Sbjct: 483 VTVQEHVAALTVAAQRVDSAVSKTCNVPSDISWEDFKNVYVSAWEGGAKGCTTFRLGGKR 542

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT-----ECE 951
           S                   +P +   +    S C  D      ECE
Sbjct: 543 SGILVVKD---------DGGEPEADAPAEEPASQCRIDPATGRRECE 580


>gi|297529413|ref|YP_003670688.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. C56-T3]
 gi|297252665|gb|ADI26111.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. C56-T3]
          Length = 857

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 149/735 (20%), Positives = 266/735 (36%), Gaps = 135/735 (18%)

Query: 290 DFAFEYLGLQIL-YDRYFLHINGSRIEM------------P-QAFFMRVA-------MGL 328
           D  +E    ++L  D Y   + G   E             P + F+ ++A         +
Sbjct: 85  DIDWEAKKARVLIEDEYRHVLEGEEAETGIVVRSLDIIDKPLEIFYEQIAKRNATGLAAV 144

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386
              E ++++   +FY  L+S +F+ +   L+ +G+       +C++   V D   GI   
Sbjct: 145 EKTEEKRKEWFEKFYQELASLNFVPAGRVLYGAGSGKEVTYFNCYVMPFVKDSREGISEH 204

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
            ++   +    GG+G + + +R       G NGKS G + +L         V QGG R+G
Sbjct: 205 RKQVMEIMSRGGGVGTNGSTLRPRHTLARGVNGKSSGSVSWLDDIAKLTHLVEQGGSRRG 264

Query: 447 AVCAYLETWHIDVEEFLDLRKNTG------------------------------------ 470
           A    L  WH D+ EF+  +                                        
Sbjct: 265 AQMIMLADWHPDIIEFIVSKMQNPRILRYLLENMEDEGIKKAARDKLKFTPLTERERAMY 324

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQN----AGWTLFSPD----------------EVSDL 510
           +   R  +        +  +K   +       +T+ +PD                E  + 
Sbjct: 325 EAIVRYKNEPDYGGFTEDIIKDAEEKLRTGGTYTVHNPDFLTGANISVCLTKEFMEAVEK 384

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK------------------MLTM 552
            + Y   F       E +      K           +                   +   
Sbjct: 385 DEEYALRFPDVETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIRARELWKLINIC 444

Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH- 610
              +  P I F D  N  +  + +   V ++N C E  L       +VCNL +INL    
Sbjct: 445 ATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPY----SVCNLAAINLANMV 500

Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                  DY+KL  T+   VR+ DNVID   + +E+ KK     R IGLG+MG    L  
Sbjct: 501 DKERKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIGLGVMGLADLLIY 560

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
               Y S E  ++ DE    I+  A  AS+ELA+E+G++    G          ++    
Sbjct: 561 CEKAYGSEEGNQLVDELFRTIATTAYRASIELAKEKGSFPFLVG----------ETEEET 610

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            ++R+        +   +++++ +   G+RNS+ + +APT +   + GVS  ++P +   
Sbjct: 611 RKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFS 670

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y +S   G F  V + +V E   +                   + E  P+ L     TA 
Sbjct: 671 YYRSGRLGKFIEVKADIVQEYLDK-------------------HPEADPNHLPPWFVTAM 711

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           ++ P    +     Q+W+D + S  +      + +++  +Y + W  G K        S 
Sbjct: 712 DLPPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLWRCGAKGGTVYVDGSR 771

Query: 909 TSVEKSTLKGVDGKL 923
              +  TLK  + ++
Sbjct: 772 -DAQVLTLKAEENRI 785


>gi|82503213|ref|YP_401655.1| BORF2 [Human herpesvirus 4]
 gi|139424487|ref|YP_001129452.1| BORF2 [Human herpesvirus 4 type 2]
 gi|132602|sp|P03190|RIR1_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|238055302|sp|P0C702|RIR1_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|1334856|emb|CAA24842.1| unnamed protein product [Human herpesvirus 4]
 gi|23893601|emb|CAD53405.1| ribonucleoside-diphosphate reductase large chain [Human herpesvirus
           4]
 gi|82703963|gb|ABB89232.1| BORF2 [Human herpesvirus 4]
          Length = 826

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 165/802 (20%), Positives = 282/802 (35%), Gaps = 99/802 (12%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E +L + LI   +     +P    +  R L    R +  +  +   +       +    E
Sbjct: 8   EHELLSKLIDELKVKANSDPEADVLAGRLL---HRLKAESVTHTVAEYLEVFSDKFYDEE 64

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +F  + +E             ++ +  +  L   R            YD Y       + 
Sbjct: 65  FFQMHRDELETRVSAFAQSPAYERIVSSGYLSALR-----------YYDTYLYVGRSGKQ 113

Query: 315 EMPQAFFMRVA----------------MGLALKETEKEKRAVEFY-NLLSSFHFMCSTPT 357
           E  Q F+MR+A                +  A  E E +    ++Y   L+S    CSTP 
Sbjct: 114 ESVQHFYMRLAGFCASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPF 173

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +  +G  +  L+SC LTT             E  +       LG       G+G  + G 
Sbjct: 174 MRFAGVENSTLASCILTTP--------DLSSEWDVTQALYRHLGRYLFQRAGVGVGVTGA 225

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
               + +   +++ N      N G KR  +V AY+E WH  + +FL+ +     +  R  
Sbjct: 226 GQDGKHISLLMRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFLETKLPENHE--RCP 283

Query: 478 DMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            + T  ++P+LF K       + W LF P +  DL  LYG+EFE  Y            K
Sbjct: 284 GIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFEREYYRLVTA-----GK 338

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
              ++S  +L   ++    + G P+I  K+ CN    +   G   ++       L  S +
Sbjct: 339 FCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEVLQPSRK 398

Query: 596 ETAVCNLGSINLLAH----------FANNQFDYDKLASTIRTAV---------------- 629
             A CNL +I L                +    + L +  R +V                
Sbjct: 399 SVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAVGDGFSLAR 458

Query: 630 -RVLDNVIDINCHTIEKAKKSNHTHR---AIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            R                    +  R   ++GLG+ G       L   Y  P +  +  E
Sbjct: 459 LRDATQCATFVVACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPPSRSLNKE 518

Query: 686 SMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
             E + F A+  S  +    R  +  FK S +  G F                     R 
Sbjct: 519 IFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTD--------LSIPRE 570

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +    N 
Sbjct: 571 IWSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEEALRPNR 630

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                ++   L D   ++ +    G +  +            TAF+ +   LI+ +  R 
Sbjct: 631 SFWRHVR---LDDREALNLV---GGRVSCLPEALRQRYLRFQTAFDYNQEDLIQMSRDRA 684

Query: 865 KWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            ++DQ+QS +L+L E        L  +  +++ +GLKT  YY R   A   +   ++   
Sbjct: 685 PFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCRIEKA--ADLGVMECKA 742

Query: 921 GKLNAVPVTDPNSSTHSLGIPS 942
               +VP  + N  + +  +P 
Sbjct: 743 SAALSVPREEQNERSPAEQMPP 764


>gi|120436488|ref|YP_862174.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803]
 gi|117578638|emb|CAL67107.1| ribonucleotide reductase large subunit [Gramella forsetii KT0803]
          Length = 850

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 258/685 (37%), Gaps = 117/685 (17%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
           F  + L  ++  ++Y L   +G+  E  P     R+A  +A  E          E ++L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSDGNIYEQTPDDMHRRIAKEIARVEKKYPNSMSEDEVFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTT---VPDDLYGIFGALQENAMLAKYSGGL 400
            +F ++    +         Q   LS+CF+     V D   GI    QE   L K  GG+
Sbjct: 86  KNFKYIVPQGSPMAGIGNPYQVGSLSNCFVIGNDGVSDSYGGIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSAVKNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSVSINHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FMK V  N  +T   P                
Sbjct: 205 DFIDAKM----EQGKVTGANVSVRIDDNFMKAVKNNGNYTQTYP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP-CNIRSPQQHVGVV 579
                       + K  + I A  LW+K++   +++  P I F D   N   P  +  + 
Sbjct: 245 --------VFSKDPKFSKDIEADKLWKKIVHNAWKSAEPGILFWDTVINESVPDCYDDLG 296

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDN 634
           + +                 C L +INL ++          F+Y+     I  A R++D+
Sbjct: 297 YKTVSTNPCGEIP-LCPYDSCRLLAINLFSYVEEPFTEKAHFNYELFKKHIGAAQRIMDD 355

Query: 635 VIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSALHLL 670
           +ID+    I+                          +K     R  G+G+      L  L
Sbjct: 356 IIDLELEKIDKIIAKIDADPENEEVKAVEKNLWLNIRKKADEGRRTGIGITAEGDMLAGL 415

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            I Y S E ++ + +  + I+  A  ASV+ A+ERGA+S F                   
Sbjct: 416 GIRYGSKEGIDFSVDIHKKIALAAYRASVDTAKERGAFSIFD----------------SE 459

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             +D   + R  +   ++L   +   G RN   + IAPT T + +   S  I+P +  +Y
Sbjct: 460 REKDNPFILR-LKEADEKLYYDMLEYGRRNIALLTIAPTGTTSLMTQTSSGIEPVFLPVY 518

Query: 791 VKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            +                        ++ V +      ++                + + 
Sbjct: 519 KRRRKVNPNDKNARVDFVDEVGDSWEEYVVFHHRFKEWMRANGHDTNE--------NYTQ 570

Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
             ++++   L   + AT+ ++D +  ++     QKWID + S+ + L ++ S   +  +Y
Sbjct: 571 EELDKLV-KLSPYYQATSNDVDWLSKVKMQGAVQKWIDHSISVTINLPNDASEDLVGKLY 629

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914
            +AW  G K     R  S + V  S
Sbjct: 630 LEAWEAGCKGVTVYRDGSRSGVLIS 654


>gi|312130912|ref|YP_003998252.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent
           [Leadbetterella byssophila DSM 17132]
 gi|311907458|gb|ADQ17899.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Leadbetterella byssophila DSM 17132]
          Length = 851

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 130/682 (19%), Positives = 250/682 (36%), Gaps = 114/682 (16%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLL 346
           F  + L  ++   +Y L    G+  E  P+    R+A  +A  E++     +  E  +L+
Sbjct: 26  FKGDDLAAKVWVTKYALKDSEGNIYEKSPEDMHHRIASEIARVESKYPSPMKYEEILDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTT----VPDDLYGIFGALQENAMLAKYSGG 399
             F ++    +         Q   LS+CF+        D   GI    QE   L K  GG
Sbjct: 86  RDFKYIVPQGSPMTGIGNPFQIASLSNCFVIGHPNGTGDSYGGIMKIDQEQVQLMKRRGG 145

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D 
Sbjct: 146 VGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSINHPDA 204

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           E+F+D +     +  +    N +  I D FMK V   + +T   P    +          
Sbjct: 205 EDFIDAKL----EAGKITGANVSVRIDDDFMKAVKNKSAYTQKFPIFSPNP--------- 251

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQH 575
                          ++ ++I A  +W+K++   +++  P I F D              
Sbjct: 252 ---------------RMTKEIDAEKIWQKIVHNAWKSAEPGILFWDTIRRESLPDCYADL 296

Query: 576 VGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
                S+N C EI L           NL S  +     +  FD+D     +  A R++D+
Sbjct: 297 GYETVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKKDAYFDFDLFKQHVGAAQRMMDD 356

Query: 635 VIDINCHTIEKAKKS------------------------NHTHRAIGLGLMGFQSALHLL 670
           +ID+    I+   +                             R  G+G+      L  L
Sbjct: 357 IIDLELEKIDAILQKIDEDPEDEEIKRIEKNLWLEIRTKAREGRRTGVGITAEGDMLAAL 416

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            I Y   E +  + +  + ++  A  AS E+A+ERGA+S F                   
Sbjct: 417 GIRYGREEGIAFSIKVHQTLTLAAYRASCEMAKERGAFSIFDAQR--------------- 461

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E  +   +    +     L   ++  G RN   + IAPT + + +   +  I+P +  +Y
Sbjct: 462 EKNNPFLLR--IKSVDPALYNDLQEYGRRNIALLTIAPTGSTSILTQTTSGIEPVFMPVY 519

Query: 791 VKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            +                        ++ V +      ++ + +            + S 
Sbjct: 520 KRRRKVNPNDKNVRVDFVDEVGDSWEEYVVFHHKFKTWMEAQGIDTSK--------NLSD 571

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
             I+ +        AT+ ++D +  ++     QKW+D + S+ + + +E + + ++ +Y 
Sbjct: 572 AEIDELIAQSPYYKATSNDVDWVSKVKMQGEIQKWVDHSISVTINIPNEATEELVNELYI 631

Query: 891 QAWLMGLKTTYYLRSRSATSVE 912
            AW  G K     R  S + V 
Sbjct: 632 TAWEAGCKGVTVYRDGSRSGVL 653


>gi|328464292|gb|EGF35722.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           helveticus MTCC 5463]
          Length = 505

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 138/528 (26%), Positives = 235/528 (44%), Gaps = 63/528 (11%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
               S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D++ R 
Sbjct: 1   MKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRI 60

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             ++    IPD+  +   +N    LFSP    D+   YGK         E Q      ++
Sbjct: 61  KSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRI 117

Query: 537 FRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
            +  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++  
Sbjct: 118 KKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPS 177

Query: 596 ET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHT 642
                           CNLGS+N+ A   +     DKL   +  +V+ L+ V    +   
Sbjct: 178 TYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDC 233

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
               KK N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S +LA
Sbjct: 234 APSIKKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLA 293

Query: 703 QERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVK 754
           ++ GA+  FK S +  G +    I          + E+  +  +   ++  W+EL  ++K
Sbjct: 294 EKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIK 353

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++         
Sbjct: 354 KTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------- 404

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL
Sbjct: 405 ---------------------KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISL 443

Query: 874 NLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            L++++  + + L+  Y  A+     + YY+R R       E  T   
Sbjct: 444 TLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVREKVLAGSENLTADE 491


>gi|291296467|ref|YP_003507865.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent
           [Meiothermus ruber DSM 1279]
 gi|290471426|gb|ADD28845.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Meiothermus ruber DSM 1279]
          Length = 983

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 135/617 (21%), Positives = 239/617 (38%), Gaps = 88/617 (14%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVA 431
           +  VPDD+ GI  A +  + LA        D++ +R  GA I G+ G S G + FL ++ 
Sbjct: 208 VLVVPDDMRGIIEAAKSASSLAVKGQEPHVDFSSLRPEGAPIRGSGGTSSGPVSFLVEIF 267

Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           ++     N                        QGG R+GA  A +   H D+ +FL  + 
Sbjct: 268 DNFLEWANLGAEKAGPVATLRYVYAPVLRVVRQGGTRRGAGMATIAIDHPDLLDFLTAKD 327

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              +         N +  + + F + +  +  W    P EV   +  Y  +        +
Sbjct: 328 LDREASEGDISTFNISILVTEAFWQTLQADGLW-AVEPSEVPGKYYPYPVQGPYTGALPD 386

Query: 527 -----RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--- 578
                +   R       K+ A  LW ++    + TG P + F D  N  S  +++G    
Sbjct: 387 LPERAQDGARPIPVYDGKVPAKWLWHEIAWHAWATGEPGLIFVDRINELSALKNLGPRYQ 446

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + S+N C EI L         C+LG+INL A+  N  F++ +    +RTAVR LDNV+D+
Sbjct: 447 IRSTNPCGEIPLTVG----EPCDLGAINLAAYVENGAFNFAEFRKDVRTAVRFLDNVLDV 502

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
           N   +E  + ++ T R +GLG+MG    L  + +PY+S     +  + M  +   AI+ S
Sbjct: 503 NVFALEDNRVASQTLRRLGLGVMGLADMLIKMGLPYSSEAGRRVVAQVMNAMREEAIAES 562

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
             L QERG +  ++ +        I                                   
Sbjct: 563 ERLGQERGVFPVYEQNRAAFEALGIRP--------------------------------R 590

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL-------- 810
           RN   + +APT T + + GVS  I+P +     +        +++   V  +        
Sbjct: 591 RNVAVLTVAPTGTTSMLMGVSSGIEPMFSPFMWRRIGGQYKALLHPLFVEMMEQFPATGP 650

Query: 811 -KQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
            ++   W+ EA+I  ++ + G++  +E IP  +  +   A ++ P+  +      Q   D
Sbjct: 651 FEKDGAWNWEAIIEAIQANHGTVKGLEGIPAAIALVFEGAHDVPPLDHVRMQGVVQTAFD 710

Query: 869 ------QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
                  + S  + L    + + ++  Y +A++ G K     R  S      S  K    
Sbjct: 711 AEGYAANSLSKTINLPNQATVEDVEAAYTEAYMTGCKGITVYRDGSREFQVLSVSKEEKK 770

Query: 922 KLNAVPVTDPNSSTHSL 938
           +  A   +    +    
Sbjct: 771 EEKAQSKSQETVAVQPA 787



 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 38/178 (21%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLSSF 349
           F+     I   +Y    +G         F RVA  +A  E    +K+  + +FY L++S 
Sbjct: 9   FDDHAQAIAKRQYMQPGDGDVF----GMFRRVATWVASPEKSEQDKQYWSEQFYRLMASK 64

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN----AMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+    +     F  + E     A++ K  GG G +  
Sbjct: 65  RFCPGGRVLAGAGTQHGNVLNCFVQGATEHDPSSFDGVMEVATKLALVTKVGGGNGVNLD 124

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           P            G    V  F                      AY+   H DVE+F+
Sbjct: 125 PYVS-----RKHAGPRGTVRGF----------------------AYIAADHADVEDFI 155


>gi|288802022|ref|ZP_06407463.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica D18]
 gi|288335457|gb|EFC73891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella melaninogenica D18]
          Length = 866

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 145/725 (20%), Positives = 275/725 (37%), Gaps = 103/725 (14%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           +  +    FD  + A+   +  D        ++  ++Y +  + G+  E  P+    R+A
Sbjct: 1   METKQTYSFDEAFQASLAYFGGDEL----AARVWVNKYAMKDSFGNIYEKSPEQMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E + +    A E ++LL  F ++    +       + Q   LS+CF+  +    
Sbjct: 57  NEIARIENKYKNPLTAQEVFDLLDHFRYIIPAGSPMTGIGNNYQVASLSNCFVIGLDGNA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D T +R  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLTHIRPKGSPVNNSALTSTGLVPFMERYSNSTR- 175

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
                 R+GA+   +   H D E F+D +     +  +    N +  I D FM+ V ++ 
Sbjct: 176 EVAQDGRRGALMLSVSIKHPDSEAFIDAKM----EEGKVTGANVSVKITDEFMQAVVEDK 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P                            E  V ++ISA ALW K++   +++ 
Sbjct: 232 TYVQQFPTNS------------------------SEPSVTKEISAKALWEKIVHNAWKSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P + F D     S       +    + T             C L S+NL ++  +   D
Sbjct: 268 EPGVLFWDTIIRESIPDCYADLGFQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFTD 327

Query: 618 Y-----DKLASTIRTAVRVLDNVIDIN------------------------CHTIEKAKK 648
           +     +      + A R++D++ID+                          H  EK KK
Sbjct: 328 HARFDMELFKRHAQLAQRLMDDIIDLEMEKIDLIMSKIKTDPQVDEVKSAEYHLWEKIKK 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      +  + + Y + EA + + +    ++ +A  +SV +AQERGA+
Sbjct: 388 KSCQGRRTGVGITAEGDMIAAMGLRYGTQEATDFSVDIHRTLALNAYRSSVTMAQERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
                                 E ++   +    +    +L + +K  G RN  C+ IAP
Sbjct: 448 EI---------------YDAKREEKNPFILR--LKEADGQLYEDMKKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNEL-----------KQRDLW 816
           T T + +   +  I+P +  +Y +      + T V+   V+E+           ++   W
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTW 550

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
            E    D K    S   I+ +        ATA ++D +  +      QKW+D + S+ + 
Sbjct: 551 MEVNGIDTKKKY-SQEEIDELVKRSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVN 609

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           L      + ++ +Y +AW  G K     R  S + V  S  K    K       +     
Sbjct: 610 LPNQVDEELVNKLYVEAWRSGCKGCTIYRDGSRSGVMISVSKKDKTKDEKPVDEEKVKDL 669

Query: 936 HSLGI 940
           +S   
Sbjct: 670 NSAEE 674


>gi|160889318|ref|ZP_02070321.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492]
 gi|317479653|ref|ZP_07938778.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36]
 gi|156861325|gb|EDO54756.1| hypothetical protein BACUNI_01741 [Bacteroides uniformis ATCC 8492]
 gi|316904218|gb|EFV26047.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 4_1_36]
          Length = 845

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 136/712 (19%), Positives = 267/712 (37%), Gaps = 113/712 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E        + E + LL
Sbjct: 19  FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNPLSSEELFGLL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+   +   +T   P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKPYTQQYPIDA------------- 240

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       E    + I A ALW+K++   +++  P + F D     S       + 
Sbjct: 241 -----------TEPAFQKDIDASALWKKIVHNAWKSAEPGVLFWDTILKESVPDCYADLG 289

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  N       FD++     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFELFKKHVALAQRIMDDI 349

Query: 636 IDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHLLH 671
           ID+    IE+                          K +   R  G+G+      L  L 
Sbjct: 350 IDLELEKIERIMSKIDADPESEDVKHTERVLWQKIYKKSAQGRRTGVGITAEGDMLAALG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +++  + ++ +A  +S+E+A+ERGA+  +                    
Sbjct: 410 LRYGTEEATEFSEQVHKTVALNAYRSSIEMAKERGAFEVYD----------------TER 453

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   +NR  R    E+ + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 454 EKNNPFINR-LREADPEMYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  ++ +        +          
Sbjct: 513 RRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKFVTWMEAQGYNPAKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            ++ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           AW  G K     R  S + V  ST      +L          +   +     
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISTKSDKKSELPPCKPPTVVETRPRILDADV 676


>gi|270295907|ref|ZP_06202107.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273311|gb|EFA19173.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 845

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 136/712 (19%), Positives = 267/712 (37%), Gaps = 113/712 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E        + E + LL
Sbjct: 19  FQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNPLSSEELFGLL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+   +   +T   P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLTDDFMQAAIEGKPYTQQYPIDA------------- 240

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       E    + I A ALW+K++   +++  P + F D     S       + 
Sbjct: 241 -----------TEPAFQKDIDASALWKKIVHNAWKSAEPGVLFWDTILKESVPDCYADLG 289

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  N       FD++     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFELFKKHVALAQRIMDDI 349

Query: 636 IDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHLLH 671
           ID+    IE+                          K +   R  G+G+      L  L 
Sbjct: 350 IDLELEKIERIMSKIDADPESEDVKHTERVLWQKIYKKSAQGRRTGVGITAEGDMLAALG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +++  + ++ +A  +S+E+A+ERGA+  +                    
Sbjct: 410 LRYGTEEATEFSEKVHKTVALNAYRSSIEMAKERGAFEVYD----------------TER 453

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   +NR  R    E+ + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 454 EKNNPFINR-LREADPEMYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  ++ +        +          
Sbjct: 513 RRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKFVTWMEAQGYNPAKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            ++ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EVDALVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           AW  G K     R  S + V  ST      +L          +   +     
Sbjct: 625 AWKSGCKGCTVYRDGSRSGVLISTKSDKKSELPPCKPPTVVETRPRILDADV 676


>gi|332981533|ref|YP_004462974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mahella australiensis 50-1 BON]
 gi|332699211|gb|AEE96152.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mahella australiensis 50-1 BON]
          Length = 1112

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 108/454 (23%), Positives = 186/454 (40%), Gaps = 52/454 (11%)

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV--FRKISAVALWRKMLTML 553
              + + S  E+          FE    +  ++ D  + ++  +++      +   +  +
Sbjct: 549 TKEYHIRSGHELVITSSNLAIFFEKVGFSDAKKHDLLKQRLAEYKRAINRERFIATVDEI 608

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----- 608
            + G   +   D             +   N C E  L         CNLGSINLL     
Sbjct: 609 VQAGEKGV--YDVQIPGVNAFDANGICVHN-CGEQPLLPY----ESCNLGSINLLSVVQP 661

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 + +Y KLA  + TAV  LDNVID+N + + + +K     R IGLG+MG+   L 
Sbjct: 662 VDGDKWEINYAKLARIVDTAVHFLDNVIDVNLYPLPEIEKMTKRMRKIGLGVMGWADMLF 721

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
            L IPY S EA+E+  + M+FI   A   S ELA++RGA+ +++ S+W            
Sbjct: 722 RLGIPYNSDEAIELGTKLMKFICDRARQQSAELAEQRGAFPAYEQSIW------------ 769

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
                                K +     +RN+    IAPT +I+ I GVS  I+P +  
Sbjct: 770 ---------------------KDKGLK--VRNATVTTIAPTGSISIIAGVSSGIEPLFAI 806

Query: 789 LYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +V++ M       V+       KQR  +   ++  +  H GSI +++ IPDD+K++  T
Sbjct: 807 SFVRNVMDNTQLPEVHPIFEEVAKQRGFYSAELMRQIA-HQGSIQHMDGIPDDVKRVFVT 865

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A +I P + +   +  Q++ D A S  +      + + +  +Y  A+ +G K     R  
Sbjct: 866 AHDISPEYHVRMQAAFQRYTDNAVSKTVNFPNSATQEDVRQVYILAYKLGCKGVTIYRDG 925

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           S  +   +         + +   +P         
Sbjct: 926 SRETQVLNIGDKDKVGADVMIQPEPTIIPRPRPE 959



 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 139/303 (45%), Gaps = 38/303 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFY 343
                  +++L  RY      G+ IE P+  F RVA  +A  ++  + +        EFY
Sbjct: 1   MKLTDNAIKVLEKRYLAKDEQGNIIETPEQMFRRVAHHVAQADSIYDPKVDVSKTEQEFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           ++++   F+ ++PTL N+G    QLS+CF+  + D + GIF +++  A++ K  GG G  
Sbjct: 61  DIMTELEFLPNSPTLMNAGRPLGQLSACFVLPIEDSMEGIFDSVKNAALIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +K+  D      + N +  I + FM+ V ++  + L  P                   
Sbjct: 181 QCKKDNSD----ITNFNISVGITEKFMEAVEKDEEYDLIDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      K+ R++ A  ++  ++ M +  G P I F D  N  +    +G + S+N
Sbjct: 220 ----------GKITRRLRARQVFDLIVDMAWHNGEPGIVFLDRINKDNVVPALGEIESTN 269

Query: 584 LCT 586
            C 
Sbjct: 270 PCI 272


>gi|325968165|ref|YP_004244357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707368|gb|ADY00855.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Vulcanisaeta moutnovskia 768-28]
          Length = 1312

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 118/466 (25%), Positives = 212/466 (45%), Gaps = 30/466 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +++I+  +G    F+ ++L   ++ A  G+ D    I   +    +      S+L   + 
Sbjct: 13  RIRILKRNGNTEDFSREKLVRSLKLA--GVPDPDLVINALDIKGTL----PSSELSDRVQ 66

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                ++  +  +      +LL  + ++V      K         +  Y E F  +   G
Sbjct: 67  LIMLNMVTDDLKWHDAARNYLLWSMYKQVWGKDVVKAINDGRTRFEDAYREGFRAWFRTG 126

Query: 264 VKARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319
           ++ R+            +  LA  L   RD    Y G++ L  RY L   +GS  E PQ 
Sbjct: 127 LELRIWDSEMSAWYAQHIDELAKYLDPSRDLLLTYNGVRTLMSRYLLKRLDGSFFEAPQY 186

Query: 320 FFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            +MR AMG+A  E     +       FY+L+S    M ++PTL+N+ TR  QLS+CF+  
Sbjct: 187 LWMRTAMGVAYAELKYGGDPITWTRRFYDLMSQLKLMPNSPTLYNAMTRLGQLSACFVVP 246

Query: 376 VPDDL--------------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           + D L              +GI  AL+  A++ +  GG+G ++  +R  G  +  T G +
Sbjct: 247 IDDCLSRESDTNREDPECNFGIMDALRLAALIFQSGGGVGYNFGKLRPEGDIVRSTTGIA 306

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F+K+ +     + QGGKR+GA    L  WH D+E+F+  +     D  +  + N 
Sbjct: 307 SGPLSFMKLFDTLVDTIKQGGKRRGAQMGMLFWWHPDIEKFITSKSGELKDI-QLQNFNI 365

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  I D FM++  +     L +P E   L+  +G+EF   YE        G+I+++R+I+
Sbjct: 366 SVAIDDHFMQKALKGEDIYLVNPRECPCLYKTWGEEFIKCYEGCIEAIKAGKIRIWRRIN 425

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVGVVHSSNLCT 586
           A  LW K++   +++G P +  +D  N   + +    V++++N C 
Sbjct: 426 AKELWDKIVKSAWDSGDPGLWNRDLANYINNEKIPGEVINATNPCV 471



 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 165/385 (42%), Gaps = 40/385 (10%)

Query: 593  SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
            S  +   CNLGSINL+ +  + + D+D LA  ++ AVR LD+VID+N    ++ +K    
Sbjct: 891  SLYDFESCNLGSINLVKYVYDGRIDWDSLARDVQLAVRFLDDVIDVNKLPHDRLRKRVLE 950

Query: 653  HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
             R IGLG  G    L  L + Y SP+A+ +++E   FI+  A+ AS+ELA+E+G Y ++K
Sbjct: 951  TRRIGLGANGLADTLIALGLKYDSPQALAVSNELASFIARMAVRASIELAKEKGVYPAYK 1010

Query: 713  GSLWDQGVFPI-DSIGLLAEVRDELAMN-----------------------------RTS 742
             S W +GV P       L +    +  +                             R  
Sbjct: 1011 HSDWAEGVLPWTKHRERLEKFSSAIDKDAVDEYLKTLDVGYGDIKVKAIIDGATTVLRGY 1070

Query: 743  RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802
            +    +L   V TIG+RN + M+IAP  + + I GV+ SI+P +   Y+++   G     
Sbjct: 1071 KASDSDLSIDVSTIGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKLIEY 1130

Query: 803  NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK--KIHATAFEIDPMWLIESA 860
            N   +  L Q    DEA  S ++ +         +P D     +  TA EI   W +   
Sbjct: 1131 NYTALKLLMQTKALDEATRSFVEEYG-------ILPRDHPLANLLRTAHEIHWKWHVYMQ 1183

Query: 861  SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
                +W D   S  + +  +   + ++  YR AWL+        R +S +     T    
Sbjct: 1184 VTWARWNDSGVSKTINMPSDTPIEDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGVKG 1243

Query: 920  DGKLNAVPVTDPNSSTHSLGIPSSC 944
                 +V V +    T       + 
Sbjct: 1244 AEAKPSVEVKEVKVETKPKVEAKAS 1268


>gi|78044854|ref|YP_359531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           intein-containing [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996969|gb|ABB15868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           intein-containing [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 1101

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 39/347 (11%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINL     + + D++ L  T++ AVR LDNVID+N + + + +K     R I
Sbjct: 624 YESCNLGSINLANMVKDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTRKI 683

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGF   L  L+IPY S EA+ +AD+ MEFI+  +  AS ELA+ RG + ++K S+W
Sbjct: 684 GLGVMGFADMLIKLNIPYDSEEALNLADKVMEFINKKSKEASAELARVRGTFPAWKKSVW 743

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                                             K+     +RN+    IAPT +I+ I 
Sbjct: 744 A---------------------------------KKGLK--LRNATTTTIAPTGSISIIA 768

Query: 777 GVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           GVS  I+P +   + +  +   D   V+       ++   + E +++++    G I  I 
Sbjct: 769 GVSSGIEPVFALAFKRHILDRKDIVEVHRLFEQHARENGYYSEKLMNEVAKT-GRITGIA 827

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
            +P++ K++  TA +I P W ++  +  QK  D A S  + +    + + +   Y  A+ 
Sbjct: 828 GVPEEAKRLFVTALDIAPEWHVKMQAVFQKHTDNAVSKTINMPNSATVEDVKESYLLAYK 887

Query: 895 MGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +G K     R  S    V  + L           +            
Sbjct: 888 LGCKGLTVYRDGSREEQVLNAGLNETKKDEKPEELKTYKVVPRPRPT 934



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 137/301 (45%), Gaps = 37/301 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-----EKRAVEFYNL 345
                 L++L  RY      G  IE P+  F RVA  +A  E        E+ A EFYN 
Sbjct: 3   KLTENALKVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNF 62

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           +++  F+ +TPTL N+G    QLS+CF+  V D +  IF A++ +A++ K  GG G  ++
Sbjct: 63  MTALDFLPNTPTLVNAGRPLGQLSACFVLPVGDSMEEIFDAVKYSALIHKSGGGTGFSFS 122

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+  
Sbjct: 123 RLRAKGARVRSTGGIASGPVSFMKVFNAATEAVKQGGVRRGANMGVLRCDHPDILEFITA 182

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525
           +++  D      + N +  + D FMK + ++  + L  P                     
Sbjct: 183 KEDNRD----ITNFNISVALTDKFMKALEEDGEYELIEPST------------------- 219

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                    +V  ++ A  ++ ++    ++ G P + F D  N  +    +G + S+N C
Sbjct: 220 --------GEVVGRLRAREVFERIARNAWKNGEPGVIFIDRINAANVVPELGEIESTNPC 271

Query: 586 T 586
            
Sbjct: 272 V 272


>gi|212550980|ref|YP_002309297.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549218|dbj|BAG83886.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 867

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 132/715 (18%), Positives = 253/715 (35%), Gaps = 113/715 (15%)

Query: 282 ANDLKYERDFAF-EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA---MGLALKETEK 335
               K   D+   + L  ++  D+Y L  N G   E  P     R+A   + +  K    
Sbjct: 4   EEVYKSSLDYFCGDELAAKVFVDKYALKSNKGEYFESTPNEMHQRIAREIVRIEQKYPNP 63

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS---SCFLTTVP-DDLYGIFGALQENA 391
                    ++S F+++              QL+   +CF+     D   GI    +E  
Sbjct: 64  ILTEKNILEVISDFNYLIPQGGNMFGIGNSYQLTSLSNCFVIGNRTDSYGGIMRTDEEQI 123

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   
Sbjct: 124 QLMKRRGGVGHDLSHIRPRGSPVNNSAITSTGMVPFMERYSNSTR-EVAQEGRRGALMLS 182

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           +   H ++E F+D +     +  +    N +  + D FM+ V  N  +    P +  +  
Sbjct: 183 MSVEHPEIESFIDAKI----EEGKVTGANISVKLTDEFMRAVESNRSFIQRFPIDSENPQ 238

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
                                   + ++I A  LW K++   +++  P + F D     S
Sbjct: 239 ------------------------IIKEIDAKDLWNKIIHNAWQSAEPGVLFWDTILRES 274

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIR 626
                       + T             C L +INL ++          FD+D     + 
Sbjct: 275 IPDCYIDSGFGTVSTNPCGEIPLCPYDSCRLLAINLYSYVKQPFKKEAEFDFDLFEEHVA 334

Query: 627 TAVRVLDNVIDINCHT------------------------IEKAKKSNHTHRAIGLGLMG 662
            A R++DN++D+                             EK +      R IG+G+  
Sbjct: 335 LAQRMMDNIVDLEVEKIDAILMKIISDYESDEIKHTEQLLWEKIRHKTLIGRRIGIGITA 394

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
               L  L   Y + EA   A+   + ++     ASVE+A+ERGA+  F           
Sbjct: 395 EGDMLAALGFRYGTEEATNFAERIQKVLALSVYRASVEVAKERGAFEIF----------- 443

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
                +  E  +        +    +L + ++  G RN  C+ IAPT T + +   +  I
Sbjct: 444 ----NIELEKNNPFIHR--LKEVDSQLIEDMQQFGRRNIACLTIAPTGTTSLMSQTTSGI 497

Query: 783 DPSYQNLYVKSNMSG-------------------DFTVVNSFLVNELKQRDLWDEAMISD 823
           +P +  +Y +                        ++TV +   V  ++ +        + 
Sbjct: 498 EPVFLPVYKRRRKVNPSDEITKIDFVDEMGDSWVEYTVFHHKFVKWMEVQGYPTTRKYAQ 557

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
                     I+ +        +T+ ++D +  ++   R Q+W+D + S+ + L   + +
Sbjct: 558 --------REIDALVAKSPYYKSTSNDVDWLQKVKMQGRIQRWVDHSISVTINLPNETKE 609

Query: 884 KLDF-IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           +L   +Y +AW  G K     R  S   V  +T K            +      S
Sbjct: 610 ELVNYLYIEAWKSGCKGCTVYRDGSRNGVLVTTSKENHKIDGGKEYGENLQEMKS 664


>gi|298383753|ref|ZP_06993314.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 1_1_14]
 gi|298263357|gb|EFI06220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 1_1_14]
          Length = 845

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 142/714 (19%), Positives = 259/714 (36%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALTAKELYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +         Q   LS+CF+  V    D    I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P E ++         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKPYIQQYPIESANPTT------ 245

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQ 574
                              ++I A  LW+K++   +++  P + F D             
Sbjct: 246 ------------------TKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 575 HVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                 S+N C EI L           NL S  +     +  FD++     +  A R++D
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFELFKKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMEKIDQDPEGEEVKHAERNLWNKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +              I  L
Sbjct: 408 LGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYSNER----EQNNPFIQRL 463

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           AE                EL   +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 464 AEA-------------DPELYAEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++                  S
Sbjct: 511 YKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPAKRY--------S 562

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ +        AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y
Sbjct: 563 QEEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  ST       L          +   +     
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISTKSDKKETLPPCKPPTVVETRPRILEADV 676


>gi|160885202|ref|ZP_02066205.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483]
 gi|237714835|ref|ZP_04545316.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237720010|ref|ZP_04550491.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260174146|ref|ZP_05760558.1| putative ribonucleoside reductase [Bacteroides sp. D2]
 gi|262406893|ref|ZP_06083442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_22]
 gi|293368853|ref|ZP_06615457.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CMC 3f]
 gi|294643070|ref|ZP_06720909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CC 2a]
 gi|294807801|ref|ZP_06766591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides xylanisolvens SD CC 1b]
 gi|299147888|ref|ZP_07040951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_23]
 gi|315922411|ref|ZP_07918651.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109552|gb|EDO11297.1| hypothetical protein BACOVA_03200 [Bacteroides ovatus ATCC 8483]
 gi|229445160|gb|EEO50951.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229450562|gb|EEO56353.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262355596|gb|EEZ04687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_22]
 gi|292636158|gb|EFF54646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CMC 3f]
 gi|292641589|gb|EFF59768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides ovatus SD CC 2a]
 gi|294444998|gb|EFG13675.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298514071|gb|EFI37957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_23]
 gi|313696286|gb|EFS33121.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 847

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 140/714 (19%), Positives = 260/714 (36%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E++      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARVESKYPNALTAKELYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +         Q   LS+CF+  V    D    I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + +          
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKPYVQQYPIDSAQP-------- 243

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I A  LW+K++   +++  P + F D     S       
Sbjct: 244 ----------------TFTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD+D     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFDLFQKHVALAQRIMD 347

Query: 634 NVIDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMTKIDEDPENEEVKHAERALWEKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F        
Sbjct: 408 LGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNSEREQNNPFIQRLAAAD 467

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +                 L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 468 PK-----------------LYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 511 YKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPARRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ +        AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y
Sbjct: 564 -EEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  ST    D K    P   P        I  +
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPPTVVEVRPRILEA 676


>gi|123845657|sp|Q3KSU5|RIR1_EBVG RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase 140 kDa subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|64173255|gb|AAY41105.1| unknown [Human herpesvirus 4]
          Length = 826

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 165/808 (20%), Positives = 280/808 (34%), Gaps = 103/808 (12%)

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
           E +L + LI   +     +P    +  R L    R +  +  +   +       +    E
Sbjct: 8   EHELLSKLIDELKVKANADPEADVLAGRLL---HRLKAESVTHTVAEYLEVFSDKFYDEE 64

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +F  + +E             ++ +  +  L   R            YD Y       + 
Sbjct: 65  FFQMHRDELETRVSAFAQSPAYERIVSSGYLSALR-----------YYDTYLYVGRSGKQ 113

Query: 315 EMPQAFFMRVA----------------MGLALKETEKEKRAVEFY-NLLSSFHFMCSTPT 357
           E  Q F+MR+A                +  A  E E +    ++Y   L+S    CSTP 
Sbjct: 114 ESVQHFYMRLAGFCASTTCLYAGLRAALQRARPEIESDMEVFDYYFEHLTSQTVCCSTPF 173

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           +  +G  +  L+SC LTT             E  +       LG       G+G  + G 
Sbjct: 174 MRFAGVENSTLASCILTTP--------DLSSEWDVTQALYRHLGRYLFQRAGVGVGVTGA 225

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
               + +   +++ N      N G KR  +V AY+E WH  + +FL+ +     +  R  
Sbjct: 226 GQDGKHISLLMRMINSHVEYHNYGCKRPVSVAAYMEPWHSQIFKFLETKLPENHE--RCP 283

Query: 478 DMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            + T  ++P+LF K       + W LF P +  DL  LYG+EFE  Y            K
Sbjct: 284 GIFTGLFVPELFFKLFRDTPWSDWYLFDPKDAGDLERLYGEEFEREYYRLVTA-----GK 338

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
              ++S  +L   ++    + G P+I  K+ CN    +   G   ++       L  S +
Sbjct: 339 FCGRVSIKSLMFSIVNCAVKAGSPFILLKEACNAHFWRDLQGEAMNAANLCAEVLQPSRK 398

Query: 596 ETAVCNLGSINLLAH----------FANNQFDYDKLASTIRTAV---------------- 629
             A CNL +I L                +    + L +  R +V                
Sbjct: 399 SVATCNLANICLPRCLVNAPLAVRAQRADTQGDELLLALPRLSVTLPGEGAIGDGFSLAR 458

Query: 630 -RVLDNVIDINCHTIEKAKKSNHTHR---AIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            R                    +  R   ++GLG+ G       L   Y  P +  +  E
Sbjct: 459 LRDATQCATFVVACSILQGSPTYDSRDMASMGLGVQGLADVFADLGWQYTDPPSRSLNKE 518

Query: 686 SMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
             E + F A+  S  +    R  +  FK S +  G F                     R 
Sbjct: 519 IFEHMYFTALCTSSLIGLHTRKIFPGFKQSKYAGGWFHWHDWAGTD--------LSIPRE 570

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  L +R+   G+ NS  +A+ PT+  A + G S +  P Y N   K     +    N 
Sbjct: 571 IWSRLSERIVRDGLFNSQFIALMPTSGCAQVTGCSDAFYPFYANASTKVTNKEEALRPNR 630

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                ++   L D   ++ +    G +  +            TAF+ +   LI+ +  R 
Sbjct: 631 SFWRHVR---LDDREALNLV---GGRVSCLPEALRQRYLRFQTAFDYNQEDLIQMSRDRA 684

Query: 865 KWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920
            ++DQ+QS +L+L E        L  +  +++ +GLKT  YY R      +EK+   GV 
Sbjct: 685 PFVDQSQSHSLFLREEDAARASTLANLLVRSYELGLKTIMYYCR------IEKAADLGVM 738

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
               +  ++ P    +            
Sbjct: 739 ECKASAALSVPREEQNERSPAEQMLPRP 766


>gi|218288525|ref|ZP_03492802.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241182|gb|EED08357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 1065

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 121/631 (19%), Positives = 215/631 (34%), Gaps = 113/631 (17%)

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F  +  D    I   L +     +    +    + +R   +++ G NG+S G   +  + 
Sbjct: 309 FCLSPGDSRSTIARTLGDMWEAMRDGKRVSLVLSSLRPRYSYVRGVNGRSSGAYSWGLLY 368

Query: 432 NDT--------------------AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +                           QGG R+GA+   L   H D+ +F+  ++  G 
Sbjct: 369 DKGNQVFGEGFGPVGVGEIMSVGCQLTLQGGSRRGALMLILNDRHADLPKFIRAKQVDG- 427

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                   N +  + + FM+   +   W L     V   H    + F+  +  +  +   
Sbjct: 428 ---VITGANISVGVSEEFMQAKRRGESWQL---GFVPPSHR---EAFDGDFGRWLEEGKP 478

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E  V   ISA  LWR +    +++  P + F    N  S   +   + ++N C E  L 
Sbjct: 479 FE--VTETISAAKLWRDICESAWKSAEPGVVFLGRANAMSNSWYFNPLVATNPCGEQPLP 536

Query: 592 SSSEETAVCNLGSINLLAHFANNQFD---------------------------------- 617
                  +CNLG++ L       +                                    
Sbjct: 537 PY----GICNLGAVVLARFANGFRDSGVRTEFSDPKREAYVRSRLLEKFPADEAEFLLHH 592

Query: 618 --YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +++L  T R  +R  D VID   +  E+ +++  + R +GLG+MG    +    I Y 
Sbjct: 593 IRWEELELTTRRGIRFQDAVIDATYYPFEENRQNQMSERRVGLGIMGLHDLMLYCGIRYG 652

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E+V++ D  M  ++  A   SVELA+E G +  F    +         +  +A  R  
Sbjct: 653 SEESVKLIDVLMGLMAEWAYLESVELAKEYGPFPKFDAEKF----LQSGFMRHMAAERPH 708

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           +              + ++  G+RN   M IAPT T   + G S   +P Y   Y +++ 
Sbjct: 709 V-------------VEAIRKHGVRNVTTMTIAPTGTTGTMVGCSTGCEPYYAWSYFRNSR 755

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F                   A++   +    S        + L     TA E+ P  
Sbjct: 756 LGLFEE---------------HAAIVEQYRREHPS-------EESLPPYFVTAMELTPEE 793

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            +   +  Q+WID + S         + +    +Y  A+ +G K     R  S +  V  
Sbjct: 794 HVRVQAALQRWIDSSISKTCNAPNSYTVEDTVKLYDLAYELGCKGITIYRDGSRSEQVLS 853

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
                  G       T  ++       P+  
Sbjct: 854 LKKDDQAGDGEGAKDTAASAPVEKSAQPAQA 884



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 105/336 (31%), Gaps = 70/336 (20%)

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
            V  R+LL+ +R+E L                           ++     L     +D D
Sbjct: 26  IVADRYLLKDIRKEALAPGALV----------------VAVLDKKRAYHELARVKSVDRD 69

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKE 336
              +  +L   RD +   L +  +            +E  P+  + RVA G A    + E
Sbjct: 70  ADQVTVEL---RDGSLVDLPVSQV---------DVLLETSPRQMWRRVARGAAAVTRQPE 117

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLA 394
                FY L   + ++       + GT       +CF+   V  DL     +  +   + 
Sbjct: 118 VWEEAFYELQKGWRYVPGGRINASLGTGMQVTSYNCFVIPNVGPDLRDYAESFGQTLEIQ 177

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
             SGG+G + + +   G  I                             RK  +   L+ 
Sbjct: 178 ARSGGVGMNLSRIPPQGTLIP-----------------------VSTVSRKAELMLVLDA 214

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +FL+          R             F + V ++  W    PD   + +D  
Sbjct: 215 WHPDLVDFLETEYPHSTKLVRADAA---------FWRAVEEDDEWVFRFPDTSVEGYD-- 263

Query: 515 GKEFEIAYENYERQADRG-EIKVFRKISAVALWRKM 549
               E    + +    +G  ++   +I A  L  K+
Sbjct: 264 ----EKWAGDLDAWLRQGLPVEEHGRIRARELMEKI 295


>gi|289677032|ref|ZP_06497922.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae FF5]
          Length = 205

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/205 (57%), Positives = 144/205 (70%), Gaps = 17/205 (8%)

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           A APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DL
Sbjct: 3   ATAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 62

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           KY+DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKK
Sbjct: 63  KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 122

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS-- 942
           LD  YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P   
Sbjct: 123 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 180

Query: 943 -------------SCTSDTECEVCQ 954
                            + +CE CQ
Sbjct: 181 EAAPAGPAPVPKACAIDEPDCEACQ 205


>gi|162417878|ref|YP_001604552.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Yersinia pestis Angola]
 gi|162350850|gb|ABX84799.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Yersinia pestis Angola]
          Length = 548

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 145/532 (27%), Positives = 216/532 (40%), Gaps = 31/532 (5%)

Query: 189 MYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++DG++   L  AL+ S+  LI  E PNY +V AR  L K+R++                
Sbjct: 16  IFDGMTTCQLHEALVKSAADLISPETPNYLQVAARLNLFKIRKDAFGQYDYPN------- 68

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-- 305
               +  +    +  GV    L +     ++  L   +K +RD  F Y     L  +Y  
Sbjct: 69  ----FYNHIVSNVSRGVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLV 124

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLF 359
              + G+  E PQ  +M V M L            + +    FY++ S+F     TP + 
Sbjct: 125 QNRVTGAIYEGPQQLYMLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMA 184

Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              T   Q SSC L    D L GI  A            G+G  +  +R LG+ I     
Sbjct: 185 GVRTPTRQFSSCVLIEAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEA 244

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
              GVIPFLK       + +QGG R GA  A+   WH++VE  L L+ N G +  R   +
Sbjct: 245 THTGVIPFLKHFQTAVKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHL 304

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKV 536
           +    I  L  +R+  N   TLFSP +V  L+D +     +FE  Y  YE      E   
Sbjct: 305 DYGVMINRLMYRRLVHNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIR 360

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSE 595
            + I AV L+  ++     TG  +I   D  N           VH SNLC EITL +   
Sbjct: 361 KKSIPAVDLFSTLMQERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPL 420

Query: 596 ETAVCNLGSINLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                  G I L              D L      AV  LD+++D   + +  A+     
Sbjct: 421 AFTDDPNGEIALCTLSAFNLGAIRTLDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKA 480

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
            R++G+G+  F   L      Y+     ++  E+ E I ++ + AS  LA+E
Sbjct: 481 RRSLGIGVTNFAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEE 532


>gi|298479867|ref|ZP_06998067.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. D22]
 gi|298274257|gb|EFI15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. D22]
          Length = 847

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 140/714 (19%), Positives = 260/714 (36%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E++      A E Y+
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARVESKYPNALTAKELYD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +         Q   LS+CF+  V    D    I    +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGVDGAADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + +          
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMQAAVDEKPYVQQYPIDSAQPA------- 244

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I A  LW+K++   +++  P + F D     S       
Sbjct: 245 -----------------FTKEIDASTLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD+D     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFDLFQKHVALAQRIMD 347

Query: 634 NVIDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMTKIDEDPENEEVKHAERALWEKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +         F        
Sbjct: 408 LGLRYGTEEATEFSEKVHKTVALGAYRSSVEMAKERGAFEIYNSEREQNNPFIQRLAAAD 467

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +                 L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 468 PK-----------------LYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 511 YKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPARRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ +        AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y
Sbjct: 564 -EEIDELVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  ST    D K    P   P        I  +
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISTKSDKDKKEGLPPCKPPTVVEVRPRILEA 676


>gi|188995090|ref|YP_001929342.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277]
 gi|188594770|dbj|BAG33745.1| ribonucleotide reductase [Porphyromonas gingivalis ATCC 33277]
          Length = 850

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 142/738 (19%), Positives = 266/738 (36%), Gaps = 117/738 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           +      FD  Y A+   ++ D        ++   +Y L    G+  E  P     R+A 
Sbjct: 1   MSRKTYTFDEAYKASLAYFDGDEL----AAKVWVMKYALKDAQGNIYEKSPVDMHKRIAS 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---D 378
            +A  E +        E ++L   F ++    +         Q   LS+CF+  +    D
Sbjct: 57  EIARIEKKYPNPLSEKELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++    
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-E 175

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
                R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V +   
Sbjct: 176 VAQDGRRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVEGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +                          E K  ++I A  LW K++   +++  
Sbjct: 232 YKQQYPIDAK------------------------EPKWEKEIDARTLWGKIIHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVKNPFTSE 327

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKA------------------------KKS 649
             FD++   + +  A R++D++ID+    IE+                         ++ 
Sbjct: 328 ASFDFELFRNHVVLAQRIMDDIIDLEAEKIEQILSKIDSDPESEEVKTSERNLWHKIRRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      L  +   Y S EA + A+E  + ++  A S+SV +A+ERGA+ 
Sbjct: 388 TLAGRRTGVGITAEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F                   E  +        R     L + +K  G RN  C+ IAPT
Sbjct: 448 LFDAKR---------------EENNPFIAR--IREADPWLYEEMKQYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNEL 810
            + + +   S  I+P +  +Y +                        +F V +   V  +
Sbjct: 491 GSTSLMTQTSSGIEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWM 550

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +      +      KY +     I+ +        ATA ++D +  ++   R Q+W+D +
Sbjct: 551 RTNGYDPDR-----KYTN---EEIDDLVARSPYYKATANDVDWVAKVKMQGRIQQWVDHS 602

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S+ + L  + + + ++ +Y +AW  G K     R  S + V  +       K       
Sbjct: 603 ISVTINLPSDVTEELVNTLYVEAWKSGCKGCTVYRDGSRSGVLITDKPKKKDKKEEPAAL 662

Query: 930 DPNSSTHSLGIPSSCTSD 947
                +  +  P    ++
Sbjct: 663 QTTVQSMLISRPRELEAE 680


>gi|253583701|ref|ZP_04860899.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834273|gb|EES62836.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 754

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 144/663 (21%), Positives = 266/663 (40%), Gaps = 104/663 (15%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
             LG+ I   +Y    +G   E    +  RV+ G             E   ++++  F+ 
Sbjct: 11  NKLGIDIWEKKY--KYDG---ETFSEWLERVSGG-----------EQELKEMIANKEFIF 54

Query: 354 STPTLFNSGTRH----PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +   L N G          S+C++     D+L  IF   ++ A    Y GG G D + +R
Sbjct: 55  AGRILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYSYGGGCGVDISKLR 114

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ ++ +   + G I F+++ N T   +     R+GA+   ++  H DV EF+ ++  
Sbjct: 115 PRGSEVNNSAKHTTGSISFMELYNLTTD-IIGQKGRRGALMISIDVNHPDVSEFISIK-- 171

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D  +    N +  +   FMK V +                   G +F       E  
Sbjct: 172 --SDLNKIQKANISVRVDANFMKAVIE-------------------GMQF-----VTEFL 205

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCT 586
            +     V ++I A  L++++    ++   P I F D  +  +            +N C 
Sbjct: 206 VEDTGEVVTKEIDARKLFKELARQNWKFAEPGILFWDRISKWNLLSEDEEFEYAGTNPCA 265

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTIE 644
           E  L +       C LGS+ L       +F++D+LA  ++ +V+ L++V+D  +  H +E
Sbjct: 266 EEPLPAG----GSCLLGSLILPTFVEGKEFNFDRLAKVVQKSVKALNDVLDEGLPLHPLE 321

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++S    R IGLG++G    L  + + Y SPE++E  D+  + I  +A+ AS  LA++
Sbjct: 322 EQRESVRDWRQIGLGILGVGDLLIKIGMKYGSPESLEFCDKIAKVIVDNALKASALLAKD 381

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            GAY                       ++ E  +   S     E  + ++  G+RNS  +
Sbjct: 382 FGAYPK---------------YKADKVLKSEFLLENAS----IETLELIEKYGLRNSQLL 422

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSN--MSGD---FTVVNSFLVNELKQRDLWDEA 819
            IAPT +I  +   S  I+P++   YV+    + G+   + V        +++ ++ DE 
Sbjct: 423 TIAPTGSIGTMLETSTGIEPNFAFSYVRKTESLHGEDVFYKVFIPIAKKYMEENNITDE- 481

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878
                              +DL +   TA  ++P   I+     QK ID + S  + L +
Sbjct: 482 -------------------EDLPEYFVTAQSLNPYDRIKMQGVWQKRIDASISSTINLVN 522

Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS-ATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
           + S ++++ +Y +AW  GLK     R+      +   T K             P      
Sbjct: 523 KVSVEEVEKLYLEAWKNGLKGMTIYRAGCDREGILTVTPKAEKKIEELALPAIPRGELKP 582

Query: 938 LGI 940
           +  
Sbjct: 583 IAQ 585


>gi|310831444|ref|YP_003970087.1| putative ribonucleotide reductase large subunit precursor [Cafeteria
            roenbergensis virus BV-PW1]
 gi|309386628|gb|ADO67488.1| putative ribonucleotide reductase large subunit precursor [Cafeteria
            roenbergensis virus BV-PW1]
          Length = 1257

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 149/647 (23%), Positives = 242/647 (37%), Gaps = 149/647 (23%)

Query: 438  VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            V+  G+RKG+   YLE  H D+ +FL+LRKNTG +  R  D+  A W+ DLFM +V  N 
Sbjct: 627  VHNSGRRKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLFLALWVSDLFMNQVKLNN 686

Query: 498  GWTLFSP------DEVSDLHD---LYGKEFEIAYENYERQ-------------------- 528
             W LF P      ++V         +    E  Y    +                     
Sbjct: 687  DWYLFCPDKAPGLNDVYGDEYETLYWKYVSEEKYNKKIKARKLWEAIMTAQFETGSPYML 746

Query: 529  -----ADRGEIKVFRKISAVALWRKMLTMLFET----------GHPWITFKDPC--NIRS 571
                   +   K    I +  L  +++     T            P          N   
Sbjct: 747  YKDNINKKSNQKNIGIIRSSNLCAEIVEYSDSTETAACNLASIALPNFIKSKNVSDNGWI 806

Query: 572  PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---------------------- 609
                   ++   +   +   +   E  +  + S+ L                        
Sbjct: 807  VYSKPNCIYCKWIKQMLINKNIKFEEKLIEIDSVELYNLKQKIGKELITFPQVFLNNTLI 866

Query: 610  -------HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
                    +    +DY+KL +      + LD+VID N +  +++++SN  HR IGLG+ G
Sbjct: 867  GGMEETWIYFGKDYDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQG 926

Query: 663  FQSALHLLHIPY-----------------------------ASPEAVEIADESME----- 688
                L LL +PY                                E +++  +  E     
Sbjct: 927  LADTLALLRVPYASKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKK 986

Query: 689  ---------------------FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                                 +      S  ++  Q  GAYS+F+GS + +G        
Sbjct: 987  KPSSEFYDDNFECYPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEGKLQYHLWN 1046

Query: 728  LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                    L         WD L   +K  G RNS   A+ PTA+ + + G  +S +P   
Sbjct: 1047 RTPINISTL----IEGKSWDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTS 1102

Query: 788  NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            N+Y +  ++G+F VVN  L+N+L +   W   +   +   +GSI NI  +P+ +K I+ T
Sbjct: 1103 NIYTRRTLAGEFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQT 1161

Query: 848  AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906
            ++E+   ++I+  S R  +IDQ QS+NLY  +P  +KL      AW  GLKT  YYLRS+
Sbjct: 1162 SYEMKQKYIIDGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSK 1221

Query: 907  SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
             + +  K T+               N+S + +   +    D  C +C
Sbjct: 1222 PSANATKITV-------------LLNNSQNKINSQNMMEEDEGCVMC 1255



 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 154/340 (45%), Gaps = 34/340 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG   + +  ++   + +  +G   +++    ++ +T  ++Y G++  +L+    
Sbjct: 17  YVIKRDGRRENVHFDKITQRISKLLTGNMNKNIDIINIVKKTITSIYPGITTKELDNQSA 76

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           +    +     +YA +  R  +  L +E + T  +K +     +   +Y   +  +I++ 
Sbjct: 77  YQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEKMELIN--DNLHIYDSEWIEFIKKH 134

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                            L   + Y RD++F++ G++ +   Y   ++G  IE PQ  FMR
Sbjct: 135 R--------------NKLNKIIDYNRDYSFDFFGIKTMERTYITKLDGHLIERPQDVFMR 180

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           VA  +   +    ++ ++ YNL+S  +F  ++PTLFN+G +   L SCFL    D + GI
Sbjct: 181 VASLVHCGD---LQKTIDSYNLMSKKYFTHASPTLFNAGNKKGNLVSCFLLGTEDSMTGI 237

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
                + A ++K+ GG+G   + VR  G+ I  TNG S G++P L+V N     VNQ   
Sbjct: 238 SKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGHSDGIVPMLQVYNSICRYVNQ--- 294

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
                      +  D   F +    + ++ +    + T++
Sbjct: 295 ----------CFTPDTPIFTNDGFVSIENIKPHMKVMTSD 324


>gi|34540859|ref|NP_905338.1| ribonucleotide reductase [Porphyromonas gingivalis W83]
 gi|34397173|gb|AAQ66237.1| ribonucleotide reductase [Porphyromonas gingivalis W83]
          Length = 850

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 142/738 (19%), Positives = 266/738 (36%), Gaps = 117/738 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           +      FD  Y A+   ++ D        ++   +Y L    G+  E  P     R+A 
Sbjct: 1   MSRKTYTFDEAYKASLAYFDGDEL----AAKVWVMKYALKDAQGNIYEKSPMDMHKRIAS 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---D 378
            +A  E +        E ++L   F ++    +         Q   LS+CF+  +    D
Sbjct: 57  EIARIEKKYPNPLSEKELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDAD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++    
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-E 175

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
                R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V +   
Sbjct: 176 VAQDGRRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVKIDDEFMRAVVEGKP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +    P +                          E K  ++I A  LW K++   +++  
Sbjct: 232 YKQQYPIDAK------------------------EPKWEKEIDARTLWGKIIHNAWKSAE 267

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615
           P + F D     S       +    + T             C L +INL ++  N     
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVKNPFTSE 327

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKA------------------------KKS 649
             FD++   + +  A R++D++ID+    IE+                         ++ 
Sbjct: 328 ASFDFELFRNHVVLAQRIMDDIIDLEAEKIEQILSKIASDPESEEVKTSERNLWHKIRRK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      L  +   Y S EA + A+E  + ++  A S+SV +A+ERGA+ 
Sbjct: 388 TLAGRRTGVGITAEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F                   E  +        R     L + +K  G RN  C+ IAPT
Sbjct: 448 LFDAKR---------------EENNPFIAR--IREADPWLYEEMKQYGRRNIACLTIAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNEL 810
            + + +   S  I+P +  +Y +                        +F V +   V  +
Sbjct: 491 GSTSLMTQTSSGIEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWM 550

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +      +      KY +     I+ +        ATA ++D +  ++   R Q+W+D +
Sbjct: 551 RTNGYDPDR-----KYTN---EEIDDLVARSPYYKATANDVDWVAKVKMQGRIQQWVDHS 602

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S+ + L  + + + ++ +Y +AW  G K     R  S + V  +       K       
Sbjct: 603 ISVTINLPSDVTEELVNTLYVEAWKSGCKGCTVYRDGSRSGVLITDKPKKKDKKEEPAAL 662

Query: 930 DPNSSTHSLGIPSSCTSD 947
                +  +  P    ++
Sbjct: 663 QTTVQSMLISRPRELEAE 680


>gi|167754049|ref|ZP_02426176.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216]
 gi|167658674|gb|EDS02804.1| hypothetical protein ALIPUT_02337 [Alistipes putredinis DSM 17216]
          Length = 848

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 141/705 (20%), Positives = 253/705 (35%), Gaps = 107/705 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
           F  + L   +   +Y L  + G   E  P+    R+A  +   E          E + LL
Sbjct: 26  FDGDDLAATVWVSKYALKDSYGHIYEKTPRDMHERIAAEIERIEKKYPNPMNRQEVFELL 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLT---TVPDDLYGIFGALQENAMLAKYSGGL 400
             F ++            + Q   LS+CF+       D   GIF   +E   L K  GG+
Sbjct: 86  DHFRYIIPQGGPMTGIGNNFQAASLSNCFVIGHKNPADSYGGIFRMDEEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   L   H D E
Sbjct: 146 GHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLTLSIKHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D + +T     +    N +  I D FM+       +    P                
Sbjct: 205 RFIDAKVDTS----KVTGANVSVKIDDEFMRAALAGKKYHQQFP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                       +    + I A  LW K++   +++  P + F D               
Sbjct: 245 --------IHSDKPLYQQDIDAKKLWDKIIHNAWKSAEPGVMFWDTIIRESIPDCYADEG 296

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRV 631
               ++N C EI L         C L +INLL++          F+++K    +  A+R+
Sbjct: 297 FTTVATNPCGEIPLCPY----DSCRLLAINLLSYVDKPFTKEASFNFEKFKQHVEKAMRM 352

Query: 632 LDNVIDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+                             +K +      R  GLG+      L
Sbjct: 353 MDDIIDLELEKIELIINKIAADPEDEDIRRVELELWKKIRTMARKGRRTGLGITAEGDML 412

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y +PEA   A +  + ++  A  ASV++A ERGA+  F     ++         
Sbjct: 413 AALGLRYGTPEATAFAVKVQKTLALEAYRASVKMAAERGAFEIFDARKEEKNPMIGRI-- 470

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                          R    EL   +   G RN   + IAPT T + +   +  I+P ++
Sbjct: 471 ---------------READPELYAEMVKHGRRNIAMLTIAPTGTTSLMSQTTSGIEPVFR 515

Query: 788 NLYVKSNMSGDFTVVNSF-LVNEL----KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            +Y +               V+++    ++ +++    +  L+ +      ++ I DD  
Sbjct: 516 PVYKRRRKINPSDQDAKVAFVDDMGEKFEEYNVYHHNFVKWLEANGYDTSKLQDISDDEL 575

Query: 843 KIHA--------TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                       TA +ID +  ++     QKW+D + S+ + L ++ S   +  +YR AW
Sbjct: 576 NRWVAASPYHGATANDIDWVAKVKMQGEIQKWVDHSISVTVNLPNDVSEALVADVYRTAW 635

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
             G K     R      V     K    + N   +     S  + 
Sbjct: 636 ECGCKGVTVYRDGCREGVLIDKKKKAAKEENGQTILKRPKSIPAD 680


>gi|255282089|ref|ZP_05346644.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bryantella formatexigens DSM 14469]
 gi|255267408|gb|EET60613.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bryantella formatexigens DSM 14469]
          Length = 757

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 130/565 (23%), Positives = 227/565 (40%), Gaps = 78/565 (13%)

Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             S+C++ T P D++  IF   ++ A    Y GG G D + +   GA IH    ++ G +
Sbjct: 72  TYSNCYVITPPKDEIEDIFECAKKLARTYSYGGGCGIDISGLAPRGARIHNAAKETSGAV 131

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F+++      A+     R+GA+   +++ H DVEEF++L+     D  +    N +  I
Sbjct: 132 SFMELY-SMVTALIGQNGRRGALMISIDSSHPDVEEFINLKT----DLEKVTKANISVRI 186

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            + FMK V +N  + L    EV+                          ++ + + A  L
Sbjct: 187 HEDFMKAVKENGEYLLSFTREVTGE------------------------RIEKTVQAKEL 222

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLG 603
           + K+    ++   P   F D     +   +         N C E  L +       C LG
Sbjct: 223 FHKIALTNWDYAEPGALFWDRITGWNLLSNTKEFSYAGVNPCAEEPLPAG----GSCLLG 278

Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAI 656
           SINL             FD +     ++ +VR L+ V++  +  H +++ ++S    R I
Sbjct: 279 SINLSEFVQYPFTEAATFDMEGFRKCVQASVRALNEVLEEGLPLHPLQEQRESVAKWRQI 338

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG   AL  L + Y   +AV + D+    ++  AI+ S ELA+E+GA+ +      
Sbjct: 339 GLGIMGLADALLKLGLTYGEQDAVAMCDKIGFAMADAAIATSAELAKEQGAFPACNAEEI 398

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                                         ++ ++ V+  G+RNS  + IAPT T++ + 
Sbjct: 399 M-------------------ETPYFLANTSEKTRELVRKYGLRNSQLLTIAPTGTLSTML 439

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G+S  I+P Y N Y +   S   T V            ++ + +   +K H  +  N   
Sbjct: 440 GISGGIEPVYANSYQRKTESLHGTDV---------YYKVYTKIVDEYMKQHGITEENA-- 488

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
               L     TA  +D    I+  S  Q  ID + S  + +    + ++ + +Y  AW  
Sbjct: 489 ----LPGYFVTAMMLDYHQRIDMQSIWQTHIDASISSTVNVPNSFTVEETESLYLYAWER 544

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           GLK     R     +   +T     
Sbjct: 545 GLKGITIYRDGCKRTGVLTTNDKKK 569


>gi|258511853|ref|YP_003185287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478579|gb|ACV58898.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 1065

 Score =  259 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 121/630 (19%), Positives = 215/630 (34%), Gaps = 113/630 (17%)

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           F  +  D    I   L +     +    +    + +R   +++ G NG+S G   +  + 
Sbjct: 309 FCLSPGDSRSTIARTLGDMWEAMRDGKRVSLVLSSLRPRYSYVRGVNGRSSGAYSWGLLY 368

Query: 432 NDT--------------------AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +                           QGG R+GA+   L   H D+ +F+  ++  G 
Sbjct: 369 DKGNQVFGEGFGPVGVGEIMSVGCQLTLQGGSRRGALMLILNDRHADLPKFIRAKQVDG- 427

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                   N +  + + FM+   +   W L     V   H    + F+  +  +  +   
Sbjct: 428 ---VITGANISVGVSEEFMQAKRRGESWQL---GFVPPSHR---EAFDGDFGRWLEEGKP 478

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            E  V   ISA  LWR +    +++  P + F    N  S   +   + ++N C E  L 
Sbjct: 479 FE--VTETISAAKLWRDICESAWKSAEPGVVFLGRANAMSNSWYFNPLVATNPCGEQPLP 536

Query: 592 SSSEETAVCNLGSINLLAHFANNQFD---------------------------------- 617
                  +CNLG++ L       +                                    
Sbjct: 537 PY----GICNLGAVVLARFANGFRDSGVRTEFSDPEREAYVRSLLLEKFPADEAEFLLHH 592

Query: 618 --YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
             +++L  T R  +R  D VID   +  E+ +++  + R +GLG+MG    +    I Y 
Sbjct: 593 IRWEELELTTRRGIRFQDAVIDATYYPFEENRQNQMSERRVGLGIMGLHDLMLYCGIRYG 652

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E+V++ D  M  ++  A   SVELA+E G +  F    +         +  +A  R  
Sbjct: 653 SEESVKLIDVLMGLMAEWAYLESVELAKEYGPFPKFDAEKF----LQSGFMRHMAAERPH 708

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
           +              + ++  G+RN   M IAPT T   + G S   +P Y   Y +++ 
Sbjct: 709 V-------------VEAIRKHGVRNVTTMTIAPTGTTGTMVGCSTGCEPYYAWSYFRNSR 755

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
            G F                   A++   +    S        + L     TA E+ P  
Sbjct: 756 LGLFEE---------------HAAIVEQYRREHPS-------EESLPPYFVTAMELTPEE 793

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913
            +   +  Q+WID + S         + +    +Y  A+ +G K     R  S +  V  
Sbjct: 794 HVRVQAALQRWIDSSISKTCNAPHSYTVEDTVKLYDLAYELGCKGITIYRDGSRSEQVLS 853

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                  G       T  ++       P+ 
Sbjct: 854 LKKDDQAGDGEGAKDTAASAPVEKSAQPAQ 883



 Score = 69.9 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 105/336 (31%), Gaps = 70/336 (20%)

Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277
            V  R+LL+ +R+E L                           ++     L     +D D
Sbjct: 26  IVADRYLLKDIRKEALAPGALV----------------VAVLDKKRAYHELARVKAVDRD 69

Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKE 336
              +  +L   RD +   L +  +            +E  P+  + RVA G A    + E
Sbjct: 70  ADQVTVEL---RDGSIVDLPVSQV---------DVLLETSPRQMWRRVARGAAAVTRQPE 117

Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLA 394
                FY L   + ++       + GT       +CF+   V  DL     +  +   + 
Sbjct: 118 VWEEAFYELQKGWRYVPGGRINASLGTGMQVTSYNCFVIPNVGPDLRDYAESFGQTLEIQ 177

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
             SGG+G + + +   G  I                             RK  +   L+ 
Sbjct: 178 ARSGGVGMNLSRIPPQGTLIP-----------------------VSTASRKAELMLVLDA 214

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           WH D+ +FL+          R             F + V ++  W    PD   + +D  
Sbjct: 215 WHPDLVDFLETEYPHSTKLVRADAA---------FWRAVEEDDEWVFRFPDTSVEGYD-- 263

Query: 515 GKEFEIAYENYERQADRG-EIKVFRKISAVALWRKM 549
               E    + +    +G  ++   +I A  L  K+
Sbjct: 264 ----EKWAGDLDAWLRQGLPVEEHGRIRARELMEKI 295


>gi|330941360|gb|EGH44212.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 202

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 116/203 (57%), Positives = 143/203 (70%), Gaps = 17/203 (8%)

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD  MI+DLKY
Sbjct: 2   APTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKY 61

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
           +DGS+  IERIP +LK+++ATAFE+D  W++++ASRRQKWIDQAQSLNLY+   SGKKLD
Sbjct: 62  YDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLD 121

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---- 942
             YR AW  GLKTTYYLR+ +ATS EKST+    GKLNAV          ++  P     
Sbjct: 122 VTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEA 179

Query: 943 -----------SCTSDTECEVCQ 954
                          + +CE CQ
Sbjct: 180 APAGPAPVPKACAIDEPDCEACQ 202


>gi|332883039|gb|EGK03323.1| hypothetical protein HMPREF9456_01960 [Dysgonomonas mossii DSM
           22836]
          Length = 847

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 144/707 (20%), Positives = 268/707 (37%), Gaps = 105/707 (14%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAM 326
           + + +  FD  Y A    +  D        ++  ++Y L    G+  E  P+    R+A 
Sbjct: 1   MAQKVYTFDEAYRAALDYFNGDEL----AAKVWVNKYALKDATGNIYEQSPEDMHWRLAN 56

Query: 327 GLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---D 378
            +   E++ +      E Y+L   F ++    +         Q   LS+CF+  +    D
Sbjct: 57  EIGRIESKYKNGLTTQELYDLFDQFKYIVPQGSPMTGIGNDYQIASLSNCFVIGMEGSSD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++    
Sbjct: 117 SYGAIIRVDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-E 175

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
                R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V     
Sbjct: 176 VAQDGRRGALMLSVSIKHPDSESFIDAKMIEG----KVTGANVSVRIDDAFMQAVVDGTP 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P +  +                            +   A  LW+K++   +++  
Sbjct: 232 YTQQYPIDSDNPTT------------------------VKDTDATELWKKIVHNAWKSAE 267

Query: 559 PWITFKDPCNI----RSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFAN 613
           P + F D                   S+N C EI L           NL S  +     +
Sbjct: 268 PGVLFWDTIIRESVPDCYADLGFKTISTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKED 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDIN------------------------CHTIEKAKKS 649
             FD++     +  A R++D++ID+                          H  EK +K 
Sbjct: 328 AYFDFELFKKHVGLAQRIMDDIIDLETEKIDKILNKIEIDPENEEVKWPERHLWEKIRKK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      +  + + Y + EA   A+E    ++  A  ASVELA+ERGA+ 
Sbjct: 388 TLQGRRTGVGITAEGDMIAAMGLRYGTEEATTFAEEVHRTLAVAAYRASVELAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F                 +   R+   +NR +     +L K ++  G RN  C+ +APT
Sbjct: 448 IFD----------------IERERNNPFINRLA-EVDPKLYKDMEKYGRRNIACLTVAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            T + +   +  I+P +  +Y +      +   V    V+E    D W+E ++   K+  
Sbjct: 491 GTTSLMTQSTSGIEPVFLPVYKRRRKVNPNDKEVRVDFVDE--NGDSWEEYVVFHHKFVT 548

Query: 829 G------------SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                        +   I+++  +     AT+ ++D +  ++   R QKW+D + S+ + 
Sbjct: 549 WMESKGYPAAKRYTNEEIDKMIAESPYYKATSNDVDWLQKVKMQGRIQKWVDHSISVTIN 608

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           L  + S   ++ +Y +AW  G K     R  S   V  +     + +
Sbjct: 609 LPSDVSEDLVNQLYIEAWKSGCKGCTVYRDGSRAGVLIANDSKKEEE 655


>gi|282851732|ref|ZP_06261096.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 224-1]
 gi|282557135|gb|EFB62733.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus
           gasseri 224-1]
          Length = 505

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 137/528 (25%), Positives = 233/528 (44%), Gaps = 63/528 (11%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
               S G+IP +K+  D+    NQ G+R+GA   YL   H  + +FLD ++   D++ R 
Sbjct: 1   MKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRI 60

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             ++    IPD+  +   +N    LFSP    D+   YGK         E Q       +
Sbjct: 61  KSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKEYQNILNNPCI 117

Query: 537 FRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
            +  ISA   ++ +  + FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++  
Sbjct: 118 KKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPS 177

Query: 596 ET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHT 642
                           CNLGS+N+ A   +     DKL   +  +V+ L+ V    +   
Sbjct: 178 TYNKDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDC 233

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
               +K N  +RAIGLG M     L   HI Y SPEAVE        I++HA   S +LA
Sbjct: 234 APSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLA 293

Query: 703 QERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVK 754
           +  GA+  FK S +  G +    I          + E+  +  +   ++  W+EL  ++K
Sbjct: 294 ETYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIK 353

Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814
             G+ N+N +A+APT +I+ +   + S+ P    +  +         V ++         
Sbjct: 354 KTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------- 404

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSL 873
                                +I  D  + +   A+E+ P  +I+  +  QK++DQ+ SL
Sbjct: 405 ---------------------KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISL 443

Query: 874 NLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
            L++++  + + L+  Y  A+     + YY+R R       E  T   
Sbjct: 444 TLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 491


>gi|261881174|ref|ZP_06007601.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM
           17361]
 gi|270332043|gb|EFA42829.1| ribonucleoside-diphosphate reductase [Prevotella bergensis DSM
           17361]
          Length = 857

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 141/715 (19%), Positives = 271/715 (37%), Gaps = 101/715 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A + + LL
Sbjct: 20  FDGDELAARVWVNKYAMKDSFGNIYEKSPEQMHWRIAGEIARIEQKYKNPLSAEDVFGLL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFRYIIPAGSPMTGIGNNQQVASLSNCFVIGLDGDADSYGAIMRVDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 140 GHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVGIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+    +  +    P +              
Sbjct: 199 AFIDAKMTEG----KVTGANVSVKIDDAFMEAAVGDKFYMQQFPLDAKKPM--------- 245

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                          V ++ISA  LW K++   +++  P + F D     S       + 
Sbjct: 246 ---------------VEKEISARKLWEKIVHNAWQSAEPGVLFWDTIIRESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L S+NL ++  N       FD++K A  ++ A R++D++
Sbjct: 291 FRTVSTNPCGEIPLCPYDSCRLLSLNLYSYVKNPFTKEASFDFEKFAKHVQLAQRIMDDI 350

Query: 636 IDINC------------------------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK ++ +   R  G+G+      +  + 
Sbjct: 351 VDLEMEKINMILDKVGTDPQNEEVKCTERHLWEKIQRKSGMGRRTGVGITAEGDMIAAMG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S EA E + +  + ++ +A  +SV +A ERGA+  +                    
Sbjct: 411 LRYGSEEATEFSVKVHKTLALNAYRSSVTMAAERGAFEIYDA----------------ER 454

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   +NR  +    +L K +   G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 455 EKNNPFVNR-LKEADPQLYKDMVKHGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 513

Query: 792 KSNMSG-DFTVVNSFLVNE----------LKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           +        T V+   V+E            ++ L    +         S   I+ +   
Sbjct: 514 RRRKVNPSDTDVHVDFVDEVGDSFEEYIVYHKKFLTWMEVNGIDTNKKYSQEEIDELVAR 573

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
                ATA ++D +  +      QKW+D + S+ + L        ++ +Y +AW  G K 
Sbjct: 574 SPYYKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPGNVDEALVNKLYVEAWRSGCKG 633

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT---ECE 951
               R  S + V  S +   D K           +  +L  P    +     +C+
Sbjct: 634 CTIYRDGSRSGVMVS-VSKKDKKKEERHEAPEPITAPTLNHPMVQETRPKVLDCD 687


>gi|198275618|ref|ZP_03208149.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135]
 gi|198271247|gb|EDY95517.1| hypothetical protein BACPLE_01787 [Bacteroides plebeius DSM 17135]
          Length = 883

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 141/750 (18%), Positives = 277/750 (36%), Gaps = 118/750 (15%)

Query: 254 EYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-G 311
             F  +I+   +    + +    +D  Y A+   ++ D        ++  ++Y +  + G
Sbjct: 21  YTFTIFIDNKLIHIITVEKKTYSYDEAYNASLEYFKGDEL----AARVWVNKYAVKDSFG 76

Query: 312 SRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ- 367
           +  E  P+    R+A  +A  E        A E ++LL  F ++    +         Q 
Sbjct: 77  NIYEKSPEDMHWRIANEVARIEAKYPNAISAQELFDLLDHFKYIVPQGSPMTGIGNDYQI 136

Query: 368 --LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
             LS+CF+  +    D    I    +E   L K  GG+G+D + +R  G+ +  +   S 
Sbjct: 137 ASLSNCFVIGLDGSADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTST 196

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           G++PF++  +++         R+GA+   +   H D E F+D +   G    +    N +
Sbjct: 197 GLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVS 251

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+   +   +T   P +  +                          V ++I A
Sbjct: 252 VKLDDEFMQAAVEGKPYTQQYPIDSPNPM------------------------VSKEIDA 287

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
            ALW+K++   +++  P + F D     S       +    + T             C L
Sbjct: 288 SALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRL 347

Query: 603 GSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDIN------------------ 639
            +INL ++  N       FD++     +  A R++D++ID+                   
Sbjct: 348 LAINLYSYVVNPFTPEAYFDFELFKKHVALAQRIMDDIIDLELEKIECILEKIDSDPESM 407

Query: 640 ------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
                  H  EK    +   R  G+G+      L  + + Y + EA E +++  + I+  
Sbjct: 408 EVKGSERHLWEKIYHKSGLGRRTGVGITAEGDMLAAMGLRYGTEEATEFSEKVHKTIALE 467

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
           A  +SV +A+ERGA+  +                     ++   +NR  +    EL + +
Sbjct: 468 AYRSSVNMAKERGAFEIYDA----------------EREKNNPFINR-LKDADPELYEEM 510

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS----------------- 796
           +  G RN  C+ IAPT T + +   +  I+P +  +Y +                     
Sbjct: 511 RKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDANVHVDFVDETGD 570

Query: 797 --GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
              ++ V +   +  +K      +   +           I+ + +      AT+ ++D +
Sbjct: 571 AFEEYVVFHHKFLTWMKINGYDPDKRYTQ--------EEIDELVEKSPYYKATSNDVDWL 622

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
             ++   R QKW+D + S+ + L +  S   ++ +Y +AW  G K     R  S   V  
Sbjct: 623 MKVKMQGRIQKWVDHSISVTINLPNNVSEDLVNQLYVEAWRSGCKGCTVYRDGSRAGVLI 682

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           ST K    +        P        +  +
Sbjct: 683 STKKKDKKEEEECRCKPPQVVEVRPKVLEA 712


>gi|329960252|ref|ZP_08298694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides fluxus YIT 12057]
 gi|328532925|gb|EGF59702.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides fluxus YIT 12057]
          Length = 845

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 140/715 (19%), Positives = 269/715 (37%), Gaps = 115/715 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + E +N
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNGLSSEELFN 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+   +   +T   P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLADSFMQAAIEGKPYTQQYPIDAEVPV------- 244

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I A ALW+K++   +++  P + F D     S       
Sbjct: 245 -----------------FKKEIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD++     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFELFEKHVSLAQRIMD 347

Query: 634 NVIDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMEKIDSDPECEDVKHTERILWQKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E ++   + ++ +A  +SVE+A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFSERVHKAVALNAYRSSVEMAKERGAFEIYD----------------T 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R    EL + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPELYEEMKKFGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++ +  ++ A     +  D  
Sbjct: 511 YKRRRKVNPNDTNVHVDFIDETGDAFEEYIVFHPKFVTWMEAQG-YNPAKRYTQEEVDAM 569

Query: 831 IGNIERIPDDLKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
           +             +  T+ ++D +  ++   R QKW+D + S+ + L ++     ++ +
Sbjct: 570 VAKSP--------YYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRL 621

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           Y +AW  G K     R  S + V  ST       L          +   +     
Sbjct: 622 YIEAWKSGCKGCTVYRDGSRSGVLISTKSDKKEGLPPCKPPTVVETRPKVLDADV 676


>gi|331082220|ref|ZP_08331347.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403014|gb|EGG82579.1| hypothetical protein HMPREF0992_00271 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 755

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 125/565 (22%), Positives = 227/565 (40%), Gaps = 78/565 (13%)

Query: 367 QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             S+C++     D++  IF   ++ A    Y GG G D + +   GA I+    ++ G +
Sbjct: 72  TYSNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKINNAAKETSGAV 131

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F+++      ++     R+GA+   ++  H DV EF++L+     D  + +  N +  I
Sbjct: 132 SFMELY-SLVTSLIGQNGRRGALMISIDCSHPDVPEFIELKT----DLEKVNTANISVRI 186

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            + FM+ V +N  + L    E +                           + R ++A  L
Sbjct: 187 HEDFMEAVKKNEEYCLHYTREETGQV------------------------IERMVNAREL 222

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLG 603
           + ++    ++   P   F D     +   +         N C E  L +       C LG
Sbjct: 223 FHRITETNWDYAEPGALFWDRITGWNLLSNTKEFSYAGVNPCAEEPLPAG----GSCLLG 278

Query: 604 SINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAI 656
           SINL A   N       FD+++    ++ +VR L+ V++  +  H + + ++S    R I
Sbjct: 279 SINLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQRESVSQWRQI 338

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG   AL  L + Y   +AV + D     ++  AI+AS  LA+E GA+        
Sbjct: 339 GLGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELGAFPKC----- 393

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                         +V + +          +  K+ V+  G+RNS  + IAPT T++ + 
Sbjct: 394 --------------KVEEIMETPYFLANTTEGTKELVRKYGLRNSQLLTIAPTGTLSTML 439

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G+S  I+P Y N Y +   S         L  E     ++ + +   ++ H  S   +  
Sbjct: 440 GISGGIEPIYANYYERKTES---------LHGEDVYYKVYTKIVKDFMEEHKVSDDRL-- 488

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
               L     TA  +D    I+  S  Q+ ID + S  + +    + ++ + +Y  A+  
Sbjct: 489 ----LPDYFVTAMTLDYHQRIDMQSIWQRHIDASISSTVNVPSGFTVEETENLYLYAFEQ 544

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           GLK     R         +T +   
Sbjct: 545 GLKGITIFRDGCKRVGILNTKETKK 569


>gi|325297273|ref|YP_004257190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides salanitronis DSM 18170]
 gi|324316826|gb|ADY34717.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides salanitronis DSM 18170]
          Length = 869

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 137/693 (19%), Positives = 254/693 (36%), Gaps = 114/693 (16%)

Query: 282 ANDLKYERDF-AFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK- 337
                   D+   + L  ++  ++Y +  + G   E  P+    R+A  +A  E +    
Sbjct: 31  DEAYDASLDYFKGDELAARVWVNKYAVKDSFGHIYEKSPEDMHWRIANEVARIEAKYPNG 90

Query: 338 -RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQEN 390
             A E + L   F ++    +         Q   LS+CF+  +    D    I    +E 
Sbjct: 91  LSAQELFGLFDHFKYIIPQGSPMTGIGNDYQIASLSNCFVIGLDGSADSYGAIIRIDEEQ 150

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+  
Sbjct: 151 VQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMM 209

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E F+D +   G    +    N +  + D FM+   +N  +    P      
Sbjct: 210 TVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMEAAVENRPYVQQFPIGSPHP 265

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                    V ++I A ALW+K++   +++  P + F D     
Sbjct: 266 M------------------------VKKEIDASALWKKIVHNAWKSAEPGVLFWDTILRE 301

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTI 625
           S       +    + T             C L +INL ++  N       FD+D     +
Sbjct: 302 SVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTPEAYFDFDLFKKHV 361

Query: 626 RTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLM 661
             A R++D++ID+                          H  EK  + +   R  G+G+ 
Sbjct: 362 ALAQRIMDDIIDLELEKIEKIMEKIDSDPESEEVKGTERHLWEKIYRKSGMGRRTGVGIT 421

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  L + Y + EA E A+   + I+  A  +SV +A+ERGA+  +          
Sbjct: 422 AEGDMLAALGLRYGTEEATEFAERVQKTIALEAYRSSVVMAKERGAFEIYD--------- 472

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                      +D   +NR  R     L + +K  G RN  C+ IAPT T + +   +  
Sbjct: 473 -------TEREKDNPFVNR-LREADPGLYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSG 524

Query: 782 IDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMIS 822
           I+P +  +Y +                        ++ V +   +  +K      +   +
Sbjct: 525 IEPVFMPVYKRRRKVNPNDENVRIDFVDETGDAFEEYLVFHHKFLAWMKVNGYDPDKHYT 584

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881
                      I+ +        AT+ ++D +  ++   R QKW+D + S+ + L +   
Sbjct: 585 Q--------EEIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNNVD 636

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            + ++ +Y +AW  G K     R  S   V  S
Sbjct: 637 EELVNRLYVEAWRSGCKGCTVYRDGSRAGVLLS 669


>gi|332664296|ref|YP_004447084.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333110|gb|AEE50211.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 865

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 135/716 (18%), Positives = 260/716 (36%), Gaps = 109/716 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLL 346
           F  + L   +  ++Y L  + G+  E  P     R+A  +A  E          E Y L+
Sbjct: 28  FNGDNLAANVWVNKYALKDSFGNIYEKTPDDMHRRIAKEIARIESKYPNPLNEEEAYELV 87

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +F ++    +       + Q   LS+CF+     D   GI    +E   L K  GG+G+
Sbjct: 88  RNFKYIVPQGSPMAGIGNNMQVSSLSNCFVIGNFADSYGGIIRTDEEQVQLMKRRGGVGH 147

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           D + +R  G+ +  +   S G++PF++  +++         R+GA+   + + H D E+F
Sbjct: 148 DLSHIRPKGSPVMNSALSSTGIVPFMERYSNSTR-EVAQDGRRGALMLTVSSKHPDAEDF 206

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +D +     ++ +    N +  I D FM+       +    P +  +             
Sbjct: 207 IDAKL----EQGKVTGANVSVRIDDDFMRAAIGGTPYQQQFPVDAKNP------------ 250

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       KV ++I A ALW K++   +++  P + F D     S       +   
Sbjct: 251 ------------KVTKEIDASALWDKIIYNAWKSAEPGVLFWDTVLRESVPDCYADLGYR 298

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVID 637
            + T             C L ++NL ++          F+++K A   + A R +D++ID
Sbjct: 299 TISTNPCGEIPLSPYDSCRLLALNLYSYVEQPFTPEAFFNFEKFAKHAQLAQRFMDDIID 358

Query: 638 INCHTIEKAKKSNHTH------------------------RAIGLGLMGFQSALHLLHIP 673
           +    +++  +                             R  G+G+      L  L   
Sbjct: 359 MELEKVDRIIEKIEKDPEARDLKEVEYELWNKVRTACIGGRRTGVGITAEGDTLAALGFR 418

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S E +E+A +  + ++ +A  ASV++A++RGA+  F                   E +
Sbjct: 419 YGSDEGIEMAVKIHQSLAVNAYRASVDMARDRGAFPIFDSKR---------------EEQ 463

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
           +       S      L   ++  G RN   + IAPT T + +   +  I+P +   Y + 
Sbjct: 464 NPFIQRLAS--VDPTLYADMQRYGRRNIALLTIAPTGTTSLMTQTTSGIEPVFMVSYKRR 521

Query: 794 NMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
                                  ++ V +   ++ L+Q     + +          +  I
Sbjct: 522 RKVNPNDKEVKVAFIDEVGDHWEEYNVFHHKFLDWLQQNGYQVDEVTKMNAEE---LQPI 578

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
                  K    TA ++D +  ++     QKW+D + S+ + +  + S   +  IY+ AW
Sbjct: 579 IEKSPYHKA---TANDVDWVQKVKMQGAIQKWVDHSISVTVNVPEDTSVDMVKRIYQTAW 635

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
            +G K     R  S + V  S  K              N + H+    +      +
Sbjct: 636 EVGCKGCTIYRDGSRSGVLISNEKKDKKGKKGANGQSSNGNGHAKFGENHYPERPD 691


>gi|118197661|ref|YP_874054.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40]
 gi|116266352|gb|ABJ91435.1| ribonucleotide reductase alpha subunit [Thermus phage phiYS40]
          Length = 797

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 157/820 (19%), Positives = 298/820 (36%), Gaps = 130/820 (15%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           KE  Y     R L +K++      V    +   + E +    +     +   ++      
Sbjct: 8   KEELYGSEALRVLFDKIKSNFEEDVDTFEKFLEYGEPENALTKEEINNVFTELEK----L 63

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQIL-----YDRYFLHINGSRIE----MPQAFFM 322
            +++     L++  K +++   +   +Q +       +Y L    ++ E     P   F+
Sbjct: 64  GLIEEIKDELSSFYKVKKEDLIDGFFVQNISSEIYKQKYQLKDGKNKNELVDLTPYHTFV 123

Query: 323 RVAMGLALK--------ETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-----------GT 363
           RVA+ +AL         E         F +   SF ++ +T     +             
Sbjct: 124 RVALAVALVNARYSKRLEKYGLDAFKTFVDDFLSFFYILATGRSTGAGRVMSNAGSKLYK 183

Query: 364 RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
            +  L +C +   +PD ++GI   L E ++  K   G G D++ +R  GA +HG   ++ 
Sbjct: 184 TYTTLINCTVMRQIPDSMHGIMETLTEASLTLKAGAGTGYDFSSIRPKGAFVHGAGAETS 243

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID-VEEFLDLRKNTGDDRRRTHDMNT 481
           GV+ F ++ +     +   G R+GA    ++  H + ++ F+  R    D   R  ++  
Sbjct: 244 GVVSFAEIFDKMCSTIMSAGGRRGAQMLVIDVRHPESIDLFMAKRN---DGVLRYFNI-- 298

Query: 482 ANWIPDLFMKRVTQNAGWTLFS--------PDEV-------------------------S 508
           +   P+  M++V  +  +  +         P EV                          
Sbjct: 299 SLLFPNSLMEKVKNDEEFEQWFWTFEMTFTPSEVIEKNGNNVFFIGDKEVVIVENGKLPY 358

Query: 509 DLHDLYGKEFEI-----AYENYERQADRG-EIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +  +     F        YEN+ +   R  + +VF+++ A  ++  ++   ++   P I 
Sbjct: 359 EYEEYDYFAFGEDHQVMKYENFGKDKYRIYKKEVFKRVRAREIYDIVMQSTYDYAEPGII 418

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------- 615
           F D  N ++  +    + ++N C E  L         CNLGSI L               
Sbjct: 419 FIDNVNNKNVLKGKEYIRATNPCGEQPLPPY----GSCNLGSIFLHRFVKEPFNYDLKPE 474

Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             FD+DKL    R   R LD V DI    + + K++  T R  GLG+ G    L ++ + 
Sbjct: 475 ENFDFDKLFEVSRLMNRFLDFVNDITNLPLVQLKEAAFTKRRHGLGISGIADTLIMVGLR 534

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S EA +  ++ M  I   +   +V +A   G            GV   + + +   ++
Sbjct: 535 YGSEEAAKFLEKIMYTIQLASAVENVRMADIYGPAP--------VGVTLKEWVDVFGHLK 586

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS--QSIDPSYQNLYV 791
           ++L          +   +    + +R S+ ++IAPT TI+   G +    I+P++   Y+
Sbjct: 587 EKLE---------EIYGEDFYKLPLRYSHAISIAPTGTISLTFGNNVANGIEPTFALSYM 637

Query: 792 KSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
           ++  + G              Q +++  A I    Y   +  N         +   T  +
Sbjct: 638 RNIRLPGK---------KTKTQEEVYSFAAILFKNYFGHTNYN---------EYFVTTND 679

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I     I   +  QK++D A S    +  +   +     Y +A+ +GLK     R     
Sbjct: 680 ITVDEHIRMQASAQKYVDSAISKTCNVPTDYPFEMFKEAYIKAYELGLKGFTTFRFNPKF 739

Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           SV     K     L     TD        G         E
Sbjct: 740 SVGVLVKKDDLENLLIEFETDTGEKYVVKGSDIVVYDGEE 779


>gi|169829015|ref|YP_001699173.1| ribonucleotide-diphosphate reductase subunit alpha [Lysinibacillus
           sphaericus C3-41]
 gi|168993503|gb|ACA41043.1| Vitamin B12-dependent ribonucleotide reductase [Lysinibacillus
           sphaericus C3-41]
          Length = 866

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 152/711 (21%), Positives = 252/711 (35%), Gaps = 122/711 (17%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            +E P   F      R A GLA+ E   EK      +FY+ L S  F+ +   ++ +G+ 
Sbjct: 133 VLEKPLEIFYEQIAKRNATGLAIVEKTPEKRQEWFEKFYDQLVSLKFIPAGRVIYGAGSE 192

Query: 365 HP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
                 +C++   V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 193 TDVTFFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 252

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL----------DLRKNTGDD 472
           G + +L         V QGG R+GA    L  WH D+ EF+                  D
Sbjct: 253 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFIISKMQNPRILRYLIENTTD 312

Query: 473 RRRTHDMNTANWIPDLFMK------------------------------RVTQNAGWTLF 502
                          L M+                              ++     +T+ 
Sbjct: 313 ETIIRLAKEKLNFKPLSMQEEAMYQGIVNYKSIEGLGGFDTAIIREAENKLRDGGTYTVH 372

Query: 503 SP----------------DEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAV- 543
           +P                 E  +  D +   F     Y   E  A   E      +    
Sbjct: 373 NPEFLTGANISVTLTKEFMEAVENDDDFELRFPAVEEYSKEEMSAYNTEWHNVGDVREWE 432

Query: 544 ---------------ALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTE 587
                           LW  +      +  P I F D  N  +  + +   V ++N C E
Sbjct: 433 KMGYKIRTYRTIKAKELWNLINVCATYSAEPGIFFIDNANDMTNAKAYGQSVVATNPCGE 492

Query: 588 ITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L       +VCNL ++NL       N   DY+ L  T+R  VR+ DNVID   + +E+
Sbjct: 493 QPLAPY----SVCNLAAVNLAQFANKDNQTVDYEALRETVRVGVRMQDNVIDATPYFLEE 548

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
            +      R +GLG+MG    L      Y S     + DE  + I+  A  AS ELA+ER
Sbjct: 549 NRVQALGERRVGLGVMGLADLLIYCEKEYGSEAGNALVDEIFKTIAETAYEASTELAKER 608

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++    G+          +    A +R               +K+++   G+RNS+ + 
Sbjct: 609 GSFPFLVGA----------TDEETARLRKAFTETGFMEKMPAHIKEQILATGIRNSHLLT 658

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           +APT +   + GV+  ++P +   Y +S   G F  V + +V E   R            
Sbjct: 659 VAPTGSTGTMVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVKEYLDR------------ 706

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884
                  + E    +L +   TA E+ P    +     QKWID + S  +      + ++
Sbjct: 707 -------HPEANEQELPEWFVTAMELKPEAHADVQCIIQKWIDSSISKTVNAPKGYTVQQ 759

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
           ++ +Y + +  G K        S    +  TLK  +  ++ +   +     
Sbjct: 760 VEKVYERLYKGGAKGGTVYVDGSR-DSQVLTLKAEENDMDQLSFEEELVEE 809


>gi|288929559|ref|ZP_06423403.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329064|gb|EFC67651.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 854

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 145/734 (19%), Positives = 261/734 (35%), Gaps = 120/734 (16%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TE 334
              A  L Y   FA + L  ++  ++Y +  + G+  E  P+    R+A  +A  E    
Sbjct: 11  EAFAAALDY---FAGDELAARVWVNKYAMKDSFGNIYEKSPEDMHWRIANEIARIEGKYP 67

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQ 388
               A E Y LL  F ++    +         Q   LS+CF+  +    D    I    +
Sbjct: 68  NPLSAQEVYELLDHFRYIVPAGSPMTGIGNGYQVASLSNCFVVGLEGDADSYGAILRIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K  GG+G+D + +R  G+ ++ +   S G++PF++  +++         R+GA+
Sbjct: 128 EQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H D E F+D +   G    +    N +  I D FM+    +  +    P E  
Sbjct: 187 MLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDSFMQAAVDDKPYVQQFPIEGD 242

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           +                          V ++ISA  LW K++   +++  P + F D   
Sbjct: 243 NPE------------------------VKKEISAKTLWEKIVHNAWQSAEPGVLFWDTIL 278

Query: 569 I----RSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLAS 623
                           S+N C EI L           NL S  +        FD+DK A 
Sbjct: 279 RESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLCVNLFSYVVNPFTKEAYFDFDKFAK 338

Query: 624 TIRTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLG 659
            +  A R++D+++D+                          H  EK K+ +   R  G+G
Sbjct: 339 HVAVAQRIMDDIVDLELEKIDLIMEKIKDDPQNDEVKGAEYHLWEKIKRKSSMGRRTGVG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +      +  L + Y + EA +++    + ++  A  +SV +A+ERGA+  F        
Sbjct: 399 ITAEGDMIAALGLRYGTQEATDVSVSVHKRLALAAYRSSVVMAKERGAFEIFDAKREAAN 458

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
            F +                   +     L   +   G RN  C+ IAPT T + +   +
Sbjct: 459 PFILR-----------------LKEADQSLYDDMVAYGRRNIACLTIAPTGTTSLMTQTT 501

Query: 780 QSIDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAM 820
             I+P +  +Y +                        ++ V +   ++ +K      +  
Sbjct: 502 SGIEPVFMPVYKRRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHKKFMDWMKANGFDTDKR 561

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879
            +           I+ I +      ATA ++D +  +      QKW+D + S+ + L ++
Sbjct: 562 YTQ--------EEIDAIVEQSPYYKATANDVDWLMKVRMQGEIQKWVDHSISVTVNLPND 613

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
                ++ +Y +AW  G K     R  S + V  S    V  K                 
Sbjct: 614 VDEALVNRLYVEAWRSGCKGCTIYRDGSRSGVMIS----VSKKDKKKEDKQEEQPIVPCK 669

Query: 940 IPSSCTSDTECEVC 953
            P       +   C
Sbjct: 670 QPEVTEVRPKELAC 683


>gi|260588503|ref|ZP_05854416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
 gi|260540978|gb|EEX21547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Blautia hansenii DSM 20583]
          Length = 760

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 125/565 (22%), Positives = 227/565 (40%), Gaps = 78/565 (13%)

Query: 367 QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
             S+C++     D++  IF   ++ A    Y GG G D + +   GA I+    ++ G +
Sbjct: 77  TYSNCYVVEPPKDNIESIFDCAKKLARTYSYGGGCGVDISELSPRGAKINNAAKETSGAV 136

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F+++      ++     R+GA+   ++  H DV EF++L+     D  + +  N +  I
Sbjct: 137 SFMELY-SLVTSLIGQNGRRGALMISIDCSHPDVPEFIELKT----DLEKVNTANISVRI 191

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
            + FM+ V +N  + L    E +                           + R ++A  L
Sbjct: 192 HEDFMEAVKKNEEYCLHYTREETGQV------------------------IERMVNAREL 227

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLG 603
           + ++    ++   P   F D     +   +         N C E  L +       C LG
Sbjct: 228 FHRITETNWDYAEPGALFWDRITGWNLLSNTKEFSYAGVNPCAEEPLPAG----GSCLLG 283

Query: 604 SINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAI 656
           SINL A   N       FD+++    ++ +VR L+ V++  +  H + + ++S    R I
Sbjct: 284 SINLSAFVENPFTENAYFDFEEFKHCVQESVRALNEVLEEGLPLHPLPEQRESVSQWRQI 343

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG   AL  L + Y   +AV + D     ++  AI+AS  LA+E GA+        
Sbjct: 344 GLGIMGLADALIKLGLTYGEEDAVSVCDRIGFVMADTAIAASARLAKELGAFPKC----- 398

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                         +V + +          +  K+ V+  G+RNS  + IAPT T++ + 
Sbjct: 399 --------------KVEEIMETPYFLANTTEGTKELVRKYGLRNSQLLTIAPTGTLSTML 444

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G+S  I+P Y N Y +   S         L  E     ++ + +   ++ H  S   +  
Sbjct: 445 GISGGIEPIYANYYERKTES---------LHGEDVYYKVYTKIVKDFMEEHKVSDDRL-- 493

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
               L     TA  +D    I+  S  Q+ ID + S  + +    + ++ + +Y  A+  
Sbjct: 494 ----LPDYFVTAMTLDYHQRIDMQSIWQRHIDASISSTVNVPSGFTVEETENLYLYAFEQ 549

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD 920
           GLK     R         +T +   
Sbjct: 550 GLKGITIFRDGCKRVGILNTKETKK 574


>gi|323446056|gb|EGB02379.1| hypothetical protein AURANDRAFT_13764 [Aureococcus anophagefferens]
          Length = 343

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 154/350 (44%), Positives = 212/350 (60%), Gaps = 14/350 (4%)

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
           +G+  E PQ   MRVA+G+   +      A+E Y ++S   F  +TPTLFN+GT  PQLS
Sbjct: 2   DGAIAERPQHMIMRVALGIHGDD---LAGALETYEMMSQKMFTHATPTLFNAGTPRPQLS 58

Query: 370 SCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL  +  D + GI+  L+  A ++KY+GG+G     +R   ++I G+NG S G++P L
Sbjct: 59  SCFLLAMKEDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPML 118

Query: 429 KVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +V NDTA  V+QGG +RKG+   YLE WH D+E +LDL+KN G++  R  D+    WIPD
Sbjct: 119 RVYNDTARYVDQGGGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPD 178

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           LFMKRV  N  W+L  P+E   L D +G EFE  YE YE      E +  + I A  LW 
Sbjct: 179 LFMKRVEANGFWSLMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWF 233

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +L    ETG P++ +KD CN +S Q+H+G + SSNLCTEI   ++S+E AVC L SINL
Sbjct: 234 AILDSQVETGTPYMLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINL 293

Query: 608 LAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            AH         FD+ KL  T     + L+ V+D+N + +E+AK SN  H
Sbjct: 294 TAHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKH 343


>gi|332830258|gb|EGK02886.1| hypothetical protein HMPREF9455_01136 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 848

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 145/736 (19%), Positives = 267/736 (36%), Gaps = 117/736 (15%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAM 326
           + + +  FD  Y    L Y   F  + L  ++  ++Y L    G+  E  P+    R+A 
Sbjct: 1   MAQKVYTFDEAY-NAALNY---FNGDELAAKVWVNKYALKDAAGNIYEQSPEDMHWRLAN 56

Query: 327 GLALKETEKEKRA--VEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---D 378
            +   E++ EK     E Y+L   F ++    +         Q   LS+CF+  +    D
Sbjct: 57  EIGRIESKYEKGLTNKELYDLFDHFKYIVPQGSPMTGIGNDFQIASLSNCFVIGLNGPSD 116

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
               I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  +++    
Sbjct: 117 SYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-E 175

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
                R+GA+   +   H D E F+D +   G    +    N +  I D FM+ V   + 
Sbjct: 176 VAQDGRRGALMLSVSIKHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVDGSK 231

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +T   P + S+                            + I A  LWRK++   +++  
Sbjct: 232 YTQQYPIDSSNPTT------------------------VKDIQATELWRKIVHNAWKSAE 267

Query: 559 PWITFKDPCNI----RSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFAN 613
           P + F D                   S+N C EI L           NL S  +     +
Sbjct: 268 PGVLFWDTIIKESVPDCYADLGFKTISTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKDD 327

Query: 614 NQFDYDKLASTIRTAVRVLDNVIDIN------------------------CHTIEKAKKS 649
             FD++  +  +  A R++D++ID+                          H  EK +  
Sbjct: 328 AHFDFELFSKHVGLAQRIMDDIIDLETEKIDKILQKIDDDPETDEVRWPERHLWEKIRTK 387

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R  G+G+      +  + + Y + EA   A+E    ++  A  +SVELA+ERGA+ 
Sbjct: 388 TLQGRRTGVGITAEGDMIAAMGLRYGTEEATAFAEEVHRVLAVAAYRSSVELAKERGAFE 447

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            F                     +    +NR +     +L K ++  G RN  C+ +APT
Sbjct: 448 IFD----------------FKREKKNPFINRLA-EVDPQLIKDMEKYGRRNIACLTVAPT 490

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNEL 810
            T + +   +  I+P +  +Y +                        ++ V +   V  +
Sbjct: 491 GTTSLMTQSTSGIEPVFMPVYKRRRKVNPNDKEVRVDFVDENGDSWEEYIVFHHKFVTWM 550

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           + +           KY +  +  +       K    T+ ++D +  ++   R QKW+D +
Sbjct: 551 ESKGYPTSK-----KYTNEEVETMVAESPYYKA---TSNDVDWLQKVKMQGRIQKWVDHS 602

Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S+ + L  + S   ++ +Y +AW  G K     R  S   V  +         N     
Sbjct: 603 ISVTINLPSDVSEDLVNDLYIEAWKSGCKGCTVYRDGSRAGVLVAADNKKQADENCDDCY 662

Query: 930 DPNSSTHSLGIPSSCT 945
           +            +  
Sbjct: 663 ERPEILQERPRELAAD 678


>gi|225019985|ref|ZP_03709177.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum
           DSM 5476]
 gi|224947349|gb|EEG28558.1| hypothetical protein CLOSTMETH_03946 [Clostridium methylpentosum
           DSM 5476]
          Length = 757

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 225/569 (39%), Gaps = 78/569 (13%)

Query: 368 LSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           LS+C++     D++  IF    + A    Y GG G D + +   GA I+    ++ G + 
Sbjct: 73  LSNCYVISPPEDNIESIFECATKLARTYSYGGGCGTDISGLSPRGAKINNAARETSGSVS 132

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           F+ + +     +     R+GA+   +   H DVEEF+ ++ N      +    N +  I 
Sbjct: 133 FMDLYSLITE-LIGQNGRRGALMLSISCSHPDVEEFIKVKTNLE----KVTKANISVRIT 187

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           + FM+ V  +A +TL      +  H                        + RK++A  L+
Sbjct: 188 NDFMQAVKDSAEYTLEFTRVETGEH------------------------IERKVNARELF 223

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLGS 604
           R +    ++   P   F D  +  +   +         N C E  L +       C LGS
Sbjct: 224 RLIAETNWDFAEPGALFWDRISSWNLLSNNKEFRYAGVNPCAEEPLPAG----GSCLLGS 279

Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAIG 657
           INL     +       FD+     T+  + R L++V++  +  H +E+ ++S    R IG
Sbjct: 280 INLSEFVTDPFTENARFDFAAFKETVAVSTRALNDVLEEGLPLHPLEEQRESVSNWRQIG 339

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  L I Y   EA++++D+    ++  AI+ S  LA++ GA+         
Sbjct: 340 LGIMGLADMLVKLGITYGEQEAIDLSDKIGFAMADTAIAESARLAKQHGAFPKCN----- 394

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                         + + +           +  + VK  G+RNS  + IAPT T++ + G
Sbjct: 395 --------------IEEIIETPYFQANTSPKTLELVKKYGLRNSQLLTIAPTGTLSTMLG 440

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           +S  I+P Y N Y +                 L  +D++ +     + +       ++  
Sbjct: 441 ISGGIEPIYANFYERKT-------------ESLHGKDVYYKVYTPIVDHFMKEHEILDD- 486

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896
              L +   TA  +D    I+  +  Q+ ID + S  + +    + ++ + +Y  A+  G
Sbjct: 487 -SSLPEFFVTAMTLDYRQRIDMQAAWQQHIDASISSTVNVPNQFTVEETEDLYMYAYDQG 545

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           LK     R     +   +T       + A
Sbjct: 546 LKGITIFRDGCKRTGILTTDSSKKDTVIA 574


>gi|325860121|ref|ZP_08173247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola CRIS 18C-A]
 gi|325482406|gb|EGC85413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola CRIS 18C-A]
          Length = 865

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 134/706 (18%), Positives = 265/706 (37%), Gaps = 97/706 (13%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
           + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A E ++LL  F
Sbjct: 23  DELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARIEHKYKNPLAAQEVFDLLDHF 82

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +       H Q   LS+CF+  +    D    I    +E   L K  GG+G+D
Sbjct: 83  RYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRRGGVGHD 142

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 143 MSQIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSEAFI 201

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +     +  +    N +  I D FM+    +  +    P +                 
Sbjct: 202 DAKM----EEGKVTGANVSVKITDEFMQAAVADRPFVQQFPIDARAPM------------ 245

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V + +SA  LW K++   +++  P + F D     S       +    
Sbjct: 246 ------------VSKTVSAKTLWGKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFQT 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + T             C L S+NL ++       +  FD+D  +   + A R++D+++D+
Sbjct: 294 VSTNPCGEIPLCPYDSCRLLSLNLYSYVVDPFTDHAHFDFDLFSRHAQLAQRIMDDIVDL 353

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                     H  EK ++ +   R  G+G+      +  + + Y
Sbjct: 354 EMEKIDLIMEKIKHDPQSEEVKYAEYHLWEKIREKSGKGRRTGVGITAEGDMIAAMGLRY 413

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + EA + +      ++ +A  ASV +AQERGA+    G    +       I  L E   
Sbjct: 414 GTQEATDFSVNVHRTLALNAYRASVTMAQERGAF----GIYDAKREENNPFINRLKEA-- 467

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                        +L + +K  G RN  C+ IAPT T + +   +  I+P +  +Y +  
Sbjct: 468 -----------DAKLYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRR 516

Query: 795 MSG-DFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIPDDLKK 843
               + T V+   V+E     ++  ++    ++ ++ +        +   I+ +      
Sbjct: 517 KVNPNDTDVHVDFVDEVGDSFEEYIVYHHKFLTWMEVNGIDTRKRYTQEEIDGLVKRSPY 576

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
             ATA ++D +  +      QKW+D + S+ + L      + ++ +Y +AW  G K    
Sbjct: 577 YKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDEELVNKLYVEAWRSGCKGCTI 636

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            R  S + V  S  K                   +    +      
Sbjct: 637 YRDGSRSGVMISVSKKDKKPEKPADEEKAKDLNSAEEHHTHIMERP 682


>gi|332300423|ref|YP_004442344.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332177486|gb|AEE13176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 857

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 142/707 (20%), Positives = 259/707 (36%), Gaps = 114/707 (16%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
           + L  ++   +Y L  + G+  E  P+    R+A  L   E          E  +L+  F
Sbjct: 22  DELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIARELVRIEHNYPNPLSESELMDLMDHF 81

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +       + Q   LS+CF+  +   PD   GI    +E   L K  GG+G+D
Sbjct: 82  RYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPDSYGGIIRIDEEQVQLMKRRGGVGHD 141

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 142 LSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLTVSINHPDSESFI 200

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +   G    +    N +  I D FM+ V  +  +    P                   
Sbjct: 201 DAKMTEG----KVTGANVSVRIDDAFMQAVVDDKEYVQTYP------------------- 237

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                    E K  R I A  LW K++   + +  P + F D     S       +    
Sbjct: 238 -----IHSKEPKFTRTIQARQLWDKIIYNAWRSAEPGVLFWDTIIRESVPDCYADLGFKT 292

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDI 638
           + T             C L +INL ++  N       FD+D     +  A+R++D++ID+
Sbjct: 293 ISTNPCGEIPLCPYDSCRLLAINLYSYVRNPFTAEASFDFDLFREHVAKALRIMDDIIDL 352

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                         K K+     R  G+G+      L  + + Y
Sbjct: 353 EAEKIDAILMKIASDTETEEVKAAERELWRKIKRKTLLGRRTGVGITAEGDMLAAMGMRY 412

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA+  A+E  + +   A ++SVELA+ERGA+  +                     +D
Sbjct: 413 GSDEAISFAEEVQKTLCLSAYASSVELAKERGAFDLYD----------------TEREKD 456

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              + R ++    +L + +K  G RN   + IAPT + + +   S  I+P +  +Y +  
Sbjct: 457 NPFIQRVAKAD-PKLYEEMKKFGRRNIAMLTIAPTGSTSLMTQTSSGIEPVFMPVYKRRR 515

Query: 795 MS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
                                 ++TV +   +  +K               H+ S   ++
Sbjct: 516 KVNPNDKNVKVDYTDETGDTFEEYTVYHHNFLTWMKANGYD--------PNHNYSHEELQ 567

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
            +        ATA ++D +  ++   R Q+W+D + S+ + L  + S + +  +Y +AW 
Sbjct: 568 ELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDISQEMVATLYIEAWK 627

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            G K     R  S + V  S  +    +  A    +          P
Sbjct: 628 AGCKGCTVYREGSRSGVLIS-EEQQKKEQQAKSEQESAPEVPVEPTP 673


>gi|313887183|ref|ZP_07820879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923412|gb|EFR34225.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 857

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 144/707 (20%), Positives = 258/707 (36%), Gaps = 114/707 (16%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
           + L  ++   +Y L  + G+  E  P+    R+A  L   E          E  +L+  F
Sbjct: 22  DELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIARELVRIEHNYPNPLSESELMDLMDHF 81

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTV---PDDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +       + Q   LS+CF+  +   PD   GI    +E   L K  GG+G+D
Sbjct: 82  RYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPDSYGGIIRIDEEQVQLMKRRGGVGHD 141

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 142 LSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLTVSINHPDSESFI 200

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +   G    +    N +  I D FM+ V ++  +    P                   
Sbjct: 201 DAKMTEG----KVTGANVSVRIDDAFMQAVVEDKEYVQTYP------------------- 237

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHVGVV 579
                    E K  R I A  LW K++   + +  P + F D                  
Sbjct: 238 -----IHSKEPKFTRTIQARQLWDKIIYNAWRSAEPGVLFWDTIIRESVPDCYADLGFKT 292

Query: 580 HSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
            S+N C EI L           NL S       A   FD+D     +  A+R++D++ID+
Sbjct: 293 ISTNPCGEIPLCPYDSCRLLAINLYSYVCNPFTAEASFDFDLFREHVAKALRIMDDIIDL 352

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                         K K+     R  G+G+      L  + + Y
Sbjct: 353 EAEKIDAILMKIASDTETEEVKAAERELWRKIKRKTLLGRRTGVGITAEGDMLAAMGMRY 412

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S EA+  A+E  + +   A ++SVELA+ERGA+  +                     +D
Sbjct: 413 GSDEAISFAEEVQKTLCLSAYASSVELAKERGAFDLYD----------------TEREKD 456

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
              + R ++    +L + +K  G RN   + IAPT + + +   S  I+P +  +Y +  
Sbjct: 457 NPFIQRVAKAD-PKLYEEMKKFGRRNIAMLTIAPTGSTSLMTQTSSGIEPVFMPVYKRRR 515

Query: 795 MS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
                                 ++TV +   +  +K               H+ S   ++
Sbjct: 516 KVNPNDKNVKVDYTDETGDTFEEYTVYHHNFLTWMKANGYD--------PNHNYSHEELQ 567

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
            +        ATA ++D +  ++   R Q+W+D + S+ + L  + S + +  +Y +AW 
Sbjct: 568 ELVAKSPYHKATANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDISQEMVATLYIEAWK 627

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
            G K     R  S + V  S  +    +  A    +          P
Sbjct: 628 AGCKGCTVYREGSRSGVLIS-EEQQKKEQQAKSEQESAPEVPVEPTP 673


>gi|224536055|ref|ZP_03676594.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522328|gb|EEF91433.1| hypothetical protein BACCELL_00919 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 845

 Score =  257 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 137/708 (19%), Positives = 266/708 (37%), Gaps = 113/708 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E        A E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLDHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM        +    P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                      +  E  V ++I+A  LW+K++   +++  P + F D     S       
Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD++     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFELFQKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMEKIDADPESEDVKHTERILWDKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYD----------------T 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R    +L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPQLYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++ +        +        
Sbjct: 511 YKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHPKFVTWMEAQGHNPSKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y
Sbjct: 564 -EEIDVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            +AW  G K     R  S + V  S       ++          +  +
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISAKSDKKEEMPPCKPPTVVETRPT 670


>gi|282858151|ref|ZP_06267346.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyramidobacter piscolens W5455]
 gi|282584073|gb|EFB89446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pyramidobacter piscolens W5455]
          Length = 894

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 152/735 (20%), Positives = 259/735 (35%), Gaps = 141/735 (19%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMR-----VAMGLALKETEKEKRAVE-----FYNLLSS 348
           +   DRY     G R E     F R     V    +L     E   +       +  L  
Sbjct: 37  RYFADRYDPETGGLRKERSFEEFARRVSRIVCTAESLYRGADEIEWIRRLEKNLFADLVE 96

Query: 349 FHFMCSTPTLFNSG--------------------------------TRHPQLSSCFLTTV 376
             F+ ++P LF SG                                T + QL +CF+  +
Sbjct: 97  GRFIFNSPCLFASGAGMTRVPELAELIYRSPDEMELADYRRLYDGKTDNQQLFACFVIDI 156

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG-TNGKSQGVIPFLKVANDTA 435
           PD + GIF +++  A+++KY GG+G ++  +R  GA I G T GK+ G + F++  N   
Sbjct: 157 PDSIEGIFDSVRAAAVISKYGGGVGGNFGRLRERGADIKGGTGGKASGPVSFMETWNTMG 216

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V QGG+R+ A+   L   H D+E+F+D +     +  +    N +  + D  +    +
Sbjct: 217 CVVVQGGRRRAALMGMLPDDHPDIEQFMDAKT----EEGKLSYFNISVCVSDELVGAARE 272

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
              +                               R   KV R +S   LW K+    + 
Sbjct: 273 KRPF---------------------------ALRSRANGKVVRTVSGDELWNKLCQNAWR 305

Query: 556 TGHPWITFKDPCNIRSPQQHVGV--VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613
            G P + F D  N  +  +  G   + S+N C E  L +       CNLGS+NL+     
Sbjct: 306 RGDPGVFFIDRANDDNLLKLSGDFDIESTNPCGEQPLPTY----TSCNLGSVNLVKFVRP 361

Query: 614 -----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  FD +     +  ++  LD VID   + +++  +     R +GLGLMG   A  
Sbjct: 362 DETGRQSFDMEGFMDQVYRSIYYLDLVIDATSYPLQRIGERTKRIRPVGLGLMGLADAAI 421

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
           L    Y S       D     ++  A+ A+V+     G     + S     +F  +    
Sbjct: 422 LSGDVYGSESFKSFCDSLGAHMAGAALMATVDAVAHMGKEPFSE-SFAVARLFEEEHRAH 480

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIG------------------------------- 757
             E+     ++      + E   R++T G                               
Sbjct: 481 GGELFARQWIDEMDLNSYREFIARMRTHGQVPYTLLNTLEILPDVLGDEALPELKRLMTA 540

Query: 758 -----MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS--GDFTVVNSFLVNEL 810
                +RNS  ++IAPT +I+ I   S  I+P++   + +  M   GD   V  +    +
Sbjct: 541 LLEGKLRNSRRLSIAPTGSISMIFDSSAGIEPNFAWRWSRKVMKSDGDGWEVREYFHPLI 600

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            Q++  +             +     I D     + TA++I P   ++      +++D  
Sbjct: 601 TQKEADE-------------LRGSGVISD---PRYVTAYDISPEQHVDVTGIFARYVDSG 644

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  + L    +   +  +Y   + MG K     R  S  +    T K  + K  A    
Sbjct: 645 ISKTVNLSSSATVDDVRKVYETCYDMGCKGITIYRDGSRDNQPIETKKESESKSEAPATV 704

Query: 930 DPNSSTHSLGIPSSC 944
               +        S 
Sbjct: 705 TRAEAEEKPSAEESS 719


>gi|294775362|ref|ZP_06740884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides vulgatus PC510]
 gi|294450819|gb|EFG19297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides vulgatus PC510]
          Length = 848

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 142/708 (20%), Positives = 262/708 (37%), Gaps = 113/708 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +    P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYPVDSDQPV--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                            + I A ALW+K++   +++  P + F D               
Sbjct: 245 ---------------FTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLG 289

Query: 577 GVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               S+N C EI L           NL S  +  +     FD+D     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +++  + I+  A  +SV +A+ERGA++ +      +       I  L E
Sbjct: 410 LRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYD----SEREKNNPFINRLKE 465

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                           EL + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 466 A-------------DPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  +           +          
Sbjct: 513 RRRKVNPNDPQTHVDFVDETGDAFEEYIVFHHKFVEWMTVNGYDPTKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+++ +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           AW  G K     R  S + V  ST K    K   +P   P +      
Sbjct: 625 AWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKPPTVVEVRP 672


>gi|325281019|ref|YP_004253561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Odoribacter splanchnicus DSM 20712]
 gi|324312828|gb|ADY33381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Odoribacter splanchnicus DSM 20712]
          Length = 846

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 141/705 (20%), Positives = 251/705 (35%), Gaps = 122/705 (17%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346
           F  + L  ++  ++Y L  + G+  E  P     R+A  ++  E        E   + +L
Sbjct: 25  FNGDELAARVWVNKYALKDSYGNIFEKNPDDMHRRLAKEISRIENRYPNPLSEDTIFEVL 84

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTT---VPDDLYGIFGALQENAMLAKYSGGL 400
             F ++              Q   LS+CF+       D   G+    QE   L K  GG+
Sbjct: 85  RDFKYIVPQGGPMTGIGNEFQIASLSNCFVIGNEGPSDSYGGVMKIDQEQVQLMKRRGGV 144

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 145 GHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSVSINHPDSE 203

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM+ V  +  +    P                
Sbjct: 204 SFIDAKMTEG----KVTGANVSVKIDDEFMRAVINDEEYEQKYP---------------- 243

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                       E K  ++I+A  LW K++   +++  P I F D               
Sbjct: 244 --------VYSDEPKNRKQINARQLWNKIVHNAWKSAEPGILFWDTIIRESVPDCYADKG 295

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRV 631
               S+N C EI L         C L +INL ++          FD+      +  A R+
Sbjct: 296 YRTVSTNPCGEIPLCPY----DSCRLLAINLYSYVQNPFTKGAFFDFPLFKKHVAIAQRI 351

Query: 632 LDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+                             EK K+     R  G+G+      L
Sbjct: 352 MDDIIDLELEKIDAILDKVHEDPESEEVKGVEIRLWEKIKQKAKEGRRTGVGITAEGDML 411

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y S EA++ A +  + ++  A  ASV LA++RG++  +                
Sbjct: 412 AALGLRYGSEEAIDFAVDIQKTLAVEAYRASVHLAKDRGSFKIYDTRR------------ 459

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
              E  +        R    ++   +   G RN  C+ IAPT T + +   +  I+P + 
Sbjct: 460 ---EENNPFIKR--LREADPDMYAEMVKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFL 514

Query: 788 NLYVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +Y +                        +F V +    + +K          +D     
Sbjct: 515 PVYKRRRKVNPNDQNVHIDFVDESGDSYEEFIVFHHKFADWMKANGYDTTKCYTD----- 569

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
                I+ +        AT+ +ID +  +    + QKW+D + S+ + L  + + + +  
Sbjct: 570 ---EEIDELVAQSPYYKATSNDIDWVAKVRMQGQVQKWVDHSISVTVNLPSDVTEELVGN 626

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDP 931
           +Y +AW  G K     R  S   V  S          N +P   P
Sbjct: 627 LYIEAWKSGCKGCTVYRDGSRAGVLVSNKDKKQTTSPNEMPAKRP 671


>gi|86141198|ref|ZP_01059744.1| putative ribonucleoside reductase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831757|gb|EAQ50212.1| putative ribonucleoside reductase [Leeuwenhoekiella blandensis
           MED217]
          Length = 852

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 137/700 (19%), Positives = 259/700 (37%), Gaps = 115/700 (16%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLL 346
           F  + L  ++  ++Y L   +G+  E  P     R+A  +A  E       +  E ++L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSDGNIYEKTPDDMHTRIAKEIARIEARYPNPMQEDEVFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
            +F ++    +         Q   LS+CF+       D   GI    QE   L K  GG+
Sbjct: 86  KNFKYIVPQGSPMAGIGNPYQVGSLSNCFVIGNDGSSDSYGGIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSINHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FM+ V  +  +T   P    +           
Sbjct: 205 DFIDAKM----EQGKVTGANVSVRIDDGFMQAVKDHKPYTQKYPVFSPNP---------- 250

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                            ++I A  LW+K++   +++  P I F D     S       + 
Sbjct: 251 --------------IKQKEIDAEKLWKKIVHNAWQSAEPGILFWDTIARESVPDCYADLG 296

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++          F+++     I  A R++D++
Sbjct: 297 YKTVSTNPCGEIPLCPYDSCRLLAINLFSYVEKPFTPEASFNFELFKKHIAKAQRIMDDI 356

Query: 636 IDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+    ++                          KK     R  G+G+      L  L 
Sbjct: 357 IDLELEKVDAILAKIDADPENDEVKNVERNLWLNIKKKAEEGRRTGIGITAEGDMLAALG 416

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S    E + E  + I+  A  ASV  A+ERGA+  F                    
Sbjct: 417 IKYGSEAGNEFSVEIHKTIAVEAYRASVYAAKERGAFPIFD----------------SER 460

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            +D   + R      ++L   +   G RN   + IAPT T + +   +  I+P +  +Y 
Sbjct: 461 EKDNPFIQRIKNAD-EKLYYDMLEYGRRNIALLTIAPTGTTSLMTQTTSGIEPVFLPVYK 519

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--------------------DGSI 831
           +         VN    N+ + R  + + +    + +                    + S 
Sbjct: 520 RRRK------VNP---NDKEARVDFVDEVGDSWEEYVVFHHRFKEWMQINGIATDKNYSQ 570

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
             ++ I        AT+ ++D +  +      QKW+D + S+ + L ++   + +  +Y 
Sbjct: 571 EELDVIVAKSPYYQATSNDVDWLNKVRMQGAVQKWVDHSISVTINLPNDVDEELVGQLYL 630

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           +AW  G K     R  S + V  S  +  + + ++  +T 
Sbjct: 631 EAWQAGCKGVTVYRDGSRSGVLISNDEKKNEEEDSETLTA 670


>gi|295134666|ref|YP_003585342.1| ribonucleotide reductase large subunit [Zunongwangia profunda
           SM-A87]
 gi|294982681|gb|ADF53146.1| ribonucleotide reductase large subunit [Zunongwangia profunda
           SM-A87]
          Length = 850

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 143/678 (21%), Positives = 253/678 (37%), Gaps = 103/678 (15%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
           F  + L  ++  ++Y L   +G+  E  P     R+A  +A  E          E ++L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSDGNIYEQTPNDMHRRIAKEIARVEQRYPNPMTEDEVFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+       D   G+    QE   L K  GG+
Sbjct: 86  KDFKYIVPQGSPMAGIGNPYQIASLSNCFVIGNEGSSDSYGGVMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSVSINHPDSE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FMK V     +T   P                
Sbjct: 205 DFIDAKM----EQGKVTGANVSVRIDDDFMKAVKNKTAYTQKYP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP-CNIRSPQQHVGVV 579
                         K  ++I A  LW+K++   +++  P I F D   N   P  +  + 
Sbjct: 245 --------VFSDAPKFSKEIEAEKLWKKIVHNAWKSAEPGILFWDTVINESVPDCYADLG 296

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634
           + +                 C L +INL ++  +       F+Y      I  A R++D+
Sbjct: 297 YKTVSTNPCGEIP-LCPYDSCRLLAINLFSYVEDPFTTKAKFNYTLFKKHISAAQRIMDD 355

Query: 635 VIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSALHLL 670
           +ID+    I+                          KK     R  G+G+      L  L
Sbjct: 356 IIDLELEKIDAILQKIDADPENEDVKGVERNLWLNIKKKAEEGRRTGIGITAEGDMLAGL 415

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            I Y S E V  + E  + I+  A  ASVE A+ERGA+    G            I  L 
Sbjct: 416 GIKYGSEEGVAFSTEIHKNIALAAYRASVETAKERGAF----GIFDSDREKENPFILRLK 471

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E               ++L   +   G RN   + IAPT T + +   +  I+P +  +Y
Sbjct: 472 EA-------------DEKLYYDMLEYGRRNIALLTIAPTGTTSLMTQTTSGIEPVFLPVY 518

Query: 791 VKSNMSG-DFTVVNSFLVNELKQRDLWDEAM--------ISDL----KYHDGSIGNIERI 837
            +      +   V    V+E+     W+E +           +       + S  +++ +
Sbjct: 519 KRRRKVNPNDKDVRVDFVDEVGDS--WEEYVVFHHRFKEWMKINGHDIDKNYSNTDLDEL 576

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896
                   AT+ ++D +  +      QKW+D + S+ + L ++ S   +  +Y +AW  G
Sbjct: 577 VKASPYYQATSNDVDWLSKVRMQGAVQKWVDHSISVTINLPNDVSEDLVGRLYLEAWQAG 636

Query: 897 LKTTYYLRSRSATSVEKS 914
            K     R  S + V  S
Sbjct: 637 CKGVTVYRDGSRSGVLIS 654


>gi|150002611|ref|YP_001297355.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482]
 gi|149931035|gb|ABR37733.1| putative ribonucleoside reductase [Bacteroides vulgatus ATCC 8482]
          Length = 848

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/708 (20%), Positives = 262/708 (37%), Gaps = 113/708 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +    P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYPVDSDQPV--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                            + I A ALW+K++   +++  P + F D               
Sbjct: 245 ---------------FTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLG 289

Query: 577 GVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               S+N C EI L           NL S  +  +     FD+D     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +++  + I+  A  +SV +A+ERGA++ +      +       I  L E
Sbjct: 410 LRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYD----SEREKNNPFINRLKE 465

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                           EL + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 466 A-------------DPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  +           +          
Sbjct: 513 RRRKVNPNDPQTHVDFVDETGDAFEEYIVFHHKFVEWMTVNGYDPTKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+++ +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           AW  G K     R  S + V  ST K    K   +P   P +      
Sbjct: 625 AWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKPPTVVEVRP 672


>gi|254881426|ref|ZP_05254136.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642814|ref|ZP_07997452.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A]
 gi|254834219|gb|EET14528.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385558|gb|EFV66499.1| ribonucleoside reductase [Bacteroides sp. 3_1_40A]
          Length = 848

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 142/708 (20%), Positives = 262/708 (37%), Gaps = 113/708 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYQNGLNAQQLYELL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D   GI    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGGIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +    P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYPVDSDQPV--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                            + I A ALW+K++   +++  P + F D               
Sbjct: 245 ---------------FTKDIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLG 289

Query: 577 GVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               S+N C EI L           NL S  +  +     FD+D     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPYTKEAYFDFDLFKKHVALAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +++  + I+  A  +SV +A+ERGA++ +      +       I  L E
Sbjct: 410 LRYGTEEATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYD----SEREKNNPFINRLKE 465

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                           EL + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 466 A-------------DPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  +           +          
Sbjct: 513 RRRKVNPNDPQTHVDFVDETGDAFEEYIVFHHKFVEWMTVNGYDPTKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+++ +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EIDKLVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           AW  G K     R  S + V  ST K    K   +P   P +      
Sbjct: 625 AWRSGCKGCTVYRDGSRSGVLLSTQKDKKDKKEELPPCKPPTVVEVRP 672


>gi|189463959|ref|ZP_03012744.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM
           17393]
 gi|189438532|gb|EDV07517.1| hypothetical protein BACINT_00294 [Bacteroides intestinalis DSM
           17393]
          Length = 845

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 137/708 (19%), Positives = 266/708 (37%), Gaps = 113/708 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E        A E ++
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRIANEVARIEAKYSNPLSAEELFD 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           LL  F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LLDHFRYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM        +    P              
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMTAAITGTPYIQQYP-------------- 237

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                      +  E  V ++I+A  LW+K++   +++  P + F D     S       
Sbjct: 238 ----------VNAAEPTVQKEINATNLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       F+++     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFNFELFQKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKA------------------------KKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIIEKIDADPESEDVRHTERVLWDKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SVE+A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFSEKVHKTVALSAYRSSVEMAKERGAFEIYD----------------T 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R    +L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPQLYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++ +        +        
Sbjct: 511 YKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFHPKFVTWMEAQGHNPSKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y
Sbjct: 564 -EEIDVLVEQSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEDLVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            +AW  G K     R  S + V  S       ++          +  S
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISAKSDKKEEMPPCKPPTVVETRPS 670


>gi|260593155|ref|ZP_05858613.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319]
 gi|260534863|gb|EEX17480.1| ribonucleoside-diphosphate reductase [Prevotella veroralis F0319]
          Length = 902

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 136/709 (19%), Positives = 257/709 (36%), Gaps = 113/709 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +      E +NLL
Sbjct: 56  FNGDELAARVWVNKYAMKDSLGNIYEKSPEQMHRRIAKEIARIEHKYKNPLTEEEIFNLL 115

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 116 DHFRYIIPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYGAILRIDEEQVQLMKRRGGV 175

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +H +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 176 GHDLSHIRPKGSPVHNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 234

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     +  +    N +  I D FM+    +  +    P +              
Sbjct: 235 AFIDAKM----EEGKVTGANVSVKITDEFMRAAIDDKPYEQQFPIDS------------- 277

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                       E K  +K+SA ALW K++   +++  P + F D               
Sbjct: 278 -----------TEPKCTKKVSAKALWEKIVHNAWKSAEPGVLFWDTIIRESIPDCYADLG 326

Query: 577 GVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               S+N C EI L           NL S  L     +  FD+D  +   + A R++D++
Sbjct: 327 FRTVSTNPCGEIPLCPYDSCRLLSLNLYSYVLDPFTDHACFDFDLFSKHAQLAQRIMDDI 386

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK K  +   R  G+G+      +  + 
Sbjct: 387 VDLEMEKIDLIMAKVKSDPQVDEVKEAEYHLWEKIKDKSGKGRRTGVGITAEGDMIAAMG 446

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + +      ++ +A  +SV +A+ERGA++                     E
Sbjct: 447 LRYGTQEATDFSVSVHRALALNAYRSSVRMAEERGAFAI---------------YDAKRE 491

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +   +    +    +L + +   G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 492 EHNPFILR--LKEADAQLYEEMIRYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 549

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   +  ++   +  +           S  
Sbjct: 550 RRRKVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTWMEVNGIDTQK--------KYSQE 601

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            I+ +        ATA ++D +  +      QKW+D + S+ + L        ++ +Y +
Sbjct: 602 EIDTLVKRSPYYKATANDVDWLMKVRMQGTIQKWVDHSISVTVNLPNSVDEALVNKLYVE 661

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           AW  G K     R  S + V  S  K    K       +      S   
Sbjct: 662 AWRSGCKGCTIYRDGSRSGVMISVSKKDKKKETNTAEEEKVKDLTSAEE 710


>gi|311992720|ref|YP_004009588.1| NrdA ribonucleoside triphosphate reductase alpha chain
           [Acinetobacter phage Ac42]
 gi|298684503|gb|ADI96464.1| NrdA ribonucleoside triphosphate reductase alpha chain
           [Acinetobacter phage Ac42]
          Length = 768

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 140/824 (16%), Positives = 267/824 (32%), Gaps = 86/824 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +++  +G +  F + +L      A   L + V     +        + ++  +L+  LI 
Sbjct: 4   QVVKRNGEIQDFEASKLNGWGIWASKNLGKHVDWISAVLHVVSTSPEKVTTKELQETLIK 63

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
               L +    Y ++  R  +  L ++V        ++                 ++ G+
Sbjct: 64  YC--LAKPSWAYHRMAGRLYISLLYKQVYDDKIPSIRQV------------HKNLVKAGM 109

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFFM 322
                  S  D D   L   + + RD    +  ++   ++Y     ++G   E PQ   M
Sbjct: 110 MTNDFVNSYSDEDYKALEKIIDHSRDLDVAHYQIKQSMEKYSLKDRVDGIYYETPQFTMM 169

Query: 323 RVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           RVAM +   +    E+  R    Y+  S       TP   NSGT +    SC L T  D+
Sbjct: 170 RVAMRMCQNKGTGAERIARIKRHYDAYSRDMVNVPTPYYTNSGTANSGFLSCCLHTNDDN 229

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  +  A   + M+   S G+G   +  R  G  + G   +  G I +   A    +  N
Sbjct: 230 LLSLAAANHISYMMTAASAGIG-SKSYTRAAGDKVRGGLIEHMGRINY-NRAEVAMINAN 287

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
               R G+   + ++  I+    + ++       ++   ++      D F+++   +  +
Sbjct: 288 MQNGRGGSQSQFFDSVDIESIAIIPMKNPMTPLAKQVRGLDYGFCYNDYFVQQAATSGDY 347

Query: 500 TLFSPDEVSDLHDLYGKEFE-IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
            LFS  +  +L            YE   ++A  G+ +  + ++A      +L    E G 
Sbjct: 348 YLFSYKDHPELFTAMASNMSVKEYEKLFKKAIAGKNRRLK-VNARDFLMSVLEQSVEVGQ 406

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-----------LGSINL 607
            +       N          +  SNLC EI L +   +                +    +
Sbjct: 407 MYTVNLSIMNG-DGTPFKDPILQSNLCLEIRLPTRPYKHITELYKTHYDEGDGEVAVCAI 465

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                      +        A+ ++   I    +   +   +       G+G++     +
Sbjct: 466 AGVSVGKCITEEDYKEAAWVALDMIHTAIHETDYPFPQVAFTAKQRMNAGVGVVDLAHLM 525

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
                 +   E      + ME   F+ + AS+ELA+E G       + W  G  PID   
Sbjct: 526 AKNDKNFYDQEGRNFIHKVMERHYFYLLEASIELAEEFGNAPWMHKTKWPDGWLPIDGYK 585

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAPTATIANICGVSQSIDPSY 786
              +       +      W+  +K +K  G    S   A  P  + +   G +     + 
Sbjct: 586 KTVDEI----CDEPLHYDWEAKRKIIKERGGHAFSTLGANMPAESSSLKSGTTNGPYATR 641

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
                K N    F  V         + DL+ +A   ++                      
Sbjct: 642 DIDMKKRNDQDAFDYVVP-------ESDLYYDAYARNI---------------------- 672

Query: 847 TAFEIDPMWLIES-ASRRQKWIDQAQSLNLY-----LDEPSGKKLDFIYRQAWLMGLKTT 900
            A+ ID +  I       QK+ DQ  S +++     +++     L   +      G+ T 
Sbjct: 673 -AWNID-IEHIAMKYGIIQKFTDQTTSADVWYTVQGVEKIDSHDLLRGFFALNYYGVPTR 730

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
           YYL +         T KG     N   V             + C
Sbjct: 731 YYLNTL--------TGKGNSLNDNKAIVIGSEVIEEGEKECAGC 766


>gi|327314698|ref|YP_004330135.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola F0289]
 gi|326945704|gb|AEA21589.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella denticola F0289]
          Length = 865

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 134/706 (18%), Positives = 264/706 (37%), Gaps = 97/706 (13%)

Query: 294 EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
           + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A E ++LL  F
Sbjct: 23  DELAARVWVNKYAMKDSLGNIYEKSPEQMHWRIADEIARIEHKYKNPLAAQEVFDLLDHF 82

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +       H Q   LS+CF+  +    D    I    +E   L K  GG+G+D
Sbjct: 83  RYIIPAGSPMTGIGNHHQVASLSNCFVIGLDGDADSYGAIMRIDEEQVQLMKRHGGVGHD 142

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 143 MSQIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSEAFI 201

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +     +  +    N +  I D FM+    +  +    P +                 
Sbjct: 202 DAKM----EEGKVTGANVSVKITDEFMQAAVADRPFVQQFPIDARAPM------------ 245

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                       V + +SA  LW K++   +++  P + F D     S       +    
Sbjct: 246 ------------VSKTVSAKTLWGKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFQT 293

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + T             C L S+NL ++       +  FD+D  +   + A R++D+++D+
Sbjct: 294 VSTNPCGEIPLCPYDSCRLLSLNLYSYVVDPFTDHAHFDFDLFSRHAQLAQRIMDDIVDL 353

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                     H  EK ++ +   R  G+G+      +  + + Y
Sbjct: 354 EMEKIDLIMEKIKHDPQSEEVKHAEYHLWEKIREKSGKGRRTGVGITAEGDMIAAMGLRY 413

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + EA + +      ++ +A  ASV +AQERGA     G    +       I  L E   
Sbjct: 414 GTQEATDFSVNVHRTLALNAYRASVTMAQERGA----LGIYDAKREENNPFINRLKEA-- 467

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                        +L + +K  G RN  C+ IAPT T + +   +  I+P +  +Y +  
Sbjct: 468 -----------DAKLYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRR 516

Query: 795 MSG-DFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIPDDLKK 843
               + T V+   V+E     ++  ++    ++ ++ +        +   I+ +      
Sbjct: 517 KVNPNDTDVHVDFVDEVGDSFEEYIVYHHKFLTWMEVNGIDTRKRYTQEEIDGLVKRSPY 576

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
             ATA ++D +  +      QKW+D + S+ + L      + ++ +Y +AW  G K    
Sbjct: 577 YKATANDVDWLMKVRMQGAVQKWVDHSISVTVNLPNQVDEELVNKLYVEAWRSGCKGCTI 636

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            R  S + V  S  K                   +    +      
Sbjct: 637 YRDGSRSGVMISVSKKDKKPEKPSDEEKAKDLNSAEEHHTHIMERP 682


>gi|257052366|ref|YP_003130199.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhabdus utahensis DSM 12940]
 gi|256691129|gb|ACV11466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorhabdus utahensis DSM 12940]
          Length = 1039

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 154/828 (18%), Positives = 285/828 (34%), Gaps = 114/828 (13%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL-YPEYFCRYIEEG 263
           +    +     +  + AR     LR++    + ++ +       + +   E       + 
Sbjct: 22  TLADRLTDNAYHNILPAR----YLRKDADGELVEQQEDLFERVGKNIALAEAVYEARNQD 77

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           V+  +  + +         ++L  E       +G          ++N    E        
Sbjct: 78  VEITVTPDQLKPDHPRR--DELAEEVFGKGTSIGDDAETTLSVYNVNKFAYETV------ 129

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           V    A      E+ A EF +L+ +  FM ++PTL N+G    QLS+CF+ +  DD+  I
Sbjct: 130 VPELPADVREHVEETATEFQDLMENLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDI 189

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
               +E A + +  GG+G  +  +R  G  +  T G + G I F++  +     + QGG 
Sbjct: 190 HQTAKEAAQVFQSGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGA 249

Query: 444 RKGAVCAYLETWHIDVEEFL------------------------------DLRKNTGDDR 473
           R+GA    +   H DV +F+                              +  +   DD 
Sbjct: 250 RRGAQMGVMRVSHPDVIQFIHAKNKDVSLARTLRLNDPDDFTHTSFSDALEEARELIDDD 309

Query: 474 RRTH------------DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
            R              + N +  I D FM  +  +  +T  +P        +   E +  
Sbjct: 310 GRVPEHLRNAVEGHLSNFNISVGITDEFMDALQNDEEFTFTNPRT--GDPHIVTAETKEL 367

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
           Y+ +    +  E+     I A  LW  ++    E G P + + +  N             
Sbjct: 368 YDMF-GLGEYVEVGEELSIPASELWDDIVEGAHENGEPGVIYLERANKEHSFDVEENSDH 426

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY----------------------- 618
             L T        EE   CNLG INL    A    D+                       
Sbjct: 427 RILATNPCGEQPLEEYEACNLGHINLSTLAAEGAPDWRVWSERHADDYDDFEAAVEAYLD 486

Query: 619 -----DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
                ++L   I  A R L+NV+ ++   +EK ++     R IGLG+MG       L + 
Sbjct: 487 EAIDVEELEYRIEMATRFLENVVTMSDFPVEKIEEKVRDMRKIGLGIMGLAQLFIQLGVK 546

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733
           Y S E   IA   M+ I+  +  AS ELA+ERG ++ ++ S +       +         
Sbjct: 547 YGSDEGDAIAGHLMQKINHDSKWASHELAEERGVFNDWEDSKYADPTEYREWF------- 599

Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793
            E  +   +    +          +RN N   IAPT T + +   +   +P Y   Y K+
Sbjct: 600 -EHYVGEDADDWAEG-------FPIRNHNTTTIAPTGTTSMVGNTTGGCEPVYNVAYYKN 651

Query: 794 N-----MSGDFTVVNSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLK 842
                         + + +  L++  +  E +  + +        DG +  +  +PD + 
Sbjct: 652 VSDDVQGDEMLVEFDDYFLRVLEENGIDVETVKEEAQEQMATNEFDG-VEGLSTVPDAIG 710

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
           ++  T  ++ P          Q  +D A S  +   ++ + +    ++   +  G K   
Sbjct: 711 ELFVTTGDLSPKQHASIQCTLQDGVDSAISKTVNAPNDSTIEDAKDVFEYIYEHGGKGVT 770

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
           Y R  + +    +T        +              G   +   D +
Sbjct: 771 YYRDGTRSKQVLTTRAENTDFADMDTEEVIAQIEAVFGGIEAFLDDED 818


>gi|333029143|ref|ZP_08457204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides coprosuis DSM 18011]
 gi|332739740|gb|EGJ70222.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides coprosuis DSM 18011]
          Length = 855

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 143/722 (19%), Positives = 270/722 (37%), Gaps = 114/722 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F+ + L  ++  ++Y +  + GS  E  P     R+A  LA  E +      + E + LL
Sbjct: 17  FSGDELAARVWVNKYAMKDSYGSIYEKSPADMHWRIANELARVEKKYPNPLTSEELFKLL 76

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  V    D   GI    +E   L K  GG+
Sbjct: 77  DKFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVEGPGDSYGGIIKMDEEQVQLMKRRGGV 136

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 137 GHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 195

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  I D FM     + G+    P                
Sbjct: 196 AFIDAKMTEG----KITGANVSVKIDDEFMTAAINDKGYIQQYPIYSETPTT-------- 243

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                            ++I A +LW K++   +++  P + F D     S       + 
Sbjct: 244 ----------------VKEIKAKSLWEKIVHNAWKSAEPGVLFWDTIIKESVPDCYADLG 287

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  N   D     +D     +  A R++D++
Sbjct: 288 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVENPFTDKAKFNFDLFKKHVALAQRIMDDI 347

Query: 636 IDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+    IE                        K  K     R  G+G+      L  L+
Sbjct: 348 IDLELEKIETILSKIKSDPENEEVKRTEYNLWQKIYKKTGQGRRTGVGITAEGDMLAALN 407

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA + ++E  + I+  A +ASV++A+ERGA+  +              I  L +
Sbjct: 408 LRYGTEEATDFSEEVHKTIALAAYNASVDMAKERGAFEVYDTDREANNP----FINRLKD 463

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                            L +++K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 464 A-------------DSALYEKMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYK 510

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  ++ +        +          
Sbjct: 511 RRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKFVTWMEAKGYNPAKRYTQ--------E 562

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+++ ++     AT+ ++D +  ++   R QKW+D + S+ + L ++ + + ++ +Y +
Sbjct: 563 EIDKLVEESPYNKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVNEELVNKLYVE 622

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI-PSSCTSDTEC 950
           AW  G K     R  S + V  +T    D +  +           S+   P      +E 
Sbjct: 623 AWKAGCKGCTVYRDGSRSGVLIATEPKKDKEKESKEALAEGLLIPSMPTNPEVLKRPSEL 682

Query: 951 EV 952
           E 
Sbjct: 683 EA 684


>gi|262384874|ref|ZP_06078006.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293590|gb|EEY81526.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 855

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 141/721 (19%), Positives = 264/721 (36%), Gaps = 115/721 (15%)

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDF-AFEYLGLQILYDRYFLHIN-GSRIE-M 316
           ++  +   ++      FD        K   D+   + L  ++  ++Y L    G+  E  
Sbjct: 1   MQSQINIIIVDRKTYTFD-----EAFKASLDYFTGDELAAKVWVNKYALKDAFGNIYEES 55

Query: 317 PQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSC 371
           P     R+A  +A  E +        E ++L   F ++    +         Q   LS+C
Sbjct: 56  PNDMHHRLASEIARVEKKYPNPLSEQELFDLFDHFRYIVPQGSPMTGIGNDYQIASLSNC 115

Query: 372 FLTTVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+  +    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF+
Sbjct: 116 FVIGLDGQADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFM 175

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +++         R+GA+   +   H D E F+D +   G    +    N +  I D 
Sbjct: 176 ERYSNSTR-EVAQDGRRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDD 230

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM        +    P +                               + I A  LW+K
Sbjct: 231 FMNAAVNGGTYKQQYPIDSDSPV------------------------YVKDIDASGLWKK 266

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++   +++  P + F D     S       +    + T             C L +INL 
Sbjct: 267 IIHNAWKSAEPGVLFWDTILRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLY 326

Query: 609 AHFANN-----QFDYDKLASTIRTAVRVLDNVIDIN------------------------ 639
           ++  N       FDYD     +  A R++D++ID+                         
Sbjct: 327 SYVVNPFTPDAYFDYDLFKKHVGLAQRIMDDIIDLESEKIEMILAKIDSDPESMEVRQTE 386

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
            H  EK ++     R  G+G+      +  L + Y + EA + A+   + ++  A  +SV
Sbjct: 387 RHLWEKIQRKTLQGRRTGVGITAEGDMIAALGLRYGTEEATDCAELIQKTLALAAYRSSV 446

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA+ERGA+  F                   E ++        R     L + +   G R
Sbjct: 447 MLAKERGAFEIFDAKR---------------EEKNPFINR--LREADPALYEDMLKYGRR 489

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF-------LVNE--- 809
           N  C+ IAPT T + +   +  I+P +  +Y +         VN          V+E   
Sbjct: 490 NIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRK------VNPNDSEARVDFVDETGD 543

Query: 810 -LKQRDLWDEAMISDLKYHDGSI------GNIERIPDDLKKIHATAFEIDPMWLIESASR 862
             ++  ++    ++ ++ +  S         +E +        AT+ ++D +  +    R
Sbjct: 544 AFEEYIVFHHKFVTWMQANGYSASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGR 603

Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            QKW+D + S+ + L ++ S + +D +Y +AW  G K     R  S + V  +T K    
Sbjct: 604 IQKWVDHSISVTINLPNDVSEELVDSLYVEAWRCGCKGCTVYRDGSRSGVLIATDKKKKK 663

Query: 922 K 922
           +
Sbjct: 664 E 664


>gi|265752122|ref|ZP_06087915.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236914|gb|EEZ22384.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 848

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 139/708 (19%), Positives = 261/708 (36%), Gaps = 113/708 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGAIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +    P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYPVDSDQPV--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                            ++I A ALW+K++   +++  P + F D               
Sbjct: 245 ---------------FTKEIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLG 289

Query: 577 GVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               S+N C EI L           NL S  +  +  +  FD+D     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + +A E +++  + I+  A  +SV +A+ERGA++ +      +       I  L E
Sbjct: 410 LRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYD----SEREKNNPFINRLKE 465

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                            L + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 466 A-------------DPNLYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  +           +          
Sbjct: 513 RRRKVNPNDPQTHVDFVDETGDAFEEYIVFHHKFVEWMTVNGYDPTKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           AW  G K     R  S + V  ST K    K   +P   P +      
Sbjct: 625 AWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKPPTVVEVRP 672


>gi|228471291|ref|ZP_04056097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas uenonis 60-3]
 gi|228306933|gb|EEK16031.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Porphyromonas uenonis 60-3]
          Length = 857

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 141/693 (20%), Positives = 256/693 (36%), Gaps = 114/693 (16%)

Query: 282 ANDLKYERDFAF-EYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK- 337
               +   D+   + L  ++   +Y L  + G+  E  P+    R+A  L   E      
Sbjct: 9   DEAYQATLDYFGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIARELVRIEHNYPNP 68

Query: 338 -RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTV---PDDLYGIFGALQEN 390
               E  +L+  F ++    +       + Q   LS+CF+  +   PD   GI    +E 
Sbjct: 69  LSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPDSYGGIIRIDEEQ 128

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+  
Sbjct: 129 VQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALML 187

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E F+D +   G    +    N +  I D FM+ V ++  +    P      
Sbjct: 188 TVSINHPDSESFIDAKMTEG----KVTGANVSVRIDDAFMQAVVEDKEYLQTYP------ 237

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                 E K  R I A  LW K++   + +  P + F D     
Sbjct: 238 ------------------VHSAEPKFTRTIQARQLWDKIIYNAWRSAEPGVLFWDTIIRE 279

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625
           S       +    + T             C L +INL ++  N       FD+D     +
Sbjct: 280 SVPDCYADLGFKTISTNPCGEIPLCPYDSCRLLAINLYSYVRNPFTAEASFDFDLFREHV 339

Query: 626 RTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLM 661
             A+R++D++ID+                              K K+     R  G+G+ 
Sbjct: 340 AKALRIMDDIIDLEAEKIDAILMKIASDTETEEVKAAERELWRKIKRKTLLGRRTGVGIT 399

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                L  + + Y S EA+  A+E  + +   A ++SVELA+ERGA+  +          
Sbjct: 400 AEGDMLAAMGMRYGSDEAISFAEEVQKTLCLSAYASSVELAKERGAFDLYD--------- 450

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                      +D   + R ++    +L + +K  G RN   + IAPT + + +   S  
Sbjct: 451 -------TEREKDNPFIQRIAKAD-PKLYEEMKKFGRRNIAMLTIAPTGSTSLMTQTSSG 502

Query: 782 IDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMIS 822
           I+P +  +Y +                        ++TV +   +  +K      E    
Sbjct: 503 IEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYTVYHHNFLTWMKINGYDPEK--- 559

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
              Y    +  +       K    TA ++D +  ++   R Q+W+D + S+ + L  + S
Sbjct: 560 --NYSHEELQELVAKSPYHKA---TANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDIS 614

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            + +  +Y +AW  G K     R  S + V  S
Sbjct: 615 QEMVATLYIEAWKAGCKGCTVYREGSRSGVLIS 647


>gi|237712420|ref|ZP_04542901.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726611|ref|ZP_04557092.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435137|gb|EEO45214.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453741|gb|EEO59462.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 848

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 139/708 (19%), Positives = 261/708 (36%), Gaps = 113/708 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGAIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +    P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYPVDSDQPV--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                            ++I A ALW+K++   +++  P + F D               
Sbjct: 245 ---------------FTKEIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLG 289

Query: 577 GVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               S+N C EI L           NL S  +  +  +  FD+D     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + +A E +++  + I+  A  +SV +A+ERGA++ +      +       I  L E
Sbjct: 410 LRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYD----SEREKNNPFINRLKE 465

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                            L + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 466 A-------------DPNLYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   V  +           +          
Sbjct: 513 RRRKVNPNDPQTHVDFVDETGDAFEEYIVFHHKFVEWMTVNGYDPTKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           AW  G K     R  S + V  ST K    K   +P   P +      
Sbjct: 625 AWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKPPTVVEVRP 672


>gi|310778932|ref|YP_003967265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ilyobacter polytropus DSM 2926]
 gi|309748255|gb|ADO82917.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ilyobacter polytropus DSM 2926]
          Length = 750

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 140/660 (21%), Positives = 261/660 (39%), Gaps = 94/660 (14%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
           G+ I   +Y    +G   E    +  RVA G    + ++     EF            + 
Sbjct: 17  GIDIWEKKY--KFDG---ETFVQWLDRVAGG--DPKVKEMIWKKEFIFAGRIL-----SN 64

Query: 357 TLFNSGTRHPQLSSCFLTTVPD-DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
              +   +    S+C++ T PD ++  IF   ++ A    Y GG G D + +R  G+ ++
Sbjct: 65  RGLHKVGKKITYSNCYVITPPDDNIESIFETAKKLARTFSYGGGCGVDISNLRPKGSEVN 124

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
            +   + G + F+ + N T   +     R+GA+   ++  H DVE+F+ ++     D  +
Sbjct: 125 NSAKHTTGAVSFMDLYNLTTD-IIGQKGRRGALMLSIDVNHPDVEDFIKVK----SDLNK 179

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
               N +  I D FMK V +   +                          E         
Sbjct: 180 IQKANISVRINDEFMKAVEKGDMFKT------------------------EFIVGDTGET 215

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSS 593
           + +K++A  L++++    +    P + F D  +  +            +N C E  L   
Sbjct: 216 ITKKVNARLLFKELARQNWNFAEPGVLFWDTISNWNLLSEDEEFEYAGTNPCAEEPLPPG 275

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNH 651
                 C LGSI L +      F++++LA  +R  V+ L++V+D  +  H +E+ + S  
Sbjct: 276 ----GSCLLGSIVLPSFIEGEVFNFERLAERVRDGVKALNDVLDEGLPLHPLEEQRDSVR 331

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG++G    L  + + Y SPE++E  D+  + I  +A+ AS  LA+E+G++  +
Sbjct: 332 DWRQIGLGILGLGDLLINMKLKYGSPESLEFCDKVSKTIVDNALRASALLAKEQGSFPKY 391

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           K        F  D+                     DE  + ++  G+RNS  + IAPT +
Sbjct: 392 KKDKVLASPFLKDNA-------------------SDETIELIEKYGLRNSQLLTIAPTGS 432

Query: 772 IANICGVSQSIDPSYQNLYVKSN--MSGD--FTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           I  +   S  I+P++   Y +    + G+  F  V + +  +    +  ++         
Sbjct: 433 IGTMLRTSTGIEPNFAFFYTRKTESLHGEDVFYKVFTPIAKDYMDENGIEDE-------- 484

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
                      +DL     TA  ++P   I+     Q+ ID + S  + L  + S ++++
Sbjct: 485 -----------NDLPDYFVTAQNLNPFDRIKMQGIWQRRIDASISSTINLVHKTSIEEVE 533

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
            +Y +AW  GLK     R+  A     S +K     L             ++  P +   
Sbjct: 534 DLYIEAWKQGLKGMTIYRAGCAREGILS-VKSEPKTLELPRGEMKPIEEDTIYYPKALKI 592


>gi|304382861|ref|ZP_07365344.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973]
 gi|304336046|gb|EFM02293.1| ribonucleoside-diphosphate reductase [Prevotella marshii DSM 16973]
          Length = 855

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 137/743 (18%), Positives = 271/743 (36%), Gaps = 117/743 (15%)

Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVA 325
           + + +   +D  Y A+   +E D        ++  ++Y +  + G+  E  P+    R+A
Sbjct: 1   MENNNTYSYDEAYKASLKYFEGDEL----AARVWVNKYAMKDSFGNIYEQSPENMHWRIA 56

Query: 326 MGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP--- 377
             +A  E +     +A E ++LL  F ++    +       + Q   LS+CF+  +    
Sbjct: 57  NEIARIENKYANPLKAEEVFSLLDHFRYIVPAGSPMTGIGNNHQVASLSNCFVIGLDGDA 116

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D    I    +E   L K  GG+G+D + VR  G+ ++ +   S G++PF++  +++   
Sbjct: 117 DSYGAIMRIDEEQVQLMKRRGGVGHDLSHVRPKGSPVNNSALTSTGLVPFMERYSNSTR- 175

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
                 R+GA+   +   H D E F+D +   G    +    N +  + D FM+      
Sbjct: 176 EVAQDGRRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDEFMQAAIDGR 231

Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            +    P    +                          V ++I A +LW+K++   +++ 
Sbjct: 232 PYRQQFPIAGDNPM------------------------VSKEIDARSLWQKIVHNAWQSA 267

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FA 612
            P + F D     S       +    + T             C L SINL ++       
Sbjct: 268 EPGVLFWDTILRESIPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLSINLFSYVIDPFTD 327

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDIN------------------------CHTIEKAKK 648
           + +FD+D     +  A R++D+++D+                          H  EK K 
Sbjct: 328 HARFDFDTFKKHVGMAQRLMDDIVDLELEKIDAIMNKVQDDPQSGEVKGAEYHLWEKIKD 387

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
            +   R  G+G+      L  + + Y + EA   + E  + ++  A  +S  +A+ERGA+
Sbjct: 388 KSSKGRRTGVGITAEGDMLAAMGLRYGTEEATAFSVEVHKTLALSAYRSSAIMAKERGAF 447

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           + +                   E ++   +    +    EL + +   G RN  C+ IAP
Sbjct: 448 AVYDAQR---------------EAKNPFVLR--LKEADPELYELMVKYGRRNIACLTIAP 490

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDFTVVNSFLVNE 809
           T T + +   +  I+P +  +Y +                        ++ V +   +  
Sbjct: 491 TGTTSLMTQTTSGIEPVFMPVYKRRRKVNPSDTNVHIDFVDEVGDSFEEYIVYHPKFMQW 550

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +K      E   +           I+ +        ATA ++D +  +      QKW+D 
Sbjct: 551 MKTNGYDTEKRYTQ--------DEIDALVAKSPYNKATANDVDWLMKVRMQGAIQKWVDH 602

Query: 870 AQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
           + S+ + L ++     ++ +Y +AW  G K     R  S   V  S  +    K      
Sbjct: 603 SISVTVNLPNDVDEALVNRLYVEAWRSGCKGCTIYRDGSRAGVMISVSEKDKKKEKKEDE 662

Query: 929 TDPNSSTHSLGIPSSCTSDTECE 951
            +         +      + EC+
Sbjct: 663 HEELPPCRQPEVTEVRPKELECD 685


>gi|150006676|ref|YP_001301419.1| putative ribonucleoside reductase [Parabacteroides distasonis ATCC
           8503]
 gi|255016563|ref|ZP_05288689.1| putative ribonucleoside reductase [Bacteroides sp. 2_1_7]
 gi|256842199|ref|ZP_05547703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parabacteroides sp. D13]
 gi|298377646|ref|ZP_06987597.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_19]
 gi|149935100|gb|ABR41797.1| putative ribonucleoside reductase [Parabacteroides distasonis ATCC
           8503]
 gi|256736083|gb|EEU49413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parabacteroides sp. D13]
 gi|298265349|gb|EFI07011.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 3_1_19]
          Length = 846

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 139/699 (19%), Positives = 257/699 (36%), Gaps = 110/699 (15%)

Query: 282 ANDLKYERDF-AFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK- 337
               K   D+   + L  ++  ++Y L    G+  E  P     R+A  +A  E +    
Sbjct: 9   DEAFKASLDYFTGDELAAKVWVNKYALKDAFGNIYEESPNDMHHRLASEIARVEKKYPNP 68

Query: 338 -RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQEN 390
               E ++L   F ++    +         Q   LS+CF+  +    D    I    +E 
Sbjct: 69  LSEQELFDLFDHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGQADSYGAIIRIDEEQ 128

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+  
Sbjct: 129 VQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALML 187

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E F+D +   G    +    N +  I D FM        +    P +    
Sbjct: 188 SVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDDFMNAAVNGGTYKQQYPIDSDSP 243

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                      + I A  LW+K++   +++  P + F D     
Sbjct: 244 V------------------------YVKDIDASGLWKKIIHNAWKSAEPGVLFWDTILRE 279

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTI 625
           S       +    + T             C L +INL ++  N       FDYD     +
Sbjct: 280 SVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTPDAYFDYDLFKKHV 339

Query: 626 RTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLM 661
             A R++D++ID+                          H  EK ++     R  G+G+ 
Sbjct: 340 GLAQRIMDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWEKIQRKTLQGRRTGVGIT 399

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                +  L + Y + EA + A+   + ++  A  +SV LA+ERGA+  F          
Sbjct: 400 AEGDMIAALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKERGAFEIFDAKR------ 453

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    E ++        R     L + +   G RN  C+ IAPT T + +   +  
Sbjct: 454 ---------EEKNPFINR--LREADPALYEDMLKYGRRNIACLTIAPTGTTSLMTQTTSG 502

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSF-------LVNE----LKQRDLWDEAMISDLKYHDGS 830
           I+P +  +Y +         VN          V+E     ++  ++    ++ ++ +  S
Sbjct: 503 IEPVFLPVYKRRRK------VNPNDSEARVDFVDETGDAFEEYIVFHHKFVTWMQANGYS 556

Query: 831 I------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
                    +E +        AT+ ++D +  +    R QKW+D + S+ + L ++ S +
Sbjct: 557 ASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPNDVSEE 616

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            +D +Y +AW  G K     R  S + V  +T K    +
Sbjct: 617 LVDSLYVEAWRCGCKGCTVYRDGSRSGVLIATDKKKKKE 655


>gi|212691080|ref|ZP_03299208.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855]
 gi|212666312|gb|EEB26884.1| hypothetical protein BACDOR_00570 [Bacteroides dorei DSM 17855]
          Length = 848

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 138/708 (19%), Positives = 261/708 (36%), Gaps = 113/708 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E + +    A + Y LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIFEKSPEDMHWRIANEVARIEAKYKNGLNAQQLYELL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDFQVASLSNCFVIGIDGAADSYGAIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+       +    P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDAFMQAAVNGTPYKQQYPVDSDQPV--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                            ++I A ALW+K++   +++  P + F D               
Sbjct: 245 ---------------FTKEIDASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLG 289

Query: 577 GVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
               S+N C EI L           NL S  +  +  +  FD+D     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPYTRDAYFDFDLFKKHVALAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  K +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIEKIIAKIDSDPESEEVKEAEKHLWEKIYKKSGQGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + +A E +++  + I+  A  +SV +A+ERGA++ +      +       I  L E
Sbjct: 410 LRYGTEDATEFSEQVHKTIALEAYRSSVNMAKERGAFAIYD----SEREKNNPFINRLKE 465

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                            L + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 466 A-------------DPNLYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ + +   V  +           +          
Sbjct: 513 RRRKVNPNDPQTHVDFVDETGDAFEEYIIFHHKFVEWMTVNGYDPTKRYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
            I+ + +      AT+ ++D +  ++   R QKW+D + S+ + L ++     ++ +Y +
Sbjct: 565 EIDELVEKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNDVDEALVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           AW  G K     R  S + V  ST K    K   +P   P +      
Sbjct: 625 AWRSGCKGCTVYRDGSRSGVLLSTKKDKKDKKEELPPCKPPTVVEVRP 672


>gi|255037291|ref|YP_003087912.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dyadobacter fermentans DSM 18053]
 gi|254950047|gb|ACT94747.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dyadobacter fermentans DSM 18053]
          Length = 850

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 132/709 (18%), Positives = 249/709 (35%), Gaps = 113/709 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++  ++Y L  + G+  E  P     R+A  +A  E          E ++L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSFGAIYEATPDDMHHRIASEIARIEQRYPNPLSEAEIFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+       D   GI    QE   L K  GG+
Sbjct: 86  KDFKYIIPQGSPMTGIGNPYQIASLSNCFVIGNNGESDSYGGIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSPVKNSALTSTGIVPFMERFSNSTR-EVAQDGRRGALMLSVSIKHPDSE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     ++ +    N +  I D FM+ V     +    P +              
Sbjct: 205 SFIDAKM----EQGKVTGANVSVRIDDEFMQAVDAGTTYRQQYPIQSHTPTH-------- 252

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                            + I A ALW+K++   +++  P I F D     S       + 
Sbjct: 253 ----------------IKDIDATALWKKIVHNAWQSAEPGILFWDTIIRESVPDCYADLG 296

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  +   D     +D     I  A R++D++
Sbjct: 297 YQTISTNPCGEIPLCAYDSCRLLAINLFSYVEDPFTDKAKFNWDLFKKHIAAAQRMMDDI 356

Query: 636 IDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+    I+                          +   +  R  G+G+      L  L 
Sbjct: 357 IDLELEKIDAILQKIDEDPEDAEVKRVERNLWLNIQTKANEGRRTGIGITAEGDMLAALG 416

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S E    A E  + ++  A   SV  A+ERGA++ F      +       I  L E
Sbjct: 417 LRYGSDEGNAFAVEIHKTVALEAYRGSVHTAKERGAFTIFD----SEREKNNPFILRLKE 472

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                           +L   +   G RN   + IAPT T + +   +  I+P +  +Y 
Sbjct: 473 A-------------DAQLYYEMLEYGRRNIALLTIAPTGTTSLMSQTTSGIEPVFLPVYK 519

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +      ++   L      +          
Sbjct: 520 RRRKVNPNDKDVRVDFVDEVGDSWEEYVVFHHRFKQWMEVNGLDTSKNYAQ--------K 571

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891
           +++ +        AT+ ++D +  ++     Q+W+D + S+ + + ++ + + +   Y +
Sbjct: 572 DLDELVKKSPYYKATSNDVDYLKKVKMQGAIQQWVDHSISVTINMPNDVTEELVGECYME 631

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           AW  G K     R  S + V  S  +  +      P   P     +L  
Sbjct: 632 AWKAGCKGVTVYRDGSRSGVLISNTEKKEETQEGAPTPFPTERPQTLEA 680


>gi|260654687|ref|ZP_05860177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Jonquetella anthropi E3_33 E1]
 gi|260630703|gb|EEX48897.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Jonquetella anthropi E3_33 E1]
          Length = 881

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 135/641 (21%), Positives = 234/641 (36%), Gaps = 101/641 (15%)

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
             L    T + QL +CF+ +VPD + GIF A+++ A+++KY GG+G ++  +R  GA I 
Sbjct: 152 RRLAEGRTANQQLFACFVVSVPDSIEGIFDAVKDAAIISKYGGGVGANFGHLRESGAPIK 211

Query: 416 G-TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           G T GK+ G + F++  N     V QGG+R+ A+   L   H D+E F+D +     +  
Sbjct: 212 GGTGGKASGPVSFMETWNTMGSVVVQGGRRRAALMGMLPDNHPDIERFMDAKT----EDG 267

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           R    N +  + D  +    +   +                               R + 
Sbjct: 268 RLPYFNISVCVSDRLVNAAREGGDFP---------------------------LVSRVDG 300

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNS 592
           K    + A  LW K+ +  +  G P + F D     +  +     V+ S+N C E  L +
Sbjct: 301 KTAATVPAAQLWDKLCSNAWRRGDPGVFFIDRAGADNLLREDPEFVIESTNPCGEQPLPN 360

Query: 593 SSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  CNLGSINL A  A +      FD  +    +  ++  LD VID   + +E+  
Sbjct: 361 Y----TSCNLGSINLSAFVAPDGSGQLAFDEARFVDQVYRSMVYLDLVIDSCSYPLERIG 416

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +     R +GLGLMG   A     + Y SPE     D     ++  A+ A+V+     G 
Sbjct: 417 RRTRQIRPVGLGLMGLSDAAIASGLVYGSPEFSGFCDRLASVMAVCALLATVDSVDHLGK 476

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG---------- 757
                 S   +   P+    L  ++     M       +  +  R+K +G          
Sbjct: 477 EPFAASSAVVKLFAPLRD-ELGGDLFMSQTMETLDEEGFLRVVGRMKELGLPYTLCNTLQ 535

Query: 758 ----------------------------MRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                                       MRNS  ++IAPT +I+ +   S  I+P++   
Sbjct: 536 AAPGVLKRLEGGSPEELRRLLGAVLGGRMRNSRRLSIAPTGSISMLLDASAGIEPNFAWS 595

Query: 790 YVKSNMS--GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
           + +  M   G+      +    +                  G + +             T
Sbjct: 596 WNRKVMKSDGNGYETRQYFHRLVTDEG-------KRQLSAGGKLED---------PRFVT 639

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+++ P   +E      +++D   S  + L    +   +  +Y + + +G K     R  
Sbjct: 640 AYDLSPEGHVEVTGIFARYVDSGISKTVNLPSSATVDDVKAVYERCYDLGCKGITIYRDG 699

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
           S +       K  +    A     P   T   G     ++ 
Sbjct: 700 SRSEQPIEVSKPAEKAAPAPDGQTPVVKTAHTGRVKQRSTP 740


>gi|313159184|gb|EFR58557.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alistipes sp. HGB5]
          Length = 851

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 246/679 (36%), Gaps = 107/679 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
           F  + L   +   +Y L  + G+  E  P+    R+A  +   E          E + LL
Sbjct: 26  FEGDDLAATVWVSKYALKDSFGNIYETSPKQMHERIAAEIERIERKYPDPMSKEEVFELL 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLT---TVPDDLYGIFGALQENAMLAKYSGGL 400
             F ++            + Q   LS+CF+       D   GIF   +E   L K  GG+
Sbjct: 86  DHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   L   H D E
Sbjct: 146 GHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSLSIKHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D + +TG    +    N +  I D FM+       +    P                
Sbjct: 205 RFIDAKVDTG----KVTGANVSIKIDDEFMRAAIAGKKYHQQFP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                         K  + I A  LW K++   +++  P + F D               
Sbjct: 245 --------IKSDHPKYEQDIDAKKLWDKIIHNAWKSAEPGVLFWDTIIRESVPDCYADEG 296

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRV 631
            V  S+N C EI L         C L ++NLL++  N       F++D+  + +  A+R+
Sbjct: 297 FVTVSTNPCGEIPLCPY----DSCRLLAMNLLSYVDNPFTKEAKFNFDRFKAHVGKAMRM 352

Query: 632 LDNVIDINCHTIEKA------------------------KKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+    +E+                         +      R  GLG+      L
Sbjct: 353 MDDIIDLELEKVEQIIAKIAADPEDEEVRRVELELWKKIRTMAQKGRRTGLGITAEGDML 412

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y S EA+  A E  + ++  A  ASV +A +RGA+  +  S             
Sbjct: 413 AALGLLYGSDEAIAFAVEVQKTLAVEAYRASVRMAAQRGAFPIYDASKEKNNPMIARI-- 470

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                          R    EL   ++  G RN   + IAPT T + +   +  I+P ++
Sbjct: 471 ---------------READPELYAEMEKNGRRNIAMLTIAPTGTTSLMSQTTSGIEPVFR 515

Query: 788 NLYVKSNMSG-----DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            +Y +                     + ++ +++    +  L  +      +E I D   
Sbjct: 516 TVYKRRRKINPSDHDTHVDYEDETGEKFQEYNVYHHNFVKWLDANGYDTSKLETISDAEL 575

Query: 843 KIHA--------TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893
                       TA +ID +  ++     QKW+D + S+ + L +  S   +  +YR AW
Sbjct: 576 NEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSEALVADVYRTAW 635

Query: 894 LMGLKTTYYLRSRSATSVE 912
             G K     R      V 
Sbjct: 636 ECGCKGVTVYRDGCRDGVL 654


>gi|187926579|ref|YP_001892924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12J]
 gi|241666090|ref|YP_002984449.1| ribonucleotide reductase-like protein [Ralstonia pickettii 12D]
 gi|187728333|gb|ACD29497.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12J]
 gi|240868117|gb|ACS65777.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia pickettii 12D]
          Length = 605

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 123/605 (20%), Positives = 205/605 (33%), Gaps = 75/605 (12%)

Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             F RVA  LA  E   ++      FY  L                  H  + +CF+  +
Sbjct: 34  DVFKRVAHALAAAEQPDQRAHFTRLFYANLLQGAIGAGRIMANAGSANHGTMVNCFVHPI 93

Query: 377 PDDLYGIFGAL------QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                 +  A              +  GG+G D++ +    A    +N  +  V   L  
Sbjct: 94  GASEQSVADASDVERALHAAQRTLQMGGGVGYDFSVIAPADAEQATSNSGTGSVCAVLDS 153

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +           R GA  A L   H D+  F+  ++     RRR    N +  + D FM
Sbjct: 154 FDRVCATQALVNTRGGAQMAVLRCDHPDLATFITAKRG----RRRWATFNLSVAVTDAFM 209

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V  +  W L      +      G             A       +  + A  LW  + 
Sbjct: 210 RAVADDGLWCLQHRAVPNAQRLATG-----------AHALSNGKWCYAVVPARQLWNMIA 258

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
                +  P + F D  N  +    +  + ++N C E  L         C LG I++   
Sbjct: 259 EAAHHSAEPGLLFIDTINAANDLAEIETIAATNPCGEQPLPP----WGSCVLGPIDVSRW 314

Query: 611 FANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                       FD+  L+  +R  VR+LDN I+I    + +        R IG+G+ G 
Sbjct: 315 VQWPFGMGGQPLFDFVGLSRAVRVQVRMLDNAIEITRWPLPEHMHEAQAKRRIGVGVTGL 374

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
             AL ++ +PY +P A   A +    +   A +AS  LA ERG Y  F        + P 
Sbjct: 375 ADALTMMCLPYDAPAARCFAAQIGRCLRDSAYAASAALACERGPYPLFSPER---SLAPG 431

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQS 781
                L +                 + + V   G+RNS+ +++APT +++   G   S  
Sbjct: 432 HFSAALPK----------------AVCEAVAKHGLRNSHLLSLAPTGSVSLAFGDNCSSG 475

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH-DGSIGNIERIPDD 840
           I+P++  +Y +             L           E     L     G    +      
Sbjct: 476 IEPAFDWVYQRRVR---IQHRAPQLYR--------TENRAYRLFRALYGQRAALPG---- 520

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
                 TA +ID +  +   +  Q ++D + S  + L    S  ++  +   AW + LK 
Sbjct: 521 ---YFVTARQIDGLDHLRMVATLQPFVDASISKTVLLPCSASCAQVAALLFHAWQLRLKG 577

Query: 900 TYYLR 904
               R
Sbjct: 578 ITIFR 582


>gi|15615373|ref|NP_243676.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           halodurans C-125]
 gi|10175431|dbj|BAB06529.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus
           halodurans C-125]
          Length = 852

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 158/742 (21%), Positives = 267/742 (35%), Gaps = 136/742 (18%)

Query: 313 RIEMPQAFF-----MRVAMGLAL---KETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GT 363
            IE P   F      R A GLA     E ++++    FY  L + +F+ +   L+ +   
Sbjct: 121 VIEKPLEIFYEQIAKRNATGLAAVETTEEKRQQSFERFYEELVNMNFVPAGRVLYGAGAK 180

Query: 364 RHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
                 +C++   V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 181 TDVTYFNCYVMPFVKDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 240

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGD 471
           G + +L         V QGG R+GA    L  WH DV EF+            L +NT D
Sbjct: 241 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDVLEFIISKMQNPRILRYLLENTDD 300

Query: 472 DRRRTHDMNTANWIP----DLFM-------------------------KRVTQNAGWTLF 502
           D+ R    +   + P    +  M                         +++     +T+ 
Sbjct: 301 DQIRKLVKDKLKFTPLSQLEEAMYQGIVNYKSIPGMGGFDAKVIKEAEEKLRIGGTYTVN 360

Query: 503 SPD----------------EVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAV- 543
           +PD                E  D  D Y   F     Y   E      E      +    
Sbjct: 361 NPDFLTGANISVCLTKEFMEAVDNDDWYALRFPDVENYTEEEMDIYNREWSNVGDVREWE 420

Query: 544 ---------------ALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTE 587
                           LW  +      +  P I F D  N  +  + +   V ++N C E
Sbjct: 421 ERGFPVKTYRMIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGE 480

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             L       +VCNL +INL       +   D+ KL  T+   VR+ DNVID   + +E+
Sbjct: 481 QPLAPY----SVCNLAAINLAEMANKQEKTVDFKKLKQTVEVGVRMQDNVIDATPYFLEE 536

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
             K     R +GLG+MG    L      Y S E  ++ D+  E I+  A   S+ELA+E+
Sbjct: 537 NTKQAKGERRVGLGVMGLHDLLIYTETVYGSEEGNKLVDQIFETIATTAYRTSIELAKEK 596

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G++    G           +     ++R         +   +++++ V   G+RNS+ + 
Sbjct: 597 GSFPFLVG----------QTDEETKQLRQRFIGTGYMKKMPEDIRQGVLEYGIRNSHLLT 646

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE-LKQRDLWDEAMISDL 824
           +APT +   + GVS  ++P +   Y +S   G F  V + +V E L+     DE      
Sbjct: 647 VAPTGSTGTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAEIVQEYLRAHPEADE------ 700

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
                         + L +   +  E+ P    +     Q+W+D + S  +      + +
Sbjct: 701 --------------NHLPEWFISTMELAPEAHADVQCIIQRWVDSSLSKTVNAPRGYTVE 746

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH------- 936
           ++  +Y + +  G K        S    +  +LK  +  L+   + +   S         
Sbjct: 747 QVQAVYERLYRGGAKGGTVYVDGSR-DAQVLSLKAEENTLDEDVLAETEQSEKKIVLVDT 805

Query: 937 -----SLGIPSSCTSDTECEVC 953
                +  +         C VC
Sbjct: 806 IQDVRTTDVTIGSEVGDTCPVC 827


>gi|255535746|ref|YP_003096117.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341942|gb|ACU08055.1| Ribonucleotide reductase of class II (coenzyme B12-dependent)
           [Flavobacteriaceae bacterium 3519-10]
          Length = 848

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 135/711 (18%), Positives = 263/711 (36%), Gaps = 101/711 (14%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEF--YNLL 346
           F  + L  ++   +Y L   +G+  E  P     R+A  +A  E        E   ++L+
Sbjct: 26  FNGDDLAAKVWVSKYALKDSDGNIYERTPDDMHRRIASEIARIEANYPNALSETEVFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLT---TVPDDLYGIFGALQENAMLAKYSGGL 400
            +F ++    +         Q   LS+CF+    T  D    I    QE   L K  GG+
Sbjct: 86  KNFKYIIPQGSPMTGIGNDFQIASLSNCFVIGSGTQSDSYGSIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D +
Sbjct: 146 GHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSVNHPDSD 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F++ +     ++ +    N +  I D FM+ V  N  +T   P    D           
Sbjct: 205 DFVNAKL----EQGKITGANISVRIDDEFMQAVVGNENYTQKYPIHSEDP---------- 250

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                         K  ++I A  LW K++   +++  P I F D     S       + 
Sbjct: 251 --------------KFRKEIKATELWDKIIHNAWKSAEPGILFWDTIIRESLPDCYADLG 296

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L ++NL ++  N       F+++     +  A R++D++
Sbjct: 297 YETVSTNPCGEIPLCPYDSCRLLAVNLFSYVENPFTKKAKFNFELFKKHVGYAQRMMDDI 356

Query: 636 IDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                                +K     R  G+G+      L  L+
Sbjct: 357 IDLEIEKIDAILDKIDSDPESSEIKATEKNLWNNIRKKTIEGRRTGVGITAEGDMLAALN 416

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           I Y S E  E +    + ++  A  +SVE+A+ERGA++ +                    
Sbjct: 417 IQYGSKEGNEFSTLVHKTLALAAYRSSVEMAKERGAFAIYDA----------------KR 460

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +   + R  +    +L + ++  G RN   + IAPT + + +   +  I+P +  +Y 
Sbjct: 461 EENNPFVQRI-KDADPQLFEDLQKFGRRNIALLTIAPTGSTSLMSQTTSGIEPVFLPVYK 519

Query: 792 KSNMSG-DFTVVNSFLVNELKQRDLWDEAMI-----SDLKYHDG-------SIGNIERIP 838
           +      +   V    V+E+     W+E ++           +G       S   I +I 
Sbjct: 520 RRRKVNPNDQDVRVDFVDEVGDH--WEEYIVFHHRFKQWMEVNGIDTDRKYSQDEINKII 577

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           +      AT+ ++D +  +E     QKW+D + S+ + + ++ + + ++ +Y +AW +G 
Sbjct: 578 ETSPYYKATSNDVDWLSKVEMQGAIQKWVDHSISVTINIPNDATEELVNQLYIKAWEVGC 637

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           K     R  S + V  S     +                   I     +  
Sbjct: 638 KGVTVYRDGSRSGVLISNEDKKEEVPANTAFPKKRPQILETDIVRFQNNKD 688


>gi|301308944|ref|ZP_07214889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 20_3]
 gi|300832970|gb|EFK63595.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 20_3]
          Length = 846

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 139/699 (19%), Positives = 257/699 (36%), Gaps = 110/699 (15%)

Query: 282 ANDLKYERDF-AFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEK- 337
               K   D+   + L  ++  ++Y L    G+  E  P     R+A  +A  E +    
Sbjct: 9   DEAFKASLDYFTGDELAAKVWVNKYALKDAFGNIYEESPNDMHHRLASEIARVEKKYPNP 68

Query: 338 -RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQEN 390
               E ++L   F ++    +         Q   LS+CF+  +    D    I    +E 
Sbjct: 69  LSEQELFDLFDHFRYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGQADSYGAIIRIDEEQ 128

Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450
             L K  GG+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+  
Sbjct: 129 VQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALML 187

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
            +   H D E F+D +   G    +    N +  I D FM        +    P +    
Sbjct: 188 SVSIKHPDSEAFIDAKMTEG----KVTGANVSVKIDDDFMNAAVNGGTYKQQYPIDSDSP 243

Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
                                      + I A  LW+K++   +++  P + F D     
Sbjct: 244 V------------------------YVKDIDASGLWKKIIHNAWKSAEPGVLFWDTILRE 279

Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTI 625
           S       +    + T             C L +INL ++  N       FDYD     +
Sbjct: 280 SVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTPDAYFDYDLFKKHV 339

Query: 626 RTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLGLM 661
             A R++D++ID+                          H  EK ++     R  G+G+ 
Sbjct: 340 GLAQRIMDDIIDLESEKIEMILAKIDSDPESMEVRQTERHLWEKIQRKTLQGRRTGVGIT 399

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
                +  L + Y + EA + A+   + ++  A  +SV LA+ERGA+  F          
Sbjct: 400 AEGDMIAALGLRYGTEEATDCAELIQKTLALAAYRSSVMLAKERGAFEIFDAKR------ 453

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
                    E ++        R     L + +   G RN  C+ IAPT T + +   +  
Sbjct: 454 ---------EEKNPFINR--LREADPVLYEDMLKYGRRNIACLTIAPTGTTSLMTQTTSG 502

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSF-------LVNE----LKQRDLWDEAMISDLKYHDGS 830
           I+P +  +Y +         VN          V+E     ++  ++    ++ ++ +  S
Sbjct: 503 IEPVFLPVYKRRRK------VNPNDSEARVDFVDETGDAFEEYIVFHHKFVTWMQANGYS 556

Query: 831 I------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
                    +E +        AT+ ++D +  +    R QKW+D + S+ + L ++ S +
Sbjct: 557 ASKKYTQEEVEELVAKSPYYKATSNDVDWLQKVRMQGRIQKWVDHSISVTINLPNDVSEE 616

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
            +D +Y +AW  G K     R  S + V  +T K    +
Sbjct: 617 LVDSLYVEAWRCGCKGCTVYRDGSRSGVLIATDKKKKKE 655


>gi|60683069|ref|YP_213213.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343]
 gi|60494503|emb|CAH09300.1| putative ribonucleoside reductase [Bacteroides fragilis NCTC 9343]
 gi|301164584|emb|CBW24143.1| putative ribonucleoside reductase [Bacteroides fragilis 638R]
          Length = 882

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 136/748 (18%), Positives = 270/748 (36%), Gaps = 117/748 (15%)

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSR 313
           +    I++     ++ + +  ++        +  R F  + L  ++  ++Y +  + G+ 
Sbjct: 22  HIYLLIKKSKTHCIVEKQIYSYE----EAFEESLRYFQGDELAARVWVNKYAVKDSFGNI 77

Query: 314 IE-MPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ--- 367
            E  P+    R+A  +A  E +      + + + L   F ++    +         Q   
Sbjct: 78  YEKSPKDMHWRLANEVARIEAKYPNALSSEQLFELFDHFKYIVPQGSPMTGIGNDYQVAS 137

Query: 368 LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           LS+CF+  +    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G+
Sbjct: 138 LSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGL 197

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +PF++  +++         R+GA+   +   H D E F+D +   G    +    N +  
Sbjct: 198 VPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVK 252

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM    +   +T   P +                               ++I A  
Sbjct: 253 LDDAFMSAAVEGRKYTQQYPIDSDHPTT------------------------VKEIEASN 288

Query: 545 LWRKMLTMLFETGHPWITFKDPCNI----RSPQQHVGVVHSSNLCTEITLNSSS-EETAV 599
           LW+K++   +++  P + F D                   S+N C EI L          
Sbjct: 289 LWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDSCRLLA 348

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT----------------- 642
            NL S  +     +  FD+D     +  A R++D++ID+                     
Sbjct: 349 INLYSYVVNPFTKDAYFDFDLFHKHVALAQRIMDDIIDLELEKIERIIEKIDQDPENEEV 408

Query: 643 -------IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
                   EK  K +   R  G+G+      L  L + Y + EA E +++  + ++  A 
Sbjct: 409 KHTERGLWEKIYKKSGQGRRTGVGITAEGDMLAALGMRYGTEEATEFSEKVHKAVALGAY 468

Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +SV++A+ERGA+  +                     ++   +NR  R     L + +K 
Sbjct: 469 RSSVDMAKERGAFDVYD----------------SEREKNNPFINR-LREADPALYEDMKK 511

Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS------------------- 796
            G RN  C+ IAPT T + +   +  I+P +  +Y +                       
Sbjct: 512 YGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVRVDFVDETGDAF 571

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
            ++ V +   V  ++          +           I+ +        AT+ ++D +  
Sbjct: 572 EEYIVFHHKFVTWMEANGYDPAKRYTQ--------EEIDELVAKSPYYKATSNDVDWLMK 623

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
           +    + QKW+D + S+ + L ++   + ++ +Y +AW  G K     R  S + V  S 
Sbjct: 624 VRMQGKIQKWVDHSISVTINLPNDVDEELVNRLYVEAWKSGCKGCTVYRDGSRSGVLISA 683

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
               D K    P   P        +  +
Sbjct: 684 KSDKDKKEELPPCKPPTVVEVRPTVLEA 711


>gi|257468300|ref|ZP_05632396.1| putative ribonucleotide-diphosphate reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062578|ref|ZP_07927063.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688254|gb|EFS25089.1| ribonucleotide-diphosphate reductase subunit alpha [Fusobacterium
           ulcerans ATCC 49185]
          Length = 753

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 144/660 (21%), Positives = 265/660 (40%), Gaps = 93/660 (14%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
             LG+ I   +Y    +G   E    +  RV+ G             E   ++++  F+ 
Sbjct: 11  NKLGMDIWEKKY--KYDG---ETFNEWLERVSGG-----------DQELKEMIANKEFIF 54

Query: 354 STPTLFNSGTRH----PQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +   L N G          S+C++     D+L  IF   ++ A    Y GG G D + +R
Sbjct: 55  AGRILSNRGLYKLGRKITYSNCYVIAPPEDNLESIFDTAKKLARTYSYGGGCGVDISKLR 114

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G+ ++ +   + G I F+++ N T   +     R+GA+   ++  H DV EF+ ++  
Sbjct: 115 PKGSEVNNSAKYTTGSISFMELYNLTTD-IIGQKGRRGALMISIDVNHPDVSEFISIK-- 171

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
              D  +    N +  +   FMK V +   +                          E  
Sbjct: 172 --SDLNKIQKANISVRVDANFMKAVVEGLQFVT------------------------EFL 205

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCT 586
            +     + ++I A  L++++    ++   P + F D  +  +            +N C 
Sbjct: 206 VEDTGEVISKEIDARKLFKELARQNWKFAEPGVLFWDRISKWNLLSEDEEFEYAGTNPCA 265

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--INCHTIE 644
           E  L +       C LGS+ L       +FD+D+LA+ ++ +V+ L++V+D  +  H +E
Sbjct: 266 EEPLPAG----GSCLLGSLILPTFVEGKEFDFDRLANAVQKSVKALNDVLDEGLPLHPLE 321

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           + ++S    R IGLG++G    L  L + Y SPE++E  D   + I  +A+ AS  LA+E
Sbjct: 322 EQRESVRDWRQIGLGILGVGDLLIKLGMKYGSPESLEFCDNIAKVIIDNALKASALLAKE 381

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
            GAY                       ++ E  +   S     E  + ++  G+RNS  +
Sbjct: 382 SGAYPK---------------YKADKVLKSEFLLENAS----IETLQLIEEYGLRNSQLL 422

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            IAPT +I  +   S  I+P++   Y++                 L   D++ +  I   
Sbjct: 423 TIAPTGSIGTMLETSTGIEPNFAFSYIRKT-------------ESLHGEDVFYKVFIPIA 469

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
           K +     N     DDL +   TA  ++P   I+     QK ID + S  + L ++ S +
Sbjct: 470 KKYM--EENEIDDEDDLPEYFVTAQNLNPYDRIKMQGIWQKRIDASISSTINLVNKVSVE 527

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           +++ +Y +AW  GLK     R+        +    V+ K+  + +            P +
Sbjct: 528 EVEKLYLEAWKNGLKGMTIYRAGCDREGILTVTPKVEEKIEELKLPAMPRGELKPIAPDT 587


>gi|325104223|ref|YP_004273877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pedobacter saltans DSM 12145]
 gi|324973071|gb|ADY52055.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pedobacter saltans DSM 12145]
          Length = 854

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 131/675 (19%), Positives = 252/675 (37%), Gaps = 101/675 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVE--FYNLL 346
           F  + L  ++  ++Y L  + G+  E  P     R+A  +A  E++      E   + L+
Sbjct: 26  FKGDDLAARVWVNKYALKDSSGNLYEKTPDDMHRRIASEIARIESKYPNPLSESDVFELI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
            +F ++    +         Q   LS+CF+       D   GI    QE   L K  GG+
Sbjct: 86  KNFKYIIPQGSPMTGIGNPFQIASLSNCFVIGNDGESDSYGGIMKIDQEQIQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIEHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     ++ +    N +  I D FM+ V +++ +    P                
Sbjct: 205 RFIDAKM----EQGKVTGANVSVRITDAFMQAVEKDSDFVQRYP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC-NIRSPQQHVGVV 579
                       +     KI A  LW K++   + +  P I F D   N   P  +  + 
Sbjct: 245 --------IGAEKPIFSNKIKAKELWDKIVHNAWRSAEPGILFWDTIINESVPDCYADLG 296

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634
           + +                 C L +INL ++  N       F+++     I  A R++D+
Sbjct: 297 YKTVSTNPCGEIP-LCPYDSCRLLAINLYSYVENPYTKAASFNFELFKKHIGFAQRIMDD 355

Query: 635 VIDINCHTIE------------------------KAKKSNHTHRAIGLGLMGFQSALHLL 670
           +ID+    +                           ++     R  G+G+      L  L
Sbjct: 356 IIDLELEKVNDILAKIDSDPEEDETKRVEKNLWLNIRRKAEEGRRTGIGITAEGDMLAAL 415

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y S E +  + +  + I+  A  +SV  A+ERGA+  F                   
Sbjct: 416 GLRYGSDEGISFSVDIHKLIAIEAYRSSVTAAKERGAFPIFDA----------------E 459

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
             ++   + R +     +L   +   G RN   + IAPT T + +   +  I+P +  +Y
Sbjct: 460 REKNNPFIKRLAEADS-KLYYEMLEYGRRNIALLTIAPTGTTSLMSQTTSGIEPVFMPVY 518

Query: 791 VKSNMSG-DFTVVNSFLVNELKQR-----------DLWDEAMISDLKYHDGSIGNIERIP 838
            +      +   V    V+E+                W E    D++ +  S   ++ + 
Sbjct: 519 KRRRKVNPNDKNVRIDFVDEVGDSWEEYVVFHHGFKTWMETNGFDIERNY-SNEELDELV 577

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
                  AT+ ++D +  +      QKW+D + S+ + + ++ S + +  +Y +AW  G 
Sbjct: 578 KQSPYYKATSNDVDYLKKVHMQGAIQKWVDHSISVTINMPNDVSEELVGALYMEAWKSGC 637

Query: 898 KTTYYLRSRSATSVE 912
           K     R  S + V 
Sbjct: 638 KGVTVYRDGSRSGVL 652


>gi|260888488|ref|ZP_05899751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|330838203|ref|YP_004412783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|260861685|gb|EEX76185.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
 gi|329745967|gb|AEB99323.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Selenomonas sputigena ATCC 35185]
          Length = 749

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 151/677 (22%), Positives = 260/677 (38%), Gaps = 94/677 (13%)

Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353
             +G  IL  +Y+          P  F  RVA G+   E  ++ RA      L       
Sbjct: 7   TEIGRSILQAKYYHAGETE----PHEFIERVA-GIFSPEVREKMRA-----YLEDGALSP 56

Query: 354 STPTLFNSG---TRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
           +  TL+ +G        LS+C++   P DD+  IF   Q+ A +  Y GG+G + + +R 
Sbjct: 57  AGRTLYAAGAKGKFKSSLSNCYIMPSPTDDIESIFTVNQQIAKIFSYGGGIGVNISGLRP 116

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + ++     S G + FLK+ N T   ++Q G R+GA+   L++ H D+ EFL +++  
Sbjct: 117 KDSRVNNVARSSTGAVSFLKIFNTTGEVISQNG-RRGAMLVALDSEHPDIYEFLHMKQ-- 173

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
             +  +   MN +    D FM+ V  +A                        YE      
Sbjct: 174 --ENEKLASMNLSILFSDAFMQAVIDDAE-----------------------YELTFDVE 208

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTE 587
             GE K+ R I A   + +     ++ G P   FKD  N  +         +  +N C E
Sbjct: 209 ATGE-KIRRTIRAAEFFDEYCQTQWDWGDPGALFKDRLNDYTLLSGYDEYKIEVTNPCGE 267

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINC-- 640
              N+ +     CNL S+NL +   +   D      ++  + I+TAVR LD V+D     
Sbjct: 268 FGGNAYN----SCNLMSLNLYSFIEDKFGDAPHIAEEEFRAAIQTAVRALDEVLDYGFDT 323

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
             +E+ ++     R++GLGL G   A   + + Y S E+ +     +  +   A   S  
Sbjct: 324 QPLEENRQCIRDWRSVGLGLFGVADAFVAMKLAYGSRESCDFIQGVLRTMFTEAARTSAA 383

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E+GA+                      E   +  + +       E+   +K  G+RN
Sbjct: 384 LAKEKGAFG-----------------KYDWEKTKKSPLIQRLAEEAPEVYAEIKEYGLRN 426

Query: 761 SNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSN-----MSGDFTVVNSFLVNELKQRD 814
              ++IAPT TI+ + GV S   +P YQ  Y ++       SG F V    + + L    
Sbjct: 427 GTLLSIAPTGTISLLMGVFSGGCEPLYQISYERTTHKMEEGSGSFRVYAHSVSDLLDYHK 486

Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874
           L  +    D+K           + +        + ++  +  +E  +  QK++D + S  
Sbjct: 487 LPHDLTNEDIKKR------FPWVIE--------SHDVPYLHRVELQAAMQKYVDNSISST 532

Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
           + L    +   +  IY  AW    K     R            +  + ++    V     
Sbjct: 533 VNLKHAATPADIRNIYLAAWKSRCKGITVFRDGCKRGNILGVKEAAEQEIAYDTVRPRRR 592

Query: 934 STHSLGIPSSCTSDTEC 950
              +     +    T C
Sbjct: 593 DNIARLEGVTLLRHTSC 609


>gi|313149069|ref|ZP_07811262.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137836|gb|EFR55196.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 847

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 132/714 (18%), Positives = 259/714 (36%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + + + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           L   F ++    +         Q   LS+CF+  +    D    I    +E   L K  G
Sbjct: 77  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMAAAVEGRKYTQQYPIDSDHPTT------ 245

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQ 574
                              ++I A  LW+K++   +++  P + F D             
Sbjct: 246 ------------------VKEIDASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 575 HVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                 S+N C EI L           NL S  +     +  FD++     +  A R++D
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTKDAYFDFELFHKHVALAQRIMD 347

Query: 634 NVIDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMEKIDLDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA + +++  + ++  A  +SV++A+ERGA+  +                  
Sbjct: 408 LGMRYGTEEATDFSEKVHKAVALGAYRSSVDMAKERGAFDVYD----------------T 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R     L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPALYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 511 YKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPAKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              ++ +        AT+ ++D +  +    + QKW+D + S+ + L ++   + ++ +Y
Sbjct: 564 -EEVDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  S     D K    P   P        +  +
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPPTVVEVRPPVLEA 676


>gi|255011258|ref|ZP_05283384.1| putative ribonucleoside reductase [Bacteroides fragilis 3_1_12]
          Length = 855

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 132/714 (18%), Positives = 259/714 (36%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + + + 
Sbjct: 25  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 84

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           L   F ++    +         Q   LS+CF+  +    D    I    +E   L K  G
Sbjct: 85  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 144

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 145 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 203

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P +            
Sbjct: 204 SEAFIDAKMTEG----KVTGANVSVKLDDAFMAAAVEGRKYTQQYPIDSDHPTT------ 253

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQ 574
                              ++I A  LW+K++   +++  P + F D             
Sbjct: 254 ------------------VKEIDASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 295

Query: 575 HVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                 S+N C EI L           NL S  +     +  FD++     +  A R++D
Sbjct: 296 LGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTKDAYFDFELFHKHVALAQRIMD 355

Query: 634 NVIDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 356 DIIDLELEKIERIMEKIDLDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGDMLAA 415

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA + +++  + ++  A  +SV++A+ERGA+  +                  
Sbjct: 416 LGMRYGTEEATDFSEKVHKAVALGAYRSSVDMAKERGAFDVYD----------------T 459

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R     L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 460 EREKNNPFINR-LREADPALYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 518

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 519 YKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPAKRYTQ------- 571

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              ++ +        AT+ ++D +  +    + QKW+D + S+ + L ++   + ++ +Y
Sbjct: 572 -EEVDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLY 630

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  S     D K    P   P        +  +
Sbjct: 631 VEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPPTVVEVRPPVLEA 684


>gi|313125840|ref|YP_004036110.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halogeometricum borinquense DSM 11551]
 gi|312292205|gb|ADQ66665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halogeometricum borinquense DSM 11551]
          Length = 1044

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 137/678 (20%), Positives = 243/678 (35%), Gaps = 101/678 (14%)

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395
           + +   F +++ S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +
Sbjct: 142 KDKRETFQDMMESLSFMPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKEAAEVFQ 201

Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455
             GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   
Sbjct: 202 SGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVS 261

Query: 456 HIDVEEFL------------------------------DLRKNTGDDRRRTH-------- 477
           H DV +F+                              +  +   DD  R          
Sbjct: 262 HPDVIQFIHAKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDDEGRVPKHLRNAVE 321

Query: 478 ----DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
               + N +  I D FM+ +     +   +P    + H    +  +  YE +    +  E
Sbjct: 322 GHLSNFNISVGITDDFMEALENGEEFVFTNPRT-EEPHIATPET-KEIYEMF-GLGEHVE 378

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           +     + A  LW +M+   +E G P + + +  N +             L T       
Sbjct: 379 VGEVLSVPAEKLWDQMVDGAYENGEPGVIYLERVNKQHSFDVEKHPEHRILATNPCGEQP 438

Query: 594 SEETAVCNLGSINLLAHFA----------------------------NNQFDYDKLASTI 625
            EE   CNLG INL                                     D+++    I
Sbjct: 439 LEEYEACNLGHINLSTLADLDAPDWRVWQAENGDDYDSIEDAVDAFLEEAIDWEEFDHRI 498

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
               R L+NV+ ++   +EK ++     R IGLG+MG       L I Y S    E+A +
Sbjct: 499 DNGTRFLENVVTMSDFPVEKIEEKVRAMRKIGLGVMGLAQLYIQLGIRYGSDSGNEVARQ 558

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
            M  I+  +  AS ELA+ERG +  +  S +              E R+    +      
Sbjct: 559 LMTHINHQSKWASHELAEERGTFEDWDDSKFADPT----------EYREWFEHHTGLDAD 608

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFT 800
             E    ++     N N   IAPT T + +   +   +P Y   Y K+            
Sbjct: 609 EWEDGFPIR-----NHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLV 663

Query: 801 VVNSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIHATAFEIDPM 854
             + + +  L+  D+  +A+  + +        DG +  +E +P+ + ++     ++   
Sbjct: 664 EFDDYFLRVLEANDIDVDAVKEEAQEQMANNEFDG-VEGLETVPNAIGELFVVTSDLSGK 722

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913
                    QK +D A S         S + +D +YR  +  G K     R  + +    
Sbjct: 723 DHAAVQCACQKGVDSAISKTCNFPNSASKEDMDEVYRYIYNNGGKGVTVYRDGTRSKQVL 782

Query: 914 STLKGVDGKLNAVPVTDP 931
           +T        +     + 
Sbjct: 783 TTRAKNTDFADEGEAAET 800


>gi|305665964|ref|YP_003862251.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170]
 gi|88710739|gb|EAR02971.1| putative ribonucleoside reductase [Maribacter sp. HTCC2170]
          Length = 847

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 146/701 (20%), Positives = 258/701 (36%), Gaps = 103/701 (14%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  Q+  ++Y L    G+  EM P     R+A  ++  E +        E Y+L+
Sbjct: 26  FKGDDLAAQVWINKYALKDSEGNLYEMNPDDMHYRIAKEISRVEQKYPNPLTEKEVYDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
            +F ++    +         Q   LS+CF+       D   GI    QE   L K  GG+
Sbjct: 86  KNFKYIVPQGSPMAGIGNPYQIASLSNCFVIGTDGKSDSYGGIMKIDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSAVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSINHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FMK V  N  +T   P                
Sbjct: 205 DFIDAKM----EQGKVTGANVSVRIDDDFMKAVDNNTNYTQKFP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC-NIRSPQQHVGVV 579
                         +   +I A  LW K++   +++  P I F D   N   P  +  + 
Sbjct: 245 --------IHSDNPRFTNEIEANKLWDKIVHNAWKSAEPGILFWDTIINESVPDCYADLG 296

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634
           + +                 C L +INL ++          F++      I  A R++D+
Sbjct: 297 YKTVSTNPCGEIP-LCPYDSCRLLAINLFSYVDQPFTKDASFNFPLFKKHIALAQRIMDD 355

Query: 635 VIDINCHTI------------------------EKAKKSNHTHRAIGLGLMGFQSALHLL 670
           +ID+    +                        E  K+     R  G+G+      L  L
Sbjct: 356 IIDLELEKVDGILEKIMADPELEETKSVEISLWENIKEKAIKGRRTGIGITAEGDMLAAL 415

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730
            + Y S EA E + E  + I+  A  ASV  A++RGA+  F                   
Sbjct: 416 GLRYGSEEANEFSIEVHKNIALEAYRASVHAAKDRGAFEIFDAER--------------- 460

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           E  +   +    +   ++L   +   G RN   + IAPT T + +   +  I+P +  +Y
Sbjct: 461 EKENPFILR--LKEADEKLYYEMLEYGRRNIALLTIAPTGTTSLMTQTTSGIEPVFLPVY 518

Query: 791 VKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI-----SDLKYHDG-------SIGNIERI 837
            +      +   VN   V+E+     W+E ++           +G       S   +++I
Sbjct: 519 KRRRKVNPNDKNVNVTFVDEVGDS--WEEYVVFHHRFRQWMEVNGIDTNKSYSQVELDKI 576

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-FIYRQAWLMG 896
                   AT+ ++D +  +      QKW+D + S+ + L     + L   +Y +AW  G
Sbjct: 577 VKKSPYYKATSNDVDWLSKVRLQGGVQKWVDHSISVTINLPNEVQEDLVGKLYLEAWKAG 636

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            K     R  S + V  S     +  L   P   P      
Sbjct: 637 CKGVTVYRDGSRSGVLISNEPEAEETLTHFPTKRPQVLEAD 677


>gi|260062376|ref|YP_003195456.1| putative ribonucleoside reductase [Robiginitalea biformata
           HTCC2501]
 gi|88783939|gb|EAR15110.1| putative ribonucleoside reductase [Robiginitalea biformata
           HTCC2501]
          Length = 850

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 138/710 (19%), Positives = 256/710 (36%), Gaps = 115/710 (16%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++   +Y L   +G+  E  P     R+A  +A  E +        E ++L+
Sbjct: 26  FKGDDLAARVWVTKYALKDSDGNIYERTPDDMHRRIAGEIARIEEKYPNPLGEEEIFDLI 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
            +F ++    +         Q   LS+CF+       D    I    QE   L K  GG+
Sbjct: 86  KNFKYIVPQGSPMAGIGNPYQIASLSNCFVIGTDGNSDSYGAIMKVDQEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 146 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSINHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FMK V  +  +T   P                
Sbjct: 205 DFIDAKM----EQGKVTGANVSVRIDDAFMKAVEMDGHYTQKFP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                       + K  +KI A  LW+K++   +++  P I F D     S       + 
Sbjct: 245 --------IHSSDPKFSKKIKASQLWKKIVHNAWKSAEPGILFWDTIIDESVPDCYADLG 296

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++          F++      I  A R++D++
Sbjct: 297 YKTVSTNPCGEIPLCPYDSCRLLAINLFSYVEEPFTEEASFNFPLFKKHIAAAQRIMDDI 356

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                             +  +K     R  G+G+      L  L 
Sbjct: 357 IDLELEKVDAILKKIEDDPELDETKMVEYKLWQNIRKKAEEGRRTGIGITAEGDMLAALG 416

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y S +A E + E  + I+  A  ASV+ A++RGA+  F                   E
Sbjct: 417 LRYGSKKANEFSVEVHKTIALEAYRASVQTARDRGAFGIFDAQR---------------E 461

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +   +    +   ++L   +   G RN   + IAPT T + +   +  I+P +  +Y 
Sbjct: 462 KENPFILR--LKEADEKLYYEMLEHGRRNIALLTIAPTGTTSLMTQTTSGIEPVFLPVYK 519

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--------------------DGSI 831
           +         VN    N+ + R  + + +    + +                    + S 
Sbjct: 520 RRRK------VNP---NDKEARVDFVDEVGDSWEEYLVFHHQFKAWMITKGYDTDKNYSQ 570

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
             I  I +      AT+ ++D +  +      QKW+D + S+ + L ++ S + +  +Y 
Sbjct: 571 EEINAIVEKSPYYKATSNDVDWLSKVRLQGEVQKWVDHSISVTINLPNDVSEELVGKLYL 630

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +AW  G K     R  S + V  S     +   N +              
Sbjct: 631 EAWKAGCKGVTVYRDGSRSGVLISNDDNKEDSQNTLTAFPTKRPQTLEAD 680


>gi|253566262|ref|ZP_04843716.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|265766962|ref|ZP_06094791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_16]
 gi|251945366|gb|EES85804.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           3_2_5]
 gi|263253339|gb|EEZ24815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroides sp. 2_1_16]
          Length = 847

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 135/714 (18%), Positives = 259/714 (36%), Gaps = 113/714 (15%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + + + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPKDMHWRLANEVARIEAKYPNALSSEQLFE 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           L   F ++    +         Q   LS+CF+  +    D    I    +E   L K  G
Sbjct: 77  LFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGIDGSADSYGAIIKIDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM    +   +T   P +            
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLDDAFMSAAVEGRKYTQQYPIDSDHPTT------ 245

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQ 574
                              ++I A  LW+K++   +++  P + F D             
Sbjct: 246 ------------------VKEIEASNLWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYAD 287

Query: 575 HVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
                 S+N C EI L           NL S  +     +  FD+D     +  A R++D
Sbjct: 288 LGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTKDAYFDFDLFHKHVALAQRIMD 347

Query: 634 NVIDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSALHL 669
           ++ID+                             EK  K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIIEKIDQDPENEEVKHTERGLWEKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E +++  + ++  A  +SV++A+ERGA+  +                  
Sbjct: 408 LGMRYGTEEATEFSEKVHKAVALGAYRSSVDMAKERGAFDVYD----------------S 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R     L + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPALYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 511 YKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFHHKFVTWMEANGYDPAKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889
              I+ +        AT+ ++D +  +    + QKW+D + S+ + L ++   + ++ +Y
Sbjct: 564 -EEIDELVAKSPYYKATSNDVDWLMKVRMQGKIQKWVDHSISVTINLPNDVDEELVNRLY 622

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +AW  G K     R  S + V  S     D K    P   P        +  +
Sbjct: 623 VEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKKEELPPCKPPTVVEVRPTVLEA 676


>gi|282858613|ref|ZP_06267775.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bivia JCVIHMP010]
 gi|282588617|gb|EFB93760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prevotella bivia JCVIHMP010]
          Length = 862

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 132/704 (18%), Positives = 266/704 (37%), Gaps = 97/704 (13%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      A E + LL
Sbjct: 20  FKGDELAARVWVNKYAMKDSFGNIYEQSPEDMHWRIANEVARIEKKYANPMGAAEVFELL 79

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +       + Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 80  DHFRYIIPAGSPMTGIGNNHQIASLSNCFVIGLEGNADSYGAIMRIDEEQVQLMKRRGGV 139

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D++ +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 140 GHDFSHIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 198

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     +  +    N +  I D FM+    +  +    P                
Sbjct: 199 AFIDAKM----EEGKVTGANVSVKITDEFMEAAVNDKPYIQQYP---------------- 238

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                    +       +++SA  +W K++   +++    + F D     S       + 
Sbjct: 239 --------INADRPSFTKEVSAKQIWEKIVHNAWKSAELGVLFWDTILKESIPDCYADLG 290

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNV 635
              + T             C L S+NL ++       + +FD++  A  ++ A R++D++
Sbjct: 291 FQTVSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFTDHARFDFETFAKHVQLAQRIMDDI 350

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           +D+                          H  EK K  +   R  G+G+      +  + 
Sbjct: 351 VDLEMEKIDLILNKIKSDPQSDEVKGAEYHLWEKIKDKSGKGRRTGVGITAEGDMIAAMG 410

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA   + E  + ++ +A  +SV +A+ERG +  F         F +   G  A 
Sbjct: 411 LRYGTQEATNFSVEVHKTLALNAYRSSVAMAKERGCFEIFDAKREQNNPFILRLKGEDA- 469

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                           +L   +   G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 470 ----------------QLYADMVEYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 513

Query: 792 KSNMSG-DFTVVNSFLVNE----LKQRDLWDEAMISDLKYHD------GSIGNIERIPDD 840
           +      +   V+   V+E     ++  ++    ++ ++ +        S   I+ +   
Sbjct: 514 RRRKVNPNEPDVHVDFVDEVGDSFEEYIVYHSKFLTWMQVNGIDAAKKYSQDEIDALVKQ 573

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                ATA ++D +  +      QKW+D + S+ + L +      ++ +Y +AW  G K 
Sbjct: 574 SPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNNVDETLVNKLYIEAWRSGCKG 633

Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
               R  S + V  S  K    +       D N++      P  
Sbjct: 634 CTIYRDGSRSGVMISVSKKDKKEETQTSEKDLNAAIEHHEPPCQ 677


>gi|291515281|emb|CBK64491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Alistipes shahii WAL 8301]
          Length = 850

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 138/713 (19%), Positives = 243/713 (34%), Gaps = 119/713 (16%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLA-----LKETEKEKRAVEFY 343
           F  + L   +   +Y L  + G+  E  P+    R+A  +            ++      
Sbjct: 26  FDGDDLAATVWVSKYALKDSFGNIYEKSPREMHERIASEIERIEQKYPNPLPKEEVFALL 85

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT---TVPDDLYGIFGALQENAMLAKYSGGL 400
           +            T   +  +   LS+CF+       D   GIF   +E   L K  GG+
Sbjct: 86  DHFRYVIPQGGPMTGIGNNFQVASLSNCFVIGHKNPADSYGGIFRMDEEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   L   H D E
Sbjct: 146 GHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSLSIKHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D + +TG    +    N +  I D FM+       +    P                
Sbjct: 205 RFIDAKVDTG----KVTGANVSIKIDDDFMRAALAGKKYHQQFP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI----RSPQQHV 576
                         K  + I A  LW K++   +++  P + F D               
Sbjct: 245 --------IKSDNPKYEQDIDARKLWEKIIHNAWKSAEPGVLFWDTIIRESIPDCYADEG 296

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRV 631
            V  S+N C EI L         C L ++NLL++  N       F++DK    +  A+ +
Sbjct: 297 FVTVSTNPCGEIPLCPY----DSCRLLAMNLLSYVDNPFKADAKFNFDKFRDHVYKAMHM 352

Query: 632 LDNVIDINCHTIEKA------------------------KKSNHTHRAIGLGLMGFQSAL 667
           +D++ID+    +E+                         ++     R  GLG+      L
Sbjct: 353 MDDIIDLELEKVEQIIGKIAADPEDLDVRRVELELWKKIREMARKGRRTGLGITAEGDML 412

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727
             L + Y + EA++ A E  + ++  A  ASV++A ERGA+  +  +             
Sbjct: 413 AALGLRYGTQEAIDFAVEVQKCLALAAYGASVKMAAERGAFPVYDAAKEVNNPMIARI-- 470

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787
                          R     L + +  +G RN   + IAPT T + +   +  I+P ++
Sbjct: 471 ---------------READPALYEEMTKVGRRNIAMLTIAPTGTTSLMSQTTSGIEPVFR 515

Query: 788 NLYVKSNM----------------SGDFTVVNSF---LVNELKQRDLWDEAMISDLKYHD 828
            +Y +                      F   N +    V  L+        + +      
Sbjct: 516 TVYKRRRKINPSDVDTHVDYEDETGEKFQEYNVYHHNFVKWLEASGYDTSKLATI----- 570

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
            S   +           ATA +ID +  ++     QKW+D + S+ + L +  S   +  
Sbjct: 571 -SDAELNEWVAASPYHGATANDIDWVAKVKMQGAIQKWVDHSISVTVNLPNNVSEALVAD 629

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +YR AW  G K     R      V          K    P             
Sbjct: 630 VYRTAWECGCKGVTVYRDGCRDGVLLEKNSKSRKKCEEHPGEVQKRPKSIPAD 682


>gi|222480783|ref|YP_002567020.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorubrum lacusprofundi ATCC 49239]
 gi|222453685|gb|ACM57950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 1056

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 138/701 (19%), Positives = 252/701 (35%), Gaps = 103/701 (14%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              E  A  F + + S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A 
Sbjct: 139 EHVEATADRFRDGMESLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAE 198

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           + +  GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +
Sbjct: 199 VFQSGGGMGYAFWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVM 258

Query: 453 ETWHIDVEEFL------------------------------DLRKNTGDDRRRTH----- 477
              H DV +F+                              +  +   D+  +       
Sbjct: 259 RVSHPDVIQFIHSKNKDVSLAHSLRLNDPDDFTHNSFADALEEARELIDEDGKVPEHLRN 318

Query: 478 -------DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                  + N +  + D FM+ +  +  +T  +P    + H    +  +  Y+ +    +
Sbjct: 319 AVEGHLSNFNISVGVTDDFMEALYNDEEFTFTNPRT-EEPHIATPET-KEIYDMF-GLGE 375

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
             E+     I A  LW  M+    E G P + + +  N               L T    
Sbjct: 376 HVEVGEVLSIPADELWDDMIEGAHENGEPGVIYLERVNKEHSFDTKEHPDHRILATNPCG 435

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDY----------------------------DKLA 622
               EE   CNLG INL    A +  D+                            ++  
Sbjct: 436 EQPLEEYEACNLGHINLSTLAAQDAPDWRVWSDEHADEYDTEEAAMSAFLEEAIDFEEFD 495

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             I    R L+NV+ ++   +EK ++     R IGLG+MG       L I Y +    E+
Sbjct: 496 ERIDYGTRFLENVVTMSDFPVEKIEQKVRDMRKIGLGVMGLAQLYIQLGIQYGTEPGNEV 555

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           A + M  I+  +   S ELA ERG ++ ++ S +       D                 +
Sbjct: 556 ARQLMTHINHASKQTSHELATERGTFNDWEESKYANPTEYRDWFE------------HYT 603

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSG 797
            L  DE +       +RN N   IAPT T + I   +   +P Y   Y K+         
Sbjct: 604 GLDADEWEDG---FPIRNHNTTTIAPTGTTSMIGNTTGGCEPIYNVAYYKNVSDDVQGDE 660

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIHATAFEI 851
                + + +  L++ D+  +A+  + +        DG +  +E +PD + ++     ++
Sbjct: 661 MLVEFDDYFLRTLEENDVDVDAVKQEAQEQMATNEFDG-VDGLETVPDAIGELFVVTGDL 719

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
                       Q+ +D A S      ++ + ++++ +YR  +  G K     R  + + 
Sbjct: 720 SGKQHASVQCACQEGVDSAISKTCNFPNDATAEEMEEVYRYIYDHGGKGVTVYRDGTRSK 779

Query: 911 VEKSTLKGVDGKLNAVPVTDP--NSSTHSLGIPSSCTSDTE 949
              +T        +     +          G   +   + +
Sbjct: 780 QVLTTRAKNAEFADESEAAEAIVEQIGEVFGGVEAFLDNED 820


>gi|29347555|ref|NP_811058.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339455|gb|AAO77252.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 796

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 135/681 (19%), Positives = 243/681 (35%), Gaps = 111/681 (16%)

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLT 374
              R+A  +A  E +      A E Y+LL  F ++    +         Q   LS+CF+ 
Sbjct: 1   MHWRIANEVARIEAKYPNALTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVI 60

Query: 375 TVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            V    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  
Sbjct: 61  GVDGAADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERY 120

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +++         R+GA+   +   H D E F+D +   G    +    N +  + D FM+
Sbjct: 121 SNSTR-EVAQDGRRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQ 175

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
                  +    P E ++                            ++I A  LW+K++ 
Sbjct: 176 AAVDEKPYIQQYPIESANPTT------------------------TKEIDASTLWKKIVH 211

Query: 552 MLFETGHPWITFKDPCNI----RSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSIN 606
             +++  P + F D                   S+N C EI L           NL S  
Sbjct: 212 NAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYV 271

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------------------- 647
           +     +  FD++     +  A R++D++ID+    IE+                     
Sbjct: 272 VNPFKPDAYFDFELFKKHVALAQRIMDDIIDLELEKIERIMEKIDQDPEGEEVKHAERNL 331

Query: 648 -----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
                K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +SVE+A
Sbjct: 332 WNKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMA 391

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERGA+  +              I  LAE                EL   +K  G RN  
Sbjct: 392 KERGAFEIYSNER----EQNNPFIQRLAEA-------------DPELYAEMKKYGRRNIA 434

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDFTVVN 803
           C+ IAPT T + +   +  I+P +  +Y +                        ++ V +
Sbjct: 435 CLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFH 494

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              V  ++                  S   I+ +        AT+ ++D +  ++   R 
Sbjct: 495 HKFVTWMEANGYDPAKRY--------SQEEIDELVAKSPYYKATSNDVDWLMKVKMQGRI 546

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QKW+D + S+ + L ++     ++ +Y +AW  G K     R  S + V  ST       
Sbjct: 547 QKWVDHSISVTINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKSDKKET 606

Query: 923 LNAVPVTDPNSSTHSLGIPSS 943
           L          +   +     
Sbjct: 607 LPPCKPPTVVETRPRVLEADV 627


>gi|153808746|ref|ZP_01961414.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185]
 gi|149128572|gb|EDM19790.1| hypothetical protein BACCAC_03045 [Bacteroides caccae ATCC 43185]
          Length = 796

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 134/681 (19%), Positives = 244/681 (35%), Gaps = 111/681 (16%)

Query: 320 FFMRVAMGLALKETEKEK--RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLT 374
              R+A  +A  E++      A E Y+LL  F ++    +         Q   LS+CF+ 
Sbjct: 1   MHWRIANEVARIESKYPNGLTAKELYDLLDHFKYIVPQGSPMTGIGNDYQVASLSNCFVI 60

Query: 375 TVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            V    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  
Sbjct: 61  GVDGAADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERY 120

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +++         R+GA+   +   H D E F+D +   G    +    N +  + D FM+
Sbjct: 121 SNSTR-EVAQDGRRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMQ 175

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +   +    P + ++                            ++I A  LW+K++ 
Sbjct: 176 AAVEGKPYVQQYPIDAANPA------------------------FTKEIDASTLWKKIVH 211

Query: 552 MLFETGHPWITFKDPCNI----RSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSIN 606
             +++  P + F D                   S+N C EI L           NL S  
Sbjct: 212 NAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYV 271

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN------------------------CHT 642
           +     +  FD+D     +  A R++D++ID+                            
Sbjct: 272 VNPFKPDAYFDFDLFKKHVALAQRIMDDIIDLELEKIERIMKKIDEDPENEEVKRAERVL 331

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            EK  K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +SVE+A
Sbjct: 332 WEKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSSVEMA 391

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERGA+  +              I  LAE                EL   +K  G RN  
Sbjct: 392 KERGAFEIYNNER----EQNNPFIKRLAEA-------------DPELYAEMKKYGRRNIA 434

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDFTVVN 803
           C+ IAPT T + +   +  I+P +  +Y +                        ++ V +
Sbjct: 435 CLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEYIVFH 494

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              V  ++          +           I+ +        AT+ ++D +  ++   R 
Sbjct: 495 HKFVTWMEANGYDPARRYTQ--------EEIDELVAKSPYYKATSNDVDWLMKVKMQGRI 546

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QKW+D + S+ + L ++     ++ +Y +AW  G K     R  S + V  ST      +
Sbjct: 547 QKWVDHSISVTINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKSEKKEE 606

Query: 923 LNAVPVTDPNSSTHSLGIPSS 943
           L              +     
Sbjct: 607 LPPCKPPTVVEVRPKVLEADV 627


>gi|55378393|ref|YP_136243.1| ribonucleoside-diphosphate reductase subunit alpha [Haloarcula
           marismortui ATCC 43049]
 gi|55231118|gb|AAV46537.1| ribonucleoside-diphosphate reductase alpha chain [Haloarcula
           marismortui ATCC 43049]
          Length = 1032

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 157/858 (18%), Positives = 290/858 (33%), Gaps = 127/858 (14%)

Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233
            D+S+  +     +   DG +  +            +     +  + AR     LR++  
Sbjct: 4   SDLSADEITLPIKRT--DGDTIEE-----------RLTGNAYHNILPAR----YLRKDAN 46

Query: 234 TTVYKKPQKATHHEMQCL-YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292
             + + P+       + +   E      ++ V   +  + +            +      
Sbjct: 47  GDLIEGPEDLFDRVAKNIALAEAVFEANKQDVDVHVSPDQLKPDHPRRDELADEVFGKGT 106

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
                ++     Y  ++N    E        V           +  A  F   +    FM
Sbjct: 107 SVDDDVETELSVY--NVNKFAYETV------VPELPEGVRDHVKSTADAFQEQMEQLSFM 158

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G  +  +R  G 
Sbjct: 159 PNSPTLMNAGDELQQLSACFVDSPGDDIDDIHQTAKEAAQVFQSGGGMGYAFWKLRPYGD 218

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD-------- 464
            +  T G + G I F++  +     + QGG R+GA    +   H DV +F+         
Sbjct: 219 PVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVIQFIHAKNKDVSL 278

Query: 465 ---LRKNTGDD-------------------------------RRRTHDMNTANWIPDLFM 490
              LR N  DD                                    + N +  + D FM
Sbjct: 279 AETLRLNDPDDFTHNSFAEALEEARELIDDDGQVPKHLRNAVEGHLSNFNISVGVTDDFM 338

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + +     +T  +P        +  +E +  Y+ +    +  E+     I A  LW  ++
Sbjct: 339 EALKAGEEFTFTNPRT--GDAHIVTEETKELYDMF-GLGEHVEVGEELSIPAEELWDDIV 395

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607
               E G P + + +  N +             L T        EE   CNLG INL   
Sbjct: 396 EGAHENGEPGVIYLERVNKQHSFDVEEHPDHEILATNPCGEQPLEEYEACNLGHINLSTL 455

Query: 608 -------LAHFANNQ------------------FDYDKLASTIRTAVRVLDNVIDINCHT 642
                     ++                      D+D+    I    R L+NV+ ++   
Sbjct: 456 AATDAPDWRVWSEAHADEYDSIDAAIDAFLEEAIDWDEFDRRIELGTRFLENVVTMSDFP 515

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
           +EK ++     R IGLG+MG       L + Y + EA EIA ++M  I+  + +AS ELA
Sbjct: 516 VEKIEQKVREMRKIGLGIMGLAQLYIQLGVAYGTEEANEIARQTMRHINHGSKAASHELA 575

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERG ++ ++ S +     P D      +   E   +                  +RN N
Sbjct: 576 EERGVFTEWENSKYA---NPTDYSDWFEKQTGE---DAADWEDG---------YPIRNHN 620

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVVNSFLVNELKQRDLWD 817
              IAPT T + I   +   +P Y   Y K+              + + +  L+  D+  
Sbjct: 621 TTTIAPTGTTSMIGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDYFLRALEDNDIDV 680

Query: 818 EAMISDLK------YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
           EA+  + +        DG +  +  +PD + ++  T  ++            Q+ +D A 
Sbjct: 681 EAVKQEAQEQMANNEFDG-VDGLTTVPDAIGELFVTTGDLSAKQHAGIQVACQEGVDSAI 739

Query: 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           S  +   ++ + +    ++   +  G K   Y R  + +    +T        +      
Sbjct: 740 SKTVNAPNDSTTEDAAEVFEYIYDHGGKGVTYYRDGTRSKQVLTTRAQNTEFSDMDADEI 799

Query: 931 PNSSTHSLGIPSSCTSDT 948
                   G       D 
Sbjct: 800 VAQIEEVFGGIEGFLEDE 817


>gi|171186058|ref|YP_001794977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoproteus neutrophilus V24Sta]
 gi|170935270|gb|ACB40531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoproteus neutrophilus V24Sta]
          Length = 1240

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 164/428 (38%), Gaps = 45/428 (10%)

Query: 565  DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN---------- 614
            +        QH   +    +       +      VCNL  INL+                
Sbjct: 810  EVVYDFGVPQHHRYIAEGIVSHN-CAETVQNPFEVCNLTHINLVKFARECAGKTFEEKLA 868

Query: 615  QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
              D++ LA   R   R LD+ ID +   IE   + N   R  GLG+MGF   L  L IPY
Sbjct: 869  CIDWEGLAEAARLGTRFLDDAIDRSYTGIEVIDEMNRATRKNGLGIMGFAELLIKLGIPY 928

Query: 675  ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP---IDSIGLLAE 731
            AS EAVE+ +  M +I  +A+  S ELA+ERG +  F+ S + +G  P            
Sbjct: 929  ASWEAVELINRIMAWIYVNALDESAELARERGPFKFFEKSAYARGEIPVLKFQDYVWGRW 988

Query: 732  VRDELAMNRTSRLPWDELKKRVKTI-----------------GMRNSNCMAIAPTATIAN 774
             R   A+    R   D L+                       G+RNS  ++IAPT   + 
Sbjct: 989  ERVRGALPPELREAGDRLRGITMRTREWLRPRLEALREKVRGGVRNSVVLSIAPTGRTSI 1048

Query: 775  ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            + G +  ++P +   ++++   G         V  L+ R LW   +   ++   G + + 
Sbjct: 1049 LAGTTSGVEPVFALAFIRNVTVGTLIEYYWPAVEWLRARGLWTPQVRKTVEET-GMLKDA 1107

Query: 835  ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
              +P+++K + ATA EI  +W +   +  Q+W+DQ  S  + +      + + + +  AW
Sbjct: 1108 P-LPEEVKHLFATAMEIGWLWHVLMQASAQQWVDQGISKTINMPANAPKEDVYWAFALAW 1166

Query: 894  LMGLKTTYYLRSRSAT---------SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
             +G+K     R +S +            K  L      +  V +              + 
Sbjct: 1167 ALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLADTKIIVKPVALEASIEEAAEKAKLKAL 1226

Query: 945  TS--DTEC 950
                D  C
Sbjct: 1227 EEGKDPYC 1234



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/434 (20%), Positives = 172/434 (39%), Gaps = 40/434 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +   DG+   F+ ++L++ V+ A           V  E    M   +   +L   +    
Sbjct: 4   VTKLDGSTEPFSPEKLKLSVQRAA----GEVGVEVDGEVDIKMDRAVGSWELADLVQLEL 59

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                  P  A+V    LL ++ +EV    + + +          Y +            
Sbjct: 60  LKRAIDRPELAEVAKSHLLGRVYKEVFGKDFLRHKSGYLERALARYRQ------------ 107

Query: 267 RLLHESMMDFDLVYLANDLKYERDFA--FEYLGLQILYD-RYFLHINGSRI-EMPQAFFM 322
            L    ++  + + L    + + DF     Y  L++  +  Y L     R+ E P     
Sbjct: 108 -LAEAGLLKEESLRLLEAFEPKPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAAW 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  +A       + A  +Y +++S   + ++P  FN+ T+    +SCF   V D L  
Sbjct: 167 RVATAVA----RDVETARRYYGVITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLSS 222

Query: 383 --------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
                   I+ AL  + ++ +  GG+G D++ +R  G  + G+ G + G + F+K+ +  
Sbjct: 223 LSHPGRFCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDTN 282

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
              + QGGKR+GA    L  WH DV +F+  +     D     + N + ++ D FM++  
Sbjct: 283 VEVIKQGGKRRGAQMGTLHVWHPDVRKFIKAKTGELKDA-HLQNFNISVFVDDAFMEKAL 341

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
                     +    L     K  E    +  ++A  G       + A  L+R++    +
Sbjct: 342 GLDKPEYPLVNPRIYLERAGRKPVEETRVSPPQEAVAG------WVDARELFREITEGAW 395

Query: 555 ETGHPWITFKDPCN 568
           ++G P + +KD  N
Sbjct: 396 DSGDPGVIYKDNLN 409


>gi|292656576|ref|YP_003536473.1| ribonucleoside-diphosphate reductase [Haloferax volcanii DS2]
 gi|291372162|gb|ADE04389.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloferax volcanii DS2]
          Length = 1033

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 138/671 (20%), Positives = 242/671 (36%), Gaps = 99/671 (14%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F  L+    FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G
Sbjct: 149 FEELMEQLSFMPNSPTLMNAGDELQQLSACFVDSPADDITDIHQTAKEAAEVFQSGGGMG 208

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV +
Sbjct: 209 YAFWKLRPYGDAVGSTGGIASGPITFMRTFDQMCETIAQGGARRGAQMGVMRVSHPDVIQ 268

Query: 462 F------------------------------LDLRKNTGDDRRRTH------------DM 479
           F                              LD  +   D+  R              + 
Sbjct: 269 FLHAKNKDVSLAHTLRLNDPDDFTHTKFVDALDEARELIDEDGRVPKHLRNAVEGHLSNF 328

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  I D FMK +  +  +   +P    + H    +  +  Y+ +    +  E+     
Sbjct: 329 NISVGITDGFMKALYNDEEFVFTNPRT-EEPHVATPQT-KEIYDMF-GLGEYVEVGEVLS 385

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW +++   +E G P + + +  N               L T        EE   
Sbjct: 386 VPAKELWDQIIEGAWENGEPGVVYLERANKEHSFDVEKHPDHQILATNPCGEQPLEEYEA 445

Query: 600 CNLGSINLLA-------HFANNQF---------------------DYDKLASTIRTAVRV 631
           CNLG INL          +                          D+++    I +  R 
Sbjct: 446 CNLGHINLSTLVAEDSPDWRVWYDAHSDEYDSLEAATEAFLEDAVDWEEFNHRIESGTRF 505

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+NV+ ++   +EK ++     R IGLG+MG       L + Y S E  EIA + M  I+
Sbjct: 506 LENVVTMSDFPVEKIEEKVRELRKIGLGIMGLAQLYIQLGVRYGSDEGNEIAQQLMTHIN 565

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +  AS ELA+ERG + +++ S +              E R+    +        E   
Sbjct: 566 HGSKRASHELAEERGPFEAWEDSKYANPT----------EYREWFEHHTGEDADDWEDG- 614

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVVNSFL 806
                 +RN N   IAPT T + +   +   +P Y   Y K+              + + 
Sbjct: 615 ----YPIRNHNTTTIAPTGTTSMVSNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDYF 670

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIG-----NIERIPDDLKKIHATAFEIDPMWLIESAS 861
           +  L+  D+  EA+  + +    S       ++  +PD + ++     ++  +       
Sbjct: 671 LRVLEANDIDVEAVKQEAQEQMASNQFDGLSSLSTVPDAISELFVVTSDLAGIEHAGVQC 730

Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             Q  +D A S         S + +D +YR  +  G K     R  + +    +T     
Sbjct: 731 ALQSGVDSAISKTCNFPNSASKEDMDEVYRYIYDHGGKGVTVYRDGTRSKQVLTTRAKNT 790

Query: 921 GKLNAVPVTDP 931
              +     + 
Sbjct: 791 EFSDDEEAAEA 801


>gi|163789925|ref|ZP_02184361.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
 gi|159874865|gb|EDP68933.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium
           sp. AT7]
          Length = 849

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 114/538 (21%), Positives = 200/538 (37%), Gaps = 68/538 (12%)

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            + T +       + G   +     + D                     N +  +   FM
Sbjct: 340 FDATMMKETADKLKTGGTYS---VHNPDFLS----------------GANISVCLTTDFM 380

Query: 491 KRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           + V  +  + L  P       +  + Y   +    +  E +A    +  +R I A  LW+
Sbjct: 381 EAVENDTDYELRFPAVESYSPEDMEEYNAHWSEVGDVREWEASGHAVHTYRTIKARELWK 440

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +         P I F D  N  +    +   V ++N C E  L       +VCNL ++N
Sbjct: 441 LITICATYAAEPGIFFIDNANKMTNAAAYGQKVVATNPCGEQPLAPY----SVCNLAAVN 496

Query: 607 LLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L       +   D+ KL  T++  VR+ DNVID   + +   +K     R +GLG+MG  
Sbjct: 497 LAEMADKESGTIDFAKLKQTVQVGVRMQDNVIDATPYFLADNEKQALGERRVGLGIMGLA 556

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L    + Y S E  ++ D+  E I+  A  AS+ELA+ERG++    G          +
Sbjct: 557 DLLIYCGVEYGSQEGNQLIDKVFETIAVSAYEASIELAKERGSFPFLIG----------E 606

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
           +      +R+    +   +     + + V   G+RNS+ + +APT +   + GVS  ++P
Sbjct: 607 TDAETTNLRERFLQSGYMKQMPKHIHEGVLKYGIRNSHLLTVAPTGSTGTMVGVSTGLEP 666

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            Y   Y +S   G F  V + +V E                       + E  PD+L K 
Sbjct: 667 YYSFSYFRSGRLGKFIEVKADIVQEYLD-------------------QHPEADPDNLPKQ 707

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
             +A  + P   ++     Q+WID + S  +      S +++  IY + +  G K     
Sbjct: 708 FVSAMSLTPEAHVDVQCTIQRWIDSSISKTVNAPQGYSVEQVQKIYERLYKGGAKGGTVY 767

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS--------DTECEVC 953
              S    +  TLK  +   +     +  SS       ++ +            C +C
Sbjct: 768 VDGSR-DTQVLTLKAEETLWDEETFDESPSSEQKTIQVAAISDAKNYGNEIGDTCPIC 824


>gi|310722362|ref|YP_003969186.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4]
 gi|306021205|gb|ADM79740.1| ribonucleotide reductase A subunit [Aeromonas phage phiAS4]
          Length = 570

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 169/681 (24%), Positives = 251/681 (36%), Gaps = 157/681 (23%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F   G  +    Y         E  +  F RVA  LA  +   E     +++LL S    
Sbjct: 27  FTTQGYSMFLKNYQYKG-----ETVRGAFRRVASTLAKHDIRPE-AEERYFDLLWSGKLA 80

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TP   N+GT      SC  + V D +   +    E AMLAK   G  +    +R  G+
Sbjct: 81  MATPVFCNTGTDRGMPVSCAGSYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGS 140

Query: 413 HIHGTNGKSQGVIP-FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            I  ++ K+ G++P F    N        G  R+G    Y++  H D             
Sbjct: 141 DISTSHNKADGLVPVFDNFVNTKTKVAAAG--RRGEWAGYVDFSHGDF------------ 186

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                                      W L      +      G  FE   E+YE+   R
Sbjct: 187 ---------------------------WELQGYVLKNPASAHVGWVFEK--EDYEKLLAR 217

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEI 588
               + R       W ++L M   TG  ++      N  +PQ        + SS LCTEI
Sbjct: 218 DPEYMAR-------WNELLYMRARTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEI 270

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--------INC 640
            L S    T  C L S+NL      +  D       I+ AVR LD+V          +  
Sbjct: 271 ALPSDDMHTFTCILSSLNLARWDEISAED-------IKWAVRFLDSVCSEFLEKAKKLPY 323

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
            T+ KA +     RA+GLG +GF + L +    + S  A  + +     I  +A +AS E
Sbjct: 324 DTLHKAIRFTEKARALGLGTLGFHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRE 383

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E G      G+                                          GMRN
Sbjct: 384 LAEEHGEPEWCVGT------------------------------------------GMRN 401

Query: 761 SNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +  + IAP  + A + G VSQ ++P   N +++ + +GDF   N  L   L  R    E 
Sbjct: 402 ATLITIAPNMSSALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDRLSDKEI 461

Query: 820 ---MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              M +   YH+GS+ +++ + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+
Sbjct: 462 KDLMENIATYHNGSVQHLDILTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLF 521

Query: 877 L-DEPSGKKLDFIYRQAW--LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
              +     +  ++R A+     LK+ YYLRS                            
Sbjct: 522 FAADEKESVVASVHR-AFMDDPRLKSLYYLRS---------------------------- 552

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                    + T + EC  CQ
Sbjct: 553 ----ERGVKASTGEAECLACQ 569


>gi|213584526|ref|ZP_03366352.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 478

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 124/495 (25%), Positives = 213/495 (43%), Gaps = 56/495 (11%)

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+ 
Sbjct: 1   MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 60

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548
            +   +NA   LFSP    D+   YGK F     +        +  V +  I+A   ++ 
Sbjct: 61  FRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 117

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCN 601
           +  + FE+G+ +I F+D  N  +P    G ++ SNLC+EI   +S+           + +
Sbjct: 118 LAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 175

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660
             S NL +    +  D   +  T+ TA+R L  V D+ +  ++      N    AIGLG 
Sbjct: 176 DISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQ 235

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719
           M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G
Sbjct: 236 MNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASG 295

Query: 720 VF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
            +       D     A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +
Sbjct: 296 DYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGS 355

Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           I+ I   + SI P    + ++    +G       F+ N                      
Sbjct: 356 ISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN---------------------- 393

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                    +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++   
Sbjct: 394 ---------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 444

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+K+ YY+R
Sbjct: 445 IYAWRKGIKSLYYIR 459


>gi|309782687|ref|ZP_07677408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia sp. 5_7_47FAA]
 gi|308918465|gb|EFP64141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ralstonia sp. 5_7_47FAA]
          Length = 600

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 122/605 (20%), Positives = 204/605 (33%), Gaps = 75/605 (12%)

Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
             F RVA  LA  E   ++      FY  L                  H  + +CF+  +
Sbjct: 29  DVFKRVAHALAAAEQPDQRAHFTRLFYANLLQGAIGAGRIMANAGSANHGTMVNCFVHPI 88

Query: 377 PDDLYGIFGAL------QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                 +  A              +  GG+G D++ +    A    +   +  V   L  
Sbjct: 89  GASEQSVADASDVERALHAAQRTLQMGGGVGYDFSVIAPADAEQATSYSGTGSVCAVLDS 148

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +           R GA  A L   H D+  F+  ++     R+R    N +  + D FM
Sbjct: 149 FDRVCTTQALVNTRGGAQMAVLRCDHPDLAAFITAKRG----RKRWATFNLSVAVTDAFM 204

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V  +  W L      +      G             A       +  + A  LW  + 
Sbjct: 205 QAVADDGLWCLQHRAVPNAQRLATG-----------AHALSNGKWCYAVVPARQLWNMIA 253

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
                +  P + F D  N  +    +  + ++N C E  L         C LG I++   
Sbjct: 254 EAAHHSAEPGLLFIDTINAANDLAEIETIAATNPCGEQPLPP----WGSCVLGPIDVSRW 309

Query: 611 FANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
                       FD+  L+  +R  VR+LDN I+I    + +        R IG+G+ G 
Sbjct: 310 VQWPFGMGGQPLFDFVGLSQAVRVQVRMLDNAIEITRWPLPEHMHEAQAKRRIGVGVTGL 369

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
             AL ++ +PY +P A   A +    +  +A +AS  LA ERG Y               
Sbjct: 370 ADALTMMCLPYDAPAARCFAAQIGRCLRDNAYAASAALACERGPYP-------------- 415

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQS 781
                L      LA    S      + + V   G+RNS+ +++APT +++   G   S  
Sbjct: 416 -----LFSPERSLASGHFSAALPKAVCEAVAKHGLRNSHLLSLAPTGSVSLAFGDNCSSG 470

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH-DGSIGNIERIPDD 840
           I+P++  +Y +             L           E     L     G    +      
Sbjct: 471 IEPAFDWVYQRRVR---IQHRAPQLYRI--------ENRAYRLFRALYGQRAALPG---- 515

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
                 TA +ID +  +   +  Q ++D + S  + L    S  ++  +   AW + LK 
Sbjct: 516 ---YFVTARQIDGLDHLRMVATLQPFVDASISKTVLLPCSASCAQVAALLFHAWQLRLKG 572

Query: 900 TYYLR 904
               R
Sbjct: 573 ITIFR 577


>gi|109290087|ref|YP_656336.1| ribonucleotide reductase A subunit [Aeromonas phage 25]
 gi|104345760|gb|ABF72660.1| ribonucleotide reductase A subunit [Aeromonas phage 25]
          Length = 570

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 168/681 (24%), Positives = 251/681 (36%), Gaps = 157/681 (23%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           F   G  +    Y         E  +  F RVA  LA  +   E     +++LL S    
Sbjct: 27  FTTQGYSMFLKNYQYKG-----ETVRGAFRRVASTLAKHDIRPE-AEERYFDLLWSGKLA 80

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TP   N+GT      SC  + V D +   +    E AMLAK   G  +    +R  G+
Sbjct: 81  MATPVFCNTGTDRGMPVSCAGSYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGS 140

Query: 413 HIHGTNGKSQGVIP-FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            I  ++ K+ G++P F    N        G  R+G    Y++  H D             
Sbjct: 141 DISTSHNKADGLVPVFDNFVNTKTKVAAAG--RRGEWAGYVDFSHGDF------------ 186

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                                      W L      +      G  FE   E+YE+   R
Sbjct: 187 ---------------------------WELQGYVLKNPASAHVGWVFEK--EDYEKLLAR 217

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEI 588
               + R       W ++L M   TG  ++      N  +PQ        + SS LCTEI
Sbjct: 218 DPEYMAR-------WNELLYMRARTGKGYMWKNWIANDLAPQAIKNSGIRIRSSQLCTEI 270

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--------INC 640
            L S    T  C L S+NL      +  D       I+ AVR LD+V          +  
Sbjct: 271 ALPSDDMHTFTCILSSLNLARWDEISAED-------IKWAVRFLDSVCSEFLEKAKKLPY 323

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
            T+ KA +     RA+GLG +GF + L +    + S  A  + +     I  +A +AS E
Sbjct: 324 DTLHKAIRFTEKARALGLGTLGFHTYLQMNDTAFESGAAHILNNSIYSQIKVYAEAASRE 383

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E G      G+                                          GMRN
Sbjct: 384 LAEEHGEPEWCVGT------------------------------------------GMRN 401

Query: 761 SNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +  + IAP  + A + G VSQ ++P   N +++ + +GDF   N  L   L  R    E 
Sbjct: 402 ATLITIAPNMSSALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLSDRLSDKEI 461

Query: 820 ---MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              M +   YH+GS+ +++ + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+
Sbjct: 462 KDLMENIATYHNGSVQHLDILTDHEKMVFKTAYEIDQHAIIRLASARQRHIDQAQSINLF 521

Query: 877 L-DEPSGKKLDFIYRQAW--LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
              +     +  +++ A+     LK+ YYLRS                            
Sbjct: 522 FAADEKESVVASVHK-AFMDDPRLKSLYYLRS---------------------------- 552

Query: 934 STHSLGIPSSCTSDTECEVCQ 954
                    + T + EC  CQ
Sbjct: 553 ----ERGVKASTGEVECLACQ 569


>gi|325270011|ref|ZP_08136619.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM
           16608]
 gi|324987596|gb|EGC19571.1| ribonucleoside-diphosphate reductase [Prevotella multiformis DSM
           16608]
          Length = 868

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 128/714 (17%), Positives = 259/714 (36%), Gaps = 113/714 (15%)

Query: 294 EYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349
           + L  ++  ++Y +   +G+  E  P+    R+A  +A  E + +    A E ++LL  F
Sbjct: 26  DELAARVWVNKYAVKDSHGNIYEKSPEQMHWRIANEIARIERKYKNPLTAQEVFDLLDHF 85

Query: 350 HFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGLGND 403
            ++    +       + Q   LS+CF+  +    D    I    +E   L K  GG+G+D
Sbjct: 86  RYVIPAGSPMTGIGNNHQVASLSNCFVIGLDGDADSYGAILHIDEEQVQLMKRRGGVGHD 145

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            + +R  G+ ++ +   S G++PF++  +++         R+GA+   +   H D E F+
Sbjct: 146 MSQIRPKGSPVNNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSEAFI 204

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D +     +  +    N +  + D FM+    +  +    P +  +              
Sbjct: 205 DAKM----EEGKVTGANVSVKLTDEFMQAAIDDRPFVQQFPIDSREPMSA---------- 250

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                         + +SA ALW K++   +++  P + F D     S       +    
Sbjct: 251 --------------KTVSARALWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFQT 296

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDI 638
           + T             C L S+NL ++       + +FD+D  +  ++ A R++D+++D+
Sbjct: 297 VSTNPCGEIPLCPYDSCRLLSLNLYSYVIDPFTDHARFDFDLFSRHVQLAQRIMDDIVDL 356

Query: 639 N------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674
                                     H  EK K+ +   R  G+G+      +  + + Y
Sbjct: 357 ELEKIELIMEKIRRDPQSDEVKQTEYHLWEKIKEKSGKGRRTGVGITAEGDMIAAMGLRY 416

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            + EA + A      ++ +A  +SV +A+ERGA++ +         F             
Sbjct: 417 GTQEATDFAVSVHRTLALNAYRSSVTMAKERGAFAIYDADREAHNPFINR---------- 466

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                   R    +L + ++  G RN  C+ IAPT T + +   +  I+P +  +Y +  
Sbjct: 467 -------LREADPQLYEDMRRCGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRR 519

Query: 795 MS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
                                 ++ V +   +  ++   +      +           I+
Sbjct: 520 KVNPNDTDVHVDFVDEVGDSFEEYIVYHRKFLTWMEANGIDTRKRYTQ--------EEID 571

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
            +        ATA ++D +  +      QKW+D + S+ + L        ++ +Y +AW 
Sbjct: 572 GLVKRSPYYKATANDVDWLMKVRMQGAIQKWVDHSISVTVNLPNQVDEALVNKLYVEAWR 631

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
            G K     R  S + V  S  K    K              S    +      
Sbjct: 632 SGCKGCTIYRDGSRSGVMISVSKKDKKKEKTADEDKRKDLYSSEEHHTHILERP 685


>gi|157325078|ref|YP_001468503.1| gp123 [Listeria phage A511]
 gi|66733086|gb|AAY52904.1| gp123 [Listeria phage A511]
          Length = 466

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 131/455 (28%), Positives = 214/455 (47%), Gaps = 25/455 (5%)

Query: 147 IMMDDGTLI-SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           I+ D+G+    F   RL   ++        ++ +    +    +   D  S  ++   LI
Sbjct: 21  IVKDNGSRKLPFEEDRLNRYLDNIKKEFPKLNIESYRKKAIHYILSKDEYSVDEMVDYLI 80

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             + + ++   P +    AR  L++L ++     +              Y        + 
Sbjct: 81  REAESRVDVTTPEWEFFAARLYLQRLYKKASKNRFYDAIMKY-----GSYVGLHESLAQR 135

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFF 321
           G+ +  + E     +L+     +   +D  F Y GL +L  RY          E+PQ  +
Sbjct: 136 GIYSVDILEKYSREELMEAETFIDSSKDLLFTYNGLYLLATRYLATDEDKKVFELPQERW 195

Query: 322 MRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + +A+ L   E E   +   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L
Sbjct: 196 LTIALFLMQDEKENRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 255

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +  + A ++K  GG+G     VR  GA I G  G S G +P++K  N+TAV+V+Q
Sbjct: 256 QGIYDSNTDVARVSKQGGGVGVYIGNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVSVDQ 315

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+   L+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V     W 
Sbjct: 316 LGARKGAITVTLDVFHKDIEAFLDLRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRGEWY 375

Query: 501 LFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           LF P EV      Y ++          F   YE   +     +    +++ A+ + ++++
Sbjct: 376 LFDPYEVKQKKGWYLQDYYDKEKGSGLFREKYEELIQDGTISK----KRVKALDIMKRIM 431

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               ETG P++ ++D  N  +P  H G++++SNLC
Sbjct: 432 ISQLETGTPFMFYRDTVNRANPNSHAGMIYASNLC 466


>gi|56807758|ref|ZP_00365618.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus
           pyogenes M49 591]
          Length = 522

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 129/546 (23%), Positives = 220/546 (40%), Gaps = 81/546 (14%)

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
            G+G   + +R  GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H 
Sbjct: 2   AGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHP 61

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FL  +K   D++ R   ++    +PD F +   +N    LFSP    ++   YG  
Sbjct: 62  DIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIP 118

Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F                K+ +  I A  L  ++  +  E+G+P+I   D  N  +P    
Sbjct: 119 FNYLDITNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--D 176

Query: 577 GVVHSSNLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLAST 624
           G +  SNLC+EI    +                  CNLGS N+L    +          +
Sbjct: 177 GKIIMSNLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRS 231

Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
           I+T  R L  V D  +   +   K  N      GLG MG  S L   HI Y SPE++E  
Sbjct: 232 IKTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFT 291

Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRD 734
           D     +++  +  S  +A+ER   +  F+ S +  G +    +         L+ ++  
Sbjct: 292 DIYFMLLNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFK 351

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-S 793
           +  + + S   W+ L+  V+  G+ + N +A+AP  +I+ I   S SI P  Q +  +  
Sbjct: 352 DHFIPQAS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQE 409

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
              G                                       +  D    + +A+++D 
Sbjct: 410 KKIGKIYYP-------------------------------ANGLSTDTIPYYTSAYDMDM 438

Query: 854 MWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKT 899
             +I+  +   + +DQ  SL L+L               + + + L  +   A+  G+K+
Sbjct: 439 RKVIDVYAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKS 498

Query: 900 TYYLRS 905
            YY+R+
Sbjct: 499 MYYIRT 504


>gi|189462576|ref|ZP_03011361.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136]
 gi|189430737|gb|EDU99721.1| hypothetical protein BACCOP_03266 [Bacteroides coprocola DSM 17136]
          Length = 847

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 138/712 (19%), Positives = 267/712 (37%), Gaps = 113/712 (15%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P     R+A  +A  E +      + E + L 
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIYEKSPVDMHWRIANEVARIEAKYPNALSSEELFGLF 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDYQIASLSNCFVIGLDGKADSYGAIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+   +N  +T   P + +D           
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDEFMQAAVENRTYTQQFPIDSNDPQ--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                          V ++I+A ALW+K++   +++  P + F D     S       + 
Sbjct: 245 ---------------VKKEINASALWKKIVHNAWKSAEPGVLFWDTILRESVPDCYADLG 289

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  N       FD++     +  A R++D++
Sbjct: 290 FRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFTPEAYFDFELFKKHVGLAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  + +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIEKIMEKIDSDPESEEVKGTERHLWEKIYRKSGLGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +++  + I+  A  +SV +A+ERGA+  +  +                 
Sbjct: 410 LRYGTEEATEFSEKVHKTIAIEAYRSSVNMAKERGAFEIYDAAR---------------- 453

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
             +   +NR  +    EL + +K  G RN  C+ IAPT T + +   +  I+P +  +Y 
Sbjct: 454 EVNNPFINRI-KDADPELYEDMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYK 512

Query: 792 KSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           +                        ++ V +   +  ++      +   +          
Sbjct: 513 RRRKVNPNDANVHVDFVDETGDAFEEYVVFHHKFLTWMQINGYDPDKHYTQ--------E 564

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
            I+ +        AT+ ++D +  ++   R QKW+D + S+ + L      + ++ +Y +
Sbjct: 565 EIDDLVAKSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNSVDEELVNRLYVE 624

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           AW  G K     R  S   V  ST K  D K        P  +     +  +
Sbjct: 625 AWRSGCKGCTVYRDGSRAGVLVSTQKKKDKKEEECQCKPPQVTEVRPRVLEA 676


>gi|224027035|ref|ZP_03645401.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM
           18228]
 gi|224020271|gb|EEF78269.1| hypothetical protein BACCOPRO_03794 [Bacteroides coprophilus DSM
           18228]
          Length = 847

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 141/705 (20%), Positives = 267/705 (37%), Gaps = 99/705 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYNLL 346
           F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      A E ++LL
Sbjct: 19  FKGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALSAQELFDLL 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+  +    D    I    +E   L K  GG+
Sbjct: 79  DHFKYIVPQGSPMTGIGNDYQVASLSNCFVIGLEGAADSYGAIIRIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +   G    +    N +  + D FM+   +   +T   P +              
Sbjct: 198 AFIDAKMTEG----KVTGANVSVKLDDEFMQAAVEGRMYTQQFPIDSDHPM--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                          V ++I+A ALW+K++   +++  P + F D     S       + 
Sbjct: 245 ---------------VSKQINASALWKKIVHNAWKSAEPGVLFWDTIIRESVPDCYADLG 289

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  N       FD+D     I  A R++D++
Sbjct: 290 FRTVSTNPCGEIPLCPYDSCRLLAINLYSYVINPFTPEARFDFDLFKKHIALAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                          H  EK  + +   R  G+G+      L  + 
Sbjct: 350 IDLELEKIERIMEKIDADPESEEVKGAERHLWEKIYRKSGLGRRTGVGITAEGDMLAAMG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + Y + EA E +++  + ++  A  +SV +A+ERGA+  +                    
Sbjct: 410 LRYGTEEATEFSEQVHKTVALEAYRSSVNMAKERGAFEIYDA----------------ER 453

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   +NR  +     L + +   G RN  C+ IAPT T + +   +  I+P +  +Y+
Sbjct: 454 EKNNPFINRI-KDADPALYEDMVRYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYM 512

Query: 792 KSNMSG-DFTVVNSFLVNEL-----------KQRDLWDEAMISDLKYHDGSIGNIERIPD 839
           +      +   V+   V+E             +   W E    D   H  +   I+ +  
Sbjct: 513 RRRKVNPNDANVHVDFVDETGDAFEEYVVFHHKFLTWMEVNGYDPNKHY-TQEEIDDLVA 571

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
                 AT+ ++D +  ++   R QKW+D + S+ + L      + ++ +Y +AW  G K
Sbjct: 572 KSPYYKATSNDVDWLMKVKMQGRIQKWVDHSISVTINLPNSVDEELVNRLYVEAWRSGCK 631

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                R  S   V  ST K    +        P        +  +
Sbjct: 632 GCTVYRDGSRAGVLISTKKDKKKEEEECHCKPPQVVEVRPKVLEA 676


>gi|38639972|ref|NP_943927.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414661|gb|AAQ17704.1| NrdA-A aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
          Length = 473

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 113/459 (24%), Positives = 185/459 (40%), Gaps = 26/459 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +    G   +F  K+L  I+  A +G   +    +L+    ++ DG+S  +++   I 
Sbjct: 1   MLVRKSSGITENFEPKKLLKILGFATAG-TRIDPNEILNGIMPSITDGMSTKNIQKLAIK 59

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            +   I  E  +Y  V AR  +  +R++V         K            +    +++G
Sbjct: 60  FAADRISIEQSDYQYVAARLQMYAIRKDVYNQFDPIHLK-----------RHTLDLVQDG 108

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321
           +  + L     D +   L   +K++RDF   Y G+    ++Y           E PQ  +
Sbjct: 109 IYDKDLAIKWTDDEFNELNAYIKHDRDFDLAYAGVMQFKEKYLAKDRSTDQIYETPQILY 168

Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           M VAM L   E  ++  +   FY++ S       TP L    T   Q SSC      D+L
Sbjct: 169 MLVAMCLHQDEKTDRIAKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIESGDEL 228

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R  G+ I     +  G+IPF K       + +Q
Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++VE+ L L+ N G +  R   ++    I  LF +R+  +   T
Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRQLDYGIQINKLFFERLKNDDYIT 348

Query: 501 LFSPD----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
           LFSPD    E+ DL      +F+  YE  E +    +    ++I A  L+         T
Sbjct: 349 LFSPDVQNGELYDLFYKDPVKFKELYEMLENEPWCRK----KRIKASELFNLFAQERTGT 404

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           G  +  F D  N  +P  +   +   NLC EI L +   
Sbjct: 405 GRIYPMFVDNVNSATP--YKEPIRMGNLCIEIALPTVPM 441


>gi|169334439|ref|ZP_02861632.1| hypothetical protein ANASTE_00839 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259156|gb|EDS73122.1| hypothetical protein ANASTE_00839 [Anaerofustis stercorihominis DSM
           17244]
          Length = 987

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 129/750 (17%), Positives = 253/750 (33%), Gaps = 66/750 (8%)

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM-------MDFDLVYL 281
            + V   ++         EM+ L    F       + A               +  +  +
Sbjct: 32  YKRVDVEIFDYKTNKNIFEMKDLEFPEFYSKNACNIIASKYFRRAGVGSADGHETSMKQV 91

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
           A+ +      A    GL    ++Y +  +     +    +   +        ++      
Sbjct: 92  ADRMVGFWADALVDEGLIRTKEQYSIFYDELVYALINQMWAPNSPQWFNTGIKRNYGIAG 151

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSG 398
             + L  +     T           Q S+CF+ ++ D       I         L K   
Sbjct: 152 ESDHLYYYDIKSGTVKESKDRYTRTQASACFILSIKDTLLGDNSISEQYITETKLFKGGS 211

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHI 457
           G+G +++ +R +      + GKS G++ FLK  +  A A+  G   R+ A     +  H 
Sbjct: 212 GVGTNFSNLRAINEG-LSSGGKSSGLMSFLKGFDRNAGAIKSGGTTRRAAKMVITDIDHP 270

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           ++E+F+  +    D  R    M     +       V+   G      +   +        
Sbjct: 271 EIEDFITWKAREEDKVRALGKMGYDMSMDGEAYATVSGQNGNNSVRLN--KEFMQKVLHL 328

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            E    ++E +    + KV RK+    LW  +    +    P + F D  N         
Sbjct: 329 DEDPDADFELKGRVDD-KVNRKVKVKELWDLICQSTWNCADPAVQFDDTFNDWHTCPAGE 387

Query: 578 ---------VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD--KLASTIR 626
                     ++++N C+E        +   CNL SIN+   F+  +  +        I 
Sbjct: 388 DGKVGAKHNRINATNPCSEYAF----LDNTACNLASINIYRFFSKEEGKFKLNDYIHLIS 443

Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
               VL+  I       ++  + +H  R  GLGL    S L +L  PY S E   ++   
Sbjct: 444 LIQLVLEASIHWGQFPTKEVARKSHLFRTTGLGLANMASLLMVLGYPYDSDEGRNLSASL 503

Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGV---------------------FPIDS 725
              ++  +   S  +A+E G ++ +  +                            P+  
Sbjct: 504 CSIMTAQSYLVSSLMAKEVGPFAKYDINKEHLLKVLRNSARCSLAIDDNFEGLDYSPVRL 563

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784
              L        +    ++ W +  +     G+RN+    IAPT TI+      + S++P
Sbjct: 564 DEDLMTEMGLEEVLNAGKILWIKAIEGANRYGVRNAQVSVIAPTGTISFAMDCGATSLEP 623

Query: 785 SYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH------DG-----SIG 832
            Y N+ Y      G   +VN  L + L     + +  +  +K +      +G     ++ 
Sbjct: 624 FYSNVVYKSLAGGGMMELVNPVLEDALINLG-YSDEQVDKIKDYLLEKDENGMFVHFNLN 682

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           +   + ++ KKI  TA +I P   +   +     I  + S  + +    + K++  IY+ 
Sbjct: 683 DAPYLREEDKKIFETANDISPSGHVLMVAAVTPMISGSVSKTVNMPVNATVKEISDIYKL 742

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
           +++ G+K     R  S      +T    D 
Sbjct: 743 SYITGVKAISVYRDGSKACQPLNTALTEDS 772


>gi|257387814|ref|YP_003177587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halomicrobium mukohataei DSM 12286]
 gi|257170121|gb|ACV47880.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halomicrobium mukohataei DSM 12286]
          Length = 1053

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 132/678 (19%), Positives = 241/678 (35%), Gaps = 101/678 (14%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EF + + +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+
Sbjct: 147 EFQDAMENLSFMPNSPTLMNAGDELQQLSACFVDSPDDDIDDIHQTAKEAAQVFQSGGGM 206

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV 
Sbjct: 207 GYAFWQLRPYGDQVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDVI 266

Query: 461 EFL------------------------------DLRKNTGDDRRRTH------------D 478
           +F+                              +  +   D+  +              +
Sbjct: 267 QFIHAKNKDVSLAETLRLNDPDDFTHNSFAEALEEARELIDEDGKVPKHLRNAVEGHLSN 326

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  I D FM  +     +T  +P            +    YE +    +  E     
Sbjct: 327 FNISVGITDDFMDALEAGEEFTFTNPRTNEPHVATEETQ--ELYEMF-DLGEYVEAGEVL 383

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            I A  LW +++    E G P + + +  N +             L T        EE  
Sbjct: 384 SIPAEKLWERIIGGAHENGEPGVIYLERVNKQHSFDVEEHPDHRILATNPCGEQPLEEYE 443

Query: 599 VCNLGSINLLAHFANNQFDY----------------------------DKLASTIRTAVR 630
            CNLG INL      +  D+                            ++    I    R
Sbjct: 444 ACNLGHINLSTLADQDAPDWRVWSDAHADEYDALEDAVDAFLDDALDNEEFQRRIELGTR 503

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
            L+NV+ ++   +EK ++     R IGLG+MG       L + Y S E  EIA + M  I
Sbjct: 504 FLENVVTMSDFPVEKIEEKVREMRKIGLGIMGLAQLYIQLGVKYGSEEGDEIARQIMRQI 563

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +  +  AS ELA++RG +  +  S +       +      E +  L  +  +        
Sbjct: 564 NHGSKWASHELAEDRGTFDEWDNSKYADPTAYREWF----ESQTGLDADEWA-------- 611

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVVNSF 805
              +   +RN N   IAPT T + +   +   +P Y   Y K+              + +
Sbjct: 612 ---EGFPIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDY 668

Query: 806 LVNELKQRDLWDEAMISDLKY------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            +  L++  +  +A+  + +        DG +  +  +PD + ++  T  ++ P      
Sbjct: 669 FLRVLEENGIDVDAVKEEAQEQMADNAFDG-VDGLTTVPDAIGELFVTTGDLTPKEHAGI 727

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
               Q+ +D A S  +   ++ + +    ++   +  G K   Y R  + +    +T   
Sbjct: 728 QCACQQGVDSAISKTVNAPNDSTLEDAREVFEYIYEHGGKGVTYYRDGTRSKQVLTTRAQ 787

Query: 919 VDGKLNAVPVTDPNSSTH 936
                +            
Sbjct: 788 NAEFADMDEGEIVAQIEE 805


>gi|66732767|gb|AAY53358.1| gp55 [Listeria phage P100]
          Length = 449

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 213/455 (46%), Gaps = 25/455 (5%)

Query: 147 IMMDDGTLI-SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203
           I+ D+G+    F   RL   ++        ++ +    +    +   D  S  ++   LI
Sbjct: 4   IVKDNGSRKLPFEEDRLNRYLDNIKKEFPKLNIESYRKKAIHYILSKDEYSVDEMVDYLI 63

Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             + + ++   P +     R  L++L ++     +              Y        + 
Sbjct: 64  REAESRVDVTTPEWEFFATRLYLQRLYKKASKNRFYDVIMKY-----GSYVGLHESLAQR 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFF 321
           G+ +  + E     +L+     +   +D  F Y GL +L  RY          E+PQ  +
Sbjct: 119 GIYSVDILEKYSREELMEAETFIDSSKDLLFTYNGLYLLATRYLATDEDKKVFELPQERW 178

Query: 322 MRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
           + +A+ L   E E   +   E Y  LS+ +   +TPTL N+G    QLSSCF+ TV D L
Sbjct: 179 LTIALFLMQDEKENRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSL 238

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI+ +  + A ++K  GG+G     VR  GA I G  G S G +P++K  N+TAV+V+Q
Sbjct: 239 QGIYDSNTDVARVSKQGGGVGVYIGNVRSSGAPIRGVLGASGGTVPWIKQLNNTAVSVDQ 298

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G RKGA+   L+ +H D+E FLDLR N GD R R HD+ T+  IPDLFM+ V     W 
Sbjct: 299 LGARKGAITVTLDVFHKDIEAFLDLRLNNGDQRLRAHDIFTSVSIPDLFMEAVENRGEWY 358

Query: 501 LFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           LF P EV      Y ++          F   YE   +     +    +++ A+ + ++++
Sbjct: 359 LFDPYEVKQKKGWYLQDYYDKEKGSGLFREKYEELIQDGTISK----KRVKALDMMKRIM 414

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
               ETG P++ ++D  N  +P  H G++++SNLC
Sbjct: 415 ISQLETGTPFMFYRDTVNRANPNSHAGMIYASNLC 449


>gi|328956633|ref|YP_004374019.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
 gi|328672957|gb|AEB29003.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium
           sp. 17-4]
          Length = 849

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 108/504 (21%), Positives = 194/504 (38%), Gaps = 47/504 (9%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEI 520
           +    +  D       N +  +   FM+ V + A + L  P       +  + Y   +  
Sbjct: 354 EGGTYSVHDPDFLSGANISVCLTTDFMEAVEKGADYPLRFPAVETYSPEEMEEYNAHWSE 413

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVV 579
             +  + ++    +  +R I A  LW+ +         P I F D  N  +    +   V
Sbjct: 414 IGDVRDWESSGHGVHTYRTIPARELWKLITICATYAAEPGIFFIDNANQMTNASAYGQKV 473

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVID 637
            ++N C E  L       +VCNL ++NL       +   ++DKL  T++  VR+ DNVID
Sbjct: 474 VATNPCGEQPLAPY----SVCNLAAVNLAEMANKKSGTINFDKLKQTVQVGVRMQDNVID 529

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
              + + + +K     R +GLG+MG    L      Y S E  ++ D+  E I+  A  A
Sbjct: 530 ATPYFLAENEKQALGERRVGLGIMGLADLLIYCGAEYGSQEGNQLVDKIFEVIAVSAYEA 589

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S+ELA+ERG++    G           +     ++R++   +   +     + + +   G
Sbjct: 590 SIELAKERGSFPFLIG----------KTEAETTKLREKFLQSGYMKKMPKHIHEGIMRYG 639

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS+ + +APT +   + GVS  ++P Y   Y +S   G F  V + +V E        
Sbjct: 640 IRNSHLLTVAPTGSTGTMVGVSTGLEPYYSFSYFRSGRLGKFIEVKADIVQEYLDH---- 695

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                          + E  P+ L K   +A  + P   ++     Q+WID + S  +  
Sbjct: 696 ---------------HPETDPERLPKQFVSAMSLKPEAHVDVQCTIQRWIDSSISKTVNA 740

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSV------EKSTLKGVDGKLNAVPVT 929
               + +++  IY + +  G K        S  T V      E    +    +L+     
Sbjct: 741 PRGYTVEQVQTIYERLYKGGAKGGTVYVDGSRDTQVLTLKAEETIWDEETKEELSPTAQK 800

Query: 930 DPNSSTHSLGIPSSCTSDTECEVC 953
               +  S            C +C
Sbjct: 801 TIQVAPISEENKYGNEVGDTCPIC 824


>gi|227498920|ref|ZP_03929059.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904371|gb|EEH90289.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 757

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/575 (21%), Positives = 214/575 (37%), Gaps = 78/575 (13%)

Query: 367 QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
            LS+C++     D +  IF    + A    Y GG G D + +   GAHI+    ++ G I
Sbjct: 72  TLSNCYVVEPPEDSIESIFDRAGKLARTYSYGGGCGIDISKLSPKGAHINNAAKQTSGSI 131

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485
            F+ + +     +     R+GA+   ++  H DV +F+ L+     D  +    N +  I
Sbjct: 132 SFMTLYSLVTE-LIGQNGRRGALMISIDCSHPDVVDFIKLKT----DLDKVTKANISVRI 186

Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
              FM+ V +N                     F + Y   E       +     + A  +
Sbjct: 187 SGDFMEAVKENRK-------------------FRLHYTRKETGETIESL-----VDAAEV 222

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS--SNLCTEITLNSSSEETAVCNLG 603
           +  +    ++   P   F D     +   +         N C E  L +       C LG
Sbjct: 223 FHLLAETNWDYAEPGALFWDRITSWNLLSNTKSFQFAGVNPCAEEPLPAG----GSCLLG 278

Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVID--INCHTIEKAKKSNHTHRAI 656
           S+NL     +       FD +     I  AVR L++V++  +  H +E+ ++S    R I
Sbjct: 279 SMNLAEFVKDPFTEEASFDQEGFKQAIHVAVRALNDVLEEGLPLHPLEEQRESVAKWRQI 338

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG    L  + + Y S EAV+        ++  AI++S  LA+ERG+Y  F     
Sbjct: 339 GLGIMGLGDMLLKMGLTYGSKEAVDFCHTLGFTMADTAIASSALLAKERGSYEQF----- 393

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                                 N T     +E  + VK+ G+RNS  + IAPT T++ + 
Sbjct: 394 ---------CAEEVMETPYFKANTT-----EETVQLVKSYGLRNSQLLTIAPTGTLSTML 439

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G+S  I+P Y N Y +                 L   D++ +     ++ +     +  +
Sbjct: 440 GISGGIEPIYANYYERKT-------------ESLHAADVYYKVYTPIVERYM--KQHDLK 484

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLM 895
               L     TA  +     I   +  Q+ ID + S  + +    + +  + +Y  A+  
Sbjct: 485 DDSQLPSYFVTAMTLPYEDRIAMQAAFQQHIDASISSTVNVPNSFTVEDTEHLYLLAYES 544

Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           G K     R     +   +T      K   +    
Sbjct: 545 GCKGVTIFRDGCKRAGILTTHVEDHKKEAPIAGEG 579


>gi|297584572|ref|YP_003700352.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus selenitireducens MLS10]
 gi|297143029|gb|ADH99786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus selenitireducens MLS10]
          Length = 855

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 129/725 (17%), Positives = 245/725 (33%), Gaps = 114/725 (15%)

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                      E       R    +     ++E     FY+ L + +F+ +   L+ +G+
Sbjct: 120 DTIDKPLEVYYEQIAKRNARGLSDVETNPEQREASFERFYHELVNMNFVPAGRVLYGAGS 179

Query: 364 RHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLG-------------------- 401
                  +C++   + D   GI    ++   +    GG+G                    
Sbjct: 180 HTDVTYFNCYVMPYIADSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKS 239

Query: 402 ---NDWTPVRGLGAHIHGTNGKSQGV-IPFLKVANDTAVAVNQGGKRKGAVCAYL--ETW 455
                W        H+    G  +G  +  L   +   +       +   +  YL  +  
Sbjct: 240 SGSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLSEQIE 299

Query: 456 HIDVEEFLD-----LRKNTGDDRRRTHDMNT----------------------------- 481
              ++  +         +  D+      +N                              
Sbjct: 300 DHQIKRLIQEKLKFTPLSEVDESMYQSIVNYKAIEGQGGFDPKVIRQAEDTLRAGGKYDV 359

Query: 482 -----------ANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYER 527
                      +  I   FM  V Q+  + L  P   +      + Y +E+    +  E 
Sbjct: 360 NNSEFLTGANISVCITKEFMDAVEQDRDYELRFPDVENYNEKEMEAYNREWHEYGDVREW 419

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCT 586
           +     I+ +RKI A  LW  +      +  P I F D  N  +    +   V ++N C 
Sbjct: 420 EQLGFGIRTYRKIKARELWELINICATYSAEPGIFFIDNANEMTNASAYGQKVVATNPCG 479

Query: 587 EITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E  L       +VCNL ++NL           D++KL  T+ T VR+ DNVID   + ++
Sbjct: 480 EQPLAPY----SVCNLAAVNLAEMADRTTKTVDFEKLKQTVATGVRMQDNVIDATPYFLQ 535

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
           +        R +GLG+MG    L      Y S    E+ D+  E I+  A   SVE+A+E
Sbjct: 536 ENTDQAKGERRVGLGVMGLHDLLIHTETTYGSEAGNELVDQIFETIAVTAYRESVEIAKE 595

Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
           +G++   +GS          +    A +RD        +   ++L + ++  G+RNS+ +
Sbjct: 596 KGSFPFLEGS----------NTEETAFLRDRFTQTGYMKKMPEDLLEDIRAYGIRNSHLL 645

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
            +APT +   + GVS  ++P +   Y +S   G F  V + ++ +               
Sbjct: 646 TVAPTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKAQILQDYLDE----------- 694

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883
                   + E   D L +   ++ E+ P    +     Q+W+D + S  +      +  
Sbjct: 695 --------HPEVSSDQLPEWFISSMELTPEAHADVQCVIQRWVDSSLSKTVNAPKGYTVD 746

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           ++  +Y + +  G K        S  + V     +  D     +   +  S      +  
Sbjct: 747 QVKRVYERLYNGGAKGGTVYVDGSRDSQVLTLKAEENDEYTVDLTGGETESEEKKTVMLV 806

Query: 943 SCTSD 947
              +D
Sbjct: 807 ETITD 811


>gi|257874881|ref|ZP_05654534.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257809047|gb|EEV37867.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 825

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/490 (22%), Positives = 190/490 (38%), Gaps = 43/490 (8%)

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYEN 524
            T  +       N +  + + FM+ V  +  + L  P   +        Y  ++    + 
Sbjct: 347 YTVKESDFLTGANISVCLTEEFMEAVKTDGWYELRFPDIDNYSEAEMAQYDAKWAEVGDV 406

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSN 583
            E  A   ++K +++I A  LW  +      +  P I F D  N  +    +   V ++N
Sbjct: 407 REWAAAGHKVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATN 466

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCH 641
            C E  L       AVCNL +INL       +   D+ KL  T++TAVR  DNVID+  +
Sbjct: 467 PCGEQPLTPY----AVCNLAAINLANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPY 522

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             +K ++     R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+EL
Sbjct: 523 FFDKNEQQAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIEL 582

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G++    G           +      +R +       +     +++ V   G+RNS
Sbjct: 583 AKEKGSFPFLIG----------KNDQETQALRKKFIDTGYMKKMPAHIREGVLRFGIRNS 632

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           + + +APT +   + GVS  ++P Y   Y +S   G F  +N+ +V         DE ++
Sbjct: 633 HLLTVAPTGSTGTMTGVSTGLEPYYSFSYYRSGRLGKFIEINAEIV---------DEYLM 683

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
                      + ER   +L     +A E+ P   +      Q+W+D + S  +      
Sbjct: 684 D----------HPERTKAELPAWFISAMELTPEEHVGVQCTIQRWVDSSISKTVNAPKGY 733

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +  ++  +YR  +  G K        S  S   +     +     V           +  
Sbjct: 734 TVSQVAKVYRDLYEGGAKGGTVYVDGSRDSQVLTLEAVENELTAQVEPLPVVQVDEPVAS 793

Query: 941 PSSCTSDTEC 950
              C     C
Sbjct: 794 GEIC---PIC 800



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 8/195 (4%)

Query: 308 HINGSRIEMPQAFF-----MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNS 361
               S IE P   F      RVA G++  E   ++R  E F+  + + + + +   L+ +
Sbjct: 110 KRRKSDIEKPLELFFEQVAHRVAKGISANEAHDQERFFEAFHQQIVAQNLIPAGRVLYGA 169

Query: 362 GTR-HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           GT       +CF+   + D   GI    QE   +    GG+G + + +R   + +HG +G
Sbjct: 170 GTNSQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSG 229

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S G + +L    +    V QGG R+GA    +  WH D+  F+  +             
Sbjct: 230 RSSGAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFILSKIQNPAVLLHLKKT 289

Query: 480 NTANWIPDLFMKRVT 494
            T   I  L  +++ 
Sbjct: 290 ITNATIKQLINEKLQ 304


>gi|15790595|ref|NP_280419.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|169236332|ref|YP_001689532.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
 gi|10581113|gb|AAG19899.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|167727398|emb|CAP14186.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
          Length = 1051

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 138/661 (20%), Positives = 243/661 (36%), Gaps = 99/661 (14%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EF +L++S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+
Sbjct: 146 EFQDLMASLSFMPNSPTLMNAGDELQQLSACFVDSPDDDITDIHQTAKEAAEVFQSGGGM 205

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  +  +R  G  +  T G + G + F++  +     + QGG R+GA  A +   H DV 
Sbjct: 206 GYAFWQLRPYGDTVGSTGGIASGPLTFMETFDQMCETIAQGGARRGAQMAVMRVSHPDVV 265

Query: 461 EFL------------------------------DLRKNTGDDRRRTH------------D 478
           EF+                              +  ++  D+  R              +
Sbjct: 266 EFIHAKNKDVSLAQTLKLNDPDDYTYTEFSEALEEARDLIDEDGRVPEHLRNAVEGHLSN 325

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM+ +     +T  +P        +  +E +  Y  Y         +   
Sbjct: 326 FNISVGVTDGFMEALEAGEEYTFTNPRT--GEAHIATEETKEMYSRYGLGHYVTPGEEL- 382

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW +++    E G P + + +  N               L T        EE  
Sbjct: 383 TLPAEELWSRIVEGAHENGEPGVIYLERVNDEHSFDVEEHPDHRILATNPCGEQPLEEYE 442

Query: 599 VCNLGSINLLAHFANNQFDY--------------------------DKLASTIRTAVRVL 632
            CNLG INL    A +  D+                          D     I    R L
Sbjct: 443 ACNLGHINLSTLAAQDAPDWRVWSQTHDFDTLEAGVSRFLDEAMDTDAFQRRIEMGTRFL 502

Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
           +NV+ ++   + + ++     R IGLG+MG       L + Y S E  EIA + M+ I+ 
Sbjct: 503 ENVVTMSDFPVPEIEQKVSEMRKIGLGVMGLAQLYIQLGVKYGSEEGNEIASQLMQTINH 562

Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752
            + +AS ELA ERG++  +  S +     P +          E A +             
Sbjct: 563 DSKTASHELALERGSFDEWDNSKFA---APTEYADWFEHHTGEDAADWADG--------- 610

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVVNSFLV 807
                +RN N   IAPT T + +   +   +P Y   Y K+              + + +
Sbjct: 611 ---YPIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDYFL 667

Query: 808 NELKQRDLWDEAMISDLKY------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
             L+  D+  +A+  + +        DG +  +  +PD + ++     ++         +
Sbjct: 668 RTLEDNDIDVQAVKEEAQTQMANNDFDG-VDGLTTVPDAIGELFVVTSDLSGKDHAAVQT 726

Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
             Q  +D A S      ++ S + +D +YR  +  G K     R  + +    +T     
Sbjct: 727 ACQNGVDSAISKTCNFPNDASVEDMDEVYRYIYDNGGKGVTVYRDGTRSKQVLTTRADNT 786

Query: 921 G 921
            
Sbjct: 787 E 787


>gi|257865281|ref|ZP_05644934.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871609|ref|ZP_05651262.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257799215|gb|EEV28267.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805773|gb|EEV34595.1| ribonucleotide-diphosphate reductase [Enterococcus casseliflavus
           EC10]
          Length = 825

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/490 (22%), Positives = 190/490 (38%), Gaps = 43/490 (8%)

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYEN 524
            T  +       N +  + + FM+ V  +  + L  P   +        Y  ++    + 
Sbjct: 347 YTVKESDFLTGANISVCLTEEFMEAVKTDGWYELRFPDIDNYSEAEMAQYDAKWAEVGDV 406

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSN 583
            E  A   ++K +++I A  LW  +      +  P I F D  N  +    +   V ++N
Sbjct: 407 REWAAAGHKVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATN 466

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCH 641
            C E  L       AVCNL +INL       +   D+ KL  T++TAVR  DNVID+  +
Sbjct: 467 PCGEQPLTPY----AVCNLAAINLANMADRQKGTVDFAKLKETVKTAVRFQDNVIDVTPY 522

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             +K ++     R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+EL
Sbjct: 523 FFDKNEQQAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIEL 582

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A+E+G++    G           +      +R +       +     +++ V   G+RNS
Sbjct: 583 AKEKGSFPFLIG----------KNDQETQALRKKFIDTGYMKKMPAHIREGVLRFGIRNS 632

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           + + +APT +   + GVS  ++P Y   Y +S   G F  +N+ +V         DE ++
Sbjct: 633 HLLTVAPTGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIV---------DEYLM 683

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
                      + ER   +L     +A E+ P   +      Q+W+D + S  +      
Sbjct: 684 D----------HPERTKAELPAWFISAMELTPEEHVGVQCTIQRWVDSSISKTVNAPKGY 733

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +  ++  +YR  +  G K        S  S   +     +     V           +  
Sbjct: 734 TVSQVAKVYRDLYEGGAKGGTVYVDGSRDSQVLTLEAVENELTAQVEPLSVVQVDEPVAS 793

Query: 941 PSSCTSDTEC 950
              C     C
Sbjct: 794 GEIC---PIC 800



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 8/195 (4%)

Query: 308 HINGSRIEMPQAFF-----MRVAMGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNS 361
               S IE P   F      RVA G++  E+  ++R  E FY  + + + + +   L+ +
Sbjct: 110 KRRKSDIEKPLELFFEQVAHRVAKGISANESHDQERFFEAFYQQIVAQNLIPAGRVLYGA 169

Query: 362 GTR-HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
           GT       +CF+   + D   GI    QE   +    GG+G + + +R   + +HG +G
Sbjct: 170 GTNSQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKSSVVHGVSG 229

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
           +S G + +L    +    V QGG R+GA    +  WH D+  F+  +             
Sbjct: 230 RSSGAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDIFAFILSKIQNPAVLLHLKKT 289

Query: 480 NTANWIPDLFMKRVT 494
            T   I  L  +++ 
Sbjct: 290 ITNATIKQLINEKLQ 304


>gi|13095638|ref|NP_076553.1| ribonucleotide reductase large subunit [Bovine herpesvirus 4]
 gi|12802588|gb|AAK07980.1|AF318573_60 ribonucleotide reductase large subunit [Bovine herpesvirus 4]
          Length = 793

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 151/722 (20%), Positives = 266/722 (36%), Gaps = 90/722 (12%)

Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMG--------------------- 327
                L  +  YD Y L   G     E    F+ R+++                      
Sbjct: 104 LNCGILAAKRFYDTYLLRTPGPNPIFESIPHFYTRISVFCAVQCLRFSYLKTTIQATIKK 163

Query: 328 -LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIF 384
               + +        F+  ++S    C+TP L ++G     L+SCF+    +  +   I 
Sbjct: 164 NNNREASTDMDIVHYFFGFIASQVVCCATPVLRSAGVESENLASCFIVSPEMYSETSTIT 223

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
                   L     G+G D          I       + +   LK+ N      N    R
Sbjct: 224 SLYSRLFPLLSSKSGVGMD----------ITSFANDQKNIHSCLKLINAHVEFFNDHNIR 273

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502
             +V  Y+E WH+ + EFL  +     D  R   +  A  +P LF K   ++    W LF
Sbjct: 274 PVSVATYIELWHVQIFEFLYAKVPENSD--RCASIFQAVCVPSLFFKLYEKDPMGSWHLF 331

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
            P +V  L  LYGKEFE  Y    +          +++   ++   ++  + +TG P++ 
Sbjct: 332 DPSDVPGLKLLYGKEFEDEYHKLVQSQL-----FVKEVPLKSIMFSLINTIIKTGSPYVI 386

Query: 563 FKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--------- 612
            K+  N     +  G  ++++NLC EI  + S    A C+L +I L              
Sbjct: 387 LKEAINQHHWCETQGEAINAANLCAEIVQH-SGRHVATCSLANICLPKCLEGLDFLTQCH 445

Query: 613 -----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   F +  L   +  AV  + N   +  H +    K     RA+G+G+ G     
Sbjct: 446 GGTPVKKTFSFQLLTRAVEAAV-FVINAAIVGGHCVLDEVKRGQGERAMGIGVQGLADVF 504

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDS 725
             L   Y   E+  +     E + + A+  S ++ +  G   +  F  S   +G+F    
Sbjct: 505 AELGYGYLDKESEILDRHIFECMYYSAVKTSHDIVRIGGGVPFEGFDRSKLKRGLFHWQE 564

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
             +             S+  W  L K +   G+ NS  +A+ PTA  + I G S++  P 
Sbjct: 565 WEIE-------DPMLISQDMWLNLGKSISQFGIFNSQFIALMPTAGTSQITGHSEAFYPF 617

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
           + N+  K +   +    N   +  +++RDL        +++++G +           +I 
Sbjct: 618 FANMSSKVSNKEEIMKPNITFLKSVRKRDLDT------VRFYNGDVSRFPEPLAKRYQIF 671

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK---KLDFIYRQAWLMGLKT-TY 901
             AF+  P   ++ A +R  ++DQ+QS +L+L E + K    L  +    + +GLKT  Y
Sbjct: 672 LNAFDYCPFEQMKRARQRAPFVDQSQSFSLFLKEENVKSASYLKNLLLYGYNLGLKTIMY 731

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPN---------SSTHSLGIPSSCTSDTECEV 952
           Y R +   +V          + +  P                 +    P    S  +C+ 
Sbjct: 732 YCRIQKEFTVSDFQCLDTGCQFDEDPDNQNKCEETHNKSQEPNYKTEAPCQLDSSPQCDC 791

Query: 953 CQ 954
           CQ
Sbjct: 792 CQ 793


>gi|309789876|ref|ZP_07684454.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oscillochloris trichoides DG6]
 gi|308228083|gb|EFO81733.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oscillochloris trichoides DG6]
          Length = 491

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 153/345 (44%), Gaps = 25/345 (7%)

Query: 597 TAVCNLGSINLL-AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              CNLGS+NL     +    D+D L + +  + R LDNVID N + + +    +   R 
Sbjct: 4   YDSCNLGSVNLGLFVTSKQTVDWDNLRTVVHASTRFLDNVIDANHYPLPQIGALSQRIRR 63

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG+   L  + IPYAS EA+ +A E M F+   +  AS ELA+ERG +  ++ S+
Sbjct: 64  IGLGVMGWADMLVKMGIPYASDEAIALAREVMAFVDEESKVASEELARERGTFPEWEQSV 123

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W                R + +  R  R              +RN N   +APT TI+ I
Sbjct: 124 WGP--------DETCARRPDGSRIRPFRK-------------LRNCNVTTVAPTGTISII 162

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S  I+P +   + +         VN   V + ++   + + ++  +    G I +  
Sbjct: 163 AGCSSGIEPLFAIAFWRHQADARMLDVNEQFVAQAQREGWYSQELMERIADS-GHIHH-P 220

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            +P +++++  TA +I P W + + +  Q+ +D A S  + + +E +   +   Y  A+ 
Sbjct: 221 EVPSEVQRVWTTAHDIAPEWHVRTQAAFQESVDSAISKTINMPNEATPDDVRAAYELAFN 280

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +G K     R  S ++   ST  G   K  A       +    + 
Sbjct: 281 LGCKGITVYRDGSRSNQVLSTGSGEKEKTAAPAPAPVVTEQPIMP 325


>gi|163784235|ref|ZP_02179159.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
 gi|159880498|gb|EDP74078.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga
           sp. 128-5-R1-1]
          Length = 464

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/566 (20%), Positives = 218/566 (38%), Gaps = 109/566 (19%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  F P KI  AI KA ++V               K LT++ + +L +  K 
Sbjct: 4   KIIKRDGKVVDFIPEKIQNAIFKAMLSVGKPDV-------KQAKELTKKVIEKLEESLKE 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E +QD VE  L++ G  K+ + Y+LYR++R+++R  +    +            
Sbjct: 57  KQIPTVEQVQDIVEQVLIEKGLSKVAKSYILYRQKRAEIRREKQQILNKKE--------- 107

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
                                  L ++  K                 D+    + +SR L
Sbjct: 108 -----------------------LDEIDKKF----------------DINALQVLASRYL 128

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
            +        + + L E++            +K    +      +      +E    ++ 
Sbjct: 129 AKDINGRIVESPKELFERVAIHTTIPSILYDEKVFSKKKLKNKQKDEEINEKEFTGLKIG 188

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
             S+  + +  L    K           L  +                        M   
Sbjct: 189 KYSLNQYHIEGLIRVYKRLNKEKHMKKSLSEIIK----------------------MIKK 226

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
            +  E EK   +++ L++   FM +TP L N G       +CF+  + D L  I   L+ 
Sbjct: 227 GQFNEYEKEIEDYFYLMTDKKFMPNTPVLVNFGRPLGMGMACFVLDIEDSLISIMETLKN 286

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
            A++ K  GG G +++ +R  G +I  TNG+S G I F+ + +     + QGG R+GA  
Sbjct: 287 AALIFKAGGGCGYNFSKLRPKGDYISTTNGRSSGPIAFMTLYDKMTEVIKQGGVRRGANM 346

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
             L++ H D+EEF+  +K    + ++  + N + ++ + F     +N  + L +P +   
Sbjct: 347 GILDSDHPDIEEFITAKK----ENKQLTNFNISVFLKEDFWNYYKKNKPYPLINPRD--- 399

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                                    KV++ I+  AL+  ++   +E+  P + F D  N 
Sbjct: 400 ------------------------GKVWKYINPKALFNMIVYRGWESAEPGLLFDDNINK 435

Query: 570 RSP-QQHVGVVHSSNLCTEITLNSSS 594
            +P  +H G ++++N C E+ L  + 
Sbjct: 436 YNPLLKHFGKIYATNPCGEVVLYPNE 461


>gi|82778047|ref|YP_404396.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           dysenteriae Sd197]
 gi|309786254|ref|ZP_07680882.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
 gi|81242195|gb|ABB62905.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella
           dysenteriae Sd197]
 gi|308925999|gb|EFP71478.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella
           dysenteriae 1617]
          Length = 616

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 156/610 (25%), Positives = 254/610 (41%), Gaps = 30/610 (4%)

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279
             R   +K  R+ +        +           +     + EG     +        ++
Sbjct: 16  AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRNFVI 73

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338
            L             +LG    Y  Y L   +G R    + F  RV M         E  
Sbjct: 74  TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397
           A++  + + S  F  +TPT  N G +   +L SCFL  + D++  I  A+     L+K  
Sbjct: 132 ALQLTDEMLSGRFQPATPTFPNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191

Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457
           GG+    + +R  GA I     +S GVIP +K+  D     NQ G R+GA   YL   H 
Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251

Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517
           D+  FLD ++   D++ R   ++    IPD+      +NA   LFSP    D+  +YGK 
Sbjct: 252 DILRFLDTKRENADEKIRIKILSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308

Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
           F   A   +  +    E    + ++A   +++++ + FE+G+P+I ++D  N  +P    
Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLVEIQFESGYPYIMYEDTVNRANPI--A 366

Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629
           G ++ SNLC+EI   +S+ E           +  S NL +    +  D    A T+ TAV
Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTCTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426

Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           R L  V D+ +  ++   +  N    AIGLG M     L    I Y SPEA++  +    
Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740
            I++HA+  S+ LA+ER   ++ FK S +  G +                 EL       
Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546

Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798
             +   W +L+  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G 
Sbjct: 547 LPTHEMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606

Query: 799 FTVVNSFLVN 808
                 F+ N
Sbjct: 607 VYYPAPFMTN 616


>gi|322372257|ref|ZP_08046798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haladaptatus paucihalophilus DX253]
 gi|320548266|gb|EFW89939.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haladaptatus paucihalophilus DX253]
          Length = 1028

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/687 (19%), Positives = 248/687 (36%), Gaps = 99/687 (14%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              E    EF +L+    F+ ++PTL N+G    QLS+CF+ +  DD+  I    +E A 
Sbjct: 140 DHVESVRDEFGDLMEGLSFIPNSPTLMNAGDELQQLSACFVDSPGDDITDIHQTAKEAAE 199

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           + +  GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +
Sbjct: 200 VFQSGGGMGYAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVM 259

Query: 453 ETWHIDVEEFL------------------------------DLRKNTGDDRRRTH----- 477
              H DV +F+                              +  +   DD  R       
Sbjct: 260 RVSHPDVIQFIHAKNKDVSLANTLRLNDPDDYTHTSFKEALEEARELIDDDGRVPKHLRN 319

Query: 478 -------DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
                  + N +  + D FM+ +  +  +   +P    +   +  +  +  Y+ +     
Sbjct: 320 AAEGHLSNFNISVGVTDDFMEALYNDEEFVFTNPRT--EEPHVATEHTKEMYDMFGLGDY 377

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
               +V   I A  LW +++   +E G P I + +  N +             L T    
Sbjct: 378 VTPGEVL-SIPAKVLWDRIVEGAWENGEPGIIYLERVNKQHSFDVEKHPDHRILATNPCG 436

Query: 591 NSSSEETAVCNLGSINLLA-------HFANNQF---------------------DYDKLA 622
               EE   CNLG INL          +                          D+++  
Sbjct: 437 EQPLEEYEACNLGHINLSTLADLDAPDWRVWYDENGDNYGSLSEAVDAFLREGIDWEEFD 496

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             I    R L+NV+ ++   +EK ++     R IGLG+MG       L + Y S E  EI
Sbjct: 497 HRIEYGTRFLENVVTMSDFPVEKIEQKVRDMRKIGLGIMGLAQLYIQLGVRYGSEEGNEI 556

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742
           A + M  I+  +  AS ELA+ERG+++ ++ S +     P +      +      ++   
Sbjct: 557 AKQLMTHINHESKWASHELAEERGSFNDWEDSKYA---NPTEYAEWFEKQTG---LDAEK 610

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSG 797
                 ++         N N   IAPT T + +   +   +P Y   Y K+         
Sbjct: 611 WKDGFAVR---------NHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDE 661

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISD----LKYHDGS-IGNIERIPDDLKKIHATAFEID 852
                + + +  L+  D+  +A+  +    +  ++ S +  +E +PD + ++     ++ 
Sbjct: 662 MLVEFDDYFLRTLEANDIDVDAVKEEAQTQMANNEFSGVEGLETVPDAIGELFVVTGDLT 721

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
                      Q+ +D A S         S + +D +YR  +  G K     R  + +  
Sbjct: 722 GKQHAAVQCSCQQGVDSAISKTCNFPNSASKEDMDEVYRYIYDHGGKGVTVYRDGTRSKQ 781

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSL 938
             +T        +     +        
Sbjct: 782 VLTTRADNAEFADEEEAAETIVEQIEE 808


>gi|257869921|ref|ZP_05649574.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804085|gb|EEV32907.1| ribonucleotide-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 831

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 194/482 (40%), Gaps = 43/482 (8%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  + + FM  V ++  + L  P   +   +    Y  ++    +  E +A   ++K
Sbjct: 361 ANISVCLTEEFMDAVKKDDWYALRFPDIDNYSEEEMAEYDAKWAEVGDVREWEAAGHKVK 420

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
            +++I A  LW  +      +  P I F D  N  +    +   V ++N C E  L    
Sbjct: 421 TYQRIRARELWNLITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQPLTPY- 479

Query: 595 EETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              AVCNL ++NL     +     D+ KL  T++TAVR  DNVID   +  +K ++    
Sbjct: 480 ---AVCNLAAVNLANMADHQTGTVDFAKLRETVKTAVRFQDNVIDATPYFFDKNERQAKG 536

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S E  ++ D+  E I+  A  AS++LA+E+G++    
Sbjct: 537 ERRVGLGIMGLADLLIYCEKTYGSAEGNQLVDQIFETIAITAYEASIDLAKEKGSFPFLI 596

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G                  +R++       +     +++ V   G+RNS+ + +APT + 
Sbjct: 597 G----------KDDQETQALREKFIDTGYMKKMPAHIREGVMQFGIRNSHLLTVAPTGST 646

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P Y   Y +S   G F  +N+ +V E                       
Sbjct: 647 GTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAAIVEEYLAN------------------- 687

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           + E+  D L     +A E+ P   +      Q+W+D + S  +      S  ++  +Y  
Sbjct: 688 HPEQDKDQLPDFFISAMELSPEEHVGVQCAIQRWVDSSISKTVNAPKGYSVSQVAKVYMD 747

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951
            +  G K        S    +  TL+ +D ++N       +  T     P        C 
Sbjct: 748 LYDGGAKGGTVYVDGSR-DSQVLTLEAIDNEINTQVEPAEDQFTTQTNEPVISGD--ICP 804

Query: 952 VC 953
           +C
Sbjct: 805 IC 806



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 308 HINGSRIEMPQAFF-----MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
               + IE P   +      RVA G++ KE E+E    +FY  ++  + + +   L+ +G
Sbjct: 114 KRRKNEIEKPLELYFEQIARRVARGISDKELEQELFLEQFYQQIAEQNLIPAGRVLYGAG 173

Query: 363 TR-HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           T       +CF+   + D   GI    QE   +    GG+G + + +R     +HG +G+
Sbjct: 174 TNSQVTYFNCFVMPFIHDSRKGIAVHRQEVMEIMSRGGGVGTNGSTLRPKACVVHGVSGR 233

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           S G + +L    +    V QGG R+GA    +  WH D+  F+
Sbjct: 234 SSGAVSWLNDLANLTNLVEQGGSRRGAQMIMMADWHPDILAFI 276


>gi|300697572|ref|YP_003748233.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           solanacearum CFBP2957]
 gi|299074296|emb|CBJ53843.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia
           solanacearum CFBP2957]
          Length = 611

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 131/646 (20%), Positives = 227/646 (35%), Gaps = 83/646 (12%)

Query: 283 NDLKYERDFA---FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
             +    D A      +   +L +RY      +R       F R A  L+  E    +  
Sbjct: 2   KAVDRNLDEAREALPSISAAVLANRYLAPGETTRR----DVFKRAARALSGAEAPDRRGR 57

Query: 340 VE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM----- 392
           +   FY  +                 R   + +CF+  +     G    + +        
Sbjct: 58  IARLFYANMLRGAIGAGRIMANAGRARDVTMVNCFVHPIGSGASGAVATVADVDRALADA 117

Query: 393 --LAKYSGGLGNDWTPVRGLGAHI--HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
                  GG+G D++PV    A+    G +  + GV   +   +     +     R GA 
Sbjct: 118 RTTLLMGGGVGYDFSPVAPRDANADGAGQDNNAGGVCASIDRFDAACATLPFADTRGGAQ 177

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            A L   H D+ +F+  ++     RRR    N +  I + FM+ V  +A W L       
Sbjct: 178 MAVLRCDHPDLLDFVMAKRG----RRRWSTFNVSVAITNAFMQAVAGDAPWMLRHGARPG 233

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                 G                     +  + A  LW+ ++    ++  P + F D  N
Sbjct: 234 AQRLADG-----------AHRLVDGDWCYATLPARRLWQTLVQCARDSAEPGLLFIDTIN 282

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKL 621
             +    +  + ++N C E  L         C LG I+L               FD+  L
Sbjct: 283 AANALASIETIAATNPCGEQPLPP----WGSCVLGPIDLSRLVHCPFGVGGAPRFDFAGL 338

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
           A   R  VR+LDN ID+    + +      T R IG+G+ G   AL ++ + Y +P A  
Sbjct: 339 AERARVQVRMLDNAIDLTRWPLPEHMHEARTKRRIGVGVTGLADALAMMCLSYGTPAARH 398

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A    + +   A +AS  LA ERGAY +F  +                     L     
Sbjct: 399 LATRIAQCLRDQAYAASSALAAERGAYPAFDAARI-------------------LGAGSF 439

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDF 799
           +      ++  +   G+RNS+ ++ APT +++       S  I+P+Y  +Y++    G  
Sbjct: 440 ASRLPGAVRDAIALHGLRNSHLLSFAPTGSVSLAFADNCSSGIEPAYDWVYLRRLRVG-- 497

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
                                I +  Y        +R P         A ++DP   I  
Sbjct: 498 -------------HGAPRAYRIENRAYRLFRSLRGDRAPQ--PAYFVKAVDVDPAEHIAM 542

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            +  Q ++D + S  + +  + +  ++D ++ QAW  GLK     R
Sbjct: 543 VAALQPFVDASISKTVIVPPDITADRVDALFFQAWRTGLKGITIFR 588


>gi|294101134|ref|YP_003552992.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminobacterium colombiense DSM 12261]
 gi|293616114|gb|ADE56268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminobacterium colombiense DSM 12261]
          Length = 858

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 155/753 (20%), Positives = 273/753 (36%), Gaps = 147/753 (19%)

Query: 274 MDFDLVYLANDLKYERDFAFEYL-GLQILYDRYFLHINGSRIEMPQAFFMR-VAMGLALK 331
            + DL  L +  +        +L   +    RY     G R E     F R VA  +A  
Sbjct: 11  HEIDLDVLEHPAEPRLSENATWLLAQRYFIHRYDEEEGGVRQERSFEEFARRVARIIASA 70

Query: 332 ETEKEKR------------AVEFYNLLSSFHFMCSTPTLFNSG----------------- 362
           ET    +                +N + +  F+ ++P LF +G                 
Sbjct: 71  ETLYLDKNDAKSLLWLQTLEKNIFNDILNRRFLFNSPCLFGAGAGMTTDPKLSTLVYKSP 130

Query: 363 ---------------TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
                          T++ QL +CF+  +PD + GIF ++++ ++++K+ GG+G ++  +
Sbjct: 131 DHMTFEEYETLLASKTKNQQLFACFVIDIPDSIEGIFDSVKDASIISKFGGGVGGNFGWL 190

Query: 408 RGLGAHIHGTNG-KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           R  GA I+G  G ++ G I F++  N     V QGGKR+ A+   L   H D+ +F+D +
Sbjct: 191 REKGAGINGGTGGQASGPISFMETWNTMGSVVVQGGKRRAALMGMLFDNHPDIMDFIDAK 250

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                +  +    N +  + D  +K V +   +                           
Sbjct: 251 T----EENKLSYFNISVCVSDALLKAVEEEGDFP-------------------------- 280

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS--PQQHVGVVHSSNL 584
               R +  V + + A  LW K+    ++ G P + F D  N  +         + S+N 
Sbjct: 281 -LISRIDGSVAKTVKAKDLWNKLSESAWKRGDPGVFFIDRANADNLLKLDPEWRIESTNP 339

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINC 640
           C E  L +       CNLGSIN+ A   +      FD D     +  ++  LD VID   
Sbjct: 340 CGEQPLPNY----TSCNLGSINVEAFVTSKGGLPAFDTDGFVDQVYRSIYYLDLVIDACS 395

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           + + + ++     R +GLG+MG   A  LL + Y      E      E ++  A+ A+ E
Sbjct: 396 YPLPRIEERTKRIRPVGLGVMGLADAAILLGMRYGGERFDEYCTSLGESMAAAALCATEE 455

Query: 701 LAQERGAYSSFKGSL---------------------WDQGVFPIDSIGLLAEVRDELAMN 739
           +    G     +  L                     W +     D I L+A +R    + 
Sbjct: 456 IVSVIGKAPFDESHLVKDLFHKFRDETGQKELFTAEWLKSTTIEDIISLIALMRGSETVP 515

Query: 740 RT------------------SRLPWDELKKRVKTIG-MRNSNCMAIAPTATIANICGVSQ 780
            T                   RL   +   +    G +RNS  ++IAPT +I+ +   S 
Sbjct: 516 YTLINAIESIVNNEGLGSEEERLAKVKDVLKALESGQIRNSRRLSIAPTGSISMLMDTSS 575

Query: 781 SIDPSYQNLYVKS--NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            I+P++   + +      G+   +  F    L       E +  +LK           I 
Sbjct: 576 GIEPNFAWTWTRRIIKKDGEGHELREFCHKLL------SEELHQELKQTG-------CIS 622

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
           D     + TA++I     +       ++ID   S  + L      + +  +Y   + +G 
Sbjct: 623 DPT---YVTAYDISTDEHVAVTGIFSRYIDSGISKTVNLPYSADVEDVQKVYEMCYKLGT 679

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930
           K     R  S ++      K  +G  +   V  
Sbjct: 680 KGITIYRDGSRSAQPIEVKKKEEGVPHTSKVKQ 712


>gi|52550429|gb|AAU84278.1| ribonucleotide reductase large subunit [uncultured archaeon
           GZfos9C4]
          Length = 914

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 90/319 (28%), Positives = 151/319 (47%), Gaps = 40/319 (12%)

Query: 597 TAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNLGSIN+     +     D+++L   I  +V+ LD+VID+N + + + +K    +R
Sbjct: 605 YDSCNLGSINVSKFVKSGDGEIDWERLREVICISVKFLDDVIDVNRYPLPEIEKMTKANR 664

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IGLG+MGF   L  L I Y S +A+   ++ M+FI+  A   S EL  ERG++S+F+ S
Sbjct: 665 KIGLGIMGFAELLIKLGIAYDSKDALSTGEKLMQFITNEARRCSTELGLERGSFSNFELS 724

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
           +W+                                    K   MRN+    IAPT TI+ 
Sbjct: 725 VWNS-----------------------------------KYEAMRNATVTTIAPTGTISI 749

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           I G S  I+P +   +V++ M G    +N       K+R  + + +I+++    GS+ +I
Sbjct: 750 IAGCSSGIEPIFAVAFVRNVMGG-MLEINKLFEEIAKERGFYSKELITEIAKC-GSVQDI 807

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
           + +P D+K++  TA +I P W +   +  QK+ D A S  + L  + +   +  ++  A+
Sbjct: 808 DGVPGDIKRVFVTALDISPEWHVRMQAAFQKYTDNATSKTVNLPSDATWGDVKKVFLLAY 867

Query: 894 LMGLKTTYYLRSRSATSVE 912
            +  K     R  S   V 
Sbjct: 868 KLKCKGITIYRYGSKEQVL 886



 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 140/305 (45%), Gaps = 40/305 (13%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVE 341
           D       +++L  RY L    G  IE P   F RVA  +A  E          ++    
Sbjct: 19  DLKLSLNAVEVLKRRYLLKNELGGVIETPSQMFKRVAKAIARAELNYGKSKEEVKEIERR 78

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           FY L+ +  F+ ++PTL N+GT   QL++CF+  V D + GIFGA+++ A + +  GG G
Sbjct: 79  FYLLMRNLEFLPNSPTLMNAGTELGQLAACFVLPVEDSIGGIFGAVKKMAKIHQSGGGTG 138

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             ++ +R  G  +  T G + G + F++V +     + QGGKR+GA    L   H D+ E
Sbjct: 139 FSFSRLRPKGDVVKSTGGVASGPVSFMRVFDVATDVIKQGGKRRGANMGILNAEHPDILE 198

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           F+  +     +R    + NT+  + D FM+ V +N  + L +P                 
Sbjct: 199 FIRAK-----ERGEFANFNTSVAVTDEFMRAVERNDEYGLVNPRT--------------- 238

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                           ++I A  ++ +++T  ++TG P I F D  N R+    VG + +
Sbjct: 239 ------------KGEVKRIKAREVFNEIVTYAWKTGDPGIVFMDEINRRNTIPAVGKIEA 286

Query: 582 SNLCT 586
           +N C 
Sbjct: 287 TNPCV 291


>gi|313203094|ref|YP_004041751.1| ribonucleoside-diphosphate reductase, adenosylcobalamiN-dependent
           [Paludibacter propionicigenes WB4]
 gi|312442410|gb|ADQ78766.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Paludibacter propionicigenes WB4]
          Length = 851

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 132/674 (19%), Positives = 249/674 (36%), Gaps = 99/674 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLALKETEKEK--RAVEFYNLL 346
           F  + L  ++   +Y L  + G+  E+ P     R+A  +A  E +        E + L 
Sbjct: 19  FKGDDLATKVWATKYALKDSFGNTYELNPDDMHRRLAKEIARIEKKYPNPLSEDELFELF 78

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++    +         Q   LS+CF+       D    I    +E   L K  GG+
Sbjct: 79  RDFKYIVPQGSPMTGIGNDFQVASLSNCFVIGFDGDSDSYGAIIKIDEEQVQLMKRRGGV 138

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D E
Sbjct: 139 GHDLSHIRPKGSPVKNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPDSE 197

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D +     +  +    N +  + D FMK    N  +T   P    +           
Sbjct: 198 TFIDAKM----ESGKVTGANISVKLHDDFMKAAINNETYTQQYPVTSENPW--------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                            + + A A+W+K++   +++  P I F D     S       + 
Sbjct: 245 ---------------FTKNVDANAIWKKIVHNAWQSAEPGILFWDTITRESVPDCYADLG 289

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L +INL ++  N       FD++     +  A R++D++
Sbjct: 290 YRTVSTNPCGEIPLCPYDSCRLLAINLYSYINNPFTPQASFDFELFHKHVGLAQRIMDDI 349

Query: 636 IDIN------------------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                             EK K      R  G+G       L  L 
Sbjct: 350 IDLEMEKIDKIIAKIESDPEDEEIKNTEFQLWEKIKTKTSQGRRTGVGTTAEGDMLAALG 409

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
             Y + EA + +++  + ++  A  +SV +AQERGA+S +     +   +          
Sbjct: 410 FRYGTEEATDFSEKVHKAVALAAYRSSVTMAQERGAFSVYDAKREENNPYIQR------- 462

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
                      R    +L + +   G RN  C+ IAPT T + +   +  ++P +  +Y 
Sbjct: 463 ----------LREADPQLYEDMAKYGRRNIACLTIAPTGTTSIMTQTTSGVEPVFMPVYT 512

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISD------LKYHDGSI------GNIERIPD 839
           +          N  +    +  D W+E ++        ++ ++ S         ++ I  
Sbjct: 513 RRRKVNP-NDKNVRVDFIDENGDSWEEYVVFHHKFVTWMEANNYSTTKRYTKEEVDEIVA 571

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
                 ATA ++D +  ++   R QKW+D + S+ + L  + + + +  +Y +AW  G K
Sbjct: 572 KSPYYKATANDVDWLKKVQMQGRIQKWVDHSISVTINLPADATEELVGKLYEEAWRCGCK 631

Query: 899 TTYYLRSRSATSVE 912
                R  S   V 
Sbjct: 632 GVTVYRDGSRAGVL 645


>gi|295399141|ref|ZP_06809123.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978607|gb|EFG54203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 591

 Score =  243 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 187/437 (42%), Gaps = 40/437 (9%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  +   FM+ V ++  + L  PD      +   +Y +++    +  E +     ++
Sbjct: 102 ANISVCLTKEFMEAVEKDEEYELRFPDVETYSEEEMRIYNEKWHEVGDVREWEKMGYRVR 161

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
           V+RKI A  LW+ +      +  P I F D  N  +  + +   V ++N C E  L    
Sbjct: 162 VYRKIRARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPY- 220

Query: 595 EETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL +INL           DY+KL  T+   VR+ DNVID   + +E+ KK    
Sbjct: 221 ---SVCNLAAINLANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALG 277

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG+MG    L      Y S E  ++ DE  + I+  A  AS+ELA+E+G++    
Sbjct: 278 ERRIGLGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFPFLV 337

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G           +     ++R+        +   +++++ +   G+RNS+ + +APT + 
Sbjct: 338 G----------KTEEETQKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVAPTGST 387

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  V + +V E   +                   
Sbjct: 388 GTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDK------------------- 428

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           + E  P++L     TA ++ P    +     Q+W+D + S  +      + +++  +Y +
Sbjct: 429 HPEADPNNLPHWFVTAMDLSPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYER 488

Query: 892 AWLMGLKTTYYLRSRSA 908
            W  G K        S 
Sbjct: 489 LWRGGAKGGTVYVDGSR 505


>gi|312110256|ref|YP_003988572.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y4.1MC1]
 gi|311215357|gb|ADP73961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y4.1MC1]
          Length = 591

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 187/437 (42%), Gaps = 40/437 (9%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  +   FM+ V ++  + L  PD      +   +Y +++    +  E +     ++
Sbjct: 102 ANISVCLTKEFMEAVEKDEEYELRFPDVETYSEEEMRIYNEKWHEVGDVREWEKMGYRVR 161

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
           V+RKI A  LW+ +      +  P I F D  N  +  + +   V ++N C E  L    
Sbjct: 162 VYRKIRARELWKLINICATYSAEPGIFFIDNANEMTNARAYGQKVVATNPCGEQPLAPY- 220

Query: 595 EETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL +INL           DY+KL  T+   VR+ DNVID   + +E+ KK    
Sbjct: 221 ---SVCNLAAINLANMVDKEKKVVDYEKLKRTVEIGVRMQDNVIDATPYFLEENKKQALG 277

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IGLG+MG    L      Y S E  ++ DE  + I+  A  AS+ELA+E+G++    
Sbjct: 278 ERRIGLGVMGLADLLIYCEKEYGSEEGNKLVDELFKTIATTAYRASIELAKEKGSFPFLV 337

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G           +     ++R+        +   +++++ +   G+RNS+ + +APT + 
Sbjct: 338 G----------KTEEETQKLREAFINTGYMKRMPEDIRQDILKYGIRNSHLLTVAPTGST 387

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  V + +V E   +                   
Sbjct: 388 GTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDK------------------- 428

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           + E  P++L     TA ++ P    +     Q+W+D + S  +      + +++  +Y +
Sbjct: 429 HPEADPNNLPHWFVTAMDLSPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYER 488

Query: 892 AWLMGLKTTYYLRSRSA 908
            W  G K        S 
Sbjct: 489 LWRGGAKGGTVYVDGSR 505


>gi|331668937|ref|ZP_08369785.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
 gi|331064131|gb|EGI36042.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
          Length = 375

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 150/370 (40%), Gaps = 16/370 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I 
Sbjct: 5   LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64

Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++  LI ++ P+Y  + AR  +  LR++                   LY       +E G
Sbjct: 65  AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321
                L E   + +   +   + ++RD  F Y  ++ L  +Y     + G   E  Q  +
Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173

Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379
           + VA  L        + +    FY+ +S+F     TP +    T   Q SSC L    D 
Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I               G+G +   +R LG+ I G      G IPF K       + +
Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    
Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353

Query: 500 TLFSPDEVSD 509
           TLFSP +V  
Sbjct: 354 TLFSPSDVPG 363


>gi|76802311|ref|YP_327319.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas
           pharaonis DSM 2160]
 gi|76558176|emb|CAI49764.1| ribonucleoside-diphosphate reductase, alpha subunit 2 [Natronomonas
           pharaonis DSM 2160]
          Length = 1042

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 136/681 (19%), Positives = 239/681 (35%), Gaps = 101/681 (14%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F   + S  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG+G
Sbjct: 149 FQEQMESLSFMPNSPTLMNAGDELQQLSACFVDSPEDDIDDIHQTAKEAAQVFQSGGGMG 208

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV +
Sbjct: 209 YAFWRLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRISHPDVIQ 268

Query: 462 FL------------------------------DLRKNTGDDRRRTH------------DM 479
           F+                              +  +   D+  +              + 
Sbjct: 269 FIHAKNKDVSLAETLRLNDPDDFTHNSFQEALEEARELIDEDGKVPKHLRNAVEGHLSNF 328

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D FM+ +     +T  +P    D   +   E +  Y+ +    D  E+     
Sbjct: 329 NISVGVTDGFMEALKNGEEFTFTNPRT--DEPHIATPETKELYDMF-GLGDHVEVGEELS 385

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           I A  LW  M+    E G P + + +  N               L T        EE   
Sbjct: 386 IPATKLWEHMIEGAHENGEPGVIYLERVNKEHSFDVEEHPDHQILATNPCGEQPLEEYEA 445

Query: 600 CNLGSINLLAHFANNQFDY----------------------------DKLASTIRTAVRV 631
           CNLG INL      +  D+                            + L   I    R 
Sbjct: 446 CNLGHINLSTLADLDAPDWRVWYDEHGDDYETLADAVDAFLEEAIDFEALDGRIELGTRF 505

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+NV+ ++   ++K ++     R IGLG+MG       L I Y S E  E+A + M  I+
Sbjct: 506 LENVVTMSDFPVDKIEQKVREMRKIGLGVMGLAQLYIQLGIKYGSEEGNEVARQLMRHIN 565

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +   S ELA+ERG +  +  S +             AE R+                 
Sbjct: 566 HGSKWTSHELAEERGVFDEWDKSKYAN----------PAEYREWFEKQTGLDADEWADGF 615

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVVNSFL 806
            ++     N N   IAPT T + +   +   +P Y   Y K+              + + 
Sbjct: 616 AIR-----NHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDYF 670

Query: 807 VNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           +  L++  L  EA+  + +        DG I  +  +PD + ++  T   +         
Sbjct: 671 LRVLEENGLDVEAVKEEAQEQMATNEFDG-IDGLSTVPDAIGELFVTTGALSAKQHAGVQ 729

Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
              Q+ +D A S  +   ++ + +    ++   +  G K   Y R  + +    +T    
Sbjct: 730 VACQEGVDSAISKTVNAPNDSTVEDAKDVFEYIYDHGGKGVTYYRDGTRSKQVLTTRAQN 789

Query: 920 DGKLNAVPVTDPNSSTHSLGI 940
               +        +   ++  
Sbjct: 790 TEFADMDEAEAAEAIVENIEE 810


>gi|196248885|ref|ZP_03147585.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. G11MC16]
 gi|196211761|gb|EDY06520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. G11MC16]
          Length = 596

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 114/510 (22%), Positives = 205/510 (40%), Gaps = 53/510 (10%)

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTAN------------WIPDLFMKRVTQNAGWTLFSP 504
            D   F +      +++ RT    T +             +   FM+ V  +  + L  P
Sbjct: 73  PDYGGFTEEIIKDAEEKLRTGGTYTVHNPDFLTGANISVCLTKEFMEAVENDDEYALRFP 132

Query: 505 D---EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           D      +   +Y +++    +  E +     ++V+RKI A  LW+ +      +  P I
Sbjct: 133 DVETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIRARELWKLINICATYSAEPGI 192

Query: 562 TFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618
            F D  N  +  + +   V ++N C E  L       +VCNL +INL           DY
Sbjct: 193 FFIDNANDMTNARAYGQKVVATNPCGEQPLAPY----SVCNLAAINLANMVDKERKVVDY 248

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL  T+   VR+ DNVID   + +E+ KK     R IGLG+MG    L      Y S E
Sbjct: 249 EKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIGLGVMGLADLLIYCEKEYGSEE 308

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             ++ DE  + I+  A  AS+ELA+E+G++    G          ++     ++R+    
Sbjct: 309 GNQLVDELFQTIATTAYRASIELAKEKGSFPFLVG----------ETEEETRQLREAFIN 358

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
               +   +++++ +   G+RNS+ + +APT +   + GVS  ++P +   Y +S   G 
Sbjct: 359 TGYMKRMPEDIRQDILQYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFAYYRSGRLGK 418

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  V + +V E   +                   + E  P+ L     TA ++ P    +
Sbjct: 419 FIEVKADIVQEYLDK-------------------HPEADPNHLPHWFVTAMDLSPEAHAD 459

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
                Q+W+D + S  +   +  + +++  +Y + W  G K        S    +  TLK
Sbjct: 460 VQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLWRCGAKGGTVYVDGSR-DAQVLTLK 518

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
             +  +       P  +       +    D
Sbjct: 519 AEENTVEEQLELIPEETEEQAKKRTVVLVD 548


>gi|37651591|ref|NP_932465.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t]
 gi|34732891|gb|AAQ81429.1| hypothetical protein 44RRORF110C [Aeromonas phage 44RR2.8t]
          Length = 570

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 162/632 (25%), Positives = 248/632 (39%), Gaps = 125/632 (19%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           +   G  +    Y         E  +  F RVA  LA  +   E     +++LL S    
Sbjct: 27  YTTQGWSMFKKNYQYKG-----ETVRGAFRRVASTLAKHDIRPE-AEERYFDLLWSGKLA 80

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TP   N+GT      SC  + V D +   +    E AMLAK   G  +    +R  G+
Sbjct: 81  MATPVFCNTGTDRGMPVSCAGSYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGS 140

Query: 413 HIHGTNGKSQGVIP-FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            I  ++ K+ G++P F    N        G  R+G    Y++  H D             
Sbjct: 141 DISTSHNKADGLVPVFDNFVNTKTKVAAAG--RRGEWAGYVDFSHGDF------------ 186

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                                      W L      +      G  FE   E+YE+   R
Sbjct: 187 ---------------------------WELQGYVLKNPASAHVGWVFEK--EDYEKLKAR 217

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEI 588
               + R       W +++ M   TG  ++      N  +PQ        + SS LCTEI
Sbjct: 218 DPEYMAR-------WNELMYMRARTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEI 270

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI--------DINC 640
            L S    T  C L S+N+         D       I+ +VR LD+V         +++ 
Sbjct: 271 ALPSDDMHTFTCILSSLNVSLWDEITADD-------IKWSVRFLDSVCSEFLAKAKELSY 323

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
            T+ KA +     RA+GLG +GF + L +  I + S  A  + ++    I   A   S E
Sbjct: 324 DTLHKAIRFTEKARALGLGTLGFHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRE 383

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E G     KG+                                          GMRN
Sbjct: 384 LAEEYGEPEWCKGT------------------------------------------GMRN 401

Query: 761 SNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE- 818
           +  + IAP  + A + G VSQ ++P   N +++ + +GDF   N  L   LK R    E 
Sbjct: 402 ATLITIAPNMSSALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEI 461

Query: 819 -AMISDLK-YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             ++ D+  YH+GS+ +++ + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+
Sbjct: 462 QELMEDIATYHNGSVQHLDILTDHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLF 521

Query: 877 L-DEPSGKKLDFIYRQAW--LMGLKTTYYLRS 905
              +     +  ++R A+     LK+ YYLRS
Sbjct: 522 FSADEKESVIASVHR-AFMDDPRLKSLYYLRS 552


>gi|205374047|ref|ZP_03226847.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           coahuilensis m4-4]
          Length = 849

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/489 (22%), Positives = 193/489 (39%), Gaps = 47/489 (9%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  + D FMK V ++  + L  P       +    Y + +    +  E +     ++
Sbjct: 369 ANISVCLTDDFMKAVEEDRDYELRFPDVESYNEEQMKYYNENWHQVGDVREWEKQGYAVR 428

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
            +R I A  LW  +      +  P I F D  N ++    +   V ++N C E  L    
Sbjct: 429 TYRTIRAKELWNLINICATYSAEPGIFFIDNANDKTNATAYGQKVVATNPCGEQPLAPY- 487

Query: 595 EETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL +INL       +   D++KL  T+   VR+ DNVID   + +E  KK    
Sbjct: 488 ---SVCNLAAINLAEFANKESKTVDFEKLKQTVAIGVRMQDNVIDATPYFLEDNKKQALG 544

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S E  ++ D+  E I+  A   S++LA+E+G++   +
Sbjct: 545 ERRVGLGVMGLADLLIYCEKEYGSEEGNQLVDQVFEVIATTAYRESIDLAKEKGSFPFLE 604

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           GS          +      +R         +   +++++ + T G+RNS+ + +APT + 
Sbjct: 605 GS----------TEEETNRLRQAFTETGYMKGMPEDIREDILTYGIRNSHLLTVAPTGST 654

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  V + +V E                       
Sbjct: 655 GTMVGVSTGLEPYFSFTYYRSGRLGKFIEVKADIVQEYLDH------------------- 695

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           + +  P  L    ATA  + P    +     Q+WID + S  +      + ++++ +Y +
Sbjct: 696 HPDADPHALPHWFATAMSLKPEAHADVQCVIQRWIDSSISKTVNAPKGYTVEQVEKVYER 755

Query: 892 AWLMGLKTTYYLRSRSAT------SVEKSTLKGVDGKLNA-VPVTDPNSSTHSLGIPSSC 944
            +  G K        S          E +T +       A V + D      S  +    
Sbjct: 756 LYKGGAKGGTVYVDGSRDAQVLTLKAEDNTFEEEHKTEEAKVVLVDTIQELRSTNVTIGS 815

Query: 945 TSDTECEVC 953
                C VC
Sbjct: 816 EVGNTCPVC 824



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGT- 363
            IE P   +      R A GLA  E     +++   +FYN L    F+ +   L+ +G  
Sbjct: 122 VIEKPLEIYYEQIAKRNATGLASAEKTEELRQEWFQKFYNELVHLRFVPAGRVLYGAGAG 181

Query: 364 RHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
                 +C++   V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVQDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G + +L         V QGG R+GA    L  WH D+ EF+  +    
Sbjct: 242 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLSDWHPDIVEFIISKMQNP 289


>gi|319767468|ref|YP_004132969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y412MC52]
 gi|317112334|gb|ADU94826.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Geobacillus sp. Y412MC52]
          Length = 596

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 112/486 (23%), Positives = 202/486 (41%), Gaps = 53/486 (10%)

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTAN------------WIPDLFMKRVTQNAGWTLFSP 504
            D   F +      +++ RT    T +             +   FM+ V ++  + L  P
Sbjct: 73  PDYGGFTEDIIKDAEEKLRTGGTYTVHNPDFLTGANISVCLTKEFMEAVEKDEEYALRFP 132

Query: 505 D---EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           D      +   +Y +++    +  E +     ++V+RKI A  LW+ +      +  P I
Sbjct: 133 DVETYSEEEMRIYNEKWHEVGDVREWEKMGYRVRVYRKIRARELWKLINICATYSAEPGI 192

Query: 562 TFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618
            F D  N  +  + +   V ++N C E  L       +VCNL +INL           DY
Sbjct: 193 FFIDNANEMTNARAYGQKVVATNPCGEQPLAPY----SVCNLAAINLANMVDKERKVVDY 248

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +KL  T+   VR+ DNVID   + +E+ KK     R IGLG+MG    L      Y S E
Sbjct: 249 EKLKRTVEIGVRMQDNVIDATPYFLEENKKQALGERRIGLGVMGLADLLIYCEKAYGSEE 308

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
             ++ DE    I+  A  AS+ELA+E+G++    G          ++     ++R+    
Sbjct: 309 GNQLVDELFRTIATTAYRASIELAKEKGSFPFLVG----------ETEEETRKLREAFIN 358

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
               +   +++++ +   G+RNS+ + +APT +   + GVS  ++P +   Y +S   G 
Sbjct: 359 TGYMKRMPEDIRQDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFSYYRSGRLGK 418

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F  V + +V E   +                   + E  P+ L     TA ++ P    +
Sbjct: 419 FIEVKADIVQEYLDK-------------------HPEADPNHLPPWFVTAMDLPPEAHAD 459

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
                Q+W+D + S  +   +  + +++  +Y + W  G K        S    +  TLK
Sbjct: 460 VQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLWRCGAKGGTVYVDGSR-DAQVLTLK 518

Query: 918 GVDGKL 923
             + ++
Sbjct: 519 AEENRI 524


>gi|167957457|ref|ZP_02544531.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 296

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 131/298 (43%), Positives = 192/298 (64%), Gaps = 3/298 (1%)

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           +KD  N+R+   + G +H SNLCTEITL    +  AVCNL SINL  H   N++D+ +L 
Sbjct: 1   WKDTINVRALNNNTGTIHLSNLCTEITLPQDKDNIAVCNLVSINLSRHLNGNEWDWRRLE 60

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
            ++R+A+R LDN+IDI   ++ +A  +N   RA+GLG+MGF   L  L + Y S E+ E+
Sbjct: 61  DSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFTDVLERLRLAYDSEESYEL 120

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRT 741
            D+  EFIS+HA+  S  LAQE G+Y +F+GS W +G+ PID+I +L + RD ++ ++R 
Sbjct: 121 IDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPIDTIDILEKNRDIDVKISRN 180

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801
           S L W +L+ +VK  GMRN+  MAIAPTA I +I G +  +DP +  ++ +S ++G F  
Sbjct: 181 SSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLDPRFTQIFSRSTLNGKFLE 239

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           VN  LV ELK R LW   +  +L  + G I NIE IPD++K ++ T+F+I P   IE 
Sbjct: 240 VNPNLVRELKDRSLWS-EVKDELLINQGDIQNIEAIPDEIKSVYKTSFQILPYAFIEV 296


>gi|298372704|ref|ZP_06982694.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275608|gb|EFI17159.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 881

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 147/716 (20%), Positives = 276/716 (38%), Gaps = 103/716 (14%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLL 346
           F+ + L  Q+  ++Y L  + G+  E  P+    R+A  +A  E          E + L 
Sbjct: 46  FSGDELATQVWINKYALKDSAGNLYEKSPEDMHRRMAREIARIEAKYPNPMSEDELFELF 105

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSGGL 400
             F ++              Q   LS+CF+  V    D    I    +E   L K  GG+
Sbjct: 106 DKFKYIVPQGGPMTGIGNSFQVSSLSNCFVVGVDGSSDSYGAIIKIDEEQVQLMKRRGGV 165

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ ++ +   S G++PF++  +++   V QGG R+GA+   +   H D E
Sbjct: 166 GHDLSAIRPEGSPVNNSALTSTGIVPFMERYSNSTREVAQGG-RRGALMLSISIKHPDSE 224

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           +F+D +     ++ +    N +  I D FM+ V     +T   P +  +           
Sbjct: 225 KFIDAKL----EQNKITAANISVKIDDEFMRCVESGKQYTQQYPIDSPNPTFSV------ 274

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
                             KI A  LW K++   + +  P + F D     S       + 
Sbjct: 275 ------------------KIDAKKLWNKIIHNAWASAEPGVLFWDTIIRESVPDCYADLG 316

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
              + T             C L ++NL ++  N       F+++     +R A R++D++
Sbjct: 317 YKTVSTNPCGEIPLCPYDSCRLLAVNLYSYVENPFTAMANFNFELFRKHVRYAQRIMDDI 376

Query: 636 IDINCHT------------------------IEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
           ID+                             +K K      R  G+G+      +  + 
Sbjct: 377 IDLEIEKIDRILEKISSDPESEVVKRTEYELWQKIKDKCINGRRTGVGITAEGDMVAAMG 436

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731
           + YAS EA++ A+   + ++  A  +SV +A+ERGA++ F                   E
Sbjct: 437 LRYASDEAIDFAENVQKVLAVEAYRSSVIMAKERGAFAVFDAKR---------------E 481

Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791
            ++   M    R    ++ + +K  G RN  C+ +APT T + +   +  I+P +  +Y 
Sbjct: 482 EKNPFVMR--LREADPQMYEDMKKYGRRNIACLTVAPTGTTSIMTQTTSGIEPVFLCVYT 539

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG---------NIERIPDDLK 842
           +          N  +     Q D W++  +   K+ D  +          N + + + +K
Sbjct: 540 RKRKVNP-NDKNVTIDEVDAQGDSWEKFTVFHHKFVDWMVVNGYDVTKRYNEKELAELIK 598

Query: 843 K--IH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           K   + AT+ ++D +  +    R QKW+D + S+ + L E  + + +D +YR+AW +G K
Sbjct: 599 KSPYYGATSNDVDWLNKVRLQGRIQKWVDHSISVTVNLPETATEELVDRLYREAWKVGCK 658

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT---ECE 951
                R+ S  +V    +            T   +        +         +CE
Sbjct: 659 GVTIYRAGSRGNVL-EDVSKSKKSEKESAQTPHTAKEQICFPVTDMLKRPKVLDCE 713


>gi|10140983|ref|NP_065560.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1]
 gi|81984052|sp|O36411|RIR1_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|2338024|gb|AAC58108.1| ribonucleotide-reductase, large subunit [Alcelaphine herpesvirus 1]
          Length = 780

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 153/786 (19%), Positives = 274/786 (34%), Gaps = 103/786 (13%)

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVK-ARLLHESMMDFDLVYLANDLKYERDF----AF 293
           K     H EM+    +    YIE+            +  +   L   +          A 
Sbjct: 28  KAGLLHHEEMEKKATKTVTEYIEKFADVLEENVLRFLQDNAEMLELCIYMYEQLPAYKAV 87

Query: 294 EYLGL---QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------------- 335
           +  G+   +  YD Y L   +GS  E     FMR+A    ++                  
Sbjct: 88  KSRGILSAKRFYDTYVLRTADGSCYESVSHCFMRIAAFCTVQVLTNSALKITILYLGRDK 147

Query: 336 ----------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385
                         + F++ LS     C+TP + ++G R   L+SCFL            
Sbjct: 148 LFKDLPCSPTMDLFIYFFSPLSHQLVCCATPIMRSAGLRDANLASCFLINPDLSTEKSTT 207

Query: 386 AL--QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
               QE  ML     G+G + T        I    G          + N      N    
Sbjct: 208 TALLQELTMLLSAKSGVGCNVTSFGVDEKCIQSCVG----------LINSQVEFFNDQNP 257

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501
           R  +V AY+E WH  ++EFL ++    ++  R   +     IP LF ++  ++    W L
Sbjct: 258 RPVSVAAYMEVWHSQIQEFLAVK--LPENPSRCASIYQGLCIPKLFFEKFIEDPGQNWYL 315

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P++  +L +LYG EF   YE        G       I   +L   ++  + +TG P+I
Sbjct: 316 FKPEKSGNLANLYGDEFRSEYERLV-----GIGCYADAIPIKSLMFLIINTIIKTGSPYI 370

Query: 562 TFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            +K+ CN    +   G  + S+NLC E+     + + + CNL ++ L         D   
Sbjct: 371 IYKEACNEHHWKNMEGCAIASANLCAEVIQYPGA-DVSTCNLANVCLPMCLVTVSNDSHS 429

Query: 621 -------------------------LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
                                    L + +  AV +++  I          ++     R+
Sbjct: 430 PLEKTYCGNVIESQAVSGVGFSMPILHAAVEVAVFLVNCAIAGGKCVTPGMERG-QRERS 488

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER--GAYSSFKG 713
           +G+G+ G       +   Y    A  +  E  E + F A+  S  + +      +  +  
Sbjct: 489 MGIGVHGLADVFAEMGYSYLDERAARLDVEIFENMYFRAVKTSNNICRLGGGRPFEGWGE 548

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S    G F       +                W++L +R  + G+ NS  +A+ PT   +
Sbjct: 549 SKLRHGFFHWQGWEDVNLSIPITE--------WEKLSRRCISSGVYNSQFIALMPTVGSS 600

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            + G S+S  P + N+  K +   +    N    N + + DL        +++  G +  
Sbjct: 601 LLTGFSESYYPYFANISSKVSSKEEVMKPNMTFWNRVSKEDLDT------VRFFSGDVAL 654

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYR 890
                 +   +  +AF+      +  A  R  ++DQ+QS + +L E    S + L  +  
Sbjct: 655 FPEPLKEKYSLFLSAFDYCAEKQLARARLRAPFVDQSQSHSFHLKEENVVSARFLKDLIL 714

Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS-CTSDT 948
             + +GLKT  YY + +  +++          K               +   ++   +  
Sbjct: 715 SGYTLGLKTIMYYCKVKKQSTMSSFQCLRDQNKSEMTGNDQGVEPESYIKCTAAGGETSE 774

Query: 949 ECEVCQ 954
            C  CQ
Sbjct: 775 ACLHCQ 780


>gi|284165414|ref|YP_003403693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloterrigena turkmenica DSM 5511]
 gi|284015069|gb|ADB61020.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Haloterrigena turkmenica DSM 5511]
          Length = 1042

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 132/662 (19%), Positives = 237/662 (35%), Gaps = 101/662 (15%)

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399
            EF  ++ +  FM ++PTL N+G    QLS+CF+ +  DD+  I    +E A + +  GG
Sbjct: 146 EEFQGMMENLDFMPNSPTLMNAGDELQQLSACFVDSPDDDIDDIHQTAKEAAQVFQSGGG 205

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV
Sbjct: 206 MGYAFWQLRPYGDAVGSTGGIASGPITFMRTYDQMCETIAQGGARRGAQMGVMRVSHPDV 265

Query: 460 EEFL------------------------------DLRKNTGDDRRRTH------------ 477
            +F+                              D  +   DD  +              
Sbjct: 266 IQFIHAKNKDVSLAETLRLNDPDDFTHNSFQEALDEARELIDDEGKVPKHLRNAVEGHLS 325

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
           + N +  I D FM+ +     +T  +P              +  Y+ +    D  E+   
Sbjct: 326 NFNISVGITDDFMEALQNGEEFTFTNPRTGEPHIATAET--KELYDMF-GLGDYVEVGEE 382

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
             I A  LW  ++    E G P + + +  N +             L T        EE 
Sbjct: 383 LSIPAEELWDDIVEGAHENGEPGVIYLERVNKQHSFDVEKHPDHRILATNPCGEQPLEEY 442

Query: 598 AVCNLGSINLLAHFANNQFDY----------------------------DKLASTIRTAV 629
             CNLG INL         D+                            ++    I    
Sbjct: 443 EACNLGHINLSTLADLEAPDWRVWYDEHGEEYDSLEDAVDAFLEEAIDFEEFDRRIEMGT 502

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R L+NV+ ++   +EK ++     R IGLG+MG       L + Y S  + E+A + M  
Sbjct: 503 RFLENVVTMSDFPVEKIEQKVREMRKIGLGIMGLAQLYIQLGMEYGSETSNEVARQLMRH 562

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           I+  +  AS ELA+ERG++  +  S +              E R+             E 
Sbjct: 563 INHGSKWASHELAEERGSFDEWDNSKYANPT----------EYREWFEKQTGLDADEWED 612

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVVNS 804
              ++     N N   IAPT T + +   +   +P Y   Y K+              + 
Sbjct: 613 GFSIR-----NHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDD 667

Query: 805 FLVNELKQRDLWDEAMISDLKY------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           + +  L+  D+  +A+  + +        +G +  +  +PD + ++  T  ++       
Sbjct: 668 YFLRVLEDNDIDVDAVKEEAQEQMATNQFNG-VEGLSTVPDAIGELFVTTGDLSAKEHAG 726

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
                Q+ +D A S  +   ++ + +    ++   +  G K   Y R  + +    +T  
Sbjct: 727 VQVACQQGVDSAISKTVNAPNDSTLEDAKDVFEYIYEHGGKGVTYYRDGTRSKQVLTTRA 786

Query: 918 GV 919
             
Sbjct: 787 KN 788


>gi|258591934|emb|CBE68239.1| Ribonucleoside-diphosphate reductase [NC10 bacterium 'Dutch
            sediment']
          Length = 1196

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 152/394 (38%), Gaps = 51/394 (12%)

Query: 565  DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHF---------A 612
            D          V  +H+ +       N   +       CNLGSINL   +          
Sbjct: 655  DAGTEDVYDVQVPGIHAFDANGLYAHNCGEQPLGPNDACNLGSINLARFYLPSIPADARV 714

Query: 613  NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672
              + D+  L   +RTAVR LD+VID+N + ++   +    +R IGLG+MG+   L  L +
Sbjct: 715  TERIDWVGLEQVVRTAVRFLDDVIDVNPYPLQDITEEVRNNRRIGLGVMGWADLLLELGV 774

Query: 673  PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732
            PY S EAV + +E M FI      AS +LA+ RG +  +  S++  G             
Sbjct: 775  PYDSDEAVTLGNEIMGFIRRIGHDASEKLAEARGPFPRWSRSIYKGGKP----------- 823

Query: 733  RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                                     +RNS    IAPT TI+ I G S  I+P +   +  
Sbjct: 824  -------------------------IRNSTVTTIAPTGTISIIVGCSSGIEPIFAVAFSH 858

Query: 793  SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                   T VN       K+R  + E ++  +    G++  +E +P+D++++  TA EI+
Sbjct: 859  IVGDRHLTFVNPIFEEVAKRRGFYSEELMRRVAER-GTVRGLEGVPEDVQRVFVTAHEIE 917

Query: 853  PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TS 910
            P   ++  +  QK  D   S  + L    + + +   Y  A+ +G       R     T 
Sbjct: 918  PARHVKMQAAFQKQTDNGVSKTINLPNSATPEDIAKAYMMAYELGCLGITVFRDGCKGTQ 977

Query: 911  VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            V            N        +   ++G     
Sbjct: 978  VLHLGTGAKPALSNVEEPAPSLAEEPAVGDAEVS 1011



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 135/309 (43%), Gaps = 42/309 (13%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVE 341
           ++  +    +++L +RY +       E P+    RVA+ +A  E +         + A  
Sbjct: 29  KNGQWSESAIRVLKERYLIRDATGVKETPEEMCWRVAVAIAKAEGQWGRSEAEALQVAES 88

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           FY+++    F+ ++PT+ N+G  +  Q S+CF+  V D + GIF A++  A++ +  GG 
Sbjct: 89  FYDVMVDGKFLPNSPTMMNAGKENGMQYSACFVLPVEDSMEGIFEAVKRAAIIHQSGGGT 148

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R     +  T GK+ G I FL+V N    AV QGG R+GA    L+  H D+ 
Sbjct: 149 GFAFSRLRPKDTLVKSTGGKASGPISFLRVFNAATEAVKQGGARRGANMGILKVDHPDIL 208

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
           EF+D +    D      +++ A    D FM  + ++  + L  P                
Sbjct: 209 EFIDCK---LDGGITNFNISVAT--TDTFMDALAKDETYELIDPHT-------------- 249

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGV 578
                          V R + A  ++++M+   + TG P + F D  N           +
Sbjct: 250 -------------KLVTRHLPAREVFQRMVQAAWRTGDPGMIFIDRINASPSNPIPQDEL 296

Query: 579 VHSSNLCTE 587
           + ++N C  
Sbjct: 297 IEATNPCVP 305


>gi|239996351|ref|ZP_04716875.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 367

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 154/376 (40%), Gaps = 16/376 (4%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             L +   +G   S + +++  +V  A  GL++VS   V  +     YDG++ S++   L
Sbjct: 3   NNLLVTKRNGEKESIDLEKIHKVVTWAAKGLKNVSVSQVEIKAQIQFYDGINTSEIHETL 62

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
           I S+  LI  + P+Y  + AR  +  LR++                      E+  + ++
Sbjct: 63  IKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPALL-----------EHVGKMVD 111

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319
            G   + L E     +   + + + + RD  F Y  ++ L  +Y     + G   E  Q 
Sbjct: 112 MGKYDKHLLEDYTPEEFAEMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171

Query: 320 FFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377
            ++ VA  L     +  +      FY+  S+F     TP +    T   Q SSC L    
Sbjct: 172 LYILVAACLFANYDKATRMDYIRRFYDAASTFKLSLPTPIMAGVRTPTRQFSSCVLIETG 231

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D L  I               G+G +   +R LG+ I G      G IPF K       +
Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497
            +QGG R GA   +   WH++VE  L L+ N G +  R   ++       L  +R+ ++ 
Sbjct: 292 CSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKDG 351

Query: 498 GWTLFSPDEVSDLHDL 513
             +LFSP +V  L+D 
Sbjct: 352 YISLFSPSDVPGLYDA 367


>gi|158335535|ref|YP_001516707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acaryochloris marina MBIC11017]
 gi|158305776|gb|ABW27393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Acaryochloris marina MBIC11017]
          Length = 649

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 147/631 (23%), Positives = 245/631 (38%), Gaps = 66/631 (10%)

Query: 316 MPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             +    RVA  +A  E+  E       +F ++L    F+     L N       L +CF
Sbjct: 29  SWEDVVHRVATYVASAESTPEQQSYWQEKFLSILQPMKFVPGGSILANCDHGTRGLLNCF 88

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN-----GKSQGVIPF 427
           + +  D ++ I   + ++ +  K+ GG+G +     G   +I         GK+ G    
Sbjct: 89  VLSAEDHIHDITKLVSDSVLTTKFRGGVGINIGA-EGSKGYIRQKGAPFQDGKALGPCAV 147

Query: 428 LKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
           L + ++ +  +  G K R+GA    +   H D+ EF+  +  +  D       N A  + 
Sbjct: 148 LDMVSENSKKITTGNKARRGAFLFSMNWKHPDIWEFIQAKTQSTID------ANFAKSVM 201

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI------ 540
           +   +   Q+          +  LH   G  +   + N E + DR        +      
Sbjct: 202 EELAQLAQQDEPSQGKQEK-LKALHTEVGTAWVETHLNPEGKRDRRWHNANISVQLDDEF 260

Query: 541 ---------SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
                     A  LW+ M      T  P +   D    RSP +    V  +N C EI L 
Sbjct: 261 FAKLDQGDEEANKLWQAMAENAHATADPGLLLIDNAKRRSPIRD--FVTCTNPCGEIFLP 318

Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            +    + CNLGS+ L          N + D+D LA T+R A+R LDNV+D++       
Sbjct: 319 PN----SACNLGSLVLTKFVRRTAEGNIEIDWDDLAETVRIAIRFLDNVLDVSEFATPDQ 374

Query: 647 KKSNHT-HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           K +     R +GLG+MG+   L L  IPY S   +E  D    +I+ HA   S  +A E+
Sbjct: 375 KHNVRDVFRQLGLGIMGWADYLKLARIPYDSARHLEEIDRWGSWIAAHAYRTSEAIAAEK 434

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA   +      Q   P +    +    +             +L +  +     NS  ++
Sbjct: 435 GACGVWDQIKDIQTGNPFERW--MDSEGNYYNGTEAHHNDRQDLTQVPRR----NSTVLS 488

Query: 766 IAPTATIANICGVSQSIDPSYQN-----LYVKSNMSGD--FTVVNSFLVNELKQRDLWDE 818
           IAPT +IA +   S + +P +       ++V ++ S      ++N +L        L   
Sbjct: 489 IAPTGSIAQLAACSWAFEPDFGLTLWKQVFVDASRSQQNWVQILNPYLDE------LNLP 542

Query: 819 AMISDLKYHDGSIGNIERIPDD--LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
              +++    GS+ +         + +    A EI P W I   S+ Q WID + S  + 
Sbjct: 543 EADAEIVKQTGSLADTNYGKQHPEIARSFKIAREIPPGWHILVQSKWQSWIDSSISKTIN 602

Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           L    +  ++  IYR A   GLK     RS 
Sbjct: 603 LPAHATVDEIKQIYRLAEKAGLKGVTIYRSG 633


>gi|66391912|ref|YP_238837.1| nrdA [Aeromonas phage 31]
 gi|62114749|gb|AAX63597.1| nrdA [Aeromonas phage 31]
          Length = 570

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 161/632 (25%), Positives = 247/632 (39%), Gaps = 125/632 (19%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           +   G  +    Y         E  +  F RVA  LA  +   E     +++LL S    
Sbjct: 27  YTTQGWSMFKKNYQYKG-----ETVRGAFRRVASTLAKHDIRPE-AEERYFDLLWSGKLA 80

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            +TP   N+G       SC  + V D +   +    E AMLAK   G  +    +R  G+
Sbjct: 81  MATPVFCNTGPDRGMPVSCAGSYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGS 140

Query: 413 HIHGTNGKSQGVIP-FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
            I  ++ K+ G++P F    N        G  R+G    Y++  H D             
Sbjct: 141 DISTSHNKADGLVPVFDNFVNTKTKVAAAG--RRGEWAGYVDFSHGDF------------ 186

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
                                      W L      +      G  FE   E+YE+   R
Sbjct: 187 ---------------------------WELQGYVLKNPASAHVGWVFEK--EDYEKLKAR 217

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEI 588
               + R       W +++ M   TG  ++      N  +PQ        + SS LCTEI
Sbjct: 218 DPEYMAR-------WNELMYMRARTGKGYMWKNWIANELAPQAIKNSGIPIRSSQLCTEI 270

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI--------DINC 640
            L S    T  C L S+N+         D       I+ +VR LD+V         +++ 
Sbjct: 271 ALPSDDMHTFTCILSSLNVSLWDEITADD-------IKWSVRFLDSVCSEFLAKAKELSY 323

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
            T+ KA +     RA+GLG +GF + L +  I + S  A  + ++    I   A   S E
Sbjct: 324 DTLHKAIRFTEKARALGLGTLGFHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRE 383

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
           LA+E G     KG+                                          GMRN
Sbjct: 384 LAEEYGEPEWCKGT------------------------------------------GMRN 401

Query: 761 SNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE- 818
           +  + IAP  + A + G VSQ ++P   N +++ + +GDF   N  L   LK R    E 
Sbjct: 402 ATLITIAPNMSSALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDKEI 461

Query: 819 -AMISDLK-YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
             ++ D+  YH+GS+ +++ + D  K +  TA+EID   +I  AS RQ+ IDQAQS+NL+
Sbjct: 462 QELMEDIATYHNGSVQHLDILTDHEKSVFKTAYEIDQHAIIRLASARQRHIDQAQSINLF 521

Query: 877 L-DEPSGKKLDFIYRQAW--LMGLKTTYYLRS 905
              +     +  ++R A+     LK+ YYLRS
Sbjct: 522 FSADEKESVIASVHR-AFMDDPRLKSLYYLRS 552


>gi|53715111|ref|YP_101103.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           fragilis YCH46]
 gi|52217976|dbj|BAD50569.1| ribonucleoside-diphosphate reductase alpha chain [Bacteroides
           fragilis YCH46]
          Length = 798

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 128/681 (18%), Positives = 243/681 (35%), Gaps = 111/681 (16%)

Query: 320 FFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLT 374
              R+A  +A  E +      + + + L   F ++    +         Q   LS+CF+ 
Sbjct: 1   MHWRLANEVARIEAKYPNALSSEQLFELFDHFKYIVPQGSPMTGIGNDYQVASLSNCFVI 60

Query: 375 TVP---DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +    D    I    +E   L K  GG+G+D + +R  G+ +  +   S G++PF++  
Sbjct: 61  GIDGSADSYGAIIKIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERY 120

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
           +++         R+GA+   +   H D E F+D +   G    +    N +  + D FM 
Sbjct: 121 SNSTR-EVAQDGRRGALMLSVSIKHPDSEAFIDAKMTEG----KVTGANVSVKLDDAFMS 175

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              +   +T   P +                               ++I A  LW+K++ 
Sbjct: 176 AAVEGRKYTQQYPIDSDHPTT------------------------VKEIEASNLWKKIVH 211

Query: 552 MLFETGHPWITFKDPCNI----RSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSIN 606
             +++  P + F D                   S+N C EI L           NL S  
Sbjct: 212 NAWKSAEPGVLFWDTIIRESVPDCYADLGYKTVSTNPCGEIPLCPYDSCRLLAINLYSYV 271

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT------------------------ 642
           +     +  FD+D     +  A R++D++ID+                            
Sbjct: 272 VNPFTKDAYFDFDLFHKHVALAQRIMDDIIDLELEKIERIIEKIDQDPENEEVKHTERGL 331

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            EK  K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +SV++A
Sbjct: 332 WEKIYKKSGQGRRTGVGITAEGDMLAALGMRYGTEEATEFSEKVHKAVALGAYRSSVDMA 391

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +ERGA+  +                     ++   +NR  R     L + +K  G RN  
Sbjct: 392 KERGAFDVYD----------------SEREKNNPFINR-LREADPALYEDMKKYGRRNIA 434

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDFTVVN 803
           C+ IAPT T + +   +  I+P +  +Y +                        ++ V +
Sbjct: 435 CLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVRVDFVDETGDAFEEYIVFH 494

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
              V  ++          +           I+ +        AT+ ++D +  +    + 
Sbjct: 495 HKFVTWMEANGYDPAKRYTQ--------EEIDELVAKSPYYKATSNDVDWLMKVRMQGKI 546

Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QKW+D + S+ + L ++   + ++ +Y +AW  G K     R  S + V  S     D K
Sbjct: 547 QKWVDHSISVTINLPNDVDEELVNRLYVEAWKSGCKGCTVYRDGSRSGVLISAKSDKDKK 606

Query: 923 LNAVPVTDPNSSTHSLGIPSS 943
               P   P        +  +
Sbjct: 607 EELPPCKPPTVVEVRPTVLEA 627


>gi|47458851|ref|YP_015713.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma
           mobile 163K]
 gi|47458179|gb|AAT27502.1| ribonucleotide reductase [Mycoplasma mobile 163K]
          Length = 842

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 139/705 (19%), Positives = 246/705 (34%), Gaps = 123/705 (17%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS- 361
             Y         E       RV   ++  E++K   A+     L+  + + +   L+ + 
Sbjct: 118 KSYISKPLEIYYE---QIAKRVGFAISKDESKKHIEAI--TKELADKNIIPAGRILYGAG 172

Query: 362 GTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
             +     +C++  +  D   GI     +   +    GG+G + + +R   A      GK
Sbjct: 173 SKKEVTFFNCYVMPMIQDSREGISKHRGQIMEIMSRGGGVGTNGSSLRPKDAIAISVGGK 232

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH-------------IDVEEFL---- 463
           S G + +L   +     V QGG R+GA    L  WH              ++ +F+    
Sbjct: 233 SSGAVSWLNDISQLTNLVQQGGSRRGAQMIMLGVWHPDIVEFIISKMQKPNILKFIKDKF 292

Query: 464 -------------------DLRKNTGDDRRRTHDMNTANWI------------------- 485
                                ++   D      ++     +                   
Sbjct: 293 HHPLIKEAVNFKLNFRPLSQEKQMNIDAILAHKNLMPHGVVVNAENLKKAGGEYEINDPG 352

Query: 486 -----------PDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIAYENYERQADR 531
                         FM  V  N  + L  PD      +    Y KE+    +  E     
Sbjct: 353 FLSGANISVALTSDFMDAVKNNEMYELRFPDLEKFTKEQKAFYDKEWHNIGDVKEWGKLG 412

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVGVVHSSNLCTEITL 590
             +KV+  I A  LW  +      +  P + F D  N   + Q +   V  +N C E  L
Sbjct: 413 YPVKVYSTIKAKELWDLINLCSTYSAEPGVFFIDRANELTNAQSYGQKVVCTNPCGEQPL 472

Query: 591 NSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
                  +VCNL +INL      +  + DY KL +T++  +R  DN+ID   + +++ K 
Sbjct: 473 APY----SVCNLAAINLANFVDKHTGKIDYPKLENTVKLGIRFQDNIIDKTYYFLKENKD 528

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
                R +GLG+MG    L    + Y S EA ++ D+  E I+  A   S+EL +E+G++
Sbjct: 529 QALGERRVGLGVMGLHDMLIWSGLKYGSKEANKVVDKVFETIATSAYLTSIELGKEKGSF 588

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIA 767
             F                      +    +   +     +    K    +RNS+ + IA
Sbjct: 589 PFFT-------------------SVERFLQSGYVKKLPQIVIDAFKKTKAIRNSHLLTIA 629

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           PT +   + GVS  ++P Y   Y +S   G F  V+  +V E K+   W           
Sbjct: 630 PTGSTGTMAGVSTGLEPYYAFKYFRSGRLGKFIEVDQDIVAEWKKIKNWPAD-------- 681

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
                        L +I ++A ++ P   ++  +  Q+WID + S  +      S + ++
Sbjct: 682 -----------KALPEIFSSAMDLKPEEHVKVQNLIQRWIDSSISKTVNAPKGYSVEDVE 730

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
            ++   +  G K        S  +   S    ++        T P
Sbjct: 731 KVFMSLYDGGSKGGTVYVDGSRDAQVLSLSNELNDLNEGDDPTRP 775


>gi|325571485|ref|ZP_08146985.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
 gi|325155961|gb|EGC68157.1| ribonucleotide reductase alpha subunit [Enterococcus casseliflavus
           ATCC 12755]
          Length = 825

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 198/545 (36%), Gaps = 48/545 (8%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV-----EEFLDLRKNTGDD 472
           N   + +I      +       +       +    +  H D+     E+       T  +
Sbjct: 292 NAAIKQLINEKLQFDPLTKMEERMFTYLAQLPESSDKEHNDMIQKAKEKLRIGGSYTVKE 351

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQA 529
                  N +  +   FM+ V  +  + L  P   +        Y  ++    +  E  A
Sbjct: 352 SDFLTGANISVCLTGEFMEAVKTDGWYELRFPDIDNYSEAEMAQYDAKWAEVGDVREWAA 411

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEI 588
              ++K +++I A  LW  +      +  P I F D  N  +    +   V ++N C E 
Sbjct: 412 AGHKVKTYQRIKARELWELITFCATYSAEPGIFFIDNANKMTNATAYGQKVVATNPCGEQ 471

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            L       AVCNL +INL       +   D+ KL  T++TAVR  DNVID   +  +K 
Sbjct: 472 PLTPY----AVCNLAAINLANMADRQKGTVDFAKLKETVKTAVRFQDNVIDATPYFFDKN 527

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
           ++     R +GLG+MG    L      Y S E  +  D+  E ++  A  AS+ELA+E+G
Sbjct: 528 EQQAKGERRVGLGIMGLADLLIYCGKKYGSAEGNQFVDQIFEAMAVTAYEASIELAKEKG 587

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
           ++    G           +      +R +       +     + + V   G+RNS+ + +
Sbjct: 588 SFPFLIG----------KNDQETQALRKKFVDTGYMKKMPAHIHEGVLRFGIRNSHLLTV 637

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APT +   + GVS  ++P Y   Y +S   G F  +N+ +V         DE ++     
Sbjct: 638 APTGSTGTMTGVSTGLEPYYSFSYFRSGRLGKFIEINAEIV---------DEYLMD---- 684

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885
                 + ER    L     +A E+ P   +      Q+W+D + S  +         ++
Sbjct: 685 ------HPERTKAQLPAWFISAMELTPEEHVGVQCTIQRWVDSSISKTVNAPKGYKVSQV 738

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             +YR  +  G K        S  S   +     +     V           +     C 
Sbjct: 739 AKVYRDLYEGGAKGGTVYVDGSRDSQVLTLEAVENELTAQVEPLPVVQVDEPVVSGEIC- 797

Query: 946 SDTEC 950
               C
Sbjct: 798 --PIC 800


>gi|28210310|ref|NP_781254.1| vitamin B12-dependent ribonucleotide reductase [Clostridium tetani
           E88]
 gi|28202746|gb|AAO35191.1| ribonucleoside-diphosphate reductase (vitamin B12-dependent)
           [Clostridium tetani E88]
          Length = 1047

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 119/648 (18%), Positives = 209/648 (32%), Gaps = 72/648 (11%)

Query: 363 TRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
               Q S+CF+ ++ D     + I         L K   G G +++ +R  G  + G  G
Sbjct: 180 YSRTQASACFILSIEDKLLGSHSISDQYVNETKLFKGGSGTGTNFSTIRAKGEKLSG-GG 238

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++ FLK  +  A A+  G   R+ A    L+  H ++ +F+  +    D  R    
Sbjct: 239 VSSGLMSFLKGLDRNAGAIKSGGTTRRAAKMVCLDIDHPEILDFITWKAREEDKVRALGK 298

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           M     I     + V+           +                 +      R +  V +
Sbjct: 299 MGYDMDIDGEAYETVSGQNSNNSIRFSDFFMEKVKNLDSMPD---DTIELEGRVDSSVNQ 355

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---------VHSSNLCTEIT 589
           K+    LW       +    P   F D  N                   ++S+N C E  
Sbjct: 356 KVKVKDLWDSFAKSTWMCADPAPQFSDTFNAWHTCPAGEDGNVNAKHNKINSTNPCGEYA 415

Query: 590 LNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 + + CNL SIN+   +       D +     +      L+  I       +   
Sbjct: 416 F----LDNSSCNLASINIYKFYDGKEKNIDLESYLHVVGLVQLALEASIYWGQFPTKDIA 471

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +  +  RA GLG+    S L +L  PY S EA  I+   +  ++ ++   S  +A+E G 
Sbjct: 472 QKTYMFRATGLGITNLASLLMVLGYPYNSTEARNISSALVGLLTGYSYYISSLMAKEIGT 531

Query: 708 YSSFKGSLWDQ---------------------GVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           +  F  +                            P+     L E      ++   +  W
Sbjct: 532 FEKFSINKPHMLKVIRNHAKVAGSINGLYEDLNYNPVKVDHNLLENIGFSDLSNLLKKSW 591

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNS 804
            +     +  G RN+    IAPT TI+      + SI+P + ++ Y K +  G  TV N 
Sbjct: 592 LKALNSGEEHGYRNAQVSVIAPTGTISFAMDCGATSIEPFFSHVVYKKLSGGGMMTVTNP 651

Query: 805 FLVNELKQRDLWDEAMISDLKYH------------------DGSIGNIERIPDDLKKIHA 846
            +   LK      E +   L+Y                   DG I     +  +   I  
Sbjct: 652 VIELSLKNLGYSKEQIKDILQYVLEKEVVQTKEGFKYEKVLDGKIEGAPHLKKEHYAIFD 711

Query: 847 TAF-------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           TA         I+PM  ++  +     I  A S  + L +  + +    +   +W +G+K
Sbjct: 712 TANKCGSGKRYIEPMGHVKMVAALTPLISGAISKTVNLPNNATIEDFKKVILNSWELGVK 771

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
                R     S   +     +       +   +    S  +      
Sbjct: 772 GIALYRDGCKASQPLNVSLSSEKDFELEDLDYKSLLEKSKELQRKLQE 819


>gi|308044273|ref|NP_001183684.1| hypothetical protein LOC100502278 [Zea mays]
 gi|238013844|gb|ACR37957.1| unknown [Zea mays]
          Length = 195

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 6/193 (3%)

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PTA+ + I G ++  +P   N+Y +  +SG+F VVN  L+++L +  +W   + + + Y
Sbjct: 1   MPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIY 60

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
            DGS+  I  IPDDLK I+ T +EI    L++ A  R  +IDQ+QSLN+++++ +  KL 
Sbjct: 61  DDGSVQKIAEIPDDLKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLT 120

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAV-----PVTDPNSSTHSLGI 940
            ++  AW  GLKT  YYLR+R+A    K T+     K N         T+ +       +
Sbjct: 121 SLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTTLLKENGNGMNDGKPTEEDVEAKMAQM 180

Query: 941 PSSCTSDTECEVC 953
             S  +  EC  C
Sbjct: 181 VCSFNNREECLAC 193


>gi|268323545|emb|CBH37133.1| putative intein containing ribonucleotide reductase, large subunit
           [uncultured archaeon]
          Length = 919

 Score =  240 bits (613), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 39/317 (12%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSIN+     N + D+++L   + ++VR LD+VID N + + K +K    +R I
Sbjct: 613 YDSCNLGSINVSKFVENGEIDWERLKEAVWSSVRFLDDVIDENRYPLSKIEKMTKANRKI 672

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG    L  L I Y S +AV +A++ M+FI+  A   S EL  E+G++ +F+ S+W
Sbjct: 673 GLGIMGLAELLIKLKIAYDSKDAVLMAEKLMQFITNEARQCSTELGLEKGSFPNFELSVW 732

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                                                    MRN+    IAPT TI  I 
Sbjct: 733 STYDA------------------------------------MRNATVTTIAPTGTIGIIG 756

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
             S  I+P +   +V++ M G    +N       K++  + + +I+++    GSI +I  
Sbjct: 757 NCSSGIEPLFAVAFVRNVMGG-MLEINKLFEEIAKEKGFYSKELIAEIAKR-GSIQDIAG 814

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
           IP+D+K++  TA +I P W +   +  Q++ D A S  + L  + +   +  ++  A+ +
Sbjct: 815 IPEDIKRVFVTALDISPEWHVRMQAAFQRYTDNAVSKTVNLPSDATRGDVKRVFLLAYKL 874

Query: 896 GLKTTYYLRSRSATSVE 912
             K     R      + 
Sbjct: 875 KCKGVTVYRYGCKEGIL 891



 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/328 (26%), Positives = 143/328 (43%), Gaps = 40/328 (12%)

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVA 325
             +       D+  L   L  + D        ++L  RY L       IE P   F RVA
Sbjct: 4   PYISYHQQRADIQGLKKLLSDKSDLNLSANAAEVLKRRYLLKDELERVIETPSQMFARVA 63

Query: 326 MGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
             +A  E          +K    FY L+ S  F+ ++PTL N+GT   QL++CF+  V D
Sbjct: 64  KAIARAEQNYGKSKAEVKKIEQRFYLLMHSLEFLPNSPTLMNAGTDLGQLAACFVIPVED 123

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
            + GIFGA+++ A + +  GG G  ++ +R  G  +  T G + G + F++V +     +
Sbjct: 124 SIEGIFGAVKDMARIHQSGGGTGFSFSRLRPKGDVVKSTGGVASGPVSFMRVFDVATDVI 183

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
            QGGKR+GA    +   H D+ EF+  +     +R    + NT+  + D FM  V +N  
Sbjct: 184 KQGGKRRGANMGIICADHPDILEFIRAK-----ERGEFANFNTSVAVTDEFMHAVDRNEE 238

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           + L +P    +                            RKI A  ++ +++T  ++ G 
Sbjct: 239 YELINPRTKEE---------------------------VRKIKAGEVFNEIVTYAWKIGD 271

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           P I F D  N  +P   VG + ++N C 
Sbjct: 272 PGIIFLDEINRHNPVSAVGRIEATNPCV 299


>gi|310827646|ref|YP_003960003.1| hypothetical protein ELI_2057 [Eubacterium limosum KIST612]
 gi|308739380|gb|ADO37040.1| hypothetical protein ELI_2057 [Eubacterium limosum KIST612]
          Length = 979

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 125/612 (20%), Positives = 224/612 (36%), Gaps = 61/612 (9%)

Query: 362 GTRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
                Q S+CF+ ++ D L   + I         L K   G+G +++ +RG+   +    
Sbjct: 169 RYTRTQSSACFILSIEDKLLGHHSISEHYVSETKLFKGGSGVGTNFSSLRGVNEKLSS-G 227

Query: 419 GKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           G+S G++ FL+  +  A A+  G   R+ A    ++  H ++EEF+D +    D  R   
Sbjct: 228 GQSSGMMSFLQGLDRNAGAIKSGGTTRRAAKMVIVDVDHPEIEEFVDWKVKEEDKVRALG 287

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-- 535
            M       D+ M            S + V    +       + +E   +   +G +   
Sbjct: 288 KMGY-----DISMDGEAYRTVAGQNSNNSVRLNKEFMDAVINLEHEPDHKMTLKGRVDFA 342

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLCT 586
           V R++S   LW+K+ T  +    P + F D  N                   ++++N C+
Sbjct: 343 VNREVSVKELWQKINTASWACADPGLQFDDLFNAWHTCPGGEDGDTSKKENRINATNPCS 402

Query: 587 EITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
           E    +       CNL SIN+   F    N+ D ++ +        VL+  I       E
Sbjct: 403 EYAFLND----TACNLASINIFRFFDPETNKIDIERFSHLAGLIQLVLEASIYWGQFPTE 458

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
              + ++  R  GLGL    S +  L  PY S EA  +       ++ H+   S  +A +
Sbjct: 459 DVARKSYLFRTTGLGLANAASLILALGYPYDSDEARNLIAALCGIMTGHSYYVSAMMAGK 518

Query: 705 RGAYSSFK-GSLWDQGV--------------------FPIDSIGLLAEVRDELAMNRTSR 743
            G +  ++  S + + V                     P+     L E    L ++   +
Sbjct: 519 VGPFVKYEINSPYMKRVIRNHSRVAGYLADDYEEMTYEPLKINHELLEEMGFLNISSRIK 578

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTV 801
             W +     +  G RN+    IAPT TI+      + S++P Y ++ + K    G   +
Sbjct: 579 DAWKDAIDYGEANGYRNAQVSVIAPTGTISFAMDCGATSVEPFYNHVVFKKLVGGGSMEI 638

Query: 802 VNSFLVNELKQRDLWDEAMISDLKY----------HDGSIGNIERIPDDLKKIHATAFEI 851
           VN  +   L+      + +   L Y             S+     I  +   +  TA  I
Sbjct: 639 VNPVMEIALRNLGYKPKEISDILGYMLDKDEKGYLRHDSLSGAPHIKPEHIPVFDTANTI 698

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
            P   +   S     I  + S  + L  +   + +  I+  A+  G K     R     S
Sbjct: 699 RPEGHVLMVSAITPMISGSVSKTVNLPSDAEIEDVKKIHLLAYTTGAKAIAVYRDGCKAS 758

Query: 911 VEKSTLKGVDGK 922
              S+ K  +G+
Sbjct: 759 QPLSSGKQEEGE 770


>gi|145591871|ref|YP_001153873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Pyrobaculum arsenaticum DSM 13514]
 gi|145283639|gb|ABP51221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Pyrobaculum arsenaticum DSM 13514]
          Length = 1240

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 112/507 (22%), Positives = 192/507 (37%), Gaps = 59/507 (11%)

Query: 490  MKRVTQNAGWTLFSPDEVSDL---HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             K VT++    ++   EV       +     F        R++ +  +K  ++    A  
Sbjct: 741  FKYVTKSGEERVYKSSEVYYELVIKNESRCRFMEKIGLSPRKSAKISLKKCKREKPFATV 800

Query: 547  RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
              +  +  E         D       +     + S N C E   N       VCNL  IN
Sbjct: 801  ASVEYIGKE------VVYDFGVPDYHRYIAEGIVSHN-CAETVQNPF----EVCNLTHIN 849

Query: 607  LLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
            L+    +N             D+D LA   R   R LD+ ID +   IE   + N   R 
Sbjct: 850  LVKFVKDNCGGGSFEEKLGCIDWDGLAQAARVGTRFLDDAIDRSKTGIEVIDEMNAATRK 909

Query: 656  IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
             GLG+MGF   L  L +PYAS EAVE+ +  M +I  +A+  S ELA+E+G +  F  S+
Sbjct: 910  NGLGIMGFAELLIKLGVPYASWEAVELINRIMGWIYVNALDESAELAREKGPFKFFHKSI 969

Query: 716  WDQGVFP---IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI---------------- 756
            + +G  P             R +    R  +   D+L+                      
Sbjct: 970  YARGEIPVLKFQDHVWSRWERIKRVYPRELQEAGDKLRDITMRTRQWLGPYLDKLSEKVR 1029

Query: 757  -GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
             G+RNS  ++IAPT   + + G +  ++P +   ++++   G         +  LK R L
Sbjct: 1030 GGVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLVEYYEPGIELLKSRGL 1089

Query: 816  WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875
            W   +   +    G + +   +P+D+K + ATA EI  +W +   +  Q+W+DQ  S  +
Sbjct: 1090 WTPQVR-KVVEETGMLRDAP-VPEDVKHLLATAMEIGWLWHVLMQASAQQWVDQGISKTI 1147

Query: 876  YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTLKGVDGKLNA 925
             +      + + + +  AW +G+K     R +S +            K  L      +  
Sbjct: 1148 NMPANAPEEDVYWAFAFAWAVGVKGITVYRDKSKSVQVIYTGLKQEIKKKLADTKIVVKP 1207

Query: 926  VPVTDPNSSTHSLGIPSSCTS--DTEC 950
            + +        +     +     D  C
Sbjct: 1208 LALGASIDEAANEAKLKALEEGKDPYC 1234



 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 186/437 (42%), Gaps = 37/437 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + +   DG +  F+ ++L++ + +A + +   ++  V  E  K +   +   +L   +  
Sbjct: 1   MSVNKLDGRVEPFSMEKLKISIAKAGADVGVDTNVDVSLEVKKEV---VWSWELADMVQL 57

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
                    P  A V    LL ++ +E     + K +              F   ++ G+
Sbjct: 58  ELLKRAIDRPELALVAQSHLLGRVYKEAFGKDFLKTKVGYGERAAAR----FKSLVDAGL 113

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFM 322
             R   E +  F+        + E D +  Y  L++  +  Y L     R+ E P     
Sbjct: 114 LKREALEFLSKFE-------PRPEFDRSLSYNALRLFTNGNYALRDQNFRLAETPSMAAW 166

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382
           RVA  +A +     +RA  +Y+ ++    + ++P  FN+ T+    +SCF   V D L  
Sbjct: 167 RVATAVARE----LERARLYYDYITKLKIVPASPFWFNAWTKKEMFASCFTLEVEDCLSS 222

Query: 383 I--------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           I        + AL  + ++ +  GG+G D++ +R  G  + G+ G + G I F+++ +  
Sbjct: 223 ITHPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPISFMRLFDTN 282

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR-- 492
              + QGGKR+GA    L  WH D+ +F+  +     D     + N + +  D FM++  
Sbjct: 283 VDVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDA-HLQNFNISVFADDTFMEKAL 341

Query: 493 -VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            + QN  + L +P    +       E+       ER+    E  V+ +I+A  L++++  
Sbjct: 342 GIDQNPKYKLINPRAFVEKTGTKPVEYVD-----EREVAIPEEAVWGEINAKELFKEIAH 396

Query: 552 MLFETGHPWITFKDPCN 568
             +++G P + FK   N
Sbjct: 397 GAWDSGDPGMIFKSNLN 413


>gi|300710136|ref|YP_003735950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halalkalicoccus jeotgali B3]
 gi|299123819|gb|ADJ14158.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Halalkalicoccus jeotgali B3]
          Length = 1031

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 137/670 (20%), Positives = 241/670 (35%), Gaps = 103/670 (15%)

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392
              E +A EF  L+    F+ ++PTL N+G    QLS+CF+ +  DD+  I    +E A 
Sbjct: 139 EHVEAKADEFQALMERLSFIPNSPTLMNAGDELQQLSACFVDSPGDDISDIHQTAKEAAE 198

Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452
           + +  GG+G  +  +R  G  +  T G + G I F++  +     + QGG R+GA    +
Sbjct: 199 VFQSGGGMGYAFWRLRPYGDSVGSTGGIASGPITFMRTFDQMCETIAQGGTRRGAQMGVM 258

Query: 453 ETWHIDVEEFL------------------------------DLRKNTGDDRRRTH----- 477
              H DV EF+                              +  +   D+  R       
Sbjct: 259 RVSHPDVIEFIHAKNKDVSLAHTLRLNDPDDYTYTSFSEALEEARGLIDEDGRVPKHLRN 318

Query: 478 -------DMNTANWIPDLFMKRVTQNAGWTLFSPD-EVSDLHDLYGKEFEIAYENYERQA 529
                  + N +  + D FM+ +  +  +   +P  E   +     KE    Y       
Sbjct: 319 AVEGHLSNFNISVGVTDGFMEALYNDEEFVFENPRTEEPHIATAETKEMYSRY----GLG 374

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              E+     I A ALW +++   +E G P + + +  N               L T   
Sbjct: 375 HHVEVGEELAIPAEALWDRIVDGAYENGEPGVIYLERVNKEHSFDVEAHPDHRILATNPC 434

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDY----------------------------DKL 621
                EE   CNLG INL    A +  D+                             + 
Sbjct: 435 GEQPLEEYEACNLGHINLSTLAATDAPDWRIWHTEHGAEYDSLEAAMADYLEEAIDTAEF 494

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
              I    R L+NV+ ++   + + ++     R IGLG+MG       L + Y S E  E
Sbjct: 495 DRRIELGTRFLENVVTMSDFPVPEIEQKVREMRKIGLGIMGLAQLYIQLGVRYGSEEGNE 554

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A + M  I+  +  AS ELA ERG++  +  S +       +              +  
Sbjct: 555 MASQLMTHINHGSKRASHELAGERGSFEDWSDSKYANPTEYAEW----------FEHHTG 604

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GD 798
                       +   +RN N   IAPT T + +   +   +P Y   Y K+      G+
Sbjct: 605 ESADDWA-----EGYPIRNHNTTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVSDDVQGE 659

Query: 799 FTVV--NSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIHATAFE 850
             +V  + + +  L+  D+  EA+ ++ +        DG +  +  +P+ + ++     +
Sbjct: 660 EMLVEFDDYFLRTLEANDVDVEAVKAEAQEQMSENEFDG-VEGLSTVPNAIGELFVVTSD 718

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +            Q  +D A S         S + ++ +YR  +  G K     R  + +
Sbjct: 719 LAGKDHAAVQCACQTGVDSAISKTCNFPNAASKEDMEEVYRYIYDNGGKGVTVYRDGTRS 778

Query: 910 SVEKSTLKGV 919
               +T    
Sbjct: 779 KQVLTTRADN 788


>gi|317128403|ref|YP_004094685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473351|gb|ADU29954.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cellulosilyticus DSM 2522]
          Length = 855

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 108/496 (21%), Positives = 195/496 (39%), Gaps = 54/496 (10%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  I   FM+ V  +  + L  P   +      + Y +E+    +  E +A    ++
Sbjct: 368 ANISVCITKEFMEAVDNDEDYALRFPDVENYNEKEMEAYNREWHEYGDVREWEALGFGVR 427

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
            +R I A  LW  +      +  P I F D  N  +  + +   V ++N C E  L    
Sbjct: 428 TYRNIKAKELWNLINICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAPY- 486

Query: 595 EETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL ++NL      +    D+ KL  T+ T VR+ DNVID   + +E   K    
Sbjct: 487 ---SVCNLAAVNLAEMADKDNKVVDFKKLEQTVATGVRMQDNVIDATPYFLEDNTKQAKG 543

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S E   + D+  E I+  A   S+ELA+E+G++    
Sbjct: 544 ERRVGLGVMGLHDLLIYTETVYGSEEGNALVDKIFETIATTAYRTSIELAKEKGSFPYLV 603

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G+          +      +R +       +   +++++ +   G+RNS+ + +APT + 
Sbjct: 604 GN----------NEQETNHLRMKYINTGYMKKMPEDVRQGILQYGIRNSHLLTVAPTGST 653

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  V + ++    +R                   
Sbjct: 654 GTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAEILQSYLER------------------- 694

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           + E  P++L +   ++ E+ P    +     Q+W+D + S  +      +  ++  +Y +
Sbjct: 695 HPEADPNELPEWFVSSMELSPEAHADVQCVIQRWVDSSLSKTVNAPRGYTVDQVKKVYER 754

Query: 892 AWLMGLKTTYYLRSRSATS--------------VEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            +  G K        S  S              VE +     D +   V + D  +   S
Sbjct: 755 LYKGGAKGGTVYVDGSRDSQVLTLKAEENDMYAVELAGEPEQDTEKKPVVLVDTIADVRS 814

Query: 938 LGIPSSCTSDTECEVC 953
             +         C VC
Sbjct: 815 TSVTYGSEVGDTCPVC 830



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 323 RVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VP 377
           R A GLA  E + +K+     +FY+ L + +F+ +   L+ +G        +C++   V 
Sbjct: 136 RNARGLAEVEVDPQKQVESFEKFYHELVNMNFVPAGRVLYGAGAETDVTYFNCYVMPFVA 195

Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
           D   GI    ++   +    GG+G + + +R   A   G NGKS G + +L         
Sbjct: 196 DSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNALARGVNGKSSGSVSWLDDIAKLTHL 255

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           V QGG R+GA    L  WH D+ EF+  +    
Sbjct: 256 VEQGGSRRGAQMIMLADWHPDILEFIISKMQNP 288


>gi|172065487|ref|YP_001816199.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ambifaria MC40-6]
 gi|171997729|gb|ACB68646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ambifaria MC40-6]
          Length = 598

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 126/629 (20%), Positives = 221/629 (35%), Gaps = 87/629 (13%)

Query: 321 FMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF------ 372
           F RVA  L+L E    +  VE  F+  L                     + +CF      
Sbjct: 27  FHRVAHALSLAEPADFRAQVERAFFLNLQRGAIGAGRILANAGADTGGTMVNCFVHPLPI 86

Query: 373 --LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                V      +  AL +  +     GG+G D++P     A+    + +S      +  
Sbjct: 87  PAGMPVQAVDAALAHALDDARLTLLMGGGIGYDFSPAPPADAYERRFSSESG-ACAAIDR 145

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +    A+   G R+GA    L   H D+  F++ ++     R R    N +  I D FM
Sbjct: 146 FDAMCGALPFAGPRRGAQMGVLRCDHPDLVAFVNAKRG----RSRWPTFNLSVGITDAFM 201

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V  +  W L    +         +  +  Y             ++  + A  LW +++
Sbjct: 202 EAVAHDLPWALVHQTQRHGASGAPARRPDGRY-------------LYATVPARTLWHEIV 248

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ++  P + F D     +P +    + ++N C E  L         C LG I+L   
Sbjct: 249 NAARDSAEPGLLFLDTIRDANPLREHERIDATNPCGEQPLPPY----GSCVLGPIDLSRF 304

Query: 611 FANN-------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
             +         FD+  LA  +R  VR+LDNV+D+    +   +      R IG+G+ G 
Sbjct: 305 VRHPFGVDGKPHFDFATLADAVRVQVRLLDNVLDLTAWPLAAHEHEARRTRRIGVGVTGL 364

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L +L + Y S EA   A   +  +  HA +AS  LA ERGA+ ++  + +  G    
Sbjct: 365 GDTLTMLQLRYDSVEARAFARGIVLTMREHAFAASAALAAERGAFPAYDPAAYLAG---- 420

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQS 781
                               L   ++ + +   G+RNS+ ++ AP  +++       S  
Sbjct: 421 ---------------PAYRMLLPLKVHRAIAQHGLRNSHLLSFAPAGSVSLAFCDNCSNG 465

Query: 782 IDPSYQNLYVK--SNMSGDF--TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837
           I+P+      +      G      V +      ++              H  S+      
Sbjct: 466 IEPALGWTQHRVVRTADGRVRRFRVENHACRLFREL-------------HGDSVQ----- 507

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
              L     TA +I P   +   +  Q  +D   S  + +  + S   +D ++ QAW  G
Sbjct: 508 ---LPDYFVTAADIAPADHVAMLAALQPCVDAGISKTVTIPGQCSLADVDALFFQAWRDG 564

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNA 925
           LK     R     +    T      + + 
Sbjct: 565 LKGITVFRPDPRLAAV-VTDDAAQARRDG 592


>gi|89893068|ref|YP_516555.1| hypothetical protein DSY0322 [Desulfitobacterium hafniense Y51]
 gi|219666336|ref|YP_002456771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfitobacterium hafniense DCB-2]
 gi|89332516|dbj|BAE82111.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536596|gb|ACL18335.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Desulfitobacterium hafniense DCB-2]
          Length = 1153

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 155/379 (40%), Gaps = 46/379 (12%)

Query: 579 VHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRV 631
           +++ +       N   +       CNLGSINL             D+++L    R A R 
Sbjct: 637 INAFDANGIYVHNCGEQPLLPNEACNLGSINLKLMVTEKNGKVVVDWERLGQITRLATRF 696

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVI+ N + +   ++    +R IGLG+MGF   L LL   YAS +AVE A++ M FI 
Sbjct: 697 LDNVIEANTYPLPSIEEMVKGNRKIGLGVMGFADMLILLQTSYASEDAVEYAEKVMNFIQ 756

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             A   S  LA+ERG + +++GS++D GV P                             
Sbjct: 757 TEARLESQRLAEERGTFPNYQGSIYD-GVRP----------------------------- 786

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
                 +RN+    IAPT TI+ ICG S  ++P +   Y K+ M G     VN    +  
Sbjct: 787 ------LRNATLTTIAPTGTISMICGASSGVEPLFAVAYTKTVMDGTPLIEVNPIFQSLA 840

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
           +        ++  +    G++     +P+ ++++  TA EI+P W I   +  QK+ D A
Sbjct: 841 EDYGFNSPELMRKIAE-KGTVLGFPEVPNWVQEVFVTAQEIEPEWHIRIQAAFQKYTDNA 899

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
            S  +   +E + + +   Y  A  +  K     R  S      ST      +  A    
Sbjct: 900 VSKTINFANEATHEDIAKAYELAHELNCKGLTVYRDGSREEQVLSTGITKKAEEKAEEAK 959

Query: 930 DPNSSTHSLGIPSSCTSDT 948
              S      IP   T   
Sbjct: 960 TQVSIPKVPFIPEVNTVLP 978



 Score =  165 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/312 (26%), Positives = 129/312 (41%), Gaps = 38/312 (12%)

Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            +  K             IL  RY    NG   E P+    RVA  +A  E    K   E
Sbjct: 5   ESAPKAWLKANLTPNARVILEKRYLKQENGEVAESPEDMLYRVASIIAQVEETFGKTKKE 64

Query: 342 -------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394
                  FY +++   FM ++PTL N+G    QLS+CF+  V D +  IF A++  A++ 
Sbjct: 65  VKELAKSFYEMMAKLEFMPNSPTLMNAGRDLGQLSACFVLPVEDSMEEIFDAIKSAAIIH 124

Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454
           K  GG G  ++ +R   + +  T G + G + F+KV N    AV QGG R+GA    L  
Sbjct: 125 KSGGGTGFSFSRLRPKNSTVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRV 184

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
            H D+ EF+  +    +D +   + N +  I + FMK V +   + L  P        LY
Sbjct: 185 DHPDIREFITCK----EDNKEITNFNISVGITEEFMKAVQEKRHYNLIDPHTKEADGQLY 240

Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                                      A  +++ ++   +  G P I F D  N  +P  
Sbjct: 241 ---------------------------APEVFQLIVDHAWRNGEPGIIFLDRLNRDNPTP 273

Query: 575 HVGVVHSSNLCT 586
            +G + ++N C 
Sbjct: 274 QLGEIEATNPCV 285


>gi|302874475|ref|YP_003843108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulovorans 743B]
 gi|307690918|ref|ZP_07633364.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           cellulovorans 743B]
 gi|302577332|gb|ADL51344.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium cellulovorans 743B]
          Length = 984

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 118/623 (18%), Positives = 219/623 (35%), Gaps = 72/623 (11%)

Query: 363 TRHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
               Q S+CF+ ++ D L   + I    +    L K   G G +++ +R  G  + G  G
Sbjct: 165 YTRTQASACFILSIEDKLLGNHSISQQFETETRLFKGGSGCGTNFSTIRAKGEKLSG-GG 223

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S GV+ FLK  +  A A+  G   R+ A    L++ H ++ +F+  +       R    
Sbjct: 224 VSSGVMSFLKGLDRNAGAIKSGGTTRRAAKMVILDSSHPEIMDFITWKAKEEQKVRDLGK 283

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           M           + V+        +    SD      K  + A ++  +   R +  V +
Sbjct: 284 MGYDISFDGEAYETVSGQ---NGNNSVRFSDDFMEKVKNLDEAPDSEIQLTGRIDSTVDK 340

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLCTEIT 589
            I    LW+     +++   P   F D  N                  +++++N C E  
Sbjct: 341 SIKVSELWKNFNKAVYDCADPAPMFSDTLNSWHTCPGGEDGKYFEKHNMINATNPCGEYC 400

Query: 590 LNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 +   CNL S+NLL  +      FD +     I  +  +L+  +       E   
Sbjct: 401 F----LDDTSCNLASLNLLNFYDKFAKIFDIESYLHVIGLSQLLLEASVHFGQFPTEDVA 456

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +  +  R  GLG+    + L L+ +PY S E   +    +  ++ H+   S  +A+    
Sbjct: 457 RKTYMFRTTGLGVANGAALLLLMGLPYDSEEGRTVLSSIIGLMTGHSYYVSAMMAKAISP 516

Query: 708 YSSFKGSLWDQ---------------------GVFPIDSIGLLAEVRDELAMNRTSRLPW 746
           +  ++ +                            P+     + E      ++ + +  W
Sbjct: 517 FEKYEINKEHMLKVIRNHARVAGAIKTNFENLNYTPVMVNHEILESLKLTDLSMSLKNSW 576

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQN-LYVKSNMSGDFTVVNS 804
                     G RN+    IAPT TI+      + SI+P + + +Y K       T+VN 
Sbjct: 577 KAALDCGNKYGYRNAQVTVIAPTGTISFAMDCATTSIEPFFNHIVYKKLVGGNYMTIVNP 636

Query: 805 FLVNELKQRDLWDEAMISDLKY-----------------HDGSIGNIERIPDDLKKIHAT 847
            L++ L      ++     L Y                  DG I     + D+   I  T
Sbjct: 637 LLMDALINLGYSEKETNEILSYVMETEMVKGDGYEYEQVKDGKIEGAPHLKDEHLPIFDT 696

Query: 848 AF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
           A         I  +  ++  +     I  + S  + L  + + K  + +   +W +G+K 
Sbjct: 697 ANKCGSGKRYISALGHVKMVAAITPLISGSVSKTVNLPKDATVKDFEDVCLTSWELGIKG 756

Query: 900 TYYLRSRS-ATSVEKSTLKGVDG 921
               R  S A+    S+LK  + 
Sbjct: 757 ITLYRDGSKASQPLNSSLKDAES 779


>gi|89099226|ref|ZP_01172104.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
 gi|89086072|gb|EAR65195.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           NRRL B-14911]
          Length = 849

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 205/492 (41%), Gaps = 50/492 (10%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPD-EVSDLHDL--YGKEFEIAYENYERQADRGEIK 535
            N +  +   FM  V ++A + L  PD E  D   +  Y +E+    +  E +    +++
Sbjct: 366 ANISVCLTKDFMDAVEKDAEYELRFPDVESYDAETMKIYNEEWHKIGDVREWEKLGHKVR 425

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
            +RKI A  LW  +      +  P I F D  N  +  Q +   V ++N C E  L    
Sbjct: 426 TYRKIKAKELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGEQPLAPY- 484

Query: 595 EETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL ++NL       N   D++KLA T+   VR+ DNVID   + +E+ KK    
Sbjct: 485 ---SVCNLAAVNLAEMADKENKTVDFEKLARTVEVGVRMQDNVIDATPYFLEENKKQALG 541

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S +  E+ D+  E I+  A  ASVELA E+G++    
Sbjct: 542 ERRVGLGVMGLHDLLIYCETEYGSEKGNELIDKVFETIAVTAYKASVELAGEKGSFPFLT 601

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G+          +    + +R         +   +++++ +   G+RNS+ + +APT + 
Sbjct: 602 GA----------TDEETSRLRQNFTEAGFMQKMPEDVRQSILEKGIRNSHLLTVAPTGST 651

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  V + +V E   R+   +              
Sbjct: 652 GTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDRNPDAD-------------- 697

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                P++L +   +A E+ P    +     Q+WID + S  +      S ++++ +Y +
Sbjct: 698 -----PENLPEWFISAMELSPEAHADVQCVIQRWIDSSISKTVNAPKGYSVEQVEGVYER 752

Query: 892 AWLMGLKTTYYLRSRSATS------VEKSTLK----GVDGKLNAVPVTDPNSSTHSLGIP 941
            +  G K        S  S       E++T        +     V + D  S   S  + 
Sbjct: 753 LYRGGAKGGTVYVDGSRDSQVLTLKAEENTFDEEETKEEKPKQRVVLVDTISDLRSTDVT 812

Query: 942 SSCTSDTECEVC 953
                   C VC
Sbjct: 813 IGSEVGNTCPVC 824


>gi|152974879|ref|YP_001374396.1| ribonucleoside-diphosphate reductase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023631|gb|ABS21401.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 462

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 116/491 (23%), Positives = 210/491 (42%), Gaps = 57/491 (11%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  +  + +I     E  ++    K    +SA  +  K+  +  E+G+P++ 
Sbjct: 62  APYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKSLDLSARDMLIKIAMIQLESGYPYLM 121

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAH 610
           FK   N + P +++G V  SNLCTEI     + E               CNLGS+N++  
Sbjct: 122 FKSNANQQHPLKNIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNV 181

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++   +   +  L  V D+         KK+N    ++GLG M     L  
Sbjct: 182 MEN-----KEIREAVHAGMEALTAVSDMTVIPNAPTVKKANDELHSVGLGAMNLHGYLAK 236

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI----- 723
             I Y S EA E        +++++I  S+ +A+E+   +  F  S +  G +       
Sbjct: 237 NKIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGTYFEKYETT 296

Query: 724 DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D   +  +V+     +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   + S+
Sbjct: 297 DYSPVTEKVQQLFEGIYIPTKEDWTSLKEEVQKYGLYNSYRLAIAPTQSISYVQNATSSV 356

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    +  ++  +        +L  +      W                          
Sbjct: 357 MPIVSQIESRTYANATTYYPMPYLSKD----TFW-------------------------- 386

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + +A++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ Y
Sbjct: 387 -YYKSAYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLY 445

Query: 902 YLRSRSATSVE 912
           Y R+R  +  E
Sbjct: 446 YTRTRKLSVEE 456


>gi|254255489|ref|ZP_04948805.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
 gi|124901226|gb|EAY71976.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158]
          Length = 636

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 135/632 (21%), Positives = 230/632 (36%), Gaps = 89/632 (14%)

Query: 299 QILYDRYFLHINGSRIEMPQ-AFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCST 355
           Q+L +  F        E  +   F RVA  L+L E    +  +E  F   L         
Sbjct: 43  QLLCNTVFADRYARPGETSRVDIFRRVARALSLAEPAAGRTRIEHAFLANLQRGAIGAGR 102

Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN--------AMLAKYSGGLGNDWTPV 407
                       + +CF+  +          +                  GG+G D++PV
Sbjct: 103 ILANAGAGTGGTMVNCFVHPLAIPPGASIETVDAVLAAALDDARRTLLMGGGIGYDFSPV 162

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
               A+      +S  V   +   +     +   G R+GA  A L   H D+  F+  + 
Sbjct: 163 PPESAYDARRAAESG-VCAAIDRFDAMCGTLPFSGPRRGAQMAVLRCDHPDLAAFVAAKN 221

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
                R R    N +  I D FM+ V  +  W L  P                 Y     
Sbjct: 222 R----RLRWTTFNVSVGITDAFMEAVAYDRPWALVHPSP--------------RYAASAA 263

Query: 528 QADRGEI-KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            ++R +   +   +SA ALW +++T   ++  P + F D  N  +P +    + ++N C 
Sbjct: 264 SSERADGQHLHAIVSARALWHRIVTAARDSAEPGLLFLDTINDANPLRDHERIDATNPCG 323

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDIN 639
           E  L         C LG I+L               FD+D LA  +R  VR+LDNV+D+ 
Sbjct: 324 EQPLPPY----GSCVLGPIDLSRFVRRPFGCGGEPAFDFDTLADAVRIQVRMLDNVLDLT 379

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +   ++     R IG+G+ G   AL +L + Y S +A  +A   +  +  HA SAS 
Sbjct: 380 NWPLAAHEREARRTRRIGVGVTGLGDALTMLRLRYDSADARAVARSIVLTMREHAFSASA 439

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA ERGA+ +F+ S +  G      + L                   ++   +   G+R
Sbjct: 440 RLAAERGAFPAFEPSAYLAGPAHRMPLPL-------------------KVHHAIARHGLR 480

Query: 760 NSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTV----VNSFLVNELKQR 813
           NS+ ++ AP  +++       S  I+P+   +  ++  + D  V    V +      ++ 
Sbjct: 481 NSHLLSFAPAGSVSLAFCDNCSNGIEPALGWVQHRTVRTADGNVRAFRVENHAYRLFREL 540

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873
                          G    +           ATA +I P   +   +  Q  +D   S 
Sbjct: 541 --------------HGDGVGLP-------DYFATAADIAPADHVAMLAALQPCVDAGISK 579

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
            + +  + S  ++D ++  AW   LK     R
Sbjct: 580 TVAMRRQCSLSQVDELFFLAWRERLKGITIFR 611


>gi|319651515|ref|ZP_08005643.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
 gi|317396830|gb|EFV77540.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2]
          Length = 853

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 199/494 (40%), Gaps = 53/494 (10%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  +   FM  V  +A + L  P      +D    Y +E+    +  E      +++
Sbjct: 369 ANISVCLTKEFMDAVENDAEYELRFPDVESYDADTMKTYNEEWHKVGDVREWGKLGYKVR 428

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
           V RKI A  LW  +      +  P I F D  N  +  Q +   V ++N C E  L    
Sbjct: 429 VHRKIKAKELWNLINICATYSAEPGIFFIDNANDMTNAQAYGQKVVATNPCGEQPLAPY- 487

Query: 595 EETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL ++NL       N   +++KL  T+   VR+ DNVID   + +E+ KK    
Sbjct: 488 ---SVCNLAAVNLAEMADKENKTVNFEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALG 544

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S E   + D+  E I+  A  ASVELA+E+G++    
Sbjct: 545 ERRVGLGVMGLHDLLIYCETEYGSEEGNVLIDKVFETIAATAYRASVELAEEKGSFPFLT 604

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G          ++      +R         +   +++++ +   G+RNS+ + +APT + 
Sbjct: 605 G----------ENAEETNRLRKAFTETGFMQKMPEDIRESILQSGIRNSHLLTVAPTGST 654

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  V + +V E   R+   +              
Sbjct: 655 GTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKADIVQEYLDRNPDAD-------------- 700

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                P++L +    A ++ P    +     Q+WID + S  +      S ++++ +Y +
Sbjct: 701 -----PNNLPEWFVAAMDLAPEAHADVQCVIQRWIDSSISKTVNAPKGYSVEQVEQVYER 755

Query: 892 AWLMGLKTTYYLRSRSATSVEKS------------TLKGVDGKLNAVPVTDPNSSTHSLG 939
            +  G K        S  S   +            T+K    K + V V D  S   S  
Sbjct: 756 LYRGGAKGGTVYVDGSRDSQVLTLKAEENSFEDTDTVKKEKSKQHVVLV-DTISDLRSTD 814

Query: 940 IPSSCTSDTECEVC 953
           +         C VC
Sbjct: 815 VTIGSEVGNTCPVC 828



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 313 RIEMPQAFF-----MRVAMGL---ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            IE P   F      R A GL      E ++++   +FY  L + +F+ +   L+ +G  
Sbjct: 122 VIEKPLEIFYEQIAKRNATGLASVEKTEEKRKEWFEKFYQELKNLNFIPAGRVLYGAGAD 181

Query: 365 HP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
                 +C++   V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVQDSREGISEHRKQVMEIMSRGGGVGTNGSTLRPRNTLAKGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G + +L         V QGG R+GA    L  WH D+ EF+  +    
Sbjct: 242 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNP 289


>gi|197104105|ref|YP_002129482.1| ribonucleoside-diphosphate reductase alpha chain [Phenylobacterium
           zucineum HLK1]
 gi|196477525|gb|ACG77053.1| ribonucleoside-diphosphate reductase alpha chain [Phenylobacterium
           zucineum HLK1]
          Length = 570

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 132/587 (22%), Positives = 212/587 (36%), Gaps = 88/587 (14%)

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-----VPDDLYGIFGA 386
           E E       F  LL  F F+        +G     L +CF+          +      A
Sbjct: 42  EREPGLWRGRFRALLEDFRFLPGGRIQAGAGDPAAVLFNCFVLPAFGPGPGAEADRALDA 101

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
           L+E     +  GG+G D +     GA        + G + +L + +        G  R+G
Sbjct: 102 LREAVATLRAGGGVGCDVSGAPPAGAA-AERGPPAPGPVGYLHLWDAACRVFLAGATRQG 160

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           A+   L   H DVE F   +   G   R     N +  + + FM  V  +A W L  P E
Sbjct: 161 ALMGALRCDHPDVEAFAAAKTAPGALSR----FNLSVAVTEAFMAAVAADADWPLRFPVE 216

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566
                                        V R + A  LW ++L   +ETG P + F D 
Sbjct: 217 T--------------------------GPVVRTVRARGLWTRILRCAYETGDPGVLFIDR 250

Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626
            N  +P      + ++N C E+ L     +   C+LGS+NL    A       +L     
Sbjct: 251 INAENPLAWRERLAATNPCGEVPLP----DYGACDLGSLNLTRFVAAPFTPEARLDLAGL 306

Query: 627 TAVRVL-----DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
                      D+VIDI+   +          R IGLG+ G   AL +L + Y    ++ 
Sbjct: 307 AEAAAAAVRLLDDVIDISAFPLAAQADEARATRRIGLGITGLADALVMLGLRYGEAASLR 366

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
            A E+M  I   A  AS  LA+E+GA+ + +      G F                    
Sbjct: 367 AAGEAMRTIRDAAYGASAGLAREKGAFPACEAERLLAGPF-------------------- 406

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVK--SNMSGD 798
           +R   + L+  +   G+RNS+ +A+AP  +I+ + G +S  ++P +  +  +      G+
Sbjct: 407 ARRLPEPLRAAIARHGLRNSHLLAVAPAGSISLLAGGISPGLEPIFAAVQERTLRTSPGE 466

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
              V             W  A ++  +   G    +           A A +I     ++
Sbjct: 467 TRAV------------RWTAASVALWRRATGEAAGLP-------PAFAAAHDIPADAHLD 507

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
             +  Q ++DQA S  + +  E   +    IY  A   GLK     R
Sbjct: 508 MQAALQPYVDQAISKTVNVPVETPFEDFARIYAGAHARGLKGCTAFR 554


>gi|163939260|ref|YP_001644144.1| ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|229010749|ref|ZP_04167946.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
 gi|229132250|ref|ZP_04261106.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|163861457|gb|ABY42516.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|228651188|gb|EEL07167.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228750423|gb|EEM00252.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
          Length = 462

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 117/491 (23%), Positives = 213/491 (43%), Gaps = 57/491 (11%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++ 
Sbjct: 62  APYTVFKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLM 121

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAH 610
           FK   N + P + +G V  SNLCTEI     + E               CNLGS+N++  
Sbjct: 122 FKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNIVNV 181

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++   +   +  L  V D+         KK+N    ++GLG M     L  
Sbjct: 182 MEN-----KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAK 236

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI----- 723
             I Y S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       
Sbjct: 237 NKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETT 296

Query: 724 DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D   +  +++     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+
Sbjct: 297 DYSPVTEKIQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSV 356

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    +  ++  +        +L  +      W                          
Sbjct: 357 MPIVSQIESRTYANATTYYPMPYLSKD----TFW-------------------------- 386

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ Y
Sbjct: 387 -YYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLY 445

Query: 902 YLRSRSATSVE 912
           Y R+R  +  E
Sbjct: 446 YTRTRKLSVEE 456


>gi|167833823|gb|ACA02699.1| RR-1 [Spodoptera frugiperda MNPV]
          Length = 850

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 147/660 (22%), Positives = 256/660 (38%), Gaps = 77/660 (11%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYD 303
           EM     E F   ++       + + +          L   L+++RD+          YD
Sbjct: 221 EMHEDIHESFQVVMKNLYHKNEIGQRLYCLAMVYGEELNKVLRHDRDYT---------YD 271

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                   + +E  Q  FMRVA+ +   + +K    +E Y+++S   +  S      +GT
Sbjct: 272 LRLYENKNNLLERVQHMFMRVALTMYGDDIQKV---IESYHMMSLRMYAHSDLAFACAGT 328

Query: 364 RHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
              QL++ +   V +    I   +  +QE A +    G +      V             
Sbjct: 329 NSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVDLYMQNVS------------ 376

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
               +  L V N+    +    K       ++E WH +V+ F++  +N  D   + + + 
Sbjct: 377 ----VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKNFIETIRNNSD---KVNFLQ 429

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               IPD+FM RV  N  WTL  P+  + L   YG +FE AY  +E++    +I     +
Sbjct: 430 FTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQAYVKFEKEHINAKI-----V 484

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  L + ++  +   G+  + FKD  N              ++  E    +     +V 
Sbjct: 485 KAKDLLKLIIDTMRINGNLSVMFKDTFNNNF-----------SIEDEQVKYNIVFSASVA 533

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
               +NL       QFDY+ L    +  VR LD +I+IN + ++K +        I +G+
Sbjct: 534 VDKCVNLETK----QFDYNLLRRITKNVVRDLDAMININMYPLDKFEN---KKHNIAVGM 586

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            GF   L LL   +   EA  +     E I + AI AS ELA       + K        
Sbjct: 587 QGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEASNELA------EASKELNESGKK 640

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN-ICGVS 779
               +  +  ++ +    N T    W  L ++V+  G++  +   ++ T   A  I G  
Sbjct: 641 KSHRNEKITQQIYNVYTDNETLMWDWQSLHEKVERYGVK--HVTFVSNTYKTAFEILGTK 698

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL-KYHDGSIGNIERIP 838
            +  P    LY    ++     +   LV  L   +L    +I+ +    +GS+ N + IP
Sbjct: 699 TTSGPFNSFLYQIEKIN----YIEEVLVRALAHENLNTPTVINSILATKNGSVQNNDLIP 754

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           D +KK+     E D   L +       +IDQ Q L L+  + +   +     +AW   LK
Sbjct: 755 DHIKKVFKLNTETDCKQL-DYMIENSPYIDQTQELILH--DTNYDNIYCNILKAWQNKLK 811


>gi|125860265|ref|YP_001036435.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV]
 gi|120969410|gb|ABM45853.1| ribonucleotide reductase 1 [Spodoptera frugiperda MNPV]
          Length = 839

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 147/660 (22%), Positives = 255/660 (38%), Gaps = 77/660 (11%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYD 303
           EM     E F   ++       + + +          L   L+++RD+          YD
Sbjct: 210 EMHEDIHESFQVVMKNLYHKNEIGQRLYCLAMIYGEELNKVLRHDRDYT---------YD 260

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                   + +E  Q  FMRVA+ +   + +K    +E Y+++S   +  S      +GT
Sbjct: 261 LRLYENKNNLLERVQHMFMRVALTMYGDDIQKV---IESYHMMSLRMYAHSDLAFACAGT 317

Query: 364 RHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
              QL++ +   V +    I   +  +QE A +    G +      V             
Sbjct: 318 NSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVDLYMQNVS------------ 365

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
               +  L V N+    +    K       ++E WH +V+ F++  +N  D   + + + 
Sbjct: 366 ----VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKNFIETIRNNSD---KVNFLQ 418

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               IPD+FM RV  N  WTL  P+  + L   YG +FE AY  +E++    +I     +
Sbjct: 419 FTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQAYVKFEKEHINAKI-----V 473

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  L + ++  +   G+  + FKD  N              ++  E    +     +V 
Sbjct: 474 KAKDLLKLIIDTMRINGNLSVMFKDTFNNNF-----------SIEDEQVKYNIVFSASVA 522

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
               +NL       QFDY+ L    +  VR LD +I+IN + ++K +        I +G+
Sbjct: 523 VDKCVNLETK----QFDYNLLRRITKNVVRDLDAMININMYPLDKFEN---KKHNIAVGM 575

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            GF   L LL   +   EA  +     E I + AI AS ELA+     +    +   +  
Sbjct: 576 QGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEASNELAEASKELNESGKNKSYRNE 635

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN-ICGVS 779
                I  +         N T    W  L ++V+  G++  +   ++ T   A  I G  
Sbjct: 636 KITQQIYNVYTD------NETLMWDWQSLHEKVERYGVK--HVTFVSNTYKTAFEILGTK 687

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL-KYHDGSIGNIERIP 838
            +  P    LY    ++     +   LV  L   +L    +I+ +    +GS+ N + IP
Sbjct: 688 TTSGPFNSFLYQIEKIN----YIEEVLVRALAHENLNTPTVINSILATKNGSVQNNDLIP 743

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           D +KK+     E D   L +       +IDQ Q L L+  + +   +     +AW   LK
Sbjct: 744 DHIKKVFKLNTETDCKQL-DYMIENSPYIDQTQELILH--DTNYDNIYCNILKAWQNKLK 800


>gi|161522899|ref|YP_001585828.1| hypothetical protein Bmul_5876 [Burkholderia multivorans ATCC
           17616]
 gi|189348270|ref|YP_001941466.1| ribonucleotide reductase-like protein [Burkholderia multivorans
           ATCC 17616]
 gi|160346452|gb|ABX19536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia multivorans ATCC 17616]
 gi|189338408|dbj|BAG47476.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia
           multivorans ATCC 17616]
          Length = 598

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 128/655 (19%), Positives = 228/655 (34%), Gaps = 101/655 (15%)

Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL--- 373
             F RVA  L+L E    + +    F+  L                     + +CF+   
Sbjct: 25  DVFHRVAHALSLAEPAERRAQAERAFFLNLQRGAIGAGRILANAGADNGRTMVNCFVHPL 84

Query: 374 -----TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
                T V      +  AL +  +     GG+G D++PV    A+    +   +G    +
Sbjct: 85  AIPPDTPVQTVDTALAQALDDARVTLLMGGGIGYDFSPVPPADAYERRQSSV-RGACEAI 143

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
              +    A+   G R+GA    L   H D+  F+  ++     R R    N +  + D 
Sbjct: 144 DRFDGMCRALPFTGPRRGAQMGVLRCDHPDLVAFVAAKRG----RSRWPTFNLSVGVTDA 199

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+ V  +  W L              +  +  Y             ++  + A  LW +
Sbjct: 200 FMEAVRHDLPWALVHHAPPRRASGAPPRRPDGRY-------------LYATVPARTLWHE 246

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++    ++  P + F D     +P +    + ++N C E  L         C LG I+L 
Sbjct: 247 IVKAARDSAEPGLLFLDTIRDANPLREHERIDATNPCGEQPLPPY----GSCVLGPIDLS 302

Query: 609 AH-------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                      N +FD+  LA  +R  VR+LDNV+D+    +   +      R +G+G+ 
Sbjct: 303 RFVLHPFGVDENPRFDFATLADAVRIQVRMLDNVLDLTAWPLAAHEHEARRTRRVGVGVT 362

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   AL +L + Y S EA  +A   +  +  HA +AS  LA ERGA+ ++  + +  G  
Sbjct: 363 GLADALTMLRVRYDSAEARTLARTIVLTMREHAFAASAALAAERGAFPAYDPAAYLTG-- 420

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVS 779
                                 L   ++   +   G+RNS+ ++ AP  +++       S
Sbjct: 421 -----------------PAYRTLLPLKVHHTIARHGLRNSHLLSFAPAGSVSLAFCDNCS 463

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P+      +   + D  +       E     L+ E    ++               
Sbjct: 464 NGIEPAVGWTQRRMVRTADGQI--RPFRAENHAYRLFHELHGENV--------------- 506

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           +L     TA +I P   +   +  Q  +D   S  + +  + S  ++D ++ QAW  GLK
Sbjct: 507 ELPGYFVTAADIAPADHVAMLAALQPCVDAGISKTVTMPGQCSLAEVDALFFQAWRDGLK 566

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                R                            +S  +     +      C  C
Sbjct: 567 GITVFR-----------------------PDPRLASVVADDTARARRDGPVCIGC 598


>gi|149183744|ref|ZP_01862151.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
 gi|148848544|gb|EDL62787.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           SG-1]
          Length = 854

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 194/475 (40%), Gaps = 44/475 (9%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  +   FM+ V  +A + L  PD      +    Y + +    +  E +    +++
Sbjct: 369 ANISVCLTSDFMEAVENDAEYELRFPDVEKYDEEEMKFYNENWHEVGDVREWEQMGYKVR 428

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
            +RK+ A  LW  +      +  P I F D  N ++  + +   V ++N C E  L    
Sbjct: 429 TYRKMRAKELWNLINVCATYSAEPGIFFIDNANDKTNAKAYGQKVVATNPCGEQPLAPF- 487

Query: 595 EETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL ++NL       N   D+DKL  T+   VR+ DNVID   + +E+ KK    
Sbjct: 488 ---SVCNLAAVNLAEFADKENKTVDFDKLKKTVEVGVRMQDNVIDATPYFLEQNKKQALG 544

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S E  ++ DE  E I+  A  ASVEL++E+G++   +
Sbjct: 545 ERRVGLGVMGLADLLIYCEKEYGSEEGNKLVDEVFETIAVTAYRASVELSKEKGSFPFLQ 604

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G          ++      +R+            +++++ +   G+RNS+ + +APT + 
Sbjct: 605 G----------ETEEETNRLREAFINTGYMSEMPEDVRQSILDNGIRNSHLLTVAPTGST 654

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GV+  ++P +   Y +S   G F  V + +V E  +R   +  +            
Sbjct: 655 GTMVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVQEYLER---NPEVN----------- 700

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
                PD L +   ++ E+ P    +     Q+WID + S  +      +  ++  +Y +
Sbjct: 701 -----PDSLPEWFVSSMELAPEAHADVQCVIQRWIDSSISKTVNAPRGYTVDQVQGVYER 755

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
            +  G K        S      S +  +  + N+    +          P     
Sbjct: 756 LYKGGAKGGTVYVDGSR----DSQVLTLKAEENSFDDEETEQQAPQGKKPVVLVD 806



 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 313 RIEMPQAFF-----MRVAMGLAL---KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            IE P   +      R A GLA     E ++++   +FY+ L + +F+ +   L+ +G  
Sbjct: 122 VIEKPLEVYYEQIAKRNATGLASVETTEEKRQEWFEKFYHELVNMNFVPAGRVLYGAGAD 181

Query: 365 HP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
                 +C++   V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVKDSRDGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G + +L         V QGG R+GA    L  WH D+ EF+  +    
Sbjct: 242 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNP 289


>gi|319997477|gb|ADV91375.1| rr1 [Spodoptera frugiperda MNPV]
          Length = 838

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 147/660 (22%), Positives = 256/660 (38%), Gaps = 77/660 (11%)

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQILYD 303
           EM     E F   ++       + + +          L   L+++RD+          YD
Sbjct: 209 EMHEDIHESFQVVMKNLYHKNEIGQRLYCLAMVYGEELNKVLRHDRDYT---------YD 259

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
                   + +E  Q  FMRVA+ +   + +K    +E Y+++S   +  S      +GT
Sbjct: 260 LRLYENKNNLLERVQHMFMRVALTMYGDDIQKV---IESYHMMSLRMYAHSDLAFACAGT 316

Query: 364 RHPQLSSCFLTTVPDDLYGI---FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
              QL++ +   V +    I   +  +QE A +    G +      V             
Sbjct: 317 NSTQLANDYKLYVDNCSDNIFLSYKIIQECATIMNCGGAVDLYMQNVS------------ 364

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
               +  L V N+    +    K       ++E WH +V+ F++  +N  D   + + + 
Sbjct: 365 ----VKMLPVFNNMVRHILHKNKIVKLPTIHIELWHHEVKNFIETIRNNSD---KVNFLQ 417

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
               IPD+FM RV  N  WTL  P+  + L   YG +FE AY  +E++    +I     +
Sbjct: 418 FTVDIPDIFMNRVKNNGYWTLLDPESCTSLSSKYGDKFEQAYVKFEKEHINAKI-----V 472

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  L + ++  +   G+  + FKD  N              ++  E    +     +V 
Sbjct: 473 KAKDLLKLIIDTMRINGNLSVMFKDTFNNNF-----------SIEDEQVKYNIVFSASVA 521

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
               +NL       QFDY+ L    +  VR LD +I+IN + ++K +        I +G+
Sbjct: 522 VDKCVNLETK----QFDYNLLRRITKNVVRDLDAMININMYPLDKFEN---KKHNIAVGM 574

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
            GF   L LL   +   EA  +     E I + AI AS ELA       + K        
Sbjct: 575 QGFAETLLLLGYTFDMVEAKALNKLIAETIYYGAIEASNELA------EASKELNESGKK 628

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN-ICGVS 779
               +  +  ++ +    N T    W  L ++V+  G++  +   ++ T   A  I G  
Sbjct: 629 KSYRNEKITQQIYNVYTDNETLMWDWQSLHEKVERYGVK--HVTFVSNTYKTAFEILGTK 686

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL-KYHDGSIGNIERIP 838
            +  P    LY    ++     +   LV  L   +L    +I+ +    +GS+ N + IP
Sbjct: 687 TTSGPFNSFLYQIEKIN----YIEEVLVRALAHENLNTPTVINSILATKNGSVQNNDLIP 742

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898
           D +KK+     E D   L +       +IDQ Q L L+  + +   +     +AW   LK
Sbjct: 743 DHIKKVFKLNTETDCKQL-DYMIENSPYIDQTQELILH--DTNYDNIYCNILKAWQNKLK 799


>gi|228990453|ref|ZP_04150418.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
 gi|228996555|ref|ZP_04156194.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|229004205|ref|ZP_04162006.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228757066|gb|EEM06310.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228763187|gb|EEM12095.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|228768979|gb|EEM17577.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
          Length = 462

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 116/491 (23%), Positives = 209/491 (42%), Gaps = 57/491 (11%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++ 
Sbjct: 62  APYTVYKEYGKHLDDIDIDEMYDELMSNPNVKKKPLDISARDMLIKIAMIQLESGYPYLM 121

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAH 610
           FK   N + P + +G V  SNLCTEI     + E               CNLGS+N++  
Sbjct: 122 FKSNANKQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNV 181

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++   +   +  L  V D+         KK+N    ++GLG M     L  
Sbjct: 182 MEN-----KEIREAVHAGMEALTAVSDMTVIPNAPTVKKANDELHSVGLGAMNLHGYLAK 236

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI----- 723
             I Y S EA E        +++++I  S+ +A+E+   +  F  S +  G +       
Sbjct: 237 NKIAYESAEAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGSYFEKYETT 296

Query: 724 DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D   +  +V+     +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   + S+
Sbjct: 297 DYSPVTDKVQQLFEGIYIPTKEDWTSLKEEVQKHGLYNSYRLAIAPTQSISYVQNATSSV 356

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    +  ++  +        +L  +      W                          
Sbjct: 357 MPIVSQIESRTYANATTYYPMPYLSKD----TFW-------------------------- 386

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ Y
Sbjct: 387 -YYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLY 445

Query: 902 YLRSRSATSVE 912
           Y R+R  +  E
Sbjct: 446 YTRTRKLSVEE 456


>gi|94263673|ref|ZP_01287482.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1]
 gi|93455978|gb|EAT06133.1| hypothetical protein MldDRAFT_1381 [delta proteobacterium MLMS-1]
          Length = 1128

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 36/349 (10%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINL     + + D++KL   +R AV  LDNV+DIN + + + ++    +R I
Sbjct: 672 HESCNLGSINLARMVTDKEIDWEKLGQVVRKAVHFLDNVVDINNYPLPEIERVTKLNRKI 731

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGF   L  L IPY+S EA   A+E M FI   A+ AS+EL + RG + +F  S++
Sbjct: 732 GLGVMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIELGKARGPFPNFSDSIY 791

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G    D                                 +RN+    IAPT TI+ + 
Sbjct: 792 --GRQDPDRP-------------------------------VRNATRTTIAPTGTISILA 818

Query: 777 GVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
           G S  ++P +   +++  M   +   VN       K+ + +   +I  + Y+ G++  IE
Sbjct: 819 GCSSGVEPLFAVSFLRRVMDNDELFEVNPLFEAVAKKENFYSHELIRQIAYN-GTVAGIE 877

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
            +P   ++I  TA +I P   +E  +  Q+  + A S  +    E + +++   Y  A+ 
Sbjct: 878 EVPQKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVSKTINFPHEATEEEVRQSYLLAYE 937

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           +  K     R     +   +  K          +  P        +   
Sbjct: 938 LNCKGMTIYRDGCRDNQVLNIGKTDKKAAQQALLQKPTKRDRPTMLTGC 986



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 38/302 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYN 344
            F      +L  RY      G  +E PQ    RVA  +A  +         E   ++FYN
Sbjct: 19  KFSANAQTVLKKRYLKKDEHGKVLETPQQMLWRVAKTVAEADHLYAQGADTEALGLDFYN 78

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   FM ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  +
Sbjct: 79  LMAGLEFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSF 138

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ 
Sbjct: 139 SRIRPKNDVVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIK 198

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           ++     D    H+ N +  I D FM+ +  N  + L +P                    
Sbjct: 199 VK----SDLDLLHNFNLSVAITDEFMRALADNGEYALRNPRNNE---------------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      + R  SA  ++R+++   + +G P + F D  N  +P    G + S+N 
Sbjct: 239 -----------IIRYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNP 287

Query: 585 CT 586
           C 
Sbjct: 288 CV 289


>gi|229166286|ref|ZP_04294045.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
 gi|228617231|gb|EEK74297.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
          Length = 462

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 118/491 (24%), Positives = 212/491 (43%), Gaps = 57/491 (11%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   +N  + +F
Sbjct: 2   QRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  E+G+P++ 
Sbjct: 62  APYTVFKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLM 121

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAH 610
           FK   N + P + +G V  SNLCTEI     + E               CNLGS+N++  
Sbjct: 122 FKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSEINDYGTEDIIRRDINCNLGSLNIVNV 181

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHL 669
             N      ++   +   +  L  V D+         KK+N    ++GLG M     L  
Sbjct: 182 MEN-----KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAK 236

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI----- 723
             I Y S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       
Sbjct: 237 NKIAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETT 296

Query: 724 DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
           D   +   V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+
Sbjct: 297 DYSPVTETVQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSV 356

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
            P    +  ++  +        +L  +      W                          
Sbjct: 357 MPIVSQIESRTYANATTYYPMPYLSKD----TFW-------------------------- 386

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
             + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ Y
Sbjct: 387 -YYKSSYDMNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLY 445

Query: 902 YLRSRSATSVE 912
           Y R+R  +  E
Sbjct: 446 YTRTRKLSVEE 456


>gi|325526630|gb|EGD04172.1| ribonucleotide reductase-like protein [Burkholderia sp. TJI49]
          Length = 598

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 126/610 (20%), Positives = 221/610 (36%), Gaps = 78/610 (12%)

Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT- 375
             F RVA  L+L E    + +    F+  L                     + +CF+   
Sbjct: 25  DVFHRVAHALSLAEPAERRAQVERAFFVNLQRGAIGAGRILANAGADNGRTMINCFVHPL 84

Query: 376 -------VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
                  V      +  AL +  +     GG+G D++PV    A+    +   +G    +
Sbjct: 85  AIPADAPVQAVDTALEHALADARVTLLMGGGIGYDFSPVPPADAYERHQS-SGRGACAAI 143

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
              +    A+   G R+GA    L   H D+  F+  ++     R R    N +  + D 
Sbjct: 144 DRFDAMCQALPFTGPRRGAQMGVLRCDHPDLVAFVTAKRG----RLRWPTFNMSVGVTDA 199

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FM+ V  +  W L              +  +  Y +                SA  LW +
Sbjct: 200 FMEAVRYDLPWALVHHAPPRCASGAPPRLPDGRYLHAMA-------------SARTLWHE 246

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           ++    ++  P + F D     +P +    + ++N C E  L         C LG I+L 
Sbjct: 247 IIKAARDSAEPGLLFLDTIRDANPLREHERIDATNPCGEQPLPPY----GSCVLGPIDLS 302

Query: 609 AH-------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                        +FD+  LA  +R  VR+LDNV+D+    +   +      R IG+G+ 
Sbjct: 303 RFVLHPFSIDEMPRFDFAMLADAVRVQVRMLDNVLDLTAWPLAAHECEARRTRRIGVGVT 362

Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
           G   AL +L + Y S EA   A   +  +  HA +AS  LA ERG + ++  + +  G  
Sbjct: 363 GLADALTMLQLRYDSVEARTFARGIVLRMREHAFAASAALAAERGVFPAYDPAAYLAGPA 422

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVS 779
            +  + L                   ++   +   G+RNS+ ++ APT +++       S
Sbjct: 423 YLTPLPL-------------------KVHHAIARHGLRNSHLLSFAPTGSVSLAFCDNCS 463

Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839
             I+P+      +   + +  +     + E     L+ E    ++K              
Sbjct: 464 NGIEPAVGWQQRRMVRTANGQI--RPFLAENHAYRLFRELYGENVK-------------- 507

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
            L     TA EI P   +   +  Q  +D   S  + +  + S  ++D ++ QAW  GLK
Sbjct: 508 -LPDYFVTAAEIAPADHVAMLAALQPCVDAGISKTVTMPGQCSLAEVDALFFQAWRDGLK 566

Query: 899 TTYYLRSRSA 908
                R    
Sbjct: 567 GITVFRPDPR 576


>gi|332672469|ref|YP_004421713.1| Ribonucleotide reductase, large subunit [Campylobacter phage
           NCTC12673]
 gi|327493646|gb|AEA86505.1| Ribonucleotide reductase, large subunit [Campylobacter phage
           NCTC12673]
          Length = 457

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 217/452 (48%), Gaps = 25/452 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  +GT+  ++  ++   + + C   ++  +  +LS++   + D +   DL   ++ 
Sbjct: 15  INVIKRNGTVEKYSPDKMYKFLLKVCDN-KESYAINILSKSKIKLRDNIRIQDLYDEILS 73

Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           ++   I    P Y K  A+  + K R+ +   +                       +  G
Sbjct: 74  TTVNEISMLYPMYEKFAAKLYIIKYRKNMGDEISL--------------GNVLRLGLSSG 119

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSR-IEMPQAFF 321
           + +     S  + ++  L   +   RD+ F  Y  + + Y +Y L+   +  +E PQ  +
Sbjct: 120 IYSSDFVNSFSENEIQELNKYIDNNRDYLFQNYKAISMFYTKYCLNRTKTIKLETPQITY 179

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381
           MRVAM + + E  + ++    Y+L+S+  F  +TP + NSG    QLSSC L  + DD +
Sbjct: 180 MRVAMFICINENNRVEKIKRIYDLISTHKFTYATPIMLNSGINKGQLSSCVLAKMGDDSH 239

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
            I       A+ +K  GG   D + +R  G+ I G  G S G IPF+K+ + T  A NQG
Sbjct: 240 SILATNDNLAIYSKNKGGTACDISALRATGSIIDGV-GVSSGPIPFIKLLDSTISAWNQG 298

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
             RKG+ C Y  TWH+DV+  + L+ N G +  R  ++  A  I D+F+KR   N  +TL
Sbjct: 299 STRKGSCCVYYPTWHMDVQNLIMLKDNGGTESTRARNLQYAIKIDDVFVKRWYNNENYTL 358

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           F P +   L D +G +FE  Y  YE++++  +    + I+A  L+ ++L    ETG+ +I
Sbjct: 359 FDPKDTQKLLDSFGDDFEKYYLEYEQKSNIRK----KSINARELFDEILKYRVETGNIYI 414

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            F D  N +        V  SNLC EI L +S
Sbjct: 415 FFTDNVNKQGMLN--RTVTQSNLCCEIVLPTS 444


>gi|206562176|ref|YP_002232939.1| ribonucleotide reductase-like protein [Burkholderia cenocepacia
           J2315]
 gi|198038216|emb|CAR54169.1| putative ribonucleotide reductase [Burkholderia cenocepacia J2315]
          Length = 608

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 133/609 (21%), Positives = 221/609 (36%), Gaps = 78/609 (12%)

Query: 320 FFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376
            F RVA  L+L E    +  VE  F+  L                     + +CF+  + 
Sbjct: 36  LFHRVAHTLSLAEPADLRAQVERAFFRNLQHGAIGAGRILANAGADTGGTMVNCFVHPLA 95

Query: 377 -------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
                  P     +  AL +        GG+G D++PV   GA+    + +    +  + 
Sbjct: 96  IPPGARWPAVDAALARALSDAWRTLLMGGGIGYDFSPVPPAGAYERCVSSERGACVA-ID 154

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
             +    A+   G R+GA    L   H D+  F+  ++     R R    N +  + D F
Sbjct: 155 RFDAMCRALPFTGPRRGAQMGVLRCDHPDLAAFVASKRG----RSRWPTFNLSVGVTDAF 210

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           M+ V Q+  W L              +  +  Y             ++  I A  LW ++
Sbjct: 211 MEAVRQDLPWALVHHARPRSGACAPIRRPDGRY-------------LYATIPARTLWHEI 257

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +    ++  P + F D     +P +    + ++N C E  L         C LG I+L  
Sbjct: 258 VGAARDSAEPGLLFLDTIRDTNPLREHERIDATNPCGEQPLPPYGN----CVLGPIDLSR 313

Query: 610 HFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
              +         FD+  LA  +R  VR+LDNV+D+    +   +      R IG+G+ G
Sbjct: 314 FVHHPFGVGGKPRFDFPGLADAVRIQVRMLDNVLDLTEWPLAAHEHEARRTRRIGVGITG 373

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
              AL +L + Y   EA   A   +  +  HA +AS  LA ERG + ++  + +  G   
Sbjct: 374 LGDALTMLRLRYDGTEARAFARSIVLTMREHAFAASAALAAERGVFPAYDPAAYLTGPAH 433

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQ 780
                                L   ++   +   G+RNS+ ++ AP  +++       S 
Sbjct: 434 R-------------------TLLPLKVHHAIARHGLRNSHLLSFAPAGSVSLAFCDNCSN 474

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P+      +   + D   V  F V     R   D         H  S+G        
Sbjct: 475 GIEPALGWTQRRLVRTADG-RVRPFRVENHAYRLFRD--------LHGDSVG-------- 517

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899
           L     TA +I P   +   +  Q  +D   S  + L E  S  ++D ++ QAW  GLK 
Sbjct: 518 LPDYFVTAADIAPADQVAMLAALQPCVDAGISKTVTLPEQCSLAEVDALFFQAWRDGLKG 577

Query: 900 TYYLRSRSA 908
               R    
Sbjct: 578 VTVFRPDPR 586


>gi|83816105|ref|YP_444446.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinibacter ruber DSM 13855]
 gi|83757499|gb|ABC45612.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Salinibacter ruber DSM 13855]
          Length = 894

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 148/718 (20%), Positives = 265/718 (36%), Gaps = 108/718 (15%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS-------FHFMCS 354
            + Y  +      +     + R A  +A  E + +     FY LLS        F F   
Sbjct: 54  EEVYGQNYQYGTDDRVPDTWYRNARAMAQVEDDTDMWTQRFYQLLSGKGLGTGPFPFTPG 113

Query: 355 TPTLFNSGTR--HPQLSSCFLTTVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                N+GT      L +CF++       D +  I   L   A +    GG G     +R
Sbjct: 114 GRIFANAGTGLGKATLINCFVSGFQGHDQDSMDEIQAELTRQAKILASEGGYGFCAHIMR 173

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK------------GAVCAYLETWH 456
             GA I G    + G +  L V N  A  +  G   K            GA    +  WH
Sbjct: 174 PRGARIGGVGSMTPGAVQMLDVWNKQAATIVAGSGMKSDRDDVKDKIRKGAQMVTMGIWH 233

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EF++ ++    +  R H  N +  I D FM+ V  +  W L  P +  +  + Y +
Sbjct: 234 PDIIEFIEAKQ----EPGRLHKFNMSVLITDEFMEAVKNDDTWALRFP-DYENEKEFYKQ 288

Query: 517 EFE---IAY------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            ++    AY               GE  V+    A  +W +++   +    P + F D  
Sbjct: 289 HWDGNLKAYQEKGGTVKTWTDPATGEPAVYE---AREIWNRIMDSTYNRNEPGVIFVDTI 345

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTI 625
           N  +   +V  ++++N C E  L        VC LG++N+  L        DYD +   +
Sbjct: 346 NKENNLGYVEHINATNPCGEQVLPVG----GVCLLGNLNVTQLVDREAGTIDYDLVDDLV 401

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             AVR LDNV D++   +E+ +++    R IGLG  G  SAL ++   Y S E   +  E
Sbjct: 402 PLAVRFLDNVNDLSYVPLEEQQRNLQEKRRIGLGHYGDGSALMMMKTRYGSEEGARVMRE 461

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E ++  A  AS  LA+E+GA+  F                     +DE   +   +  
Sbjct: 462 FQEHLANQAYQASARLAEEKGAFPLF--------------------DKDEYLSSPFVQRL 501

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV--- 801
            D+ K+ +  +G+RNS+ ++I PT   + +    S  I+P + + Y++++          
Sbjct: 502 SDKTKEMIGDLGLRNSHLLSIQPTGNTSTLGNAPSSGIEPVFMHSYIRTSEQPALPDGIN 561

Query: 802 -----VNSFLV-NELKQRD-LWDEA-------------------------MISDLKYHDG 829
                 N++ V  ++      W                            +  D +  D 
Sbjct: 562 RPPMSPNAYEVGQDIDADGTAWTAEEQGDETVLRCQEEGHTHWQIHPTRDICKDQEVKDY 621

Query: 830 SIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
           ++ ++  +   D       T  ++D    +        ++D + S  + + ++   +   
Sbjct: 622 AVRHMETDGTWDPDADWAVTTRDLDVDDHLTQMKALAPFVDSSMSKTVNVPNDYPFEDFK 681

Query: 887 FIYRQAWLMG-LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +Y++A   G +K     R+ + ++V      G D +            T    I   
Sbjct: 682 ELYKKAHDTGVIKGVTTYRAGTMSAVLSGEDDGDDDRTVPRTEAPDRPETLPCAIHRV 739


>gi|257076070|ref|ZP_05570431.1| ribonucleoside reductase class II [Ferroplasma acidarmanus fer1]
          Length = 1136

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 106/356 (29%), Positives = 161/356 (45%), Gaps = 40/356 (11%)

Query: 597  TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
               CNLGSINL     + +F+Y++   TI  A R L+NV+D N   +E  K      R I
Sbjct: 812  YESCNLGSINLAKFVEDGKFNYERYRETIDVATRFLENVVDANKFPVESIKNMTRKTRKI 871

Query: 657  GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
            GLG+MGF  AL +L IPY S EA+E A+  M+ ++  +   S +LA ERG +  + GS +
Sbjct: 872  GLGIMGFADALIMLGIPYNSNEALEFAENVMKTLNDESHMESQKLAAERGVFPGWYGSEY 931

Query: 717  DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                                             +++     MRNS    IAPT TI+ I 
Sbjct: 932  ---------------------------------EEKGIK--MRNSTTTTIAPTGTISIIA 956

Query: 777  GVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G S SI+P +   +V+  ++G +   VN  L N LK R+LW + ++  +    G +GN++
Sbjct: 957  GCSSSIEPLFALAFVRHVLNGQELLEVNPLLENALKSRNLWTQELMEKIAET-GKLGNLD 1015

Query: 836  RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
             +P+D+K +  TA EIDP W +   +  QK+ D   S  + L  + + + +   YR A  
Sbjct: 1016 -LPEDVKNLFITAQEIDPDWHVLMQATFQKYCDSGVSKTINLPFDATREDIAKSYRLAKE 1074

Query: 895  MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950
            +  K     R RS +            K +     D         +    T D  C
Sbjct: 1075 LHCKGITVYRDRSKSQQVLY-AGTNQKKSDEEHKIDLTMKMPDKLLKLGATFDPAC 1129



 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 114/562 (20%), Positives = 209/562 (37%), Gaps = 136/562 (24%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KI+ AI KA ++V+           +    L +     L     S+
Sbjct: 8   VIKRDGSSVPFDKKKIAMAIFKAMLSVKIGS-------MEEANKLADYVAQELET---SS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKI-----TREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
            +  +E IQD VE  LM    + +      + Y+LYRE+R+ +R  +        +   L
Sbjct: 58  EVPTVELIQDTVEKVLMTRRINDVSYIAAAKAYILYREKRNTIRQEKEFIGVKDDLKLSL 117

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
             +                 V EA    +D   KI+  ET K M+  +            
Sbjct: 118 NAVK----------------VLEARYLFKDSEGKII--ETPKQMFHRV------------ 147

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           +  L   +  Y  ++                               Y +      +  V 
Sbjct: 148 AVHLGIIQGLYDYIS-------------------------------YRKTGKLNEKGTVY 176

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
           + +      + +L    N+LK E+                   I+G+  E          
Sbjct: 177 SGI--TKTQNEELERAFNELKKEK------------------AIDGTYTE---------F 207

Query: 326 MGLALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +     +       +E F N++    ++ ++PTL N+G    QLS+CF+  V D +  IF
Sbjct: 208 IDFIKTKKNMINYWIEKFENMMIKLEYVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIF 267

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
             L+  A + K  GG G  ++ +R     +  T G + G + F+++ + T   + QGGKR
Sbjct: 268 DTLKATAEIHKSGGGTGFSFSRLRASDDIVASTKGVASGPVSFMRIFDVTTDVIKQGGKR 327

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           +GA    L   H ++ +F++ +     + +   + N +  + D F +++  +    L +P
Sbjct: 328 RGANMGILNYNHPNIMDFINSKDA---ENKILSNFNISVGVNDEFFEKLDNDENVDLINP 384

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +                            KV  ++ A  LW  ++   + T  P + F 
Sbjct: 385 RD---------------------------GKVTGRVKATTLWNSIIDHAWLTADPGMIFL 417

Query: 565 DPCNIRSPQQHVGVVHSSNLCT 586
           D  N ++P +++G + S+N C 
Sbjct: 418 DEINKKNPVKNIGYIESTNPCV 439


>gi|315924390|ref|ZP_07920612.1| ribonucleotide reductase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622269|gb|EFV02228.1| ribonucleotide reductase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 984

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 122/666 (18%), Positives = 221/666 (33%), Gaps = 66/666 (9%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ F   +     +           +Y+                      Q S+CF+ +
Sbjct: 132 SPQWFNTGIERNYHIGAESDALY---YYDPALKKVVESRDRYTRT------QASACFILS 182

Query: 376 VPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + D L     I         L K   G+G +++P+RG    +    GKS G++ FL+  +
Sbjct: 183 IKDQLLGHRSISDHYVSETKLFKGGSGVGTNFSPLRGENEALSS-GGKSSGMMSFLQGLD 241

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             A A+  G   R+ A    ++  H ++E++++ +    +  R    M     +     +
Sbjct: 242 RNAGAIKSGGTTRRAAKMVIVDVDHPEIEDYINWKVKEEEKVRALGKMGYDMGMDGEAYQ 301

Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
            V         +   V           +   E       R + KV RKI    LW ++  
Sbjct: 302 TVAGQ---NANNSVRVDREFMDKVMHLDEDPEATITLTGRKDHKVDRKIKVSKLWDEINE 358

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLCTEITLNSSSEETAVCNL 602
             +    P + F +  N                   ++++N C+E        +   CNL
Sbjct: 359 AAWACADPGLQFDNIFNNWHTCPAGEDGDVGAKHNRINATNPCSEYAF----LDDTACNL 414

Query: 603 GSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            SIN+   F     + D ++ +        VL+  I       E   + ++  R  GLG+
Sbjct: 415 ASINIFRFFDPKTKKIDIERFSHLAGLIQLVLEASIYWGQFPTEDVAEKSYKFRTTGLGI 474

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-GSLWDQG 719
               S +  L  PY S EA  +       ++ H+   S  +A + GA+  +K    +   
Sbjct: 475 ANTASLILALGYPYDSDEARNLTAALAGLMTGHSYFVSALMASKVGAFECYKINEPYMMR 534

Query: 720 VF--------------------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           V                     P      + +      ++   +  W E     +  G R
Sbjct: 535 VMRNHARIAGTLTDAFEGLDYDPYIIDHPILKRMGFKNLSMRIKDAWQEALDYGEVYGYR 594

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           N+    IAPT TI+      + SI+P Y ++ + K    G   +VN  +   LK      
Sbjct: 595 NAQVSVIAPTGTISFAMDCGATSIEPFYSHVVFKKLVGGGSIEIVNPVMEMALKNLGYTK 654

Query: 818 EAMISDLKY-----HDGS-----IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
             +   + Y      +G      + +   I  +   I  TA  I P   +   S     I
Sbjct: 655 PQIQDVMAYMLEKDENGMTLHQGLEDAPHIKKEHLPIFDTANTIRPEGHVLMVSSITPMI 714

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926
             + S  + L    + + +  I+  A+  G K     R     +   S+     G  +  
Sbjct: 715 SGSVSKTVNLPNAATVQDIADIHLLAYRTGAKAIATYRDGCKAAQPLSSGSDSQGDRDLE 774

Query: 927 PVTDPN 932
            +T   
Sbjct: 775 DLTYQE 780


>gi|261884883|ref|ZP_06008922.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 348

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 153/331 (46%), Positives = 205/331 (61%), Gaps = 8/331 (2%)

Query: 291 FAFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
             F YLG++ LYDRY +       IE+PQ  FM +AM LA  E + +  A +FY+L+S F
Sbjct: 1   MQFAYLGIKTLYDRYLIKDRNAKPIELPQHMFMAIAMFLAQNELDSQSWAKKFYDLISKF 60

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
             M +TPTL N+ T   QLSSC++ + PD++ GIF + +E A+L K+ GG+G DW  VR 
Sbjct: 61  EVMLATPTLSNARTTRHQLSSCYVGSTPDNIEGIFDSYKEMALLCKFGGGIGWDWCKVRA 120

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           +G  I G    + G+IPFLK  ND AVAV+Q G RKGA+  Y+E WH+DV +FLDLRKN+
Sbjct: 121 MGGSIDGHKNAAGGIIPFLKDTNDIAVAVDQLGTRKGAIAVYIEPWHMDVSDFLDLRKNS 180

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G++RRR H++  A WI DLFMKR++QN  WTLF P +  DL DLYG EFE  Y  YE+  
Sbjct: 181 GEERRRAHELFPALWINDLFMKRLSQNERWTLFDPADTPDLCDLYGDEFEKRYIEYEKDP 240

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
              +      + A  LW+K+LT  FETG P++ FKD  N  +P  H G++ SSNLCTEI 
Sbjct: 241 HIAKS----SMLAKELWKKILTNYFETGMPFLCFKDNANRANPNAHKGIIRSSNLCTEIF 296

Query: 590 LNS---SSEETAVCNLGSINLLAHFANNQFD 617
            N+     +   V + GS  L     +   D
Sbjct: 297 QNTEPNYYQTKVVFDDGSFKLFDESEDITVD 327


>gi|323488918|ref|ZP_08094155.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
 gi|323397310|gb|EGA90119.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus
           donghaensis MPA1U2]
          Length = 852

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 111/508 (21%), Positives = 196/508 (38%), Gaps = 52/508 (10%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEI 520
           D    +  +       N +  +   FM  V  +A + L  P       D   +Y ++++ 
Sbjct: 354 DGGTYSVHNEEFLTGANISVTLTSDFMTAVENDADFELRFPAVESYSKDEMAVYNEKWQE 413

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-HVGVV 579
             +  E +     ++V+R + A  LW  +      +  P I F D  N ++    +   V
Sbjct: 414 VGDVREWERMGHGVRVYRTMKARELWNLINICATYSAEPGIFFIDNANEKTNAAAYGQKV 473

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVID 637
            ++N C E  L       +VCNL ++NL           D++ L  T+R  VR+ DNVID
Sbjct: 474 VATNPCGEQPLAPY----SVCNLAAVNLAQFADPKTKTVDFESLKETVRVGVRMQDNVID 529

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
              + +E+ +      R +GLG+MG    L      Y SPE  E+ DE  + I+  A   
Sbjct: 530 ATPYFLEENQVQALGERRVGLGVMGLADLLIYCDREYGSPEGNELVDEIFKTIATAAYEV 589

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           S +LA ERG++    G+          S    A +R         +   + +++ V   G
Sbjct: 590 STDLAAERGSFPFLVGN----------SDEETAALRKAFTETGFMQGMPEHVREAVLEKG 639

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS+ + +APT +   + GVS  ++P Y   Y +S   G F  V + +V+E  + +   
Sbjct: 640 IRNSHLLTVAPTGSTGTMVGVSTGLEPYYSFTYYRSGRLGKFIEVKADIVSEYLKNNPEA 699

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +                    ++L K   T+ ++ P    +     Q+WID + S  +  
Sbjct: 700 DE-------------------ENLPKAFVTSMDLAPEAHADVQCIIQRWIDSSISKTVNA 740

Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
               + ++++ +Y + +  G K        S    +  TLK  D         +      
Sbjct: 741 PRGYTVEQVEGVYERLYKGGAKGGTVYVDGSR-DSQVLTLKAEDNNFEEQQQQEDTGKRP 799

Query: 937 -----------SLGIPSSCTSDTECEVC 953
                      S  +         C VC
Sbjct: 800 IVLIDTIQDLRSTNVTIGSEVGDTCPVC 827



 Score = 77.6 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 313 RIEMPQAFF-----MRVAMGLALKE---TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            IE P   F      R A GLA  E    ++++   +FY  L    F+ +   L+ +G  
Sbjct: 122 VIEKPMEVFYEQIAKRNATGLASVETTPEKRQEWFEKFYQQLVGLKFIPAGRVLYGAGAD 181

Query: 365 HP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
                 +C++   V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 182 TDVTYFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 241

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G + +L         V QGG R+GA    L  WH D+ EF+  +    
Sbjct: 242 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIAEFIISKMQNP 289


>gi|284504237|ref|YP_003406952.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus]
 gi|282935675|gb|ADB03990.1| ribonucleoside diphosphate reductase alpha subunit [Marseillevirus]
          Length = 916

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 215/471 (45%), Gaps = 39/471 (8%)

Query: 168 EACSGLQDVSSKIVLSE-TYKNMYDGL---SESDLETALIFSSRTLIEKEPNYAKVTARF 223
            A     ++S  + +++      +  +   ++S+   +            P++  +  R 
Sbjct: 2   SASELFDELSVGLFVNKNAVSQRFPDIDACTDSEFFKSFSEVCVFKSFIHPDWGVLAGRA 61

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            + KL  E      +  +      M+ +  E F  ++                    L N
Sbjct: 62  EIRKLWSETPEKFSQMAK-----GMKSVLDEKFYEFVASHS--------------QELDN 102

Query: 284 DLKYERDFAFEYLGLQILYDRYFLH---INGS--RIEMPQAFFMRVAMGLALKETEKEKR 338
              +ERD  F+++ +  L   Y L     +G     E PQ  ++RVA  L + +    ++
Sbjct: 103 ICSHERDNRFDWMAINTLEKSYLLKKKCFDGKLRVFERPQHMYLRVATQLWMPD---VQK 159

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             EFY+ LS   +  ++P  FN+G +    SSCFL  +PDDL GI    ++ A+++  SG
Sbjct: 160 IKEFYDGLSLGFYTVASPIFFNAGLKKFSGSSCFLGKIPDDLIGIIDTWKQMAIISSRSG 219

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   + VR   + I G  G+S GV+  L+V +     V+QGG+RKG+   +L  WHID
Sbjct: 220 GVGYSASSVR--HSDIGGGLGESSGVVSLLRVPDAVLGYVDQGGRRKGSGTFFLACWHID 277

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           +  F+D +K  GDD ++   +  A W  DLFMKRV  +  W+LF P E   L ++YGK+F
Sbjct: 278 IFTFVDAKKPGGDDLKKARQLFYAIWTSDLFMKRVETDGNWSLFCPKEAPGLDEIYGKDF 337

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE YE+     E +    + A  LW  +L    E G P+I +KD    ++ Q+H G+
Sbjct: 338 EDLYERYEK-----EGRARTTVKAQELWHHILVAQAEVGMPFIVYKDAICRKNNQKHTGI 392

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
            HS NLC        ++E     + S+ +         +   L   IRTA 
Sbjct: 393 PHSLNLCVAGNTRILTKEKGHVEIESV-MGQELHVWNGEEWSLTKIIRTAT 442



 Score =  212 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 176/385 (45%), Gaps = 40/385 (10%)

Query: 563 FKDPCNIRSPQQHVGVV--HSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDY 618
             D    +  ++  G+     +  C EIT N+S EE A CNL S+ L       + ++D+
Sbjct: 514 NMDTFCFKEEKRGRGMFEGIVTGQCLEITENTSDEEIASCNLSSVCLNSFVDKESKKYDF 573

Query: 619 DKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
             LAS++R  VR L+NV+D N +   +   K +N  HR +G+G+ G      ++ I +  
Sbjct: 574 GALASSVRFIVRSLNNVVDRNYYPSELPSIKTTNLRHRPLGIGVQGLADTFAMMDICWGD 633

Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLL 729
            EA  +  +  E +   A++ S ++++ER +       Y +F GS   +G F  D     
Sbjct: 634 EEARNLNRKIFETMYHAAVTESRKISKERASLGFQTPYYETFPGSPLSKGFFAHDLWDAE 693

Query: 730 AEVRDE--------LAMNRTSRL-----------PWDELKKRVKTIGMRNSNCMAIAPTA 770
           A  ++         +   ++ R             WD+ +      G+ NS  +A+ PTA
Sbjct: 694 ALHKESGIPFDSITVEQVKSYRKKKGIPESFCGFDWDKERLETMRDGVYNSLLIALMPTA 753

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           + A I   ++S +     +  ++ +SG F VVN   ++++    +W++  +       GS
Sbjct: 754 STAQILRNNESFEAFTSIIGKRTVLSGAFAVVNRHFIDDMIGLGVWNKKNMLICLKGQGS 813

Query: 831 IGNI--ERIP-----DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
           +  I  + I      + +K+ +  AFE+    L +    R +++ Q+ S N ++  P+ +
Sbjct: 814 VQGITTDDITKFERLEHIKRKYLNAFELSQKRLCQLGIDRSRYVCQSSSHNCFMRNPTYQ 873

Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRS 907
           KL   +   W  G KT  YYLR+ +
Sbjct: 874 KLTSYHFFQWENGAKTGMYYLRTSA 898


>gi|94265072|ref|ZP_01288839.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1]
 gi|93454451|gb|EAT04742.1| hypothetical protein MldDRAFT_4655 [delta proteobacterium MLMS-1]
          Length = 1128

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 36/349 (10%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINL    A+ + D++KL   +R AV  LDNV+DIN + + + ++    +R I
Sbjct: 672 HESCNLGSINLARMVADKEIDWEKLGQVVRKAVHFLDNVVDINNYPLPEIERVTKLNRKI 731

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGF   L  L IPY+S EA   A+E M FI   A+ AS+EL + RG + +F  S++
Sbjct: 732 GLGVMGFADLLIQLEIPYSSTEATSKAEEVMRFIDQQALEASIELGKARGPFPNFSDSIY 791

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
             G    D                                 +RN+    IAPT TI+ + 
Sbjct: 792 --GRQDPDRP-------------------------------VRNATRTTIAPTGTISILA 818

Query: 777 GVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
             S  ++P +   +++  M   +   VN       K+ + +   +I  + Y+ G++  IE
Sbjct: 819 SCSSGVEPLFAVSFLRRVMDNDELFEVNPLFEAMAKKENFYSHELIRQIAYN-GTVAGIE 877

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
            +P   ++I  TA +I P   +E  +  Q+  + A S  +    E + +++   Y  A+ 
Sbjct: 878 EVPQKYRRIFETAHDITPRNHLEIQAAFQRHTNNAVSKTINFPHEATEEEVRQSYLLAYE 937

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           +  K     R     +   +  K          +  P        +   
Sbjct: 938 LNCKGMTIYRDGCRDNQVLNIGKTDKKAAQQALLQKPTKRDRPTMLTGC 986



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 38/302 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYN 344
            F      +L  RY      G  +E PQ    RVA  +A  +         E  A++FYN
Sbjct: 19  KFSANAQTVLKKRYLKKDEHGKVLETPQQMLWRVARTVAEADHLYTQGADTEALALDFYN 78

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           L++   FM ++PTL N+G +  QLS+CF+  + D +  IF A+++ A++ +  GG G  +
Sbjct: 79  LMAGLEFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSF 138

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +H T G S G + F+ V +     + QGG R+GA  A L   H D+ +F+ 
Sbjct: 139 SRIRPKNDVVHSTKGVSSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIK 198

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           ++     D    H+ N +  I D FM+ +  N  + L +P                    
Sbjct: 199 VK----SDLDLLHNFNLSVAITDEFMRALADNGEYALRNPRNNE---------------- 238

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V +  SA  ++R+++   + +G P + F D  N  +P    G + S+N 
Sbjct: 239 -----------VVKYQSASKIFRQIVRQAWLSGEPGVVFIDRINAENPTPAAGDIESTNP 287

Query: 585 CT 586
           C 
Sbjct: 288 CV 289


>gi|207744361|ref|YP_002260753.1| ribonucleotide reductase large subunit;; protein [Ralstonia
           solanacearum IPO1609]
 gi|206595766|emb|CAQ62693.1| ribonucleotide reductase large subunit;; protein [Ralstonia
           solanacearum IPO1609]
          Length = 222

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 106/207 (51%), Positives = 130/207 (62%), Gaps = 31/207 (14%)

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           GVS  I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+  I+R
Sbjct: 18  GVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARIDR 77

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896
           IP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+   SGK LD  Y+ AWL G
Sbjct: 78  IPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRG 137

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------NS 933
           LKTTYYLR+  AT VEKST+    G LNAV                             +
Sbjct: 138 LKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDAGSVSAAGAAPVAPASALDAVAATA 195

Query: 934 STHSLGIPSSCTSDT------ECEVCQ 954
                   + CT         ECE CQ
Sbjct: 196 PAMPEAEGAVCTMRPGDPGFEECEACQ 222


>gi|196019001|ref|XP_002118908.1| hypothetical protein TRIADDRAFT_62896 [Trichoplax adhaerens]
 gi|190577773|gb|EDV18606.1| hypothetical protein TRIADDRAFT_62896 [Trichoplax adhaerens]
          Length = 285

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 150/332 (45%), Gaps = 53/332 (15%)

Query: 629 VRVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
           +R LDNV    ID    ++ KA+ S +  R++GLG+MGF S L    +P  S  A     
Sbjct: 1   MRFLDNVLQDFIDNAPDSMSKARYSAYRERSVGLGVMGFHSFLQSKMVPMESAMAKSWNL 60

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
              + I+     AS  +++E+GA                D+  L  + R           
Sbjct: 61  RIFKHINDEVNKASKLISEEKGACP--------------DAEELGLKER----------- 95

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVN 803
                           +N  A+APTA+I+ I G  S  I+P   N Y + +++G F + N
Sbjct: 96  ---------------FTNKTAVAPTASISVIAGSTSPGIEPFNSNAYTQKSLTGSFNIRN 140

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863
            +L   L+ +D   E + S +  H+GS+ ++E +  D K +  TAFEI+  WLIE A+ R
Sbjct: 141 KYLKKLLQMKDKDTEEIWSSIMNHEGSVSHLEFLSKDEKDVFKTAFEINQQWLIEHAADR 200

Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
             +I QAQSLN+++  +    +L+ ++  AW  G+K+ YY RS+S    +K ++     K
Sbjct: 201 TPYISQAQSLNIFIPADIDKSELNKLHYLAWKKGVKSLYYCRSKSLQRADKVSITDNVDK 260

Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
                   P  +              EC  CQ
Sbjct: 261 HQLKMKLSPVVTKDEDK-------YDECLACQ 285


>gi|304315898|ref|YP_003851043.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777400|gb|ADL67959.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 1143

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 152/374 (40%), Gaps = 46/374 (12%)

Query: 579 VHSSNLCTEITLNSSSEE---TAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRV 631
           ++S +    I  N   +       CNLGSINL           + DYDKL  T+  AV  
Sbjct: 632 INSFDANGIIIHNCGEQPLLPYESCNLGSINLKNMLKEENGKYEVDYDKLRDTVHNAVHF 691

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           LDNVID N + + +  +     R IGLG+MGF   L +L+IPY S EAVE AD+ M+FI 
Sbjct: 692 LDNVIDANKYPLPQIDEMTKGTRKIGLGVMGFADMLLMLNIPYNSEEAVEFADKLMKFID 751

Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751
             +  AS+ELA++RG +  F  S++      + +                          
Sbjct: 752 EESKKASMELAKKRGVFKYFDKSIYKDKNIKLRNATTTTIAPTGTI-------------- 797

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810
                                + I G S  I+P +     ++ M       VN       
Sbjct: 798 ---------------------SIIAGTSSGIEPLFAIAMTRNVMDNTQLVEVNPIFKEVA 836

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
            +R  + + ++  +    G++  I+ IPDD+KK+  TA +IDP+W I   +  QK +D A
Sbjct: 837 LKRGFYSDELMKKIAE-QGTLKGIDSIPDDVKKVFVTAHDIDPVWHIRMQAAFQKHVDNA 895

Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPV 928
            S  +    + +   +  +Y  A+ +GLK     R  S  + V    +K    +      
Sbjct: 896 VSKTVNFRHDATVDDVREVYELAYRLGLKGVTIYRDGSRDSQVLNLGIKKDKKEETKSDK 955

Query: 929 TDPNSSTHSLGIPS 942
                    +  P 
Sbjct: 956 KSDIKKNQIVPRPR 969



 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 38/303 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  +E  +  F RVA  ++  + +       E+   +FY
Sbjct: 1   MNLTENSKKVLERRYLAKDENGRVVETVEELFERVAKSISEIDKKYDSNANIEELKNKFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
           +++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  DMMTNLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVKSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             ++    D     + N +  I + FMK V     + L  P                   
Sbjct: 181 QCKQ----DNNEITNFNISVGITEDFMKAVESGEDYDLVDPHT----------------- 219

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV  K++A  ++  ++ M ++ G P I F D  N ++P   +G + S+N
Sbjct: 220 ----------KKVVNKLNAREVFELIVEMAWKNGEPGIVFLDRINEKNPTPAIGEIESTN 269

Query: 584 LCT 586
            C 
Sbjct: 270 PCV 272


>gi|255523366|ref|ZP_05390336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|296188300|ref|ZP_06856692.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|255513020|gb|EET89290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
 gi|296047426|gb|EFG86868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Clostridium carboxidivorans P7]
          Length = 1012

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 120/640 (18%), Positives = 223/640 (34%), Gaps = 90/640 (14%)

Query: 359 FNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                   Q S+CF+ ++ D     + I         L K   G G +++ +R  G  + 
Sbjct: 167 SCDNYTRTQASACFILSIEDKLLGPHSISDQYVTETKLFKGGSGTGTNFSSIRAKGEKLS 226

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
           G  G S G++ FLK  +  A A+  G   R+ A    L+  H ++ +F+  +    +  R
Sbjct: 227 G-GGFSSGLMSFLKGLDRNAGAIKSGGTTRRAAKMVCLDVDHPEIMDFMTWKAKEENKVR 285

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD---R 531
               M     I     + V      +  + +      D +  + +    N +   +   R
Sbjct: 286 ALGKMGYDMDIDGEAYETV------SGQNSNNSVRFSDYFMNKVDNLNNNPDETIELKGR 339

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSS 582
            ++K+ + I    +W    +  ++   P   F D  N                   ++S+
Sbjct: 340 VDLKLDKTIGVSDIWEAFNSSSWQCADPAPQFSDTFNAWHTCPAGEDGALNAPYNRINST 399

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C E        + + CNL SIN+   +    ++FD D     I     +L++ I    
Sbjct: 400 NPCGEYAF----LDDSSCNLASINIYRFYNNTTHKFDIDGYLHVIGLVQLILESSIHWGQ 455

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
           +  E   + ++  R  GLG+    S   ++   Y S  A  +A   +  ++ ++   S  
Sbjct: 456 YPTEDIARKSYLFRPTGLGISNAASLFMVMGYAYDSDGARNLASSLIGILTGYSYYISSL 515

Query: 701 LAQERGAYSSFKGSLWDQ-----------GVFPIDSIGLLAEVRD---------ELAMNR 740
           +++E GA+  F+ +               GV P D I                  + ++ 
Sbjct: 516 ISKEIGAFKKFEINKSYMMRVIRNHVRTAGVDPDDVIKNSKTKYGNDFEGLNYTPIKVDH 575

Query: 741 TS-------------RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786
                          +  W +     +  G RN+    IAPT TI+      + SI+P +
Sbjct: 576 NILNKEGLKYISLCLKDCWGKALSYGEEYGYRNAQVSVIAPTGTISFAMDCGATSIEPFF 635

Query: 787 QN-LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH-----------------D 828
            + +Y K +  G  T++N  +   LK     ++ +   L Y                  D
Sbjct: 636 SHIVYKKLSGGGFLTIINPVITVALKNLGYSNDEVEDILDYVLEKETVTENGFTYEKVLD 695

Query: 829 GSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
           G I     + ++   I  T+         I PM  +   +     I  A S  + L +  
Sbjct: 696 GKIEGAPHLKEEHLPIFDTSNRCGSGERYILPMGHVLMVAAITPLISGAISKTVNLPKTA 755

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRS-ATSVEKSTLKGV 919
           +      I   +W +G+K     R  S A     +TL   
Sbjct: 756 TIDDFKNIVLSSWKLGVKGIALYRDSSKAAQPLNTTLTDN 795


>gi|294506192|ref|YP_003570250.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8]
 gi|294342520|emb|CBH23298.1| ribonucleoside-diphosphate reductase [Salinibacter ruber M8]
          Length = 908

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 146/718 (20%), Positives = 265/718 (36%), Gaps = 108/718 (15%)

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS-------FHFMCS 354
            + Y  +      +     + R A  +A  E + +     FY LLS        F F   
Sbjct: 68  EEVYGQNYQYGTDDRVPDTWYRNARAMAQVEDDTDMWTQRFYQLLSGKGLGTGPFPFTPG 127

Query: 355 TPTLFNSGTR--HPQLSSCFLTTVP----DDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                N+GT      L +CF++       D +  I   L   A +    GG G     +R
Sbjct: 128 GRIFANAGTGLGKATLINCFVSGFQGHDQDSMDEIQAELTRQAKILASEGGYGFCAHIMR 187

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK------------GAVCAYLETWH 456
             GA I G    + G +  L V N  A  +  G   K            GA    +  WH
Sbjct: 188 PRGARIGGVGSMTPGAVQMLDVWNKQAATIVAGSGMKSDRDDVKDKIRKGAQMVTMGIWH 247

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+ EF++ ++    +  R H  N +  I D FM+ V  +  W L  P +  +  + Y +
Sbjct: 248 PDIIEFIEAKQ----EPGRLHKFNMSVLITDEFMEAVKNDDTWALRFP-DYENEKEFYKQ 302

Query: 517 EFE---IAY------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            ++    AY               GE  V+    A  +W +++   +    P + F D  
Sbjct: 303 HWDGNLKAYQEKGGTVKTWTDPATGEPAVYE---AREIWNRIMDSTYNRNEPGVIFVDTI 359

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--LAHFANNQFDYDKLASTI 625
           N  +   +   ++++N C E  L        VC LG++N+  L      + +YD +   +
Sbjct: 360 NKENNLAYTEHINATNPCGEQVLPVG----GVCLLGNLNVTQLVDREAGEINYDLVDDLV 415

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
             AVR LDNV D++   +E+ +++    R IGLG  G  SAL ++   Y S E   +  E
Sbjct: 416 PLAVRFLDNVNDLSYVPLEEQQRNLQEKRRIGLGHYGDGSALMMMKTRYGSEEGARVMRE 475

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             E ++  A  AS  LA+E+GA+  F                     +DE   +   +  
Sbjct: 476 FQEHLANQAYQASARLAEEKGAFPLF--------------------DKDEYLSSPFVQRL 515

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTV--- 801
            D+ K+ +  +G+RNS+ ++I PT   + +    S  I+P + + Y++++          
Sbjct: 516 SDKTKEMIGDLGLRNSHLLSIQPTGNTSTLGNAPSSGIEPVFMHSYIRTSEQPALPDGIN 575

Query: 802 -----VNSFLV-NELKQRD-LWDEA-------------------------MISDLKYHDG 829
                 N++ V  ++      W                            +  D +  D 
Sbjct: 576 RPPMSPNAYEVGQDIDADGTAWTAEEQGDETVLRCQEEGHTHWQIHPTRDICKDQEVKDY 635

Query: 830 SIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
           ++ ++  +   D       T  ++D    +        ++D + S  + + ++   +   
Sbjct: 636 AVRHMETDGTWDPDADWAVTTRDLDVDDHLTQMKALAPFVDSSMSKTVNVPNDYPFEDFK 695

Query: 887 FIYRQAWLMG-LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            +Y++A   G +K     R+ + ++V      G D +            T    I   
Sbjct: 696 ELYKKAHDTGVIKGVTTYRAGTMSAVLSGDDDGDDDRTVPRTEAPDRPETLPCAIHRV 753


>gi|15078798|ref|NP_149548.1| 085L [Invertebrate iridescent virus 6]
 gi|82013365|sp|O55716|RIR1_IIV6 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit;
           Contains: RecName: Full=IIV-6 RIR1 intein
 gi|2738400|gb|AAB94427.1| 085L [Invertebrate iridescent virus 6]
          Length = 959

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 114/504 (22%), Positives = 197/504 (39%), Gaps = 72/504 (14%)

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT-----LFSPDEVSDLHDLYGKE 517
           + +     D  +R   +     +     K   +             P     +  L+   
Sbjct: 486 IQVSCIHLDFLKRIQLLLIGMGVTSKITKLHDEKITTMPDGKGGQKPYSCKPIWRLFISS 545

Query: 518 FEIAYENYERQADRGEIKVFRKIS--AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
               Y   E+  +   +K   +        + ++L +  +TG       D      P  H
Sbjct: 546 -SGLYHLSEQGFETRRLKWEPRQPQRNAERFVEVLKVN-KTGR----VDDTYCFTEPINH 599

Query: 576 VGVVHS--SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633
            GV +   +  C+EI L + S  TAVC L S+NL         ++      I+  + +LD
Sbjct: 600 AGVFNGILTGQCSEIILPTDSTRTAVCCLSSLNLE-----YYDEWKDNDLFIKDVMEMLD 654

Query: 634 NVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           N + I              S    R+IG+G++GF S L   +I + S EA ++  +    
Sbjct: 655 NALTIFIEKAPPTISRAVNSAKKERSIGIGVLGFHSFLQQKNISFESDEAAKLNIDIFTK 714

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +     + ++ L   RG+    +G+                                   
Sbjct: 715 LRSKIDTFNLVLGSLRGSPEDAEGT----------------------------------- 739

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
                  G R    MA+APTAT + I G  S S++P   N Y +  +SG F   N +L  
Sbjct: 740 -------GRRFCCTMAVAPTATSSIIMGNTSPSVEPFRANAYRQDTLSGSFLNKNRYLSR 792

Query: 809 ELKQRDLWDE--AMISDLKYHDGSIGNIER--IPDDLKKIHATAFEIDPMWLIESASRRQ 864
            L QR    E   + S++  + GS+  +    + +  K++  TAFEI+  W+I+ A+ RQ
Sbjct: 793 ILSQRLNVKEINEVWSNIVSNGGSVQQLPNNLLSEQEKQVFKTAFEINQKWVIKHAADRQ 852

Query: 865 KWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923
           K+IDQ+QS+NL+L  +   ++L  ++  AW  GLKT YYLRS      +K +   +   +
Sbjct: 853 KYIDQSQSINLFLKPDIHKRELHSLHLNAWKSGLKTLYYLRSEKIADADKISSNHMINSI 912

Query: 924 NAVPVTDPNSSTHSLGIPSSCTSD 947
           N   + +    +  + I      +
Sbjct: 913 NFTNIKESIKDSIKVSILEVRNKE 936



 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 110/297 (37%), Gaps = 51/297 (17%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD  F+ LGL+ L + Y +         PQ  F  V      +       +   Y 
Sbjct: 6   IDLSRDSKFDELGLKRLRESYMMREET----SPQERFAYV----CKQVGTDRDHSQRLYE 57

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             S      STP L      H    SC+L+ + D   G+   L E   L+          
Sbjct: 58  YTSKHWLSLSTPILSFGKANHGLPISCYLSWIEDTKEGLIDTLSEVNQLSM--------L 109

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
               G+G  I  ++ KS GV+  L   +  ++A  Q G R+G+   YL   H DV +F++
Sbjct: 110 GGGVGVGVGIRTSDNKSTGVMSHLNTYDACSLAYKQDGVRRGSYAMYLNNNHPDVLQFIE 169

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDLYGKE 517
           +RK TGD   R  +++    I D FM+ + +       +  W L  P             
Sbjct: 170 MRKPTGDHNIRCLNLHHGLNISDEFMELIEKCDGGGNIDDTWNLIDPHT----------- 218

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
                            K    + A  LW+++L    +TG P+I F D CN      
Sbjct: 219 -----------------KKITTVGARDLWQRILETRMKTGEPYICFIDTCNKHMYDF 258


>gi|134291696|ref|YP_001115465.1| hypothetical protein Bcep1808_6310 [Burkholderia vietnamiensis G4]
 gi|134134885|gb|ABO59210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia vietnamiensis G4]
          Length = 598

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/611 (20%), Positives = 221/611 (36%), Gaps = 78/611 (12%)

Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-- 376
           F RVA  L+L E    + +    F+  L                     + +CF+  +  
Sbjct: 27  FQRVARALSLAEPPELRAQCERAFFQNLQRGAIGAGRILANAGADTGGTMVNCFVHPLAM 86

Query: 377 ------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
                       +  AL +        GG+G D++PV  L A+       +      +  
Sbjct: 87  PADTRARAVDAALTHALGDARRTLLMGGGIGYDFSPVPPLDAYERRAASDAGACAA-IDR 145

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            +    A+   G R+GA  A L   H D+  F+  ++     R R    N +  I D FM
Sbjct: 146 FDAMCRALPFTGPRRGAQMAVLRCDHPDLAAFVAAKRG----RSRWPTFNVSVGITDAFM 201

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           + V  +  W L              ++ +  +             V+  ++A  LWR+++
Sbjct: 202 EAVLHDRPWALVHRAPPHRASVAAPRQPDGNH-------------VYTTVAARTLWREIV 248

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
               ++  P + F D     +P +    + ++N C E  L +       C LG I+L   
Sbjct: 249 AAARDSAEPGLLFVDTIRDANPLREHERIDATNPCGEQPLPAY----GSCVLGPIDLSRF 304

Query: 611 FANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
             +         FD+  LA  +R  VR+LDNV+D+    +   ++     R IG+G+ G 
Sbjct: 305 VLHPFGVEGKPRFDFATLADAVRIQVRMLDNVLDLTAWPLAAHQREARRTRRIGVGVTGL 364

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
             AL +L + Y S +A   A   +  +  HA +AS  LA ERGA+ ++  + +  G    
Sbjct: 365 ADALTMLRLRYDSADARAFARSIVLSMREHAFAASAALAAERGAFPAYDPADYLTGPAHR 424

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQS 781
                               L    ++  +   G+RNS+ ++ AP  +++       S  
Sbjct: 425 -------------------TLLPLNVQHAIARHGLRNSHLLSFAPAGSVSLAFCDNCSNG 465

Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841
           I+P+      +   + D  V      N   +                     +    + L
Sbjct: 466 IEPAVGWTQRRMVHTADGRVRQFHAQNHAYRL-----------------FRALHGEHERL 508

Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTT 900
                TA EI P   +   +  Q  +D   S  + L +  S  ++D ++ QAW  GLK  
Sbjct: 509 PDYFVTAAEIAPADHVAMLAALQPCVDAGISKTVTLPDRCSLAQVDALFVQAWRDGLKGI 568

Query: 901 YYLRSRSATSV 911
              R     + 
Sbjct: 569 TVFRPDPRLAA 579


>gi|312137428|ref|YP_004004765.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanothermus fervidus DSM 2088]
 gi|311225147|gb|ADP78003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methanothermus fervidus DSM 2088]
          Length = 789

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/325 (28%), Positives = 149/325 (45%), Gaps = 38/325 (11%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINL     N + D+ KL    R A+  LDNVID+N +  ++ +K     R +
Sbjct: 481 YESCNLGSINLTKIVKNKKIDWKKLRRITRIAIHFLDNVIDVNKYPTKEIEKMTKKTRKV 540

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGF   L  L IPY SP+A++IA++ M FIS  A   SVEL +ERG++ SFKGS W
Sbjct: 541 GLGVMGFADMLIKLGIPYDSPKALQIAEKLMNFISKEARKKSVELGEERGSFPSFKGSKW 600

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                         E      M   +                              + I 
Sbjct: 601 --------------EKEGYEHMRNATTTTIAPTGTL--------------------SIIA 626

Query: 777 GVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            VS SI+P +   +++  M G     ++       K+R  +   ++  +    GSI + +
Sbjct: 627 NVSSSIEPIFAIAFIREVMEGTVLLEIHPLFEKIAKERGFYSLDLMKKIAK-KGSIQDFD 685

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
            IP+D++++  T+ +IDP+W ++  +  QK++D A S  + L  +   K ++ ++  A+ 
Sbjct: 686 EIPEDIRRLFVTSHDIDPIWHVKMQAAFQKYVDNAVSKTVNLPKDAKPKDVERVFLTAYK 745

Query: 895 MGLKTTYYLRSRS-ATSVEKSTLKG 918
           +G K     R  S    V K     
Sbjct: 746 LGCKGITVYRYGSKREQVLKLNADR 770



 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 37/302 (12%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV-----EFYN 344
                  L++L  RY      G  IE P+  F RVA  +A  +T   ++ +     +FYN
Sbjct: 1   MKLSKNALEVLKRRYLRRNEKGEVIETPKEMFRRVAHHVAKADTIYGEKDISETEEKFYN 60

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           ++ +F F+ ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG+G  +
Sbjct: 61  IMKNFEFLPNSPTLMNAGTAIGQLSACFVLPVGDSIEEIFDALKYMALIHKSGGGVGFSF 120

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  G  +  T G + G + F+++ +     + QGG+R+GA    L   H D+EEF++
Sbjct: 121 SKLRPKGDVVASTGGVASGPVSFMRIFDVATDVIKQGGRRRGANMGVLRYDHPDIEEFIE 180

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K  G    +  + N +    + FM  V +N  + L +P     +  +           
Sbjct: 181 SKKVEG----KFSNFNISVAADEKFMDAVIKNKEYELINPRNKKVVKKV----------- 225

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                            A  ++RK++ M +  G P + F D  N  +P  H+G + ++N 
Sbjct: 226 ----------------KARNIFRKIVKMAWSHGDPGMIFLDHINKHNPTPHLGKIEATNP 269

Query: 585 CT 586
           C 
Sbjct: 270 CV 271


>gi|323705616|ref|ZP_08117190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535093|gb|EGB24870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1180

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 150/354 (42%), Gaps = 43/354 (12%)

Query: 597  TAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
               CNLGSINL           + DY KL  T+  AV  LDNVID N + +++  +    
Sbjct: 693  YESCNLGSINLKNMLKEENGKYEVDYGKLRDTVHNAVHFLDNVIDANKYPLQQIDEMTKG 752

Query: 653  HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
             R IGLG+MGF   L +L+IPY S EAVE AD+ M+FI   + +AS+ELA++RG +  + 
Sbjct: 753  TRKIGLGVMGFADMLLMLNIPYNSEEAVEFADKLMKFIDEESKAASMELAEKRGVFKYYD 812

Query: 713  GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
             S++      + +                                               
Sbjct: 813  KSIYKDKNIRLRNATTTTIAPTGTI----------------------------------- 837

Query: 773  ANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
            + I G S  I+P +     ++ M       VN        +R  + E ++  +    G++
Sbjct: 838  SIIAGTSSGIEPLFAIAMTRNVMDNTQLVEVNPVFKEVALKRGFYSEELMKKIA-QQGTL 896

Query: 832  GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
              I+ IPDD+K++  TA +IDP+W I   S  QK +D A S  +    + +   +  +Y 
Sbjct: 897  KGIDGIPDDVKRVFVTAHDIDPVWHIRMQSAFQKHVDNAVSKTVNFRHDATVDDVREVYE 956

Query: 891  QAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
             A+ +GLK     R  S  + V    +K V+ +       +  +       PS 
Sbjct: 957  LAYKLGLKGVTIYRDGSRDSQVLNLGIKKVEKEGVKEDKQEGRNQIVPRPRPSV 1010



 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 138/303 (45%), Gaps = 38/303 (12%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343
                   ++L  RY     NG  +E  +  F RVA  ++  + E       EK   +FY
Sbjct: 1   MNLTENSKKVLERRYLAKDENGRVVETVEELFERVAKAISDVDKEYDINADTEKVKKKFY 60

Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403
            ++++  F+ ++PTL N+G    QLS+CF+  V D +  IF A++  A++ K  GG G  
Sbjct: 61  EMMTNLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
           ++ +R  GA +  T G + G + F+KV N    AV QGG R+GA    L   H D+ EF+
Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRIDHPDILEFI 180

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             ++    D     + N +  I + FMK V +   + L  P                   
Sbjct: 181 QCKQ----DNNEITNFNISVGITEDFMKAVEKGQDYDLIDPHTN---------------- 220

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                      KV + ++A  +++ ++ M ++ G P I F D  N ++P   VG + S+N
Sbjct: 221 -----------KVVKSLNAREVFKLIVEMAWKNGEPGIVFLDRINEKNPTPLVGEIESTN 269

Query: 584 LCT 586
            C 
Sbjct: 270 PCV 272


>gi|304314793|ref|YP_003849940.1| ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588252|gb|ADL58627.1| predicted ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
          Length = 573

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 89/315 (28%), Positives = 146/315 (46%), Gaps = 38/315 (12%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINL    + +  ++++L  T+ TAV  LDNVID+N + + + ++     R I
Sbjct: 277 YESCNLGSINLSLMVSASGVNWERLRRTVHTAVHFLDNVIDVNSYPLPEVREMTLKTRKI 336

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGF   L  L +PY S EA+ +A+  M FI   A  AS +LA ERG++  F GS+W
Sbjct: 337 GLGVMGFADMLIKLGVPYNSGEALGVAERVMSFIEGEARRASSDLAAERGSFPEFSGSMW 396

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           D+  F                                   GMRN+    IAPT +++ I 
Sbjct: 397 DKMGFE----------------------------------GMRNATLTTIAPTGSLSIIA 422

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S  I+P +   + ++ +   FT  N         R          +    G++  +  
Sbjct: 423 GTSSGIEPLFAVSFTRNILGRKFTENNPLFER--IARGRLKRDTFEMIIS-KGTLHGVSG 479

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895
           +P  ++++  TA EIDP++ ++  +  Q+ +D A S  + L  + S    + ++  A+ +
Sbjct: 480 VPGKIRRLFVTAHEIDPVFHVKMQAAFQRHVDNAVSKTVNLPPDASINDAERVFGAAYEL 539

Query: 896 GLKTTYYLRSRSATS 910
           G K     R  S  +
Sbjct: 540 GCKGITIYRYGSKMN 554



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 67/168 (39%), Gaps = 35/168 (20%)

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           G + G + F++V +     + QGG+R+GA    L   H D+  F++ + + G       +
Sbjct: 2   GVASGPVSFMRVFDVAVEVIKQGGRRRGANMGVLHVSHPDIFGFIEAKTSEG----PLRN 57

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  +PD FM+    +                                 +    +   
Sbjct: 58  FNLSVSVPDRFMEDRKID-------------------------------LINPRTGETVD 86

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            + +  ++++++   + +G P + F+D  N R+P   +G + ++N C 
Sbjct: 87  SVPSREIFKRIVKAAWRSGDPGMIFEDRINRRNPTPSLGRIEATNPCI 134


>gi|288553354|ref|YP_003425289.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
 gi|288544514|gb|ADC48397.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           pseudofirmus OF4]
          Length = 857

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 193/498 (38%), Gaps = 56/498 (11%)

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
            N +  +   FM+ V  +  + L  P   +  ++  + Y + +    +  E +     ++
Sbjct: 368 ANISITLTKEFMEAVENDEEYALRFPDVENYTAEEMESYNETWHEIGDVREWREMGYGVR 427

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS 594
            +R I A  LW  +      +  P I F D  N  +  + +   V ++N C E  L    
Sbjct: 428 TYRLIRAKELWNLINICATYSAEPGIFFIDNANDMTNAKAYGQKVVATNPCGEQPLAPY- 486

Query: 595 EETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +VCNL +INL           ++DKL  T+   VR+ DNVID   + +E   K    
Sbjct: 487 ---SVCNLAAINLAEMADKETKTVNFDKLKRTVEVGVRMQDNVIDATPYFLEDNTKQAKG 543

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG+MG    L      Y S +  ++ D+  E I+  A   S+ELA+E+G++    
Sbjct: 544 ERRVGLGVMGLHDLLIYAETVYGSEKGNQLVDQVFETIATTAYRTSIELAKEKGSFPYLI 603

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G           +      +R+        +   +++++ V   G+RNS+ + +APT + 
Sbjct: 604 G----------QNEEETKALREAFINTGYMKKMPEDIREGVLAYGIRNSHLLTVAPTGST 653

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
             + GVS  ++P +   Y +S   G F  V + +V E                       
Sbjct: 654 GTMVGVSTGLEPYFSFSYFRSGRLGKFIEVKAGIVEEYLN-------------------S 694

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           + E   D+L +   +  E+ P    +     Q+W+D + S  +      + +++  +Y +
Sbjct: 695 HPEASADELPEWFISTMELSPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQAVYER 754

Query: 892 AWLMGLKTTYYLRSRSATSVEKS----------------TLKGVDGKLNAVPVTDPNSST 935
            +  G K        S  +   S                T +  +G+   V + +  +  
Sbjct: 755 LYRGGAKGGTVYVDGSRDAQVLSLKAEENNFEQKELFEQTTEEAEGEKKKVVLVNTITEV 814

Query: 936 HSLGIPSSCTSDTECEVC 953
            S  +         C VC
Sbjct: 815 RSTNVTFGSEVGNTCPVC 832


>gi|300853872|ref|YP_003778856.1| putative ribonucleoside-diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300433987|gb|ADK13754.1| predicted ribonucleoside-diphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 1013

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 121/641 (18%), Positives = 216/641 (33%), Gaps = 89/641 (13%)

Query: 362 GTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
                Q S+CF+ ++ D     + I         L K   G G +++ +R  G  + G  
Sbjct: 170 NYTRTQASACFILSIEDKLLGSHSISNQFVTETKLFKGGSGTGTNFSTIRAKGEKLSGGG 229

Query: 419 GKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
             S G++ FLK  +  A A+  G   R+ A    L+  H ++ +F++ +    D  R   
Sbjct: 230 -SSSGLMSFLKALDKNAGAIKSGGTTRRAAKMVCLDVDHPEIMDFINWKSKEEDKVRALG 288

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE---RQADRGEI 534
            M     I     + V      +  + +      D +  +     +N +       R + 
Sbjct: 289 KMGYDTDIDGEAYETV------SGQNSNNSVRFSDEFMNKVSKLEQNPDDTIELIGRTDP 342

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLC 585
           K+ R      +W       ++   P   F    N                   ++S+N C
Sbjct: 343 KLNRIEKIKNIWDAFNNSAWKCADPAPQFSTTFNAWHTCPAGEDGKLNAPYNRINSTNPC 402

Query: 586 TEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            E        +   CNL SIN+   +   NN FD +     I     +L++ I       
Sbjct: 403 GEYAF----LDDTSCNLASINIYKFYNITNNTFDIEGYLHIIDLVQLILESSIHWGQFPT 458

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           E   +  +  R  GLG+    S   ++  PY S EA  +A   +  ++  +   S  +A+
Sbjct: 459 EDIARKTYLFRTTGLGISNIASLFMVMGYPYDSDEARTLAASLVGILTGESYYVSSLMAK 518

Query: 704 ERGAYSSFKGSLWDQGVF---------------------------------PIDSIGLLA 730
           E G +  F+ +                                        P+     + 
Sbjct: 519 EIGPFKKFEINKPYMMRVLRNHARAASVDIESLQAILGNNFSNEFEDLNYVPLKVKHSVL 578

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQN- 788
           +      + +T +  W    K     G RN+    IAPT TI+      + SI+P + + 
Sbjct: 579 KKEGLSYIGKTLKDCWINALKSGIKFGYRNAQVSVIAPTGTISFAMDCGATSIEPFFSHI 638

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH-----------------DGSI 831
           +Y K +  G  T++N  +   LK      E +   L Y                  DG I
Sbjct: 639 VYKKLSGGGFMTIINPVITIALKNLGYTSEQIEDILSYVLEKENVSENDYTYEKILDGKI 698

Query: 832 GNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883
                + D+   I  T+         IDPM  ++  +     I  + S  + L +  S +
Sbjct: 699 EGAPHLKDEHLSIFDTSNKCGSGERYIDPMGHVKMVASLTPLISGSVSKTVNLPKTASVQ 758

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
               +   +W +G+K     R  S  +   +T       +N
Sbjct: 759 DFKDVVLTSWKLGVKGITLYRDSSKAAQPLNTTLSDSNDIN 799


>gi|15678679|ref|NP_275794.1| ribonucleotide reductase, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621734|gb|AAB85157.1| ribonucleotide reductase, large subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 703

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 93/315 (29%), Positives = 146/315 (46%), Gaps = 39/315 (12%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGS+NL      +  +++KL  TI  AV  LDNVID+N + +   ++     R I
Sbjct: 408 HESCNLGSVNLSLMVGPSGINWEKLRRTIHVAVHFLDNVIDVNSYPLRPVEEMTLRTRKI 467

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MGF   L  L IPY S  A+E+A   M FIS  A  AS+ELA+ERG++  FKGS+W
Sbjct: 468 GLGVMGFADMLIKLGIPYNSVAALEVAGRVMSFISSEARRASMELARERGSFPEFKGSIW 527

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
           D   F                                    MRN+    IAPT +++ I 
Sbjct: 528 DIQGFEC----------------------------------MRNATLTTIAPTGSLSIIA 553

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836
           G S  I+P +   + ++ +   F  ++        + D      I       GS+  +  
Sbjct: 554 GTSSGIEPLFAVSFTRNILGRSFHELHPLFKTMAGRLDKRSLEAIES----RGSLRGVPG 609

Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
           +P  ++++  TA EIDP++ ++  +  Q+++D A S  + L  + S   ++ ++R A  +
Sbjct: 610 VPARIRRLFVTAHEIDPVFHVKMQAAFQRYVDNAVSKTVNLPADSSPADVERVFRAAHEL 669

Query: 896 GLKTTYYLRSRSATS 910
           G K     R  S   
Sbjct: 670 GCKGVTVYRYGSKVD 684



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 133/299 (44%), Gaps = 40/299 (13%)

Query: 293 FEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLS 347
                L++L +RY L   G   +E P+  F RVA  +A  +     +       FY+++ 
Sbjct: 4   LSTTALKVLEERYLLRGEGGEVVETPEEMFRRVARAVASADEAYGDDPAVAEEAFYSVMG 63

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407
           +  F+ ++PTL N+GT   QLS+CF+  V D +  IF +L++ A++ K  GG+G  ++ +
Sbjct: 64  NLEFLPNSPTLMNAGTPINQLSACFVLPVEDSIDSIFSSLRDMAIIHKSGGGVGFSFSRL 123

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           R  G  +  T G + G + F+++ +     + QGG+R+GA    L   H D+  F+D + 
Sbjct: 124 RPRGDIVASTMGVASGPVSFMRIFDVAVDVIKQGGRRRGANMGVLHVSHPDIFSFIDAKS 183

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
             G       + N +  +PD FM                                +    
Sbjct: 184 REG----PLRNFNLSVAVPDEFMD-------------------------------DRPVD 208

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
             +    +V   + +  + ++++   + +G P I F+D  N  +P   +G + ++N C 
Sbjct: 209 LINPRNGEVVDSVESRVILKRIVEAAWRSGDPGILFEDRINRYNPTPQLGRIEATNPCV 267


>gi|82492130|gb|ABB77927.1| ribonucleotide reductase alpha chain [Environmental halophage 1
           AAJ-2005]
          Length = 1061

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 135/681 (19%), Positives = 243/681 (35%), Gaps = 110/681 (16%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
           EF   +     M ++PT+ N+G    QLS+CF+ +  DD+  I   + + A + +  GG+
Sbjct: 146 EFQANMEKLGVMPNSPTIMNAGDELQQLSACFVNSPGDDIRDIHDKVADAADVFQSGGGM 205

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  +  +R  G  +  T G + G I F++  +     +  GGKR+GA    +   H D+ 
Sbjct: 206 GYAFHTLRPYGDVVGSTGGVASGPISFMRTFDQMCATIAAGGKRRGAQMGVMRVSHPDII 265

Query: 461 EFLD-----------LRKNTGDD-------------------------------RRRTHD 478
            F+            L+ N  DD                                    +
Sbjct: 266 HFIHAKNKDVSLKESLKLNDPDDFEHNSFSEALEEASELIDEDGQIPKHLRNAAEGHLSN 325

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +  + D FM  +  +  +TL +P    + H    K  E  Y  Y    D  E+    
Sbjct: 326 FNISVGVTDGFMDALFNDEEYTLINPRT-QEPHIATAKT-EEMYSWY-DLEDHVEVGEEL 382

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---------T 589
            I A  LW +M+    E G P + + D  N              +               
Sbjct: 383 SIPATVLWERMIEGAHENGEPGVVYIDQINKDHSYDVESHCTIVDDDPMSQYEVHATNPC 442

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDY----------------------------DKL 621
                 E   CNL  INL      +  D+                            ++L
Sbjct: 443 GEQQLMEGEACNLCHINLSTIVDQDAPDWRDWLDTHSDDYISLAECVDNYLEVALDYEEL 502

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            S I+T    L+NV+ ++   ++K +++   +R IGLG+MG       L + Y + E  E
Sbjct: 503 DSRIQTGTHFLENVVTMSDFPLDKIEQTVADNRKIGLGIMGLAQMYIQLGVKYGTKEGNE 562

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           IA++ M+ I+  +   S ELAQ RG +++++ S +   +   +                 
Sbjct: 563 IAEQVMKHINHGSKQVSHELAQRRGVFANWEDSKYASPLDYEEWFE-------------- 608

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS----- 796
            R   +   +      +RN N   IAPT T + +   +   +P Y   Y K+        
Sbjct: 609 -RQTGESAAEYADGFKIRNHNTTTIAPTGTTSMLGNTTGGCEPMYNVAYYKNVSGDVQGD 667

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLK------YHDGSIGNIERIPDDLKKIHATAFE 850
                 + + +  L+  D+  +A+  + +        DG + ++E +P+ L ++  T  +
Sbjct: 668 EMLVEFDDYFMRMLEANDVDADAVKQEAQELMQANEFDG-VDDLETVPERLTELFVTTAD 726

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           +            QK +D A S       + S +    ++   +  G K   Y R  +  
Sbjct: 727 LSAHQHASVQCALQKGVDAAISKTTNAPHDSSLEDAKEVFEYIYKNGGKGVTYYRDGTRA 786

Query: 910 SVEKSTLKGVDGKLNAVPVTD 930
               +T        +     +
Sbjct: 787 KQVLTTRAQNSEFSDDGEAAE 807


>gi|221105290|ref|XP_002167438.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 323

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 125/330 (37%), Positives = 188/330 (56%), Gaps = 11/330 (3%)

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH---INGS 312
             +  +          +++      L N ++Y+RD+ F+Y G++ L   Y          
Sbjct: 2   IDKNNDMSPILSDETFNIISKYHRRLQNSIRYDRDYLFDYFGIKTLERSYLYKLHFTKFK 61

Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            IE PQ   MRVA+G+     E     +E Y+L+S  +F  +TPTLFN+GTR  Q+SSCF
Sbjct: 62  IIERPQHMIMRVAIGIHG---EDIDSVIETYDLISQKYFTHATPTLFNAGTRRAQMSSCF 118

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           L  + D++  IF A+++ A  +K++GG+G   + +R  G+ I GTNG + GV+P   + N
Sbjct: 119 LQAIDDNIESIFEAVRDIAFTSKWAGGIGVHMSALRCRGSLIRGTNGIASGVVPLCILLN 178

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
             A  +NQGG+R G++  YLE  H D+ +F DLRKNTG+D  R  D+  A W+P LFMKR
Sbjct: 179 KLAKYINQGGRRNGSIACYLEPHHADIFDFCDLRKNTGNDDDRARDLYLALWVPSLFMKR 238

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           V  +  W+L  PD+   L+ ++ +E+   YE YE      E K  R+I A  LWR +L  
Sbjct: 239 VRDDLTWSLMCPDQCPGLNKVHSEEYVKLYEMYE-----SEGKYVRQIKARDLWRHILEA 293

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
             ETG P+I +KD  NI+S Q+++G + SS
Sbjct: 294 QSETGFPYILYKDNSNIKSNQKNLGTIRSS 323


>gi|167589131|ref|ZP_02381519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia ubonensis Bu]
          Length = 594

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 138/624 (22%), Positives = 229/624 (36%), Gaps = 82/624 (13%)

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTL 358
           L DRY      +R     A F RVA  LAL E    +  VE  FY  +            
Sbjct: 11  LADRYARAGETTRA----AIFRRVAHALALAEPMTSRARVEQLFYRNMQRGAIGAGRIMA 66

Query: 359 FNSGTRHPQLSSCFLTTVP--------DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
                    + +CF+  V              +  AL E  +     GG+G D++P+   
Sbjct: 67  NAGTGAEGTMVNCFVHPVAMPGVASLAAVHAALAQALDEARITLLMGGGVGYDFSPLPPA 126

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
            A+       +  V   +   +    A+   G R+GA  A L   H D+ EF++ +    
Sbjct: 127 TAYERR-GADTPDVCAAIDRFDIVCRALPYAGPRRGAQMAVLRCDHPDIIEFVEAKHG-- 183

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
             RRR    + A  + D FM+ V  N  WTL     V                   + A 
Sbjct: 184 --RRRWPTFSLAVGVTDAFMEAVAGNLPWTL--RHRVPPCSPA-----------CTQTAL 228

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
                 +  + A ALW  ++    ++  P + F D  +     +    + +++ C+E  L
Sbjct: 229 PDGSWTYATVPARALWHVIVNEARDSSEPRLLFLDTIDAADSLRAHERIDATDPCSEQPL 288

Query: 591 NSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTI 643
            +         LG I+L     +         FD+   A  +R  VR+LDN ID+    +
Sbjct: 289 PAY----GSSVLGPIDLSRFVRHPFGVDGKPNFDFTGFADAVRVQVRMLDNAIDLTVWPL 344

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
               +  H  R IG+G+ G   AL +L + Y    A  +A E    +  HA SAS  LA 
Sbjct: 345 AAHAREAHEKRRIGVGVTGLADALTMLRLRYDCGAARMVAREIALTMRHHAFSASASLAA 404

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           ERG + ++  + +  G          A  R  L +          +++ +   G+RNS+ 
Sbjct: 405 ERGVFPAYDAADYLDG----------AAHRAPLPV---------TVRETIARHGLRNSHL 445

Query: 764 MAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821
           M+ AP  +++   G   S  I+P+   +  +   +GD     + L     +   +     
Sbjct: 446 MSFAPAGSVSVAFGDNCSHGIEPAIDWVERREVRTGD-----NHLHAIRAENHAYR---- 496

Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
                       +      L      A +I P   +   +  Q  +D A S  + +D   
Sbjct: 497 --------LFRQLHGEHAPLPDYFVKAADIAPADHVSMLAALQPCVDAAISKTVNVDRRC 548

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904
           S  ++D ++  AW   LK+    R
Sbjct: 549 SLAQIDALFFAAWRERLKSIRIFR 572


>gi|15894334|ref|NP_347683.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023960|gb|AAK79023.1|AE007620_4 Ribonucleotide reductase, vitamin B12-dependent [Clostridium
           acetobutylicum ATCC 824]
 gi|325508462|gb|ADZ20098.1| vitamin B12-dependent ribonucleotide reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 987

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 126/680 (18%), Positives = 222/680 (32%), Gaps = 85/680 (12%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
            PQ F   +++   +    +      FY        +              Q S+CF+ +
Sbjct: 133 SPQWFNTGLSLIYGINGEAQGH----FYYDSKEKKVL-----QSKDSYTRTQASACFIIS 183

Query: 376 VPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + D     + I         L K   G G +++ +R  G  + G  G S G++ FLK  +
Sbjct: 184 IEDKLLGSHSISEQYVTETKLFKGGSGTGTNFSTIRAKGEKLSG-GGISSGLMSFLKGLD 242

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
             A A+  G   R+ A    L   H ++ +++  +    D  +    M           +
Sbjct: 243 RNAGAIKSGGTTRRAAKMLCLNVDHPEIMDYITWKAKEEDKVKALGKMGYDASFEGEAYE 302

Query: 492 RV--TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
            V         + S + +  + +L     E           R +  V +      LW   
Sbjct: 303 TVSGQNANNSVMLSDEFMKKVCNLKNNPDE-----TIELKGRVDSSVNKVEKISNLWEAF 357

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGV---------VHSSNLCTEITLNSSSEETAVC 600
               +    P   F D  N                   ++S+N C E        +   C
Sbjct: 358 NKSSWRCADPSPLFSDTLNAWHTCPGGEDGNFNADYNKINSTNPCGEYAF----LDDTSC 413

Query: 601 NLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
           NL SINL   +   N  FD +     I     +L+  I       E   +  H  R  GL
Sbjct: 414 NLASINLYKFYDTENKTFDLEGYKHVIGLVQLLLEASIHWGQFPTEDVARKTHMFRTTGL 473

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+    + L ++  PY S E   I+   +  ++ ++   S  +A+E GA+  +  +    
Sbjct: 474 GISNLAALLMVMGYPYDSEEGRAISSSLIGVLTGYSYYISSLMAKEVGAFEKYNINKEHM 533

Query: 719 ---------------------GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                                G  P+     + E  D   ++   +  W+   +  +  G
Sbjct: 534 LKVLRNSARAAGSIDTPFEKIGYKPLVVNHSILEKEDLRYISSELKNSWNSALESGEKYG 593

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDL 815
            RN+    +APT TI+      S S++P + ++ Y K +  G  T+ N  +   LK    
Sbjct: 594 FRNAQVSVMAPTGTISFAMDCASTSVEPFFSHVIYKKLSGGGYMTLTNPLIQESLKHLGY 653

Query: 816 WDEAMISDLKYH------------------DGSIGNIERIPDDLKKIHATAFE------- 850
            +  +     Y                   DG I     +  +   I  TA +       
Sbjct: 654 SENEIEDITNYILRKKKVKTDDGTEYETILDGKIEGAPHLKKEHLAIFDTANKCGSGNRF 713

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           I PM  I   +     I  + S  + L  + S +    +   +W +G+K     R  S  
Sbjct: 714 ISPMGHILMVASIVPLISGSVSKTVNLPKDASVEDFKNVIINSWKLGVKGITLYRDSSKE 773

Query: 910 SVEKSTLKGVDGKLNAVPVT 929
           S   +T      K     +T
Sbjct: 774 SQPLNTSLDEASKTAPEDMT 793


>gi|238613293|ref|XP_002398406.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
 gi|215474876|gb|EEB99336.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
          Length = 319

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 129/316 (40%), Positives = 182/316 (57%), Gaps = 6/316 (1%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           NG S G++P L+  + TA  V+QG  KR GA   Y+E WH D+  F+DLRKN G +  R 
Sbjct: 3   NGYSNGIVPMLRFYHATARYVDQGGNKRPGAFAMYIEPWHADIFAFIDLRKNHGKEEVRA 62

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            D+  A WIPDLFMKRV   A W+L  P+E   L D+YG EFE  YE YER     E + 
Sbjct: 63  RDLFYALWIPDLFMKRVEAGANWSLVCPNEAPGLPDVYGAEFEALYEKYER-----EGRA 117

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
              I A  LW  +L    ETG P++ +KD  N +S Q+++GV+ SSNLCTEI   SS +E
Sbjct: 118 RESIPAQKLWYAILEAQVETGTPFMCYKDHANSKSNQKNLGVIKSSNLCTEIMEYSSPDE 177

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
           TAVCNL S+ L       +F++ KL    +     L+ +ID+N + + +A++SN  HR I
Sbjct: 178 TAVCNLASLALPTFVHKGEFNFKKLHDVAKVVAFNLNRIIDVNYYPVPEARRSNMRHRPI 237

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           G+G+ G       L +P+ SPEA  +  +  E I + A+ AS+++A++ G Y ++ GS  
Sbjct: 238 GIGVQGLADTFMALRLPFESPEAKLLNIQIFETIYYAALDASLDIAEKDGPYETWMGSPA 297

Query: 717 DQGVFPIDSIGLLAEV 732
            QG    D  G+    
Sbjct: 298 QQGPMQYDIGGVTPTD 313


>gi|223983087|ref|ZP_03633285.1| hypothetical protein HOLDEFILI_00565 [Holdemania filiformis DSM
           12042]
 gi|223964943|gb|EEF69257.1| hypothetical protein HOLDEFILI_00565 [Holdemania filiformis DSM
           12042]
          Length = 469

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 187/465 (40%), Gaps = 49/465 (10%)

Query: 490 MKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           M+ V ++  + L  P   +      + Y   +    +  E +A    IK +R I A  LW
Sbjct: 1   MEAVERDGTFDLRFPDIANYTPQQKEAYDTHWHKIGDVREWEALGYPIKTYRTIRARDLW 60

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             +      +  P I F D  N  +  + +   V ++N C E  L       +VCNL ++
Sbjct: 61  DLICFCATYSAEPGIFFIDNANKMTNAKAYGQKVVATNPCGEQPLAPY----SVCNLAAV 116

Query: 606 NLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           NL       + +  +D+LA T+   VR+ DNVI+   + ++  +      R +GLG+MG 
Sbjct: 117 NLANFVDKKDGRILFDELAETVALTVRMQDNVINSTPYFLKANEDQALGERRVGLGVMGL 176

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              L      Y SPEA+E  D+    I+  A   SVELA+E+G++  F       G   I
Sbjct: 177 HDMLIWNRKRYGSPEALETIDQVFHCIARAAYQTSVELAKEKGSFPFFT-----SGEAFI 231

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           ++                 +   +++++ V   G+RNS+ + IAPT +   + GVS  ++
Sbjct: 232 NT--------------GYMKQMDEDIRQDVLKYGIRNSHLLTIAPTGSTGTMVGVSTGLE 277

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
           P +   Y +S   G F  VN+ +V+               L  + G         D L +
Sbjct: 278 PYFSFSYFRSGRLGKFIEVNAAIVD-------------QWLALNPGYTR------DTLPE 318

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
              +A E+ P    ++    Q+WID + S  +      S +++  IY + +  G K    
Sbjct: 319 FFVSAMELTPEEHADTQCAIQRWIDSSISKTVNAPRGFSVRQVQHIYERLYAGGAKGGTV 378

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
               S  S   +     +   + + +             +   +D
Sbjct: 379 YVDGSRDSQVLTLSNEEENSWDQMDIERDFGVPVKKTQEAEKKTD 423


>gi|297183206|gb|ADI19346.1| ribonucleotide reductase, alpha subunit [uncultured Chloroflexi
           bacterium HF0500_03M05]
          Length = 465

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 131/333 (39%), Gaps = 38/333 (11%)

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
            +Y  L   +R A R LDNVID N ++++K +K     R IGLG+MGF   L  L + Y 
Sbjct: 1   MNYHGLRDVVRVATRFLDNVIDANTYSVDKIRKMTRDTRKIGLGVMGFADMLTKLRVSYD 60

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           S E +E+    M F+   +   S ELA+ RG + +F GS++D    P             
Sbjct: 61  SDEGLEMGSSIMRFVQRESDQMSQELAEVRGVFPAFNGSIYDAHGQPK------------ 108

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795
                                 MRN+  + +APT TI+ I G S  I+P +   Y K N+
Sbjct: 109 ----------------------MRNACRLTVAPTGTISMIAGCSSGIEPLFALCYNKHNI 146

Query: 796 SG--DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
            G      ++            + + +++ L    GS+   + +P   K++  T+ +I P
Sbjct: 147 LGGESLLYIDQEFEKAAHDEGFYSKELMNYLA-DGGSLQERDDVPGWAKRVFVTSADISP 205

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
              ++  +  Q+ +D A S  +      +   +   Y  AW +  K     R+ S  +  
Sbjct: 206 EMHVKMQAAFQESVDAAISKTINFPNTATEDDVRSAYMLAWELACKGITVYRAGSREAEV 265

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            +     D            S       P+   
Sbjct: 266 LTAGSNNDEPTEEAETFSDASVLVERTRPAVIN 298


>gi|218673204|ref|ZP_03522873.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           GR56]
          Length = 442

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 183/460 (39%), Gaps = 58/460 (12%)

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYE 523
           ++   D++ R   ++    +PD+  +    N    LFSP +V  ++            Y 
Sbjct: 1   KRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSPYDVERVYGVPFTEISVTEKYR 60

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                A   +    +KI A   ++ +  + FE+G+P+I F+D  N  +P    G +  SN
Sbjct: 61  EMVADARISK----KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI--AGRISMSN 114

Query: 584 LCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
           LC+EI   S + E              S NL +       D      TI T++R L  V 
Sbjct: 115 LCSEILQVSEASEYNEDLSYKHLGKDISCNLGSLNIAAAMDSADFGKTIETSIRALTAVS 174

Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D+ +  ++   +K N    AIGLG M     L    I Y S E V+  +     +++HAI
Sbjct: 175 DMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAI 234

Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPW 746
            AS  LA ER  ++  F+ S +  G +         +          D+  ++  ++  W
Sbjct: 235 RASNLLAVERGQSFKGFENSKYASGDYFDKYTEQEWKPATEKVQALFDKSGIHIPTQEDW 294

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSF 805
             LK  V T G+ N N  A+ PT +I+ I   + SI P    + ++     G       F
Sbjct: 295 AALKTAVMTSGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPF 354

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           + N+                                   +  A+EI    +I++ +   +
Sbjct: 355 MTND-------------------------------NLDYYQDAYEIGAEKIIDTYAAATQ 383

Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
            +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 384 HVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 423


>gi|239909099|ref|YP_002955841.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1]
 gi|239798966|dbj|BAH77955.1| ribonucleoside reductase class II [Desulfovibrio magneticus RS-1]
          Length = 1096

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 158/343 (46%), Gaps = 40/343 (11%)

Query: 597 TAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
              CNLGSINL   +     +  D+  LA T+  AVR LDNVID + + +++  +    +
Sbjct: 645 YEACNLGSINLSVFYDPSAPDGIDWAGLAETVHLAVRFLDNVIDASRYPLDQITEMVRAN 704

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R IGLG+MGF   L+LL IPY S EA+ +A++ ME +   A SAS  LA ERGA+ ++  
Sbjct: 705 RKIGLGVMGFADLLYLLRIPYDSTEALTLAEKLMETVQAEARSASKTLAAERGAFPAYPE 764

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           S++                  +  +                    RN+    IAPT T++
Sbjct: 765 SIY-----------------GKRNLGPY-----------------RNATTTTIAPTGTLS 790

Query: 774 NICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
            I G S  I+P +   + +  M G+     N   V  L++     +A++ ++    GSI 
Sbjct: 791 IIAGCSSGIEPLFALSFARHVMDGEKLVEANPHFVTALREAGAHSDALMEEVTR-KGSIA 849

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891
           +I  +P+ L+++  TA +I+P+W ++  +  QK+ D A S  + L    + +++  IY  
Sbjct: 850 HIGLLPEALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNSATKEEIREIYWL 909

Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           A+ +G K     R    ++    T  G             N  
Sbjct: 910 AYELGCKGVTVYRDGCKSNQVLCTGDGAPVDPAKPQSKVRNRP 952



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 133/297 (44%), Gaps = 39/297 (13%)

Query: 298 LQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVEFYNLLSSF 349
           + +L  RY      G+  E  Q  F RVA  +A +E        + E  A +FY+L+   
Sbjct: 1   MVVLSKRYLKKSPEGAPEEDVQGLFWRVAGAIASEEAKYAASPWQPEALARKFYDLMVGM 60

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
            F+ ++PTL N+GT   QL++CF+  V D +  IF A++  A++ K  GG G  ++ +R 
Sbjct: 61  RFLPNSPTLMNAGTPLGQLAACFVLPVGDSMDEIFDAVKFAALIHKSGGGTGFSFSRLRP 120

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
             + +  T G + G + F+++ N     V QGG R+GA    L   H D+ EF+  ++  
Sbjct: 121 KKSRVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFIACKERE 180

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           G+      + N +  + + FM+ V +   + L  P +                       
Sbjct: 181 GE----LTNFNISVALTERFMQAVEKGEDYDLIDPRD----------------------- 213

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                     +SA  ++  ++   +E+G P I F D  N  +P   +G + S+N C 
Sbjct: 214 ----GSKRGSLSAPEVFALLVRKAWESGDPGIVFLDRINRDNPTPALGAIESTNPCV 266


>gi|331028061|ref|YP_004421775.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1]
 gi|301341524|gb|ADK73408.1| ribonucleotide reductase [Roseobacter phage RDJL Phi 1]
          Length = 586

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 131/644 (20%), Positives = 236/644 (36%), Gaps = 111/644 (17%)

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLT-TVPDDL 380
           RVA  LA    + +     +  +     F+ +       G        +CF++ T+ D  
Sbjct: 31  RVAGALA----DDDDHFRAYREITLDQRFLEAGRVQSAIGAPKLVTPYNCFVSQTIEDST 86

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GI           +  GG+G DW+ +R  G  I   +  S G I F+ + ++    +  
Sbjct: 87  EGICDTFSRAFQTMRMGGGIGYDWSTLRPNGDMIVKLDSNSSGPISFMGIFSELCHCIAS 146

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            G R+GA    L   H D+E F+ +++    D  +    N +  + D FM+         
Sbjct: 147 SGHRRGAQMGVLRIDHPDIEAFIRIKQ----DLTKLTGFNISIAVTDEFMEA-------- 194

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                         GK F            R   + ++++  VALW +++   ++   P 
Sbjct: 195 -----------KASGKPF----------TLRFNGRAYKQVDPVALWEEVMRSTWDFADPG 233

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615
           + F D  N  +   +   + ++N C E  L  +      C LGS+NL+ +          
Sbjct: 234 VLFIDTINRMNNLYYCETIAATNPCGEQPLPPN----GACLLGSLNLVRYIKQDALGRRY 289

Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675
           FD+ +  + I   VR +DNV+D   + +E+ K    + R +GLG  G  +A   L   Y 
Sbjct: 290 FDWAQYRADIPHIVRAMDNVVDRAIYPLEEQKAEAISKRRMGLGFTGLANAGEALGFMYG 349

Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735
           SP  +E   + ++ ++ HA  AS  LA E+G++  F   L+  G                
Sbjct: 350 SPGFIEFELQLLDELNHHAYMASSLLAAEKGSFPLFDADLFLAG---------------- 393

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSN 794
                 ++   DE++  +K  G+RNS+  +IAPT TI+     +S   +P +        
Sbjct: 394 ----EYAKQLDDEVRASIKKNGLRNSHLTSIAPTGTISFAHDYISSGCEPVFGF------ 443

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH----ATAFE 850
                      L  E K    +       ++   G I  I  + D   +        + E
Sbjct: 444 ---------EQLDKEGKLLG-YSYDGKRKVRMKSGEI--ITDVSDYGFREFGVEGKMSHE 491

Query: 851 IDPMWLIE---SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL-RS 905
           +     ++   +A+ R   +D + S  +  D          IY Q W  G K      + 
Sbjct: 492 VTIQEHLDVLLAAAAR---VDSSVSKTINTDGSVPWDTFKGIYDQVWERGGKGCTTFNKD 548

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949
                +   T+             D      +    ++C  + +
Sbjct: 549 GKKMGILLGTI------------VDEPDRPDTPKDGATCEINPD 580


>gi|83816554|ref|YP_444285.1| ribonucleoside-diphosphate reductase, alpha chain [Salinibacter
           ruber DSM 13855]
 gi|83757948|gb|ABC46061.1| ribonucleoside-diphosphate reductase, alpha chain [Salinibacter
           ruber DSM 13855]
          Length = 932

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 96/335 (28%), Positives = 150/335 (44%), Gaps = 57/335 (17%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH--- 641
           C+EI L S  +E+ VC L S+N L       +D  K    + T  + LD V+        
Sbjct: 632 CSEIALPSGPDESFVCCLSSMNAL------HYDDWKDTDAVETLTQFLDAVMQEFIDGAK 685

Query: 642 ---TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
               +++A +    HRAIG+G++G+ S L    IP+ S EA     E  + I   + +AS
Sbjct: 686 GMAHMDRAVRFAERHRAIGIGILGWHSYLQSNRIPFESAEASLTGAEIAKTIKERSYAAS 745

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
            ELA   G     +G                                           G 
Sbjct: 746 AELADRFGEPPVLEG------------------------------------------YGR 763

Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           RN+  MA+APT + + I G VS SI+P   N +V+       T  N  L   L+++    
Sbjct: 764 RNATTMAVAPTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVTYKNPHLQALLQEKGRDT 823

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
           +A+  ++   DGS+ +++ + D+ K +  T  EI  M +I+ A+ RQK IDQ+QSLNL +
Sbjct: 824 DAVWDEIALRDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQAAGRQKHIDQSQSLNLAI 883

Query: 878 D--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           D      K ++ +Y +AW  G+K+ YY    +A  
Sbjct: 884 DPGSTPVKDINRLYVEAWKKGVKSLYYQHGVNAAQ 918



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 92/284 (32%), Gaps = 53/284 (18%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
                   L   Y L   G     P+     +A             A  FY  ++  ++ 
Sbjct: 18  LNDEARTFLRRGYLLEGTG-----PEDRVREIAEHAEGLLEMD-GFADRFYEYMARGYYS 71

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412
            ++P   N G       SCF + + D +  I     E  M+ K  GG    +  VR  GA
Sbjct: 72  LASPVWANFGLDRGLPISCFGSYIDDSMEAILNTHAEVGMMTKVGGGTSGYFGDVRPRGA 131

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
            I   NG S G  PF ++ +     V+QG  R+G    Y++  H DVEE+L+++     +
Sbjct: 132 SI-TNNGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYIDIEHPDVEEWLNIQT----E 186

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
                 M     + D +M+ +                                       
Sbjct: 187 GDAIQTMMYGVVVGDDWMEAMIDGDS---------------------------------- 212

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                      ALW K++      G P+I F+       PQ + 
Sbjct: 213 --------DKRALWAKVVESRMNLGIPYILFRGNVQDGRPQVYK 248


>gi|162448649|ref|YP_001611016.1| putative ribonucleoside-diphosphate reductase [Sorangium cellulosum
           'So ce 56']
 gi|161159231|emb|CAN90536.1| putative Ribonucleoside-diphosphate reductase [Sorangium cellulosum
           'So ce 56']
          Length = 1134

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/475 (21%), Positives = 187/475 (39%), Gaps = 20/475 (4%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
              PQ S+CF+  V DDL  I+  ++  A L KY  G G +++ +RG    + G  G S 
Sbjct: 244 YERPQCSACFIQAVQDDLMSIYDLVKSEARLFKYGSGTGTNFSAIRGKQEKLSG-GGTSS 302

Query: 423 GVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G++ FL+V +  A A   G   R+ A    L+  H ++ +F+  +               
Sbjct: 303 GLMSFLEVFDRAAGATKSGGTTRRAAKMVCLDMDHPEIVDFIQWKVREEKKAMALIGAGY 362

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
            +         V+           +        G  +E           R   +V   +S
Sbjct: 363 PSDFNGEAYHTVSGQNSNNSVRVSDEFMRAAATGAAWETR--------SRTTGEVVDTLS 414

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LWR++    +    P + +    N      +   +++SN C+E        + + CN
Sbjct: 415 AKDLWRQIAEAAWGCADPGVQYDTTINRWHTCPNTARINASNPCSEYMF----LDDSACN 470

Query: 602 LGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           L S+NL      +  FD +     +R      + ++D + +      K++H +R +GLG 
Sbjct: 471 LASLNLTKFLREDGSFDIEGYRHAVRVFFVAQEILVDFSAYPTRGIAKNSHDYRPLGLGY 530

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ-- 718
               + L L  IPY S +   +A      +  HA   S E+A  +G ++ F  +      
Sbjct: 531 ANLGTLLMLQGIPYDSDQGRSVAGALTAILCGHAYRVSAEMAAAKGPFAGFARNREPMLR 590

Query: 719 -GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                 D+   +   R   ++ R +   WDE  +  +  G RN+    +APT TI  +  
Sbjct: 591 VMGMHRDAAYAIDRDRCPESLWRAACADWDEAVRIGQEHGYRNAQATVLAPTGTIGLLMD 650

Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
             +  I+P +  + + K    G F +VN  +   L++    +  +   + Y  G+
Sbjct: 651 CDTTGIEPDFSLVKFKKLAGGGYFKIVNQSVPEALRRLGYPEAEVQEIVAYVSGT 705



 Score = 95.3 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 809 ELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLIE 858
            L+        +    +   G  ++     + ++   +   A          + PM  + 
Sbjct: 773 LLQHLGFSAAEIEEANETIIGRMTVEGAPHLREEHYAVFDCANRCGKKGRRYLAPMAHVR 832

Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917
             +  Q ++  A S  + L ++ + +++  IY + W +GLK     R     S   S+  
Sbjct: 833 MMAAAQPFLSGAISKTVNLPNDATVEEVQRIYEEGWRLGLKAVALYRDGCKASQPLSSTS 892

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942
               +           +       +
Sbjct: 893 SDSKESKGKADKAEVPAPIVQAATA 917


>gi|289749069|ref|ZP_06508447.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T92]
 gi|289689656|gb|EFD57085.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T92]
          Length = 611

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 154/626 (24%), Positives = 243/626 (38%), Gaps = 94/626 (15%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSE 184
            R   + +     ++   K+   DGTL+ F+  R+E  V  A   +      +   V   
Sbjct: 33  ERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKA 92

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
               +  G++  +     I                 AR                   +A 
Sbjct: 93  VADALGRGIAPVE----DIQDCVE------------ARL-----------------GEAG 119

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYD 303
             ++  +Y                +       +L   A  L   RD        + +L +
Sbjct: 120 LDDVARVY----------------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRE 162

Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPT 357
           RY LH   G   E       R A  +A  E + E       A  F  LL +  F+ ++PT
Sbjct: 163 RYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPT 222

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           L NSGT    L+ CF+  + D L  IF  L + A L +  GG G  ++ +R  G  +  T
Sbjct: 223 LMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVAST 282

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G + G + FL++ +  A  V+ GG+R+GA  A L+  H D+ +F+  +  +  +     
Sbjct: 283 GGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LP 339

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             N +  + D F++ V +N    L +P                              K+ 
Sbjct: 340 HFNLSVGVTDAFLRAVERNGLHRLVNPRT---------------------------GKIV 372

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
            ++ A  L+  +       G P + F D  N  +P    G + ++N C E+ L       
Sbjct: 373 ARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY---- 428

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
             CNLGSINL    A+ + D+D+L      AVR LD+VID++ +   +  ++    R IG
Sbjct: 429 ESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIG 488

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG+MG    L  L IPY S EAV +A   M  I   A +AS  LA+ERGA+ +F  S + 
Sbjct: 489 LGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFA 548

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSR 743
           +         L       L   R  R
Sbjct: 549 RSGPSATHRSLRRSDGHHLTDRRNHR 574



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 23/156 (14%)

Query: 1   MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49
           M P+   + G        + P     F +  K V      +V +R+G +  FD ++I  A
Sbjct: 11  MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70

Query: 50  IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109
           + +A   V       +    D+   + +     L +      I  +EDIQD VE  L ++
Sbjct: 71  VTRAAREV-------ACDDPDMPGTVAKAVADALGR-----GIAPVEDIQDCVEARLGEA 118

Query: 110 GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
           G   + R Y++YR+ R+++R A++       +   L
Sbjct: 119 GLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 154


>gi|332977689|gb|EGK14454.1| ribonucleoside-diphosphate reductase [Desmospora sp. 8437]
          Length = 1120

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 130/719 (18%), Positives = 246/719 (34%), Gaps = 150/719 (20%)

Query: 363 TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V D   +  GI       A L KY  G G +++ +RG G  + G  G
Sbjct: 189 YSRPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNIRGKGEPLSG-GG 247

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++ FLK+ +  A A+  G   R+ A    L+  H DVEEF++ +    ++ ++   
Sbjct: 248 TSSGLLSFLKIGDRAAGAIKSGGTTRRAAKMVTLDLDHPDVEEFINWK---SNEEKKVRA 304

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIKVF 537
           +  A + P            +   S    ++   +  + F +  E+       R + KV 
Sbjct: 305 LIEAGYDPSF------NGEAYETISGQNSNNSVRVPNEFFRVLDEDGGWNLIRRTDGKVS 358

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---------VVHSSNLCTEI 588
           + + A  LW+++    +E   P + +    N                   +++SN C+E 
Sbjct: 359 KTVPARDLWKQISEAAWECADPGLQYDGTINEWHTTPAGMDGQLGARHNRINASNPCSEY 418

Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NL+  +   N +FD   L    R    VL+  + +  +   + 
Sbjct: 419 MF----LDNTACNLASLNLMKFYDVENTRFDIPALKHASRLWTVVLEISVLMAQYPSREI 474

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG     + L +  IPY S EA+ I       ++  A + S E+A+E G
Sbjct: 475 ARLSYEYRTLGLGYANIGTVLMVSGIPYDSDEALAITGAVTAIMTGTAYATSAEMARELG 534

Query: 707 AYSSF------------KGSLWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDE 748
            + +F                    V   +  GL               +   +RL WDE
Sbjct: 535 PFKAFPLNREHMLRVIRNHRRAAYNVADEEYEGLTVPPMGIHPTHCPPELLEAARLCWDE 594

Query: 749 LKKRVKTIGMRN--SNCMAI-------APTATIAN-----------ICG------VSQSI 782
             +  +  G RN  S  +A            T              + G       +QSI
Sbjct: 595 ALELGEKHGYRNAQSTLLAPTGTIGLLMDCDTTGVEPDFALVKFKKLAGGGYFKIANQSI 654

Query: 783 DPSYQNL-YVKSNMSGDFTVVNSFLV---------NELKQRDLWDEAM------------ 820
            P+ +NL Y ++ +    T V   L            LK++ L D  +            
Sbjct: 655 QPALKNLGYSEAEIREILTYVTGTLSLTDAPHINRRTLKEKGLTDAELDRVEEMLPTVFE 714

Query: 821 ---------------------------------------ISDLKYHDGSI------GNIE 835
                                                   + ++  + ++          
Sbjct: 715 LSFAFNPWTLGEECIQRFGFEPEEVQSPDFNFLQAIGFTRAQIEEANDTVCGMMTTEGAP 774

Query: 836 RIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
            + ++   +  TA          I  M  +   +  Q ++  A S  + +  + + + + 
Sbjct: 775 HLKEEHYPVFDTANPCGKHGKRFIHYMGHLRMMAAAQPFLSGAISKTINMPGDSTVEDIQ 834

Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             Y + W +GLK     R  S +S   ++                     +  + ++ +
Sbjct: 835 HAYHEGWSLGLKAVALYRDGSKSSQPLNSRGDDKEDGEEAEANAKVRMETAEPLAAAAS 893


>gi|258622933|ref|ZP_05717949.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584872|gb|EEW09605.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 381

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 93/401 (23%), Positives = 166/401 (41%), Gaps = 63/401 (15%)

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             +  EI+  + I+A  L++ +  + FE+G+P++ F+D  N  +P    G +  SNLC+E
Sbjct: 1   MVENAEIRKTK-INARELFQTIAEIQFESGYPYLMFEDTVNRANPI--AGRITMSNLCSE 57

Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635
           I                       CNLGS+N+         D   L  ++  AVR L  V
Sbjct: 58  ILQVSEASQFNDDLSYQHLGTDISCNLGSLNIAKTM-----DGQALGQSVEIAVRALTAV 112

Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            ++    ++   +K N    AIGLG M     L    I Y S E V+  +     I+FH 
Sbjct: 113 SEMSQIDSVPSVRKGNDQSHAIGLGQMNLHGFLAREGIYYGSEEGVDFTNCYFAAIAFHC 172

Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745
           + AS ++A+E +  +  F+ S +  G +    +         ++  + +  A+   ++  
Sbjct: 173 LRASNQIAREKQQTFHDFERSRYASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQED 232

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
           W +LK+ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G       
Sbjct: 233 WQQLKEAVMRDGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRKEGQVGRVYYPAP 292

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           ++ N+                                   +  A+EI P  +I++ +   
Sbjct: 293 YMTND-------------------------------NLNYYQDAYEIGPYKIIDTYAAAT 321

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           + +DQ  SL L+     + + ++     AW  G+KT YY+R
Sbjct: 322 RHVDQGLSLTLFFPASATTRDINKAQIYAWKKGIKTLYYVR 362


>gi|327409754|ref|YP_004347174.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus]
 gi|326784928|gb|AEA07062.1| ribonucleoside-diphosphate reductase large chain [Lausannevirus]
          Length = 1027

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 38/363 (10%)

Query: 583  NLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINC 640
              C EI  N+S +E A CNL SI L  +       ++  KL    R  +R+L+NV+D NC
Sbjct: 644  GNCMEICQNTSEDEIASCNLASICLPEYVDKKTGAYNLKKLWRNARKVIRILNNVVDRNC 703

Query: 641  HT--IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
            +   I K K++N  HR IGLG+ G      ++ + +   EA  +  +  E I   AI+ S
Sbjct: 704  YPPEIPKIKRTNLRHRPIGLGVQGLADVFAIMGLSWLDEEAKMLNRQIFETIYHAAITES 763

Query: 699  VELAQERGA-------YSSFKGSLWDQGVFPIDSIGL------------------LAEVR 733
             ++++ER         Y +F GS   +G F  D   +                  + E R
Sbjct: 764  RKMSKERARFGCAVPYYETFPGSPLSKGFFSHDLWDVENIHKKTGIPFDDITIEQVKEHR 823

Query: 734  DELAMNR-TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
                +      + WD  +++ +  G+ NS  +A+ PTA+ A I   +++ +P    +  +
Sbjct: 824  KARGIPESYCGIDWDSERRKTQRDGVYNSFMIALMPTASTAQILRNNEAFEPFTNIIGKR 883

Query: 793  SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI-------ERIPDDLKKIH 845
            + +SG F +VN   V+++ +  +W++   +      GS+  I           + +K+ +
Sbjct: 884  TVLSGTFAIVNKHFVDDMIELGIWNKKNRAICLTGKGSVQGIVCEDPSLADAVEKIKRKY 943

Query: 846  ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904
              AFE+    + E    R +++DQ  S N ++  P+ +KL   +   W  G KT  YYLR
Sbjct: 944  LNAFELSQKRVCELGIDRSRYVDQTSSHNCFMKNPTYQKLTSYHFYQWEEGAKTGMYYLR 1003

Query: 905  SRS 907
            +  
Sbjct: 1004 TSP 1006



 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 208/466 (44%), Gaps = 39/466 (8%)

Query: 168 EACSGLQDVS-SKIVLSETYKNMYDGLS---ESDLETALIFSSRTLIEKEPNYAKVTARF 223
           +A      +S    V       M++ +    E  +  +            P+YA +  R 
Sbjct: 5   KASELFDTLSFGLKVEKSLISPMFEKIDASGEDKILKSFSEVCVFKCYMHPDYAVLAGRA 64

Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
            + +LR           +       + ++   +  ++ +              +   L +
Sbjct: 65  EILRLREITPEKFSDVVRSN-----KGVFDPSYTEFVLK--------------NAEKLNS 105

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQAFFMRVAMGLALKETEKEKR 338
            +  ERD  F+++ +  L   Y +   G        E PQ  ++RVA  L + + +    
Sbjct: 106 FIVEERDMKFDWMAVSTLEKSYLVKRKGYDGNLHLNERPQQLYLRVATFLCMPDMKNI-- 163

Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             ++YN LS   F  ++PTLFN+G +  +LSSCFL  VPD L  +     + A ++  SG
Sbjct: 164 -KKYYNCLSKGKFTMASPTLFNAGLKKFKLSSCFLGIVPDSLNKMAQVWADIAAISSGSG 222

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G   TPVR       G  G+S G + FL+V N     V+Q G+RKG+   +L  WH+D
Sbjct: 223 GVGYSVTPVRHSDI---GGLGQSSGAVSFLRVPNAVLGYVDQAGRRKGSGTFFLACWHVD 279

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
           + +F+D +K  GDD  R  ++  A W  DLFMKRV  N  W+LF P+E   L D+YG EF
Sbjct: 280 IFDFVDAKKPGGDDLMRAREIFYAIWTSDLFMKRVKDNGDWSLFCPNEAPGLDDVYGSEF 339

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  YE YE+     E +  + + A  LW  +L    E G P+I +KD    +S Q++ G+
Sbjct: 340 ETLYERYEK-----EGRAKKVVKAQELWHHILVAQVEVGMPFIAYKDAICRKSNQKNFGM 394

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624
            HS NLC        ++E     + S+        N  ++ +    
Sbjct: 395 PHSLNLCVAGDTRILTKEKGQIEIESVVDENVHVWNGEEWSETKIV 440


>gi|218663033|ref|ZP_03518963.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           IE4771]
          Length = 427

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 106/445 (23%), Positives = 176/445 (39%), Gaps = 58/445 (13%)

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFR 538
               +PD+  +    N    LFSP +V  ++            Y      A   +    +
Sbjct: 1   LGVVVPDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARISK----K 56

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           KI+A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI   S + E  
Sbjct: 57  KINAREFFQVLAEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVSEASEYD 114

Query: 599 VCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650
                       S NL +       D      TI T++R L  V D+ +  ++   +K N
Sbjct: 115 DDLSYKHLGKDISCNLGSLNIAAAMDSADFGKTIETSIRALTAVSDMSHIASVPSIEKGN 174

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YS 709
               AIGLG M     L    I Y S E V+  +     +++HAI AS  LA ERG  + 
Sbjct: 175 DESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFK 234

Query: 710 SFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNS 761
            F+ S +  G +         +          D+  ++  ++  W  LK  V T G+ N 
Sbjct: 235 GFENSKYASGDYFDKYTEQEWKPATEKVQALFDKSGIHIPTQDDWASLKTAVMTSGLYNQ 294

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820
           N  A+ PT +I+ I   + SI P    + ++     G       F+ N+           
Sbjct: 295 NLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPFMTND----------- 343

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879
                                   +  A+EI    +I++ +   + +DQ  SL L+  + 
Sbjct: 344 --------------------NLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDT 383

Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904
            + + ++     AW  G+KT YY+R
Sbjct: 384 ATTRDINKAQIYAWKKGIKTIYYIR 408


>gi|268318085|ref|YP_003291804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Rhodothermus marinus DSM 4252]
 gi|262335619|gb|ACY49416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Rhodothermus marinus DSM 4252]
          Length = 1354

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 142/372 (38%), Gaps = 19/372 (5%)

Query: 596  ETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
            + + CNL S+NL      +  FD ++  + +R  +  ++ ++D   +  EK  +++H +R
Sbjct: 759  DNSACNLASLNLRKFQREDGSFDVERFRAAVRIFITAMEILVDNAGYPSEKIAQNSHDYR 818

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA--QERGAYSSFK 712
             +GLG     + L  + +PY S E   +A      +   A + S E+A  +  G +  F+
Sbjct: 819  PLGLGFANLGAMLMAMGLPYDSDEGRAVAGAITAIMHAEAYARSAEIAAIEHIGPFPGFE 878

Query: 713  GSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
             +              + ++       +   +R     +    +  G RN+    +APT 
Sbjct: 879  KNREPMLEVMRMHQAAVEDIHLSCPAYLKEAARESMARMVALGERYGYRNAQATVLAPTG 938

Query: 771  TIANICGV-SQSIDPSYQNLYVKS---NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            TI+ +    +  I+P    +  K       G F +VN+ +   L++    +E +   L Y
Sbjct: 939  TISFMMDCDTTGIEPDIALVKYKLLAGKGDGMFKIVNNTVPIALRRLGYSEEQIKDILAY 998

Query: 827  --HDGSIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQSLNLYL 877
               + +I     + ++   +   AF+       I  M  I+  +  Q +I  A S  + +
Sbjct: 999  IEENDTIEGAPHLKEEHLPVFDCAFKPYKGQRFIHYMGHIKMMAACQPFISGAISKTVNM 1058

Query: 878  DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
             E  + +++   Y Q W +GLK     R  S  S   ST K       +           
Sbjct: 1059 PEHVTVEEIMDAYIQGWKLGLKALAIYRENSKRSQPLSTRKEDKKGETSGDGMATGEPKV 1118

Query: 937  SLGIPSSCTSDT 948
               +        
Sbjct: 1119 IEKVVEKIVYKP 1130



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 105/282 (37%), Gaps = 55/282 (19%)

Query: 326 MGLALKETEKEKRAVEFY-NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384
           +GL  +   ++  +   Y         +   P         PQ S+CF+ +V D +  I+
Sbjct: 151 VGLYHQYGVRDTGSKTIYGWDFEKQRVVPVDPY------ERPQASACFIISVEDSIDDIW 204

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK- 443
             + E+A L K+  G+G DW+ +R     + G  G+  G + F++V + T   +  GGK 
Sbjct: 205 QLMAESARLFKFGSGVGADWSKLRSTKEKLSG-GGRPSGPVSFMRVQDATGATIKSGGKT 263

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANW 484
           R+ A+   L+ WH D+ EF+  +                              ++N +  
Sbjct: 264 RRAAIMQTLKVWHPDIMEFVTAKAKEEKKAWALIEQGYDGSFNGEAYSSVAFQNVNQSVR 323

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           + D FM+ V     + L +                               KV  +I A  
Sbjct: 324 VTDEFMEAVLARRKFPLKAVTT---------------------------GKVIEEIDAYE 356

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           L  K+    +  G P + ++D        ++ G ++SSN C 
Sbjct: 357 LLYKVAEGTWICGDPGLQYEDTIQRWHTCKNSGPINSSNPCV 398


>gi|238584481|ref|XP_002390574.1| hypothetical protein MPER_10123 [Moniliophthora perniciosa FA553]
 gi|215454140|gb|EEB91504.1| hypothetical protein MPER_10123 [Moniliophthora perniciosa FA553]
          Length = 260

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 14/267 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203
            +   DG        ++   +++ C GL    V+   V  +  + +Y G++  +L+    
Sbjct: 3   YVFKRDGRKERIQFDKITSRIDKLCYGLDMNYVNPIEVTQKVVQGVYQGVTTVELDNLAA 62

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++  L  K P+YA + AR  +  L +E                ++ LY     +     
Sbjct: 63  ETAAYLTTKHPDYAVLAARIAISNLHKETKKNFSAV--------IKDLYEYVNPKNGRPS 114

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
                    ++      L + + Y RDF + + G + L   Y L ING   E PQ   MR
Sbjct: 115 GMIAQDTYEIIQEHKETLDSAIIYNRDFNYNFFGFKTLERSYLLRINGRVAERPQHMIMR 174

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382
            A+G+  ++ E+    ++ Y L+S  +F  ++PTLFN+GT H QLSSCFL  + DD + G
Sbjct: 175 CAVGIHGRDIERV---LQTYELMSEKYFTHASPTLFNAGTPHAQLSSCFLVAMKDDSIEG 231

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRG 409
           I+  L+E AM++K +GG+G     +R 
Sbjct: 232 IYDTLKECAMISKCAGGIGLHIHNIRA 258


>gi|221102509|ref|XP_002163270.1| PREDICTED: similar to RiboNucleotide Reductase family member
           (rnr-1), partial [Hydra magnipapillata]
          Length = 428

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 141/436 (32%), Positives = 200/436 (45%), Gaps = 44/436 (10%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           L Y RD      G  +L DRY L       E  QA F RVA   A    +  + A   Y+
Sbjct: 30  LDYTRDAYLTEFGKAVLEDRYLLEG-----ETYQAMFARVACAFA----DDLEHAKRLYD 80

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM STP L N G +     SCFL TV D+L GI     EN +LA   GG+G  W
Sbjct: 81  YISKLWFMPSTPILSNGGAKRGLPISCFLNTVTDNLDGIIKTWNENVLLASNGGGIGTYW 140

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR LG  +    G+S G+IPF++V +   +A++QG  R+G+   YL+  H ++EEF+D
Sbjct: 141 GDVRSLGESVGR-AGESSGIIPFIRVMDSQTLAISQGSLRRGSAAVYLDIHHPEIEEFVD 199

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +RK +GD  R++ +++    I D FM+ V  N  + L SP                    
Sbjct: 200 IRKPSGDFNRKSLNLHHGVNITDKFMQAVKHNKPFELLSPKT------------------ 241

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581
                     KV + + A  L++K+L    +TG P++ F D  N   P+        V  
Sbjct: 242 ---------KKVVKTVDARLLFQKILETRMQTGEPYLVFTDTVNKSLPKHQRELGLKVKM 292

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637
           SNLC+EI L +  +           L +       ++      I   +R LDNV    ID
Sbjct: 293 SNLCSEILLPTGIDHLGNERTAVCCLSSLNLEKWDEWHDHPLMIEDILRFLDNVLQTYID 352

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
                + +AK S    R++GLG+MGF S L   +IP+ S  A          I   A +A
Sbjct: 353 EAPEGMARAKYSATRERSVGLGVMGFHSFLQAKNIPFESAMAKSWNMRIFRTIRQKADAA 412

Query: 698 SVELAQERGAYSSFKG 713
           SV LA+E+GA    K 
Sbjct: 413 SVALAEEKGACPDAKE 428


>gi|169831430|ref|YP_001717412.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638274|gb|ACA59780.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 1121

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 134/359 (37%), Gaps = 48/359 (13%)

Query: 600 CNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           C LGS+NL             D++ L  T+R  +R LDN+ID+  + +E   ++    R 
Sbjct: 655 CLLGSVNLARMLKPGRDGYVVDWELLRDTVRLGIRFLDNLIDVAEYPLEFIAEATRATRK 714

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G    L  + +PY + E    A    + +   A++ S ELA ERG +  ++ S+
Sbjct: 715 VGLGYTGLHDLLIKMGLPYDAEEGRRFAGTVFKAVQDAALAYSRELAGERGCFPEWERSV 774

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           +                                          RN+ C+ +APT ++  I
Sbjct: 775 FHPHEK------------------------------------RRNAACITVAPTGSVTTI 798

Query: 776 CGVSQ-SIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
            G     I+P +   Y K   ++G F V +   +   ++  +  E M        G    
Sbjct: 799 AGCEGYGIEPIFAVAYTKDTDVAGSFEVFSPLFLEACERLGVSREVMSE--VARRGGCQG 856

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
           +E +P +L +I   A EI P   I   +  QK++  A S  + L    +   ++  YR A
Sbjct: 857 VEGVPPELARIFKGAQEISPRDHILMQAEVQKYVCNAVSKTINLPNSATIHDIETCYRLA 916

Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC-TSDTEC 950
           + +GLK     R      V   T+     K     +                   D+ C
Sbjct: 917 YELGLKGVTVFRDGCKQGVV--TVGRKKRKPVPGELARGEIMPRPENAQGVTHRLDSGC 973



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 117/300 (39%), Gaps = 40/300 (13%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSS 348
                G ++   RY      G   E  +    R+A   AL E   ++     +F   +  
Sbjct: 6   QLSDSGQKVFEARYAAKDEQGRVTETFEQAVHRLARTTALAEKAQDRAAWEEKFAASIGG 65

Query: 349 FHFMCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             F+ STP   N G      Q  +CF+  V D L  ++  L++ AM+ K  GG+G +++ 
Sbjct: 66  LLFVPSTPIWANIGKTDRPWQPGACFVLAVEDSLESMYQTLKDTAMVFKSGGGVGYNFSA 125

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G+ +  T G++ GV+  +++ + ++  V QGG R+GA    L   H ++  F++ +
Sbjct: 126 IRPRGSMVRSTKGQASGVVELIRLYDASSGMVMQGGVRRGASMGILNIDHPEIIHFINSK 185

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +            N +  + D FM+ + ++  W L    EV                   
Sbjct: 186 RGGD-----ITHFNLSVGVTDAFMEALERDEDWPLVFNGEVH------------------ 222

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                      + + A  LW  +       G P I F D    R        ++++N C 
Sbjct: 223 -----------QTVPARELWDLITESAHACGDPGIIFLDRL-QRDNPVPEKKINATNPCV 270


>gi|124027730|ref|YP_001013050.1| ribonucleotide reductase, alpha subunit [Hyperthermus butylicus DSM
           5456]
 gi|123978424|gb|ABM80705.1| predicted ribonucleotide reductase, alpha subunit [Hyperthermus
           butylicus DSM 5456]
          Length = 991

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 148/846 (17%), Positives = 258/846 (30%), Gaps = 234/846 (27%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           D  F Y  +++L  RY +    G  +E P     RVA G + +        V+ Y LL +
Sbjct: 67  DKGFTYNAIRVLLARYMVRNEYGVPMETPSMVMARVAWGFSTRVDP-----VKLYRLLIA 121

Query: 349 FHFMCSTPTLFNSGTR--HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
             FM ++PTLFN      +  LS+C++T V DD+  I  A    AM  K+ GG G  ++ 
Sbjct: 122 RKFMFNSPTLFNMYVDGAYGTLSACYVTPVYDDMKAIMDAATVQAMTFKWGGGQGFSFSE 181

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE------------T 454
           +R     +  T G++ G + F+++ +     V QGGKR+GA    +              
Sbjct: 182 LRPRWDIVRSTGGQASGPLSFMQIYDMVTETVKQGGKRRGANMGIMHAWHPDIYNPHFNP 241

Query: 455 WH-------IDVEEFLDLRKNTGDDRRRT------------------------------- 476
           WH         ++  +D  K   +   R                                
Sbjct: 242 WHALRNMLPPQLKALIDTTKRLIEHLEREGYEIDPVYKEIVMRLSEEGWETVEDAGFIQA 301

Query: 477 ----------HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE--------- 517
                      + N +    D FM+ + +   W + +P        +Y            
Sbjct: 302 KEPPLQDANLTNFNISVAANDAFMQAILRGEDWWMVNPRYSDSGDGVYRLHYSVSRATGL 361

Query: 518 ---------------------FEI-----------------AYENYERQADRGEIKVFRK 539
                                FE                   Y  +E   ++     ++ 
Sbjct: 362 GRLGELLERYPWLLENPYLNIFEDVLEEAKTKALEALKEQARYTGWETSPEQKNPYAWK- 420

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------- 592
             A  LW K++   + +G P + F D  N  +P   +G V+++N C E  L         
Sbjct: 421 YPARKLWEKIVENAWASGDPGLFFPDNHNKWNPTPWLGAVYATNPCGEQPLYPFESCNLG 480

Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDYDKLAS----TIRTAVRVLDNVIDIN 639
                      +      +  I L     +   D++K             R +   I   
Sbjct: 481 SMSIDKYISDGKFDLAQFMSDIQLAVDSMDAVIDFNKHPDPRQTVANKFTRKIGLGIMGL 540

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSA-LHLLHIPYASPEAVEIADESMEFISF------ 692
              + K      +  A+   L+   +  ++     +     +  A    E   +      
Sbjct: 541 ADALAKLGYPYDSEEAVAFTLIVMAALEVYSWKRSWELGAKLGHAPA-FECRRYDWKSMR 599

Query: 693 HAISASVELAQERGAYSSFKGSL------------WDQGVFPIDSIGLLA-EVRDELAMN 739
               A  E   E    +  K S             +     P D +  L  E +  +  N
Sbjct: 600 CVEKAEPEELVELHTPALLKASRISRVEDGWLKVCYHAVEIPEDMLERLVGEAKSRIEPN 659

Query: 740 RTSRLPWDELKKRV---------------------------------------------K 754
            T +L   E  ++V                                             K
Sbjct: 660 GTVKLVRWEAVEKVLREVFGVTREDYERALRSSPVIVVNSPKLLLALAVYNPEAAWKVLK 719

Query: 755 TIGM-------RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL- 806
             G        RN+    +APT TI+ I G S  I+P +  +Y +    G+F  V     
Sbjct: 720 AYGRSLGARAPRNTVMTTVAPTGTISIIAGTSSGIEPYFALVYRRVVAIGEFLEVVKPFR 779

Query: 807 VNELKQRDLWD------EAMISDLKYHDGSIG-----------------NIERIPDDLKK 843
              L+    ++      + +   +  H GS+                        + L +
Sbjct: 780 EKLLEAARRYNVPLDAVKVVYETIGRHKGSLRWALGEVREKLIQMGIMNGFLAEVEKLAR 839

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
           +   + + D  + +      Q ++DQA S  + L  + +  ++   Y  AWL GLK    
Sbjct: 840 LFTMSMDFDLWYHLAHQIAAQLYVDQAISKTINLRKDATKDEVYTAYLVAWLGGLKGVTV 899

Query: 903 LRSRSA 908
            R  S 
Sbjct: 900 YRDESK 905


>gi|49184286|ref|YP_027538.1| ribonucleoside-diphosphate reductase subunit alpha, group I
           intron-containing [Bacillus anthracis str. Sterne]
 gi|49178213|gb|AAT53589.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. Sterne]
          Length = 440

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 106/469 (22%), Positives = 198/469 (42%), Gaps = 57/469 (12%)

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I    
Sbjct: 2   TKKINVDEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDIDEMY 61

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  SNL
Sbjct: 62  DELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSNL 121

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           CTEI     + E               CNLGS+N++    N      ++   +   +  L
Sbjct: 122 CTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGMEAL 176

Query: 633 DNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+         KK+N    ++GLG M     L    I Y S EA E A      ++
Sbjct: 177 TAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMMLN 236

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           +++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  ++ 
Sbjct: 237 YYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTKE 296

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +        
Sbjct: 297 DWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYYPMP 356

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L  +      W                            + ++++++   LI+  +  Q
Sbjct: 357 YLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIAEIQ 385

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           + IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 386 EHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 434


>gi|49477195|ref|YP_035576.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65318722|ref|ZP_00391681.1| COG0209: Ribonucleotide reductase, alpha subunit [Bacillus
           anthracis str. A2012]
 gi|165870442|ref|ZP_02215097.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0488]
 gi|167634290|ref|ZP_02392611.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0442]
 gi|167639300|ref|ZP_02397572.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0193]
 gi|170686704|ref|ZP_02877924.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0465]
 gi|170706204|ref|ZP_02896665.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0389]
 gi|177651433|ref|ZP_02934222.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0174]
 gi|190568016|ref|ZP_03020926.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis Tsiankovskii-I]
 gi|196035391|ref|ZP_03102796.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus W]
 gi|218902560|ref|YP_002450394.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus AH820]
 gi|227815799|ref|YP_002815808.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. CDC 684]
 gi|228926483|ref|ZP_04089555.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228932734|ref|ZP_04095606.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229120992|ref|ZP_04250234.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|229604865|ref|YP_002865866.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0248]
 gi|254682484|ref|ZP_05146345.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726147|ref|ZP_05187929.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. A1055]
 gi|254733900|ref|ZP_05191614.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740410|ref|ZP_05198101.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Kruger B]
 gi|254753801|ref|ZP_05205836.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Vollum]
 gi|254758896|ref|ZP_05210923.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Australia 94]
 gi|49328751|gb|AAT59397.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164713937|gb|EDR19459.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0488]
 gi|167512739|gb|EDR88113.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0193]
 gi|167530178|gb|EDR92904.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0442]
 gi|170128738|gb|EDS97604.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0389]
 gi|170669227|gb|EDT19970.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0465]
 gi|172082711|gb|EDT67774.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0174]
 gi|190560750|gb|EDV14725.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis Tsiankovskii-I]
 gi|195992068|gb|EDX56031.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus W]
 gi|218536400|gb|ACK88798.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus cereus AH820]
 gi|227004906|gb|ACP14649.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. CDC 684]
 gi|228662652|gb|EEL18250.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|228826939|gb|EEM72701.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228833307|gb|EEM78872.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229269273|gb|ACQ50910.1| ribonucleoside-diphosphate reductase, alpha subunit, group I
           intron-containing [Bacillus anthracis str. A0248]
          Length = 440

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 106/469 (22%), Positives = 198/469 (42%), Gaps = 57/469 (12%)

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I    
Sbjct: 2   TKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDIDEMY 61

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  SNL
Sbjct: 62  DELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSNL 121

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           CTEI     + E               CNLGS+N++    N      ++   +   +  L
Sbjct: 122 CTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGMEAL 176

Query: 633 DNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+         KK+N    ++GLG M     L    I Y S EA E A      ++
Sbjct: 177 TAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMMLN 236

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           +++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  ++ 
Sbjct: 237 YYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTKE 296

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +        
Sbjct: 297 DWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYYPMP 356

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L  +      W                            + ++++++   LI+  +  Q
Sbjct: 357 YLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIAEIQ 385

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           + IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 386 EHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 434


>gi|46200232|ref|YP_005899.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
            thermophilus HB27]
 gi|46197860|gb|AAS82272.1| ribonucleoside-diphosphate reductase alpha chain [Thermus
            thermophilus HB27]
          Length = 1800

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 145/362 (40%), Gaps = 50/362 (13%)

Query: 598  AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
              C+LG++NL A+  + +F  ++    +RTA+R LDNV+D+N   +   + +  + R +G
Sbjct: 1302 EPCDLGAMNLAAYVKDGEFQMEEFRRDVRTAIRFLDNVLDVNKFALPDNEMAAKSLRRLG 1361

Query: 658  LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
            LGLMG   AL  + +PY S EA     E +  +   AI AS  LA+ERG +  ++     
Sbjct: 1362 LGLMGLADALIKMGLPYDSEEARRKVYEIVSVMREEAIRASEALAEERGPFPLYEE---- 1417

Query: 718  QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                     R  +  L  R +     N   + +APT T + + G
Sbjct: 1418 ------------------------HREYFQSLGIRPRR----NVALLTVAPTGTTSMLMG 1449

Query: 778  VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK---------QRDLWD-EAMISDL-KY 826
            VS  I+P +     +        +++   V  ++         +   WD E +I ++ K 
Sbjct: 1450 VSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMEAYPPAPGYAKDGKWDWEKIIEEIQKD 1509

Query: 827  HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID------QAQSLNLYLDE- 879
              GS+ N+  +P+ ++K+   A ++ P+  +      Q+  D       + S  + L   
Sbjct: 1510 GHGSVQNLPFVPEAIRKVFLCAHDVHPLDHVRMQGAVQRAFDAEGYAANSISKTINLPNH 1569

Query: 880  PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
             + + ++  Y +A+  G K     R  S      +  K    +       +         
Sbjct: 1570 AAVEDVEAAYTEAYRTGCKGITVYRDGSREFQVLTVKKEAKEEKAGKTPEEAKPQEARAH 1629

Query: 940  IP 941
             P
Sbjct: 1630 EP 1631



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 18/210 (8%)

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV-----ANDTAVAVNQGGKRKG 446
           M+ + +  LG +  P      ++   + +  G I  L +         A  +     R+G
Sbjct: 681 MVLEKAQDLGLEAEPFPFNEYYVRVASVEPGGEILTLDLSVEGNHTYLANGLVSHNTRRG 740

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           A  A L   H D+ +FL  +    +         N +    D F++ V ++  W +  P 
Sbjct: 741 AGMATLSIEHPDLLDFLTAKDLDREKAEGDISTFNISVLATDRFLEAVEKDELWPVT-PI 799

Query: 506 EVSDLHDLYGKEFEIAYE------NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           EV   +  Y    E  Y              +       K+ A  LW ++    + TG P
Sbjct: 800 EVPGKY--YPYPVEGPYTGKLPSLPEREDGAKAIPLYGGKVPARWLWHEIAWHAWATGEP 857

Query: 560 WITFKDPCNIRSPQQHVG---VVHSSNLCT 586
            + F D  N  S  + +G    + S+N C 
Sbjct: 858 GLIFVDRVNALSALKGLGERYQIRSTNPCF 887



 Score = 46.0 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 67/182 (36%), Gaps = 39/182 (21%)

Query: 289 RD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNL 345
           RD + F+     I   +Y    +G  +      F RVA  +A  E E+E+   E  F+ L
Sbjct: 2   RDGYFFDEHAQAIARRQYLQPGDGDIL----GMFRRVAREIAKAEREEERSKWEEEFFRL 57

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLT----TVPDDLYGIFGALQENAMLAKYSGGLG 401
           ++   F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 58  MAEKRFSPGGRILAGAGTVHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNG 117

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +  P R  G                                R     AYL   H DVE+
Sbjct: 118 VNLDPYRSKGKRAR----------------------------RAVEGVAYLSAEHPDVED 149

Query: 462 FL 463
           F+
Sbjct: 150 FI 151


>gi|119485473|ref|ZP_01619801.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
 gi|119457229|gb|EAW38355.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
          Length = 405

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 185/434 (42%), Gaps = 65/434 (14%)

Query: 490 MKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
           M+RV     WTL  P EV      +L +L+G++FE AY+  E+  D+  + +++KI+A  
Sbjct: 1   MRRVIAKEEWTLVDPFEVRTKLGIELAELWGEKFEFAYQEIEQSLDKT-LTLYKKINARE 59

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           L++ M+    ETG P++ FKD  N  +P  H G +   NLC E   N +  +        
Sbjct: 60  LFKTMMRSQVETGMPYLWFKDTSNRANPNSHEGYIPGGNLCQESWSNVAPGKE-----AH 114

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
              L        +  +LA     AVR+LDN I++ C   E +K  N  +R IG+G MG  
Sbjct: 115 TCNLNSLNLANLEDGELAEICEIAVRLLDNTIELTCPPFEDSKVHNIKYRTIGVGAMGLA 174

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y   + +       E + ++    S+ELA+ERG+Y +F GS W QG     
Sbjct: 175 DWLAKNKRSYRDLDTI---SHLFEDLGYYCTKTSMELAKERGSYPAFAGSSWSQGKL--- 228

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
              + A+  +    N  S+  W +L   ++  G+RNS+  AIAP  + + + G + SI P
Sbjct: 229 ---IGAKPVEWFLENAHSKERWQQLSLDIQKYGIRNSHITAIAPNTSSSLVQGCTASILP 285

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
            Y   +      G    +    + +      W                     P++    
Sbjct: 286 CYSRFFYDKWAKGTVP-IAPPFIRD----SFW-------------------FYPEN---- 317

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSL----NLY----LDE-----PSGKKLDFIYRQ 891
             T   ++   ++++ +  QKWID   S+    NL       +        K +      
Sbjct: 318 -KT---LNQQTVVKAVATIQKWIDTGISMELIFNLNQGVYFPDEPERSIKAKDIFDTLVM 373

Query: 892 AWLMGLKTTYYLRS 905
           AW  G K  YY+R+
Sbjct: 374 AWQEGCKAIYYIRT 387


>gi|259418707|ref|ZP_05742624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter sp. TrichCH4B]
 gi|259344929|gb|EEW56783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Silicibacter sp. TrichCH4B]
          Length = 1055

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 117/577 (20%), Positives = 201/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T  NS   HPQ  +CF+ +V D      GI       A L KY  G G +
Sbjct: 78  HYVDYKTGKLTKSNSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTN 137

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 138 FSHLRAEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 196

Query: 463 LDLR------------------------------KNTGDDRRRTHDMNTANW-------- 484
           ++ +                               +   +       NTA          
Sbjct: 197 IEWKVLEEQKVASIVAGSKMHEKMLNGIFEALRTWDGLSEDAYDPAENTALKSAIREAKK 256

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+ +    
Sbjct: 257 VAIPETYIKRVLDYARQGYDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEK 316

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + KV + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 317 DSDWELINRTDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGS 376

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  +    F  +      R     L+  + +    
Sbjct: 377 NPCSEYMF----LDDTACNLASLNLLTFYQGGVFQAEDFMHASRLWTLTLEISVMMAQFP 432

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 433 SKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSDEGRALCGSLTAIMTGVAYATSAEIA 492

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E G ++ ++ +         +                     L  +   +  +   +  
Sbjct: 493 SELGPFAGYERNADHMLRVMRNHRNAAYGATEGYDALTVKPVPLDLQNCPDARLTELAMS 552

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 553 AWDEAVNLGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 612

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  + + L+        +   + Y    GSIGN   I
Sbjct: 613 NRSVPSALEGLGYSSAQIEEIVSYAVGHGSIGNAPGI 649



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 47/151 (31%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + ++   I   A          + 
Sbjct: 703 NDTAFDLLRHLGFTKADIDAANDHVCGTMTLEGAPHLKEEHYSIFDCANPCGKKGKRYLG 762

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I+  +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  S 
Sbjct: 763 VDSHIKIMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 822

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D    A  +   +    ++ +  
Sbjct: 823 PLAAALVEDDDEAAEILETGSVPEKAVTLAE 853


>gi|228957725|ref|ZP_04119469.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229108908|ref|ZP_04238512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228674564|gb|EEL29804.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228801968|gb|EEM48841.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 440

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 106/469 (22%), Positives = 197/469 (42%), Gaps = 57/469 (12%)

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I    
Sbjct: 2   TKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDIDEMY 61

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  SNL
Sbjct: 62  DELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSNL 121

Query: 585 CTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
           CTEI     + E               CNLGS+N++    N      ++   +   +  L
Sbjct: 122 CTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGMEAL 176

Query: 633 DNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
             V D+         KK+N    ++GLG M     L    I Y S EA E A      ++
Sbjct: 177 TAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFMMLN 236

Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744
           +++I  S+E+A E+   +  F  S +  G +       D   +  +V+     ++  ++ 
Sbjct: 237 YYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIPTKE 296

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
            W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +        
Sbjct: 297 DWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYYPMP 356

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
           +L  +      W                            + ++++++   LI+  +  Q
Sbjct: 357 YLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIAEIQ 385

Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           + IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 386 EHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 434


>gi|260892347|ref|YP_003238444.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ammonifex degensii KC4]
 gi|260864488|gb|ACX51594.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ammonifex degensii KC4]
          Length = 955

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 147/318 (46%), Gaps = 42/318 (13%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNLGSINLL       F ++KL   +  AVR LD+VI++N   +     +    R +
Sbjct: 657 YESCNLGSINLLNMVDGAGFSWEKLREVVHLAVRFLDDVIEVNNFPVPAIAAATRRTRKV 716

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG+MG+  AL  L IPY S  A+ +  E M FI   A +AS +LA+ERG + +++ S++
Sbjct: 717 GLGVMGWADALFKLGIPYDSEAALGLGAEVMRFIREEARAASRQLAEERGTFPAWEDSVY 776

Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
              +                                     +RN+    IAPT +I+ I 
Sbjct: 777 YPHLP------------------------------------LRNATLTTIAPTGSISAIA 800

Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL---WDEAMISDLKY--HDGSI 831
           GVS  I+P +   Y +  + G   +V   +  E  +++      E +++ +    + G  
Sbjct: 801 GVSPGIEPVFALAYTRMVLDGKKLLVVDKVFQEYVEQNFPPSRREEIMAGVSRTGNLGLC 860

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890
                +P+D++++  TA EI P W +   +  Q++ D A S  + L  + S +++  I+ 
Sbjct: 861 AEELDLPEDMRRLFKTALEIAPEWHLRHQATFQQYTDNAVSKTINLPSDSSPEEVGQIFW 920

Query: 891 QAWLMGLKTTYYLRSRSA 908
           +A+ + +K     R+ S 
Sbjct: 921 KAFELKVKGLTVYRTGSR 938



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 41/304 (13%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEF 342
              +     IL  RY      G+ +E P+  F RVA  +A  E          E+ A  F
Sbjct: 18  LKLDANSRIILEGRYLKRDEAGNVVETPEEMFWRVARAVAEAEARFGASAQEVEEWARRF 77

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
           + L++S  F+ ++PTL N+G    QL++CF+  + D +  IF  L+  A++ K  GG G 
Sbjct: 78  FELMASLDFLPNSPTLINAGRELGQLAACFVLPIEDSIESIFETLKYAALIHKSGGGTGF 137

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           D++ +R  G  +  T G + G + F+++ N     + QGG R+GA    L   H D+ EF
Sbjct: 138 DFSRLRPKGDPVRSTGGVASGPVSFMRIFNAATEEIKQGGVRRGANMGILRADHPDIMEF 197

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           +  +    ++     + N +  + D F + + ++  W L                     
Sbjct: 198 VACK----EEEGAFRNFNISVAVTDAFFETLARSGEWELVF------------------- 234

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                       KV+R++ A  L+  ++      G P + F D  N  +P   +G + ++
Sbjct: 235 ----------RGKVYRRLPARELFDWIVQHAHANGEPGLLFLDAINRANPTPALGRIEAT 284

Query: 583 NLCT 586
           N C 
Sbjct: 285 NPCV 288


>gi|313903475|ref|ZP_07836866.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466296|gb|EFR61819.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermaerobacter subterraneus DSM 13965]
          Length = 1272

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 140/354 (39%), Gaps = 45/354 (12%)

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT-HRA 655
             VCNLG+INL A     + D + L  T+  AVR LDNVID   +   + +K+     R 
Sbjct: 685 WGVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATEYFFPENEKAQRYGVRR 744

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG MG    L  L + Y S +A E+ D+    I   A   S  LAQE+G +  F    
Sbjct: 745 IGLGTMGLADMLIKLGVRYGSEKAFEVCDQVYRLIRDEAYRVSALLAQEKGPFPLFDREK 804

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + QG F                     +   +++++ +   G+RN   +  APT T + +
Sbjct: 805 YLQGWF--------------------IQRLPEDIRQLIAQHGIRNGFLLTQAPTGTTSLL 844

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            GVS  I+P +   + +++ +G   V +      L++                       
Sbjct: 845 AGVSSGIEPVFAFSFKRTDRTGTHIVYHELYKEWLEKHP--------------------- 883

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWL 894
              + +     +A ++ P   +   +  Q+++D + S  +    E +  ++  +YR A+ 
Sbjct: 884 --DEPVPDYFVSADQLTPEEHVRMQAVIQQYVDASISKTVNAPREHTVDQVRTLYRLAYE 941

Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
           +G K   Y R  S   V      G  G+          ++    G  +    + 
Sbjct: 942 LGCKGITYYRDGSREGVLHKLDDGEKGRQGKGAAQGAAAAGAGAGPDTGGAGEP 995



 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 39/292 (13%)

Query: 301 LYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356
             DRY     +G  +E  P+  + RVA  +A  E    +E     F   L  F F+    
Sbjct: 11  FLDRYARKGPDGKPVESSPEEMWDRVARAIAEVEEPDRREVWERRFRQALDGFKFVPGGR 70

Query: 357 TLFNSGTRHP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
            L  +GT +     +C++   P D   GI   +     +    GG+G + + +R  G ++
Sbjct: 71  ILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGTYV 130

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474
            G NG + G + + +V +    +V QGG R+GA+   L+  H D+EEF+ +++    D  
Sbjct: 131 KGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----DLT 186

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534
           +  + N +  I D FM+ V Q+  W L                                 
Sbjct: 187 KITNANLSVCISDAFMEAVQQDLPWDLKW-----------------------------NG 217

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           KV++ + A  LW  +    + +G P + F +  N RS   +   ++  N C 
Sbjct: 218 KVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPCF 269


>gi|294676999|ref|YP_003577614.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus
           SB 1003]
 gi|294475819|gb|ADE85207.1| ribonucleoside-diphosphate reductase NrdJ-2
           (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB
           1003]
          Length = 1224

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 118/577 (20%), Positives = 201/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 175 YYVDYATGVLTKSASAYEHPQPHACFIQSVRDDLVGEGGIMDLWVREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H D+EEF
Sbjct: 235 FSSLRAEGERLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEEF 293

Query: 463 LDLRKNTG------------------------------DDRRRTHDMNTA---------- 482
           ++ +                                  D+ R    +N A          
Sbjct: 294 INWKVIEEQKVASLVAGSKMHERELNKIFEAIRAFDGSDEGRTDPAVNVALKAAIRSAKK 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             IP+ ++ RV Q              +  W   +   VS  +         A+    + 
Sbjct: 354 AMIPETYINRVLQYARQGFSSIEFPTYDTDWDSDAYISVSGQNSNNSVRVTDAFLKAVKD 413

Query: 529 ADRGE------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               E        V + + A  LW ++    +    P I F D  N        G +  S
Sbjct: 414 DANWELLRRTDGSVAKVVKARDLWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRGS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  +   +FD +      R     L+  + +    
Sbjct: 474 NPCSEYMF----LDDTACNLASLNLLTFYTGGEFDAEAYVHATRLWTMTLEISVLMAQFP 529

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  + + Y S E   +       ++  + + S E+A
Sbjct: 530 SKEIAQRSYDFRTLGLGYANIGGLLMTMGLGYDSDEGRALCGALSAIMTGISYATSAEMA 589

Query: 703 QERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRL 744
            E G +  +  +         +                     L      +  + R +R+
Sbjct: 590 AELGPFPGYAKNRAHMLRVIRNHRTAAHGKSKGYEGLEVPPVPLDLANCPDDRLLRLARM 649

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 650 AWDEALRLGEEHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 709

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L+        +   + Y    GS+GN   I
Sbjct: 710 NRSVPAALETLGYGSAQIAEIIAYAVGHGSLGNCPGI 746



 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 37/122 (30%), Gaps = 9/122 (7%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
           ++     +  +   +   A          +     I   +  Q +I  A S  + +    
Sbjct: 829 TLEGAPFLRPEHYVVFDCANTCGKRGKRYLSVESHIRMMAAAQSFISGAISKTINMANTA 888

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + + +   Y  +W +G+K     R  S  S   ++    D +     +   +    +  +
Sbjct: 889 TIEDVKAAYELSWSLGIKANALYRDGSKLSQPLASALVEDDEEAEEILATGSQQEKAAVL 948

Query: 941 PS 942
             
Sbjct: 949 AE 950


>gi|15807364|ref|NP_296095.1| ribonucleoside-diphosphate reductase-like protein [Deinococcus
            radiodurans R1]
 gi|6460188|gb|AAF11919.1|AE002068_2 ribonucleoside-diphosphate reductase-related protein [Deinococcus
            radiodurans R1]
          Length = 1418

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 140/364 (38%), Gaps = 54/364 (14%)

Query: 598  AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
              C+LG+INL A+   + FD+    + +RT VR LD+V+D+N   +E  + ++   R +G
Sbjct: 900  EPCDLGAINLAAYVRGSDFDFAAFRADVRTCVRFLDDVLDVNVFALEDNRVASQDLRRLG 959

Query: 658  LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
            LG+MG   AL  + + Y +    +   + M  +   A++ S  L QERG Y  ++ +   
Sbjct: 960  LGVMGLADALIKMGLRYDNESGRQAIYDIMSALREEAVAESERLGQERGFYPVYERNREQ 1019

Query: 718  QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                P                                    RN   + +APT T + + G
Sbjct: 1020 VPHDP-----------------------------------RRNVAVLTVAPTGTTSMLMG 1044

Query: 778  VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK---------QRDLWD-EAMISDLKYH 827
            VS  I+P +     +   S    ++    V  L+         +   WD + +   +  +
Sbjct: 1045 VSSGIEPVFSPFIWRKIGSEYRALLAPLFVELLESYPAPKGMEKDGGWDWDKVTEAVSEN 1104

Query: 828  DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID-------QAQSLNLYLDE- 879
             GS+  +  IPD L+++   A +I P+  +      Q+  D        + S  + L   
Sbjct: 1105 HGSVVGLSFIPDALQQVFVCAHDISPVDHVRMQGTVQRAFDDGGQLAANSLSKTINLPNS 1164

Query: 880  PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
             S   +   Y +A+  G K     R  S      ST K    K       +P + +    
Sbjct: 1165 ASVDDVKSAYEEAYRTGCKGITVYRDGSRQFQVLSTSKK-KAKTEERGSAEPLADSKPAE 1223

Query: 940  IPSS 943
             P+ 
Sbjct: 1224 APAV 1227



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 89/237 (37%), Gaps = 32/237 (13%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF-LKVA 431
           +T V DD+ GI  A ++ A +AK +     D + +R  GA I G+ G S G + F +++ 
Sbjct: 280 VTAVADDMGGIIDAARQVAEIAKLNIEPRIDLSAMRPEGAPIKGSGGTSSGPVSFLMEIF 339

Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467
           ++     N                        QGG R+GA  A +   H DV +FL  + 
Sbjct: 340 DNFIEWANRGAEDSGPINTLRYVYAPVLRVVRQGGTRRGAGMATISIGHPDVLDFLTAKD 399

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              +         N +  +   F   +  +  W      +V   +    +E E A    E
Sbjct: 400 LDREAAEGDISTFNISILVDTKFWDTLQADGVW-TIDAQDVPGKYFPVPQEGEYAGTFPE 458

Query: 527 -----RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                    +G       I A  LW ++    + TG P + F D  N  S  +++G 
Sbjct: 459 LPTRAEDGAKGVPVYGSGIPARWLWDQIAQHAWSTGEPGLIFNDRVNEYSALKNLGE 515



 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 36/179 (20%)

Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSF 349
            F+     I   +Y    +G         F R+A  +A  E    ++  A ++Y+L++  
Sbjct: 79  HFDENAQHIAKRQYLQGNDGDIS----GMFWRIADWVAGAEAPEARQGWAQQYYDLMAEK 134

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDD----LYGIFGALQENAMLAKYSGGLGNDWT 405
            F      L  +GT+H  + +CF+    +       G+    ++ A++ K  GG G +  
Sbjct: 135 KFCPGGRVLAGAGTQHGNVLNCFVQGATEHDPSSFEGVMEVAKKLALVTKVGGGNGVNLD 194

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             R         NG    V                          Y+   H DV++F++
Sbjct: 195 VYRPRAQSSRSDNGVRGWV--------------------------YMSAEHADVQDFIE 227


>gi|159044334|ref|YP_001533128.1| ribonucleotide-diphosphate reductase subunit alpha [Dinoroseobacter
           shibae DFL 12]
 gi|157912094|gb|ABV93527.1| vitamin B12-dependent ribonucleotide reductase [Dinoroseobacter
           shibae DFL 12]
          Length = 1224

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 116/619 (18%), Positives = 208/619 (33%), Gaps = 111/619 (17%)

Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTR 364
              + +A  +A   +       +++N    + +    P   +              S   
Sbjct: 139 EMQLMLARQMAAPNSP------QWFNTGLHWAYGIDGPAQGHYYVDHKSGKLTKSTSSYE 192

Query: 365 HPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +R  G  + G  GKS
Sbjct: 193 HPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGTNFSSLRAEGEALSG-GGKS 251

Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR------ 474
            G++ FLK+ +  A A+  G   R+ A     +  H D+EEF++ +              
Sbjct: 252 SGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEFVNWKVKEEQKVASLVAGS 311

Query: 475 RTHDMNTA----------------------------------NWIPDLFMKRVTQ----- 495
           + H+                                        IP+ ++KRV       
Sbjct: 312 KMHEAKLNEIFAAIGEWDGLGEDAVDPTKNAALKSAIRAAKKVQIPETYIKRVLDYAKQG 371

Query: 496 ---------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKI 540
                    +  W   + + VS  +         A+              R + KV + I
Sbjct: 372 YASIEFPTYDTDWDSEAYNSVSGQNSNNSVRVTDAFLKAVKDDADWELIRRTDGKVAKTI 431

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
            A  LW  +    +    P I F D  N        G +  SN C+E        +   C
Sbjct: 432 KARELWETIGHAAWACADPGIQFHDTVNDWHTCPEDGAIRGSNPCSEYMF----LDDTAC 487

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NL S+NLL  + + +FD +      R     L+  + +     ++  + ++  R +GLG 
Sbjct: 488 NLASMNLLTFYRDGKFDSEGYMHAARLWTLTLEISVLMAQFPSKEIAQRSYDFRTLGLGY 547

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
                 L  +   Y S E   +       ++  + + S E+A E G +  +  +      
Sbjct: 548 ANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVSYATSAEIAAEVGPFPGYAKNADHMLR 607

Query: 721 FPIDSIG------------------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
              +                     L      +  + + +   WDE  K  +  G RN+ 
Sbjct: 608 VIRNHRNAAYGKTDGYEALATKPVALDHANCPDQTLVKLAMSSWDEALKLGEQHGYRNAQ 667

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              IAPT TI  +    +  I+P +  + + K    G F ++N  +   L         +
Sbjct: 668 ATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALDTLGYSSAQI 727

Query: 821 ISDLKYH--DGSIGNIERI 837
              + Y    G++GN   +
Sbjct: 728 EEIIAYAVGHGTLGNAPGV 746



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLW--DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE--------ID 852
           N    + L+       D  + +D      ++     +  +   +   A          + 
Sbjct: 800 NDPTFDMLRHLGFAKKDIDLANDHVCGTMTLEGAPFLKAEHYSVFDCANPCGKRGKRFLS 859

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G K     R  S  S 
Sbjct: 860 VDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGTKANALYRDGSKLSQ 919

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D +  A  +   ++   +  I  
Sbjct: 920 PLAAALVEDDEEAAEVLETGSTMEKAQVIAE 950


>gi|288926569|ref|ZP_06420486.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
 gi|288336646|gb|EFC75015.1| ribonucleoside-diphosphate reductase [Prevotella buccae D17]
          Length = 646

 Score =  212 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 169/468 (36%), Gaps = 77/468 (16%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
           KV ++ISA ALW K++   +++  P + F D     S       +    + T        
Sbjct: 36  KVKKEISAKALWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFRTVSTNPCGEIPL 95

Query: 595 EETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDIN---------- 639
                C L SINL ++  +       FD DK     + A R++D+++D+           
Sbjct: 96  CPYDSCRLISINLYSYVEHPFTPDAHFDMDKFKQHAQLAQRLMDDIVDLEMEKIELIMEK 155

Query: 640 --------------CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                          H  EK K  +   R  G+G+      L  + + Y + EA + + E
Sbjct: 156 IKADPQSEEVKGAEYHLWEKIKHKSSLGRRTGVGITAEGDMLAAMGLRYGTQEATDFSVE 215

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
             + ++ +A ++SV++A+ERGA+  F                   E  +   +    +  
Sbjct: 216 VHKTLALNAYASSVQMAKERGAFEIFDAKR---------------EEHNPFILR--LKDA 258

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS--------- 796
             +L   +   G RN  C+ IAPT T + +   +  I+P +  +Y +             
Sbjct: 259 DPQLYDDMVKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPNDTDVHV 318

Query: 797 ----------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
                      ++ V +   +  ++   L  E   +           I+ +        A
Sbjct: 319 DFVDEVGDSFEEYIVYHRKFLTWMQANGLDTEKRYTQ--------EEIDALVSRSPYYKA 370

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA ++D +  ++     QKW+D + S+ + L ++     ++ +Y +AW  G K     R 
Sbjct: 371 TANDVDWLMKVKMQGAIQKWVDHSISVTVNLPNDVDEALVNRLYVEAWKSGCKGCTIYRD 430

Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            S + V  S  K    K        P +       P       +   C
Sbjct: 431 GSRSGVMISVSKKDKKK---EASAAPVAEAVPCKHPQVTEVRPQTLEC 475


>gi|331668938|ref|ZP_08369786.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
 gi|331064132|gb|EGI36043.1| ribonucleoside-diphosphate reductase 1 subunit alpha
           (Ribonucleoside-diphosphate reductase 1 R1 subunit)
           (Ribonucleotidereductase 1) (B1 protein) [Escherichia
           coli TA271]
          Length = 412

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 99/411 (24%), Positives = 161/411 (39%), Gaps = 52/411 (12%)

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
            D      +EFE  Y  YE+     +    +++ AV L+  M+     TG  +I   D C
Sbjct: 16  YDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERASTGRIYIQNVDHC 71

Query: 568 NIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQFDYDKLAS 623
           N  SP       V  SNLC EI L +          G I L              D+L  
Sbjct: 72  NTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEE 131

Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
               AVR LD ++D   + I  AK+     R +G+G++ F   L      Y+   A  + 
Sbjct: 132 LAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLT 191

Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
            ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+     +       N    
Sbjct: 192 HKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIA----NEPLH 247

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803
             W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K++  G    V 
Sbjct: 248 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVV 307

Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-LIESASR 862
                                              + L   +   +E+      ++    
Sbjct: 308 PDY--------------------------------EHLHDAYELLWEMPGNDGYLQLVGI 335

Query: 863 RQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            QK+IDQ+ S N   D       +   ++L      A+  G+KT YY  +R
Sbjct: 336 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTR 386


>gi|149913748|ref|ZP_01902280.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. AzwK-3b]
 gi|149812032|gb|EDM71863.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. AzwK-3b]
          Length = 1008

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 204/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T  +S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 168 YYVDYQTGELTKSSSAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H D+EEF
Sbjct: 228 FSSLRAAGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEF 286

Query: 463 LDLRKNTGDDRR------RTHDMNT----------------------------------A 482
           ++ +              + H+                                      
Sbjct: 287 INWKVREEQKVASIVAGSKMHEQKLNEIFTAIREWDGSSEDAVDPKKNPSLKAAIRSAKQ 346

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKE----FEIAYEN 524
             IP+ ++KRV                +  W   +   VS  +          F  A   
Sbjct: 347 VQIPETYVKRVLDYAKQGYVSIEFPTYDTDWDSEAYASVSGQNSNNSIRVTDAFLEAVRK 406

Query: 525 YERQA--DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            E  A  +R +  V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 407 DEDWALINRTDGGVAKTIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  F N  FD +      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASMNLLQFFHNGAFDAESYVHATRLWTVTLEISVMMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  + + Y S E   +       ++  + + S E+A
Sbjct: 523 SKEIAQLSYEFRTLGLGYANIGGLLMNMGLGYDSDEGRAMCGALTALMTGVSYATSAEMA 582

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA++ ++ +         +                     L  +   +  +   +  
Sbjct: 583 GELGAFAGYERNREHMLRVIRNHRNAAYGNSDGYEALAIKPLPLDQKNCPDARLVDLAMA 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 SWDEALRLGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    G+IGN   I
Sbjct: 703 NHSVPAALEKLGYGSAQIEEIVSYAVGHGTIGNAPGI 739



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 822 TLEGAPHLKEEHLTVFDCANPCGKKGKRYLSVDSHIYMMAAAQSFISGAISKTINMPNDA 881

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + +     Y  +W +G+K     R  S  S   +     D +  A  + + ++   +  +
Sbjct: 882 TIEDCQKAYELSWSLGVKANALYRDGSKLSQPLAASLVEDDEDAAEILENGSAQEKAAVL 941

Query: 941 PS 942
             
Sbjct: 942 AE 943


>gi|83311845|ref|YP_422109.1| ribonucleotide-diphosphate reductase subunit alpha
           [Magnetospirillum magneticum AMB-1]
 gi|82946686|dbj|BAE51550.1| Ribonucleotide reductase [Magnetospirillum magneticum AMB-1]
          Length = 1245

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 142/767 (18%), Positives = 258/767 (33%), Gaps = 126/767 (16%)

Query: 190 YDGL----SESDL---ETALIFSSRTLIEKEPNYAKVTARFLLE-KLRREVLTTVYKKPQ 241
           YDG+    + S++   + +++FS+   IE   ++++V    L +   R+  +    K+  
Sbjct: 37  YDGIQFRKATSEIRNPDGSVVFSAAD-IEVPADWSQVACDVLAQKYFRKAGVPAKLKRVA 95

Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301
           +    +  C +        +   K R++ E         LA          + Y G +  
Sbjct: 96  EKGVPDWLCRHEPDSEALSKLPEKERIVGEKSAKQVFDRLAG--------TWTYWGWK-- 145

Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL---------SSFHFM 352
              YF   + +     +   M             +      +            S   F 
Sbjct: 146 -GGYFNAEDDALAFRDEMACML--ARQMGAPNSPQWFNTGLHWAYGIDGPGQGHSYVDFK 202

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409
                   S   HPQ  +CF+ ++ D   +  GI       A L KY  G G +++ +RG
Sbjct: 203 TGKLVRSKSAYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSRLRG 262

Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468
            G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F+  +  
Sbjct: 263 EGEKLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEKFISWKVR 321

Query: 469 TGDDRR----------RTHDMNTANW-------------------------------IPD 487
                           R      A                                 IP+
Sbjct: 322 EEQKVAALVAGSRLAARHLTEVMAACREWDGQDGEARFDPKINTRLKKAIIAGRKSEIPE 381

Query: 488 LFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEI------AYENYER 527
            +++RV Q              +  W   +   VS  +       +        ++    
Sbjct: 382 NYIQRVIQFARQGYTQIDFPVLDTDWDSEAYLTVSGQNSNNSVRVDNGFLNAVLHDADWN 441

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
              R   K  + + A  LW ++    +    P I F    N        G +++SN C+E
Sbjct: 442 LKHRNSAKAAKTLKARDLWEQIGEAAWACADPGIQFDTTINEWHTCPESGRINASNPCSE 501

Query: 588 ITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
                   +   CNL S+NLL     +  FD D      R    VL+  + +      K 
Sbjct: 502 YMF----LDDTACNLASLNLLCFRNEDGSFDVDGFRHACRLWTMVLEISVLMAQFPSPKI 557

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++  R +GLG       L    IPY S +   +       ++  A + S ++A+E G
Sbjct: 558 AELSYEFRTLGLGYANVGGLLMASGIPYDSDKGRALTGAITALMTGEAYATSADMAEELG 617

Query: 707 AYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDE 748
           A+  F+ +         +                     L A    +  +   SR  WDE
Sbjct: 618 AFEGFEKNRAAMMRVIRNHRRAAHGMGTGFEGLSVTPVPLDAANCPDAPLLAASRQAWDE 677

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFL 806
              + +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++N  +
Sbjct: 678 ALAKGEKHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRMV 737

Query: 807 VNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-HATAF 849
              L+     +  +   ++Y    GS+     +  D LK      A 
Sbjct: 738 PEALRTLGYNEGDIAEIIRYAVGHGSLRGAPHVNHDTLKAKGFDDAM 784



 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 12/142 (8%)

Query: 805 FLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA--------FEIDPM 854
           +  + L       E + +   Y  G  ++     + D+   +   A          +   
Sbjct: 826 YTFDMLAWLGFTREQIDAANTYVTGAMTLEGAPFLKDEHLPVFDCASPCGRVGKRYLSVD 885

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVE 912
             I   +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  +   
Sbjct: 886 SHIRMMAAAQPFISGAISKTINMANNATVEDCKNAYMLSWRLGIKANALYRDGSKLSQPL 945

Query: 913 KSTLKGVDGKLNAVPVTDPNSS 934
           +++L    G+L         +S
Sbjct: 946 QASLLEDAGELADELADASATS 967


>gi|312890959|ref|ZP_07750486.1| ribonucleoside-diphosphate reductase class II [Mucilaginibacter
           paludis DSM 18603]
 gi|311296556|gb|EFQ73698.1| ribonucleoside-diphosphate reductase class II [Mucilaginibacter
           paludis DSM 18603]
          Length = 1104

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 111/537 (20%), Positives = 205/537 (38%), Gaps = 56/537 (10%)

Query: 358 LFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
              S    PQ  +CF+ +V D   +  GI       A + KY  G+G +++ +RG    +
Sbjct: 173 KSTSAYERPQPHACFILSVDDDLVNEGGIMDLWVREARIFKYGSGVGTNFSKIRGESEKL 232

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            G  G S G++ FLK+ +  A A+  G   R+ A    L+  H ++E F++ +    ++ 
Sbjct: 233 SG-GGYSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDLDHPEIESFVNWK---VEEE 288

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE-NYERQADRG 532
           ++   +  A +  D       +   +   S    ++   +    F    E        R 
Sbjct: 289 KKVAALIAAGYSSDY------EGEAYRTVSGQNSNNSVRIPNSFFNALKEGKQWDLTGRM 342

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +V + +SA  LW  +    +    P + +    N        G +++SN C+E     
Sbjct: 343 NGRVIKSVSAQKLWDDIAFAAWACADPGVQYDTTINEWHTCPEGGRINASNPCSEYMF-- 400

Query: 593 SSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              +   CNL SINL  +F      FD      T R    VL+  + +     +   + +
Sbjct: 401 --LDNTACNLASINLAHYFDADTRVFDVKGFEHTCRIWTIVLEISVLMAQFPSKDVAQLS 458

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + +R +GLG     SAL +  IPY S +A  I       ++  A + S E+A+E G +S 
Sbjct: 459 YDYRTLGLGYANLGSALMVNGIPYDSDKARAIGGAITAIMTGTAYATSAEMAREMGTFSK 518

Query: 711 FKGSLWDQGVFPIDSIGL-----------------LAEVRDELAMNRTSRLPWDELKKRV 753
           +  +         +                     + +      +   +   WD+  +  
Sbjct: 519 YAENKEHMLRVMRNHRYAAYNSTENYEGLEIAPPGIDQKYCPDYLLSAACNAWDKAVEMG 578

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELK 811
           +  G RN+    IAPT TI  +    +  I+P +  + + K +  G F ++N  +   LK
Sbjct: 579 EQYGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLSGGGYFKIINQAVPAALK 638

Query: 812 QRDLWDEAMISDLKYHDG--SIGNIERIP--------------DDLKKIHATAFEID 852
                +  + + + Y  G  ++     +               + L K   +AFEI 
Sbjct: 639 NLGYKEHEVTAIINYAKGTATLNGAPHVNLNSLKAKGLTDSELEKLDKAVVSAFEIS 695



 Score = 88.0 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           N L+      + +    +Y  G  ++     +  +   I   A          I     I
Sbjct: 724 NLLRALGYSKKQIAEANEYICGNMTVEGAPYLKTEHYPIFDCANKCGAKGERYIHAHGHI 783

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
           +  +  Q ++  A S  + L  E    ++   Y+ +W +GLK     R     S   ST 
Sbjct: 784 KMMASAQPFLSGAISKTINLPHEAKVDEIKDCYQLSWQLGLKANALYRDGCKLSQPLSTK 843

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIP 941
                + +    T       +  + 
Sbjct: 844 SDQKEEADDKLDTVEEVLGQAANVK 868


>gi|260576393|ref|ZP_05844384.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
 gi|259021464|gb|EEW24769.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacter sp. SW2]
          Length = 1222

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/577 (21%), Positives = 206/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 175 YYVDYKSGELTKSASAYEHPQPHACFIQSVKDDLVGDGGIMDLWVREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H DVE F
Sbjct: 235 FSSLRGEGERLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDVDHPDVEAF 293

Query: 463 LDLRKNTGDD-----------RRRTHDMNTAN---------------------------- 483
           ++ +                  ++ +++ TA                             
Sbjct: 294 INWKVIEEQKVASLVAGSKMHEQKLNEIFTAIGGWDGSIADATDPAKNEALKAAIRGAKR 353

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++ RV Q              +  W   +   VS  +         A+      
Sbjct: 354 VMIPETYINRVLQYARQGFSSIEFPTYDTDWDSEAYISVSGQNSNNSVRVTDAFLQAVKD 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R + KV + I A  LW ++    +    P I F D  N        G + +S
Sbjct: 414 DADWALIRRTDGKVSKTIKAKELWDQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  FAN QFD +      R     L+  + +    
Sbjct: 474 NPCSEYMF----LDDTACNLASMNLLTFFANGQFDAESYIHACRLWTVTLEISVMMAQFP 529

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  + + Y S E   +       ++  A + S E+A
Sbjct: 530 SKEIAQLSYDFRTLGLGYANIGGLLMNMGLGYDSAEGRAMCGALTALMTGVAYATSAEMA 589

Query: 703 QERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRL 744
            E GA++ +  +         +                     L      +  +   ++ 
Sbjct: 590 GELGAFAGYARNSAHMLRVIRNHRTAAYGRTSGYEALNVAPVPLDQVNCPDQTLVTLAKS 649

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 650 AWDEALVLGEKHGFRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 709

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + +    GSIGN   I
Sbjct: 710 NQSVPAALEKLGYGSAQIAEIIAHAVGHGSIGNCPGI 746



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 11/146 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L+Q       + +   +  G+  +     +      +   A          +     I
Sbjct: 805 DLLRQLGFTKAQIDAANDHVCGTMTLEAAPFLKPAHYSVFDCANPCGKTGKRYLSVEAHI 864

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q +I  A S  + + +  S  +    Y  +W +G+K     R  S  S   ++ 
Sbjct: 865 HMMAAAQSFISGAISKTINMANSASIGETLAAYELSWSLGIKANALYRDGSKLSQPLASA 924

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
              D    A  +   N    ++ +  
Sbjct: 925 LVEDDDEAADILASGNIHEKAMVLAE 950


>gi|320451209|ref|YP_004203305.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus scotoductus SA-01]
 gi|320151378|gb|ADW22756.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus scotoductus SA-01]
          Length = 1388

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 143/329 (43%), Gaps = 50/329 (15%)

Query: 598  AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
              C+LG++NL A+  + +F  ++    + TA+R LDNV+D+N   +   +++    R +G
Sbjct: 860  EPCDLGALNLAAYVKDGEFQMEEFRRDVHTAIRFLDNVLDVNRFALPDNEEAAKKLRRLG 919

Query: 658  LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
            LG+MG   AL  + +PY+S EA E   E M  +   AI AS  LA+ERG +  ++     
Sbjct: 920  LGVMGLADALIKMGLPYSSEEAREKVYEIMSAMREEAIKASEALAKERGVFPLYE----- 974

Query: 718  QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                     +  ++ L  R +     N   + +APT T + + G
Sbjct: 975  -----------------------AHQEYFEALGIRPRR----NVALLTVAPTGTTSMVMG 1007

Query: 778  VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN---------ELKQRDLWD-EAMISDLKYH 827
            VS  I+P +     +        +++   V          + ++   WD E +I+ ++  
Sbjct: 1008 VSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMETYPPHPDYEKDGKWDWEKIIAAIQED 1067

Query: 828  D-GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID------QAQSLNLYLDE- 879
              GS+ N+  +P+ ++++   A +I P+  +      Q+  D       + S  + L   
Sbjct: 1068 GHGSVKNLPFVPEAIRRVFECAHDIHPLDHVRMQGAVQRAFDAEGYAANSLSKTINLPNH 1127

Query: 880  PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
             + ++++  Y +A+  G K     R  S 
Sbjct: 1128 ATPEEVEEAYLEAYRTGCKGITVYRDGSR 1156



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 91/249 (36%), Gaps = 38/249 (15%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK--- 429
              VPDD+ GI  A +  A LA        D++ +R  GA I G+ G S G + FL    
Sbjct: 203 AIQVPDDMGGIVEAAKAAAALALKGLEPHVDFSLLRPEGAPIRGSGGTSSGPVSFLMEIF 262

Query: 430 ----------------------VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                                 V       V QGG R+GA  A L   H D+ +FL  + 
Sbjct: 263 DNFLEWAALGGEEAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIEHPDLLDFLTAKD 322

Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
              +         N +  + + FMK + ++A +   +P EV   +  Y       Y    
Sbjct: 323 LDREKAEGDISTFNISVLVTEAFMKALEEDALF-SVTPIEVPGKY--YPHPLGSTYTGQI 379

Query: 527 ------RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-- 578
                     +       K+ A  LW ++    + TG P + F D  N  S  + +G   
Sbjct: 380 PALPEREDGAKPVPLFGGKVPARWLWHEIAWHAWATGEPGLIFVDRINELSALKGLGPRY 439

Query: 579 -VHSSNLCT 586
            + S+N C 
Sbjct: 440 QIRSTNPCF 448



 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 63/179 (35%), Gaps = 38/179 (21%)

Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSS 348
           + F+     I   +YF   +G  +      F RVA  +A  E    +     +FY+L++S
Sbjct: 4   YFFDEHAQAIARRQYFQEGDGDIL----GMFRRVAREIAKVEKPEDRVYWEEKFYDLMAS 59

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCF----LTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
             F      L  +GT H  L +CF        P+   GI    ++ A++ K  GG G + 
Sbjct: 60  KRFSPGGRILAGAGTPHGNLLNCFVQGATQYPPESFNGIMEVAKKLALVTKVGGGNGVNL 119

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            P R  G                                +     AYL   H DV +F+
Sbjct: 120 DPYRSKGNRQR----------------------------QAVRGVAYLSARHPDVADFI 150


>gi|254476611|ref|ZP_05089997.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Ruegeria sp. R11]
 gi|214030854|gb|EEB71689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Ruegeria sp. R11]
          Length = 1216

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/612 (19%), Positives = 214/612 (34%), Gaps = 105/612 (17%)

Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG--------------TRHPQLSSC 371
           M   L        + +++N    + +  + P   +                  HPQ  +C
Sbjct: 133 MRYMLATQRAAPNSPQWFNTGLHWAYGINGPAQGHHYVDYKTGKLTKSDNAYEHPQPHAC 192

Query: 372 FLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           F+ +V D   +  GI       A L KY  G G +++ +RG G  + G  GKS G++ FL
Sbjct: 193 FIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEALSG-GGKSSGLMGFL 251

Query: 429 KVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD---------------- 471
           K+ +  A A+  G   R+ A    ++  H D+E+F++ +                     
Sbjct: 252 KIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIEWKVIEEQKVASIVAGSKMHEKML 311

Query: 472 ----DRRRTHDMNTANW--------------------IPDLFMKRVTQ------------ 495
               +  R+ D   A+                     IP+ ++KRV              
Sbjct: 312 NGLFEAIRSWDGAEADAYDPAVNEGLKKAIREAKKVAIPETYIKRVLDYAKQGHTSIEFP 371

Query: 496 --NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWR 547
             +  W   +   VS  +         A+ +           +R + KV + + A  LW 
Sbjct: 372 TYDTDWDSDAYSSVSGQNSNNSIRVTNAFLHAVQKDADWELINRVDGKVAKTVRARDLWE 431

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           K+    +    P I F D  N        G +  SN C+E        +   CNL S+NL
Sbjct: 432 KVGHAAWACADPGIQFHDTVNEWHTCPADGEIRGSNPCSEYMF----LDDTACNLASLNL 487

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
           L    + +F  +      R     L+  + +     ++  + ++  R +GLG       L
Sbjct: 488 LTFLKDGEFQAEDYMHACRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLGLGYANIGGLL 547

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK--------------- 712
             +   Y S E   +       ++  + + S E+A E G ++ ++               
Sbjct: 548 MNMGFGYDSIEGRALCGALTAIMTGVSYATSAEMASELGPFARYEANANHMLRVIRNHRA 607

Query: 713 ---GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
              GS+       +  + L      +  +   +   WDE     +  G RN+    +APT
Sbjct: 608 AAHGSVDGYEGLAVKPVPLDIANCPDPRLAELAMSSWDEALDLGEKHGYRNAQATVVAPT 667

Query: 770 ATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            TI  +    +  I+P +  + + K    G F ++N  +   L+        +   + Y 
Sbjct: 668 GTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALEGLGYSTAQIGEIVSYA 727

Query: 828 --DGSIGNIERI 837
              GSIGN   I
Sbjct: 728 VGHGSIGNAPAI 739



 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF-- 849
            +    T +N    + L+        + +   +  GS  +     + ++   I   A   
Sbjct: 784 VLGIPGTKLNDPTFDLLRHLGYTKAEIEAANDHVCGSMTLEGAPHLKEEHYSIFDCANPC 843

Query: 850 ------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902
                  +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K    
Sbjct: 844 GKKGKRYLSVDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQAAYELSWSLGVKANAL 903

Query: 903 LRSRSA 908
            R  S 
Sbjct: 904 YRDGSK 909


>gi|99080992|ref|YP_613146.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp.
           TM1040]
 gi|99037272|gb|ABF63884.1| ribonucleoside-diphosphate reductase class II [Ruegeria sp. TM1040]
          Length = 1217

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 115/577 (19%), Positives = 203/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T  +S   HPQ  +CF+ +V D      GI       A L KY  G G +
Sbjct: 168 HYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 228 FSHLRAEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 286

Query: 463 LDLRKNTGD--------------------DRRRTHDMNTANW------------------ 484
           ++ +                         +  RT D  + +                   
Sbjct: 287 IEWKVLEEQKVASIVAGSKMHEKMLNGIFEALRTWDGLSEDAYDPAENPALKKAIREAKK 346

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+ +    
Sbjct: 347 VAIPETYIKRVLDYARQGYDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEK 406

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + +V + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 407 DADWELINRTDGQVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  +    F  +      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASLNLLTFYQGGVFQAEDFMHASRLWTLTLEISVMMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 523 SKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSDEGRALCGSLTAIMTGVAYATSAEIA 582

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E G ++ ++ +         +                     L  +   +  +   +  
Sbjct: 583 SELGPFAGYERNADHMLRVMRNHRNAAYGATEGYDKLTVKPVPLDLQNCPDARLTELAMS 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 AWDEAVRLGEEHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  + + L+        +   + Y    GSIGN   I
Sbjct: 703 NRSVPSALEGLGYSSAQIEEIVSYAVGHGSIGNAPGI 739



 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + ++   I   A          + 
Sbjct: 793 NDPAFDLLRHLGFSKADIEAANDHVCGTMTLEGAPHLKEEHYSIFDCANPCGKKGKRYLG 852

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I+  +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  S 
Sbjct: 853 VESHIKMMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 912

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D    A  +   +    +  +  
Sbjct: 913 PLAAALVEDDDEAAEVLESGSVPEKAAVLAE 943


>gi|269838377|ref|YP_003320605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787640|gb|ACZ39783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sphaerobacter thermophilus DSM 20745]
          Length = 1139

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/508 (20%), Positives = 190/508 (37%), Gaps = 41/508 (8%)

Query: 358 LFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414
                   P   +CF+ +V D   +  GIF  +   A + KY  G G +++ +R  G  +
Sbjct: 191 YSQDAYSRPTPHACFIQSVEDDLVNPGGIFDLVTREARVFKYGSGSGTNFSKIRAEGEPL 250

Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
            G  G S G++ FLK+ +  A A+  G   R+ A    ++  H D+E F++ +       
Sbjct: 251 SG-GGTSSGLMSFLKIFDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAFINWKAEEEKKV 309

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
                   +          V+           +      L   E+            R +
Sbjct: 310 AALIAAGYSADFNGEAYATVSGQNSNNSVRVTDEFIRAVLTDGEW--------HLRWRTD 361

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            ++ + + A  LW ++    ++   P + F    N        G +++SN C+E      
Sbjct: 362 GRIAKTVRARDLWHQIAQAAWQCADPGVQFDTTINAWHTCPASGRINASNPCSEYMF--- 418

Query: 594 SEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
             +   CNL S+NL+  +      FD ++    +R    VL+  + +     E   + ++
Sbjct: 419 -LDDTACNLASLNLMKFYDAERRTFDIERFRHAVRLWTIVLEISVLMAQFPSEAIARKSY 477

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R +GLG     S L  + +PY S  A  IA      ++  A +AS E+A   G + +F
Sbjct: 478 EFRTLGLGYANLGSMLMTMGLPYDSDRARGIAAAVTAIMTGEAYAASAEMASVLGPFPAF 537

Query: 712 KGS------------LWDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRV 753
             +                   P +  GL      L        + + +R  WD      
Sbjct: 538 AENREHMLRVIRNHRRAAYNAHPGEYEGLSVAPVGLDPATCPEDLVQAAREAWDRALAMG 597

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELK 811
           +  G RN+    +APT TI  +    +  ++P +  + + K    G F + N  +   L+
Sbjct: 598 EQYGYRNAQTTLLAPTGTIGLLMDCDTTGVEPDFALVKFKKLAGGGYFKIANQSIAPALR 657

Query: 812 QRDLWDEAMISDLKYHDG--SIGNIERI 837
                +E +   L+Y  G  S+ N   I
Sbjct: 658 TLGYTEEQIEDILRYVLGTLSLDNAPHI 685



 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 808 NELKQRDLWDEAMI--SDLKYHDGSIGNIERIPDDLKKIHATAFE--------IDPMWLI 857
           N L++     + +   +D+     +I     + D+   +   A +        I  M  I
Sbjct: 743 NLLRELGFTPQQIAEANDVICGMQTIEGAPHLKDEHLPVFDCANKCGKHGRRFIHHMGHI 802

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q ++  A S  + + +E + + ++  Y  +W +GLK     R  S  S   S+ 
Sbjct: 803 RMMAAVQPFLSGAISKTINMPNEVTVEDIEEAYMASWRLGLKAMALYRDGSKLSQPLSSA 862

Query: 917 KGVDG 921
              D 
Sbjct: 863 SKQDQ 867


>gi|119384125|ref|YP_915181.1| ribonucleotide-diphosphate reductase subunit alpha [Paracoccus
           denitrificans PD1222]
 gi|119373892|gb|ABL69485.1| ribonucleoside-diphosphate reductase class II [Paracoccus
           denitrificans PD1222]
          Length = 1205

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 116/575 (20%), Positives = 201/575 (34%), Gaps = 90/575 (15%)

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDW 404
              +        +S   HPQ  +CF+ +V D   +  GI       A L KY  G G ++
Sbjct: 176 YVDYKTGKLVRSDSAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNF 235

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
           + +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H D+E+F+
Sbjct: 236 SSLRGEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFI 294

Query: 464 DLRKNTGDDR----------RRTHDMNTA------------------------------N 483
           + +                  R  +   A                               
Sbjct: 295 NWKVIEEQKVASLVAGSKMHERELNAIFAAIREWDGSVEDATDPAKNAVLKSAIRSAKRV 354

Query: 484 WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN----- 524
            IP+ ++ RV Q              +  W   +   VS  +         A+       
Sbjct: 355 MIPETYINRVLQYARQGFDSIEFPTYDTDWDSEAYVSVSGQNSNNSVRVTDAFLRAVRDD 414

Query: 525 -YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R + KV + +SA  LW ++    +    P I F D  N        G +  SN
Sbjct: 415 LPWELVRRTDGKVAKTVSARELWDQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRGSN 474

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
            C+E        +   CNL S+NLL+ ++  +FD D      R     L+  + +     
Sbjct: 475 PCSEYMF----LDDTACNLASMNLLSFWSGKEFDADGYVHASRLWTVTLEISVMMAQFPS 530

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           ++  + ++  R +GLG       L  + + Y S E   +       ++  + + S E+A 
Sbjct: 531 KEIAQRSYDFRTLGLGYANIGGLLMNMGLGYDSDEGRALCGALTAVMTGVSYATSAEMAA 590

Query: 704 ERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRDELAMNRT-----SRLPW 746
           E G +  +  +                G    + + +     D            ++  W
Sbjct: 591 ELGPFPGYGKNAQHMLRVIRNHRAAAYGTGAYEGVNVRPVELDTANCPDPRLVALAQGAW 650

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNS 804
           DE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N 
Sbjct: 651 DEALTLGEAHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 710

Query: 805 FLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
            +   L+        +   + Y  G  S+GN   I
Sbjct: 711 SVPAALETLGYGSAQIEEIIAYAVGHASLGNCPGI 745



 Score = 85.3 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 48/165 (29%), Gaps = 11/165 (6%)

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHA 846
            + +  +      +N    + L+        + +   +  G+  +     +  +   +  
Sbjct: 785 AFCRETLGIPAERLNDPTFDLLRHLGFTRAQIDAANDHVCGTMTLEGAPHLKPEHYSVFD 844

Query: 847 TAF--------EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
            A          +     I   +  Q +I  A S  + +    S       Y  +W +G+
Sbjct: 845 CANACGKKGTRYLSVESHIRMMAAAQSFISGAISKTINMPNSASIADALAAYELSWSLGI 904

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K     R  S  S   ++    D +     +   ++   +  +  
Sbjct: 905 KANALYRDGSKLSQPLASALVEDDEEAEEILATGSAQEKAAVLAE 949


>gi|315425011|dbj|BAJ46685.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 1044

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 204/532 (38%), Gaps = 57/532 (10%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR--------------HPQLSSCFLTTVPD---DLYGI 383
           +++N    + +  + P   +                   PQ  +CF+ ++ D   +  GI
Sbjct: 154 QWFNTGLHWAYGITGPPQGHYYYDEELKQVVPSKDAYSRPQAHACFILSIKDDLVNPGGI 213

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                + A + KY  G G +++ +R  G  + G  G S GV+ FLKV +  A ++  G  
Sbjct: 214 MDTWVKQARIYKYGSGEGCNYSTLRAKGEPLSG-GGVSSGVMSFLKVGDAVAGSIKSGGT 272

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+ A    L   H ++E+F+D +     + ++   +  A + PD               
Sbjct: 273 TRRAAKMVVLNIDHPEIEDFIDWKMK---EEQKVAALVAAGYSPDF-------EGEAYQT 322

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQA--DRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
              + S+       EF  A       A   R + K  + + A  LW K+    +    P 
Sbjct: 323 VSGQNSNNSVRVTNEFMRAVLENRDWALTRRTDGKPVKFVKARYLWEKIAKAAWACADPG 382

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + F    N  +     G ++++N C+E     +  +   CNL S+NL+  +   +  FD 
Sbjct: 383 LQFDTTINEWNTCPETGRINATNPCSEF----NFLDNTACNLASLNLVKFYDEEKGVFDV 438

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +     +R    VL+  + +  +   +  + ++  R++GLG       L  + +PY S E
Sbjct: 439 EAFRHAVRLWTIVLEITVGMAQYPSPEIAEMSYKTRSLGLGYANLGGLLMRMGLPYDSDE 498

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL--------------WDQGVFPID 724
              +A      ++    + S E+A   G +  F+ +               +       +
Sbjct: 499 GRAVAAVITALMTGEVYATSAEIASIAGPFEEFEKNRVHVLRVLNNHRRAIYQAKPHEYE 558

Query: 725 SIGLLAE----VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
            + +             +   +R  WD      +  G+RN+    IAPT TI  +    +
Sbjct: 559 GLEIKPHLPPLELAPKYLLDEARASWDRAVAMAEKYGVRNAQATLIAPTGTIGLLMDCDT 618

Query: 780 QSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
             ++P +  + +K     G F +VN  L   L++    ++ +   ++Y  G+
Sbjct: 619 LGVEPDFSLVKLKKLVGGGYFKLVNRSLEPALRKLGYSEKQIRDIIEYVIGT 670



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 14/144 (9%)

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA- 848
           K     +         + LK     DE +        GS  +     I  +   +   A 
Sbjct: 722 KRLGIPENVYKAPDF-SLLKYLGFSDEEIRVSEDVICGSLTVEGAPHIKPEHIPVFDCAV 780

Query: 849 --------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                   F +     I   +  Q ++  A S  + + +E + + +  +Y  AW +GLK 
Sbjct: 781 PAGRKGKRF-VHYRAHILMMAAIQPFLSGAISKTVNMPNEATVEDVAEVYMDAWRLGLKC 839

Query: 900 TYYLRSRSATSVEKSTLKGVDGKL 923
               R  S  S   +T K  + + 
Sbjct: 840 IAIYRDGSKLSQPLTTAKKTEEQA 863


>gi|46202431|ref|ZP_00053222.2| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1224

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 141/765 (18%), Positives = 256/765 (33%), Gaps = 124/765 (16%)

Query: 190 YDGL----SESDLE--TALIFSSRTLIEKEPNYAKVTARFLLE-KLRREVLTTVYKKPQK 242
           YDG+    + S++      +  S T IE   ++++V    L +   R+  +    K+  +
Sbjct: 15  YDGIQFRKATSEIRNPDGSVVFSATDIEVPADWSQVACDVLAQKYFRKAGVPAKLKRVAE 74

Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
               +  C +        +   K R++ E         LA          + Y G +   
Sbjct: 75  KGVPDWLCRHEPDSEALAKLPEKERIVGEKSAKQVFDRLAG--------TWTYWGWK--- 123

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL---------SSFHFMC 353
             YF   + +R    +   M             +      +            S   F  
Sbjct: 124 GGYFNAEDDARAFRDEMACML--ARQMGAPNSPQWFNTGLHWAYGIDGPGQGHSYVDFKT 181

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
                  S   HPQ  +CF+ ++ D   +  GI       A L KY  G G +++ +RG 
Sbjct: 182 GKLVRSKSAYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSRLRGE 241

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F+  +   
Sbjct: 242 GEKLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEKFISWKVRE 300

Query: 470 GDDRR----------RTHDMNTANW-------------------------------IPDL 488
                          R      A                                 IP+ 
Sbjct: 301 EQKVAALVAGSRLAARCLTEVMAACREWDGQDGEARFDPKINKRLKKAIIEGRKCEIPEN 360

Query: 489 FMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEI------AYENYERQ 528
           +++RV Q              +  W   +   VS  +       +        +++    
Sbjct: 361 YIQRVIQFARQGYTQIDFPVLDTDWDSEAYLTVSGQNSNNSVRVDNGFLNAVLHDSDWNL 420

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
             R   K  + + A  LW ++    +    P I F    N        G +++SN C+E 
Sbjct: 421 KHRNSTKTSKTLKARDLWEQIGEAAWACADPGIQFDTTINEWHTCPESGRINASNPCSEY 480

Query: 589 TLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  +   CNL S+NLL     +  FD +      R    VL+  + +      K  
Sbjct: 481 MF----LDDTACNLASLNLLCFRNDDGSFDVEGFRHACRLWTMVLEISVLMAQFPSPKIA 536

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R +GLG       L    IPY S +   +       ++  + + S ++A+E GA
Sbjct: 537 ELSYEFRTLGLGYANVGGLLMAGGIPYDSDKGRALIGAITALMTGESYATSADMAEELGA 596

Query: 708 YSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDEL 749
           +  F+ +         +                     L A    +  +   SR  WDE 
Sbjct: 597 FEGFEKNRAAMMRVIRNHRRAAHGMGTGYEGLSVIPVPLDAANCPDAPLLAASRQAWDEA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLV 807
             + +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++N  + 
Sbjct: 657 LAKGEKHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRMVP 716

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERI-PDDLKKI-HATA 848
             L+     +  +   ++Y  G  S+     +  D LK      A
Sbjct: 717 EALRTLGYNEGDIAEIIRYAVGHASLRGAPHVNHDSLKAKGFDDA 761



 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 12/139 (8%)

Query: 805 FLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA--------FEIDPM 854
           +  + L       E + +   Y  G  ++     + D+   +   A          +   
Sbjct: 804 YTFDMLAFLGFSKEQIDAANTYVTGAMTLEGAPFLKDEHLPVFDCASPCGRIGKRYLGVD 863

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVE 912
             I   +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  +   
Sbjct: 864 SHIRMMAAAQPFISGAISKTINMANSATVEDCKEAYMLSWRLGIKANALYRDGSKLSQPL 923

Query: 913 KSTLKGVDGKLNAVPVTDP 931
           +++L    G+L        
Sbjct: 924 QASLLDDAGELADDLADAS 942


>gi|126737866|ref|ZP_01753596.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           SK209-2-6]
 gi|126721259|gb|EBA17963.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           SK209-2-6]
          Length = 1239

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 196/577 (33%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 195 HYVDFETGKLTKSKSSYEHPQPHACFIQSVSDDLVNDGGIMDLWVREARLFKYGSGTGTN 254

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 255 FSHLRGEGEPLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 313

Query: 463 LDLR---------------------------KNTGDDRRRTHDMNTAN------------ 483
           +  +                             + D          +N            
Sbjct: 314 IQWKVLEEQKVASIVAGSKMHEKMLNGIFEAIRSWDGEATDAYEPNSNPALKKAVREAKK 373

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+ +    
Sbjct: 374 LSIPETYIKRVLDYAKQGYDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEK 433

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R   +V + + A  LW K+    +    P I F D  N      + G +  S
Sbjct: 434 DADWELINRTNGEVAKTVKARELWEKVGHAAWACADPGIQFHDTVNEWHTCLNDGEIRGS 493

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL       F  +      R     L+  + +    
Sbjct: 494 NPCSEYMF----LDDTACNLASLNLLTFLKAGNFQAEDFMHACRLWTVTLEISVTMAQFP 549

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            +   + +H +R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 550 SKAIAQRSHDYRTLGLGYANIGGLLMNMGFSYDSEEGRALCGSLTALMTGVAYATSAEMA 609

Query: 703 QERGAYS-SFKGSLWDQGVFPIDSIGLLAEVRDE-----LAMNRTSRLP----------- 745
            E G+++     S     V        L +           +    R             
Sbjct: 610 SELGSFAGYANNSEHMLKVIRNHRNAALGKATGYEGLSVPPVPLDIRGCPDARLTDLALG 669

Query: 746 -WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 670 AWDEALALGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 729

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L+        +   + Y    G+IGN   I
Sbjct: 730 NRSVPAALEGLGYSSAEIEEIVSYAVGHGTIGNAPGI 766



 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + ++   I   A          + 
Sbjct: 820 NDPTFDLLRHLGFNRADIDAANDHVCGTMTLEGAPHLKEEHYAIFDCANPCGKKGKRYLS 879

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ S +     Y  +W +G+K     R  S  S 
Sbjct: 880 VESHIRMMAAAQSFISGAISKTINMPNDASIEDCQRAYELSWSLGVKANALYRDGSKLSQ 939

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D    A  +        +  +  
Sbjct: 940 PLAAALVEDDDEAAETLETGTPQEKAAVLAE 970


>gi|315426696|dbj|BAJ48321.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus
           Caldiarchaeum subterraneum]
          Length = 1028

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 204/532 (38%), Gaps = 57/532 (10%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSGTR--------------HPQLSSCFLTTVPD---DLYGI 383
           +++N    + +  + P   +                   PQ  +CF+ ++ D   +  GI
Sbjct: 138 QWFNTGLHWAYGITGPPQGHYYYDEELKQVVPSKDAYSRPQAHACFILSIKDDLVNPGGI 197

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                + A + KY  G G +++ +R  G  + G  G S GV+ FLKV +  A ++  G  
Sbjct: 198 MDTWVKQARIYKYGSGEGCNYSTLRAKGEPLSG-GGVSSGVMSFLKVGDAVAGSIKSGGT 256

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+ A    L   H ++E+F+D +     + ++   +  A + PD               
Sbjct: 257 TRRAAKMVVLNIDHPEIEDFIDWKMK---EEQKVAALVAAGYSPDF-------EGEAYQT 306

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQA--DRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
              + S+       EF  A       A   R + K  + + A  LW K+    +    P 
Sbjct: 307 VSGQNSNNSVRVTNEFMRAVLEDRDWALTRRTDGKPVKFVKARYLWEKIAKAAWACADPG 366

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618
           + F    N  +     G ++++N C+E     +  +   CNL S+NL+  +   +  FD 
Sbjct: 367 LQFDTTINEWNTCPETGRINATNPCSEF----NFLDNTACNLASLNLVKFYDEEKGVFDV 422

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +     +R    VL+  + +  +   +  + ++  R++GLG       L  + +PY S E
Sbjct: 423 EAFRHAVRLWTIVLEITVGMAQYPSPEIAEMSYKTRSLGLGYANLGGLLMRMGLPYDSDE 482

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL--------------WDQGVFPID 724
              +A      ++    + S E+A   G +  F+ +               +       +
Sbjct: 483 GRAVAAVITALMTGEVYATSAEIASIAGPFEEFEKNRVHVLRVLNNHRRAIYQAKPHEYE 542

Query: 725 SIGLLAE----VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
            + +             +   +R  WD      +  G+RN+    IAPT TI  +    +
Sbjct: 543 GLEIKPHLPPLELAPKYLLDEARASWDRAVAMAEKYGVRNAQATLIAPTGTIGLLMDCDT 602

Query: 780 QSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
             ++P +  + +K     G F +VN  L   L++    ++ +   ++Y  G+
Sbjct: 603 LGVEPDFSLVKLKKLVGGGYFKLVNRSLEPALRKLGYSEKQIRDVIEYVIGT 654



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 14/144 (9%)

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA- 848
           K     +         + LK     DE +        GS  +     I  +   +   A 
Sbjct: 706 KRLGIPENVYKAPDF-SLLKYLGFSDEEIRVSEDVICGSLTVEGAPHIKPEHIPVFDCAV 764

Query: 849 --------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                   F +     I   +  Q ++  A S  + + +E + + +  +Y  AW +GLK 
Sbjct: 765 PAGRKGKRF-VHYRAHILMMAAIQPFLSGAISKTVNMPNEATVEDVAQVYMDAWRLGLKC 823

Query: 900 TYYLRSRSATSVEKSTLKGVDGKL 923
               R  S  S   +T K  + + 
Sbjct: 824 IAIYRDGSKLSQPLTTAKKTEEQA 847


>gi|254465729|ref|ZP_05079140.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium Y4I]
 gi|206686637|gb|EDZ47119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium Y4I]
          Length = 1214

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 117/577 (20%), Positives = 200/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T  +S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 167 HYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVKDGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 227 FSHLRAEGEPLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 285

Query: 463 LDLRKNTGDDRR------RTHDMNTA---------------------------------- 482
           +  +              + H+                                      
Sbjct: 286 IQWKVIEEQKVASIVAGSKMHEKMLNGLFEAIRSWDGGEADAYDPAVNSALKKAIREAKK 345

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+ +    
Sbjct: 346 VAIPETYIKRVLDYAKQGHTAIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEK 405

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + KV + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 406 NADWELINRTDGKVAKVVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL+      F  D+   + R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASLNLLSFLKEGLFQADEFMHSCRLWTLTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 522 SKEIAQRSYDFRTLGLGYANIGGLLMNMGYSYDSDEGRALCGALTALMTGVAYATSAEIA 581

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA+  +  +         +                     L      +  +   +  
Sbjct: 582 AELGAFPGYAKNADHMLRVIRNHRNAAKGNADGYEALSVKPVPLDIASCPDALLTDLAAS 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 AWDEALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  + + L+        +   + Y    GSIGN   I
Sbjct: 702 NRSVPSALEGLGYSSAQIEEIVSYAVGHGSIGNAPAI 738



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 48/160 (30%), Gaps = 11/160 (6%)

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE- 850
            +      +N    + L+      + + +   +  G+  +     + ++   I   A   
Sbjct: 783 VLGIPGPKLNDPTFDLLRHLGFTKKDIDAANDHVCGTMTLEGAPHLKEEHYAIFDCANPC 842

Query: 851 -------IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
                  +     I   +  Q +I  A S  + +    + +     Y  +W +G+K    
Sbjct: 843 GKKGKRFLSVDSHIYMMAAAQSFISGAISKTINMPNSATIEDCQKAYELSWSLGIKANAL 902

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            R  S  S   +     D    A  +   ++   +  +  
Sbjct: 903 YRDGSKLSQPLAAALVEDDDDAAEVLESGSNHEKAAVLAE 942


>gi|126735671|ref|ZP_01751416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. CCS2]
 gi|126714858|gb|EBA11724.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter sp. CCS2]
          Length = 1218

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 130/625 (20%), Positives = 216/625 (34%), Gaps = 110/625 (17%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGI 383
           GL             FY       +     T   S   HPQ  +CF+ +V D   +  GI
Sbjct: 152 GLHWAYGIDGPAQGHFY-----VDYQSGELTKSTSSYEHPQPHACFIQSVGDDLVNEGGI 206

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                  A L KY  G G +++ +RG G  + G  GKS G++ FLK+ +  A A+  G  
Sbjct: 207 MDLWVREARLFKYGSGTGTNFSSLRGDGEALSG-GGKSSGLMGFLKIGDRAAGAIKSGGT 265

Query: 443 KRKGAVCAYLETWHIDVEEFLDLR----------------------------KNTGDDRR 474
            R+ A    ++  H D+EEF++ +                            K+   +  
Sbjct: 266 TRRAAKMVIVDADHPDIEEFINWKVIEEQKVASIVAGSKMHARYLNAIFAAIKSWDGEEV 325

Query: 475 RTHDMNTANW------------IPDLFMKRVTQ--------------NAGWTLFSPDEVS 508
             +D  T               IP+ ++KRV                +  W   +   VS
Sbjct: 326 SAYDPKTNETLASAVKDAKKSAIPETYIKRVLDYAKQGYSSIEFPTYDTDWDSEAYSSVS 385

Query: 509 DLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             +         A+          +  +R   +V + I A  LW ++    +    P I 
Sbjct: 386 GQNSNNSIRVTDAFLKAVEDDADWKLINRRNGEVAKIIKARELWEQVGHAAWACADPGIQ 445

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622
           + D  N        G +  SN C+E        +   CNL S+NLL  + +  F  +   
Sbjct: 446 YHDTVNAWHTCPEDGEIRGSNPCSEYMF----LDDTACNLASMNLLTFYKDGTFQAEDYM 501

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R     L+  + +     ++  + ++  R +GLG       L  +   Y S E   +
Sbjct: 502 HATRLWTVTLEISVMMAQFPSKEIAQRSYDFRTLGLGYANIGGLLMNMGFGYDSDEGRAM 561

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKG-SLWDQGVFPIDSIGLLAEVRDELAMN-- 739
                  +S  + + S E+A E GA+  +K  S     V        L +      ++  
Sbjct: 562 GAALTAIMSGVSYATSAEMAGELGAFPGYKKNSKHMLRVIKNHRQAALGKADGYDKLDVK 621

Query: 740 ---------------RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
                            +   WDE  K  K  G RN+    IAPT TI  +    +  I+
Sbjct: 622 PVPLDHANCPDQRLIELAVGSWDEALKLGKKHGYRNAQVSVIAPTGTIGLVMDCDTTGIE 681

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIP-- 838
           P +  + + K    G F ++N  +   L++       +   + Y    GSIG    I   
Sbjct: 682 PDFALVKFKKLAGGGYFKIINQSVPAALEKLGYGSAQIEEIIAYAVGHGSIGQAPAINHT 741

Query: 839 ------------DDLKKIHATAFEI 851
                       D ++   A+AF+I
Sbjct: 742 SLIGHGFGQAELDKIEAALASAFDI 766



 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 47/151 (31%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+      + + +   +  G+  +     + D+   +   A          + 
Sbjct: 792 NDPTFDLLRHLGYSKQDIDAANDHVCGTMTLEGAPFLKDEHMTVFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VDSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D +     +   N    +  +  
Sbjct: 912 PLAAALVEDDEDAQETLETGNHHEKAAVLAE 942


>gi|260433625|ref|ZP_05787596.1| B12-dependent ribonucleoside diphosphate reductase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417453|gb|EEX10712.1| B12-dependent ribonucleoside diphosphate reductase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1209

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 122/577 (21%), Positives = 208/577 (36%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 167 YYVDYKTGKLTKSKSAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 227 FSHLRAEGEALSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEKF 285

Query: 463 LDLR---------------------------KNTGD-------DRRRTHDMNTANW---- 484
           ++ +                             T D       D ++   +  A      
Sbjct: 286 IEWKVIEEQKVASIVAGSKMHEKMLNGIFEAIRTWDGAQEDAYDPKKNDALKAAIREAKK 345

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYEN 524
             IP+ ++KRV                +  W   + + VS    +        F  A E 
Sbjct: 346 VAIPETYIKRVLDYAKQGHDSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTNAFLKAVEK 405

Query: 525 Y--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + KV + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 406 DADWELINRTDGKVAKVVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F         R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFLKDGEFQAADYMHAARLWTLTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   I       ++  A + S E+A
Sbjct: 522 SKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSDEGRAICGALTAIMTGVAYATSAEIA 581

Query: 703 QERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTSRL 744
            E G ++ +K +               QGV        +  + L      +  +   +  
Sbjct: 582 GELGPFAGYKRNADHMLRVIRNHRRAAQGVTEGYEKLSVKPVPLDHANCPDKRLVDLAMS 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 AWDEALSLGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  + + L++       +   + Y    G++GN   I
Sbjct: 702 NRSVPSALEKLGYSSAEIEEIVSYAVGHGTLGNAPGI 738



 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 11/150 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------ID 852
           N    + L+        + +   +  G+  +     +  +   I   A          + 
Sbjct: 792 NDPTFDMLRHLGFSKADIEAANDHVCGTMTLEGAPHLKPEHYSIFDCANPCGKKGKRFLG 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I+  +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VDSHIKMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             +     D    A  +   ++   ++ + 
Sbjct: 912 PLAAALVEDDNEAAEILESGSAREKAVTLA 941


>gi|163736546|ref|ZP_02143965.1| hypothetical protein RGBS107_15481 [Phaeobacter gallaeciensis
           BS107]
 gi|161390416|gb|EDQ14766.1| hypothetical protein RGBS107_15481 [Phaeobacter gallaeciensis
           BS107]
          Length = 1214

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 123/605 (20%), Positives = 215/605 (35%), Gaps = 105/605 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T  +S   HPQ  +CF+ +V D      GI       A L KY  G G +
Sbjct: 168 HYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 228 FSHLRGEGEPLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 286

Query: 463 LDLRKNTGD--------------------DRRRTHDMNTANW------------------ 484
           +D +                         +  R+ D   A+                   
Sbjct: 287 IDWKVIEEQKVASIVAGSKMHEKMLNGLFEAIRSWDGAEADAYNPTVNDGLKQAIREAKK 346

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+ +    
Sbjct: 347 VAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSDAYSSVSGQNSNNSIRVTNAFLHAVKK 406

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               +  +R + KV + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 407 DADWQLINRVDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPSDGEIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    +  F  +      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASLNLLTFLKDGVFQAEDYMHACRLWTVTLEISVMMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A
Sbjct: 523 SKEIAQRSYDFRTLGLGYANIGGLLMNMGFGYDSAEGRALCGALTAIMTGVSYATSAEMA 582

Query: 703 QERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            E G ++  +                  GS+       +  + L +    +  +   +  
Sbjct: 583 SELGPFARHEQNASDMLRVIRNHRAAAHGSVDGYEGLAVKPVPLDSANCPDPRLAELAMS 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 SWDEALELGERHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKI---HA 846
           N  +   L         +   + Y    G+IGN   I           P +L K+     
Sbjct: 703 NRSVPAALDGLGYSPAQIEEIVSYAVGHGTIGNAPGINHTSLAGHGFGPAELAKVDAALE 762

Query: 847 TAFEI 851
           +AF+I
Sbjct: 763 SAFDI 767



 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF-------- 849
           T +N    + L+        + +   +  GS  +     + ++   I   A         
Sbjct: 790 TKLNDPTFDLLRHLGFGKADIEAANDHVCGSMTLEGAPHLKEEHYHIFDCANPCGKKGKR 849

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S 
Sbjct: 850 YLGVESHILMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSK 909

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            S   +     D    A  +   +    ++ +  
Sbjct: 910 LSQPLAAALVEDDDEAAEVLESGSQQEKAVTLAE 943


>gi|85703576|ref|ZP_01034680.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           217]
 gi|85672504|gb|EAQ27361.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           217]
          Length = 1226

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 200/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 168 YYVDFQSGELTKSASAYEHPQPHACFIQSVKDDLVGDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H D++EF
Sbjct: 228 FSSLRGEGERLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIQEF 286

Query: 463 LDLRKNT----------------------------------------GDDRRRTHDMNTA 482
           ++ +                                            D  +        
Sbjct: 287 INWKVKEEQKVASIVAGSKMHEQKLNEIFAAIRAWDGSSEDSVDPKKNDQLKSAIRSAKQ 346

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+      
Sbjct: 347 VQIPETYVKRVLDYAKQGYESIEFPTYDTDWDSEAYASVSGQNSNNSIRVTDAFLKAVKD 406

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R +  V + I A  LW  +    +    P I + D  N        G +  S
Sbjct: 407 DADWALINRVDGSVAKTIKARDLWEDVGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  + + +FD D      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASMNLLKFYVDGKFDADAYMHATRLWTVTLEISVTMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 523 SKEIAQLSYEFRTLGLGYANIGGLLMNMGFGYDSDEGRALCGALTAIMTGVAYATSAEMA 582

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA++ +K +         +                     L  +   +  +   +  
Sbjct: 583 AELGAFAGYKRNSKHMLRVIRNHRNAAYGATEGYEALAVKPVPLDHKNCPDARLVDLAMA 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  K  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 SWDEALKLGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    G+IGN   I
Sbjct: 703 NQSVPAALEKLGYGPAQIEEIVSYAVGHGTIGNAPGI 739



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 13/152 (8%)

Query: 803 NSFLVNELKQRDL--WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF--------EID 852
           N    + L        D  + +D      ++     +  D   +   A          + 
Sbjct: 793 NDPTFDLLAHLGYSKRDIELANDHVCGTMTLEGAPYLKTDHYHVFDCANPCGKKGKRYLG 852

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ S       Y  +W +G+K     R  S  S 
Sbjct: 853 VESHITMMAAAQSFISGAISKTINMANDASIVDCQKAYELSWSLGVKANALYRDGSKLSQ 912

Query: 912 EK--STLKGVDGKLNAVPVTDPNSSTHSLGIP 941
               S ++  D     +    P      L   
Sbjct: 913 PLAASLVEDDDEAAEILESGTPQQKAQVLAEK 944


>gi|163742806|ref|ZP_02150191.1| ribonucleotide-diphosphate reductase alpha subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161384061|gb|EDQ08445.1| ribonucleotide-diphosphate reductase alpha subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 1214

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 123/605 (20%), Positives = 216/605 (35%), Gaps = 105/605 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T  +S   HPQ  +CF+ +V D      GI       A L KY  G G +
Sbjct: 168 HYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 228 FSHLRGEGEPLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 286

Query: 463 LDLRKNTGD--------------------DRRRTHDMNTANW------------------ 484
           +D +                         +  R+ D   A+                   
Sbjct: 287 IDWKVIEEQKVASIVAGSKMHEKMLNGLFEAIRSWDGAEADAYDPAVNDGLKQAIREAKK 346

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+ +    
Sbjct: 347 VAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSDAYSSVSGQNSNNSIRVTNAFLHAVKK 406

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               +  +R + KV + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 407 DADWQLINRVDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPSDGEIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    +  F  +      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASLNLLTFLKDGVFQAEDYMHACRLWTVTLEISVMMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A
Sbjct: 523 SKEIAQRSYDFRTLGLGYANIGGLLMNMGFGYDSAEGRALCGALTAIMTGVSYATSAEMA 582

Query: 703 QERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            E G ++ ++                  GS+       +  + L +    +  +   +  
Sbjct: 583 SELGPFARYEQNASDMLRVIRNHRAAAHGSVDGYEGLAVKPVPLDSANCPDPRLAELAMS 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 SWDEALELGERHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKI---HA 846
           N  +   L         +   + Y    G+IGN   I           P +L K+     
Sbjct: 703 NRSVPAALDGLGYSPAQIEEIVSYAVGHGTIGNAPGINHTSLAGHGFGPAELAKVDAALE 762

Query: 847 TAFEI 851
           +AF+I
Sbjct: 763 SAFDI 767



 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF-------- 849
           T +N    + L+        + +   +  GS  +     + ++   I   A         
Sbjct: 790 TKLNDPTFDLLRHLGFGKADIEAANDHVCGSMTLEGAPHLKEEHYHIFDCANPCGKKGKR 849

Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S 
Sbjct: 850 YLGVESHILMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSK 909

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            S   +     D    A  +   +    ++ +  
Sbjct: 910 LSQPLAAALVEDDDEAAEVLESGSQQEKAVTLAE 943


>gi|149203728|ref|ZP_01880697.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           TM1035]
 gi|149142845|gb|EDM30887.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           TM1035]
          Length = 1226

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 200/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 168 YYVDFQTGELTKSTSAYEHPQPHACFIQSVKDDLVGDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H D++EF
Sbjct: 228 FSSLRAEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIQEF 286

Query: 463 LDLRKNTGDDRR------RTHDMNTAN--------------------------------- 483
           ++ +              + H+                                      
Sbjct: 287 INWKVKEEQKVASIVAGSKMHEQKLNQIFAAIRAWDGSSEDAVDPKKNEQLKAAIRGAKQ 346

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+      
Sbjct: 347 VQIPETYVKRVLDYARQGYESIEFPTYDTDWDSEAYASVSGQNSNNSIRVTDAFLKAVKD 406

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R +  V + I A  LW  +    +    P I + D  N        G +  S
Sbjct: 407 DADWALINRTDGSVAKTIKARDLWEDVGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  F + +FD D      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASMNLLKFFGDGKFDADAYMHATRLWTVTLEISVTMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 523 SKEIAQLSYEFRTLGLGYANIGGLLMNMGFGYDSDEGRALCGALTAIMTGVAYATSAEMA 582

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA++ +K +         +                     L  +   +  +   +  
Sbjct: 583 GELGAFAGYKRNSKHMLRVIRNHRNAAYGATEGYEGLAVKPVPLDHKNCPDARLVDLAMA 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  K  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 SWDEALKLGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    G+IGN   I
Sbjct: 703 NQSVPAALEKLGYGPAQIEEIVSYAVGHGTIGNAPGI 739



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 13/162 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDL--WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF- 849
           + +      +N    + L        D  + +D      ++     +  D   +   A  
Sbjct: 783 NVLGIPTEKLNDPTFDILAHLGYSKRDVELANDHVCGTMTLEGAPYLKADHYHVFDCANP 842

Query: 850 -------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                   +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K   
Sbjct: 843 CGKKGKRYLGVESHITMMAAAQSFISGAISKTINMANDATIEDCQKAYELSWSLGVKANA 902

Query: 902 YLRSRSATSVEK--STLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             R  S  S     S ++  D     +    P      L   
Sbjct: 903 LYRDGSKLSQPLAASLVEDDDEAAEILESGTPQQKAQVLAEK 944


>gi|86138859|ref|ZP_01057431.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           MED193]
 gi|85824506|gb|EAQ44709.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter sp.
           MED193]
          Length = 1215

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 205/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 168 HYVDYKTGKLTKSTSSYEHPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 228 FSHLRGEGEALSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 286

Query: 463 LDLRKNTGD--------------------DRRRTHDMNTANW------------------ 484
           +  +                         +  R+ D   A+                   
Sbjct: 287 IQWKVIEEQKVAAIVAGSKMHEKMLNGIFEAIRSWDGVAADAYEPQVNPALKKAVREAKK 346

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+ +    
Sbjct: 347 VAIPETYVKRVLDYAKQGYDSIEFPIYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVKK 406

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               +  +R + KV + + A  LW K+    +    P I F D  N      + G +  S
Sbjct: 407 DADWQLINRTDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPNDGEIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  + + +F  +      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASLNLLTFYKDGKFQAEDYMHACRLWTVTLEISVTMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 523 SKEIAQRSYDFRTLGLGYANIGGLLMNMGYGYDSEEGRALCGSLTALMTGVAYATSAEMA 582

Query: 703 QERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRL 744
            E GA++ +  +         +                     L      +  +   +  
Sbjct: 583 SELGAFAGYAKNADAMLKVIRNHRTAAMGKATGYEGLSVPPVPLDIAGCPDARLADLAMG 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 AWDEALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
           N  +   L+        +   + Y  G  ++GN   I
Sbjct: 703 NRSVPAALEGLGYSSSQIEEIVSYAVGHATLGNAPGI 739



 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + ++  +I   A          +D
Sbjct: 793 NDPTFDLLRHLGFSKGDIDAANDHVCGTMTLEGAPHLKEEHYQIFDCANPCGKKGKRYLD 852

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
               I   +  Q +I  A S  + + ++ + ++    Y  +W +G+K     R  S 
Sbjct: 853 VESHIRMMAAAQSFISGAISKTINMPNDAAIEECQKAYELSWSLGVKANALYRDGSK 909


>gi|126731267|ref|ZP_01747074.1| ribonucleotide-diphosphate reductase alpha subunit [Sagittula
           stellata E-37]
 gi|126708178|gb|EBA07237.1| ribonucleotide-diphosphate reductase alpha subunit [Sagittula
           stellata E-37]
          Length = 1220

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 121/605 (20%), Positives = 204/605 (33%), Gaps = 105/605 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +         S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 168 YYVDYKTGKLVKSKSAYEHPQPHACFIQSVSDDLVSDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H D+EEF
Sbjct: 228 FSSLRAQGEALSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIEEF 286

Query: 463 LDLRKNTGD--------------------DRRRTHDMNTAN------------------- 483
           ++ +                         D  R  D   A+                   
Sbjct: 287 INWKVKEEQKVASIVAGSKMHEKMLNGIFDAIRAWDGTEADAYEPTANTALKKAVRTAKQ 346

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEI------AY 522
             IP+ ++KRV                +  W   +   VS  +                 
Sbjct: 347 AMIPETYIKRVLDYARQGYASIEFPTYDTDWDSEAYASVSGQNSNNSIRVTDAFLKAVRE 406

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +       R +  V + I A  LW ++    +    P I F D  N        G +  S
Sbjct: 407 DKPWELIRRTDGSVAKTIDAKELWEQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    +  F  D      R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASMNLLTFLKDGVFQSDDYMHATRLWTLTLEISVTMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A
Sbjct: 523 SKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSEEGRALCGALTAIMTGVSYATSAEMA 582

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA+S ++ +         +                     L      +  +   +  
Sbjct: 583 GELGAFSGYERNAKHMLKVIRNHRNAAWGKTTGYEKLEVKPVALDHRNCPDATLVELAMA 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  K  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 SWDEALKLGERHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIP--------------DDLKKIHA 846
           N  +   L +       +   + Y  G  ++GN   +               + ++   A
Sbjct: 703 NRSVPAALAKLGYGSAEIEEIIGYAVGHQTLGNAPGVNHTALIGHGFGPAQIEKVEAALA 762

Query: 847 TAFEI 851
           TAF+I
Sbjct: 763 TAFDI 767



 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + ++   +   A          + 
Sbjct: 793 NDPTFDMLRHLGFKKAEIDAANDHVCGTMTLEGAPHLKEEHYSVFDCANACGKKGKRYLS 852

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + +    + +     Y  +W +G K     R  S  S 
Sbjct: 853 VEAHIRMMAAAQSFISGAISKTINMPNTATIEDCQKAYELSWSLGTKANALYRDGSKLSQ 912

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             ++    D +  A  +   N+   +  +  
Sbjct: 913 PLASALVEDDEDAAEILETGNAQEKAQVLAE 943


>gi|194015491|ref|ZP_03054107.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus pumilus ATCC 7061]
 gi|194012895|gb|EDW22461.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus pumilus ATCC 7061]
          Length = 417

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 173/444 (38%), Gaps = 61/444 (13%)

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAV 543
           +PD F++   ++    +F P  V      YG   +                V + +I+  
Sbjct: 1   MPDKFIELAREDRPAYVFYPHTVY---KAYGTHLDEMDIGAMYDELVNNPAVRKERINPR 57

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA----- 598
            L  KM  +  E+G+P++ F+D  N      H+  V  SNLC+E+   S+  E       
Sbjct: 58  QLLEKMAVLRSESGYPYMMFQDNVNREHALNHISRVKFSNLCSEVLQASTVSEYTDYGEP 117

Query: 599 -------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650
                   CNLGS+N+    A        + + ++ AV  L  V +  N        K+N
Sbjct: 118 DDIGLDISCNLGSLNIANVMAGG-----SIENAVKLAVDALTVVSESTNIKNAPAVAKAN 172

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709
              R+IGLG M     L    I Y S EA + A+     +++  +  S ELAQE    + 
Sbjct: 173 REMRSIGLGAMNLHGYLAQNGIAYESEEARDFANVFFATVNYWTLVRSNELAQETGTTFE 232

Query: 710 SFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNC 763
            ++GS +  G +       D      +VR     +   + L W  L   V   G+ ++  
Sbjct: 233 GYEGSTYASGEYFDKYLEGDYRPKTDKVRALFKDIVIPTPLEWQVLSDNVNLHGLYHAYR 292

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
           +AIAP  +I+ +   + S+ P  + +  ++  +                           
Sbjct: 293 LAIAPNGSISYVQSATASVMPIMERIEERTYGNSKTYYP--------------------- 331

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SG 882
                     +  +       +  A+++D   +++  +  Q+ +DQ  S  L+L +  + 
Sbjct: 332 ----------MPGLSPQNWFFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTT 381

Query: 883 KKLDFIYRQAWLMGLKTTYYLRSR 906
           + L+ I   A   G+KT YY R++
Sbjct: 382 RDLNRIDLYAHHKGIKTLYYARTK 405


>gi|78223117|ref|YP_384864.1| ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
 gi|78194372|gb|ABB32139.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 279

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 36/314 (11%)

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
           +  +  +   D+  LA  I+TAVR LD+ ID N + +   +  +  +R IGLG+MG+   
Sbjct: 1   MARYLKDPGIDFPSLAEDIKTAVRFLDDTIDANIYPLPAIELMHKGNRKIGLGVMGWADL 60

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L  L +PY  P++  +A   M+F+   +  AS ELA+ERG + +F GS++D    P    
Sbjct: 61  LLRLGLPYNHPQSFALARSLMKFVRDTSRKASAELAEERGVFPNFAGSVYDAPDRPRVRN 120

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
                +     +                                  A I   S  I+P +
Sbjct: 121 ATTTTIAPTGTL----------------------------------ATIADCSSGIEPLF 146

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846
              Y ++ +  + T +N + +N  K+R L+ + ++  +    G++  I  IP D++++  
Sbjct: 147 ALAYKRNVLGTELTEINGYFLNVAKERGLFSDELMQKVME-QGNLRGITGIPADIRRLFK 205

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA EI     IE  +  Q++ D A S  + L    +   +   +  A+  G+K     R 
Sbjct: 206 TALEIPAADHIEMQAAFQEYTDNAVSKTVNLPARATRGDVAKAFLLAYEKGVKGITVFRY 265

Query: 906 RSATSVEKSTLKGV 919
            S        +   
Sbjct: 266 GSKKGTLVKFVDTD 279


>gi|254486479|ref|ZP_05099684.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Roseobacter sp. GAI101]
 gi|214043348|gb|EEB83986.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Roseobacter sp. GAI101]
          Length = 1217

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 202/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 167 YYVDYKTGKLTRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 227 FSSLRGAGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 285

Query: 463 LDLR--------------KNTGDDRRRTHDMNTA-------------------------- 482
           ++ +              K    +  +      A                          
Sbjct: 286 INWKVIEEQKVASIVAGSKMHERELNKLFAAIKAWDGIQADAYDPAKNDQLKAAIKDAKK 345

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             IP+ ++KRV                +  W   +   VS  +         A+ +   +
Sbjct: 346 CAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEK 405

Query: 529 ADRGE------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               E       +V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 406 DADWELMDRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFLEDGEFMVEDYMHASRLWTVTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A
Sbjct: 522 SKEIAQRSYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEIA 581

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E G++  +K +         +                     L      + A+   +  
Sbjct: 582 GELGSFPGYKKNADHMLRVIRNHRNAAYGKADGYENLSVKPVPLDHANCPQQALIEVATS 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 TWDEALRLGEQNGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    GSIGN   I
Sbjct: 702 NQSVPAALEKLGYGSAQIEEIVAYAVGHGSIGNAPGI 738



 Score = 81.4 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + LK      + + +   +  G+  +     +  +   I   A          + 
Sbjct: 792 NDPTFDLLKSLGFSKKDVDAANDHVCGTMTLEGAPHLKPEHYNIFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VNSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             ++    D    A  +   N    ++ +  
Sbjct: 912 PLASALVEDDDEAAETLESGNIHDKAVVLAE 942


>gi|114765323|ref|ZP_01444440.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114542303|gb|EAU45332.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 1215

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 122/591 (20%), Positives = 211/591 (35%), Gaps = 105/591 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DD     GI       A L KY  G G +++ +R     + G 
Sbjct: 182 SAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAENERLSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +          
Sbjct: 241 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWKVKEEQKVASI 300

Query: 467 -----------KNTGDDRRRTH---------DMNTANW----------IPDLFMKRVTQ- 495
                          D  R            + NTA            IP+ ++KRV   
Sbjct: 301 VAGSKMHEKMLNAIFDAIRAWDGLESDAYEANANTALKTAIREAKKVAIPETYIKRVLDY 360

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEIAYE------NYERQADRGEIKV 536
                        +  W   +   VS  +         A+              R +  V
Sbjct: 361 ARQGYASIEFPTYDTDWDSEAYATVSGQNSNNSIRVTDAFLEAVREGRPWELIRRTDGSV 420

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW ++    +    P I F D  N        G +  SN C+E        +
Sbjct: 421 AKTVDAKELWEQIGHAAWACADPGIQFHDTVNAWHTCPADGEIRGSNPCSEYMF----LD 476

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+NLL    + QFD +      R     L+  + +     ++  + ++  R +
Sbjct: 477 DTACNLASMNLLTFLKDGQFDAESYMHATRLWTLTLEISVLMAQFPSKEIAQLSYDFRTL 536

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG       L  +   Y S E   +       ++  + + S E+A E GA+  ++ +  
Sbjct: 537 GLGYANIGGLLMNMGFSYDSDEGRALCGALTALMTGVSYATSAEIAGELGAFPGYERNAE 596

Query: 717 DQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                  +                     L      + A+   ++  WDE  +  +  G 
Sbjct: 597 HMLRVIRNHRTAAYGRTDGYEGLSVKPVALDHGNCPDQALVALAKSAWDEALRLGEQHGY 656

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L++    
Sbjct: 657 RNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSALEKLGYS 716

Query: 817 DEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA---TAFEI 851
              +   + Y    G++GN   I           P  ++K+     TAF+I
Sbjct: 717 SSQIEEIVGYAVGHGTLGNAPGINHTALIGMGFGPAQIEKVERALGTAFDI 767



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 13/142 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + LK        + +   +  G+  +     +  +   I   A          +     I
Sbjct: 798 DLLKHLGFTKADIEAANDHVCGTMTLEGAPHLKSEHLSIFDCANPCGKKGKRYLSVNSHI 857

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST- 915
              +  Q +I  A S  + +    + +     Y  +W +G+K     R  S  S   ++ 
Sbjct: 858 HMMAAAQSFISGAISKTINMPNAATVEDCQKAYELSWSLGVKANALYRDGSKLSQPLASA 917

Query: 916 -LKGVDGKLNAVPVTDPNSSTH 936
            ++  D  L  +    P     
Sbjct: 918 LVEDDDDALETLESGTPQEKAQ 939


>gi|153009461|ref|YP_001370676.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561349|gb|ABS14847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum anthropi ATCC 49188]
          Length = 1263

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 138/712 (19%), Positives = 246/712 (34%), Gaps = 126/712 (17%)

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-----RYFLHINGSRIEM 316
           + ++   +   +        A     E D     +    ++D       +    G     
Sbjct: 73  KKIEENDVPSWLWRSVADEDALAKLPENDRYGSEMDACQVFDRLAGTWTYWGWKGGYFAS 132

Query: 317 PQAFFM-RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------S 361
            +     R  +   L        + +++N    + +    P   +              S
Sbjct: 133 EEDALAFRDELAYMLATQRVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDWQTGKLTKSKS 192

Query: 362 GTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
              HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G  
Sbjct: 193 AYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSG-G 251

Query: 419 GKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL------------ 465
           GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++D             
Sbjct: 252 GKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLV 311

Query: 466 -------------------RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ-- 495
                               +   DD          +R       N +P+ ++KRV Q  
Sbjct: 312 TGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFA 371

Query: 496 ------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVF 537
                       +  W   +   VS  +       +  +              R + +V 
Sbjct: 372 RQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVM 431

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW K+    + +  P + +    N        G + +SN C+E        + 
Sbjct: 432 KTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPTAGPIRASNPCSEYMF----LDD 487

Query: 598 AVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             CNL SINLL +   +  FD      T R    VL+  + +     ++  + ++ +R +
Sbjct: 488 TACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKEIARLSYEYRTL 547

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK---- 712
           GLG       L    IPY S E   I       ++  A + S E+A+E G + S++    
Sbjct: 548 GLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAE 607

Query: 713 --------GSLWDQGVFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                     L   G         ++ + L+AE   +  M   +R  WD+  +  +  G 
Sbjct: 608 HMLRVIRNHRLAAHGETEGYEGLAVNPVALIAEDCPDQDMITHARAAWDKALELGEKHGY 667

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+     
Sbjct: 668 RNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYS 727

Query: 817 DEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HATAFEID 852
           +  +     Y    G+I     I P  LK                 +AF+I 
Sbjct: 728 ESQIAEIEAYAVGHGNINQAPGINPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 11/167 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPALGFAKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNDATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                R  S  S   +     D +     V     +  +        
Sbjct: 911 ANALYRDGSKLSQPLNAALISDDEDEDDAVEALIEAPAAARAVQVTE 957


>gi|77463055|ref|YP_352559.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387473|gb|ABA78658.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1218

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/723 (17%), Positives = 242/723 (33%), Gaps = 122/723 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V +  L +K  R+                ++ +  +    ++   V        + +
Sbjct: 47  WSQVASDVLAQKYFRKA----------GVPARLKRVKEKGVPDFLWRSVPDEAELAKLPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +        +   D              YF     +R          +A  +A   +  
Sbjct: 97  EERFVGETSARQVFDRLAGAWAYWGWKGGYFSTEADARAY-YDEMRHMLARQMAAPNSP- 154

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTVPD--- 378
                +++N    + +    P+  +              S   HPQ  +CF+ +V D   
Sbjct: 155 -----QWFNTGLHWAYGIDGPSQGHFYVDHATGKLQKSDSAYEHPQPHACFIQSVQDDLV 209

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +  GI       A L KY  G G +++ +RG G  + G  GKS G++ FLK+ +  A A+
Sbjct: 210 NEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG-GGKSSGLMGFLKIGDRAAGAI 268

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-----------RRRTHDMNTAN--- 483
             G   R+ A     +  H D+E+F++ +                   + +D+  A    
Sbjct: 269 KSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQKVASLVAGSKQHEAKLNDIFAAIRSF 328

Query: 484 --------------------------WIPDLFMKRVTQ--------------NAGWTLFS 503
                                      IP+ ++ RV Q              +  W   +
Sbjct: 329 DGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINRVLQYARQGFSSIEFPTYDTDWDSEA 388

Query: 504 PDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              VS  +         A+              R + KV + I A  LW ++    +   
Sbjct: 389 YTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRTDGKVAKTIKARELWDQVGHAAWACA 448

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P I F D  N        G +  SN C+E        +   CNL S+NLL  F   +FD
Sbjct: 449 DPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMF----LDDTACNLASMNLLTFFEAGRFD 504

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +      R     L+  + +     ++  + ++  R +GLG       L  + + Y S 
Sbjct: 505 AEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGLGYDSS 564

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFK-------------GSLWDQGVFPID 724
           E   +       ++  A + S E+A E GA+S ++              +         +
Sbjct: 565 EGRALCGALSAIMTGVAYATSAEMAGELGAFSGYERNAGHMLRVIRNHRTAAHGHTTGYE 624

Query: 725 SIGLLAEVRDELAMNRT-----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
            + +     D++          ++  WDE  +  +  G RN+    IAPT TI  +    
Sbjct: 625 GVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGEAHGYRNAQVTVIAPTGTIGLVMDCD 684

Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIE 835
           +  I+P +  + + K    G F ++N  +   L+        +   + Y    G++ N  
Sbjct: 685 TTGIEPDFALVKFKKLAGGGYFKIINRSVPAALETLGYASAQISQIVAYAVGHGTLANCP 744

Query: 836 RIP 838
            I 
Sbjct: 745 TIS 747



 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 42/146 (28%), Gaps = 11/146 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L+        + +   +  G+  +     +  +   +   A          +     I
Sbjct: 805 DLLRHLGFTRAQIEAANDHVCGTMTLEGAPHLKAEHLPVFDCANPCGKKGKRYLSVESHI 864

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q +I  A S  + +    +  +    Y  +  +G+K     R  S  S   ++ 
Sbjct: 865 HMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQPLASA 924

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
              D +     +        ++ +  
Sbjct: 925 LVEDDEEAEEILATGTPQEKAIVLAE 950


>gi|254510648|ref|ZP_05122715.1| putative ribonucleoside-diphosphate reductase
           adenosylcobalamin-dependent [Rhodobacteraceae bacterium
           KLH11]
 gi|221534359|gb|EEE37347.1| putative ribonucleoside-diphosphate reductase
           adenosylcobalamin-dependent [Rhodobacteraceae bacterium
           KLH11]
          Length = 1232

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/577 (20%), Positives = 205/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 193 HYVDYKTGKLTKSKSAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTN 252

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 253 FSHLRAEGEALSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 311

Query: 463 LDLR---------------------------KNTGD-------DRRRTHDMNTANW---- 484
           ++ +                             T D       D  +   + +A      
Sbjct: 312 IEWKVIEEQKVASIVAGSKMHEKMLNGIFEAIRTWDGATEDAYDPNKNDSLKSAVREAKK 371

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+      
Sbjct: 372 VAIPETYIKRVLDYARQGHDSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLTAVEK 431

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + KV + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 432 DADWELINRTDGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPEDGEIRGS 491

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F         R     L+  + +    
Sbjct: 492 NPCSEYMF----LDDTACNLASMNLLTFLKDGEFQAADYMHASRLWTLTLEISVTMAQFP 547

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   I       ++  A + S E+A
Sbjct: 548 SKEIAQLSYDFRTLGLGYANIGGLLMNMGYSYDSDEGRAICGALTAIMTGVAYATSAEIA 607

Query: 703 QERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTSRL 744
            E G +  ++ +               QGV        +  + L      +  +   +  
Sbjct: 608 GELGPFKGYERNADHMLRVIRNHRRASQGVTEGYEKLAVKPVPLDHGNCPDKRLIDLAMS 667

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 668 AWDEALNLGEKNGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 727

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  + + L++       +   + Y    G+IGN   I
Sbjct: 728 NRSVPSALEKLGYSSAQIEEIVGYAVGHGTIGNAPGI 764



 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE------- 850
           T +N    + L+        + +   +  G+  +     + ++   I   A         
Sbjct: 815 TKLNDPTFDLLRHLGFTRADIEAANDHVCGTMTLEGAPHLKEEHYSIFDCANPCGKKGKR 874

Query: 851 -IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S 
Sbjct: 875 FLGVDSHITMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSK 934

Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            S   +     D    A  +   ++   ++ +  
Sbjct: 935 LSQPLAAALVEDDDEAAEVLESGSTQEKAVVLAE 968


>gi|254469591|ref|ZP_05082996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Pseudovibrio sp. JE062]
 gi|211961426|gb|EEA96621.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Pseudovibrio sp. JE062]
          Length = 1223

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/580 (20%), Positives = 203/580 (35%), Gaps = 92/580 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F     T   +   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 175 HYVDFETGKLTRSATAYEHPQPHACFIQSVDDDLVNENGIMDLWVREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF
Sbjct: 235 FSSLRASGERLAG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEF 293

Query: 463 LDLRKNTGDDR----------------------------------------RRTHDMNTA 482
           +  + +                                             +R       
Sbjct: 294 VTWKVHEEQKVAAIVTGSKVCQKHLQAVMKACVNCEGSGDDCFDPKKNPALKREMRAAKK 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKE----FEIAYEN 524
             +P+ +++RV Q              N  W   +   VS  +          F  A   
Sbjct: 354 AMVPENYIQRVVQFARQGYKTIEFPTYNTDWDSEAYLTVSGQNSNNSVRVTDGFLKAVTA 413

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  G I  +  + I A  LW ++    + +  P + +    N        G + +S
Sbjct: 414 DGEWDLIGRIDGETKKTIKAAELWEQIGYAAWASADPGLQYHTTINEWHTCPQGGEIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           N C+E        +   CNL S+NLL     + QFD+DK     R    VL+  + +   
Sbjct: 474 NPCSEYMF----LDDTACNLASLNLLQFRQDDGQFDFDKFEHATRLWQIVLEISVMMAQF 529

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             ++  + ++ +R  GLG       L    I Y S E   +       ++    + S E+
Sbjct: 530 PSKQIAELSYEYRTTGLGYANIGGLLMTSGIAYDSDEGRALCGAITAIMTGVCYATSAEM 589

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSR 743
           A E GA+  ++ +  D      +                     L A    +  +   +R
Sbjct: 590 AGELGAFPRYEENAKDMLRVIRNHRRAAHSDTQGYEKLSTLPVPLDAANCPQADLVERAR 649

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTV 801
           L WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F +
Sbjct: 650 LAWDKALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 709

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIPD 839
           +N  +   L+     +  +     Y    GSI     I +
Sbjct: 710 INRAVPEALRALGYSEAEIGEIEAYAVGHGSIAQAPAINE 749



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAFE--------IDPMWLI 857
           + L         + +   +  G  ++     + ++   +   A          +     I
Sbjct: 806 DLLTHMGFNKADIEAANTHVCGAMTLEGAPHLKEEHYPVFDCANPCGRIGKRFLSVDSHI 865

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +  +  Q +I  A S  + +    S +     Y  +W +GLK     R  S 
Sbjct: 866 KMMAAAQPFISGAISKTINMANTASVEDCKDAYMLSWKLGLKANALYRDGSK 917


>gi|260426808|ref|ZP_05780787.1| vitamin B12-dependent ribonucleotide reductase [Citreicella sp.
           SE45]
 gi|260421300|gb|EEX14551.1| vitamin B12-dependent ribonucleotide reductase [Citreicella sp.
           SE45]
          Length = 1213

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 118/591 (19%), Positives = 208/591 (35%), Gaps = 105/591 (17%)

Query: 361 SGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V DD     GI       A L KY  G G +++ +R  G  + G 
Sbjct: 182 SAYEHPQPHACFIQSVADDLVSDGGIMDLWVREARLFKYGSGTGTNFSSLRAEGERLSG- 240

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-- 474
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF++ +          
Sbjct: 241 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEFINWKVKEEQKVASI 300

Query: 475 ----RTHDMNTANW----------------------------------IPDLFMKRVTQ- 495
               + H+                                        IP+ ++KRV   
Sbjct: 301 VAGSKMHEQMLNAIFDAIRAWDGLESDAYEASANIALKKAIREAKKLAIPETYIKRVLDY 360

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKV 536
                        +  W   +   VS  +         A+              R +  V
Sbjct: 361 ARQGYASIEFPTYDTDWDSEAYATVSGQNSNNSIRVTDAFLEAVRTGAPWELVRRTDGSV 420

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW ++    +    P I F D  N        G +  SN C+E        +
Sbjct: 421 AKTVDARELWEQIGHAAWACADPGIQFHDTVNAWHTCPADGEIRGSNPCSEYMF----LD 476

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+NLL    +  FD +      R     L+  + +     ++  + ++  R +
Sbjct: 477 DTACNLASMNLLTFLKDGSFDAETYMHATRLWTLTLEISVLMAQFPSKEIAQLSYDFRTL 536

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG       L  +   Y S E   +       ++  + + S E+A E GA+  ++ +  
Sbjct: 537 GLGYANIGGLLMNMGYSYDSDEGRALCGALTAIMTGVSYATSAEIAGELGAFPGYERNAE 596

Query: 717 DQGVF------------------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                                   +  + L      + A+   ++  WDE  +  +  G 
Sbjct: 597 HMLRVIRNHRTAAYGRTDGYEGLQVKPVALDHGNCPDKALVALAKSAWDEALRLGEQHGY 656

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L +    
Sbjct: 657 RNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPSALAKLGYS 716

Query: 817 DEAMISDLKYH--DGSIGNIERIP--------------DDLKKIHATAFEI 851
              +   + +    G++GN   I               D +++  ATAF+I
Sbjct: 717 SSQVEEIVGHAVGHGTLGNAPGINHTALIGHGFGPAQIDKVERSLATAFDI 767



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 13/142 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L+        + +   +  G+  +     + D+   +   A          +     I
Sbjct: 798 DLLRHLGFSKAEIDAANDHVCGTMTLEGAPFLKDEHLAVFDCANPCGKKGKRYLSVNSHI 857

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST- 915
              +  Q +I  A S  + +    + +     Y  +W +G+K     R  S  S   +  
Sbjct: 858 HMMAAAQSFISGAISKTINMPNSATVEDCQKAYELSWSLGVKANALYRDGSKLSQPLAAA 917

Query: 916 -LKGVDGKLNAVPVTDPNSSTH 936
            ++  D  L  +    P     
Sbjct: 918 LVEDDDDALEVLESGTPQEKAQ 939


>gi|85704837|ref|ZP_01035938.1| ribonucleoside reductase, intein-containing [Roseovarius sp. 217]
 gi|85670655|gb|EAQ25515.1| ribonucleoside reductase, intein-containing [Roseovarius sp. 217]
          Length = 1131

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 141/374 (37%), Gaps = 49/374 (13%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDIN 639
           C E  L         C LGSINL              D   L   +R AVR++DNV+D++
Sbjct: 638 CGEQPLPPY----GACLLGSINLARLVTEPFATGARVDAAALDDLVRVAVRMMDNVVDVS 693

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +          R IGLG+ G   AL ++ + Y S EAV+  +  +  I+  A  ASV
Sbjct: 694 GFPLPAQAAEAQAKRRIGLGVTGLADALLMVGLRYGSDEAVQQTEAWLHAIARAAYLASV 753

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +LA+E+GA+  F                     RD    + T +   ++++  V   G+R
Sbjct: 754 DLAREKGAFPLF--------------------DRDAYLASGTMQAMDEDVRAAVAAHGIR 793

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+   +IAPT TI+   G  S  I+P +   Y +  +  D +     +V+      +W +
Sbjct: 794 NALLTSIAPTGTISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVD--YAVQMWRD 851

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            M                    L      A  + P   ++  +  QKW+D + S  +   
Sbjct: 852 RMGD----------------APLPSYFVNAQTLPPEDHVKMQAAAQKWVDSSISKTINCP 895

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            + S +    +Y QAW +G K     R    T    S  +  D          P +    
Sbjct: 896 EDISFEAFKNVYLQAWDLGCKGCTTYRPNDVTGSVLSVSETSDKVPGETRGDIPVTGGEV 955

Query: 938 LGIPSSCTSDTECE 951
           + +        E E
Sbjct: 956 VYMSEPLDRPKELE 969



 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 37/300 (12%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358
           QI   +Y            +  + R+A  LA+ E E E     F++ L  F F+ +    
Sbjct: 11  QIWNMKYRFKTEDGGDASVEDSWRRIARALAVLEAEPEVWEDRFFHALEDFKFLPAGRIT 70

Query: 359 FNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
             +GT     L +CF+  TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G
Sbjct: 71  AGAGTARKVTLFNCFVMGTVPDDMGGIFDNLREAALTMQQGGGIGYDFSTIRPKGAEVKG 130

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +  + G + F+ V +     +   G R+GA+ A +   H D+E F+  +     D  R 
Sbjct: 131 VSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPARL 186

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +  I D FM+ V  +  W L                                 +V
Sbjct: 187 RMFNLSVLITDAFMEAVKADGPWDLVFG-----------------------------GRV 217

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT--EITLNSSS 594
           +  + A  LW +++   ++   P + F D  N  +   +   + ++N C   E  + +  
Sbjct: 218 YHTVQARDLWNRIMQATYDYAEPGVIFIDRINAANNLSYCETIAATNPCVTAETWVMTDE 277


>gi|126461930|ref|YP_001043044.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103594|gb|ABN76272.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 1218

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 128/723 (17%), Positives = 240/723 (33%), Gaps = 122/723 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V +  L +K  R+                ++ +  +    ++   V        + +
Sbjct: 47  WSQVASDVLAQKYFRKA----------GVPARLKRVKEKGVPDFLWRSVPDEAELAKLPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +        +   D              YF     +R          +A  +A   +  
Sbjct: 97  EERFVGETSARQVFDRLAGAWAYWGWKGGYFSTEADARAY-YDEMRHMLARQMAAPNSP- 154

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTVPD--- 378
                +++N    + +    P+  +              S   HPQ  +CF+ +V D   
Sbjct: 155 -----QWFNTGLHWAYGIDGPSQGHFYVDHATGKLQKSDSAYEHPQPHACFIQSVQDDLV 209

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +  GI       A L KY  G G +++ +RG G  + G  GKS G++ FLK+ +  A A+
Sbjct: 210 NEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG-GGKSSGLMGFLKIGDRAAGAI 268

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-----------RRRTHDMNTAN--- 483
             G   R+ A     +  H D+E+F++ +                   + +D+  A    
Sbjct: 269 KSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQKVASLVAGSKQHEAKLNDIFAAIRSF 328

Query: 484 --------------------------WIPDLFMKRVTQ--------------NAGWTLFS 503
                                      IP+ ++ RV Q              +  W   +
Sbjct: 329 DGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINRVLQYARQGFSSIEFPTYDTDWDSEA 388

Query: 504 PDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              VS  +         A+              R + KV + I A  LW ++    +   
Sbjct: 389 YTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRTDGKVAKTIKARELWDQVGHAAWACA 448

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P I F D  N        G +  SN C+E        +   CNL S+NLL  F   +FD
Sbjct: 449 DPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMF----LDDTACNLASMNLLTFFEAGRFD 504

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +      R     L+  + +     ++  + ++  R +GLG       L  + + Y S 
Sbjct: 505 AEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGLGYDSC 564

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI----------- 726
           E   +       ++  + + S E+A E GA+S ++ +         +             
Sbjct: 565 EGRALCGALSAIMTGVSYATSAEMAGELGAFSGYERNAAHMLRVIRNHRTAAHGHTTGYE 624

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
                   L      +  +   ++  WDE  +  +  G RN+    IAPT TI  +    
Sbjct: 625 GVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGEAHGYRNAQVTVIAPTGTIGLVMDCD 684

Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIE 835
           +  I+P +  + + K    G F ++N  +   L+        +   + Y    G++ N  
Sbjct: 685 TTGIEPDFALVKFKKLAGGGYFKIINRSVPAALETLGYASAQISQIVAYAVGHGTLANCP 744

Query: 836 RIP 838
            I 
Sbjct: 745 TIS 747



 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 42/146 (28%), Gaps = 11/146 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L+        + +   +  G+  +     +  +   +   A          +     I
Sbjct: 805 DLLRHLGFTRAQIEAANDHVCGTMTLEGAPHLKAEHLPVFDCANPCGKKGKRYLSVESHI 864

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q +I  A S  + +    +  +    Y  +  +G+K     R  S  S   ++ 
Sbjct: 865 HMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQPLASA 924

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
              D +     +        ++ +  
Sbjct: 925 LVEDDEEAEEILATGTPQEKAIVLAE 950


>gi|221638914|ref|YP_002525176.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides KD131]
 gi|221159695|gb|ACM00675.1| Ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides KD131]
          Length = 1218

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 129/723 (17%), Positives = 240/723 (33%), Gaps = 122/723 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V +  L +K  R+                ++ +  +    ++   V        + +
Sbjct: 47  WSQVASDVLAQKYFRKA----------GVPARLKRVKEKGVPDFLWRSVPDEAELAKLPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +        +   D              YF     +R          +A  +A   +  
Sbjct: 97  EERFVGETSARQVFDRLAGAWAYWGWKGGYFSTEADARAY-YDEMRHMLARQMAAPNSP- 154

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTVPD--- 378
                +++N    + +    P+  +              S   HPQ  +CF+ +V D   
Sbjct: 155 -----QWFNTGLHWAYGIDGPSQGHFYVDHATGKLQKSDSAYEHPQPHACFIQSVQDDLV 209

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +  GI       A L KY  G G +++ +RG G  + G  GKS G++ FLK+ +  A A+
Sbjct: 210 NEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG-GGKSSGLMGFLKIGDRAAGAI 268

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-----------RRRTHDMNTAN--- 483
             G   R+ A     +  H D+E+F++ +                   + +D+  A    
Sbjct: 269 KSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQKVASLVAGSKQHEAKLNDIFAAIRSF 328

Query: 484 --------------------------WIPDLFMKRVTQ--------------NAGWTLFS 503
                                      IP+ ++ RV Q              +  W   +
Sbjct: 329 DGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINRVLQYARQGFSSIEFPTYDTDWDSEA 388

Query: 504 PDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              VS  +         A+              R + KV + I A  LW ++    +   
Sbjct: 389 YTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRTDGKVAKTIKARELWDQVGHAAWACA 448

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P I F D  N        G +  SN C+E        +   CNL S+NLL  F   +FD
Sbjct: 449 DPGIQFHDTVNAWHTCPEDGPIRGSNPCSEYMF----LDDTACNLASMNLLTFFEAGRFD 504

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +      R     L+  + +     ++  + ++  R +GLG       L  + + Y S 
Sbjct: 505 AEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGLGYDSC 564

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI----------- 726
           E   +       ++  A + S E+A E GA+S ++ +         +             
Sbjct: 565 EGRALCGALSAIMTGVAYATSAEMAGELGAFSGYERNAAHMLRVIRNHRTAAHGHTTGYE 624

Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
                   L      +  +   ++  WDE  +  +  G RN+    IAPT TI  +    
Sbjct: 625 GVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGEAHGYRNAQVTVIAPTGTIGLVMDCD 684

Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIE 835
           +  I+P +  + + K    G F ++N  +   L+        +   + Y    G++ N  
Sbjct: 685 TTGIEPDFALVKFKKLAGGGYFKIINRSVPAALETLGYASAQISQIVAYAVGHGTLANCP 744

Query: 836 RIP 838
            I 
Sbjct: 745 TIS 747



 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 42/146 (28%), Gaps = 11/146 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L+        + +   +  G+  +     +  +   +   A          +     I
Sbjct: 805 DLLRHLGFTRAQIEAANDHVCGTMTLEGAPHLKAEHLPVFDCANPCGKKGKRYLSVESHI 864

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q +I  A S  + +    +  +    Y  +  +G+K     R  S  S   ++ 
Sbjct: 865 HMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQPLASA 924

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
              D +     +        ++ +  
Sbjct: 925 LVEDDEEAEEILATGTPQEKAIVLAE 950


>gi|83953823|ref|ZP_00962544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfitobacter sp. NAS-14.1]
 gi|83841768|gb|EAP80937.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sulfitobacter sp. NAS-14.1]
          Length = 1217

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 114/577 (19%), Positives = 200/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 167 YYVDYKSGKLTRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 227 FSSLRAAGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 285

Query: 463 LDLR--------------KNTGDDRRRTHDMNTA-------------------------- 482
           ++ +              K    +  +      A                          
Sbjct: 286 INWKVIEEQKVASIVAGSKMHERELNKLFAAIKAWDGAEADAYDPAKNDQLKAAIRSAKK 345

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             IP+ ++KRV                +  W   +   VS  +         A+ +   +
Sbjct: 346 CAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEK 405

Query: 529 ADRGE------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               E       +V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 406 DADWELLDRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFLQDGEFMVEDYMHASRLWTVTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A
Sbjct: 522 SKEIAQRSYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEMA 581

Query: 703 QERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            E GA+                      G+        +  + L      +  +   +  
Sbjct: 582 GELGAFPGHAKNADHMLRVIRNHRNAAHGNTDGYEALSVKPVPLDHANCPQANLIDIATA 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 TWDEALRLGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    G+IGN   I
Sbjct: 702 NQSVPAALEKLGYGSAQIEEIVGYAVGHGTIGNAPAI 738



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + LK      + + +   +  G+  +     +  +   I   A          + 
Sbjct: 792 NDPTFDLLKSLGFSKKDIEAANDHVCGTMTLEGAPHLKPEHYGIFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VNSHIYMMAAAQSFISGAISKTINMPNDATIEDCQNAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             ++    D    A  +    +   +  +  
Sbjct: 912 PLASALVEDDDEAAETLESGTTHEKATVLAE 942


>gi|83942582|ref|ZP_00955043.1| ribonucleotide-diphosphate reductase alpha subunit [Sulfitobacter
           sp. EE-36]
 gi|83846675|gb|EAP84551.1| ribonucleotide-diphosphate reductase alpha subunit [Sulfitobacter
           sp. EE-36]
          Length = 1217

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 113/577 (19%), Positives = 198/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 167 YYVDYKSGKLTRSTSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 227 FSSLRAAGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 285

Query: 463 LDLR--------------KNTGDDRRRTHDMNTA-------------------------- 482
           ++ +              K    +  +      A                          
Sbjct: 286 INWKVIEEQKVASIVAGSKMHERELNKLFAAIKAWDGAEADAYDPAKNDQLKAAIRSAKK 345

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             IP+ ++KRV                +  W   +   VS  +         A+ +   +
Sbjct: 346 CAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLHAVEK 405

Query: 529 ADRGE------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               E       +V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 406 DADWELLDRTTGRVSKTIRARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFLQDGEFMVEDYMHASRLWTVTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A
Sbjct: 522 SKEIAQRSYDFRTLGLGYANIGGLLMNMGFSYDSDEGRALCGALTAIMTGVSYATSAEMA 581

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA+     +         +                     L      +  +   +  
Sbjct: 582 GELGAFPGHAKNADHMLRVIRNHRNAAHGKTDGYEALSVKPVPLDHANCPQANLIDIATA 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 TWDEALRLGEKHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    G+IGN   I
Sbjct: 702 NQSVPAALEKLGYGSAQIEEIVGYAVGHGTIGNAPAI 738



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + LK      + + +   +  G+  +     +  +   I   A          + 
Sbjct: 792 NDPTFDLLKSLGFSKKDIEAANDHVCGTMTLEGAPHLKPEHYGIFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VNSHIYMMAAAQSFISGAISKTINMPNDATIEDCQNAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             ++    D    A  +    +   +  +  
Sbjct: 912 PLASALVEDDDEAAETLESGTTHEKATVLAE 942


>gi|302793901|ref|XP_002978715.1| hypothetical protein SELMODRAFT_109248 [Selaginella moellendorffii]
 gi|300153524|gb|EFJ20162.1| hypothetical protein SELMODRAFT_109248 [Selaginella moellendorffii]
          Length = 211

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 36/229 (15%)

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
           +  + R  W   K+ V   G+RNS  +A  PTA+ + I G ++  +P   N+Y +  +SG
Sbjct: 4   VIPSGRWDWPASKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSG 63

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
           +F VVN  L+N+L    +W   +   +                      T +EI     +
Sbjct: 64  EFVVVNKHLLNDLTDLGIWTPDLNIQVGL--------------------TVWEIKQ---V 100

Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916
           + A  R  +IDQ+QSLN+++++P+  KL  ++  AW  GLKT  YYLRS++A    K T+
Sbjct: 101 DMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTV 160

Query: 917 KGVDGKLNAVPV------------TDPNSSTHSLGIPSSCTSDTECEVC 953
                K+                     +      +  S  +   C  C
Sbjct: 161 DTASLKVGLFSTVLSSHLFCTRVLQSQPTEELLAQMVFSLENRENCLAC 209


>gi|126726388|ref|ZP_01742229.1| ribonucleotide-diphosphate reductase alpha subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126704251|gb|EBA03343.1| ribonucleotide-diphosphate reductase alpha subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 1236

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 201/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+    D+     GI       A L KY  G G +
Sbjct: 175 HYVDYKTGVLTKSTSSYEHPQPHACFIQGCSDNLVNDGGIMDLWMREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ VRG G  + G  GKS G++ FLK+ +  A ++  G   R+ A    ++  H DV+EF
Sbjct: 235 FSHVRGNGEKLSG-GGKSSGLMDFLKIGDRAAGSIKSGGTTRRAAKMVIVDVDHPDVQEF 293

Query: 463 LDLRKNTGDDRR------RTHDMNTA---------------------------------- 482
           ++ +              + H                                       
Sbjct: 294 INWKVIEEQKVASIVAGSKMHKEKLGEIFDAIRVWDGKIEDATDPKANDALKSAIRAAKK 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++ RV Q              +  W   +   VS  +         A+ +    
Sbjct: 354 VAIPETYVNRVLQYARQGYTSIEFTTYDTDWDSEAYSSVSGQNSNNTVRVTDAFLDAVKN 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + KV + ISA  LW ++    +    P I + D  N        G +  S
Sbjct: 414 DADWDLTNRTDGKVKKTISARELWEQIGHAAWACADPGIQYHDTINAWHTCPEDGEIRGS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  + + +FD        R     L+  + +    
Sbjct: 474 NPCSEYMF----LDDTACNLASMNLLTFYNDKKFDTAAYMHASRLWAITLEISVMMAQFP 529

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   I       +   + + S E+A
Sbjct: 530 SKEIAQRSYETRTLGLGFANLGGLLMNMGYSYDSDEGRAICGALTAIMCGVSYATSAEMA 589

Query: 703 QERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRL 744
           +++G +  +K +         +                     L A    +  M   +R 
Sbjct: 590 KDQGPFEKYKVNEKHMLRVMRNHHRAVHSKTDGYEGLNMAPVPLDAANCPDQDMVDMARA 649

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++
Sbjct: 650 SWDEALALGEKHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 709

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L+ +      +   + Y    G++GN   I
Sbjct: 710 NRSVPGALEAQGYSSSQIEEIISYAVGHGTLGNAPDI 746



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 11/164 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + +  +      +N    + L+        + +   +  G+  + N   + ++   I   
Sbjct: 787 FCRDVLGIPQEKLNDPGFDLLRSLGFTRAQIDAANDHVCGTMTLENAPFLKEEHMSIFDC 846

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q ++  A S  + + ++ + +     Y  +W +GLK
Sbjct: 847 ANPCGKKGKRFLSVNSHITMMAAAQPFLSGAISKTINMPNDATIEDCQEAYEYSWSLGLK 906

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                R  S  S   +     D    A  +   ++   +  +  
Sbjct: 907 ANALYRDGSKLSQPLAASLVEDDDDAAEILETGSNHEKAAVLAE 950


>gi|332557931|ref|ZP_08412253.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides WS8N]
 gi|332275643|gb|EGJ20958.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides WS8N]
          Length = 1218

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 129/723 (17%), Positives = 242/723 (33%), Gaps = 122/723 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V +  L +K  R+                ++ +  +    ++   V        + +
Sbjct: 47  WSQVASDVLAQKYFRKA----------GVPARLKRVKEKGVPDFLWRSVPDEAELAKLPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335
            +        +   D              YF     +R          +A  +A   +  
Sbjct: 97  EERFVGETSARQVFDRLAGAWAYWGWKGGYFSTEADARAY-YDEMRHMLARQMAAPNSP- 154

Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTVPD--- 378
                +++N    + +    P+  +              S   HPQ  +CF+ +V D   
Sbjct: 155 -----QWFNTGLHWAYGIDGPSQGHFYVDHATGKLQKSDSAYEHPQPHACFIQSVQDDLV 209

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +  GI       A L KY  G G +++ +RG G  + G  GKS G++ FLK+ +  A A+
Sbjct: 210 NEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG-GGKSSGLMGFLKIGDRAAGAI 268

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-----------RRRTHDMNTAN--- 483
             G   R+ A     +  H D+E+F++ +                   + +D+  A    
Sbjct: 269 KSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQKVASLVAGSKQHEAKLNDIFAAIRSF 328

Query: 484 --------------------------WIPDLFMKRVTQ--------------NAGWTLFS 503
                                      IP+ ++ RV Q              +  W   +
Sbjct: 329 DGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINRVLQYARQGFSSIEFPTYDTDWDSEA 388

Query: 504 PDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              VS  +         A+              R + KV + I A  LW ++    +   
Sbjct: 389 YTTVSGQNSNNSVRVTDAFLQAVKDDADWALVRRTDGKVAKTIKARELWDQVGHAAWACA 448

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P I F D  N        G +  SN C+E        +   CNL S+NLL  F   +FD
Sbjct: 449 DPGIQFHDTVNAWHTCPEDGQIRGSNPCSEYMF----LDDTACNLASMNLLTFFEAGRFD 504

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            +      R     L+  + +     ++  + ++  R +GLG       L  + + Y S 
Sbjct: 505 AEGYVHATRLWTVTLEISVMMAQFPSKEIAQLSYDFRTLGLGYANIGGLLMNMGLGYDSC 564

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFK-------------GSLWDQGVFPID 724
           E   +       ++  A + S E+A E GA+S ++              +         +
Sbjct: 565 EGRALCGALSAIMTGVAYATSAEMAGELGAFSGYERNAGHMLRVIRNHRTAAHGHTTGYE 624

Query: 725 SIGLLAEVRDELAMNRT-----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778
            + +     D++          ++  WDE  +  +  G RN+    IAPT TI  +    
Sbjct: 625 GVNVSPVALDQVNCPDPRLVALAKSSWDEALRLGEAHGYRNAQVTVIAPTGTIGLVMDCD 684

Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIE 835
           +  I+P +  + + K    G F ++N  +   L+        +   + Y    G++ N  
Sbjct: 685 TTGIEPDFALVKFKKLAGGGYFKIINRSVPAALETLGYASAQISQIVAYAVGHGTLANCP 744

Query: 836 RIP 838
            I 
Sbjct: 745 TIS 747



 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 42/146 (28%), Gaps = 11/146 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L+        + +   +  G+  +     +  +   +   A          +     I
Sbjct: 805 DLLRHLGFTRAQIEAANDHVCGTMTLEGAPHLKAEHLPVFDCANPCGKKGKRYLSVESHI 864

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q +I  A S  + +    +  +    Y  +  +G+K     R  S  S   ++ 
Sbjct: 865 HMMAAAQSFISGAISKTINMPNSATIAETLAAYELSHSLGIKANALYRDGSKLSQPLASA 924

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
              D +     +        ++ +  
Sbjct: 925 LVEDDEEAEEILATGTPQEKAIVLAE 950


>gi|306843914|ref|ZP_07476509.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO1]
 gi|306275669|gb|EFM57393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO1]
          Length = 1260

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPESERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDALAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|254437550|ref|ZP_05051044.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
 gi|198252996|gb|EDY77310.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
          Length = 1223

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 121/577 (20%), Positives = 204/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 167 HYVDYKTGKLTASKSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G ++ G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF
Sbjct: 227 FSSLRASGENLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEF 285

Query: 463 LDLRKNTGD--------------------DRRRTHDMNTAN------------------- 483
           ++ +                         D  +  D   A+                   
Sbjct: 286 INWKVLEEQKVASIVAGSKMHEQKLNLIFDAIKGWDGAEADAYDPKINPQLKDAVREAKK 345

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   + + VS  +         A+      
Sbjct: 346 VCIPETYVKRVLDYARQGHTAIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLKAVED 405

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               +  +R   +V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 406 DANWKLINRKNGEVAKVIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  F +  F  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLKFFKDGAFQVEDYMHASRLWTVTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + +   R +GLG       L  +   Y S E   +A      ++  + + S E+A
Sbjct: 522 SKEIAQRSFDFRTLGLGYANIGGLLMNMGFGYDSDEGRSMAGALTAIMTGVSYATSAEIA 581

Query: 703 QERGAYSSFKGSL----------------WDQGVFPID--SIGLLAEVRDELAMNRTSRL 744
            E GA+S +K +                    G   +D   + L      E  +   +  
Sbjct: 582 GELGAFSGYKRNKEHMLKVIRNHRNAAYGASDGYEKLDIKPVPLDHANCPEARLIDIAMS 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 TWDEALRLGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L +             Y    GS+GN   I
Sbjct: 702 NQSVPAALAKLGYSTSQAEEIQAYAVGHGSLGNAPGI 738



 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 11/155 (7%)

Query: 803 NSFLVNELKQRDLWDEA--MISDLKYHDGSIGNIERIPDDLKKIHATAF--------EID 852
           N    + LK      E   + +D      ++     + ++   +   A          + 
Sbjct: 792 NDPTFDLLKSLGFSKEDTDLANDHVCGTMTLEGAPHLKEEHYVVFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VNSHIYMMASAQSFISGAISKTINMANSATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             +     D +  A  + + N    +  I      
Sbjct: 912 PLAAALIEDDEEAADILENGNIHAKAQVIAEKIIE 946


>gi|161618992|ref|YP_001592879.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis
           ATCC 23365]
 gi|161335803|gb|ABX62108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella canis ATCC 23365]
          Length = 1264

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 262/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAY------ENYERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +      +       R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDCDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|265984108|ref|ZP_06096843.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|264662700|gb|EEZ32961.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
          Length = 1261

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDALAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|254719117|ref|ZP_05180928.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           83/13]
 gi|306838401|ref|ZP_07471246.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. NF 2653]
 gi|306406541|gb|EFM62775.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. NF 2653]
          Length = 1264

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDALAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|27379385|ref|NP_770914.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|81737311|sp|Q89MB9|NRDJ_BRAJA RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|27352536|dbj|BAC49539.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bradyrhizobium
           japonicum USDA 110]
          Length = 1254

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 138/761 (18%), Positives = 253/761 (33%), Gaps = 152/761 (19%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
            +++V +  L +K  R+                ++ +  E    ++   V        + 
Sbjct: 46  EWSQVASDVLAQKYFRKA----------GVAARLKKVEEESVPSFLWRSVPDTEALSQLP 95

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI---EMPQAFF----MRVAMG 327
           + +        K   D               +    G      E  QAF+      +AM 
Sbjct: 96  EKERYVSELSAKQVFDRLAGC--------WTYWGWKGGYFTNDEDAQAFYDELRYMLAMQ 147

Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFL 373
           +    +       +++N    + +    P   +              S   HPQ  +CF+
Sbjct: 148 MVAPNSP------QWFNTGLHWAYGIDGPGQGHYYVDPFTGKLTKSKSAYEHPQPHACFI 201

Query: 374 TTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
             V D   +  GI       A L KY  G G++++ +RG G  + G  G+S G++ FLK+
Sbjct: 202 QGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG-GGRSSGLMSFLKI 260

Query: 431 ANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL------------------------ 465
            +  A A+  G   R+ A    ++  H D+E ++D                         
Sbjct: 261 GDRAAGAIKSGGTTRRAAKMVVVDVDHPDIETYIDWKVKEEQKVAALVTGSKINQKHLKA 320

Query: 466 -------RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ-------------- 495
                   + +GDD          RR   +   + +PD ++KRV Q              
Sbjct: 321 VLKACVNCEGSGDDCFDPEKNPALRREIKLARRSLVPDNYIKRVIQFAKQGYKDIQFDVY 380

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKM 549
           +  W   +   VS  +       +  +              R   KV + + A  LW K+
Sbjct: 381 DTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLNARTSKKVTKTLKARDLWEKI 440

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
               + +  P + F    N     +  G + +SN C+E        +   CNL S NLL 
Sbjct: 441 GYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF----LDDTACNLASANLLT 496

Query: 610 HFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
            +      FD +      R    VL+  + +     +   + ++  R +GLG       L
Sbjct: 497 FYNVATKHFDVEGYEHLCRLWTVVLEISVMMAQFPSKAIAELSYEFRTLGLGYANIGGLL 556

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------L 715
             + +PY S E   +       ++      S E+A E G +  +K +             
Sbjct: 557 MTMGLPYDSKEGRALCGALTAVMTGITYKTSAEIAAELGTFPGYKKNAAHMLRVIRNHRR 616

Query: 716 WDQGVFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
              G         ++ + L      +  +   ++  WD   +  +  G RN+    IAPT
Sbjct: 617 AAHGQSNGYEALSVNPVPLDLVSCPQADLVSHAQAAWDAALELGEKHGYRNAQTTVIAPT 676

Query: 770 ATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
            TI  +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y 
Sbjct: 677 GTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPAALRALGYRESEIAEIEAYA 736

Query: 828 --DGSIGNIERI-----------PDDLKKIHA---TAFEID 852
              GS+ N   I            + + K+     TAF+I 
Sbjct: 737 VGHGSLSNAPGINASTLKAKGFTDEAIAKVEKALPTAFDIK 777



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 48/168 (28%), Gaps = 13/168 (7%)

Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHA 846
           +++  +  G   +      + L+        + +   +  G  ++     +  +   +  
Sbjct: 789 FIRDQLGIGAEAIAAPGF-DLLQAVGFTKREIEAANVHICGAMTVEGAPHLKAEHYPVFD 847

Query: 847 TAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
            A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + L
Sbjct: 848 CANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLAL 907

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           K     R  S  S   ++    D +     V        +        
Sbjct: 908 KANALYRDGSKLSQPLNSQLIADDEDEDDAVESLYEKPMAARTAQVSE 955


>gi|295695122|ref|YP_003588360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Bacillus tusciae DSM 2912]
 gi|295410724|gb|ADG05216.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Bacillus tusciae DSM 2912]
          Length = 1483

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 39/319 (12%)

Query: 618  YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++ L  T+RT VR  D VID   +  E+ +++    R +GLG+MG    L    + Y S 
Sbjct: 969  WEALEETVRTGVRFQDAVIDATYYPFEENRENQLGERRVGLGIMGLHDLLIHCGVRYGSE 1028

Query: 678  EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            E+  + D  +  ++  +   SVELA+E G +  F+   +         +  +A  R  + 
Sbjct: 1029 ESTRLIDVLIGMMAEWSYLESVELAKENGPFPRFETEKF----LQSGYMRHMAAERPHV- 1083

Query: 738  MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                         + ++  G+RN   M IAPT T   + G S   +P Y   Y +++  G
Sbjct: 1084 ------------VEAIRKYGVRNVTTMTIAPTGTTGTMVGCSTGCEPYYAWSYFRNSRLG 1131

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
             F   N+ +V++              L  H G+        + L     TA E+ P   +
Sbjct: 1132 MFEE-NAQIVDDY-------------LALHPGADR------EHLPDYFVTAMELTPEEHV 1171

Query: 858  ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKST 915
               +  QKWID + S      E  + +    +Y  A+ +G K     R  S +  V   +
Sbjct: 1172 RVQAALQKWIDSSISKTCNAPESYTVEDTKQLYDLAYDLGCKGVTIYRDGSRSEQVLALS 1231

Query: 916  LKGVDGKLNAVPVTDPNSS 934
               +  +   V       +
Sbjct: 1232 EDKLKKEGAGVGEGAQTGT 1250



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 39/238 (16%)

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS-SCFLT 374
            P+  + R+A G A    +       FY L S + ++       + GT     S +CF+ 
Sbjct: 95  SPREMWRRIAKGAAAVTKDPALWEERFYQLQSGWKYVPGGRINASMGTGFQTTSYNCFVI 154

Query: 375 T-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             V   L     +  +   +   SGG+G + + +   G+ I  + G              
Sbjct: 155 PSVGPRLRDYAKSFGQTLEIQARSGGVGMNLSRIPPRGSLIPVSKG-------------- 200

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
                     R+  +   L+ WH D+ +FL           R         +   F++ V
Sbjct: 201 ---------PRRSHLQLVLDVWHPDLFDFLQEAYPHSTKVVR---------VNRAFLQAV 242

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551
              A WT   PD   +    Y   ++     + +Q     +K    + A+ ++ K+L 
Sbjct: 243 EDRADWTFVFPDSSFEG---YDDLWDGDLAKWMKQ--DLPVKYGTTVPALTVYDKILE 295



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 34/235 (14%)

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           +    D    I   L +               + +R    ++ G NG+S G   +  + +
Sbjct: 308 VLVPGDSRGTIAETLGDMWEEMARGRRTAVILSSLRPRYTYVKGVNGRSSGAYSWGILYD 367

Query: 433 DT--------------------AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
                                      QGG R+GA+   L   H D+  F+  ++  G  
Sbjct: 368 KGNQVFGDGFGPVGVGEIMSVGCQLTLQGGSRRGALMLILNDRHADLHRFIQAKQVEG-- 425

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD-EVSDLHDLYGKEFEIAYENYERQADR 531
                  N +  I + FM+   +   W+L  P  E  D  D     +E         A  
Sbjct: 426 --VITGANVSVGISEEFMQVKQRGGDWSLGFPRMEEMDEFDGDFGRWE---------ATG 474

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            ++ V   + A  LW +++T  +++  P + F    N  S   +   + ++N C 
Sbjct: 475 RKLVVTETLPAEELWEEIITSAWKSAEPGVVFLGRYNAMSNSWYYNPIIATNPCF 529


>gi|297622329|ref|YP_003703763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Truepera radiovictrix DSM 17093]
 gi|297163509|gb|ADI13220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Truepera radiovictrix DSM 17093]
          Length = 1236

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 135/365 (36%), Gaps = 59/365 (16%)

Query: 598  AVCNLGSINLLAHFANNQFD---YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              C+LG+INL A+      +   +D     +RT VR LDNV+++N   +E  +  +   R
Sbjct: 762  EPCDLGAINLAAYVTGEGLENFAWDAFREDVRTCVRFLDNVLEVNRFALEDNRAMSMKLR 821

Query: 655  AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
             +GLG+MG   AL  L   Y + E     +  +  +   A  AS  LA+ERGA+  F  S
Sbjct: 822  RLGLGIMGLADALIKLGYRYDTDEGRAAVEAIITAMRESATEASRALAEERGAFPEFGKS 881

Query: 715  LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                                                        RN   + +APT T + 
Sbjct: 882  S--------------------------------------LKTPRRNVALLTVAPTGTTSM 903

Query: 775  ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---------RDLWD-EAMISDL 824
            + GVS  ++P +     +        ++       L+Q            WD E ++  +
Sbjct: 904  LMGVSSGVEPIFAPFIYRKIGDTYAALIAPLFKEMLEQHPPHPDYEHEGAWDWERVVEAV 963

Query: 825  KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID-------QAQSLNLYL 877
            + + GS+  +  IP+ +K++   A +I P   ++     Q+  D        + S  + L
Sbjct: 964  QANHGSVQGLAFIPEAVKRVLVCAHDIAPEDHVKMQGAVQRAFDAGGEMVANSISKTINL 1023

Query: 878  DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
                +   +   Y  A+ +G K     R  S      ST KG   K +A     P     
Sbjct: 1024 PNKATVADVYSAYSMAFDVGCKGITVYRDGSRQFQVLSTSKGASEKQDAATPPAPARPER 1083

Query: 937  SLGIP 941
              G P
Sbjct: 1084 LPGEP 1088



 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 72/273 (26%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            Y  L    +                 S+  +T V D +  I+ +  E+         + 
Sbjct: 162 TYMDLVHGKYTTKGYRCAQFLEPDEVPSALHVTAVGDSVESIWQSAGESVTKLLAGEDVL 221

Query: 402 NDWTPVRGLGAHIHGT-------------------------NGKSQGVIPFL-KVANDTA 435
            D + +R  G  + G+                              G +  L  +   T 
Sbjct: 222 LDLSKLRAEGTPVKGSGGNSSGPSSFAVEVFDNFALWASLGGAAHAGPVATLRYIFAPTL 281

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVT 494
             + QGG R+GA  A L   H D+E+F+  +  + +         N +  + D FM+R  
Sbjct: 282 RVIRQGGTRRGAGMATLSVTHPDIEDFITCKDLSREQTEGDISTFNISVLVSDAFMERA- 340

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
                                                      ++  +  + + +    +
Sbjct: 341 -------------------------------------------KRTLSSGVLQDIADHAW 357

Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCT 586
           +TG P + F D  N  +P +  +G + ++N C 
Sbjct: 358 QTGEPGLIFIDRINAFNPMRESLGEIKATNPCV 390



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFH 350
           F+   + I   +YF   +   +      F RVA  +A  E   E+ +    FY+L+ S  
Sbjct: 15  FDEHAVAIAKRQYFQPGDEDVL----GMFRRVAAWVASPEAEGERSRYEARFYDLMVSKR 70

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG----IFGALQENAMLAKYSGGLGNDWTP 406
           F      L  + T H  + +CF+     ++ G    +     + A++ K  GG G    P
Sbjct: 71  FCPGGRVLAGAATGHGNVLNCFVQDGSPEVVGTDAWVIRLATKLALVTKVGGGNGLCLDP 130

Query: 407 VRGLGAHIHGTN 418
           +           
Sbjct: 131 LPPKRPFTRPVG 142


>gi|84503411|ref|ZP_01001471.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola batsensis HTCC2597]
 gi|84388198|gb|EAQ01150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola batsensis HTCC2597]
          Length = 1216

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 141/774 (18%), Positives = 256/774 (33%), Gaps = 133/774 (17%)

Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220
           ++E    +A         + V + +     DG     L+   + +S         +++V 
Sbjct: 2   KIERKFTKAGQD-AYADVEFVTTSSEIRNPDGTIVFKLDDCEVPAS---------WSQVA 51

Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD----F 276
           +  + +K  R+                ++ +  +    ++   V      E+  +     
Sbjct: 52  SDVIAQKYFRKA----------GVPASLKKVREKNVPEFLWRSVADGEEVETGGETSARQ 101

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALKE 332
               LA          + Y G +     YF     +R    +  +M    R A       
Sbjct: 102 VFDRLAGA--------WTYWGWK---GGYFSSEEDARAYFDEMRYMLATQRAAPNSPQWF 150

Query: 333 TEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGA 386
                 A          +++       T   S   HPQ  +CF+ +V DD     GI   
Sbjct: 151 NTGLHWAYGIDGPSQGHYYVDHVTGKLTKSKSAYEHPQPHACFIQSVGDDLVGDGGIMDL 210

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRK 445
               A L KY  G G +++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+
Sbjct: 211 WVREARLFKYGSGTGTNFSSLRAEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRR 269

Query: 446 GAVCAYLETWHIDVEEFLDLR------------------------------KNTGDDRRR 475
            A    ++  H D+EE+++ +                               +  ++   
Sbjct: 270 AAKMVIVDADHPDIEEYINWKVKEEQKVASIVAGSKMHERCLNAIFKAIRTWDGTEEGAY 329

Query: 476 THDMNTANW----------IPDLFMKRVTQ--------------NAGWTLFSPDEV---- 507
             + N A            IP+ ++KRV                +  W   +   V    
Sbjct: 330 DPNENDALKTAVREAKKSAIPETYIKRVLDYAKQGYASIEFPTYDTDWDSEAYASVSGQN 389

Query: 508 SDLHDLYGKEFEIAYEN--YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
           S+        F  A EN        R +  V + I A  LW  +    +    P I + D
Sbjct: 390 SNNSVRVTDAFLKAVENDGDWELIRRTDGSVAKTIKARDLWETIGHAAWACADPGIQYHD 449

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             N        G +  SN C+E        +   CNL S+NLL    +  F  +      
Sbjct: 450 TVNAWHTCPEDGAIRGSNPCSEYMF----LDDTACNLASMNLLTFLEDGVFQAEDYVHAT 505

Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
           R     L+  + +     ++  + ++  R +GLG       L  + + Y S E   +A  
Sbjct: 506 RLWTITLEISVLMAQFPSQEIAQRSYDFRTLGLGYANIGGLLMNMGLGYDSDEGRAMAGA 565

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG------------------ 727
               ++  + + S E+A E G +  +K +         +                     
Sbjct: 566 LTAIMTGVSYATSAEMAGELGTFPGYKRNAEHMLRVIRNHRNAAYGRTDGYEQLAVKPVA 625

Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSY 786
           L      +  +   ++  WDE  +  +  G RN+    IAPT TI  +    +  I+P +
Sbjct: 626 LDHANCPDGKLVDLAKTSWDEALRLGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDF 685

Query: 787 QNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
             + + K    G F ++N  +   L++       +   + Y    GSIGN   I
Sbjct: 686 ALVKFKKLAGGGYFKIINRSVPAALEKLGYGSAQIEEIISYAVGHGSIGNAPAI 739



 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 11/164 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + K  +      +N    + L+      + + +   +  G+  +     +  +   +   
Sbjct: 780 FCKKTLGIPAEKLNDPGFDLLRHLGYTRKEIEAANDHVCGTMTLEGAPYLNPEHLVVFDC 839

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K
Sbjct: 840 ANPCGKKGKRFLSTESHITMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGIK 899

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
                R  S  S   ++    D    A  +   +S   +  +  
Sbjct: 900 ANALYRDGSKLSQPLASALVEDDDDAAEVLESGSSHEKAAVLAE 943


>gi|110633685|ref|YP_673893.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           sp. BNC1]
 gi|110284669|gb|ABG62728.1| ribonucleoside-diphosphate reductase class II [Chelativorans sp.
           BNC1]
          Length = 1258

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 123/596 (20%), Positives = 214/596 (35%), Gaps = 112/596 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSQLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E F+D +    ++ ++ 
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEAFIDWK---VNEEQKV 304

Query: 477 HDMNTANWIP----DLFMKRVTQ-----------------NAGWTLFSPDEVSDLHDLYG 515
             + T + I     D  MK                              + V + +    
Sbjct: 305 AALVTGSKIVRKHLDAIMKACINCEGANDDCFDPAKNPALKREIKAAKKNAVPENYVKRV 364

Query: 516 KEFEIA-YENYERQADRGE----------------------------------------- 533
            +F    Y + E +    +                                         
Sbjct: 365 IQFAKQGYTSIEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGDWTLIRRID 424

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
            K  + I A  LW K+    + +  P + F    N        G + +SN C+E      
Sbjct: 425 GKPGKTIKARDLWEKIGYAAWASADPGLHFNTTMNDWHTSPAAGPIRASNPCSEYMF--- 481

Query: 594 SEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
             +   CNL SINLLA+   + + D +    ++R    VL+  + +     ++  K ++ 
Sbjct: 482 -LDDTACNLASINLLAYRGKDGRIDIEGYEHSVRLWTIVLEISVMMAQFPSKEIAKLSYE 540

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R +GLG       L    IPY S E   I       ++  A + S E+A E GA+  ++
Sbjct: 541 YRTLGLGYANIGGLLMTSGIPYDSDEGRAICGALTAIMTGVAYATSAEMAAELGAFPDYE 600

Query: 713 GSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +         +                     L AE   + A+   +R  WD   +  +
Sbjct: 601 RNADAMLRVMRNHRRAAHGLAEGYERLAVNPVPLKAEDCPDPALTAHARAAWDRALELGQ 660

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQ 812
             G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+ 
Sbjct: 661 KHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRT 720

Query: 813 RDLWDEAMISDLKYH--DGSIGNIERI-PDDLK-------------KIHATAFEID 852
               +  +     Y    G++     + P  LK             +   +AF+I 
Sbjct: 721 LGYSESQIAEIEAYAVGHGNLNQAPGVNPSTLKTKGFTDEKIAALNEALKSAFDIK 776



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLI 857
             L       + + +   +  G  ++     + D+   +   A          +     I
Sbjct: 806 ELLPALGFSRKDIEAANIHVCGAMTLEGAPHLKDEHLPVFDCANPCGKIGKRYLSVESHI 865

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              +  Q +I  A S  + + +E + +     Y  +W + LK     R  S 
Sbjct: 866 RMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSK 917


>gi|254701790|ref|ZP_05163618.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261752346|ref|ZP_05996055.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
 gi|261742099|gb|EEY30025.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 5 str. 513]
          Length = 1261

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVAAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|254714125|ref|ZP_05175936.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
          Length = 1261

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|254704332|ref|ZP_05166160.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|254706767|ref|ZP_05168595.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|256061132|ref|ZP_05451286.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|260566419|ref|ZP_05836889.1| ribonucleotide reductase large subunit [Brucella suis bv. 4 str.
           40]
 gi|261314231|ref|ZP_05953428.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261325135|ref|ZP_05964332.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261755004|ref|ZP_05998713.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
 gi|260155937|gb|EEW91017.1| ribonucleotide reductase large subunit [Brucella suis bv. 4 str.
           40]
 gi|261301115|gb|EEY04612.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           neotomae 5K33]
 gi|261303257|gb|EEY06754.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M163/99/10]
 gi|261744757|gb|EEY32683.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           bv. 3 str. 686]
          Length = 1261

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|254716817|ref|ZP_05178628.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261218618|ref|ZP_05932899.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261321884|ref|ZP_05961081.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
 gi|260923707|gb|EEX90275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M13/05/1]
 gi|261294574|gb|EEX98070.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M644/93/1]
          Length = 1264

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|254710126|ref|ZP_05171937.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|256031621|ref|ZP_05445235.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|261317676|ref|ZP_05956873.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|265988710|ref|ZP_06101267.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
 gi|261296899|gb|EEY00396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis B2/94]
 gi|264660907|gb|EEZ31168.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           pinnipedialis M292/94/1]
          Length = 1261

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|23501921|ref|NP_698048.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           1330]
 gi|256369467|ref|YP_003106975.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
 gi|23347864|gb|AAN29963.1| ribonucleotide reductase domain protein [Brucella suis 1330]
 gi|255999627|gb|ACU48026.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella
           microti CCM 4915]
          Length = 1264

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|294852367|ref|ZP_06793040.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella sp.
           NVSL 07-0026]
 gi|294820956|gb|EFG37955.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella sp.
           NVSL 07-0026]
          Length = 1261

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|288957136|ref|YP_003447477.1| ribonucleoside-diphosphate reductase alpha chain [Azospirillum sp.
           B510]
 gi|288909444|dbj|BAI70933.1| ribonucleoside-diphosphate reductase alpha chain [Azospirillum sp.
           B510]
          Length = 1250

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/621 (19%), Positives = 219/621 (35%), Gaps = 106/621 (17%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGI 383
           GL             FY       F     T   S   HPQ  +CF+ +V D   +  GI
Sbjct: 160 GLHWAYGIDGPSQGHFY-----VDFKTGLLTSSASAYEHPQPHACFIQSVADDLVNEGGI 214

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                  A L KY  G G++++ +RG G  + G  GKS G++ FLK+ +  A A+  G  
Sbjct: 215 MDLWVREARLFKYGSGTGSNFSRLRGEGEKLAG-GGKSSGLMSFLKIGDRAAGAIKSGGT 273

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNT--------------------------------- 469
            R+ A    ++  H D+E ++D + N                                  
Sbjct: 274 TRRAAKMVTVDMDHPDIEGYIDWKVNEEQKVAALVTGSKICQKHLTAVMAAAQSGLDPKE 333

Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFSPDEVS----DLH 511
             + ++       + + + +++RV Q              N  W   +   VS    +  
Sbjct: 334 NKELKKAILAARKDQVSENYIQRVIQFAGQGFTSIEFKTYNTDWDSEAYLTVSGQNSNNS 393

Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
                EF      +       R   KV + + A  LW K+    +    P + F    N 
Sbjct: 394 VRISNEFVQAVLDDADWNLIGRTNGKVVKTVRARDLWDKVGYAAWACADPGVQFDSTINE 453

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTA 628
                  G +++SN C+E        +   CNL S+NL++    +  FD +      R  
Sbjct: 454 WHTCPASGRINASNPCSEYMF----LDDTACNLASLNLMSFRLKDGSFDVEAFEHACRLW 509

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             VL+  + +     ++  + ++  R +GLG       L    + Y S E          
Sbjct: 510 TIVLEISVLMAQFPSKEIAQLSYEFRTLGLGFANLGGLLMASGLSYDSDEGRAYCAGISA 569

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVF------------------PIDSIGLLA 730
            ++  A + S E+AQE G +  F+ +                          ++ +  +A
Sbjct: 570 VMTGVAYATSAEMAQELGTFPGFEANRDHMLRVIRNHRRAANGEMNGYEGLAVEPVPFVA 629

Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL 789
           ++  +  +   +   WDE  +  +  G RN+    +APT TI  +    +  I+P +  +
Sbjct: 630 DLCPDQELALAAVRVWDEALELGEAHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALV 689

Query: 790 -YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI-PDDLKKI 844
            + K    G F +VN  +   LK    +    I  +  +    G++ N   +  + LK  
Sbjct: 690 KFKKLAGGGYFKIVNRLVPEALKTLG-YTPDQIEQIALYAVGHGTLRNAPGVNHEALKAK 748

Query: 845 -------------HATAFEID 852
                          TAF+I 
Sbjct: 749 GFTDELLERLEGNLTTAFDIK 769



 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
           ++     + D+   +   A          +     I   +  Q +I  A S  + +    
Sbjct: 823 TLEGAPFLKDEHLAVFDCANPCGRIGKRFLSWESHITMMAAAQPFISGAISKTINMPNTA 882

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           +  +    Y  +W +GLK     R  S  +   ++ L   +    AV       +     
Sbjct: 883 TVDECKDAYLMSWRLGLKANALYRDGSKLSQPLQAALLDDEEDGEAVEAVIEAPAAVRAQ 942

Query: 940 I 940
           +
Sbjct: 943 M 943


>gi|114769378|ref|ZP_01447004.1| ribonucleotide-diphosphate reductase alpha subunit [alpha
           proteobacterium HTCC2255]
 gi|114550295|gb|EAU53176.1| ribonucleotide-diphosphate reductase alpha subunit [alpha
           proteobacterium HTCC2255]
          Length = 1216

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/577 (21%), Positives = 200/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F        NS   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 173 HYVDFKTGVMVQSNSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTN 232

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG      G  GKS G++ FLK+ +  A A+  G   R+ A     +  H DVEEF
Sbjct: 233 FSSLRGSDES-LGGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDVEEF 291

Query: 463 LDL-----------------------------RKNTGDDRRRTHDMNTAN---------- 483
           +                               R   G +         AN          
Sbjct: 292 ISWKVKEEQKVASLVAGSKLHELKLNEIFSAIRSWDGAEEDAFDPKVNANLKAAVKSAKK 351

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEV----SDLHDLYGKEFEIAYEN 524
             IP+ ++ RV Q              +  W   + + V    S+        F  A +N
Sbjct: 352 VMIPETYVNRVLQYARQGYSSIEFPSYDVDWDSEAYNTVAGQNSNNSVRVTDAFLKAVQN 411

Query: 525 YERQ--ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            E      R + KV + + A  LW  +    +    P + + D  N        G +  S
Sbjct: 412 DEDWELIRRTDGKVSKTVKAKELWEDVGHAAWACADPGVQYHDTINAWHTCPEDGQIRGS 471

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  F + +FD D      R     L+  + +    
Sbjct: 472 NPCSEYMF----LDDTACNLASMNLLKFFKDGEFDADAYMHATRLWTITLETSVLMAQFP 527

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            E   + ++  R +GLG       L  + + Y S E   +       ++  +   S E+A
Sbjct: 528 SEAIARGSYDFRTLGLGYANIGGLLMNMGLSYDSDEGRSMCAALTALMTGISYKTSAEMA 587

Query: 703 QERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           +E G +  +                   G         +  + L A+   +  +   ++ 
Sbjct: 588 KELGPFPGYAKNSQHMLRVMRNHKRAAFGKKAGYEGLEVKPVPLDAKNCPDRNLIDLAKT 647

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            W+E  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 648 SWEEAVQLGEAHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 707

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L             + Y    G++GN   I
Sbjct: 708 NQSVPAALATMGYGSAEAEEIISYAVGHGTMGNAPGI 744



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 12/124 (9%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L       + +     +  G+  +     + ++   +   A          + 
Sbjct: 799 NPTF-DLLSHLGFSKKQIEHANNHVCGTMTLEGAPHLKEEHYGVFDCANVCGRIGTRYLS 857

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 858 VESHITMMAAAQSFISGAISKTINMPNDATIEDCQAAYELSWSLGVKANALYRDGSKLSQ 917

Query: 912 EKST 915
             S+
Sbjct: 918 PLSS 921


>gi|306840527|ref|ZP_07473286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO2]
 gi|306289542|gb|EFM60760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella sp. BO2]
          Length = 1264

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDALAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDVAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIVHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|84687160|ref|ZP_01015041.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664748|gb|EAQ11231.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodobacterales bacterium HTCC2654]
          Length = 1230

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 121/577 (20%), Positives = 201/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 175 YYVDFETKELTKSASAYEHPQPHACFIQSVGDDLVGDGGIMDLWVREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R     + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+
Sbjct: 235 FSSLRAANEPLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEY 293

Query: 463 LDLRKNT-----------GDDRRRTHDMNTAN---------------------------- 483
           ++ +                  R  +D+ TA                             
Sbjct: 294 INWKVKEEQKVASLVAGSKMHERHLNDIFTAIHGWDGSIDAATDPKENPQLKDAVRAAKK 353

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   +   VS  +         A+      
Sbjct: 354 VAIPETYIKRVLDYARQGYASIEFPTYDTDWDSEAYASVSGQNSNNSVRVTDAFLKAVEA 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R +  V + I A  LW  +    +    P I + D  N        G +  S
Sbjct: 414 DADWELIRRTDGSVAKTIKARDLWENIGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    +  F  +      R     L+  + +    
Sbjct: 474 NPCSEYMF----LDDTACNLASMNLLTFLKDGTFQAEDYMHATRLWTVTLEISVTMAQFP 529

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  + + Y S E   +       +S  A + S E+A
Sbjct: 530 SKEIAQLSYDFRTLGLGYANIGGLLMNMGLGYDSKEGRALTGALTAILSGVAYATSAEMA 589

Query: 703 QERGAYSSFKGSLWDQ----------------GVFPID--SIGLLAEVRDELAMNRTSRL 744
            E GA+  +K +                    G   +D   + L      + A+   +  
Sbjct: 590 GELGAFDGYKRNADHMLRVIRNHRTAAYGATDGYEALDIKPVALDHAGCPDKALVDLAMS 649

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 650 SWDEALALGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 709

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    GS+GN   I
Sbjct: 710 NRSVPAALEKLGYSSAQIEEIIAYAVGHGSLGNAPGI 746



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 13/162 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLW--DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            N  G    +N    + LK       D    +D      ++     + ++  K+   A  
Sbjct: 789 RNDLGLGDELNDPTFDLLKHLGFSKGDIEAANDHALGTMTLEGAPHLKEEHYKVFDCANP 848

Query: 851 --------IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901
                   +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K   
Sbjct: 849 CGKKGKRFLSTDAHIYMMAAAQSFISGAISKTINMPNDATIEDCQRAYELSWSLGIKANA 908

Query: 902 YLRSRSATSVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP 941
             R  S  S   +   ++  D     +    P      L   
Sbjct: 909 LYRDGSKLSQPLAAALVEDDDEAEEILATGTPQQKAEVLAEK 950


>gi|265994961|ref|ZP_06107518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|265999463|ref|ZP_05466495.2| ribonucleotide reductase large subunit [Brucella melitensis bv. 2
           str. 63/9]
 gi|262766074|gb|EEZ11863.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|263094108|gb|EEZ18030.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409064|gb|ADZ66129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis M28]
 gi|326538771|gb|ADZ86986.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella melitensis M5-90]
          Length = 1261

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 145/757 (19%), Positives = 262/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N   S+ +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLSWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|256044701|ref|ZP_05447605.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 1264

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 145/757 (19%), Positives = 262/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N   S+ +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLSWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 95.3 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 12/163 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFELLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
                R  S  +    S+L   D   +        +   +  +
Sbjct: 911 ANALYRDGSKLSQPLNSSLIADDEDEDDALEALIEAPAAARAV 953


>gi|225852546|ref|YP_002732779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis ATCC 23457]
 gi|256113594|ref|ZP_05454414.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 3 str. Ether]
 gi|225640911|gb|ACO00825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella melitensis ATCC 23457]
          Length = 1264

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 145/757 (19%), Positives = 262/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N   S+ +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLSWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|17987226|ref|NP_539860.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. 16M]
 gi|260564046|ref|ZP_05834532.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|265991125|ref|ZP_06103682.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17982898|gb|AAL52124.1| vitamin b12-dependent ribonucleotide reductase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154062|gb|EEW89154.1| ribonucleotide reductase large subunit [Brucella melitensis bv. 1
           str. 16M]
 gi|263001909|gb|EEZ14484.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 1261

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 145/757 (19%), Positives = 262/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N   S+ +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLSWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 95.3 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 12/163 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFELLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
                R  S  +    S+L   D   +        +   +  +
Sbjct: 908 ANALYRDGSKLSQPLNSSLIADDEDEDDALEALIEAPAAARAV 950


>gi|254689271|ref|ZP_05152525.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|254697407|ref|ZP_05159235.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|256257521|ref|ZP_05463057.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
          Length = 1257

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|62289965|ref|YP_221758.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 1 str. 9-941]
 gi|82699892|ref|YP_414466.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           melitensis biovar Abortus 2308]
 gi|189024207|ref|YP_001934975.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus S19]
 gi|237815468|ref|ZP_04594466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella abortus str. 2308 A]
 gi|254730305|ref|ZP_05188883.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260545287|ref|ZP_05821028.1| ribonucleotide reductase large subunit [Brucella abortus NCTC 8038]
 gi|260754779|ref|ZP_05867127.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260758002|ref|ZP_05870350.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260761825|ref|ZP_05874168.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883797|ref|ZP_05895411.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|297248364|ref|ZP_06932082.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella
           abortus bv. 5 str. B3196]
 gi|62196097|gb|AAX74397.1| ribonucleotide reductase domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615993|emb|CAJ11019.1| Ribonucleotide reductase large subunit [Brucella melitensis biovar
           Abortus 2308]
 gi|189019779|gb|ACD72501.1| Ribonucleotide reductase large subunit [Brucella abortus S19]
 gi|237790305|gb|EEP64515.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella abortus str. 2308 A]
 gi|260096694|gb|EEW80569.1| ribonucleotide reductase large subunit [Brucella abortus NCTC 8038]
 gi|260668320|gb|EEX55260.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 4 str. 292]
 gi|260672257|gb|EEX59078.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674887|gb|EEX61708.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 6 str. 870]
 gi|260873325|gb|EEX80394.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 9 str. C68]
 gi|297175533|gb|EFH34880.1| ribonucleoside-diphosphate reductase subunit alpha [Brucella
           abortus bv. 5 str. B3196]
          Length = 1260

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|254693756|ref|ZP_05155584.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|261214030|ref|ZP_05928311.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
 gi|260915637|gb|EEX82498.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella
           abortus bv. 3 str. Tulya]
          Length = 1261

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADKDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWTSADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|163843310|ref|YP_001627714.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis
           ATCC 23445]
 gi|163674033|gb|ABY38144.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Brucella suis ATCC 23445]
          Length = 1267

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/606 (20%), Positives = 219/606 (36%), Gaps = 106/606 (17%)

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDW 404
              +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G+++
Sbjct: 179 YVDWQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNF 238

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
           + +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++
Sbjct: 239 SHLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYI 297

Query: 464 DL-------------------------------RKNTGDD---------RRRTHDMNTAN 483
           D                                 +   DD          +R       N
Sbjct: 298 DWKVKEEQKVASLVTGSKIVKQHLTAIMRACVNCEADNDDCFDPAKNPALKREIKAAKKN 357

Query: 484 WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN----- 524
            +P+ ++KRV Q              +  W   +   VS  +       +  +       
Sbjct: 358 QVPENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVEND 417

Query: 525 -YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R + +V + + A  LW K+    + +  P + +    N        G + +SN
Sbjct: 418 GDWNLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASN 477

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C+E        +   CNL SINLL +   +  FD      T R    VL+  + +    
Sbjct: 478 PCSEYMF----LDDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFP 533

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +  + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A
Sbjct: 534 SREIARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMA 593

Query: 703 QERGAYSSFK------------GSLWDQGVFP------IDSIGLLAEVRDELAMNRTSRL 744
           +E G + S++                  G         ++ + L+AE   +  +   +R 
Sbjct: 594 KELGTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARA 653

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 654 AWDKALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 713

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HA 846
           N  +   L+     +  +     Y    G++     + P  LK                 
Sbjct: 714 NRAVPEALRTLGYSESQIAEIEAYAVGHGNLNQAPGVNPSSLKSKGFTDEKIEALNAALK 773

Query: 847 TAFEID 852
           +AF+I 
Sbjct: 774 SAFDIK 779



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 12/166 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                R  S  +    S+L   D   +                 + 
Sbjct: 911 ANALYRDGSKLSQPLNSSLIADDEDEDDEDDAVEALIEAPAAARAV 956


>gi|148560410|ref|YP_001258980.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis
           ATCC 25840]
 gi|148371667|gb|ABQ61646.1| B12-dependent ribonucleoside diphosphate reductase [Brucella ovis
           ATCC 25840]
          Length = 1264

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/606 (20%), Positives = 219/606 (36%), Gaps = 106/606 (17%)

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDW 404
              +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G+++
Sbjct: 179 YVDWQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNF 238

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
           + +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++
Sbjct: 239 SHLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYI 297

Query: 464 DL-------------------------------RKNTGDD---------RRRTHDMNTAN 483
           D                                 +   DD          +R       N
Sbjct: 298 DWKVKEEQKVASLVTGSKIVKQHLTAIMKACVNCEADNDDCFDPAKNPALKREIKAAKKN 357

Query: 484 WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN----- 524
            +P+ ++KRV Q              +  W   +   VS  +       +  +       
Sbjct: 358 QVPENYVKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDEFLRAVEND 417

Query: 525 -YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R + +V + + A  LW K+    + +  P + +    N        G + +SN
Sbjct: 418 GDWNLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHYNTTMNDWHTCPSAGPIRASN 477

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C+E        +   CNL SINLL +   +  FD      T R    VL+  + +    
Sbjct: 478 PCSEYMF----LDDTACNLASINLLTYRNKDGSFDIAAYEHTARLWTIVLEISVMMAQFP 533

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +  + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A
Sbjct: 534 SREIARLSYEYRTLGLGYANIGGLLMTSGIPYDSKEGRAICGALTAIMTGVAYATSAEMA 593

Query: 703 QERGAYSSFK------------GSLWDQGVFP------IDSIGLLAEVRDELAMNRTSRL 744
           +E G + S++                  G         ++ + L+AE   +  +   +R 
Sbjct: 594 KELGTFPSYEPNAQHMLRVIRNHRRAAHGERQGYEGLAVNPVALIAEDCPDQDLIAHARA 653

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 654 AWDKALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 713

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HA 846
           N  +   L+     +  +     Y    G++     + P  LK                 
Sbjct: 714 NRAVPEALRTLGYSESQIAEIEAYAVGHGNLNQAPGVNPSSLKSKGFTDEKIEALNAALK 773

Query: 847 TAFEID 852
           +AF+I 
Sbjct: 774 SAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANLCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|260168749|ref|ZP_05755560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp.
           F5/99]
 gi|261758230|ref|ZP_06001939.1| ribonucleotide reductase large subunit [Brucella sp. F5/99]
 gi|261738214|gb|EEY26210.1| ribonucleotide reductase large subunit [Brucella sp. F5/99]
          Length = 1261

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVVLIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|83951851|ref|ZP_00960583.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius
           nubinhibens ISM]
 gi|83836857|gb|EAP76154.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius
           nubinhibens ISM]
          Length = 1208

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/567 (20%), Positives = 200/567 (35%), Gaps = 91/567 (16%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T  +S   HPQ  +CF+ +V DD     GI       A L KY  G G +++ +R  G  
Sbjct: 161 TKSSSAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTNFSSLRAEGES 220

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
                GKS G++ FLK+ +  A A+  G   R+ A     +  H D++EF++ +      
Sbjct: 221 -LSGGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDIQEFINWKVKEEQK 279

Query: 473 -----------RRRTHDMNTAN-----------------------------WIPDLFMKR 492
                        + +D+ +A                               IP+ ++KR
Sbjct: 280 VASIVAGSKMHEMKLNDIFSAIRAWDGSSEDAVDPKKNEQLKTAIRGAKQVQIPETYVKR 339

Query: 493 VTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRG 532
           V                +  W   +   VS  +         A+             +R 
Sbjct: 340 VLDYAKQGYESIEFPTYDTDWDSEAYASVSGQNSNNSIRVTDAFLKAVKDDADWALINRT 399

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           +  V + I A  LW  +    +    P I F D  N        G +  SN C+E     
Sbjct: 400 DGSVAKTIKARDLWEDVGHAAWACADPGIQFHDTVNAWHTCPEDGEIRGSNPCSEYMF-- 457

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              +   CNL S+NLL  F N QFD D      R     L+  + +     ++  + ++ 
Sbjct: 458 --LDDTACNLASMNLLTFFKNGQFDADAYVHATRLWTMTLEISVLMAQFPSKEIAQLSYE 515

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L  + + Y S E   +       ++  A + S E+A E G ++ ++
Sbjct: 516 FRTLGLGYANIGGLLMNMGLGYDSDEGRAMCGALTAVMTGVAYATSAEMAGELGPFAGYE 575

Query: 713 GSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRLPWDELKKRVK 754
            +         +                     L      +  + + +   WDE     +
Sbjct: 576 RNAAHMLRVIRNHRNAAYGASEGYEALAVKPVPLDLANCPDQTLVKLAMASWDEALALGE 635

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQ 812
             G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L++
Sbjct: 636 KHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALEK 695

Query: 813 RDLWDEAMISDLKYH--DGSIGNIERI 837
                  +   + Y    G+IGN   +
Sbjct: 696 LGYGSAEIEEIVSYAVGHGTIGNAPGV 722



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 13/165 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + K+ +      +N    + L         + +   +  G+  +     +  +   I   
Sbjct: 763 FCKNVLGIPAAKLNDPTFDLLAHLGYSKADVDAANDHVCGTMTLEGAPHLKTEHYHIFDC 822

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W +G+K
Sbjct: 823 ANPCGKKGKRYLGVNSHITMMAAAQSFISGAISKTINMANDATIEDCQKAYELSWSLGVK 882

Query: 899 TTYYLRSRSATSVEK--STLKGVDGKLNAVPVTDPNSSTHSLGIP 941
                R  S  S     S ++  D          P      L   
Sbjct: 883 ANALYRDGSKLSQPLAASLVEDDDEAQEIFESGTPQEKAAVLAEK 927


>gi|225627518|ref|ZP_03785555.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           str. Cudo]
 gi|225617523|gb|EEH14568.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           str. Cudo]
          Length = 1264

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVVLIAEDCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|239831934|ref|ZP_04680263.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum intermedium LMG 3301]
 gi|239824201|gb|EEQ95769.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ochrobactrum intermedium LMG 3301]
          Length = 1265

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 149/757 (19%), Positives = 261/757 (34%), Gaps = 143/757 (18%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+               +++ +       ++   V        + +
Sbjct: 50  FSQVAADILAQKYFRKA----------GVPAQLKKVEENDVPSWLWRSVADEDALAKLPE 99

Query: 276 FDLVYLANDLKYERDFA---FEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVA--- 325
            +      D     D     + Y G +     YF     +     +  +M    RVA   
Sbjct: 100 NERYGSEMDACQVFDRLAGTWTYWGWK---GGYFASEEDALAFRDELAYMLATQRVAPNS 156

Query: 326 -----MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-- 378
                 GL             FY       +     T   S   HPQ  +CF+ +V D  
Sbjct: 157 PQWFNTGLHWAYGIDGPGQGHFY-----VDWQTGKLTKSKSAYEHPQPHACFIQSVGDDL 211

Query: 379 -DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437
            +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ +  A A
Sbjct: 212 VNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGA 270

Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLR------------------------------ 466
           +  G   R+ A    ++  H D+EE++D +                              
Sbjct: 271 IKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMKACVN 330

Query: 467 -----KNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                + T DD          +R       N +P+ ++KRV Q              +  
Sbjct: 331 CEAGSEATRDDCFDPAKNPALKREIRAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 390

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 391 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 450

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 451 AWASADPGLHYNTTMNDWHTCPTAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 506

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +     ++  + ++ +R +GLG       L    
Sbjct: 507 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKEIARLSYEYRTLGLGYANIGGLLMTSG 566

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 567 IPYDSDEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 626

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  M   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 627 ETQGYEGLAVNPVALIAEDCPDQDMIVHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 686

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 687 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 746

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           +I     + P  LK                 +AF+I 
Sbjct: 747 NINQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 783



 Score = 98.0 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 795 FCKDVLKLTDEQLNDFSFEMLPALGFTRKEIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 854

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 855 ANPCGKIGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNDATVEDCKDAYMLSWKLALK 914

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 915 ANALYRDGSK 924


>gi|254461385|ref|ZP_05074801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacterales bacterium HTCC2083]
 gi|206677974|gb|EDZ42461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Rhodobacteraceae bacterium HTCC2083]
          Length = 1225

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 199/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 168 HYVDYQTGVLTKSKSSYEHPQPHACFIQSVSDDLVGDGGIMDLWVREARLFKYGSGTGTN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A     +  H DV+EF
Sbjct: 228 FSSLRADGEQLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDADHPDVQEF 286

Query: 463 LDLRKNTGDDRR------RTHDMNTA---------------------------------- 482
           ++ +              + H+ +                                    
Sbjct: 287 INWKVKEEQKVASIVAGSKMHEQHLNEIFKAIRAWDGSSEDAVDPKKNSQLKDAIRGAKK 346

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEV----SDLHDLYGKEFEIAYE- 523
             IP+ ++KRV                +  W   +   V    S+        F  A E 
Sbjct: 347 TSIPETYVKRVLDYAKQGYSSIEFPTYDTDWDSEAYASVSGQNSNNSVRVTDSFLKAVEA 406

Query: 524 -NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            +      R +  V + I A  LW  +    +    P I + D  N        G +  S
Sbjct: 407 DSDWELIRRTDGTVAKTIKARDLWEDIGHAAWACADPGIQYHDTVNAWHTCPEDGEIRGS 466

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  + +++F  D+     R     L+  + +    
Sbjct: 467 NPCSEYMF----LDDTACNLASMNLLKFYKDSKFQADEYVHATRLWTVTLEISVMMAQFP 522

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + +   R +GLG       L  +   Y S E           ++  + + S E+A
Sbjct: 523 SKEIAQRSFDFRTLGLGYANIGGLLMNMGHSYDSDEGRAFCGALTAVMTGVSYATSAEMA 582

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA++ ++ +         +                     L      +  + + +  
Sbjct: 583 GELGAFAGYEKNAGHMLRVIRNHRNAAYGATEGYETLDIKPVALDLANCPDQDLTKLAMA 642

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD   +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 643 SWDNALELGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 702

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
           N  +   L+        +   + Y  G  SIGN   I
Sbjct: 703 NQSVPTALENLGYGSAQIEEIVSYAVGHASIGNAPGI 739



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 13/152 (8%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------ID 852
           N    N L         + +   +  G+  +     + ++   I   A          + 
Sbjct: 793 NDPTFNLLSHLGYSKADIDAANDHVCGTMTLEGAPYLKEEHLNIFDCANPCGKKGKRFLS 852

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 853 VDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 912

Query: 912 EKST--LKGVDGKLNAVPVTDPNSSTHSLGIP 941
             +   ++  D  ++ +   +       +   
Sbjct: 913 PLAAALVEDDDDAMDVLESGNITEKAAVIAEK 944


>gi|221633788|ref|YP_002523014.1| B12-dependent ribonucleoside diphosphate reductase [Thermomicrobium
           roseum DSM 5159]
 gi|221156890|gb|ACM06017.1| B12-dependent ribonucleoside diphosphate reductase [Thermomicrobium
           roseum DSM 5159]
          Length = 1122

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 107/521 (20%), Positives = 200/521 (38%), Gaps = 78/521 (14%)

Query: 363 TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             HP   +CF+ +V D   +  GIF  +   A + KY  G G +++ +R  G  + G  G
Sbjct: 188 YSHPSAHACFIQSVEDDLVNPGGIFDLVLREARVFKYGAGSGTNFSKIRAEGEPLSG-GG 246

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR----- 473
            S G++ FLKV +  A A+  G   R+ A    ++  H D+E+F+  +            
Sbjct: 247 TSSGLMSFLKVFDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEKFIRWKAEEEKKVAALVA 306

Query: 474 --------------RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
                             + N +  +PD F++ V ++  W L                  
Sbjct: 307 AGYSADFNGEAYATVSGQNSNNSVRVPDEFIRAVLEDRDWHLRW---------------- 350

Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                      R + ++ + + A  LW+ +    ++   P I +    N        G +
Sbjct: 351 -----------RTDGRIAKTVRARELWQMIAEAAWQCADPGIQYDTTINDWHTCPASGRI 399

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVID 637
           ++SN C+E        +   CNL S+NLL  +   + +FD       +R    VL+  + 
Sbjct: 400 NASNPCSEYMF----LDDTACNLASLNLLKFYDAKSGRFDIAAFRHAVRLWTIVLEITVL 455

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +  +   +   +++  R +GLG     S L  + +PY S  A  +A      ++  A + 
Sbjct: 456 MAQYPSREIAWNSYRFRTLGLGYANLGSLLMTMGLPYDSDRARAVAAAITAIMTGEAYAT 515

Query: 698 SVELAQERGAYSSFKGSL--------------WDQGVFPIDSIGL----LAEVRDELAMN 739
           S E+A   G + +F  +               +D      + + +    L        + 
Sbjct: 516 SAEMAAILGPFPAFPENREHMLRVIRNHRRAAYDAHPEEYEGLHIAPQGLDATHCPPELV 575

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             +R  WD   +  +  G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 576 AAAREAWDRALELGERFGYRNAQATLLAPTGTIGLLMDCDTTGIEPDFALVKFKKLAGGG 635

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            F +VN  +   L++     E +   L Y  G++  ++  P
Sbjct: 636 YFKIVNRSVAPALERLGYTPEQIQDILTYVLGTLR-LDGAP 675



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 44/152 (28%), Gaps = 11/152 (7%)

Query: 808 NELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATAFE--------IDPMWLI 857
           + L       E +   +D+     ++     +  +   +   A +        I  M  I
Sbjct: 735 DLLAALGFTAEEIEEANDVICGRQTVEGAPHLAPEHLPVFDCANKCGKHGTRFIHYMGHI 794

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q ++  A S  + +  E + + +   Y + W +GLK     R  S  S   ST 
Sbjct: 795 RMMAAVQPFLSGAISKTINMPHEVTVEDVANAYFEGWRLGLKALAIYRDGSKLSQPLSTR 854

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948
                K          +      +        
Sbjct: 855 SSEKEKSERASTATREAPPPERQVEVMVVERP 886


>gi|256255021|ref|ZP_05460557.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|261222211|ref|ZP_05936492.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|265998175|ref|ZP_06110732.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
 gi|260920795|gb|EEX87448.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           B1/94]
 gi|262552643|gb|EEZ08633.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 1261

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 85  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 560 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 ERQGYEGLAVNPVALIAEGCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 740 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 908 ANALYRDGSK 917


>gi|256159759|ref|ZP_05457506.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti
           M490/95/1]
          Length = 1264

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 144/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 31  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPACLKKVEENDVPSWLWRS 87

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 88  VADEDALSKLPEGERYGSEMDACQVFDRLAGTWTYWGWKGGYFDSEEDAVAFRDELAYML 147

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 148 ATQRVAPNSPQWFNTGLYWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 207

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ + 
Sbjct: 208 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDR 266

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 267 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 326

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 327 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 386

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 387 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 446

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 447 AWASADPGLHYNTTMNDWHTCPSAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 502

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +      +  + ++ +R +GLG       L    
Sbjct: 503 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSREIARLSYEYRTLGLGYANIGGLLMTSG 562

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++                  G
Sbjct: 563 IPYDSKEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAQHMLRVIRNHRRAAHG 622

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  +   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 623 ERQGYEGLAVNPVALIAEGCPDQDLIAHARAAWDKALELGEKHGYRNAQATVIAPTGTIG 682

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 683 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 742

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     + P  LK                 +AF+I 
Sbjct: 743 NLNQAPGVNPSSLKSKGFTDEKIEALNAALKSAFDIK 779



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 791 FCKDVLKLTDEQLNDFSFEMLPVLGFSKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 851 ANPCGKIGKRYLSVESHIHMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 910

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 911 ANALYRDGSK 920


>gi|255263212|ref|ZP_05342554.1| vitamin B12-dependent ribonucleotide reductase [Thalassiobium sp.
           R2A62]
 gi|255105547|gb|EET48221.1| vitamin B12-dependent ribonucleotide reductase [Thalassiobium sp.
           R2A62]
          Length = 1273

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/563 (19%), Positives = 200/563 (35%), Gaps = 91/563 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +RG G  + G 
Sbjct: 231 SSYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGAGEALSG- 289

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR---------- 466
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +          
Sbjct: 290 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIIDADHPDIEDFINWKVLEEQKVASI 349

Query: 467 ---KNTGDDRRRTHDMNTANW---------------------------IPDLFMKRVTQ- 495
                  +++         +W                           IP+ ++KRV   
Sbjct: 350 VAGSKMHEEKLNAIFAAIRSWDGAEADAYDPKVNSALKDAVRSAKKVSIPETYVKRVLDY 409

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKV 536
                        +  W   + + VS  +         A+             +R    V
Sbjct: 410 AKQGHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLKAVEVDADWELVNRKNGNV 469

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + I A  LW ++    +    P I + D  N        G +  SN C+E        +
Sbjct: 470 SKTIKARDLWEQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGSNPCSEYMF----LD 525

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+NLL  + + QF  ++     R     L+  + +     ++  + ++  R +
Sbjct: 526 DTACNLASMNLLTFYTDGQFQVEEYMHATRLWTVTLEISVMMAQFPSKEIAQRSYDFRTL 585

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG       L  +   Y S E   +       ++  + + S E+A E GA++ +  +  
Sbjct: 586 GLGYANIGGLLMNMGHGYDSSEGRALCGALTAILTGVSYATSAEIAGELGAFAGYGKNKD 645

Query: 717 DQGVFPIDSIG------------------LLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                  +                     L      +  +   +   WDE     +  G 
Sbjct: 646 HMLRVIRNHRNAAYGATGGYEKLATKPVPLDHAGCPDSRLVELAMSSWDEALSLGEKHGY 705

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L++    
Sbjct: 706 RNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPASLEKLGYG 765

Query: 817 DEAMISDLKYHDG--SIGNIERI 837
              +   + Y  G  S+GN   I
Sbjct: 766 SAQIEEIVSYAVGHASMGNAPGI 788



 Score = 74.9 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------ID 852
           N    + L+        + +   +  G+  +     + ++   +   A          + 
Sbjct: 842 NDPSFDLLRHLGFTRADIDAANDHVCGTMTLEGAPHLKEEHYNVFDCANPCGKKGKRFLS 901

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
               I   +  Q +I  A S  + + ++ + +     Y  +W + +K     R  S 
Sbjct: 902 VDSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLAIKANALYRDGSK 958


>gi|170738645|ref|YP_001767300.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium sp. 4-46]
 gi|168192919|gb|ACA14866.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium sp. 4-46]
          Length = 1247

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 125/608 (20%), Positives = 210/608 (34%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G++
Sbjct: 175 YYVDYRTGALTKSASAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG    + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E F
Sbjct: 235 FSALRGENEKLAG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEAF 293

Query: 463 LDLRKNT-----------------------------------GDDRRRTHDMNTAN---- 483
           +D +                                       D  R             
Sbjct: 294 IDWKVREEQKVAALVTGSKVAAKHLKAVMRACLNCEAEGDACFDPERNPALKREVKAARR 353

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYEN 524
             +PD  +KRV Q              +  W   +   VS  +         +F  A E 
Sbjct: 354 AMVPDASVKRVIQSARQGATEVDFPIFDTDWDSEAYLTVSGQNSNNSVSLTDDFLRAVEA 413

Query: 525 YERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                 R  I  KV + + A  LW K+    + +  P + F    N        G + +S
Sbjct: 414 DADWPLRTRIGGKVAKTLKARDLWEKIGAAAWASADPGLHFNTTMNDWHTCPVGGRIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NLLA F      FD +      R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLLALFDRGTRTFDVEAYEHLCRLWTIVLEISVTMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
               +    ++ +R +GLG       L  + +PY S E   +A      ++  A + S E
Sbjct: 530 FPSREIADLSYKYRTLGLGYANVGGLLMTMGLPYDSREGRALAGALTAIMTGVAYATSAE 589

Query: 701 LAQERGAYSSFKGS------------LWDQGVFPI------DSIGLLAEVRDELAMNRTS 742
           +A+E G + +++ +                G            + L      +  +   +
Sbjct: 590 MARELGPFPAYEENADAMLRVIRNHRRAAHGEAEGYEFLSTKPVPLDHAACPQPDLVAHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              WD      +  G RN+    IAPT TI  +    +  I+P +  + + K    G F 
Sbjct: 650 TRAWDRALVLGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI------------- 844
           ++N  + + L+     +  +     Y    GS+G    + P  L+               
Sbjct: 710 IINRAVPDALRALGYRESEIAEIEAYAVGHGSLGQAPAVNPAALRAKGFTDDKIAAVEAG 769

Query: 845 HATAFEID 852
             +AF+I 
Sbjct: 770 LKSAFDIK 777



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 20/141 (14%)

Query: 788 NLYVKSNMSGDFT-----VVNSFLVN----ELKQRDLWDEAMISDLKYHDG--SIGNIER 836
            ++ +  +  DF      V    L +     L         + +   +  G  ++     
Sbjct: 778 FVFNRWTLGEDFLTRTLRVPAERLADPSFDLLTHLGFTRREIEAANIHVCGAMTLEGAPH 837

Query: 837 IPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
           +  +   +   A          +     I   +  Q +I  A S  + + ++ + +    
Sbjct: 838 LKREHYAVFDCANPCGRTGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKE 897

Query: 888 IYRQAWLMGLKTTYYLRSRSA 908
            YR +W +GLK     R  S 
Sbjct: 898 AYRLSWTLGLKANALYRDGSK 918


>gi|84515607|ref|ZP_01002969.1| ribonucleotide-diphosphate reductase alpha subunit [Loktanella
           vestfoldensis SKA53]
 gi|84510890|gb|EAQ07345.1| ribonucleotide-diphosphate reductase alpha subunit [Loktanella
           vestfoldensis SKA53]
          Length = 1202

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/577 (20%), Positives = 202/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 167 YYVDYQTGELTKSTSSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF
Sbjct: 227 FSSLRGEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEF 285

Query: 463 LDLRKNTGDDR----------RRTHDMNTANW---------------------------- 484
           ++ +                  R  +   A                              
Sbjct: 286 INWKVIEEQKVASIVAGSKMHERYLNAIFAAIESWDGEEIAAYDPKTNETLAAAVKDAKR 345

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKE----FEIAYEN 524
             IP+ ++KRV                +  W   +   VS  +          F  A EN
Sbjct: 346 SAIPETYIKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTDAFLKAVEN 405

Query: 525 YERQ--ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            E     +R   +V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 406 DEMWKLINRKNGEVAKIIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  + + QF  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFYKDGQFQVEDYMHATRLWTVTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  + + S E+A
Sbjct: 522 SKEIAQRSYDFRTLGLGYANIGGLLMNMGFGYDSAEGRAMGAALTAIMTGVSYATSAEMA 581

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA+  +  +         +                     L      +  + + +  
Sbjct: 582 GELGAFPGYAKNEKHMLRVIRNHRNAAYGKTDGYEALDVKPVPLDHANCPDDRLVKLAVE 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 SWDEALRLGEAHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    GS+G    I
Sbjct: 702 NQSVPAALEKLGYGSAQIEEIIAYAVGHGSMGQAPAI 738



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+      + + +   +  G+  +     + +D   +   A          + 
Sbjct: 792 NDPTFDLLRHLGYTKQDIEAANDHVCGTMTLEGAPFLREDHYSVFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S 
Sbjct: 852 VDSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSK 908


>gi|256371812|ref|YP_003109636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008396|gb|ACU53963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidimicrobium ferrooxidans DSM 10331]
          Length = 1331

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 136/368 (36%), Gaps = 12/368 (3%)

Query: 566  PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAST 624
              N+  P+ H  +V    +           + + CNL SINLLA+   +  FD +    T
Sbjct: 730  TYNLSEPKNHSYIVDGIVVRN--CSEYMHLDNSSCNLASINLLAYLDEDGNFDVEGFRHT 787

Query: 625  IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             R  +   D +     +   +  +++  +R +GLG     + L  L +PY S      A 
Sbjct: 788  ARVLITAQDILAGNADYPTPRIAETSRAYRQLGLGYANLGAMLMALGLPYDSDGGRAYAA 847

Query: 685  ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSR 743
                 ++  A   S ELA+  G ++ +                 LA+V      +   +R
Sbjct: 848  AVTALMTGAAYERSAELAERLGPFAGYADDAESMLRVLGMHRDALAKVDGAPEAIVEAAR 907

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTV 801
              WD    R   +G+RN+    +APT TI  +    +  I+P +  + Y      G   +
Sbjct: 908  ASWDMAIARASEVGVRNAQASLLAPTGTIGFLMDCDTTGIEPDFSLVKYKTLVGGGTMKI 967

Query: 802  VNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA---FEIDPMWL 856
            VN  +   L+     +  +     Y     SI     +  + + + A A   + I P   
Sbjct: 968  VNQTVPRALRTLGYPEHEIDQITAYLAEHDSIVGAPGLKPEHEAVFACAVGEYPISPTGH 1027

Query: 857  IESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
            +      Q ++  A S  + L    + + ++  Y  AW +G+K     R  S      ST
Sbjct: 1028 LAMMGAVQPFLSGAISKTVNLPSTSTVEDVEQTYLDAWRLGIKAVALYRDGSKVGQPLST 1087

Query: 916  LKGVDGKL 923
                D + 
Sbjct: 1088 THEEDSEA 1095



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/285 (20%), Positives = 102/285 (35%), Gaps = 50/285 (17%)

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR--HPQLSSCFLTTVPDDLYG 382
           A G    + E++  A E   LL       ++P  FN G      Q S+CF+ +V D +  
Sbjct: 97  ADGYFADDDERDAFADELRWLLVHQRAAFNSPVWFNIGVEGVPQQASACFILSVDDTMES 156

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I     E  ++ K   G G + + +R     + G  G + G + F++ A+ +A  +  GG
Sbjct: 157 ILNWYHEEGIIFKGGSGAGVNLSTIRSSVEPLAG-GGTASGPVSFMRGADASAGTIKSGG 215

Query: 443 K-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTA 482
           K R+ A    L   H DVEEF+  +       R                   +  + N +
Sbjct: 216 KTRRAAKMVILNVDHPDVEEFVWTKAIEERKARVLAEAGFDMGVDGKDAFSIQYQNANNS 275

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
             + D FM+ V ++  W                                   +V + + A
Sbjct: 276 VRVTDEFMQAVVEDREW---------------------------ELRAVTTGEVTKTVRA 308

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
             L+ ++    +E   P + F    N      + G ++ SN C  
Sbjct: 309 RDLFHQIAEAAWECADPGLQFDTTINRWHTTPNAGRINGSNPCFP 353


>gi|315187551|gb|EFU21307.1| ribonucleoside-diphosphate reductase class II [Spirochaeta
           thermophila DSM 6578]
          Length = 1120

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 124/650 (19%), Positives = 225/650 (34%), Gaps = 104/650 (16%)

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345
           R++    +  ++ Y   +           E  QAF+  V   LA +       + +++N 
Sbjct: 74  REYDARQVFHRLAYTWMWWGKEAGYFDSEEDAQAFYDEVCYMLAHQMAAPN--SPQWFNT 131

Query: 346 LSSFHFMCSTPTLFNSG--------------TRHPQLSSCFLTTVPDD---LYGIFGALQ 388
                +    P   +                   PQ  +CF+  V DD     GI  AL 
Sbjct: 132 GLHAVYGIEGPPQGHYYVDHRTGELEKSANAYSRPQPHACFILDVEDDLVGEGGIMDALH 191

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGA 447
             A + KY  G G++++ +R  G  + G  G S G++ FLKV + +A A+  G   R+ A
Sbjct: 192 REARIFKYGSGTGSNFSKIRAEGEPLSG-GGMSSGLMSFLKVFDRSAAAIKSGGTTRRAA 250

Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDR--------------------RRTHDMNTANWIPD 487
               L+  H D+  F+  +                            R+     A  + D
Sbjct: 251 KMVVLDVDHPDILTFVRWKVEEEYKVASLVAGSRLVARHAREILSAYRSEGDVAAGGVRD 310

Query: 488 LFMKRVTQNAGWTLFS-------PDEVSDLHDLYGKEFE-IAYEN--------------- 524
              + +                      +   +Y  ++E  AY                 
Sbjct: 311 AVGRALEAGVPEQFVHQVLRLAEEGMGPEEFPVYTTDWEGEAYATVSGQSSNNSVRVSHE 370

Query: 525 ---------YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                          R   +V R + A  LW +++   +    P + F    N       
Sbjct: 371 FMLAVQEDGEWPLTARTTGEVVRTVRARDLWNEIVLAAWRCADPGLQFDTTINEWHTCPA 430

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLD 633
            G + +SN C+E        +   CNL S+NLLA +     +FD D     +     +L+
Sbjct: 431 DGRIRASNPCSEYMF----LDDTACNLASLNLLAFYDEEEGRFDVDSFVHAVDIWTLILE 486

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             + +      +  + ++ +R +GLG     S L ++ +PY S E   +A      ++  
Sbjct: 487 ISVVMAQFPSAEVARRSYLYRTLGLGFANLGSLLMVMGLPYDSDEGRAVAGAITAIMTGR 546

Query: 694 AISASVELAQERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRD------E 735
           A   S  +A E G +  F+ +               +   P +  GL             
Sbjct: 547 AYHMSARMAAEWGPFPRFEANREHMLRVVRNHARAARQAPPEEYEGLSVTPMGLDPGHTP 606

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKS 793
             +   +R  WDE  +  +  G RN+   AIAPT TI  +    +  I+P Y  + + K 
Sbjct: 607 DYLLEAARRVWDEALEWGERHGFRNAQVSAIAPTGTIGLLMDCDTTGIEPDYALVKFKKL 666

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIPDDL 841
              G F ++N  +   L++     E +   ++Y    G++     +  ++
Sbjct: 667 AGGGYFKIINRSVPPALRRLGYSAEQVEEIVRYCVGRGTLKGAPGVSYEV 716



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 11/147 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA--------FEIDPMWLI 857
           + L      +E + +  ++  G  ++     + ++   +  TA          I     I
Sbjct: 770 DLLGFLGFSEEEVGAAEEWACGAMTLEGAPYLREEHLPVFDTATPSGRKGSRAISWRGHI 829

Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q ++  A S  + +    + + ++  Y  +W   LK     R  S  S      
Sbjct: 830 LMMAAVQPFVSGAISKTINMPQSATVRDVEEAYFLSWRSMLKAVALYRDGSKLSQPLVGA 889

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                ++  V      +   +      
Sbjct: 890 GSARDRVAEVIAEAERAVGTARPAGRV 916


>gi|312879665|ref|ZP_07739465.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminomonas paucivorans DSM 12260]
 gi|310782956|gb|EFQ23354.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Aminomonas paucivorans DSM 12260]
          Length = 1095

 Score =  202 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 141/348 (40%), Gaps = 41/348 (11%)

Query: 597 TAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              CNLGSINL+       + D++KL  T+R AVR LD+VID NC+ + +  +     R 
Sbjct: 655 YESCNLGSINLVRMADEAGELDWEKLDRTVRHAVRFLDDVIDANCYPLPEIAQRTRASRK 714

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           IGLG+MG+   L L  + Y SPE++ +A E M FI      AS  L +ERGA+ +++GSL
Sbjct: 715 IGLGIMGWADLLFLRRLRYGSPESLVLAGELMGFIRAVGHEASEALGEERGAFPAWEGSL 774

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
             +                                       +RN+    +APT TI+ +
Sbjct: 775 HQRQGRR-----------------------------------LRNATVTTLAPTGTISLL 799

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVV-NSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
            G S  I+P++     +     D  V+ N     +L       + +++ +    GS+   
Sbjct: 800 AGCSSGIEPAFSLALRRRAFESDTLVLLNPVFQRDLAILGEPGKDILARVLES-GSLEGT 858

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
           + +P  +K+ + TA E+     + + +  Q   D   S  + L  E    +++  +  A 
Sbjct: 859 D-VPLWMKQTYVTAHEVSLEDHVRTQAAFQAHTDNGVSKTVNLPHEAGADQVERAFLLAH 917

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
             G K     R R   +       G       VP           G  
Sbjct: 918 ETGCKGITVYRDRCKETQVLYQGTGEVPSP-GVPTKPKRRPAALTGST 964



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 161/380 (42%), Gaps = 48/380 (12%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLAL----KETEKEKRAVEFYNLL 346
                 L++L  RY      G+  E P+  F+RVA  +A        + +  A  FY L+
Sbjct: 7   DLGENALKVLEKRYLRRDEAGNLAETPEGLFVRVAEAVAAPEAAHGGDPKAWAEVFYGLM 66

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           +   F+ ++PTL N+GT   QLS+CF+  V D +  IF AL+  A++ K  GG G D++ 
Sbjct: 67  ARGDFLPNSPTLMNAGTPLGQLSACFVLPVGDSMEEIFDALKHTALVHKSGGGTGFDFSD 126

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
           +R  G  +  T+G + G + FL++ + T   + QGG R+GA    LE  H DV +F+  +
Sbjct: 127 LRPAGDRVRSTSGVASGPLSFLELFDRTTEVIKQGGMRRGANMGILEASHPDVMDFVRAK 186

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
                ++ R  + N +  + D F++ V  +  W L +P                      
Sbjct: 187 T----EQGRLGNFNISVGVTDRFLRAVRDDGSWDLVNPRT-------------------- 222

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                   +  R + A  LWR ++   + TG P + F D     +P  H+G + S+N C 
Sbjct: 223 -------GETVRTLPARELWRLLVDSAWRTGDPGLVFLDRIEEDNPTPHLGRLRSTNPCV 275

Query: 587 --EITLNSSSEETAVCNLG--SINLLAHFANNQFDYDKL-----ASTIRTAVR---VLDN 634
             +  + +      V  +    +N++      + + +          +R   R    L  
Sbjct: 276 TGDTWVLTDQGPRQVGRVAGLPLNVVVDGRVWRTEEEGFFPTGVRPVLRLVTREGYSLRL 335

Query: 635 VIDINCHTIEKAKKSNHTHR 654
             D     + +  +S+   R
Sbjct: 336 TGDHPVCRVVRCSRSSLKTR 355


>gi|251771782|gb|EES52357.1| Ribonucleotide reductase [Leptospirillum ferrodiazotrophum]
          Length = 366

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 42/249 (16%)

Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734
            S E +E+A++ M FI   A   S++LA+  G Y  F+G    +                
Sbjct: 1   DSEEGLEMAEKVMGFIREEAEKTSLDLAKVHGPYPYFEGIGSPK---------------- 44

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
                                   RNS+ + IAPT TI+ I   S   +P +  ++ K+ 
Sbjct: 45  ------------------------RNSHLLTIAPTGTISMIADTSSGCEPEFSIIWYKNV 80

Query: 795 MSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
           M G              ++   W + + + +  + GS   + ++P+  ++  ATA +I P
Sbjct: 81  MDGTHLPYTLEMFERVARKEGFWSDDLPALIVENHGSCRGLAQVPEKWQRTFATAHDIAP 140

Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            W +   +  QK ID A S  + + E  +   ++  Y  A+ +G K     R  S ++  
Sbjct: 141 EWHVRMQAAFQKHIDAAVSKTINMPETATIGDVENAYMLAYQLGCKGITVYRDGSRSNQV 200

Query: 913 KSTLKGVDG 921
            +      G
Sbjct: 201 LNLGSEKKG 209


>gi|163746552|ref|ZP_02153910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanibulbus indolifex HEL-45]
 gi|161380437|gb|EDQ04848.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanibulbus indolifex HEL-45]
          Length = 1217

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 201/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V DD     GI       A L KY  G G +
Sbjct: 167 YYVDYKTGKLTRSKSSYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+++F
Sbjct: 227 FSSLRGEGEKLSG-GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIQDF 285

Query: 463 LDLRKNT----------------------------------------GDDRRRTHDMNTA 482
           ++ +                                            D  ++       
Sbjct: 286 INWKVLEEQKVASIVAGSKMHEQKLNLLFDAIKAWDGKAEDAYDPAKNDQLKQAIREAKK 345

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   + + VS  +         A+      
Sbjct: 346 VTIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTNAFLTAVEK 405

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R E +V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 406 DADWELISRTENRVTKTIRARDLWDQVGHAAWACADPGIQYHDTVNDWHTCPEDGAIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFLKDGEFQVEDYMHASRLWTVTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 522 SKEIAQRSYDFRTLGLGYANIGGLLMNMGYSYDSDEGRALGGALTAIMTGVAYATSAEMA 581

Query: 703 QERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRL 744
            E GA+  +  +         +                     L      +  +   ++ 
Sbjct: 582 GELGAFPGYSKNAAHMLRVIRNHRQAAYGEAEGYEQLSVKPVPLDHANCPQDGLVDVAKS 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  K  +T G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 CWDEALKLGETHGYRNAQTSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L++       +   + Y    G+IGN   I
Sbjct: 702 NQSVPAALEKLGYGSAQIEEIVGYAVGHGTIGNAPSI 738



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + ++   I   A          + 
Sbjct: 792 NDPTFDLLRSLGFSKADIEAANDHVCGTMTLEGAPHLKEEHYGIFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VNSHIYMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGIKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D +  A  +        +  +  
Sbjct: 912 PLAAALVEDDEDAAETLESGTPHEKAAVLAE 942


>gi|220925864|ref|YP_002501166.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium nodulans ORS 2060]
 gi|219950471|gb|ACL60863.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium nodulans ORS 2060]
          Length = 1243

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 118/598 (19%), Positives = 204/598 (34%), Gaps = 107/598 (17%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG    
Sbjct: 185 TKSASAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSALRGENEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT--- 469
           + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H DVE F+D +      
Sbjct: 245 LAG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEAFIDWKVKEEQK 303

Query: 470 --------------------------------GDDRRRTHDMNTAN-----WIPDLFMKR 492
                                            D  R               +PD ++KR
Sbjct: 304 VAALVTGSKVAAKHLKAVMRACVNCEAEGDACFDPERNPALKREVKAARRAMVPDAYIKR 363

Query: 493 VTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE----- 533
           V Q              +  W   +   VS  +          +                
Sbjct: 364 VIQSARQGATEVDFPVFDTDWDSEAYLTVSGQNSNNSVSLTDEFLRAVEADGDWPLKARI 423

Query: 534 -IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             KV + + A  LW K+    + +  P + F    N        G + +SN C+E     
Sbjct: 424 GGKVTKTLKARDLWDKIGAAAWASADPGLHFNTTMNDWHTCPAGGRIRASNPCSEYMF-- 481

Query: 593 SSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              +   CNL S NLLA +      FD +      R    VL+  + +      +    +
Sbjct: 482 --LDDTACNLASANLLALYDRTTKTFDVEAYEHLCRLWTVVLEISVTMAQFPSREIADLS 539

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + +R +GLG       L  + +PY S E   +A      ++  A + S E+A+E G + +
Sbjct: 540 YKYRTLGLGYANVGGLLMTMGLPYDSREGRALAGALTAIMTGVAYATSAEMARELGPFPA 599

Query: 711 FKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKR 752
           ++ +         +                     L      +  +   +   WD     
Sbjct: 600 YEENADAMLRVIRNHRRAAHGEAEGYEFLSTRPVPLDHAACPQRNLVAHATQAWDRALAL 659

Query: 753 VKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNEL 810
            +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L
Sbjct: 660 GEEHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPDAL 719

Query: 811 KQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKI---HATAFEID 852
           +     +  +     Y    GS+G    I            + +  +     +AF+I 
Sbjct: 720 RALGYRESEIAEIEAYAVGHGSLGQAPGINPGTLRAKGFTDEKIAAVEAGLKSAFDIK 777



 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 24/179 (13%)

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ--NLYVKSNMSGDFT-----VVNS 804
             +  G+      A   T     I  V   +  ++    ++ +  +  +F      V   
Sbjct: 742 LGQAPGINPGTLRAKGFTDE--KIAAVEAGLKSAFDIKFVFNRWTLGDEFLTQTLKVPAD 799

Query: 805 FLVN----ELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------E 850
            L +     L         + +   +  G  ++     +      +   A          
Sbjct: 800 RLADPTFDLLAHLGFGRREIEAANIHVCGAMTLEGAPHLAAKHYAVFDCANPCGRTGKRY 859

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           +     I   +  Q +I  A S  + + ++ + +     YR +W +GLK     R  S 
Sbjct: 860 LSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKEAYRLSWTLGLKANALYRDGSK 918


>gi|294084614|ref|YP_003551372.1| ribonucleoside-diphosphate reductase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664187|gb|ADE39288.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 1215

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 113/580 (19%), Positives = 202/580 (34%), Gaps = 93/580 (16%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G++
Sbjct: 175 YYVDFKTGKLTRSASAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G ++ G  GKS G++ FL++ +  A A+  G   R+ A    ++  H D+EE+
Sbjct: 235 FSRLRGSGENLSG-GGKSSGLMSFLRIGDRAAGAIKSGGTTRRAAKMVTVDIDHPDIEEY 293

Query: 463 LDLR------------------------------KNTGDDRRRTHDMNTAN--------- 483
           +D +                               +  DD  R                 
Sbjct: 294 VDWKVVEEQKVAALVAGSKLAQKHMGEVMAACQITDGLDDDERFDPKVNKVLRKAIISAR 353

Query: 484 --WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN--- 524
              IP+ +++RV Q              +  W   +   V+  +          Y     
Sbjct: 354 KSMIPENYVQRVIQFAQQGYNEIEFKTYDTDWDSDAYLTVAGQNSNNSVRVSNDYLQAVL 413

Query: 525 ---YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
                    R +  V + I A  LW K+    +    P + +    N        G +++
Sbjct: 414 DGGDWNLIKRRDDGVAKTIKAKDLWEKIAHAAWACADPGLQYDTTINEWHTCPEGGRINA 473

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINC 640
           SN C+E        +   CNL S+NL+     +  FD +      R     L+  + +  
Sbjct: 474 SNPCSEYMF----LDDTACNLASLNLMQFRKQDGTFDIEMFEHGCRFWTLTLEISVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              ++  + ++ +R +GLG       L      Y S E   I       ++  + + S E
Sbjct: 530 FPSKEIAQLSYEYRTLGLGFANIGGLLMAQGHSYDSDEGRAICGAISAIMTGTSYATSAE 589

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTS 742
           +A E G +  +K +         +                     L A+   +  +   +
Sbjct: 590 IAGEVGPFPQYKKNAKHMLRVMKNHRLAAHSKASGYKGLSILPVPLDAKSCPDQDLVNAA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
           +  WD+        G RN+    IAPT TI  +    +  I+P +  + + K    G F 
Sbjct: 650 KAAWDKAVDLGTKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFAIVKFKKLAGGGYFK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIP 838
           ++N  +   L +     + +   + Y    GS+ N + I 
Sbjct: 710 IINRVVPEALDKLGYGKDQVKDIINYAVGAGSLKNCQSIS 749



 Score = 95.3 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 11/162 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + K  +      +N F  N L+      +A+ +   +  GS  +     + D+   I   
Sbjct: 789 FCKDKLGFSDEQLNDFEFNMLEALGFDKDAVEAANIHVCGSMTLEGAPHLKDEHLPIFDC 848

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + +    + ++    Y  +W +GLK
Sbjct: 849 ANVCGRIGKRFLSVDSHITMMAASQPFISGAISKTINMPNAATVEECGAAYMLSWRLGLK 908

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
                R  S  S   S+    D + +   +    +   +   
Sbjct: 909 ANALYRDGSKLSQPLSSGLVEDIEDDDEAMAALETPVAAAAP 950


>gi|209885884|ref|YP_002289741.1| B12-dependent ribonucleoside diphosphate reductase [Oligotropha
           carboxidovorans OM5]
 gi|209874080|gb|ACI93876.1| B12-dependent ribonucleoside diphosphate reductase [Oligotropha
           carboxidovorans OM5]
          Length = 1251

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/632 (19%), Positives = 215/632 (34%), Gaps = 99/632 (15%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM---C 353
           G     D      +  R  + Q     VA             A          +++    
Sbjct: 125 GYFTSEDDARAFHDELRYMLAQQM---VAPNSPQWFNTGLHWAYGIDGPGQGHYYVDWKT 181

Query: 354 STPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
              T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++++ +RG 
Sbjct: 182 GKLTKSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGE 241

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +   
Sbjct: 242 GEKLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVRE 300

Query: 470 GDDR----------------------------------------RRTHDMNTANWIPDLF 489
                                                       +R   +     + D  
Sbjct: 301 EQKVAALVTGSKINQKHLKAIMKACVNCEGSGDDCFDPEKNPALKREIKLARRALVTDNM 360

Query: 490 MKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQA 529
           +KRV Q              +  W   +   VS  +       +  +             
Sbjct: 361 IKRVIQFARQGYTDIQFDTFDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGEWNLV 420

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
            R + KV + + A  LW K+    + +  P + F    N     +  G + +SN C+E  
Sbjct: 421 GRTDGKVRKTLRARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480

Query: 590 LNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                 +   CNL S NLL  +  +  +FD D      R    VL+  + +     +   
Sbjct: 481 F----LDDTACNLASANLLTFYDPHTRRFDTDAYEHLCRLWTIVLEISVMMAQFPSKAIA 536

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R +GLG       L  + +PY S E   +       ++  A + S E+A E G 
Sbjct: 537 ELSYEFRTLGLGYANIGGLLMTMGLPYDSKEGRALCGALSAIMTGTAYATSAEMAAELGT 596

Query: 708 YSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +  +K +                GV        +D + L      +  +   ++  WD  
Sbjct: 597 FPGYKKNAKHVLRVIRNHRRAAHGVAVGYEALAVDPVPLDHASCPQADIVEHAKAVWDRA 656

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLV 807
            +  +T G RN+    +APT TI  +    +  I+P +  + + K    G + ++N  + 
Sbjct: 657 LELGETNGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVP 716

Query: 808 NELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
             L+     +  +     Y    GS+ N   I
Sbjct: 717 EALRALGYRESEIAEIEAYAVGHGSLSNAPGI 748



 Score = 95.3 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++++++    V+N+   + L         + +   +  G  ++     + D+   +   
Sbjct: 789 FIRNSLNIAPEVMNAPGFDLLVALGFSKRDIEAANVHICGAMTVEGAPHLKDEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVEDCKNAYLLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|260460764|ref|ZP_05809014.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium opportunistum WSM2075]
 gi|259033341|gb|EEW34602.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium opportunistum WSM2075]
          Length = 1263

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 149/757 (19%), Positives = 263/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F L+ +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSVV---FRLDNIDVPAQFSQVAADILAQKYFRKAGVPARLKKVEENDVPSFLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              + +L  L    +Y  +     +  ++     +    G   +        R  +   L
Sbjct: 85  VADEAELAKLPEAERYGSEIDARQVFDRLAGTWTYWGYKGGYFKSEDDALAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P+  +              S   HPQ  +CF+  V
Sbjct: 145 ATQRVAPNSPQWFNTGLHWAYGIDGPSQGHFYVDPFTGKLTKSKSSYEHPQPHACFIQGV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  G+S G++ FLK+ + 
Sbjct: 205 QDDLVNEGGIMDLWVREARLFKYGSGTGSNFSFLRGEGEKLSG-GGRSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT----------------------- 469
            A A+  G   R+ A    ++  H D+EEF+D + N                        
Sbjct: 264 AAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVNEEQKVASLVTGSKIVKKHLEAIMK 323

Query: 470 -------GDDRRRTHDMNTANW----------IPDLFMKRVTQ--------------NAG 498
                   DD      +NTA            +P+ ++ RV Q              +  
Sbjct: 324 ACVNCEGHDDDCFDPAINTALKREIKAAKKSAVPENYIYRVIQFAKQGYTSMSFKTYDTD 383

Query: 499 W----TLFSPDEVSDLHDLYGKEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTM 552
           W     L    + S+       +F  A E         R + KV + + A  LW K+   
Sbjct: 384 WDSDAYLTVSGQNSNNSVSLKDDFLRAVEQDGDWHLTARKDGKVLKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            + +  P + F    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEYMF----LDDTACNLASINLLPYRN 499

Query: 613 NN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +   D      T+R    VL+  + +     ++  K ++ +R +GLG       L    
Sbjct: 500 ADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIAKLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------------G 713
           IPY S E   I       ++  A + S E+A E GA++ +                   G
Sbjct: 560 IPYDSDEGRAICAALTAIMTGTAYATSAEMASELGAFADYDRNAQNMLRVMRNHRRAAYG 619

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+A    + A+   ++  WD   +  +  G RN+    IAPT TI 
Sbjct: 620 DKDGYEKLAVNPVPLVASDLKQQALADHAKAAWDRAIELGEEHGYRNAQATVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSEAQLAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     I P  LK                 +AF+I 
Sbjct: 740 NLNQAPGINPGSLKAKGFTDDKIAALNAALKSAFDIK 776



 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 48/153 (31%), Gaps = 11/153 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +VK         +N F    L       + + +   +  G  ++     +  +   +   
Sbjct: 788 WVKETFGFTDEQLNDFSFEMLPALGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 847

Query: 848 A--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I+  +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 848 ASPCGKIGKRSLSINSHIQMMAAAQPFISGAISKTINMPNDATVEDAKGAYMLSWKLALK 907

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
                R  S  S   ++    D + +     + 
Sbjct: 908 ANALYRDGSKLSQPLNSSLLADVEDDEDEALEQ 940


>gi|328543987|ref|YP_004304096.1| ribonucleotide-diphosphate reductase alpha subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326413730|gb|ADZ70793.1| Ribonucleotide-diphosphate reductase alpha subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 1229

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/622 (20%), Positives = 210/622 (33%), Gaps = 112/622 (18%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G++
Sbjct: 175 YYVDFQTGELTKSASAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 235 FSRLRGEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIESY 293

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           ++                                 +   DD          +R       
Sbjct: 294 INWKVKEEQKVAALVTGSRICQKHLSAIMKACVNCQADNDDCFDPAKNPALKREIRAAKK 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEI------AY 522
             +P+ +++RV Q              +  W   +   VS  +                 
Sbjct: 354 MMVPENYIRRVIQFARQGYTAIEFPTYDTDWDSEAYLTVSGQNSNNSVRVTDGFLSAVVT 413

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +       R + KV + I A  LW ++    + +  P I +    N        G + +S
Sbjct: 414 DGSWDLTARRDGKVMKTIKARELWEQIGYAAWASADPGIQYHTTINDWHTCPASGEIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           N C+E        +   CNL S+NLL     +  FD +      R    VL+  + +   
Sbjct: 474 NPCSEYMF----LDDTACNLASLNLLQFRRADRSFDVEAYEHATRLWTIVLEISVLMAQF 529

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
              +  + ++  R +GLG       L    IPY S E   I       ++  A + S E+
Sbjct: 530 PSREIAELSYRFRTLGLGYANIGGLLMTSGIPYDSAEGRAICGALTAIMTGVAYATSAEM 589

Query: 702 AQERGAYSSFKGSLWDQGVFP----------IDSIGLLAEVRDELAMNRT--------SR 743
           A E GA+  +  +                  +D    L      L             +R
Sbjct: 590 AGELGAFPGYAENAEHMLRVMRNHRRAAYGEVDGYEKLHTNPVPLDHASCPDKVLIERAR 649

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTV 801
             WD   +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F +
Sbjct: 650 AAWDRALELGEKHGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 709

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIP--------------DDLKKIH 845
           +N  +   L+     +  +     Y    GSI     I               D +K   
Sbjct: 710 INRAVPEALRVLGYSESQIAEIEAYAVGHGSIDQSPGINPTALRAKGFTEATIDKIKASL 769

Query: 846 ATAFEID---PMWLI---ESAS 861
             AF+I      W +   + A+
Sbjct: 770 KAAFDIKFVFNRWTVGDEQMAA 791



 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 11/112 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAFE--------IDPMWLI 857
           + L         + +   +  G  ++     +  +   +   A          +     I
Sbjct: 805 DLLTHIGFTKAEIEAANTHVCGAMTLEGAPHLKQEHYPVFDCANPCGKIGKRFLSVDSHI 864

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              +  Q +I  A S  + + +E + +     Y  +W + LK     R  S 
Sbjct: 865 RMMAAAQPFISGAISKTINMPNEATVEDCKEAYMLSWRLALKANALYRDGSK 916


>gi|56697002|ref|YP_167364.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria
           pomeroyi DSS-3]
 gi|56678739|gb|AAV95405.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Ruegeria pomeroyi DSS-3]
          Length = 1214

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/605 (20%), Positives = 209/605 (34%), Gaps = 105/605 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T  +S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 167 HYVDYKTGKLTKSDSAYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G       GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 227 FSHLRAEGES-LSGGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQF 285

Query: 463 LDLRKNTGDDRR------RTHDMNTA---------------------------------- 482
           +  +              + H+                                      
Sbjct: 286 IQWKVLEEQKVASIVAGSKMHEKMLNGIFAAIRAWDGAEVDAYDPAVNEGLKAAIREAKK 345

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYEN 524
             IP+ ++KRV                +  W   + + VS    +        F  A E 
Sbjct: 346 VAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTNAFLKAVEK 405

Query: 525 Y--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R   KV + + A  LW K+    +    P I F D  N        G +  S
Sbjct: 406 DADWELINRVNGKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   +       ++  A + S E+A
Sbjct: 522 SKEIAQLSYDFRTLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIA 581

Query: 703 QERGAYSSFK------------------GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            E G ++ ++                  G         +  + L      +  +   +  
Sbjct: 582 GELGPFAGYERNAANMLRVIRNHRTAAYGKANGYEQLSVKPVPLDHSNCPDPRLVELAMA 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 SWDEALSLGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKI---HA 846
           N  +   L+        +   + Y    G+IGN   I           P++L+K+     
Sbjct: 702 NRSVPAALENLGYSSAQIEEIVSYAVGHGTIGNAPGINHTSLTGHGFGPNELRKVDAALE 761

Query: 847 TAFEI 851
           +AF+I
Sbjct: 762 SAFDI 766



 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 13/150 (8%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------ID 852
           N    + L+      + + +   +  G+  +     + ++   I   A          + 
Sbjct: 792 NDPTFDLLRHLGFTKKDIDAANDHVCGTMTLEGAPHLSEEHYAIFDCANPCGKKGKRFLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VDSHITMMAAAQSFISGAISKTINMPNNATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKST--LKGVDGKLNAVPVTDPNSSTHSLG 939
             +   ++  D     +    P +    L 
Sbjct: 912 PLAAALIEDDDEAAEVLETGTPAAKAAVLA 941


>gi|110680377|ref|YP_683384.1| ribonucleotide-diphosphate reductase subunit alpha [Roseobacter
           denitrificans OCh 114]
 gi|109456493|gb|ABG32698.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Roseobacter denitrificans OCh 114]
          Length = 1214

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 117/577 (20%), Positives = 202/577 (35%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 167 HYVDYKTGKLTRSKSSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTN 226

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G       G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 227 FSSLRGEGEG-LSGGGRSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 285

Query: 463 LDLR-----------------------------KNTGDDRRRTHDMNTANW--------- 484
           ++ +                                G +         A           
Sbjct: 286 INWKVVEEQKVASIVAGSKMHEQKLNLLFEAIKTWDGAEEDAYDPSKNAALKQAIREAKK 345

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYEN 524
             IP+ ++KRV                +  W   +   VS    +        F  A E 
Sbjct: 346 VAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLKAVEE 405

Query: 525 Y--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + KV + I A  LW K+    +    P I + D  N        G +  S
Sbjct: 406 DADWDLINRVDGKVTKTIKARDLWEKVGHAAWACADPGIQYHDTVNDWHTCPADGEIRGS 465

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F  +      R     L+  + +    
Sbjct: 466 NPCSEYMF----LDDTACNLASMNLLTFLKDGEFQIEDYMHAARLWTVTLEISVMMAQFP 521

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   I       ++  + + S E+A
Sbjct: 522 SKEIAQRSYDFRTLGLGYANIGGLLMNMGHSYDSAEGRAICGALTAIMTGVSYATSAEMA 581

Query: 703 QERGAYSSFKGS------------LWDQGVF------PIDSIGLLAEVRDELAMNRTSRL 744
            E G +  +  +                G         ++ + L  +   +  M   +R 
Sbjct: 582 GELGPFPGYAKNADNMLRVIRNHRHAAYGKVGGYEDLSVNPVPLDYKSCPDARMIEVARG 641

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 642 AWDQALELGQRHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 701

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
           N  +   L++       +   + Y  G  +IGN   I
Sbjct: 702 NQSVPGALEKLGYGSAQIEEIVSYAVGHATIGNAPGI 738



 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------ID 852
           N    + L+      + + +   +  G+  +     + D+   I   A          + 
Sbjct: 792 NDPSFDLLRHLGYSKKDIEAANDHVCGTMTLEGAPFLKDEHLSIFDCANPCGKKGKRFLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VDSHIHMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D +  A  +    +   +  +  
Sbjct: 912 PLAASLVEDDEDAAETLESGTAHEKAQVLAE 942


>gi|1617015|emb|CAA69026.1| ribonucleotide reductase RNR1 like protein [Arabidopsis thaliana]
          Length = 236

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 23/246 (9%)

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           G+   D   ++   R            W  L+  +   G+RNS  +A  PTA+ + I G 
Sbjct: 1   GILQPDMWNVIPSDR----------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGN 50

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN-IERI 837
           ++  +P   N+Y +  +SG+F VVN  L+++L    LW   + + L   +GSI   + R 
Sbjct: 51  NECFEPYTSNIYSRXVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVTCLLRY 110

Query: 838 PDDLKKIHATAFE-IDPMWLIESASRRQKWIDQAQS--LNLYLDEPSGKKLDFIYRQAWL 894
           PDDLK I+ T +E I     +  A+     IDQ+Q   L  + +  S      ++   W 
Sbjct: 111 PDDLKAIYRTVWEIITXRQWVNWAADCGCNIDQSQGLKLTTWTNPTSQNSF--VHFYTWK 168

Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA------VPVTDPNSSTHSLGIPSSCTSD 947
              KT  YYLRSR+A    K T+     K           V + ++ T    +  S T+ 
Sbjct: 169 RVWKTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNP 228

Query: 948 TECEVC 953
            EC  C
Sbjct: 229 EECLAC 234


>gi|144898200|emb|CAM75064.1| Ribonucleotide reductase large subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1208

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 120/639 (18%), Positives = 216/639 (33%), Gaps = 109/639 (17%)

Query: 303 DRYFLHINGSRIEMPQAFFM-RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN- 360
              +    G            R  M   L        + +++N    + +    P+  + 
Sbjct: 116 TWTYWGWKGGYFSSEDDALAFRDEMAFMLANQMGAPNSPQWFNTGLHWAYGIDGPSQGHY 175

Query: 361 -------------SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDW 404
                        S   HPQ  +CF+ ++ D   +  GI       A L KY  G G ++
Sbjct: 176 YVDHKTGKLTRSKSSYEHPQPHACFIQSIEDDLVNEGGIMDLWVREARLFKYGSGTGTNF 235

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
           + +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E F+
Sbjct: 236 SKLRGEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAFI 294

Query: 464 DLRKNT-------------------------------------GDDRRRTHDMNT----- 481
           + +                                         D +             
Sbjct: 295 NWKVVEEQKVAALVAGSKLAQKHLGEVMASMREWDGAADSDARFDPKLNKRLKKAIIGAR 354

Query: 482 ANWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAY----- 522
              IP+ +++R+ Q              N  W   +   VS  +         A+     
Sbjct: 355 GAMIPENYVQRMIQFARQGYLDIEFPVFNTDWDSEAYLTVSGQNSNNTVRVTDAFLNAVI 414

Query: 523 -ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
            +       R   KV + + A  LW ++    +    P I F    N        G +++
Sbjct: 415 DDQDWVLKHRNSDKVKKNLKARDLWERIGEAAWACADPGIQFDTTINDWHTCPESGRINA 474

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINC 640
           SN C+E        +   CNL S+NLL+    +  FD +      R    VL+  + +  
Sbjct: 475 SNPCSEYMF----LDDTACNLASLNLLSFRRADASFDIEGFRHACRLWTMVLEISVLMAQ 530

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              EK  + ++  R +GLG       L    IPY S +   +       ++  +   S E
Sbjct: 531 FPSEKIAQLSYEFRTLGLGFANIGGLLMADGIPYDSQKGRALTGAITALMTGESYVTSAE 590

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTS 742
           +A E GA+  +  +         +                     L A+   + ++   +
Sbjct: 591 MAAELGAFPGYGANSAHMLRVIRNHRRAAYGLTSGYEGLDISPVPLDADNCPDSSLVAAA 650

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
           RL WD      +  G RN+    IAPT TI  +    +  I+P +  + + K    G F 
Sbjct: 651 RLAWDSALAMGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 710

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
           ++N  +   L+     +  +   ++Y  G  ++ +   I
Sbjct: 711 IINRMVPEALRSLGYAESDVAEIIRYAVGHATLRDAPGI 749



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 27/205 (13%)

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQ--NLYVKSNMSGDF---------TVVNSF 805
           G+ ++   A   T     +  V QS++ ++    ++ K  +  +F           ++  
Sbjct: 748 GINHNKLRAKGFTDE--VLEKVEQSLEAAFDIKFVFNKYTLGAEFCTEVLKIPAAKLDDL 805

Query: 806 LVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA---------FEIDPM 854
             + L         + +   Y  G  ++     +  +   +   A         F +   
Sbjct: 806 SFDLLAHLGFSKADIDAANTYCTGAMTLEGAPFLKAEHLAVFDCASPCGKIGKRF-LSAE 864

Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVE 912
             I   +  Q +I  A S  + +    S +     Y  +W +GLK     R  S  +   
Sbjct: 865 SHIHMMAAAQPFISGAISKTINMPNSASVEDCKDAYMLSWRLGLKANALYRDGSKLSQPL 924

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHS 937
           ++ L    G L       P ++   
Sbjct: 925 QAALLDDAGALEEEVTNAPLAARAE 949


>gi|307717949|ref|YP_003873481.1| vitamin B12-dependent ribonucleotide reductase NrdJ [Spirochaeta
           thermophila DSM 6192]
 gi|306531674|gb|ADN01208.1| vitamin B12-dependent ribonucleotide reductase NrdJ [Spirochaeta
           thermophila DSM 6192]
          Length = 1120

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/558 (20%), Positives = 201/558 (36%), Gaps = 85/558 (15%)

Query: 363 TRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+  V DD     GI  AL   A + KY  G G++++ +R  G  + G  G
Sbjct: 163 YSRPQPHACFILDVEDDLVGEGGIMDALHREARIFKYGSGTGSNFSKIRAEGEPLSG-GG 221

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR----- 473
            S G++ FLKV + +A A+  G   R+ A    L+  H D+  F+  +            
Sbjct: 222 MSSGLMSFLKVFDRSAAAIKSGGTTRRAAKMVVLDVDHPDILTFVRWKVEEEYKVASLVA 281

Query: 474 ---------------RRTHDMNTANWIPDLFMKRVTQNAGWTLFS-------PDEVSDLH 511
                           R+     A  + D   + +                      +  
Sbjct: 282 GSRLVARHAREILSAYRSEGDVGAAAVRDAVGRALEAGVPEQFVHQVLRLAEEGMGPEEF 341

Query: 512 DLYGKEFE-IAYE------------------------NYERQADRGEIKVFRKISAVALW 546
            +Y  ++E  AY                                R   +V R + A  LW
Sbjct: 342 PVYTTDWEGEAYATVSGQSSNNSVRVPHEFMLAVQEDREWPLTARTTGEVVRTVRARDLW 401

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +++   +    P + F    N        G + +SN C+E        +   CNL S+N
Sbjct: 402 NEIVLAAWRCADPGLQFDTTINEWHTCPADGRIRASNPCSEYMF----LDDTACNLASLN 457

Query: 607 LLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           LLA +     +FD +     +     +L+  + +      +  + ++ +R +GLG     
Sbjct: 458 LLAFYDEEEGRFDVESFVHAVDIWTLILEISVVMAQFPSAEVARRSYLYRTLGLGFANLG 517

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---------- 714
           S L ++ +PY S E   +A      ++  A   S  +A E G +  F+ +          
Sbjct: 518 SLLMVMGLPYDSEEGRAVAGAIAAIMTGRAYHMSARMAAEWGPFPRFEANREHMLRVIRN 577

Query: 715 --LWDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
                +   P +  GL      L        +  T+R  WDE  +  +  G RN+   AI
Sbjct: 578 HARAARHAPPEEYEGLSVTPMGLDPDHTPGYLLETARRVWDEALEWGERHGFRNAQVSAI 637

Query: 767 APTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           APT TI  +    +  I+P Y  + + K    G F ++N  +   L++     E +   +
Sbjct: 638 APTGTIGLLMDCDTTGIEPDYALVKFKKLAGGGYFKIINRSVPPALRRLGYSAEQVEEIV 697

Query: 825 KYH--DGSIGNIERIPDD 840
           +Y    G++     +  +
Sbjct: 698 RYCVGRGTLKGAPGVSYE 715



 Score = 91.8 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 11/127 (8%)

Query: 830 SIGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880
           ++     + ++   +  TA          I     I   +  Q ++  A S  + +    
Sbjct: 794 TLEGAPHLREEHLPVFDTATPSGRKGSRAISWRGHILMMAAVQPFVSGAISKTINMPQSA 853

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           + + ++  Y  +W   LK     R  S  S  +  +     +  A  V            
Sbjct: 854 TVRDVEEAYLLSWRSMLKAVALYRDGSKLS--QPLVGAGSARDRAAEVIAETERGVGTAR 911

Query: 941 PSSCTSD 947
           P+    D
Sbjct: 912 PAGRVED 918


>gi|116328172|ref|YP_797892.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116120916|gb|ABJ78959.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 1196

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/572 (19%), Positives = 198/572 (34%), Gaps = 99/572 (17%)

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                    S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +R
Sbjct: 180 TTGKLVKSTSAYEHPQPHACFIQSVDDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
           G    + G  GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+E F+D + 
Sbjct: 240 GENEPLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIESFIDWKV 298

Query: 468 NTGDD----------RRRTHDMNTANW----------------------------IPDLF 489
                            R  +   +                              IPD +
Sbjct: 299 TEEKKVASLVTGSILNNRHLNAIMSACYEMEGEDRFDPKKNPSLKKNILEAKKVLIPDNY 358

Query: 490 MKRVTQ--------------NAGWTLFSPDEVSDLHDL--------YGKEFEI-----AY 522
           +KRV                   W   + + VS  +          +    E       Y
Sbjct: 359 IKRVIDLAKQGYKEILFEELTTDWQSDAYNTVSGQNSNNSVRLTNEFMAAVEQDQPWNLY 418

Query: 523 ENYERQADRGEIKVFR---KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              E++  + E +  +    + A  LW K+    + +  P   +    N        G +
Sbjct: 419 FRTEKEKAKFEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGSI 478

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVID 637
           ++SN C+E        +   CNL S NL          FD +      R    +L+  + 
Sbjct: 479 NASNPCSEYMF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCRLWTIILEISVT 534

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +     ++  + ++  R +GLG     S L +L IPY S EA+ I       +   A + 
Sbjct: 535 MAQFPSKEIAELSYKFRTLGLGYANLGSVLMILGIPYDSQEAMAITGAISSIMHMTAYAT 594

Query: 698 SVELAQERGAYSSFKGSL------------WDQGVFPIDSIGLLAEVRD------ELAMN 739
           S E+A+E+G ++ +  +                     D   L               + 
Sbjct: 595 SAEMAKEQGPFTGYAKNKKHMLRVIRNHRRAAYNAPSRDYENLTITPIGINPAFCPSYLL 654

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           + ++   D   +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G
Sbjct: 655 KAAQEDADFALELGEKHGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGG 714

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            F ++N  +   LK+       + + + Y  G
Sbjct: 715 YFKIINQSVPYGLKKLGYSTSEIEAIVNYCKG 746



 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 20/178 (11%)

Query: 788 NLYVKSNMSGDFTVV---------NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIER 836
             + K N+  +F +          N+   + L+      E +     Y  G+  I N   
Sbjct: 786 FAFNKFNLGENFLIKDLGITKEVFNAPGFSLLEHLGFTKEEINKANDYVCGTMTIENAPF 845

Query: 837 IPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           + +    +   A +        +     I   +  Q +I  A S  + L  E + + +  
Sbjct: 846 LKEKDYPVFDCANKCGKYGKRFLSYESHIHIMAAAQPFISGAISKTINLPEEATIEDIKD 905

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            Y  +W M +K     R  S  S   +++  +   +      +   +  S        
Sbjct: 906 AYFLSWKMMIKANALYRDGSKLSQPLNSVLELLNGIEVDDRDEIREAMLSKDPVQIAE 963


>gi|116330897|ref|YP_800615.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124586|gb|ABJ75857.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 1196

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/572 (19%), Positives = 198/572 (34%), Gaps = 99/572 (17%)

Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                    S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +R
Sbjct: 180 TTGKLVKSTSAYEHPQPHACFIQSVDDDLVNDGGIMDLWVREARLFKYGSGTGTNFSHLR 239

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467
           G    + G  GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+E F+D + 
Sbjct: 240 GENEPLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIESFIDWKV 298

Query: 468 NTGDD----------RRRTHDMNTANW----------------------------IPDLF 489
                            R  +   +                              IPD +
Sbjct: 299 TEEKKVASLVTGSILNNRHLNAIMSACYEMEGEDRFDPKKNPSLKKNILEAKKVLIPDNY 358

Query: 490 MKRVTQ--------------NAGWTLFSPDEVSDLHDL--------YGKEFEI-----AY 522
           +KRV                   W   + + VS  +          +    E       Y
Sbjct: 359 IKRVIDLAKQGYKEILFEELTTDWQSDAYNTVSGQNSNNSVRLTNEFMAAVEQDQPWNLY 418

Query: 523 ENYERQADRGEIKVFR---KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
              E++  + E +  +    + A  LW K+    + +  P   +    N        G +
Sbjct: 419 FRTEKEKAKFEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGSI 478

Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVID 637
           ++SN C+E        +   CNL S NL          FD +      R    +L+  + 
Sbjct: 479 NASNPCSEYMF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCRLWTIILEISVT 534

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +     ++  + ++  R +GLG     S L +L IPY S EA+ I       +   A + 
Sbjct: 535 MAQFPSKEIAELSYKFRTLGLGYANLGSVLMILGIPYDSQEAMAITGAISSIMHMTAYAT 594

Query: 698 SVELAQERGAYSSFKGSL------------WDQGVFPIDSIGLLAEVRD------ELAMN 739
           S E+A+E+G ++ +  +                     D   L               + 
Sbjct: 595 SAEMAKEQGPFTGYAKNKKHMLRVIRNHRRAAYNAPSRDYENLTITPIGINPAFCPSYLL 654

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
           + ++   D   +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G
Sbjct: 655 KAAQEDADFALELGEKHGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGG 714

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            F ++N  +   LK+       + + + Y  G
Sbjct: 715 YFKIINQSVPYGLKKLGYSTSEIEAIVNYCKG 746



 Score = 88.0 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 20/178 (11%)

Query: 788 NLYVKSNMSGDFTVV---------NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIER 836
             + K N+  +F +          N+   + L+      E +     Y  G+  I N   
Sbjct: 786 FAFNKFNLGENFLIKDLGITKEVFNAPGFSLLEHIGFTKEEINKANDYVCGTMTIENAPF 845

Query: 837 IPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           + +    +   A +        +     I   +  Q +I  A S  + L  E + + +  
Sbjct: 846 LKEKDYPVFDCANKCGKYGKRFLSYESHIHIMAAAQPFISGAISKTINLPEEATIEDIKD 905

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            Y  +W M +K     R  S  S   +++  +   +      +   +  S        
Sbjct: 906 AYFLSWKMMIKANALYRDGSKLSQPLNSVLELLNGIEVDDRDEIREAMLSKDPVQIAE 963


>gi|40965509|gb|AAR97976.1| B12-dependent ribonucleoside diphosphate reductase [Corynebacterium
           nephridii]
          Length = 1260

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 148/757 (19%), Positives = 261/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F LE +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSIV---FRLENINVPAQFSQVAADILAQKYFRKAGVPAQLKKIEENDVPSWLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              +  L  L  + +Y  +     +  ++     +    G         F  R  +   L
Sbjct: 85  VADEDALAKLPENERYGSEMDACQVFDRLAGTWTYWGWKGGYFASEVDAFAFRDELAYML 144

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P   +              S   HPQ  +CF+ +V
Sbjct: 145 ATQRVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSV 204

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G       GKS G++ FLK+ + 
Sbjct: 205 GDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEE-LSGGGKSSGLMSFLKIGDR 263

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL--------------------------- 465
            A A+  G   R+ A    ++  H D+EE++D                            
Sbjct: 264 AAGAIKSGGTTRRAAKMVVVDIDHPDIEEYIDWKVKEEQKVASLVTGSKIVKQHLTAIMK 323

Query: 466 ----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +   DD          +R       N +P+ ++KRV Q              +  
Sbjct: 324 ACVNCEADNDDCFDPAKNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIQFKTYDTD 383

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTM 552
           W   +   VS  +       +  +              R + +V + + A  LW K+   
Sbjct: 384 WDSEAYLTVSGQNSNNSVSLKDEFLRAVENDGDWNLTARRDGRVMKTLKARDLWEKIGYA 443

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611
            + +  P + +    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 444 AWASADPGLHYNTTMNDWHTCPTAGPIRASNPCSEYMF----LDDTACNLASINLLTYRN 499

Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +  FD      T R    VL+  + +     ++  + ++ +R +GLG       L    
Sbjct: 500 KDGSFDIAAYEHTARLWTIVLEISVMMAQFPSKEIARLSYEYRTLGLGYANIGGLLMTSG 559

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------GSLWDQG 719
           IPY S E   I       ++  A + S E+A+E G + S++              L   G
Sbjct: 560 IPYDSDEGRAICGALTAIMTGVAYATSAEMAKELGTFPSYEPNAEHMLRVIRNHRLAAHG 619

Query: 720 VFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+AE   +  M   +R  WD+  +  +  G RN+    IAPT TI 
Sbjct: 620 QTEGYEGLAVNPVALIAEDCPDQDMITHARAAWDKALELGEKHGYRNAQSTVIAPTGTIG 679

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 680 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 739

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           +I     I P  LK                 +AF+I 
Sbjct: 740 NINQAPGINPSSLKSKGFTDEKIEALNAALKSAFDIK 776



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 11/167 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +      +N F    L       + + +   +  G  ++     + ++   +   
Sbjct: 788 FCKDVLKLTDEQLNDFSFEMLPALGFAKKDIEAANIHVCGAMTLEGAPFLKEEHYAVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 848 ANPCGKIGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNDATVEDCKNAYMLSWKLALK 907

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                R  S  S   +     D +     V     +  +        
Sbjct: 908 ANALYRDGSKLSQPLNAALISDDEDEDDAVEALIEAPAAARAVQVTE 954


>gi|229090404|ref|ZP_04221647.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-42]
 gi|228692987|gb|EEL46705.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-42]
          Length = 563

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 133/567 (23%), Positives = 244/567 (43%), Gaps = 33/567 (5%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++  
Sbjct: 476 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAP 768
           ++  W++LK++V   G+ N+     AP
Sbjct: 536 TKEDWNQLKRQVMEHGLYNA-LTCSAP 561


>gi|308172805|ref|YP_003919510.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605669|emb|CBI42040.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
          Length = 384

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 90/409 (22%), Positives = 160/409 (39%), Gaps = 61/409 (14%)

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           E  Y+         + K    I A  L  K+  +  E+G+P+I F+   N      HV  
Sbjct: 4   EEMYDQLVDNPAVRKDK----IDARKLLEKLAVLRSESGYPYIMFEGNVNAEHANGHVSK 59

Query: 579 VHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFDYDKLASTIR 626
           V  SNLC+E+   S   E               CNLGS+N+     N         + ++
Sbjct: 60  VKFSNLCSEVLQASQVSEYTDYGEEDEIGLDISCNLGSLNVANVMKNG-----DFETIVK 114

Query: 627 TAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
            +V  L  V +  N        ++N   R+IGLG M     L    I Y S EA + A+ 
Sbjct: 115 LSVDALTRVSETSNIKNAPAVARANREMRSIGLGAMNLHGYLAQNGIAYESEEARDFANV 174

Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-M 738
               +++ ++  S+ELA+E    +  F+GS +  G +       D      +V      +
Sbjct: 175 FFALVNYWSLVRSMELAKETGSTFEGFEGSTYADGSYFDKYIAEDFRPKTEKVAKLFEGV 234

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
               R+ W  L+  V   G+ +S  +AIAPT +I+ +   + S+ P  + +  ++  +  
Sbjct: 235 EIPKRIDWVRLEVNVMLHGLYHSYRLAIAPTGSISYVQSATASVMPIMERIEERTYGNSK 294

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                                              +  +       +  A+++D   +++
Sbjct: 295 TYYP-------------------------------MPGLSPQNWFFYKEAYDMDMFKVVD 323

Query: 859 SASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +  Q+ +DQ  S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 324 MIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTK 372


>gi|319645697|ref|ZP_07999928.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
 gi|317392244|gb|EFV73040.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
          Length = 401

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 94/429 (21%), Positives = 175/429 (40%), Gaps = 63/429 (14%)

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P  V   +  +  E +IA    E   +    K  +K +A  L  K+  +  E+G+P+
Sbjct: 1   MFYPYSVYKEYRQHLDEMDIAKMYDELVENLNVRK--KKANARKLLEKLAILRSESGYPY 58

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------NSSSEETA------VCNLGSINLL 608
           + F D  N      H+ +V  SNLC+E+         +   E         CNLGSIN+ 
Sbjct: 59  LMFTDNVNRFHANSHISMVKFSNLCSEVLQSSKVSTYTDYGEEDDIGLDISCNLGSINIF 118

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
               N     D + +T++ A+  L +V +  N        K+N   R++GLG M     L
Sbjct: 119 NVMKN-----DSIKNTVKLAIDALTHVSNKTNITNAPAVAKANKLMRSVGLGAMNLHGFL 173

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS- 725
               I Y S EA + A+     ++F+++  S+E+A+E    Y  F+GS +  G +     
Sbjct: 174 AQNGIAYESEEARDFANTFFMMMNFYSLERSMEIAKEAGETYYQFEGSTYKSGEYFKKYE 233

Query: 726 -------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
                     + ++  +  +       W +LK+ V   G+ +S   AIAPT +I+ +   
Sbjct: 234 EQSFSPKYEKVKKLFGDQHIPTI--EDWKKLKQAVMKYGLYHSYRQAIAPTGSISYVQSS 291

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
           +  + P  + +  ++  +                                     +  + 
Sbjct: 292 TAGVMPIMERIEERTYGNSKTYYP-------------------------------MPGLS 320

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGL 897
                 +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I   A   G+
Sbjct: 321 AKNWFFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGI 380

Query: 898 KTTYYLRSR 906
           KT YY R++
Sbjct: 381 KTLYYARTK 389


>gi|196046537|ref|ZP_03113762.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225863314|ref|YP_002748692.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228914022|ref|ZP_04077644.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229183643|ref|ZP_04310866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BGSC 6E1]
 gi|196022721|gb|EDX61403.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225789936|gb|ACO30153.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228599886|gb|EEK57483.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BGSC 6E1]
 gi|228845627|gb|EEM90656.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 563

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 246/567 (43%), Gaps = 33/567 (5%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +      ID   +  +V+   A ++  
Sbjct: 476 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGIHIP 535

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAP 768
           ++  W++LK++V   G+ N+     AP
Sbjct: 536 TKEDWNQLKRQVMEHGLYNA-LTCSAP 561


>gi|325293115|ref|YP_004278979.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
 gi|325060968|gb|ADY64659.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           sp. H13-3]
          Length = 1272

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 129/667 (19%), Positives = 228/667 (34%), Gaps = 122/667 (18%)

Query: 303 DRYFLHINGSRIEMPQAFFM-RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN- 360
              +    G      +     R  +   L        + +++N    + +    P   + 
Sbjct: 116 TWTYWGWKGKYFSTEEDALAFRDELAYMLATQRVAPNSPQWFNTGLHWAYGIDGPGQGHF 175

Query: 361 -------------SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDW 404
                        S   HPQ  +CF+ +V D   +  GI       A L KY  G G+++
Sbjct: 176 YVDPFTGKLTKSKSSYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNF 235

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
           + +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++
Sbjct: 236 SYLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYI 294

Query: 464 DLRKNTGDDR----------------------------------------RRTHDMNTAN 483
           D + N                                             +R       +
Sbjct: 295 DWKVNEEQKVAALVTGSKIVAKHLKAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKD 354

Query: 484 WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYENY 525
            +P+ ++KRV Q              +  W   +   VS  +         +F  A EN 
Sbjct: 355 MVPENYVKRVIQFAQQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVEND 414

Query: 526 --ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R + KV + + A  LW K+    + +  P + F    N        G + +SN
Sbjct: 415 GDWNLTARKDGKVMKTLKARDLWEKISHAAWASADPGLHFNTTMNDWHTSPAEGPIRASN 474

Query: 584 LCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
            C+E        +   CNL S+NLL     A  + D       +R    VL+  + +   
Sbjct: 475 PCSEYMF----LDDTACNLASLNLLQFKDQATKRIDIADYEHAVRLWTVVLEVSVMMAQF 530

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
              +  + ++ +R +GLG       L    IPY S E   IA      ++  + + S E+
Sbjct: 531 PSRQIAERSYEYRTLGLGYANIGGLLMSSGIPYDSDEGRAIAGALTAIMTGVSYATSAEM 590

Query: 702 AQERGAYSSF------------------KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
           A E G +  F                   G  +      ++ + L+     +  +   + 
Sbjct: 591 AGELGPFPGFAPNRDNMLRVIRNHRRAAHGLSYGYEGLSVNPVALIHSDCTDQDLVAHAT 650

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTV 801
             WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F +
Sbjct: 651 AAWDKALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 710

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------H 845
           +N  +   L+     +  +     Y    G++     I P  LK                
Sbjct: 711 INRAVPESLRSLGYSESQIAEIEAYAVGHGNLNQAPAINPSSLKAKGFTDEKIEAVNGAL 770

Query: 846 ATAFEID 852
            +AF+I 
Sbjct: 771 KSAFDIK 777



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 43/130 (33%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      ++    N L+      + + +   +  G  ++     + ++   +   
Sbjct: 789 FLKGTLKVSDEQLSDMSFNLLEHLGFSKKDIEAANVHVCGAMTLEGAPFLKNEHLAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCGAAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|319783931|ref|YP_004143407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169819|gb|ADV13357.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1260

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 148/758 (19%), Positives = 258/758 (34%), Gaps = 125/758 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F L+ +      +       A  +  +   P    +  E  V + L   
Sbjct: 28  KNPDGSVV---FRLDNIDVPAQFSQVAADILAQKYFRKAGVPARLKKIEENDVPSFLWRS 84

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA---------FFM 322
              + +L  L    +Y  +     +  ++     +    G   +  +           +M
Sbjct: 85  VADEAELAKLPEAERYGSEIDARQVFDRLAGTWTYWGWKGGYFKASEEDARAFRDELAYM 144

Query: 323 ----RVAMGLALKETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTT 375
               RVA             A           ++       T   S   HPQ  +CF+  
Sbjct: 145 LATQRVAPNSPQWFNTGLHWAYGIDGPSQGHFYVDPFTGKLTKSKSSYEHPQPHACFIQG 204

Query: 376 VPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           V D   +  GI       A L KY  G G++++ +RG G  + G  G+S G++ FLK+ +
Sbjct: 205 VQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRGEGEKLSG-GGRSSGLMSFLKIGD 263

Query: 433 DTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL-------------------------- 465
             A A+  G   R+ A    ++  H D+EEF+D                           
Sbjct: 264 RAAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVNEEQKVASLVTGSKIVKKHLEAIM 323

Query: 466 -----RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NA 497
                 +  GDD          +R       + +P+ ++ RV Q              + 
Sbjct: 324 KACVNCEGNGDDCFDPSINSALKREIKAAKKSAVPENYIYRVIQFAKQGYSSMSFKTYDT 383

Query: 498 GW----TLFSPDEVSDLHDLYGKEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLT 551
            W     L    + S+        F  A E+        R + KV + + A  LW K+  
Sbjct: 384 DWDSDAYLTVSGQNSNNSVSLKDNFLRAVEDDADWHLTARKDGKVLKTLKARDLWEKIGY 443

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             + +  P + F    N        G + +SN C+E        +   CNL SINLL + 
Sbjct: 444 AAWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEYMF----LDDTACNLASINLLPYR 499

Query: 612 ANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
             +   D      T+R    VL+  + +     ++  K ++ +R +GLG       L   
Sbjct: 500 NADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIAKQSYEYRTLGLGYANIGGLLMTS 559

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------------ 712
            IPY S E   I       ++  A + S E+A E GA++ +                   
Sbjct: 560 GIPYDSDEGRAICAALTAIMTGMAYATSAEMAGELGAFADYDRNAQNMLRVMRNHRRAAY 619

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
           G         ++ + L+A    +  +   ++  WD   +  +  G RN+    IAPT TI
Sbjct: 620 GEKQGYEKLAVNPVPLVASDLKQQDLATHAKAAWDRAIELGEEHGYRNAQATVIAPTGTI 679

Query: 773 ANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--D 828
             +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    
Sbjct: 680 GLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSEAQIAEMEAYAVGH 739

Query: 829 GSIGNIERI-PDDLKKI-------------HATAFEID 852
           G++     I P  LK                 +AF+I 
Sbjct: 740 GNLNQAPAINPGALKAKGFTDEKIAALNAALKSAFDIK 777



 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +VK         +N F    L       + + +   +  G  ++     +  +   +   
Sbjct: 789 WVKETFGFTDEQLNDFSFEMLPALGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLAVFDC 848

Query: 848 A--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I+  +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ASPCGKIGKRSLSINSHIQMMAAAQPFISGAISKTINMPNDATVEDAKGAYMLSWKLALK 908

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
                R  S  S   ++    DG+ +     + 
Sbjct: 909 ANALYRDGSKLSQPLNSSLLADGEDDEDEAVEQ 941


>gi|89068838|ref|ZP_01156221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola granulosus HTCC2516]
 gi|89045608|gb|EAR51671.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Oceanicola granulosus HTCC2516]
          Length = 1226

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 109/566 (19%), Positives = 194/566 (34%), Gaps = 91/566 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +R  G  + G 
Sbjct: 181 SSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRAEGEKLSG- 239

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-- 474
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F++ +          
Sbjct: 240 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDFINWKVLEEQKVASI 299

Query: 475 ----RTHDMNTANW----------------------------------IPDLFMKRVTQ- 495
               + H+                                        IP+ ++KRV   
Sbjct: 300 VAGSKMHEQKLNAIFAAIRTWDGAEADAYDPKSNGALKEAIREAKKVAIPETYVKRVLDY 359

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEI------AYENYERQADRGEIKV 536
                        +  W   + + VS  +                 +       R +  V
Sbjct: 360 ARQGHTSIHFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLEAVRNDGSWDLISRTDGSV 419

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R + A  LW ++    +    P I F D  N        G +  SN C+E        +
Sbjct: 420 TRTVQARDLWEQIGHAAWACADPGIQFHDTVNAWHTCPEDGAIRGSNPCSEYMF----LD 475

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+NLL    +  F  ++     R     L+  + +     ++  + ++  R +
Sbjct: 476 DTACNLASMNLLTFHKDGAFLAEEYMHATRLWTLTLEISVMMAQFPSKEIAQLSYDFRTL 535

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
           GLG       L  + + Y S E   +       ++  A + S E+A E GA+S ++ +  
Sbjct: 536 GLGYANIGGLLMNMGLGYDSDEGRAMGGALTAIMTGVAYATSAEIAGELGAFSGYERNRE 595

Query: 717 DQGVFPIDSIG------------------LLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
                  +                     L      +  + + +   WDE     +  G 
Sbjct: 596 HMLRVIRNHRNAAYGKSDGYEALAVKPVALDHANCPDRRLVQLATAAWDEALALGEKHGY 655

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L      
Sbjct: 656 RNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRSVPAALDTLGYS 715

Query: 817 DEAMISDLKYH--DGSIGNIERIPDD 840
              +   + Y    G++     I  +
Sbjct: 716 AAQVDEIVNYAVGRGTLVGAPGISHE 741



 Score = 84.9 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + +    +   A          + 
Sbjct: 792 NDPTFDLLRHLGYSRADIDAANDFVCGTMTLEGAPHLAEAHYAVFDCANPCGKKGKRYLS 851

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + ++ + +     Y  +W +G+K     R  S  S 
Sbjct: 852 VEAHIRMMAAAQSFISGAISKTINMANDATIEDCQQAYELSWSLGVKANALYRDGSKLSQ 911

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D +     +   +    +  +  
Sbjct: 912 PLAAALIEDDEEARETLETGSVPEKAAVLAE 942


>gi|163731970|ref|ZP_02139416.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter
           litoralis Och 149]
 gi|161394268|gb|EDQ18591.1| ribonucleotide-diphosphate reductase alpha subunit [Roseobacter
           litoralis Och 149]
          Length = 912

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 124/605 (20%), Positives = 214/605 (35%), Gaps = 105/605 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 183 HYVDYKTGKLTRSKSSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTN 242

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G       GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+F
Sbjct: 243 FSSLRAAGEG-LSGGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEDF 301

Query: 463 LDLR-----------------------------KNTGDDRRRTHDMNTANW--------- 484
           ++ +                                G +         A           
Sbjct: 302 INWKVVEEQKVASIVAGSKMHEQKLNLLFDAIKTWDGAEEDAYDPSKNAALKQAIREAKK 361

Query: 485 --IPDLFMKRVTQ--------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYEN 524
             IP+ ++KRV                +  W   +   VS    +        F  A E+
Sbjct: 362 VAIPETYVKRVLDYAKQGHTSIEFPTYDTDWDSEAYSSVSGQNSNNSIRVTNAFLKAVED 421

Query: 525 Y--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                  +R + KV + I A  LW K+    +    P I + D  N        G +  S
Sbjct: 422 DADWELINRVDGKVTKTIKARDLWEKVGHAAWACADPGIQYHDTVNDWHTCPADGAIRGS 481

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL    + +F  +      R     L+  + +    
Sbjct: 482 NPCSEYMF----LDDTACNLASMNLLTFLKDGEFQIEDYMHASRLWTVTLEISVMMAQFP 537

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L  +   Y S E   I       ++  + + S E+A
Sbjct: 538 SKEIAQRSYDFRTLGLGYANIGGLLMNMGYSYDSTEGRAICGALTAIMTGVSYATSAEMA 597

Query: 703 QERGAYSSFKGSL------------WDQGVF------PIDSIGLLAEVRDELAMNRTSRL 744
            E G +  +  +                G         ++ + L  +   +  M   +R 
Sbjct: 598 GELGPFPGYAKNADNMLRVIRNHRTAAYGKVGGYEDLAVNPVPLDYKSCPDARMIDVARG 657

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 658 AWDQALELGQRHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 717

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI-----------PDDLKKI---HA 846
           N  +   L++       +   + Y  G  +IGN   I           P++L K+    A
Sbjct: 718 NQSVPGALEKLGYGSAQIEEIVSYAVGHATIGNAPGINHTSLAGHGFGPNELAKVDAALA 777

Query: 847 TAFEI 851
           +AF+I
Sbjct: 778 SAFDI 782



 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE--------ID 852
           N    + L+      + + +   +  G+  +     + D+   I   A          + 
Sbjct: 808 NDPSFDLLRHLGFSKKDIDAANDHVCGTMTLEGAPFLKDEHLSIFDCANPCGKKGKRFLS 867

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884
               I   +  Q +I  A S  + + ++ + + 
Sbjct: 868 VDSHIHMMAAAQSFISGAISKTINMPNDATIED 900


>gi|300022474|ref|YP_003755085.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524295|gb|ADJ22764.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1253

 Score =  198 bits (502), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 131/671 (19%), Positives = 229/671 (34%), Gaps = 131/671 (19%)

Query: 303 DRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
              +    G      E  QAFF  +   LA++       + +++N    + +    P   
Sbjct: 116 TWTYWGWKGGYFSSEEDAQAFFDEIRYMLAMQMAAPN--SPQWFNTGLHWAYGIDGPGQG 173

Query: 360 N--------------SGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGN 402
           +              S   HPQ  +CF+ +V DD     GI       A L KY  G G+
Sbjct: 174 HMYVDYQTGELVHSTSAYEHPQPHACFIQSVADDLVGDGGIMDLWVREARLFKYGSGTGS 233

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEE 461
           +++ +RG    + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE
Sbjct: 234 NFSSLRGANEKLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEE 292

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLF----MKRV--TQNAGWTLFSPDEVSD------ 509
           ++        + ++   + T + I        MK     +      F P +         
Sbjct: 293 YI---TWKVREEQKVAALVTGSKICQKRLKAVMKACVNCEAQDEACFDPLKNPKLKQAIR 349

Query: 510 --------------------------LHDLYGKEFE-IAY-------------------- 522
                                       D Y  +++  AY                    
Sbjct: 350 EAKRDGVPQNYVLRVIQFARQGYKDIQFDTYDTDWDSEAYLTVAGQNSNNSVRVTDEFLN 409

Query: 523 ----ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
               +       R   KV + I A  LW ++    + +  P I F    N        G 
Sbjct: 410 AVSADKDWNLISRLGNKVTKTIKARDLWEQIGFAAWASADPGIQFHTTINDWHTCPQSGQ 469

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVID 637
           + +SN C+E        +   CNL S+NLL     ++ FD +      R    VL+  + 
Sbjct: 470 IRASNPCSEYMF----LDDTACNLASLNLLRFRREDKSFDIESYEHGCRLWTIVLEISVL 525

Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697
           +      +  + ++ +R +GLG       L    IPY S E   I       ++  + +A
Sbjct: 526 MAQFPSRRIAELSYRYRTLGLGFANIGGLLMSAGIPYDSDEGRAICGAISAIMTGVSYAA 585

Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMN 739
           S E+A + GA+  ++ +  D      +                     L      +  + 
Sbjct: 586 SAEMAAKLGAFPGYEPNAADMLRVMRNHRRAAHGEAQGYEQLATAPVPLDHASLKDHRLG 645

Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797
             ++L WD   +  +  G RN+    +APT TI  +    +  I+P +  + + K    G
Sbjct: 646 EAAKLAWDRALELGQNHGYRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGG 705

Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI---------- 844
            F ++N  +   L+     +  +     Y    GS+     I    LK            
Sbjct: 706 YFKIINQSVPEALRTLGYRESEIAEVEAYAVGHGSLAQAPAINTATLKAKGFTDDALAKI 765

Query: 845 ---HATAFEID 852
               ATAF+I 
Sbjct: 766 EKGLATAFDIK 776



 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 12/139 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++   +      +N    +         + + +  ++  G  ++     +      +   
Sbjct: 788 FLTETLGVPADKLNDPSFDIFAHLGFSKKDVEAANEHVCGAMTLEGAPHLRAAHLPVFDC 847

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ +       Y  +W + LK
Sbjct: 848 ANPCGRKGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVDDCKQSYMLSWKLALK 907

Query: 899 TTYYLRSRSA-TSVEKSTL 916
                R  S  +    S +
Sbjct: 908 ANALYRDGSKLSQPLNSQV 926


>gi|118476920|ref|YP_894071.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416145|gb|ABK84564.1| ribonucleoside-diphosphate reductase class Ib alpha subunit
           [Bacillus thuringiensis str. Al Hakam]
          Length = 575

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 135/567 (23%), Positives = 246/567 (43%), Gaps = 33/567 (5%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +      ID   +  +V+   A ++  
Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGAYFEKYETIDYSPVTEKVQQLFAGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAP 768
           ++  W++LK++V   G+ N+     AP
Sbjct: 548 TKEDWNQLKRQVMEHGLYNA-LTCSAP 573


>gi|218289143|ref|ZP_03493379.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240726|gb|EED07905.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 223

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 118/253 (46%), Gaps = 42/253 (16%)

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           + LG+ G+   L    IP+ S   V+ ADE  E+I+F AI AS+ELA E+G Y  F+GS 
Sbjct: 1   MALGISGYHQYLAYKGIPWKSETHVKHADELFEWINFFAIEASMELACEKGPYPLFEGSD 60

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           W  G +         ++R      R     WD L++ V   G+RN+  +AIAPT++ + I
Sbjct: 61  WQTGRYF--------DLRGYRT--RPGGPDWDRLRREVAEHGVRNAYLVAIAPTSSTSLI 110

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G +  IDP Y   +++   +G                                      
Sbjct: 111 AGSTAGIDPVYARFFLEEKKNGVVP-------------------------------QTAP 139

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894
            + D     +  A  ID  W IE+ + RQ+ +DQ+QS NLY+    S ++   +Y  AW 
Sbjct: 140 NLNDKTFWYYKEAHTIDQRWSIEACAARQRHVDQSQSFNLYITPGISARQFLDLYMLAWK 199

Query: 895 MGLKTTYYLRSRS 907
            GLKT YY+RS+S
Sbjct: 200 RGLKTVYYVRSKS 212


>gi|298291309|ref|YP_003693248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Starkeya novella DSM 506]
 gi|296927820|gb|ADH88629.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Starkeya novella DSM 506]
          Length = 1241

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 127/643 (19%), Positives = 221/643 (34%), Gaps = 119/643 (18%)

Query: 303 DRYFLHINGSRI---EMPQAFFM----RVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355
              +    G      E  QAFF      +AM +A   +       +++N    + +    
Sbjct: 116 TWTYWGWKGGYFDSEEDAQAFFDEHRFMLAMQMAAPNSP------QWFNTGLHWAYGIDG 169

Query: 356 PTLFNSG--------------TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSG 398
           P+  +                  HPQ  +CF+ +V D   +  GI       A L KY  
Sbjct: 170 PSQGHFYVDYATGKLTRSKTSYEHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGS 229

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHI 457
           G G++++ +RG G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H 
Sbjct: 230 GTGSNFSALRGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHP 288

Query: 458 DVEEFLDLRKNTG------------------------------DDRRRTHDMNTA----- 482
           D+E ++D +                                  DD     + N A     
Sbjct: 289 DIETYVDWKVKEEQKVAALVTGSKTVAKHMKAVMKACVNCEGEDDDCFEPEKNPALKREI 348

Query: 483 -----NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
                  +P+ +++RV Q              +  W   +   V+  +       + A+ 
Sbjct: 349 RAAKRAQVPENYIRRVIQFARQGYTDIDFPIYDTDWDSEAYLTVAGQNSNNSVRVDDAFL 408

Query: 524 N------YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
                        R   KV + + A  LW K+    + +  P I F    N        G
Sbjct: 409 TAVEADGEWNLTSRTTGKVTKTLKAAELWEKIGYAAWASADPGIQFHTTINDWHTSPAGG 468

Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVI 636
            + +SN C+E        +   CNL S+NLL     +  FD +      R    VL+  I
Sbjct: 469 PIRASNPCSEYMF----LDDTACNLASLNLLQFRNADGTFDVESYEHACRLWTVVLEISI 524

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
            +     ++  K ++ +R +GLG       L    IPY S E           ++  + +
Sbjct: 525 LMAQFPSKEIAKLSYDYRTLGLGYANIGGLLMTSGIPYDSEEGRAYCGALTAIMTGVSYA 584

Query: 697 ASVELAQERGAYSSFK------------GSLWDQGVF------PIDSIGLLAEVRDELAM 738
            S E+A+E G +  +K                  G          + + L      E  +
Sbjct: 585 TSAEMAKELGPFPEYKPNATHMLRVIRNHRRAAYGEHGGYEGLATNPVPLDHAKVPEAIL 644

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMS 796
              ++  WD      +  G RN+    +APT TI  +    +  I+P +  + + K    
Sbjct: 645 VDHAKAAWDRALALGEEHGYRNAQTTLLAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGG 704

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           G F ++N  +   L+     +  +     Y    GSI     I
Sbjct: 705 GYFKIINRAVPEALRTLGYSESQIAEIEVYAVGHGSITQAPAI 747



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L       + + +   +  G  ++     +  +   +   A          +     I
Sbjct: 805 DLLSFLGFSRKDLEAANIHVCGAMTLEGAPFLKVEHYPVFDCANPCGRIGKRYLSVKSHI 864

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              +  Q ++  A S  + + +E + +     Y  +W + LK     R  S 
Sbjct: 865 FMMAAAQPFLSGAISKTINMPNEATVEDCKEAYLLSWRLALKANALYRDGSK 916


>gi|118590077|ref|ZP_01547481.1| ribonucleotide-diphosphate reductase alpha subunit [Stappia
           aggregata IAM 12614]
 gi|118437574|gb|EAV44211.1| ribonucleotide-diphosphate reductase alpha subunit [Stappia
           aggregata IAM 12614]
          Length = 1227

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/606 (19%), Positives = 206/606 (33%), Gaps = 106/606 (17%)

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDW 404
              F         S   HPQ  +CF+ +V D   +  GI       A L KY  G G+++
Sbjct: 176 YVDFQSGKLVKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNF 235

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
           + VR  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE++
Sbjct: 236 SHVRAEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEEYI 294

Query: 464 DLRKNTGDDR----------------------------------------RRTHDMNTAN 483
           + +                                               +R        
Sbjct: 295 NWKVKEEQKVAALVTGSKICQKHLSAIMRACVNCEADNGDCFDPAKNPALKREIRAAKKM 354

Query: 484 WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN----- 524
            +P+ +++RV Q              N  W   +   V+  +          + N     
Sbjct: 355 MVPENYIQRVIQFARQGFTKIEFPTFNTDWDSEAYLTVAGQNSNNSVRVTDGFLNAVVED 414

Query: 525 -YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R    V + + A  LW ++    + +  P + +    N        G + +SN
Sbjct: 415 STWDLTARRTGDVLKTVKAKELWEQIGYAAWASADPGLQYHTTINDWHTCLADGEIRASN 474

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHT 642
            C+E        +   CNL S+NL+     ++ FD D     +R    VL+  + +    
Sbjct: 475 PCSEYMF----LDDTACNLASLNLMQFRREDRSFDIDNYEHAVRLWTIVLEISVLMAQFP 530

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG       L    IPY S E   +       ++  A + S E+A
Sbjct: 531 SKEIAELSYKFRTLGLGYANIGGLLMTSGIPYDSDEGRALCGALTAVMTGVAYATSAEMA 590

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
            E GA+  +K +         +                     L      +  +   ++ 
Sbjct: 591 GELGAFPGYKKNANHMLRVMRNHRRAAYGEAEGYEGLNTAPVALDHASCPDKVLIERAQK 650

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD   +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 651 AWDRALELGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 710

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIPD--------------DLKKIHA 846
           N  +   L++    +  +     Y    GSI     +                 LK    
Sbjct: 711 NRAVPEALRKLGYSESEIGEIEAYAVGHGSIDQAPGVNPSALKTKGFSDESLTKLKDGMK 770

Query: 847 TAFEID 852
           +AF+I 
Sbjct: 771 SAFDIK 776



 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 829 TLEGAPFLKEEHYPVFDCANPCGRIGKRFLSVESHIRMMAAAQPFISGAISKTINMPNDA 888

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W + LK     R  S 
Sbjct: 889 TVEDCKEAYMLSWKLALKANALYRDGSK 916


>gi|85715492|ref|ZP_01046473.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
 gi|85697687|gb|EAQ35563.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
          Length = 1248

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 122/608 (20%), Positives = 215/608 (35%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++
Sbjct: 175 YYVDFKTGKMTKSKSAYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E++
Sbjct: 235 FSRLRGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEQY 293

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           +D                                 + +GDD          RR   +   
Sbjct: 294 IDWKVKEEQKVAALVTGSRINQKHLKAVMRACVNCEGSGDDCFVPEKNPALRREIKLARR 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             +PD ++KRV Q              +  W   +   VS  +       +  +      
Sbjct: 354 AQVPDNYIKRVIQFARQGYKEIDFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVET 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   KV + + A  LW K+    + +  P + F    N     +  G + +S
Sbjct: 414 DGDWNLIGRTNRKVTKTLKARELWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NL+  +     +FD D    T+R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLITFYDTASRRFDVDAYEHTVRLWTVVLEISVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              +   + ++  R +GLG       L  + + Y S E   +       ++  A   S E
Sbjct: 530 FPSKAIAELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALTAIMTGIAYKTSAE 589

Query: 701 LAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTS 742
           +A E GA+   K +                G         ++ + L      +  +   +
Sbjct: 590 MAGELGAFPGHKKNAGHMLRVIRNHRRAAHGQSNGYEALAVNPVPLDHASCPQANLIAHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              WD+     +  G RN+    +APT TI  +    +  I+P +  + + K    G + 
Sbjct: 650 TRAWDDALALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA- 846
           ++N  +   L+     +  +     Y    GS+ N   I            + + K+   
Sbjct: 710 IINRAVPEALRALGYRESEIAEIEAYAVGHGSLSNAPGINVSTLKAKGFTDEAIAKVEKA 769

Query: 847 --TAFEID 852
             TAF+I 
Sbjct: 770 LPTAFDIK 777



 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 47/167 (28%), Gaps = 11/167 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + S   + L           +   +  G  ++     +  +   +   
Sbjct: 789 FIRDTLGVDADALASPAFDLLAAIGFSRRECEAANVHICGAMTVEGAPHLKAEHYPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVEDCKSAYLLSWKLALK 908

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                R  S  S   ++    D   +   +        +        
Sbjct: 909 ANALYRDGSKLSQPLNSQLIADDDGDDDAIEALMDKPMAARATQVAE 955


>gi|145641093|ref|ZP_01796674.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274254|gb|EDK14119.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 354

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 152/380 (40%), Gaps = 46/380 (12%)

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608
           +     TG  +I   D CN  SP       V  SNLC EI L +   +      G I L 
Sbjct: 1   MQERASTGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALC 60

Query: 609 A---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
                      + D+L      AVR LD ++D   + +  AK+S+   R++G+G++ +  
Sbjct: 61  TLSAFNLGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAY 120

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725
            L    + Y+   A ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+
Sbjct: 121 YLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDT 180

Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785
                +              W+ L+K ++  G+RNS   A+ P+ T + I   +  I+P 
Sbjct: 181 YKKDLDA----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPP 236

Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845
             ++ +K++  G    V     N      + +  ++ D+  +DG +              
Sbjct: 237 RGHVSIKASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------- 278

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLK 898
                             QK++DQA S N   D       +   K L      A+  GLK
Sbjct: 279 -------------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLK 325

Query: 899 TTYYLRSRSATSVEKSTLKG 918
           T YY  +R      +  L  
Sbjct: 326 TLYYQNTRDGAEDVQEDLDD 345


>gi|119485474|ref|ZP_01619802.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
 gi|119457230|gb|EAW38356.1| ribonucleotide reductase subunit alpha [Lyngbya sp. PCC 8106]
          Length = 328

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 19/333 (5%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
               +++++  DG+    +  ++  +V  AC GL   +   + +     + DG++  +++
Sbjct: 11  STKSEIQVIRRDGSRADLDISKIRNVVNWACEGLDA-NPITLEAGLTTRLRDGVTTREIQ 69

Query: 200 TALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             LI  +  L    EP++  V  R  +  L ++ L         A        Y      
Sbjct: 70  DNLINCALELCSPSEPDWRYVAGRLHIWSLWKDTL---------ANRGYRYEDYARTVES 120

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
            ++       +       +L      +  + D  ++Y G  +L  RY L       E+PQ
Sbjct: 121 KVKNHEYDSRILT-YNPEELQQAGTWIDPQWDKDYDYAGAVLLTKRYLLTN-----ELPQ 174

Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376
              +  A+ LA+ E    +   A +FY  ++      +TP L N    +  LSSCF+T++
Sbjct: 175 EALLTCALLLAVVEKPENRLFWARQFYEAIAKRKISLATPILGNLRIPNGSLSSCFITSM 234

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D+L  IF A+++ A ++K  GG+G + + VR  G+ + G    S GVIP++K+ NDTA+
Sbjct: 235 DDNLESIFDAIKDAARISKNGGGVGTNVSRVRATGSWVMGKENTSGGVIPWIKLLNDTAI 294

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469
           AVNQGG+R GA+   L+ WH+DV EFL+++   
Sbjct: 295 AVNQGGRRAGAITVSLDVWHLDVPEFLEMQTEN 327


>gi|222148917|ref|YP_002549874.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           vitis S4]
 gi|221735903|gb|ACM36866.1| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           vitis S4]
          Length = 1256

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 117/573 (20%), Positives = 210/573 (36%), Gaps = 94/573 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT------- 469
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENYIDWKVKEEQKVAAL 307

Query: 470 -----------------------GDDRRRTHDMNTA----------NWIPDLFMKRVTQ- 495
                                   +D     + N A          + +P+ ++KRV Q 
Sbjct: 308 VTGSKIVAKHLKAIMKACVNCSADNDACFDPNENPALKREIRAAKKDMVPENYVKRVIQF 367

Query: 496 -------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYEN--YERQADRGEIKV 536
                        +  W   +   VS  +         +F  A E+        R + +V
Sbjct: 368 AQQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSLRDDFLRAVEDDGNWNLTARRDGRV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N        G + +SN C+E        +
Sbjct: 428 MKTLKARDLWEKISYAAWASADPGLHFNTTMNDWHTCPAAGPIRASNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S+NLL        + D       +R    VL+  + +      +  + ++ +R
Sbjct: 484 DTACNLASLNLLQFKDADTKKIDIADYEHAVRLWTVVLEVSVMMAQFPSRQIAELSYEYR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--- 711
            +GLG       L    IPY S E   I       ++  + + S E+A E G +  +   
Sbjct: 544 TLGLGYANIGGLLMSTGIPYDSAEGRAICGALSAIMTGVSYATSAEIASELGPFPGYAPN 603

Query: 712 ---------KGSLWDQGVF------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G+        +D + L+     + A+   ++  WD+  +  +  
Sbjct: 604 RDNMLRVIRNHRRAAHGLSDGYEGLAVDPVPLVHAECSDPALIAHAKAAWDKALELGEQH 663

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  I+P +  + + K    G F ++N  +   L+   
Sbjct: 664 GYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLG 723

Query: 815 LWDEAMISDLKYH--DGSIGNIERI-PDDLKKI 844
             +  +     Y    G++     + P  LK  
Sbjct: 724 YTESQLAEIEAYAVGHGNLNQAPGVNPGSLKAK 756



 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     N L+      + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKETLGVSAEQLTDMSFNLLEHLGFAKKDIEAANIHVCGAMTLEGAPFLKKEHLAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCGAAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|146340435|ref|YP_001205483.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           sp. ORS278]
 gi|146193241|emb|CAL77257.1| ribonucleotide reductase large subunit [Bradyrhizobium sp. ORS278]
          Length = 1256

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/608 (20%), Positives = 212/608 (34%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+  V D   +  GI       A L KY  G G++
Sbjct: 179 YYVDYKTGKLTKSKSSYEHPQPHACFIQGVEDDLVNDGGIMDLWVREARLFKYGSGTGSN 238

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 239 FSRLRGEGEKLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAY 297

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           +D                                 + +GDD          RR   +   
Sbjct: 298 IDWKVKEEQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARR 357

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             +PD ++KRV Q              +  W   +   VS  +       +  +      
Sbjct: 358 ALVPDNYIKRVIQFARQGYKDIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVET 417

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   K+ + + A  LW K+    + +  P + F    N     +  G + +S
Sbjct: 418 DSDWNLVGRTNKKIVKTLKARDLWEKIGHAAWASADPGLHFNTTMNDWHTCKASGDIRAS 477

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NLL  +     QFD        R    VL+  + +  
Sbjct: 478 NPCSEYMF----LDDTACNLASANLLTFYDTRTKQFDVASYEHLCRLWTIVLEISVLMAQ 533

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              +   + ++  R +GLG       L  + + Y S E   +       ++  A   S E
Sbjct: 534 FPSKAIAELSYEFRTLGLGYANIGGLLMTMGLSYDSKEGRALCGALSAIMTGIAYRTSAE 593

Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTS 742
           +A E GA+  +K +         +                     L      ++++   +
Sbjct: 594 MAGELGAFPGYKKNAAHMLRVIKNHRRAAKGEATGYEALSVAPVPLDHAHCPQVSLVSHA 653

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              WD+     +T G RN+    +APT TI  +    +  I+P +  + + K    G F 
Sbjct: 654 IQAWDDALALGETNGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 713

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA- 846
           ++N  +   L+     +  +     Y    GS+ N   I            + + K+   
Sbjct: 714 IINRAVPEALRALGYRESEIAEIEAYAVGHGSLSNAPGINASTLKAKGFTDEAIAKVEKA 773

Query: 847 --TAFEID 852
             TAF+I 
Sbjct: 774 LPTAFDIK 781



 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 11/149 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLI 857
             L         + +   +  G  ++     +  +   +   A          +     I
Sbjct: 811 ELLAAIGFTKREIEAANVHICGAMTVEGAPHLKAEHYAVFDCANPCGKIGKRYLSVESHI 870

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q +I  A S  + + ++ + +     Y  +W + LK     R  S  S   ++ 
Sbjct: 871 RMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWKLALKANALYRDGSKLSQPLNSQ 930

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
              D +     V        +        
Sbjct: 931 LISDDEDEDDAVESFYEKPMAARATQVSE 959


>gi|149918798|ref|ZP_01907285.1| Ribonucleoside-diphosphate reductase [Plesiocystis pacifica SIR-1]
 gi|149820399|gb|EDM79815.1| Ribonucleoside-diphosphate reductase [Plesiocystis pacifica SIR-1]
          Length = 1239

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/601 (19%), Positives = 214/601 (35%), Gaps = 117/601 (19%)

Query: 341 EFYNLLSSFHFMCSTPTLFNSG--------------TRHPQLSSCFLTTVPDD---LYGI 383
           +++N    + +  + P   +                  HPQ  +CF+  V DD     GI
Sbjct: 155 QWFNTGLHWAYGITGPAQGHYYCEPETGELRKSTNAYEHPQPHACFIQGVADDLVGEDGI 214

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                  A L KY  G G++++ +RG G  + G  G+S G++ FL++ +  A A+  G  
Sbjct: 215 MDLWVREARLFKYGSGTGSNFSQIRGEGEPLSG-GGRSSGLMSFLRIGDRAAGAIKSGGT 273

Query: 443 KRKGAVCAYLETWHIDVEEFLD------------------------------------LR 466
            R+ A    ++  H D+E+++D                                    L 
Sbjct: 274 TRRAAKMVVVDVDHPDIEQYIDWKVLEEQKVAALVTGSRICNENLNQILRACHVTDADLS 333

Query: 467 KNTGDDRRRTHDMNTAN------WIPDLFMKRV--------------TQNAGWTLFSPDE 506
                D R+   +  A        +P+ +++R                   GW   +   
Sbjct: 334 DAERFDARKNRPLRKAIKKARNLQVPENYIQRAIQLAQSGARELEFPEYTTGWDSDAYGT 393

Query: 507 VSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           VS  +         A+ +            R + KV R + A  LW K+    +    P 
Sbjct: 394 VSGQNSNNSVRLPDAFLHAVDADNTWDLTRRTDGKVARTLRAAELWDKIAFSAWSCADPG 453

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---------- 610
           + F    N      + G +++SN C+E        +   CNL S+NL+            
Sbjct: 454 LQFDTTINDWHTCPNSGRINASNPCSEYMF----LDDTACNLASLNLMKFVIDASTPGPR 509

Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +FD D +    R    VL+  + +      K    ++ +R +GLG     +   
Sbjct: 510 SADMLGEFDVDAIRHACRLWTIVLEVSVLMAQFPSHKIAALSYRYRTLGLGYANLGTYFM 569

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL------------- 715
           +  +PY S EAV I       ++    + S ELA + G +  ++ +              
Sbjct: 570 VRGVPYDSEEAVAICGGVSALMTGTCYATSAELADKHGPFPGYEENRDAMLRVIRNHRRA 629

Query: 716 -WDQGVFPIDSIGLLAE----VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
            +D      +S+  L       R    +   +R  WDE  +R +  G RN+    IAPT 
Sbjct: 630 AYDAPRSDYESLNTLPRGIDAQRCPNYLLTAARGAWDEALQRGEQSGYRNAQVTVIAPTG 689

Query: 771 TIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           TI  +    +  I+P +  + + K    G F ++N  +   L +    D  +   ++Y  
Sbjct: 690 TIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPGALSRLGYTDSQIDDIVRYCK 749

Query: 829 G 829
           G
Sbjct: 750 G 750



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 11/147 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           N L+      + +     +  G+  I     + D+   +   A          I PM  +
Sbjct: 818 NILEGLGFTAQDIQKANDWVCGTMTIEGAPHLRDEHLPVFDCANRCGRYGKRYIRPMAHV 877

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q ++  A S  + + +E +  ++  +YR++W MG+K     R  S  S   S  
Sbjct: 878 HMMAAAQPFLSGAISKTINMPNEATVGEVKKVYRESWNMGVKAIALYRDGSKLSQPLSAA 937

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSS 943
              D   +   + D  ++  +    ++
Sbjct: 938 LASDIAEDLDELEDGAAAIDAPRPATA 964


>gi|254453532|ref|ZP_05066969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
 gi|198267938|gb|EDY92208.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Octadecabacter antarcticus 238]
          Length = 1206

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 198/577 (34%), Gaps = 91/577 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G +
Sbjct: 150 HYVDYKTGKLTASKSSYEHPQPHACFIQSVKDDLVNEGGIMDLWVREARLFKYGSGTGTN 209

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G       GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF
Sbjct: 210 FSSLRASGES-LSGGGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEEF 268

Query: 463 LDLR---------------------KNTGDDRRRTH-------------------DMNTA 482
           ++ +                         D  R                           
Sbjct: 269 INWKVLEEQKVASIVAGSKMHEQKLNLIFDAIRTWDGKADDAYDPKVNPALKDAVREAKK 328

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             IP+ ++KRV                +  W   + + VS  +         A+      
Sbjct: 329 VCIPETYVKRVLDYARQGHTAIEFPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLKAVED 388

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
               +  +R   +V + I A  LW ++    +    P I + D  N        G +  S
Sbjct: 389 DANWKLINRKNGEVAKVIKARDLWEQVGHAAWACADPGIQYHDTVNAWHTCPEDGAIRGS 448

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           N C+E        +   CNL S+NLL  F + +F  +      R     L+  + +    
Sbjct: 449 NPCSEYMF----LDDTACNLASMNLLKFFKDGEFQVEDYMHASRLWTVTLEISVMMAQFP 504

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + +   R +GLG       L  +   Y S E   +A      ++  + + S E+A
Sbjct: 505 SKEIAQRSFDFRTLGLGYANIGGLLMNMGFGYDSDEGRSMAGALTAIMTGVSYATSAEIA 564

Query: 703 QERGAYSSFKGSL----------------WDQGVFPID--SIGLLAEVRDELAMNRTSRL 744
            E GA+S +  +                    G   +D   + L      +  +   +  
Sbjct: 565 GELGAFSGYGRNKDHMLKVIRNHRNAAYGASDGYEKLDIKPVPLDHANCPDARLIDIAMS 624

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WDE  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 625 TWDEALRLGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 684

Query: 803 NSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           N  +   L +             Y    G++GN   I
Sbjct: 685 NQSVPAALAKLGYSTSQAEEIQAYAVGHGTLGNAPGI 721



 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 11/155 (7%)

Query: 803 NSFLVNELKQRDLW--DEAMISDLKYHDGSIGNIERIPDDLKKIHATAF--------EID 852
           N    + LK       D  + +D      ++     + ++   +   A          + 
Sbjct: 775 NDPTFDLLKSLGFSKEDADLANDHVCGTMTLEGAPHLKEEHYVVFDCANPCGKTGKRYLS 834

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + + +  + +     Y  +W +G+K     R  S  S 
Sbjct: 835 VNSHIYMMAAAQSFISGAISKTINMANNATIEDCQKAYELSWSLGIKANALYRDGSKLSQ 894

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             +     D +  A  + + N    +  I      
Sbjct: 895 PLAAALIEDDEEAADILENGNIHAKAQVIAEKIIE 929


>gi|114704434|ref|ZP_01437342.1| ribonucleotide-diphosphate reductase alpha subunit [Fulvimarina
           pelagi HTCC2506]
 gi|114539219|gb|EAU42339.1| ribonucleotide-diphosphate reductase alpha subunit [Fulvimarina
           pelagi HTCC2506]
          Length = 1331

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 121/590 (20%), Positives = 214/590 (36%), Gaps = 98/590 (16%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F        +S   HPQ  +CF+ +V D   +  GI       A L KY  G G++
Sbjct: 177 HYVDFQTGELRASDSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSN 236

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 237 FSFLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENY 295

Query: 463 LDLRKNTGDDR----------------------------------------RRTHDMNTA 482
           ++ +    +                                          +R       
Sbjct: 296 INWKVREEEKVAALVTGSKTVAKNLKLILSACVNCEGPEGDCFDPNKNPALKRAVKDAKK 355

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYEN 524
             +P+ ++KRV Q              +  W   +   VS  +         +F  A EN
Sbjct: 356 AQVPENYVKRVIQFARQGFTDIEFPVYDTDWDSEAYLTVSGQNSNNSVSLTDDFLRAVEN 415

Query: 525 YERQ--ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
            E      R + KV + + A  LW ++    + +  P + F    N        G + +S
Sbjct: 416 DEEWKLIRRTDGKVHKTVKARELWDQIGYAAWASADPGLHFNTTMNDWHTCPAAGKIRAS 475

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDI 638
           N C+E        +   CNL S+NLL          +FD        R    VL+  + +
Sbjct: 476 NPCSEYMF----LDDTACNLASLNLLQFVDATSEAKRFDTASFEHATRLWTIVLEISVLM 531

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                 +  + ++ +R +GLG       L    IPY S     I       ++  A   S
Sbjct: 532 AQFPSREIARLSYDYRTLGLGFANIGGLLMSGGIPYDSRHGRAICGAISALMTGIAYKTS 591

Query: 699 VELAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNR 740
            E+A E G +  ++ +                G+        +D + L      +  ++ 
Sbjct: 592 AEMAGELGTFPDYERNAEHMSRVIRNHARAAHGIANGYEKLAVDPVPLDHASLADKRLST 651

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
            ++  W E  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G 
Sbjct: 652 RAKAAWTEAVELGEKFGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGY 711

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI-PDDLKKI 844
           F ++N  +   L+    + EA I++++ +    G++     I P  LK  
Sbjct: 712 FKIINRAVPEALRTLG-YSEAQIAEIEAYAVGHGNLNQAPAINPGSLKAK 760



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 19/140 (13%)

Query: 788 NLYVKSNMSGDFTV--------VNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
            ++ +  +  DF          +  F    L       + + +   +  G  ++     +
Sbjct: 782 FVFNRYTLGDDFMRQLGVSDEQLADFTFELLPHLGFSKKDIEAANIHVCGAMTLEGAPHL 841

Query: 838 PDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888
             +   +   A          +     I   +  Q +I  A S  + + +E + +  +  
Sbjct: 842 KAEHLPVFDCATPCGRIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCNAA 901

Query: 889 YRQAWLMGLKTTYYLRSRSA 908
           Y  +W + LK     R  S 
Sbjct: 902 YMLSWKLALKANALYRDGSK 921


>gi|301052990|ref|YP_003791201.1| ribonucleoside-diphosphate reductase subunit alpha, N-terminal
           domain-containing protein [Bacillus anthracis CI]
 gi|300375159|gb|ADK04063.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal domain
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 575

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/567 (23%), Positives = 244/567 (43%), Gaps = 33/567 (5%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629
           SNLCTEI     + E               CNLGS+N++    N      ++   +   +
Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427

Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
             L  V D+         KK+N    ++GLG M     L    I Y S EA E A     
Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741
            +++++I  S+E+A+E+   +  F  S +  G +       +   +  +V+     ++  
Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTNYSPVTEKVQQLFEGIHIP 547

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAP 768
           ++  W++LK++V   G+ N+     AP
Sbjct: 548 TKEDWNQLKRQVMEHGLYNA-LTCSAP 573


>gi|299133758|ref|ZP_07026952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Afipia sp. 1NLS2]
 gi|298591594|gb|EFI51795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Afipia sp. 1NLS2]
          Length = 1250

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/594 (20%), Positives = 211/594 (35%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL----------- 465
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D            
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVREEQKVAAL 307

Query: 466 --------------------RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ- 495
                                +  GDD          +R   +     + D  +KRV Q 
Sbjct: 308 VTGSKINQKHLKAIMKACVNCEGPGDDCYLPEKNPALKREIKLARRALVTDNMIKRVIQF 367

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKV 536
                        +  W   +   VS  +       +  +              R   KV
Sbjct: 368 ARQGYTDIAFDTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGPWNLIGRTNGKV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N     +  G + +SN C+E        +
Sbjct: 428 TKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S NLL  +  +  +FD D      R    VL+  + +     +   + ++  R
Sbjct: 484 DTACNLASANLLTFYDTHTRRFDADAYEHLCRLWTIVLEISVMMAQFPSKAIAELSYEFR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L  + +PY S E   +       ++  A + S E+A E G +  +K +
Sbjct: 544 TLGLGYANIGGLLMTMGLPYDSKEGRALCGALSAIMTGTAYATSAEMAAELGTFPGYKKN 603

Query: 715 ------------LWDQGVF------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L      +  +   ++  WD   +  K  
Sbjct: 604 ASHMLRVIRNHRRAAHGEAAGYEALAVNPVPLDHASCPQADIVDHAKAVWDRALELGKAN 663

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  I+P +  + + K    G + ++N  +   L+   
Sbjct: 664 GFRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPEALRALG 723

Query: 815 LWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA---TAFEID 852
             +  +     Y    GS+ N   I            + L K+     TAF+I 
Sbjct: 724 YRESEIAEIEAYAVGHGSLSNAPGINASSLKTKGFTDEALAKVEKALPTAFDIK 777



 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++ ++     V+N    + L         + +   +  G  ++     + D+   +   
Sbjct: 789 FIRDSLHIAPEVMNVPGFDLLAALGFSKRDIEAANVHICGAMTVEGAPHLKDEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ +       Y  +W + LK
Sbjct: 849 ANPCGKVGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVDDCKSAYLLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|330318802|gb|AEC11061.1| ribonucleotide reductase large subunit a [Camellia sinensis]
          Length = 160

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           +SG+F VVN  L+++L +  LW  A+ + + Y DGS+  I  IPD+LK I+ T +EI   
Sbjct: 1   LSGEFVVVNKHLLHDLTEMGLWSPALKNQIIYEDGSVQKIPEIPDELKVIYKTVWEIKQK 60

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913
            L++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  GLKT  YYLRSR+A    K
Sbjct: 61  TLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRSRAAADAIK 120

Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
            T+      LN  P  + + ++    +  S T+  EC  C
Sbjct: 121 FTVDTS--ILNEKPKIEDDENSKMSQMVCSLTNREECMAC 158


>gi|190891445|ref|YP_001977987.1| ribonucleotide-diphosphate reductase [Rhizobium etli CIAT 652]
 gi|190696724|gb|ACE90809.1| putative ribonucleotide-diphosphate reductase protein [Rhizobium
           etli CIAT 652]
          Length = 1270

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/577 (20%), Positives = 211/577 (36%), Gaps = 94/577 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 474 -------------------------------------RRTHDMNTANWIPDLFMKRVTQ- 495
                                                +R       + +P+ +++RV Q 
Sbjct: 308 VTGSKIVAKHLKAIMKACFNCEGDNGDCFDPAKNPALKREIRAAKKDQVPENYVQRVIQF 367

Query: 496 -------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENY--ERQADRGEIKV 536
                        +  W   +   VS    +       +F  A EN    +   R + +V
Sbjct: 368 ARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWKLTARKDGRV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW  +    + +  P I F    N        G +  SN C+E        +
Sbjct: 428 MKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +R
Sbjct: 484 DTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEYR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  +
Sbjct: 544 TLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAPN 603

Query: 715 LWDQGVFP------------------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                                     ID + L+     +  +   ++  WD+     +  
Sbjct: 604 RESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDKALALGEQH 663

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L+   
Sbjct: 664 GYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPDALRTLG 723

Query: 815 LWDEAMISDLKYH--DGSIGNIERI-PDDLKKIHATA 848
             +  +     Y    G++     I P  LK    TA
Sbjct: 724 YSESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGLTA 760



 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     + L       + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKETLKVSDEQLADMSFSLLDHMGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|302393703|sp|Q72S00|NRDJ_LEPIC RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
          Length = 1201

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/567 (20%), Positives = 197/567 (34%), Gaps = 99/567 (17%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
               S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +RG    
Sbjct: 185 VKSTSAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGENEP 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           + G  GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+E F+D +      
Sbjct: 245 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIENFIDWKVTEEKK 303

Query: 473 ----------RRRTHDMNTANW----------------------------IPDLFMKRVT 494
                       R  +   +                              IPD ++KRV 
Sbjct: 304 VASLVTGSMLNNRHLNAIMSACYEMEGEDRFNPKKNSSLKKTIQDAKKVLIPDNYIKRVI 363

Query: 495 Q--------------NAGWTLFSPDEVSDLHDL--------YGKEFEI-----AYENYER 527
                             W   + + VS  +          +    E       Y   E+
Sbjct: 364 DLARQGYKEILFEELTTDWQSDAYNTVSGQNSNNSIRLTNEFMAAVEQDQPWNLYFRTEK 423

Query: 528 QADRGEIKVFR---KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           +  + E +  +    + A  LW K+    + +  P   +    N        G +++SN 
Sbjct: 424 EKAKVEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGPINASNP 483

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E        +   CNL S NL          FD +      +    +L+  + +    
Sbjct: 484 CSEYMF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCKLWTIILEISVTMAQFP 539

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG     S L +L IPY S +A+ I       +   A + S E+A
Sbjct: 540 SKEIAELSYKFRTLGLGYANLGSVLMVLGIPYDSQQAMAITGAISSIMHMTAYATSAEMA 599

Query: 703 QERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRL 744
           +E+G +  +  +                     D  GL               M + ++ 
Sbjct: 600 KEQGPFVGYAKNQKHMLRVIRNHRRAAYNAPSGDYEGLTITPIGINPAFCPSYMLKAAQE 659

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
             D      +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 660 DADLALSLGEKYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 719

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG 829
           N  +   LK+       + + + Y  G
Sbjct: 720 NQSVPYGLKKLGYSPSEIEAIVNYCKG 746



 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 20/178 (11%)

Query: 788 NLYVKSNMSGDFTVVNSFLVNE---------LKQRDLWDEAMISDLKYHDGS--IGNIER 836
             + K N+  +F   N  +  E         L+      E +     Y  G+  I N   
Sbjct: 786 FAFNKFNLGENFLTKNLGISKEIFDSPGFSLLEHLGFTKEDINKANDYVCGTMTIENAPF 845

Query: 837 IPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           + +    +   A +        +     I   +  Q +I  A S  + L  E   + +  
Sbjct: 846 LKEKDYPVFDCANKCGKYGKRFLSYESHIRIMAAAQPFISGAISKTINLPEEAVIEDIKN 905

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            Y  +W M +K     R  S  S   +++  +   +      +   +T S        
Sbjct: 906 AYFLSWKMMIKANALYRDGSKLSQPLNSVLELLNGIEIDDQEEIREATISKDPVQIAE 963


>gi|15889037|ref|NP_354718.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium
           tumefaciens str. C58]
 gi|81591416|sp|Q8UEM4|NRDJ_AGRT5 RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|15156830|gb|AAK87503.1| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium
           tumefaciens str. C58]
          Length = 1272

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 212/594 (35%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D + N        
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVNEEQKVAAL 307

Query: 474 -------------------------------------RRTHDMNTANWIPDLFMKRVTQ- 495
                                                +R       + +P+ ++KRV Q 
Sbjct: 308 VTGSKIVAKHLKAIMKACVNCEADNGDCFDPAKNPALKREIRAAKKDMVPENYVKRVIQF 367

Query: 496 -------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYEN--YERQADRGEIKV 536
                        +  W   +   VS  +         +F  A EN        R + KV
Sbjct: 368 AEQGYKDIQFKTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVENDGNWNLTARKDGKV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N        G + +SN C+E        +
Sbjct: 428 MKTLKARDLWEKISHAAWASADPGLHFNTTMNDWHTSPAEGPIRASNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S+NLL        + D       +R    VL+  + +      +  + ++ +R
Sbjct: 484 DTACNLASLNLLQFKDAKTKRIDIADYEHAVRLWTVVLEVSVMMAQFPSRQIAERSYEYR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--- 711
            +GLG       L    IPY S E   IA      ++  + + S E+A E G + SF   
Sbjct: 544 TLGLGYANIGGLLMSSGIPYDSDEGRAIAGALTAIMTGVSYATSAEMAGELGPFPSFAPN 603

Query: 712 ---------KGSLWDQGVFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+     +  +   +   WD+  +  +  
Sbjct: 604 RDNMLRVIRNHRRAAHGQSEGYEGLSVNPVALIHADCTDQDLVAHATAAWDKALELGEKH 663

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+   
Sbjct: 664 GYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPESLRSLG 723

Query: 815 LWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HATAFEID 852
             +  +     Y    G++     I P  LK                 +AF+I 
Sbjct: 724 YSESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGFTDEKIEAVNAALKSAFDIK 777



 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      ++    N L       + + +   +  G  ++     + ++   +   
Sbjct: 789 FLKGTLKVSDEQLSDMSFNLLDHLGFAKKDIEAANVHVCGAMTLEGAPFLKNEHLAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCGAAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|45657460|ref|YP_001546.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600699|gb|AAS70183.1| ribonucleotide reductase protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 1209

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/567 (20%), Positives = 197/567 (34%), Gaps = 99/567 (17%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
               S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +RG    
Sbjct: 193 VKSTSAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGENEP 252

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           + G  GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+E F+D +      
Sbjct: 253 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIENFIDWKVTEEKK 311

Query: 473 ----------RRRTHDMNTANW----------------------------IPDLFMKRVT 494
                       R  +   +                              IPD ++KRV 
Sbjct: 312 VASLVTGSMLNNRHLNAIMSACYEMEGEDRFNPKKNSSLKKTIQDAKKVLIPDNYIKRVI 371

Query: 495 Q--------------NAGWTLFSPDEVSDLHDL--------YGKEFEI-----AYENYER 527
                             W   + + VS  +          +    E       Y   E+
Sbjct: 372 DLARQGYKEILFEELTTDWQSDAYNTVSGQNSNNSIRLTNEFMAAVEQDQPWNLYFRTEK 431

Query: 528 QADRGEIKVFR---KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           +  + E +  +    + A  LW K+    + +  P   +    N        G +++SN 
Sbjct: 432 EKAKVEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGPINASNP 491

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E        +   CNL S NL          FD +      +    +L+  + +    
Sbjct: 492 CSEYMF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCKLWTIILEISVTMAQFP 547

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG     S L +L IPY S +A+ I       +   A + S E+A
Sbjct: 548 SKEIAELSYKFRTLGLGYANLGSVLMVLGIPYDSQQAMAITGAISSIMHMTAYATSAEMA 607

Query: 703 QERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRL 744
           +E+G +  +  +                     D  GL               M + ++ 
Sbjct: 608 KEQGPFVGYAKNQKHMLRVIRNHRRAAYNAPSGDYEGLTITPIGINPAFCPSYMLKAAQE 667

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
             D      +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 668 DADLALSLGEKYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 727

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG 829
           N  +   LK+       + + + Y  G
Sbjct: 728 NQSVPYGLKKLGYSPSEIEAIVNYCKG 754



 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 20/178 (11%)

Query: 788 NLYVKSNMSGDFTVVNSFLVNE---------LKQRDLWDEAMISDLKYHDGS--IGNIER 836
             + K N+  +F   N  +  E         L+      E +     Y  G+  I N   
Sbjct: 794 FAFNKFNLGENFLTKNLGISKEIFDSPGFSLLEHLGFTKEDINKANDYVCGTMTIENAPF 853

Query: 837 IPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           + +    +   A +        +     I   +  Q +I  A S  + L  E   + +  
Sbjct: 854 LKEKDYPVFDCANKCGKYGKRFLSYESHIRIMAAAQPFISGAISKTINLPEEAVIEDIKN 913

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            Y  +W M +K     R  S  S   +++  +   +      +   +T S        
Sbjct: 914 AYFLSWKMMIKANALYRDGSKLSQPLNSVLELLNGIEIDDQEEIREATISKDPVQIAE 971


>gi|218463594|ref|ZP_03503685.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Kim 5]
          Length = 1170

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/595 (20%), Positives = 213/595 (35%), Gaps = 108/595 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 175 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 233

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +          
Sbjct: 234 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 293

Query: 474 --------------------------------------RRTHDMNTANWIPDLFMKRVTQ 495
                                                 +R       + +P+ +++RV Q
Sbjct: 294 VTGSKIVARHLKAIMKACVNCDGGDNGDCFDPAKNPALKREIRAAKKDQVPENYVQRVIQ 353

Query: 496 --------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENYERQA--DRGEIK 535
                         +  W   +   VS    +       +F  A EN        R + +
Sbjct: 354 FARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWNLTARKDGR 413

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  +    + +  P I F    N        G +  SN C+E        
Sbjct: 414 VMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----L 469

Query: 596 ETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +   CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +
Sbjct: 470 DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEY 529

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  
Sbjct: 530 RTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAP 589

Query: 714 SLWDQGVFP------------------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +                          ID + L+     +  +   ++  WD+  +  + 
Sbjct: 590 NRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDKALELGEQ 649

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+  
Sbjct: 650 HGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTL 709

Query: 814 DLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HATAFEID 852
              +  +     Y    G++     I P  LK                 +AF+I 
Sbjct: 710 GYSESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGLTDEKVEAVNAALKSAFDIK 764



 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     + L       + + +   +  G  ++     +  +   +   
Sbjct: 776 FLKETLKVSDEQLADMSFSLLDHMGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 835

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 836 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLK 895

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 896 ANALYRDGSK 905


>gi|163759498|ref|ZP_02166583.1| ribonucleotide-diphosphate reductase alpha subunit [Hoeflea
           phototrophica DFL-43]
 gi|162283095|gb|EDQ33381.1| ribonucleotide-diphosphate reductase alpha subunit [Hoeflea
           phototrophica DFL-43]
          Length = 1263

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 138/728 (18%), Positives = 253/728 (34%), Gaps = 117/728 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+                ++ +       ++   V        + +
Sbjct: 47  FSQVAADILAQKYFRKA----------GVPARLKKVEENSVPSWLWRSVADEKALAELPE 96

Query: 276 FDLVYLANDLKYERDFA---FEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGL 328
            +      D +   D     + Y G +     YF     +R  M +  +M    RVA   
Sbjct: 97  DERYGSETDARQVFDRLAGTWTYWGWK---GGYFTSEEDARAFMDEQAYMLATQRVAPNS 153

Query: 329 ALKETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYG 382
                     A           ++       T   S   HPQ  +CF+ +V D   +  G
Sbjct: 154 PQWFNTGLHWAYGIDGPGQGHFYVDPFTGKLTKSKSSYEHPQPHACFIQSVEDDLVNDNG 213

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441
           I       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ +  A A+  G 
Sbjct: 214 IMDLWVREARLFKYGSGTGSNFSHLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGG 272

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNT------------------------------GD 471
             R+ A    ++  H D+E++++ +                                  +
Sbjct: 273 TTRRAAKMVVVDIDHPDIEDYINWKVKEEQKVAALVTGSKIVAAHLTAIMKACLNCEADN 332

Query: 472 DRRRTHDMNTA----------NWIPDLFMKRVTQ--------------NAGWTLFSPDEV 507
           D     + N A          N +P+ ++KRV Q              +  W   +   V
Sbjct: 333 DACFDPNQNPALKREIKAAKKNQVPENYVKRVIQFARQGYTDIEFKTYDTDWDSEAYLTV 392

Query: 508 S----DLHDLYGKEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
           S    +       +F  A E         R + KV + + A  LW ++    + +  P +
Sbjct: 393 SGQNSNNSVSIKDDFLRAVETDGDWNLTARKDGKVMKTLKARDLWEQIGHAAWASADPGL 452

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYD 619
            F    N        G + +SN C+E        +   CNL S+NLL        + +  
Sbjct: 453 HFNTTMNDWHTCPAAGPIRASNPCSEYMF----LDDTACNLASLNLLRFKDADTKRINIA 508

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                +R    VL+  + +      +  + ++ +R +GLG       L    IPY S E 
Sbjct: 509 DYEHAVRLWTLVLEVSVMMAQFPSRQIAELSYKYRTLGLGYANIGGLLMTTGIPYDSKEG 568

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSL------------WDQGVF------ 721
             I       ++  + + S E+A E GA+  +K +                G        
Sbjct: 569 RAICGALTAIMTGVSYATSAEIAGELGAFPGYKDNKTNMLRVIRNHRLAAHGEDSGYEGL 628

Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780
            ++ + L+ +   +  + + +   WD+  +     G RN+    IAPT TI  +    + 
Sbjct: 629 SVNPVALIHDECPDQDLIKHATAAWDKALELGTKNGFRNAQVSVIAPTGTIGLVMDCDTT 688

Query: 781 SIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
            I+P +  + + K    G F ++N+ +   L+     +  +     Y    G+I     +
Sbjct: 689 GIEPDFALVKFKKLAGGGYFKIINNAVPEALRTLGYSEAQLAEIEAYAVGHGNINQAPGV 748

Query: 838 -PDDLKKI 844
            P  LK  
Sbjct: 749 NPGSLKAK 756



 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + KS +      ++ F  + L       + + +   +  G  ++     +  +   +   
Sbjct: 789 FCKSVLGLTDEQMDDFAFDLLAAIGFSRKDIEAANIHVCGAMTLEGAPHLKTEHYPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E +       Y  +W + LK
Sbjct: 849 ANPCGKVGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNEATVDDCKSAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|75675763|ref|YP_318184.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           winogradskyi Nb-255]
 gi|74420633|gb|ABA04832.1| ribonucleoside-diphosphate reductase class II [Nitrobacter
           winogradskyi Nb-255]
          Length = 1265

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 121/608 (19%), Positives = 213/608 (35%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++
Sbjct: 175 YYVDFKTGKLTRSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E++
Sbjct: 235 FSRLRGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEQY 293

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           +D                                 + +GDD          RR   +   
Sbjct: 294 IDWKVKEEQKVAALVTGSRINQKHLKAVMRACVNCEGSGDDCFLPEKNPALRREIKLARR 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             +PD ++KRV Q              +  W   +   VS  +       +  +      
Sbjct: 354 AQVPDNYIKRVIQFARQGYKEIDFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVET 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   KV + + A  LW K+    + +  P + F    N     +  G + +S
Sbjct: 414 DGDWNLIGRTNRKVTKTLKARELWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NL+  +     QFD +    T+R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLITFYDTASKQFDVEAYEHTVRLWTVVLEISVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              +     ++  R +GLG       L  + + Y S E   +       ++  A   S E
Sbjct: 530 FPSKAIAALSYEFRTLGLGFANIGGLLMTMGLSYDSREGRALCGALSAIMTGIAYRTSAE 589

Query: 701 LAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTS 742
           +A E GA+   K +                G         ++ + L      +  +   +
Sbjct: 590 MAGELGAFPGHKKNAGHMLRVIRNHRRAAHGQAHGYEALAVNPVPLDHASCPQADLIAHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              WD+     +  G RN+    +APT TI  +    +  I+P +  + + K    G + 
Sbjct: 650 TRAWDDALALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA- 846
           ++N  +   L+     +  +     Y    G + N   I            + + K+   
Sbjct: 710 IINRAVPEALRALGYRESEIAEIEAYAVGHGLLSNAPGINVSTLKAKGFTDEAIAKVEKA 769

Query: 847 --TAFEID 852
             TAF+I 
Sbjct: 770 LPTAFDIK 777



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 11/167 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + S   + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FIRDTLGVDADALASPAFDLLAAIGFSRREIEAANVHICGAMTVEGAPHLRAEHYPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ +       Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVDDCKSAYLLSWKLALK 908

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                R  S  S   ++   VD   +   +        +        
Sbjct: 909 ANALYRDGSKLSQPLNSQLIVDDDSDDDAIEALMDKPMAARTAQVAE 955


>gi|88813364|ref|ZP_01128602.1| hypothetical protein NB231_01833 [Nitrococcus mobilis Nb-231]
 gi|88789422|gb|EAR20551.1| hypothetical protein NB231_01833 [Nitrococcus mobilis Nb-231]
          Length = 1540

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 147/361 (40%), Gaps = 36/361 (9%)

Query: 569  IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623
              + Q     V  + L T         E   C LGS+NL             FD+++   
Sbjct: 1128 YDTTQSDKNTVIFNGLVTGQCGEQPLPEFGACLLGSVNLTKFVREPFTERAWFDWEEYRR 1187

Query: 624  TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683
             +    R+LDNV++IN   +E+ ++     R  G+G +G  SAL +L + Y +P+++   
Sbjct: 1188 VVAIFTRMLDNVVEINGLPLERQREEILRKRRHGMGFLGLGSALTMLRMQYGAPDSLAFT 1247

Query: 684  DESMEFISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDEL 736
            + + + ++     A +ELA+E+G               L  +     D   +  +V+  +
Sbjct: 1248 ERAAKEMALAGWRAGLELAEEKGPAPIMDEEFTLTEALLAKRPEMRKDGYRVGQKVKGRV 1307

Query: 737  AMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQN 788
               R SR          EL +R+   G R ++  +IAPT TI+       S  I+PS+ +
Sbjct: 1308 LWARYSRYMQRIAEADPELVERLAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAH 1367

Query: 789  LYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD---DLKKI 844
             Y ++   +G             ++ D++   +++    H      +  +     +L   
Sbjct: 1368 HYFRNVIRAGR---------KSKEKIDVYSFELLA--YRHFVDPQALPSMDPQTRNLPDY 1416

Query: 845  HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
              TA +I P   ++  +  QKWID + S    +  +   +    IYR A+  GLK     
Sbjct: 1417 FITADDITPQQHVDIQAAAQKWIDSSISKTANVPTDYPYEDFKGIYRYAYQQGLKGCTTF 1476

Query: 904  R 904
            R
Sbjct: 1477 R 1477



 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 14/208 (6%)

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           EN ++  ++ G+G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA 
Sbjct: 573 ENGLMVIHNCGIGYEFSTLRPKGAYVCGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQ 632

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            A  +  H DV +F+  ++    +  R    N +  I D FMK V +   W L  P    
Sbjct: 633 MATFDVGHPDVLDFIRAKR----EAGRLRQFNLSLLITDEFMKAVERGTDWPLAFPLSAQ 688

Query: 509 ----------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
                     D   +  +E+        R+      ++FR+I A  +W  ++T  ++   
Sbjct: 689 EASVDGIDLDDPEQVVWREWPSPQTYVTRKDGLVACRIFRRIKAQRIWDMIMTATYDYAE 748

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           P     D  N  +       + ++N C 
Sbjct: 749 PGFILIDRVNELNNNWFCEEIRATNPCV 776


>gi|294828088|ref|NP_712541.2| ribonucleotide reductase subunit alpha [Leptospira interrogans
           serovar Lai str. 56601]
 gi|302393704|sp|Q8F3P1|NRDJ_LEPIN RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|293385936|gb|AAN49559.2| ribonucleotide reductase subunit alpha [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 1201

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 114/567 (20%), Positives = 197/567 (34%), Gaps = 99/567 (17%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
               S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +RG    
Sbjct: 185 VKSTSAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGENEP 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           + G  GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+E F+D +      
Sbjct: 245 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDVDHPDIENFIDWKVTEEKK 303

Query: 473 ----------RRRTHDMNTANW----------------------------IPDLFMKRVT 494
                       R  +   +                              IPD ++KRV 
Sbjct: 304 VASLVTGSMLNNRHLNAIMSACYEMEGEDRFNPKKNSSLKKTIQDAKKVLIPDNYIKRVI 363

Query: 495 Q--------------NAGWTLFSPDEVSDLHDL--------YGKEFEI-----AYENYER 527
                             W   + + VS  +          +    E       Y   E+
Sbjct: 364 DLARQGYKEILFEELTTDWQSDAYNTVSGQNSNNSIRLTNEFMAAVEQDQPWNLYFRTEK 423

Query: 528 QADRGEIKVFR---KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           +  + E +  +    + A  LW K+    + +  P   +    N        G +++SN 
Sbjct: 424 EKAKVEGRKAKPSQTLRARELWEKISYAAWASADPGTQYHTTINEWHTCPEDGPINASNP 483

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642
           C+E        +   CNL S NL          FD +      +    +L+  + +    
Sbjct: 484 CSEYMF----LDNTACNLASANLQKFVNLETLNFDVEGFRYLCKLWTIILEISVTMAQFP 539

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
            ++  + ++  R +GLG     S L +L IPY S +A+ I       +   A + S E+A
Sbjct: 540 SKEIAELSYKFRTLGLGYANLGSVLMVLGIPYDSQQAMAITGAISSIMHMTAYATSAEMA 599

Query: 703 QERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRL 744
           +E+G +  +  +                     D  GL               M + ++ 
Sbjct: 600 KEQGPFVGYAKNQKHMLRVIRNHRRAAYNAPSGDYEGLTITPIGINPAFCPSYMLKAAQE 659

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
             D      +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++
Sbjct: 660 DADLALSLGEKYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFTLVKFKKLAGGGYFKII 719

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDG 829
           N  +   LK+       + + + Y  G
Sbjct: 720 NQSVPYGLKKLGYSPSEIEAIVNYCKG 746



 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 20/178 (11%)

Query: 788 NLYVKSNMSGDFTVVNSFLVNE---------LKQRDLWDEAMISDLKYHDGS--IGNIER 836
             + K N+  +F   N  +  E         L+      E +     Y  G+  I N   
Sbjct: 786 FAFNKFNLGENFLTKNLGISKEIFDSPGFSLLEHLGFTKEDINKANDYVCGTMTIENAPF 845

Query: 837 IPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887
           + +    +   A +        +     I   +  Q +I  A S  + L  E   + +  
Sbjct: 846 LKEKDYPVFDCANKCGKYGKRFLSYESHIRIMAAAQPFISGAISKTINLPEEAVIEDIKN 905

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            Y  +W M +K     R  S  S   +++  +   +      +   +T S        
Sbjct: 906 AYFLSWKMMIKANALYRDGSKLSQPLNSVLELLNGIEIDDQEEIREATISKDPVQIAE 963


>gi|148255613|ref|YP_001240198.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium
           sp. BTAi1]
 gi|146407786|gb|ABQ36292.1| ribonucleoside-diphosphate reductase class II [Bradyrhizobium sp.
           BTAi1]
          Length = 1258

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 134/700 (19%), Positives = 238/700 (34%), Gaps = 133/700 (19%)

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYD----RYFLHINGSRIEMPQAFFMRVAMGLALKE 332
           D   LA   + ER +  E    Q+         +    G+     +     VA    L+ 
Sbjct: 91  DTDALAALPETER-YGSERSAKQVFDRLAGCWTYWGWKGNYFSSEEDA---VAFYDELRF 146

Query: 333 TEKEKRAV----EFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLT 374
              ++       +++N    + +    P   +              S   HPQ  +CF+ 
Sbjct: 147 MLAKQMVAPNSPQWFNTGLHWAYGIDGPGQGHYYVDYKTGKLTKSKSSYEHPQPHACFIQ 206

Query: 375 TVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            V D   +  GI       A L KY  G G++++ +RG G  + G  G+S G++ FLK+ 
Sbjct: 207 GVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG-GGRSSGLMSFLKIG 265

Query: 432 NDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL------------------------- 465
           +  A A+  G   R+ A    ++  H D+E ++D                          
Sbjct: 266 DRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKEEQKVAALVTGSKINQKHLKAV 325

Query: 466 ------RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------N 496
                  + +GDD          RR   +     +PD ++KRV Q              +
Sbjct: 326 MKACVNCEGSGDDCFDPEKNPALRREIKLARRALVPDNYIKRVIQFAKQGYKDIDFPIYD 385

Query: 497 AGWTLFSPDEVSDLHDLYG----KEFEIAYENYERQADRGE--IKVFRKISAVALWRKML 550
             W   +   VS  +         +F  A E     +  G    KV + + A  LW K+ 
Sbjct: 386 TDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWSLIGRTNKKVVKTLKARDLWEKIG 445

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
              + +  P + F    N     +  G + +SN C+E        +   CNL S NLL  
Sbjct: 446 HAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF----LDDTACNLASANLLTF 501

Query: 611 F--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
           +      FD        R    VL+  + +     +   + ++  R +GLG       L 
Sbjct: 502 YNTETKHFDVGAYEHLCRLWTVVLEISVLMAQFPSKAIAELSYEFRTLGLGYANIGGLLM 561

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI-- 726
            + + Y S E   +       ++  A   S E+A E G +  +K +         +    
Sbjct: 562 TMGLSYDSKEGRALCGALSAIMTGIAYKTSAEMAGELGPFPGYKKNAAHMLRVIRNHRRA 621

Query: 727 ----------------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
                            L      ++++   +   WD+     +  G RN+    +APT 
Sbjct: 622 AKGEATGYEALSVNPVPLDHAHCPQVSLVSHAIQAWDDALALGEVNGYRNAQVTVVAPTG 681

Query: 771 TIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH- 827
           TI  +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y  
Sbjct: 682 TIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPAALRVLGYRESEIAEIEAYAV 741

Query: 828 -DGSIGNIERI-----------PDDLKKIHA---TAFEID 852
             GS+ N   +            + + K+     TAF+I 
Sbjct: 742 GHGSLSNAPGVNATTLKAKGFTDEAIAKVEKALPTAFDIK 781



 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 22/142 (15%)

Query: 788 NLYVKSNMSGDFTVV----------NSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIE 835
            ++ K  +  DF V                  L         + +   +  G  ++    
Sbjct: 782 FVFNKWTLGEDFIVKQLGVSADAIAAPNF-ELLSAIGFTKREIEAANVHICGAMTVEGAP 840

Query: 836 RIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886
            +  +   +   A          +     I   +  Q +I  A S  + + ++ + +   
Sbjct: 841 HLKAEHYAVFDCANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCK 900

Query: 887 FIYRQAWLMGLKTTYYLRSRSA 908
             Y  +W + LK     R  S 
Sbjct: 901 AAYLLSWKLALKANALYRDGSK 922


>gi|209549016|ref|YP_002280933.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534772|gb|ACI54707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1271

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 121/595 (20%), Positives = 215/595 (36%), Gaps = 108/595 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 474 --------------------------------------RRTHDMNTANWIPDLFMKRVTQ 495
                                                 +R       + +P+ +++RV Q
Sbjct: 308 VTGSKIVARHLKAIMKACVNCDGGDNGDCFDPTKNPALKREIRAAKKDQVPENYVQRVIQ 367

Query: 496 --------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENY--ERQADRGEIK 535
                         +  W   +   VS    +       +F  A EN    +   R + +
Sbjct: 368 FARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWKLTARKDGR 427

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  +    + +  P I F    N        G +  SN C+E        
Sbjct: 428 VMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----L 483

Query: 596 ETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +   CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +
Sbjct: 484 DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEY 543

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  
Sbjct: 544 RTLGLGYANIGGLLMSSGIPYDSTEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAP 603

Query: 714 SLWDQGVFP------------------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +                          ID + L+     +  +   ++  WD+  +  + 
Sbjct: 604 NRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDKALELGER 663

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L+  
Sbjct: 664 HGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPDALRTL 723

Query: 814 DLWDEAMISDLKYH--DGSIGNIERI-PDDLK-------------KIHATAFEID 852
              +  +     Y    G++     I P  LK                 +AF+I 
Sbjct: 724 GYSESQIAEIEAYAVGHGNLNQAPAINPSTLKTKGFTDEKVEAVNAALKSAFDIK 778



 Score = 95.7 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      ++    + L       + + +   +  G  ++     +  +   +   
Sbjct: 790 FLKETLKVSDEQLSDMSFSLLDHIGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 849

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W +GLK
Sbjct: 850 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKNAYLLSWKLGLK 909

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 910 ANALYRDGSK 919


>gi|209964247|ref|YP_002297162.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           centenum SW]
 gi|209957713|gb|ACI98349.1| B12-dependent ribonucleoside diphosphate reductase [Rhodospirillum
           centenum SW]
          Length = 1246

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 118/578 (20%), Positives = 202/578 (34%), Gaps = 92/578 (15%)

Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDW 404
              F         +   HPQ  +CF+ +V D   +  GI       A L KY  G G ++
Sbjct: 176 YVDFRTGELVKSETAYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNF 235

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463
           + +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++
Sbjct: 236 SRLRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVTVDLDHPDIEAYI 294

Query: 464 DLRKNTGDDR----------RRTHDMNTANW----------------------------- 484
           D +                 R+   M  A                               
Sbjct: 295 DWKVAEEQKVAALVTGSKTVRKHLTMVMAACTEGFGPDADRLDPQKNKALKRAIIAARKA 354

Query: 485 -IPDLFMKRVTQ--------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENY 525
            +P+ +++R  Q              +  W   +   VS    +        F  A E  
Sbjct: 355 LVPENYIQRAVQLAGQGYTDFDVRVFDTDWDSEAYLTVSGQNSNNSVRIPNAFLEAVETD 414

Query: 526 ERQ--ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
                  R + K  R + A ALW K+    +++  P + F    N        G +++SN
Sbjct: 415 ADWTLIRRTDGKPARTLKARALWDKIAYAAWQSADPGVQFDTTINEWHTCPASGRINASN 474

Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHT 642
            C+E        +   CNL SINL+     +  FD        R    VL+  + +    
Sbjct: 475 PCSEYMF----LDDTACNLASINLMEFRRTDGSFDIPAFEHACRLWTVVLEISVLMAQFP 530

Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702
             +  + ++ +R +GLG       L    IPY S E   I       ++  A + S E+A
Sbjct: 531 SREIARLSYEYRTLGLGFANIGGLLMASGIPYDSTEGRAICGAITAIMTGIAYATSAEMA 590

Query: 703 QERGAYSSFKGSLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRL 744
           QE G +  +  +         +                     L A+   + A+   ++ 
Sbjct: 591 QELGPFPGYAQNREAMLRVIRNHRRAAHGARSGYEDLSVLPVALRADDCPDAALMDAAKA 650

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802
            WD+     +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++
Sbjct: 651 AWDKALALGEAHGFRNAQATVLAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKII 710

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIP 838
           N  +   L +     E +  I       G++     I 
Sbjct: 711 NRAVPEALSRLGYTPEEITRIERYAVGHGTLQGAPGID 748



 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 11/110 (10%)

Query: 810 LKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA--------FEIDPMWLIES 859
           L         + +   Y  G  ++     + D+   +   A          +     I  
Sbjct: 808 LAFLGFGKAEIEAANVYCCGAMTLEGAPGLKDEHLPVFDCASPCGKVGRRYLSAQSHIRM 867

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            +  Q +I  A S  + +      ++    Y  +W +GLK     R  S 
Sbjct: 868 MAAAQPFISGAISKTINMPNHAGVEECKDAYLLSWRLGLKANALYRDGSK 917


>gi|114320627|ref|YP_742310.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227021|gb|ABI56820.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1095

 Score =  194 bits (492), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 136/344 (39%), Gaps = 38/344 (11%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDIN 639
            C E  L         C LGS+NL     +       FD+ + A  +    R+LDNV++IN
Sbjct: 703  CGEQPLPPY----GACLLGSVNLTKFVRDPFTEKARFDWQEYAEVVSVFTRMLDNVVEIN 758

Query: 640  CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               +++ ++     R  G+G +G  S L +L + Y   E++   ++    ++       V
Sbjct: 759  GLPLDEQRREIERKRRHGMGFLGLGSTLTMLRMKYGEAESLAFTEKVSREMALAGWRTGV 818

Query: 700  ELAQERGAYSSFKGSL-------WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD----- 747
            ELA+E+G       +          +    +D   +  +V+  + + R S          
Sbjct: 819  ELAEEKGPAPIMDETYTVDEAMLAKRPEMAVDGYKVGDKVKGRVLLARYSHYMQRVAEVD 878

Query: 748  -ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSG---DFTV 801
             EL + +   G R S+  +IAPT TI+       S  I+PS+ + Y ++ +         
Sbjct: 879  AELVEAIAEKGARFSHHTSIAPTGTISLSLANNASNGIEPSFAHHYFRNVIREGRKSKEK 938

Query: 802  VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
            V+ F    L  R   D            ++ + +    +L     TA  + P   ++  +
Sbjct: 939  VDVFSFELLAYRHFIDPE----------AVPSTDPETRNLPDYFITADSVTPKQHVDIQA 988

Query: 862  RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
              QKW+D + S    +  +   +    IYR A+  GLK     R
Sbjct: 989  AAQKWVDSSISKTANVPTDYPYEDFKDIYRYAYQQGLKGCTTFR 1032



 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 117/317 (36%), Gaps = 25/317 (7%)

Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETE---KEKRAVEFYN 344
           D   +     I   +Y L     ++  E     + RVA  LA  E     +E     F  
Sbjct: 16  DIPLQSASADIWDKKYRLKSKDGQVIDETVDHTWQRVARALAEVEKTKKLREHWYERFLW 75

Query: 345 LLSSFHFMCSTPTLFNSG----TRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGG 399
            L       +     N+G           +C ++ T+ D +  I   + E  +  K   G
Sbjct: 76  ALRRGAI-PAGRITSNAGAWAHKPATSTINCTVSGTIQDSMDDILQKVHEAGLTLKAGCG 134

Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459
           +G +++ +R  GA++ G    + G + F+ + +     V+  G R+GA  A  +  H DV
Sbjct: 135 IGYEFSTLRPRGAYVSGAGAYTSGSLSFMDIYDRMCFTVSSAGGRRGAQMATFDVGHPDV 194

Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----------D 509
            +F+  ++    +  R    N +  I + FM+ V  +A W L  P              D
Sbjct: 195 LDFIRAKR----EDGRLRQFNLSLLITEEFMQAVEDDAQWPLAFPLTKHEAETDNIDLTD 250

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
              +  +E+         +      +++R + A  LW  ++T  ++   P     D  N 
Sbjct: 251 SEQVIWREWPTTEPYISDEQGLVACRIYRTVKARRLWDMIMTSTYDFAEPGFILIDRVNE 310

Query: 570 RSPQQHVGVVHSSNLCT 586
            +       + ++N C 
Sbjct: 311 MNNNWFCEDIRATNPCV 327


>gi|327193111|gb|EGE60021.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CNPAF512]
          Length = 1291

 Score =  194 bits (492), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 121/595 (20%), Positives = 214/595 (35%), Gaps = 108/595 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 209 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 267

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +          
Sbjct: 268 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 327

Query: 474 --------------------------------------RRTHDMNTANWIPDLFMKRVTQ 495
                                                 +R       + +P+ +++RV Q
Sbjct: 328 VTGSKIVARHLKTIMKACFNCEGGDNGDCFDPAKNPALKREIRAAKKDQVPENYVQRVIQ 387

Query: 496 --------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENY--ERQADRGEIK 535
                         +  W   +   VS    +       +F  A EN    +   R + +
Sbjct: 388 FARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWKLTARKDGR 447

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  +    + +  P I F    N        G +  SN C+E        
Sbjct: 448 VMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----L 503

Query: 596 ETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +   CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +
Sbjct: 504 DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEY 563

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  
Sbjct: 564 RTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAP 623

Query: 714 SLWDQGVFP------------------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +                          ID + L+     +  +   ++  WD+     + 
Sbjct: 624 NRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDKALALGEQ 683

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L+  
Sbjct: 684 HGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPDALRTL 743

Query: 814 DLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HATAFEID 852
              +  +     Y    G++     I P  LK                 +AF+I 
Sbjct: 744 GYSESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGLTDEKVEAVNAALKSAFDIK 798



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     N L       + + +   +  G  ++     +  +   +   
Sbjct: 810 FLKETLKVSDEQLADMSFNLLDHMGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 869

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 870 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLK 929

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 930 ANALYRDGSK 939


>gi|304391737|ref|ZP_07373679.1| vitamin B12-dependent ribonucleotide reductase [Ahrensia sp.
           R2A130]
 gi|303295966|gb|EFL90324.1| vitamin B12-dependent ribonucleotide reductase [Ahrensia sp.
           R2A130]
          Length = 1248

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/723 (16%), Positives = 240/723 (33%), Gaps = 137/723 (18%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y++V A  + +K  R+                ++ +       ++   V+ +   + + +
Sbjct: 47  YSQVAADIIAQKYFRKA----------GVPAALKKVEENSVPSFLWRSVEDKDAMKKLPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKE 332
            +        +   +  F  L         +    G      E  QA++  +   LA ++
Sbjct: 97  EERYG----PEMTAEQVFSRLA----GTWTYWGWKGGYFTTEEDAQAYYDELCFMLATQK 148

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSG--------------TRHPQLSSCFLTTVPD 378
                 + +++N    + +    P   +                  HPQ  +CF+  V D
Sbjct: 149 VAPN--SPQWFNTGLHWAYGIDGPAQGHHYVDFETGKLTKSKTSYEHPQPHACFIQGVGD 206

Query: 379 ---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
              +  GI       A L KY  G G++++ +RG    + G  GKS G++ FLK+ +  A
Sbjct: 207 DLVNEGGIMDLWVREARLFKYGSGTGSNFSYIRGENEPLSG-GGKSSGLMSFLKIGDRAA 265

Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL----FM 490
            A+  G   R+ A    ++  H D+E ++D       + ++   + T + +        M
Sbjct: 266 GAIKSGGTTRRAAKMVVVDIDHPDIEAYID---WKVKEEQKVAAIVTGSKVVSKHMTAIM 322

Query: 491 KRVTQ-----------------NAGWTLFSPDEVSDLH-----------------DLYGK 516
           K                              + V + +                  +Y  
Sbjct: 323 KACINCEADGDQCFEPASNPVLKREIRAAKRNSVPENYIARVIMLAKQGFTDIEFPVYNT 382

Query: 517 EFE-IAYEN------------------------YERQADRGEIKVFRKISAVALWRKMLT 551
           +++  AY                                R +  V + + A  LW K+  
Sbjct: 383 DWDSDAYLTVSGQNSNNSVSIKDDFLRAVEADGTWDLIARRDGSVVKSVQARELWDKIGN 442

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
             +++  P + +    N        G + +SN C+E        +   CNL S+NLL   
Sbjct: 443 AAWQSADPGLHYNTTMNDWHTCPEAGPIRASNPCSEYMF----LDDTACNLASLNLLQFR 498

Query: 612 ANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
            +++ FD +      R  + VL+  + +     ++  + ++ +R  GLG       L   
Sbjct: 499 RDDKSFDVEAFEHATRLWMMVLEISVLMAQFPSKEIAQLSYDYRTTGLGFANIGGLLMTA 558

Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS-------------SFKGSLWD 717
            IPY S E   +       ++      S E+A+E+G +                  +   
Sbjct: 559 GIPYDSDEGRAVCGAITAIMTGICYETSAEMAKEQGPFPGYAPNAEHMARVMRNHRNAAH 618

Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRL---------PWDELKKRVKTIGMRNSNCMAIAP 768
                 D++ +     D  ++   +R           WD   +     G RN+    IAP
Sbjct: 619 GNAEGYDALAINPVPLDHASLEGRARWAGLSDHAKAAWDRAVELGNEHGYRNAQSTVIAP 678

Query: 769 TATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           T TI  +    +  I+P +  + + K    G F ++N  +   L      +  +   + Y
Sbjct: 679 TGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALGSLGYDEATIKRMITY 738

Query: 827 HDG 829
             G
Sbjct: 739 AVG 741



 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + K  +  +   +N F  + L       + + +   Y  G  ++     + D+   +   
Sbjct: 792 FCKETLGLNDEQLNDFSFDLLGAIGFSKDEVQAANIYCCGAMTLEGAPGLKDEHLAVFDC 851

Query: 848 A--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I+  +  Q +I  A S  + + ++ + +     Y  +W +GLK
Sbjct: 852 ATPCGRIGTRSLSTHSHIKMMAAAQPFISGAISKTINMPNDAAVEDCTEAYMMSWKLGLK 911

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 912 ANALYRDGSK 921


>gi|192291697|ref|YP_001992302.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris TIE-1]
 gi|192285446|gb|ACF01827.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris TIE-1]
          Length = 1257

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/608 (20%), Positives = 216/608 (35%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++
Sbjct: 175 YYVDYKTGKLTKSKSAYEHPQPHACFIQGIEDDLVNDGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 235 FSRLRGEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAY 293

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           +D                                 + +GDD          RR   +   
Sbjct: 294 IDWKVKEEQKVAALVTGSKVNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARR 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             + D  +KRV Q              +  W   +   V+  +       +  +      
Sbjct: 354 ALVTDAMIKRVIQFAKQGYKEIDFPIYDTDWDSEAYLTVAGQNSNNSVSLKDDFLRAVET 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   KV + + A  LW K+ T  + +  P + F    N     +  G + +S
Sbjct: 414 DGDWHLTARTNKKVVKTLKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NLLA +    N+FD D      R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLLAFYDVGANRFDLDAYEHLCRLWTVVLEVSVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              ++  + ++  R +GLG       L  + + Y S E   +       ++  A + S E
Sbjct: 530 FPSKQIAELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYATSAE 589

Query: 701 LAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTS 742
           +A + GA+  +K +                G         ++ + L             +
Sbjct: 590 MAAKLGAFPGYKKNADHMLRVIRNHRRAAHGESRVYEALSVNPVPLDHTNCPIPDAVAHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
           +  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F 
Sbjct: 650 KAAWDKALELGEQHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA- 846
           ++N  +   L+     +  +     Y    GS+ N   I            + L K+   
Sbjct: 710 IINRAVPAALRVLGYPEHQIQEIEAYAVGHGSLSNAPAINASTLKAKGFTDEALAKVEKA 769

Query: 847 --TAFEID 852
             TAF+I 
Sbjct: 770 LPTAFDIK 777



 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +  +   +     + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLKDVLKIEAEQIAQPNFDLLTALGFTKREIEAANIHICGAMTVEGAPHLKPEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|39936042|ref|NP_948318.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris CGA009]
 gi|39649896|emb|CAE28418.1| ribonucleotide reductase [Rhodopseudomonas palustris CGA009]
          Length = 1257

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/608 (20%), Positives = 216/608 (35%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++
Sbjct: 175 YYVDYKTGKLTKSKSAYEHPQPHACFIQGIEDDLVNDGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 235 FSRLRGEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAY 293

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           +D                                 + +GDD          RR   +   
Sbjct: 294 IDWKVKEEQKVAALVTGSKVNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARR 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             + D  +KRV Q              +  W   +   V+  +       +  +      
Sbjct: 354 ALVTDAMIKRVIQFAKQGYKEIDFPIYDTDWDSEAYLTVAGQNSNNSVSLKDDFLRAVET 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   KV + + A  LW K+ T  + +  P + F    N     +  G + +S
Sbjct: 414 DGDWHLTARTNKKVVKTLKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NLLA +    N+FD D      R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLLAFYDVGANRFDLDAYEHLCRLWTVVLEVSVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              ++  + ++  R +GLG       L  + + Y S E   +       ++  A + S E
Sbjct: 530 FPSKQIAELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYATSAE 589

Query: 701 LAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTS 742
           +A + GA+  +K +                G         ++ + L             +
Sbjct: 590 MAAKLGAFPGYKKNADHMLRVIRNHRRAAHGESRVYEALSVNPVPLDHTNCPIPDAVAHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
           +  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F 
Sbjct: 650 KAAWDKALELGEQHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA- 846
           ++N  +   L+     +  +     Y    GS+ N   I            + L K+   
Sbjct: 710 IINRAVPAALRVLGYPEHQIQEIEAYAVGHGSLSNAPAINASTLKAKGFTDEALAKVEKA 769

Query: 847 --TAFEID 852
             TAF+I 
Sbjct: 770 LPTAFDIK 777



 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +  +   +     + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLKDVLKIEAEQIAQPNFDLLTALGFTKREIEAANIHICGAMTVEGAPHLKPEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|86357383|ref|YP_469275.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CFN 42]
 gi|86281485|gb|ABC90548.1| ribonucleotide-diphosphate reductase protein [Rhizobium etli CFN
           42]
          Length = 1271

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/595 (20%), Positives = 212/595 (35%), Gaps = 108/595 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 474 --------------------------------------RRTHDMNTANWIPDLFMKRVTQ 495
                                                 +R       + +P+ +++RV Q
Sbjct: 308 VTGSKIVARHLKAIMKACVNCDGGDNGDCFDPAKNPALKREIRAAKKDQVPENYVQRVIQ 367

Query: 496 --------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENY--ERQADRGEIK 535
                         +  W   +   VS    +       +F  A EN    +   R + +
Sbjct: 368 FARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWKLTARKDGR 427

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  +    + +  P I F    N        G +  SN C+E        
Sbjct: 428 VMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----L 483

Query: 596 ETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +   CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +
Sbjct: 484 DDTACNLASLNLLQFKDKATKRINIGDYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEY 543

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  
Sbjct: 544 RTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAP 603

Query: 714 SLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +         +                     L+     +  +   ++  WD+  +  + 
Sbjct: 604 NRESMLRVIRNHRRAAYGETSGYEALSINPVALIHSENPDQDLAAHAKSAWDKALELGEQ 663

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+  
Sbjct: 664 HGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTL 723

Query: 814 DLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HATAFEID 852
              +  +     Y    G++     I P  LK                 +AF+I 
Sbjct: 724 GYSESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGFTDEKVEAVNAALKSAFDIK 778



 Score = 94.5 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     + L       + + +   +  G  ++     +  +   +   
Sbjct: 790 FLKDTLKVSDEQLTDMSFSLLDHMGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 849

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 850 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLK 909

Query: 899 TTYYLRSRSA-TSVEKSTLKGVDGKLNAVPV 928
                R  S  +    ++L   +   +A+  
Sbjct: 910 ANALYRDGSKLSQPLNASLIEDESDEDALED 940


>gi|170746750|ref|YP_001753010.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653272|gb|ACB22327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1243

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 131/746 (17%), Positives = 237/746 (31%), Gaps = 124/746 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V +  L +K  R+                ++ +       ++   V        + +
Sbjct: 47  WSQVASDVLAQKYFRKA----------GVPARLRKVEENAVPSFLWRSVPDDAALAELPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +     +      D              YF     +   M +  FM     VA      
Sbjct: 97  DERFVSESSATQVFDRLAGCWTYWGWKGGYFSSEEDASAFMDELRFMLARQMVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A          ++        T   S   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPSQGHYYCDPQTGVLTKSASAYEHPQPHACFIQSVQDDLVNDGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +R       G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSMLRSENEK-LGGGGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDL----------------------------RKNTGDDRRRT 476
           + A    ++  H D+E F+D                                   +    
Sbjct: 276 RAAKMVIVDIDHPDIEAFIDWKVKEEQKVAALVTGSKVVSKHLTLVMKACTQCEAEGDAC 335

Query: 477 HDMNTA------------NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDL 510
            D                  +PD ++KRV Q              +  W   +   V+  
Sbjct: 336 FDSERNPALKREIKAARRASVPDSYIKRVVQFARQGFTKIEFPVYDTDWDSEAYLTVAGQ 395

Query: 511 HDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +          +          +   R   KV + + A  LW ++    + +  P + F 
Sbjct: 396 NSNNSVSLTDDFLRAVEADADWQLTARTTGKVTKTLRARDLWERIGEAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLA 622
              N        G + +SN C+E        +   CNL S NLL  +     +FD +   
Sbjct: 456 TTMNDWHTCPAGGRIRASNPCSEYMF----LDDTACNLASANLLTMYDRETKRFDAEAFE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R    VL+  + +     ++  + ++ +R +GLG       L  + +PY S     +
Sbjct: 512 HLNRLWTVVLEISVMMAQFPSKEIAELSYRYRTLGLGYANIGGLLMTMGLPYDSDAGRAL 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG--------------- 727
           A      ++  A + S E+A E G + +++ +         +                  
Sbjct: 572 AGALTAIMTGVAYATSAEMASELGTFPAYEENADAMLRVIRNHRRAAHGEAEGYEFLNVA 631

Query: 728 ---LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
              L      +  +   +R  WD   K  +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVALDHANIPQADLGDHARAAWDRALKLGEEHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PD 839
           P +  + + K    G F ++N    + L+     +  +     Y    GS+G    I P 
Sbjct: 692 PDFALVKFKKLAGGGYFKIINQAAPDALRALGYRESEIAEIEAYAVGHGSMGQAPGINPT 751

Query: 840 DLKKI-------------HATAFEID 852
            L+                 +AF+I 
Sbjct: 752 TLRAKGFTDEKIAAVEKGLKSAFDIK 777



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 9/111 (8%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     +  +   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 831 TLEGAPGLKLEHYPVFDCANPCGRIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDA 890

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
           + +     Y  +W + LK     R  S  S   ++    D    A    + 
Sbjct: 891 TVEDCKAAYLLSWRLALKANALYRDGSKLSQPLNSALISDDDDEADEGIEA 941


>gi|227822105|ref|YP_002826076.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           fredii NGR234]
 gi|227341105|gb|ACP25323.1| ribonucleotide-diphosphate reductase alpha subunit [Sinorhizobium
           fredii NGR234]
          Length = 1263

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 135/746 (18%), Positives = 248/746 (33%), Gaps = 124/746 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+               +++ +       ++   V      +++  
Sbjct: 47  FSQVAADILAQKYFRKA----------GVPAKLKRVEENDVPSFLWRSVPDTEALKALPK 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +      D +   D              YF     +     +  +M    RVA      
Sbjct: 97  DEQYGSETDARQVFDRLAGTWAYWGWKGGYFETEEDASAFRDELAYMLATQRVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           ++       T   S   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPGQGHFYVDPFTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSHLRAEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTG------------------------------DDRR 474
           + A    ++  H D+EE+++ +                                  DD  
Sbjct: 276 RAAKMVVVDIDHPDIEEYINWKVKEEQKVAALVTGSKIVAKHLKAIMKACVNCDGSDDAC 335

Query: 475 RTHDMNTANW----------IPDLFMKRVTQ--------------NAGWTLFSPDEVS-- 508
                N A            +P+ ++KRV Q              +  W   +   VS  
Sbjct: 336 FDPKQNPALKREIRAAKQALVPENYVKRVIQFARQGYKDIQFKTYDTDWDSEAYLTVSGQ 395

Query: 509 --DLHDLYGKEFEIAYENYERQA--DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             +       +F  A E  +      R + +V + + A  LW  +    + +  P + F 
Sbjct: 396 NSNNSVSIKDDFLRAVEADDEWNLTARKDGRVMKTLKARDLWESISYAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLA 622
              N        G + +SN C+E        +   CNL S+NL+        + +     
Sbjct: 456 TTMNDWHTCPAAGPIRASNPCSEYMF----LDDTACNLASLNLMQFKDAATKRINIADYE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +R    VL+  + +      +  + ++ +R +GLG       L    IPY S E   I
Sbjct: 512 HAVRLWTVVLEVSVMMAQFPSREIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEGRAI 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSF------------KGSLWDQGVFP------ID 724
           A      ++  A + S E++ + G +  F                   G         ++
Sbjct: 572 AGALTAIMTGVAYATSAEISAKLGPFPGFAPNRENMLRVMRNHRRAAHGETTGYEGLSVN 631

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
            + L+     +  +   ++  WDE  +  +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVALIHADCPDQELIAHAKSAWDEAVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PD 839
           P +  + + K    G F ++N  +   L+     +  +     Y    G++     I P 
Sbjct: 692 PDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGNLNQAPAINPT 751

Query: 840 DLKKI-------------HATAFEID 852
            LK                 +AF+I 
Sbjct: 752 TLKAKGFTDEKVDAVNAALKSAFDIK 777



 Score = 93.0 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 795 MSGDFTVVNSFLV----NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA 848
           + G   V +  L     N L+      + + +   +  G  ++     +  +   +   A
Sbjct: 790 LKGTLKVSDEQLASMDFNLLEHLGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDCA 849

Query: 849 F--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                     +     I   +  Q +I  A S  + + +E + +     Y  +W + LK 
Sbjct: 850 NPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKA 909

Query: 900 TYYLRSRSA 908
               R  S 
Sbjct: 910 NALYRDGSK 918


>gi|323137682|ref|ZP_08072758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocystis sp. ATCC 49242]
 gi|322396979|gb|EFX99504.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocystis sp. ATCC 49242]
          Length = 1212

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/599 (19%), Positives = 200/599 (33%), Gaps = 98/599 (16%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGI 383
           GL             FY   ++            S   HPQ  +CF+ ++ D   +  GI
Sbjct: 160 GLHWAYGVDGPSQGHFYVDYANGKM-----VKSKSAYEHPQPHACFIQSIEDDLVNEGGI 214

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
                  A L KY  G G +++ +RG    + G    S G++ FLK+ +  A A+  G  
Sbjct: 215 MDLWVREARLFKYGSGTGTNFSRLRGEKEKLSGGG-SSSGLMSFLKIGDRAAGAIKSGGT 273

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGD------------------------------D 472
            R+ A    ++  H D+E F+D +    +                              D
Sbjct: 274 TRRAAKMVVVDVDHPDIEAFVDWKVKEEEKVASLVTGSKIVKKHLKAILRACVNCDGPGD 333

Query: 473 RRRTHDMNTANW----------IPDLFMKRVTQ--------------NAGWTLFSPDEVS 508
                + N A            +PD F+KRV Q              +  W   +   VS
Sbjct: 334 DCFNPEKNPALKREIKLARRNEVPDNFIKRVIQFARQGYKDISFETYDTDWDSEAYLTVS 393

Query: 509 DLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             +          + +            R + KV + + A  LW K+    + +  P I 
Sbjct: 394 GQNSNNSVRVTDEFLHAVENDGDWNLIKRLDGKVSKTLKARDLWEKIGYAAWASADPGIQ 453

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDYDK 620
           F    N        G + +SN C+E        +   CNL S+NLL        + D D 
Sbjct: 454 FHTTINDWHTCPAGGPIRASNPCSEYMF----LDDTACNLASLNLLQFRDDETKRIDVDS 509

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
               +R    VL+  + +     ++  + ++ +R +GLG       L    + Y S    
Sbjct: 510 YEHAVRLWTIVLEISVLMAQFPSKEIAQLSYDYRTLGLGYANVGGLLMSSGVAYDSAAGR 569

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--- 737
            I       ++    + S E+A+ERG ++ F  +         +         D      
Sbjct: 570 AITGALSAIMTGVCYATSAEMAKERGPFARFMENRESMLRVVRNHRRAAHGEHDGYESLA 629

Query: 738 ---------------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQS 781
                          +   +   WD+   + +  G RN+    +APT TI  +    +  
Sbjct: 630 VKPVPLDIASCPDPLLAERAAAAWDKALSQGELYGYRNAQVTVVAPTGTIGLVMDCDTTG 689

Query: 782 IDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI 837
           I+P +  + + K    G   +VN  +   L+     +  +     Y  G  S+ N   I
Sbjct: 690 IEPDFALVKFKKLAGGGYLKIVNRAVPEGLRALSYRESEIAEIEAYAVGHASLANAPAI 748



 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 795 MSGDFTVVNSFLVN----ELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA 848
           ++G   V    L +     L         + +   +  G  ++     +  +   +   A
Sbjct: 790 LTGTLKVPAHSLEDRNFDLLTHLGFAKSEIEAANTHVCGAMTLEGAPHLKREHYAVFDCA 849

Query: 849 F--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                     +     I   +  Q +I  A S  + + ++ S +  +  Y  +W +GLK 
Sbjct: 850 NPCGRTGKRYLSVESHIRMMAAAQPFITGAISKTINMPNDASIEDCEQAYLLSWRLGLKA 909

Query: 900 TYYLRSRSA 908
               R  S 
Sbjct: 910 NALYRDGSK 918


>gi|90423882|ref|YP_532252.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB18]
 gi|90105896|gb|ABD87933.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisB18]
          Length = 1262

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/594 (19%), Positives = 211/594 (35%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD---- 472
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKEEQKVAAL 307

Query: 473 ------RRRTHDMNTANWIP------------------------------DLFMKRVTQ- 495
                  ++         +                               D  +KRV Q 
Sbjct: 308 VTGSKLNQKHLKAVLKACVNCEGSGDDCFDPEKNPALRREIKLARRALVQDAMIKRVIQY 367

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKV 536
                        +  W   +   VS  +       +  +              R   KV
Sbjct: 368 AKQGYKEIDFPTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLIGRTNKKV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N     +  G + +SN C+E        +
Sbjct: 428 MKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S NLL  +    N+FD D      R    VL+  + +     ++  + ++  R
Sbjct: 484 DTACNLASANLLTMYDTTTNRFDVDAYEHLCRLWTVVLEVSVMMAQFPSKQIAELSYEFR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L  + + Y S E   +       ++  A S S E+AQ+ G +  +K +
Sbjct: 544 TLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYSTSAEMAQKLGPFPGYKKN 603

Query: 715 ------------LWDQGVFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L      +  +   ++  WD+  +  +  
Sbjct: 604 AGHMLRVIRNHRRAAHGESRGYEGLAVNPVPLDHASCPQEDVVTHAKAAWDKALELGEAH 663

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  I+P +  + + K    G + ++N  +   L+   
Sbjct: 664 GYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPAALRILG 723

Query: 815 LWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA---TAFEID 852
             +  +     Y    GS+ N   I            + LKK+ A   TAF+I 
Sbjct: 724 YPEHQIAEIEAYAVGHGSLSNAPAINVATLKAKGFTDEALKKVEAALPTAFDIK 777



 Score = 88.0 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 11/112 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L         + +   +  G  +I     +  +   +   A          +     I
Sbjct: 807 DLLAAIGFSKREIEAANIHICGAMTIEGAPHLKAEHYAVFDCANPCGKVGKRYLSVESHI 866

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              +  Q +I  A S  + + ++ +       Y  +W + LK     R  S 
Sbjct: 867 RMMAATQPFISGAISKTINMPNDATVDDCKSAYLLSWKLALKANALYRDGSK 918


>gi|316933806|ref|YP_004108788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris DX-1]
 gi|315601520|gb|ADU44055.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodopseudomonas palustris DX-1]
          Length = 1257

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 124/608 (20%), Positives = 213/608 (35%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++
Sbjct: 175 YYVDYKTGKLTKSKSAYEHPQPHACFIQGIEDDLVNDGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 235 FSRLRGEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAY 293

Query: 463 LDLRKNTGDD----------RRRTHDMNTANWIP-------------------------- 486
           +D +                 ++         +                           
Sbjct: 294 IDWKVKEEQKVAALVTGSKVNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARR 353

Query: 487 ----DLFMKRVTQ--------------NAGWTLFSPDEV----SDLHDLYGKEFEIAYEN 524
               D  +KRV Q              +  W   +   V    S+       +F  A E 
Sbjct: 354 ALVQDAMIKRVIQFAKQGYKEIDFPIYDTDWDSEAYLTVAGQNSNNSVSLRDDFLRAVET 413

Query: 525 Y--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   KV + + A  LW K+ T  + +  P + F    N     +  G + +S
Sbjct: 414 DGDWHLTARTNKKVVKTLKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NLLA +    N+FD D      R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLLAFYDVGANRFDLDAYEHLCRLWTVVLEISVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              ++  + ++  R +GLG       L  + + Y S E   +       ++  A + S E
Sbjct: 530 FPSKQIAELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGTAYATSAE 589

Query: 701 LAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTS 742
           +A + GA+  +K +                G         ++ + L             +
Sbjct: 590 MAAKLGAFPGYKKNADHMLRVIRNHRRAAHGETRVYEALSVNPVPLDHAGCPIPDAVAHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
           +  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F 
Sbjct: 650 KAAWDKALELGEQHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA- 846
           ++N  +   L+     +  +     Y    GS+ N   I            + L K+   
Sbjct: 710 IINRAVPAALRVLGYPEHQIQEIEAYAVGHGSLSNAPAINASTLKAKGFTDEALAKVEKA 769

Query: 847 --TAFEID 852
             TAF+I 
Sbjct: 770 LPTAFDIK 777



 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +  +   +     + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLKDVLKIEAEQIAQPNFDLLTALGFTKREIEAANIHICGAMTVEGAPHLKPEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|221102330|ref|XP_002161443.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 472

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 112/353 (31%), Positives = 180/353 (50%), Gaps = 36/353 (10%)

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           ++ E    +   ++ + +   L      + E+ P Y  +TA+ L E + +     +    
Sbjct: 153 IVQEHDIQI--DITNTFILNFLKEFIAEIKEEFPKYLLITAKLLQENIDKN--NDMSPIL 208

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
              T + +   +                            L N ++Y+RD+ F+Y G++ 
Sbjct: 209 SDETFNIISKYHR--------------------------RLQNSIRYDRDYLFDYFGIKT 242

Query: 301 LYDRYFLH---INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357
           L   Y           IE PQ   MRVA+G+     E     +E Y+L+S  +F  +TPT
Sbjct: 243 LERSYLYKLHFTKFKIIERPQHMIMRVAIGIHG---EDIDSVIETYDLISQKYFTHATPT 299

Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           LFN+GTR  Q+SSCFL  + D++  IF A+++ A  +K++GG+G   + +R  G+ I GT
Sbjct: 300 LFNAGTRRAQMSSCFLQAIDDNIESIFEAVRDIAFTSKWAGGIGVHMSALRCRGSLIRGT 359

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NG + GV+P   + N  A  +NQGG+R G++  YLE  H D+ +F DLRKNTG+D  R  
Sbjct: 360 NGIASGVVPLCILLNKLAKYINQGGRRNGSIACYLEPHHADIFDFCDLRKNTGNDDDRAR 419

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D+  A W+P LFMKRV  +  W+L  PD+   L+ ++ +E+   YE YE + +
Sbjct: 420 DLYLALWVPSLFMKRVRDDLTWSLMCPDQCPGLNKVHSEEYVKLYEMYESEGN 472


>gi|116251709|ref|YP_767547.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256357|emb|CAK07438.1| putative vitamin B12-dependent ribonucleotide reductase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1271

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/574 (20%), Positives = 207/574 (36%), Gaps = 93/574 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 474 --------------------------------------RRTHDMNTANWIPDLFMKRVTQ 495
                                                 +R       + +P+ +++RV Q
Sbjct: 308 VTGSKVVAKHLKAIMKACFNCEGGDNGDCYDPNKNPALKREIRAAKKDQVPENYVQRVIQ 367

Query: 496 --------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENYERQA--DRGEIK 535
                         +  W   +   VS    +       +F  A EN        R + +
Sbjct: 368 FARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWNLTARKDGR 427

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  +    + +  P I F    N        G +  SN C+E        
Sbjct: 428 VMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----L 483

Query: 596 ETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +   CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +
Sbjct: 484 DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEY 543

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  
Sbjct: 544 RTLGLGYANIGGLLMSSGIPYDSTEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAP 603

Query: 714 SLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +         +                     L+     +  +   ++  WD+  +  + 
Sbjct: 604 NRESMLKVIRNHRRAAHGESSGYEALSINPVALIHSENPDQDLVAHAKSAWDKALELGEQ 663

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L+  
Sbjct: 664 HGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPDALRTL 723

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
              +  +     Y  G  GN+ + P        T
Sbjct: 724 GYSESQIAEIEAYAVGH-GNLNQAPAVNPSTLKT 756



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 49/163 (30%), Gaps = 11/163 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     + L       + + +   +  G  ++     + ++   +   
Sbjct: 790 FLKETLKVSDEQLADMSFSLLDHIGFSKKDIEAANIHVCGAMTLEGAPFLKNEHLPVFDC 849

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 850 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLGLK 909

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
                R  S  S   ++    D            +   +  + 
Sbjct: 910 ANALYRDGSKLSQPLNSSLIEDEDDEDALEDLLQAPLAAQAVT 952


>gi|194333550|ref|YP_002015410.1| ribonucleotide-diphosphate reductase subunit alpha
           [Prosthecochloris aestuarii DSM 271]
 gi|194311368|gb|ACF45763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Prosthecochloris aestuarii DSM 271]
          Length = 1156

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 117/556 (21%), Positives = 203/556 (36%), Gaps = 91/556 (16%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
                    PQ  +CF+ +V D   +  GIF      A + K+  G G +++ +R  G  
Sbjct: 169 CESTDAYSRPQAHACFIQSVNDDLVNDGGIFDLAIREARVFKFGSGSGTNFSNLRSRGEK 228

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           + G  G S G++ FLK+ +  A A+  G   R+ A    ++  H D+EEF++ +     +
Sbjct: 229 LSG-GGTSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIEWKSR---E 284

Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL------------------- 513
             +   + + + +   F+K +   A            L+ L                   
Sbjct: 285 EDKVASLVSGSRVCSKFLKAIVDEAVSNGTDRMTNPKLNTLVVNALGRGVPMSYIVRVIS 344

Query: 514 ------YGKEFEIAYENYERQAD--------------------------------RGEIK 535
                    +F+    +YE +A                                 R   K
Sbjct: 345 LVEQGYTTLDFDEYTTHYESEAYQTVSGQNSNNTVRVTNEFMKAVENDDLWVLRERTTGK 404

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
             R + A  LW K++   ++   P + F    N        G ++ SN C+E        
Sbjct: 405 SARSVRARDLWEKIVMSAWKCADPGLQFDTTINEWHTCPASGRINGSNPCSEYMF----L 460

Query: 596 ETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +   CNL S+NL       + +   D L    R    VL+  + +     E   + ++  
Sbjct: 461 DDTACNLASLNLAHFLDVEKGEIKVDDLLHATRLWTIVLEISVLMAHFPSEDIARLSYEF 520

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG     + L ++ IPY SP+A+ IA      I+  A  AS E+A + G Y+ F+ 
Sbjct: 521 RTLGLGFANLGTILMVMGIPYDSPKALAIAGAISALITGGAYRASAEMAADLGPYARFRE 580

Query: 714 S------------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKT 755
           +                 +   +   LL + R          + +     WD+   + + 
Sbjct: 581 NEKDMLRVIRNHRRAAHNLSEDEYENLLVKPRGIDSEYCPGYLFKAVGSVWDDALAKGEK 640

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F +VN  +   LK+ 
Sbjct: 641 DGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALKRL 700

Query: 814 DLWDEAMISDLKYHDG 829
              D  +    KY  G
Sbjct: 701 GYSDTDIDEIEKYCKG 716



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 45/151 (29%), Gaps = 14/151 (9%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA--------FEID 852
           +    N L+      E   +   Y  G+  I     +  +   +   A          I 
Sbjct: 780 DPHF-NMLEALGASSEDARAANDYVCGTMTIEGAPHLRLEHLPVFDCAGTCGLKGVRYIK 838

Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           PM  +   S  Q ++  A S  + +    + +++  +Y  AW   +K     R  S  S 
Sbjct: 839 PMAHVRMMSAVQPFVSGAISKTVNMPPTATVEEISDVYLTAWQSMVKAITIYRDGSKLSQ 898

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             S        L+ V +            P 
Sbjct: 899 PLS--NSSYQDLDEVIMLGTEDDLDETLGPK 927


>gi|188580303|ref|YP_001923748.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium populi BJ001]
 gi|179343801|gb|ACB79213.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium populi BJ001]
          Length = 1243

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 129/746 (17%), Positives = 236/746 (31%), Gaps = 124/746 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+                ++ +       ++   V       ++ +
Sbjct: 47  WSQVAADVLAQKYFRKA----------GVPARLKRVEENSVPSFLWRSVPDEAALTALPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +            D              YF     +   M +  FM     VA      
Sbjct: 97  EERYVSEISSTQVFDRLAGCWTYWGWKGGYFSSEEDASAFMDELRFMLARQMVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           +        T   +   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPSQGHFYCDPKTGALTKSATAYEHPQPHACFIQSVQDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +R       G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSMLRAENER-LGGGGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------------------- 473
           + A    ++  H D+E F+D +                                      
Sbjct: 276 RAAKMVIVDIDHPDIEAFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACIQCEAEGDAC 335

Query: 474 ---------RRTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDL 510
                    +R         +PD ++KRV Q              +  W   +   V+  
Sbjct: 336 FDAERNPALKREIKAARKAMVPDAYIKRVVQFARQGFTKIEFPVYDTDWDSEAYLTVAGQ 395

Query: 511 HDLYGKEFEIAYENYERQ------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +          +              R   KV + + A  LW K+    + +  P + F 
Sbjct: 396 NSNNSVSLTDTFLRAVEADGDWSLTARTTGKVTKTLKARDLWEKIGEAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLA 622
              N        G + +SN C+E        +   CNL S NLL  +      FD +   
Sbjct: 456 TTMNDWHTCPTGGRIRASNPCSEYMF----LDDTACNLASANLLTMYDRQAKHFDVEAFE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R    VL+  + +     ++  + ++ +R +GLG       L  + +PY S +   +
Sbjct: 512 HLNRLWTVVLEISVMMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDQGRAL 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGVF------PID 724
           A      ++  A + S E+A E G + ++  +                G         + 
Sbjct: 572 AGALTAIMTGVAYATSAEMAAELGTFEAYPENADHMLRVIRNHRRAAHGEATGYEGLNVA 631

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
            + L      +  +   +R  WD      +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVPLDHANIPQGDIGAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-------------HDG 829
           P +  + + K    G F ++N  + + L+     +  +     Y             + G
Sbjct: 692 PDFALVKFKKLAGGGYFKIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAINPG 751

Query: 830 SIGNIERIPDDLKKI---HATAFEID 852
           S+       D +  +     +AF+I 
Sbjct: 752 SLRAKGFSDDKIAAVEAGLKSAFDIK 777



 Score = 88.0 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +       L       + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKDTLKVPAEKLADPTFELLPFLGFSKKEIEAANTHVCGAMTLEGAPFLKREHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGRTGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKAAYLLSWRLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|92117612|ref|YP_577341.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           hamburgensis X14]
 gi|91800506|gb|ABE62881.1| ribonucleoside-diphosphate reductase class II [Nitrobacter
           hamburgensis X14]
          Length = 1263

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 124/608 (20%), Positives = 214/608 (35%), Gaps = 107/608 (17%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F     T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++
Sbjct: 175 YYVDFKTGKMTRSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 235 FSRLRGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETY 293

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           +D                                 + +GDD          RR   +   
Sbjct: 294 IDWKVKEEQKVAALVTGSKLNQKHLKAIMKACVNCEGSGDDCFDPEKNPALRREIKLARR 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYEN 524
             + D  +KRV Q              +  W   +   VS  +         +F  A E 
Sbjct: 354 ALVNDNVIKRVIQYARQGYKDIDFPVYDTDWDSEAYLTVSGQNSNNSVSLRDDFLRAVET 413

Query: 525 Y--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   KV + + A  LW K+    + +  P + F    N     +  G + +S
Sbjct: 414 DGDWNLIGRTNKKVMKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NL+  +     +FD D      R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLITFYDTALKRFDVDAYEHVCRLWTVVLEISVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              +   + ++  R +GLG       L  + +PY S E   +       ++  A   S E
Sbjct: 530 FPSKAIAELSYEFRTLGLGFANIGGLLMTMGLPYDSKEGRALCGALTAIMTGIAYKTSAE 589

Query: 701 LAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDELAMNRTS 742
           +A E GA+  +K +                G         ++ + L      +  +   +
Sbjct: 590 MAGELGAFHGYKKNTGHMLRVIRNHRRAALGQSHGYEALAVNPVPLDHASCPQADLIVHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
              WD+     +  G RN+    +APT TI  +    +  I+P +  + + K    G + 
Sbjct: 650 TKAWDDALALGEQHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA- 846
           ++N  +   L+     +  +     Y    GS+ N   I            + + K+   
Sbjct: 710 IINRAVPEALRVLGYRESEIAEIEAYAVGHGSLSNAPGINVSTLKAKGFTDEAIAKVEKA 769

Query: 847 --TAFEID 852
             TAF+I 
Sbjct: 770 LPTAFDIK 777



 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + S   + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FIRDTLGIDSETIASPTFDLLAAVGFSKREIEAANVHICGAMTVEGAPHLKAEHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ +       Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAASQPFISGAISKTINMPNDATVDDCKSAYLLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|241204320|ref|YP_002975416.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858210|gb|ACS55877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1271

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 116/574 (20%), Positives = 207/574 (36%), Gaps = 93/574 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSMLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +          
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 474 --------------------------------------RRTHDMNTANWIPDLFMKRVTQ 495
                                                 +R       + +P+ +++RV Q
Sbjct: 308 VTGSKVVAKHLKAIMKACFNCEGGDNGDCYDPNKNPALKREIRAAKKDQVPENYVQRVIQ 367

Query: 496 --------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENYERQA--DRGEIK 535
                         +  W   +   VS    +       +F  A EN        R + +
Sbjct: 368 FARQGYKDLQFKTYDTDWDSEAYLTVSGQNSNNSVSIKDDFLRAVENDGEWNLTARKDGR 427

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
           V + + A  LW  +    + +  P I F    N        G +  SN C+E        
Sbjct: 428 VMKTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----L 483

Query: 596 ETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
           +   CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +
Sbjct: 484 DDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEY 543

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  
Sbjct: 544 RTLGLGYANIGGLLMSTGIPYDSTEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAP 603

Query: 714 SLWDQGVFPIDSIG------------------LLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +         +                     L+     +  +   ++  WD+  +  + 
Sbjct: 604 NRESMLKVIRNHRRAAHGESSGYEALSINPVALIHSENPDQDLVAHAKSAWDKALELGEQ 663

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L+  
Sbjct: 664 HGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPDALRTL 723

Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
              +  +     Y  G  GN+ + P        T
Sbjct: 724 GYSESQIAEIEAYAVGH-GNLNQAPAVNPSTLKT 756



 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 49/163 (30%), Gaps = 11/163 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     + L       + + +   +  G  ++     + ++   +   
Sbjct: 790 FLKETLKVSDEQLGDMSFSLLDHIGFSKKDIEAANIHVCGAMTLEGAPFLKNEHLPVFDC 849

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 850 ANPCGKVGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLGLK 909

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
                R  S  S   ++    D            +   +  + 
Sbjct: 910 ANALYRDGSKLSQPLNSSLIEDEDDEDALEELLQAPLAAQAVT 952


>gi|115524508|ref|YP_781419.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisA53]
 gi|115518455|gb|ABJ06439.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisA53]
          Length = 1255

 Score =  191 bits (484), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 122/594 (20%), Positives = 214/594 (36%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 193 SAYEHPQPHACFIQGIQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 251

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL----------- 465
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D            
Sbjct: 252 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEAYIDWKVKEEQKVAAL 311

Query: 466 --------------------RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ- 495
                                + +GDD          RR   +     + D  +KRV Q 
Sbjct: 312 VTGSKINQKHLKAVLKACVNCEGSGDDCFDPEKNPALRREIKLARRALVTDNMIKRVIQY 371

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKV 536
                        +  W   +   VS  +       +  +              R   KV
Sbjct: 372 AKQGYKEIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLTARTSKKV 431

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + I A  LW K+ T  + +  P + F    N     +  G + +SN C+E        +
Sbjct: 432 MKTIKARDLWEKIGTAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF----LD 487

Query: 597 TAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S NLL  +     +FD D      R    VL+  + +     ++  + ++  R
Sbjct: 488 DTACNLASANLLTFYDIEAKRFDVDAYEHLCRLWTVVLEVSVMMAQFPSKQIAELSYEFR 547

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L  + + Y S E   +       ++  + + S E+AQ+ G +  +K +
Sbjct: 548 TLGLGFANIGGLLMTMGLSYDSKEGRALCGGLTAIMTGVSYATSAEMAQKLGPFPGYKKN 607

Query: 715 ------------LWDQGVFP------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         +  + L      +  +   ++  WD   +  +  
Sbjct: 608 ASHMLRVIRNHRRAAHGESRGYEALAVAPVPLDHASCPQPEIITHAKAAWDRALELGELH 667

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  I+P +  + + K    G + ++N  +   L+   
Sbjct: 668 GYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPAALRVMG 727

Query: 815 LWDEAMISDLKYH--DGSIGNIERI-----------PDDLKKIHA---TAFEID 852
             +  +     Y    GS+ N   I            + LKK+ A   TAF+I 
Sbjct: 728 YPESQIAEIEAYAVGHGSLSNAPAINHSTLKAKGFTDEALKKVEAALPTAFDIK 781



 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 11/112 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L         + +   +  G  ++     +  +   +   A          +     I
Sbjct: 811 DLLAAIGFSKREIEAANIHICGAMTVEGAPHLKAEHYAVFDCANPCGKIGKRYLSVESHI 870

Query: 858 ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              +  Q +I  A S  + + ++ + +     Y  +W + LK     R  S 
Sbjct: 871 RMMAAAQPFISGAISKTINMPNDATVEDCKSAYLLSWKLALKANALYRDGSK 922


>gi|146276981|ref|YP_001167140.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555222|gb|ABP69835.1| ribonucleoside-diphosphate reductase class II [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 1239

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/563 (20%), Positives = 195/563 (34%), Gaps = 90/563 (15%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +RG G  + G 
Sbjct: 212 SAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGTNFSSLRGEGEKLSG- 270

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHI------------------- 457
            GKS G++ FLK+ +  A A+  G   R+ A     +  H                    
Sbjct: 271 GGKSSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVICDMDHPDIEQFINWKVIEEQKVASL 330

Query: 458 ------------DVEEFL---DLRKNTGDDRRRTHDMNTAN------WIPDLFMKRVTQ- 495
                       D+   +   D       D      + TA        IP+ ++ RV Q 
Sbjct: 331 VAGSKQHEAKLNDIFAAIRSFDGSIEGATDPAGNAGLKTAIRAAKKAMIPETYINRVLQY 390

Query: 496 -------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKV 536
                        +  W   +   VS  +         A+              R + KV
Sbjct: 391 ARQGFSSIEFPTYDTDWDSEAYITVSGQNSNNSVRVTDAFLRAVKEDADWALLRRTDGKV 450

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW ++    +    P I F D  N        G +  SN C+E        +
Sbjct: 451 AKTVKARELWDQVGHAAWACADPGIQFHDTVNAWHTCPEDGPIRGSNPCSEYMF----LD 506

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
              CNL S+NLL  F   +FD D      R     L+  + +     ++  + +   R +
Sbjct: 507 DTACNLASMNLLTFFEGGRFDADAYIHATRLWTLTLEVSVMMAQFPSKEIAQLSFDFRTL 566

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-- 714
           GLG       L  + + Y S E   +       ++  A + S E+A E GA++ ++ +  
Sbjct: 567 GLGYANIGGLLMNMGLGYDSKEGRALCGALSAIMTGVAYATSAEMAAELGAFAGYQRNAQ 626

Query: 715 ----------LWDQGVFPIDSIGLLAEVRDELAMNRT-----SRLPWDELKKRVKTIGMR 759
                         G    +++ +     D            ++  WDE     +  G R
Sbjct: 627 HMLRVIRNHRAAAHGATSYEAVNVAPVPLDAANCPDARLVSLAKSAWDEALALGEAHGYR 686

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           N+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+      
Sbjct: 687 NAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINQSVPAALETLGYSS 746

Query: 818 EAMISDLKYH--DGSIGNIERIP 838
             +   + Y    G++ N   I 
Sbjct: 747 AQISQIVAYAVGHGTLANCPAIS 769



 Score = 74.5 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 43/146 (29%), Gaps = 11/146 (7%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L+        + +   +  G+  +     +  +   +   A          +     I
Sbjct: 827 DLLRHLGFTKAQIDAANDHVCGTMTLEGAPHLKAEHLPVFDCANPCGKKGRRYLSVESHI 886

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
              +  Q +I  A S  + +    +  ++   Y  +  +G+K     R  S  S   ++ 
Sbjct: 887 HMMAAAQSFISGAISKTINMPNSATIAEVLAAYELSHSLGIKANALYRDGSKLSQPLASA 946

Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942
              D +     +        ++ I  
Sbjct: 947 LVEDDEEAEEILATGTPQEKAIVIAE 972


>gi|326804461|ref|YP_004327265.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           PAK_P1]
 gi|290873874|gb|ADD65077.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           PAK_P1]
          Length = 581

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 130/650 (20%), Positives = 225/650 (34%), Gaps = 124/650 (19%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--MGLALKETEKEKRAVE--------- 341
           +   G Q+   +Y         E  ++ F  VA  M         E    +         
Sbjct: 26  YTTAGYQLFMKKYSNEG-----ESVRSRFETVARAMAQHAPTVYPEWWDQDEYTRGKNWE 80

Query: 342 --FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F++++       STP L N G  +     SC    + ++LY  +  + E A+L K+S 
Sbjct: 81  QAFFDVMWDGFVSPSTPLLSNGGLRKKGTTVSCAGGLMDNNLYDRYNVMTEIAVLTKHSH 140

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G     T     G  I    G+SQGV+P ++   +    V QG  R+G+    +   H D
Sbjct: 141 GTSFSLTNWPSEGDAIR--GGESQGVMPVIRDVINVMEEVAQGS-RRGSCAYSINPRHGD 197

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
               +       D   +  + N   W+ D    +                          
Sbjct: 198 FWNVI-------DHLYKRTESNNVGWLLDDNWCKAMAEKDPETLKR-------------- 236

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
                                      W++M+ +    G  + TF D  N    +     
Sbjct: 237 ---------------------------WKRMMFVKLARGKGYFTFIDKMNRHLAEPFKRA 269

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVR 630
              V +SNLC E  L ++   T  C + + NL  + +  +            +       
Sbjct: 270 GLKVEASNLCQETVLPANDWYTFSCVILNYNLELYRSWPEHLVFIGQVMSDCNISEYLAT 329

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           + D V   +   +EK  +     RA+G G++GF + L     P  S +A+ + +   + +
Sbjct: 330 M-DEVSIQDRRALEKIYRFTKDFRALGSGVLGFHTLLQRERFPVGSMDAMFLNNAIFKGM 388

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A + +  LA   G     +G                                     
Sbjct: 389 KEQAEACNSWLAAVLGEPEGCRG------------------------------------- 411

Query: 751 KRVKTIGMRNSNCMAIAPTATIA-NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                +G RN+  M + PT + A  + G S+ I       + K +  G+F  VN  L+  
Sbjct: 412 -----LGKRNATTMMMPPTKSTAELMAGASEGIGLDVAMCFTKQSAGGEFFRVNKVLLEI 466

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +++R L  E     +    GS+ +++ + D  K +  TAFE+     +   S+RQK+IDQ
Sbjct: 467 IQERGLDWEECARQINERKGSVQHVDWLTDHEKAVFRTAFEVRMEDYLRLCSQRQKYIDQ 526

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWL-MGLKTTYYLRSRSATSVEKSTLK 917
            QS+NLY     S   + +I+R A     + + YY+ S         T +
Sbjct: 527 GQSINLYFTSNDSPAYISYIHRLAMEDPNILSLYYIYSMRGAGDISRTEE 576


>gi|167840936|ref|ZP_02467620.1| hypothetical protein Bpse38_29954 [Burkholderia thailandensis
           MSMB43]
          Length = 613

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/598 (20%), Positives = 202/598 (33%), Gaps = 69/598 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +                   ++SCF+  +            + 
Sbjct: 62  PAATRSSAARRFYRNLLNGALGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFQPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       LG D++ +   GA        S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADLGYDFSDIPPAGARPDADQPTSPGVRAALDRFDRIGAQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
             A  A L   H D+  F   +            +  A  + D FM+ V Q+  WTL  P
Sbjct: 182 HRAQLAVLRCDHPDLSAFATAKCGRERGHAHRTTLELAVAVTDAFMQAVEQDLPWTLRHP 241

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               D                           +  + A  LWR+++    +   P + F 
Sbjct: 242 APPRDAAS-------------GALPAADGAWTYASVPARNLWREIVAAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+++L     N         FD
Sbjct: 289 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAVDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +DI    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDAAVRVEVRLLDNALDIARWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +   A SAS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRNLAYSASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+RNS+  + AP   ++   G   S  I+P+   +  ++  
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRNSHLTSFAPAVGVSLAFGDNCSPGIEPARAWIEHRTVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L     S+   ER+   L +  AT  +I P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFR---SLRG-ERVA--LPEYFATEADIAPGD 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
            +   +  Q  +D      L L    S ++++ +   AW   LK+    R+  A   +
Sbjct: 549 RLAMRAALQPCVDAGIGNTLTLASHYSLEEVNALLFAAWRAKLKSVAIRRTDLARDAQ 606


>gi|240137599|ref|YP_002962070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens AM1]
 gi|240007567|gb|ACS38793.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens AM1]
          Length = 1243

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 131/746 (17%), Positives = 234/746 (31%), Gaps = 124/746 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+                ++ +       ++   V        + +
Sbjct: 47  WSQVAADVLAQKYFRKA----------GVPARLKKVEENSVPSFLWRAVPDEAALAELPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +            D              YF     +   M +  FM     VA      
Sbjct: 97  EERFVSEISATQVFDRLAGCWTYWGWKGGYFSSEEDAAAFMDELRFMLARQMVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           +        T   +   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPSQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +RG      G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSMLRGENER-LGGGGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------------------- 473
           + A    ++  H DVE F+D +                                      
Sbjct: 276 RAAKMVIVDIDHPDVENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDAC 335

Query: 474 ---------RRTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDL 510
                    +R         +PD ++KRV Q              +  W   +   V+  
Sbjct: 336 FDPERNPALKREIKAARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQ 395

Query: 511 HDLYGKEF-EIAYENYERQAD-----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +        +      E         R   KV +   A  LW K+    + +  P + F 
Sbjct: 396 NSNNSVSLTDEFLRAVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLA 622
              N        G + +SN C+E        +   CNL S NLL  +      FD +   
Sbjct: 456 TTMNDWHTCPEGGRIRASNPCSEYMF----LDDTACNLASANLLTMYDRQSKHFDVEAFE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R    VL+  + +     ++  + ++ +R +GLG       L  + +PY S +   +
Sbjct: 512 HLNRLWTVVLEISVMMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRAL 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI---------------- 726
           A      ++  A + S E+A E G + ++  +         +                  
Sbjct: 572 AGALTAIMTGVAYATSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVS 631

Query: 727 --GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
              L      +  +   +R  WD      +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVPLDHANIPQADIGAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-------------HDG 829
           P +  + + K    G F ++N  + + L+     +  +     Y             + G
Sbjct: 692 PDFALVKFKKLAGGGYFKIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAVNPG 751

Query: 830 SIGNIERIPDDLKKI---HATAFEID 852
           S+       D +  +     +AF+I 
Sbjct: 752 SLRAKGFTDDKIAAVEAGLKSAFDIK 777



 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     +  +   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 831 TLEGAPFLKPEHYAVFDCANPCGRTGKRYLSVESHIHMMAAAQPFISGAISKTINMPNDA 890

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W + LK     R  S 
Sbjct: 891 TVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|163850534|ref|YP_001638577.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium extorquens PA1]
 gi|163662139|gb|ABY29506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium extorquens PA1]
          Length = 1243

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 131/746 (17%), Positives = 234/746 (31%), Gaps = 124/746 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+                ++ +       ++   V        + +
Sbjct: 47  WSQVAADVLAQKYFRKA----------GVPARLKKVEENSVPSFLWRAVPDEAALAELPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +            D              YF     +   M +  FM     VA      
Sbjct: 97  EERFVSEISATQVFDRLAGCWTYWGWKGGYFSSEEDAAAFMDELRFMLARQMVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           +        T   +   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPSQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +RG      G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSMLRGENER-LGGGGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------------------- 473
           + A    ++  H DVE F+D +                                      
Sbjct: 276 RAAKMVIVDIDHPDVENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDAC 335

Query: 474 ---------RRTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDL 510
                    +R         +PD ++KRV Q              +  W   +   V+  
Sbjct: 336 FDPERNPALKREIKAARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQ 395

Query: 511 HDLYGKEF-EIAYENYERQAD-----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +        +      E         R   KV +   A  LW K+    + +  P + F 
Sbjct: 396 NSNNSVSLTDEFLRAVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLA 622
              N        G + +SN C+E        +   CNL S NLL  +      FD +   
Sbjct: 456 TTMNDWHTCPEGGRIRASNPCSEYMF----LDDTACNLASANLLTMYDRQSKHFDVEAFE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R    VL+  + +     ++  + ++ +R +GLG       L  + +PY S +   +
Sbjct: 512 HLNRLWTVVLEISVMMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRAL 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI---------------- 726
           A      ++  A + S E+A E G + ++  +         +                  
Sbjct: 572 AGALTAIMTGVAYATSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVS 631

Query: 727 --GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
              L      +  +   +R  WD      +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVPLDHANIPQADIGAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-------------HDG 829
           P +  + + K    G F ++N  + + L+     +  +     Y             + G
Sbjct: 692 PDFALVKFKKLAGGGYFKIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAVNPG 751

Query: 830 SIGNIERIPDDLKKI---HATAFEID 852
           S+       D +  +     +AF+I 
Sbjct: 752 SLRAKGFTDDKIAAVEAGLKSAFDIK 777



 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     +  +   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 831 TLEGAPFLKPEHYAVFDCANPCGRTGKRYLSVESHIHMMAAAQPFISGAISKTINMPNDA 890

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W + LK     R  S 
Sbjct: 891 TVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|13470431|ref|NP_101999.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium
           loti MAFF303099]
 gi|14021172|dbj|BAB47785.1| ribonucleotide reductase [Mesorhizobium loti MAFF303099]
          Length = 1312

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 143/757 (18%), Positives = 258/757 (34%), Gaps = 124/757 (16%)

Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271
           K P+ + V   F L+ +      +       A  +  +   P    +  E  V + L   
Sbjct: 83  KNPDGSVV---FRLDNIDVPAQFSQVAADILAQKYFRKAGVPARLKKVEENDVPSFLWRS 139

Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM-RVAMGLAL 330
              + +L  L    +Y  +     +  ++     +    G   +  +     R  +   L
Sbjct: 140 VADEAELAKLPEAERYGSEIDARQVFDRLAGTWTYWGWKGGYFKSEEDARAFRDELAYML 199

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFN--------------SGTRHPQLSSCFLTTV 376
                   + +++N    + +    P+  +              S   HPQ  +CF+  V
Sbjct: 200 ATQRVAPNSPQWFNTGLHWAYGIDGPSQGHFYVDPFTGKLTKSKSSYEHPQPHACFIQGV 259

Query: 377 PD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
            D   +  GI       A L KY  G G++++ +RG G  + G  G+S G++ FLK+ + 
Sbjct: 260 QDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRGEGEKLSG-GGRSSGLMSFLKIGDR 318

Query: 434 TAVAVNQG-GKRKGAVCAYLETWHID-------------------------------VEE 461
            A A+  G   R+ A    ++  H D                               + +
Sbjct: 319 AAGAIKSGGTTRRAAKMVIVDADHPDIEEFIDWKVNEEQKVASLVTGSKIVKKHLEAIMK 378

Query: 462 FLDLRKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ--------------NAG 498
                +  G+D          +R       + +P+ ++ RV Q              +  
Sbjct: 379 ACVNCEGNGEDCFDPAINTALKREIKAAKKSAVPENYIYRVIQFAKQGYKSMSFKTYDTD 438

Query: 499 W----TLFSPDEVSDLHDLYGKEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTM 552
           W     L    + S+        F  A E+        R + KV + + A  LW K+   
Sbjct: 439 WDSDAYLTVSGQNSNNSVSLKDNFLRAVEDDADWHLTARKDGKVLKTLKARDLWEKIGYA 498

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
            + +  P + F    N        G + +SN C+E        +   CNL SINLL +  
Sbjct: 499 AWASADPGLHFNTTMNDWHTCASAGAIRASNPCSEYMF----LDDTACNLASINLLPYRN 554

Query: 613 NN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            +   D      T+R    VL+  + +     ++  K ++ +R +GLG       L    
Sbjct: 555 ADGTIDIAAYEHTVRLWTIVLEISVMMAQFPSKEIAKLSYEYRTLGLGYANIGGLLMTSG 614

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK------------------G 713
           IPY S E   I       ++  A S S E+A E GA+  +                   G
Sbjct: 615 IPYDSDEGRAICAALTAIMTGVAYSTSAEMASELGAFPDYDRNAQNMLRVMRNHRRAAYG 674

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
                    ++ + L+A    + A+   ++  WD   +  +  G RN+    IAPT TI 
Sbjct: 675 DKDGYEKLAVNPVPLVASDLKQQALAEHAKAAWDRAIELGEEHGYRNAQATVIAPTGTIG 734

Query: 774 NICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DG 829
            +    +  I+P +  + + K    G F ++N  +   L+     +  +     Y    G
Sbjct: 735 LVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHG 794

Query: 830 SIGNIERI-PDDLKKI-------------HATAFEID 852
           ++     I P  LK                 +AF+I 
Sbjct: 795 NLNQAPGINPGSLKAKGFSDDKIAALNAALKSAFDIK 831



 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 11/153 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +VK         +N F    L       + + +   +  G  ++     +  +   +   
Sbjct: 843 WVKETFGFTDEQLNDFSFEMLPAMGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLAVFDC 902

Query: 848 A--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I+  +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 903 ASPCGKIGKRSLSINSHIQMMAAAQPFISGAISKTINMPNDATVEDAKGAYMLSWKLALK 962

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931
                R  S  S   +     DG+ +     + 
Sbjct: 963 ANALYRDGSKLSQPLNASLLADGEEDEDEAVEQ 995


>gi|304321238|ref|YP_003854881.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula
           bermudensis HTCC2503]
 gi|303300140|gb|ADM09739.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 1196

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 206/569 (36%), Gaps = 97/569 (17%)

Query: 363 TRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             +PQ  +CF+ +V D      GIF      A L KY  G G++++ +RG    + G  G
Sbjct: 175 YAYPQPHACFIQSVSDSLVGENGIFDLWSREARLFKYGSGSGSNFSAIRGEDEPLAG-GG 233

Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
           KS G+I FLKV +  A A+  GG  R+ A    L+  H D+E F+D +     + ++   
Sbjct: 234 KSSGLISFLKVGDTAAGAIKSGGITRRAAKMVVLDIDHPDIENFIDWK---VKEEQKVAA 290

Query: 479 MNTANWIPD---LFMKRVTQNAGWT----------------------------------- 500
           + T + +       M    +                                        
Sbjct: 291 LVTGSLVTKRHVEAMFAAIKRGDEDDRLDPTRNEILRRVMKAARRDGVPDGIIGRALSLA 350

Query: 501 LFSPDEVSDLHDLYGKEFEIAYE------------------------NYERQADRGEIKV 536
                E+       G + + AY                                R +  V
Sbjct: 351 ASGRTEMPLDVYTVGWD-DEAYRTVSGQNANNSIRLTGEFLVAVDDDQQWPLTRRTDGGV 409

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + +SA ALW K+    + +  P + F D  N        G + +SN C+E    +    
Sbjct: 410 HKSVSARALWEKIGEAAWASADPGLQFHDTINDWHTCPMDGDIEASNPCSEYMFLND--- 466

Query: 597 TAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              CNL SINLLA    + + D D L  TIR    VL+  + +  +   +  + ++ +R 
Sbjct: 467 -TACNLASINLLAFLQEDGELDLDGLIHTIRLWTIVLEISVGMASYPDARIAQRSYDYRT 525

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG       L    +PY S      A      ++  A   S +LA   G +  F  + 
Sbjct: 526 LGLGFANLGGLLMSAALPYDSDRGRAAAGALSALMTAIAYKTSADLAARLGPFPRFDANK 585

Query: 716 WDQGVFP-----------IDSIGLLAEVRDELAMN-----RTSRLPWDELKKRVKTIGMR 759
                              D + +     DE A+        +   WDE   + +  G+R
Sbjct: 586 EAVLRVMRNHRAALTGDDFDDLSVTPPRFDEGAVPFAGLVAAASSAWDEAISKAERSGVR 645

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           N+   AIAPT TI  +    +  I+P +  + + +    G   ++N  +   L +    D
Sbjct: 646 NAQVTAIAPTGTIGLVMDCDTTGIEPDFALVKFKQLAGGGTVRLINQSVPRALARLGYTD 705

Query: 818 EAMISDLKYH--DGSIGNIERIP-DDLKK 843
           + +     +    GS+ +   +  DDL++
Sbjct: 706 QQIREIKAFAVGHGSLDHAPGVSFDDLRR 734



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 20/142 (14%)

Query: 787 QNLYVKSNMSGDFTVVNSFLVNE---------LKQRDLWDEAMISDLKYHDGS--IGNIE 835
              + K  +   F      L +          L++    DE +     +  G+  +    
Sbjct: 756 SFAFTKDVLGEAFLRGTLHLNDAQLDQSGYALLRELGFSDEDIHRANLFCCGTMTVEGAP 815

Query: 836 RIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886
            +  +   I   A +        +     I+  +  Q +I    S  + L    + +   
Sbjct: 816 HLQPEHYAIFDCATQCGRTGTRSLSVAAHIDMMAACQPFISGGISKTVNLPHRATVEDCV 875

Query: 887 FIYRQAWLMGLKTTYYLRSRSA 908
             YR A+  GLK+    R  S 
Sbjct: 876 KTYRAAYHRGLKSISLYRDGSK 897


>gi|254500218|ref|ZP_05112369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Labrenzia alexandrii DFL-11]
 gi|222436289|gb|EEE42968.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Labrenzia alexandrii DFL-11]
          Length = 1222

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 129/715 (18%), Positives = 240/715 (33%), Gaps = 132/715 (18%)

Query: 262 EGVKARLLHESMMDFDLVY--LANDLKYERDFAFEYLGLQILYD----RYFLHINGSRIE 315
           + V+   +   +   +     LA   + ER +  E  G Q+         +    G   +
Sbjct: 70  KPVEENTVPSWLWRQEADEKALAKLPEDER-YGSEMDGRQVFDRLAGTWTYWGWKGGYFD 128

Query: 316 M---PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG---------- 362
                QAFF    +   L   +    + +++N    + +    P+  +            
Sbjct: 129 TEADAQAFFDE--LRYMLATQKVAPNSPQWFNTGLHWAYGIDGPSQGHYYVDFQTGKLTK 186

Query: 363 ----TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415
                 HPQ  +CF+ +V D   +  GI       A L KY  G G++++ VR  G  + 
Sbjct: 187 SKTAYEHPQPHACFIQSVGDDLVNDGGIMDLWVREARLFKYGSGTGSNFSHVRAEGEKLS 246

Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR- 473
           G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++ +        
Sbjct: 247 G-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEEYINWKVKEEQKVA 305

Query: 474 ---------------------------------------RRTHDMNTANWIPDLFMKRVT 494
                                                  +R         +P+ +++RV 
Sbjct: 306 ALVTGSKICQKHLTAIMRACVNCEADNGDCFDPAKNPALKREIRAAKKMMVPENYIQRVI 365

Query: 495 Q--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK----- 535
           Q              N  W   +   V+  +          + N   +    ++      
Sbjct: 366 QFAKQGFTKIEFPTYNTDWDSEAYLTVAGQNSNNSVRVTDGFLNAVVEDKEWDLTARKTD 425

Query: 536 -VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
            V + + A  LW ++    + +  P + +    N        G + +SN C+E       
Sbjct: 426 TVLKTVKAKELWEQIGYAAWASADPGLQYHTTINDWHTCLADGEIRASNPCSEYMF---- 481

Query: 595 EETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            +   CNL S+NL+     +  F  D     +R    VL+  + +     ++  + ++  
Sbjct: 482 LDDTACNLASLNLMQFRNEDGSFAIDNYEHGVRLWTIVLEISVLMAQFPSKEIAELSYKF 541

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
           R +GLG       L    IPY S E   I       ++  + + S E+A E G++  +K 
Sbjct: 542 RTLGLGYANIGGLLMTAGIPYDSDEGRAICGALTAVMTGVSYATSAEMAGELGSFPGYKK 601

Query: 714 SLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKRVKT 755
           +         +                     L      E  +   ++  WD   +  + 
Sbjct: 602 NAKHMLRVIRNHRLAAHGKAEGYEGLKTNPVPLDHASCPEPILVERAKKAWDRALELGEK 661

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
            G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L++ 
Sbjct: 662 NGFRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRKL 721

Query: 814 DLWDEAMISDLKYH--DGSIGNIERIPD--------------DLKKIHATAFEID 852
              +  +     Y    GSI     I                 LK    +AF+I 
Sbjct: 722 GYSESEIGEIEAYAVGHGSIDQAPGINPASLKTKGFTDESLAKLKDGMKSAFDIK 776



 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 829 TLEGAPFLKEEHYPVFDCANPCGRIGKRFLSVESHIRMMAAAQPFISGAISKTINMPNDA 888

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W + LK     R  S 
Sbjct: 889 TVEDCKEAYMLSWKLALKANALYRDGSK 916


>gi|83717836|ref|YP_440500.1| ribonucleotide reductase-like protein [Burkholderia thailandensis
           E264]
 gi|167617291|ref|ZP_02385922.1| hypothetical protein BthaB_13373 [Burkholderia thailandensis Bt4]
 gi|83651661|gb|ABC35725.1| Ribonucleotide reductase, barrel domain [Burkholderia thailandensis
           E264]
          Length = 615

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/593 (19%), Positives = 201/593 (33%), Gaps = 67/593 (11%)

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIFGALQ 388
           +   A  FY  L +     S             ++SCF+  +            +  AL 
Sbjct: 66  RSGAARRFYRNLLNGALGASRVMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALD 125

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E  +       +G D++ +    A        S GV   L+          +   R+ A 
Sbjct: 126 EARLALAMGADIGYDFSDIPPASARPDSGQPASPGVCAALERFERIGAQAGERDGRRRAQ 185

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            A L   H D+  F   +        R   +  A  + D FM+ V Q+  W L  P    
Sbjct: 186 LAVLRCDHPDLPAFAAAKCGPKRGHARWTTLGLAVAVTDAFMRAVEQDLPWALRHPAPPR 245

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D                           +  + A  LWR++++   +   P + F D   
Sbjct: 246 D-------------APSGALPAEDGAWTYASVPARHLWREIVSAARDGAGPGLVFVDAIA 292

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKL 621
              P +    + + + C    L           LG+I+L     N         FD+   
Sbjct: 293 AADPLRGHERIGAMSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFDFAAF 348

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP A E
Sbjct: 349 DTAVRVEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAARE 408

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A      +  HA +AS ELA ERGAY                    L + +  L   R 
Sbjct: 409 MARYVASDLRNHAYAASAELAAERGAYP-------------------LCDRQAHLDALRA 449

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDF 799
                  +   V+  G+RNS+  + AP A ++   G   S  I+P+   +  ++  +G  
Sbjct: 450 GPPLPHAVCHAVERDGLRNSHLTSFAPVAGVSLAFGDNCSPGIEPARAWIEHRTVRAGAG 509

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           T     +  E     L+                        L    AT  ++ P   +  
Sbjct: 510 TSGAPGMRAENHAHRLFRSLRGER---------------AALPDYFATDADVSPSERLAM 554

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q ++D      L L    S ++++ +   AW   LK+    R+  A   
Sbjct: 555 RAALQPYVDAGIENTLTLASHYSLEEVNALLFAAWRAKLKSVAIRRTDLARDA 607


>gi|257141158|ref|ZP_05589420.1| ribonucleotide reductase-like protein [Burkholderia thailandensis
           E264]
          Length = 596

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/593 (19%), Positives = 201/593 (33%), Gaps = 67/593 (11%)

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIFGALQ 388
           +   A  FY  L +     S             ++SCF+  +            +  AL 
Sbjct: 47  RSGAARRFYRNLLNGALGASRVMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLDEALD 106

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E  +       +G D++ +    A        S GV   L+          +   R+ A 
Sbjct: 107 EARLALAMGADIGYDFSDIPPASARPDSGQPASPGVCAALERFERIGAQAGERDGRRRAQ 166

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            A L   H D+  F   +        R   +  A  + D FM+ V Q+  W L  P    
Sbjct: 167 LAVLRCDHPDLPAFAAAKCGPKRGHARWTTLGLAVAVTDAFMRAVEQDLPWALRHPAPPR 226

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
           D                           +  + A  LWR++++   +   P + F D   
Sbjct: 227 D-------------APSGALPAEDGAWTYASVPARHLWREIVSAARDGAGPGLVFVDAIA 273

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKL 621
              P +    + + + C    L           LG+I+L     N         FD+   
Sbjct: 274 AADPLRGHERIGAMSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFDFAAF 329

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP A E
Sbjct: 330 DTAVRVEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAARE 389

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A      +  HA +AS ELA ERGAY                    L + +  L   R 
Sbjct: 390 MARYVASDLRNHAYAASAELAAERGAYP-------------------LCDRQAHLDALRA 430

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDF 799
                  +   V+  G+RNS+  + AP A ++   G   S  I+P+   +  ++  +G  
Sbjct: 431 GPPLPHAVCHAVERDGLRNSHLTSFAPVAGVSLAFGDNCSPGIEPARAWIEHRTVRAGAG 490

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           T     +  E     L+                        L    AT  ++ P   +  
Sbjct: 491 TSGAPGMRAENHAHRLFRSLRGER---------------AALPDYFATDADVSPSERLAM 535

Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
            +  Q ++D      L L    S ++++ +   AW   LK+    R+  A   
Sbjct: 536 RAALQPYVDAGIENTLTLASHYSLEEVNALLFAAWRAKLKSVAIRRTDLARDA 588


>gi|254560071|ref|YP_003067166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens DM4]
 gi|254267349|emb|CAX23181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           large subunit [Methylobacterium extorquens DM4]
          Length = 1243

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 131/746 (17%), Positives = 234/746 (31%), Gaps = 124/746 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+                ++ +       ++   V        + +
Sbjct: 47  WSQVAADVLAQKYFRKA----------GVPARLKKVEENSVPSFLWRAVPDEAALAELPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +            D              YF     +   M +  FM     VA      
Sbjct: 97  EERFVSEISATQVFDRLAGCWTYWGWKGGYFSSEEDAAAFMDELRFMLARQMVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           +        T   +   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPSQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +RG      G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSMLRGENER-LGGGGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------------------- 473
           + A    ++  H DVE F+D +                                      
Sbjct: 276 RAAKMVIVDIDHPDVENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDAC 335

Query: 474 ---------RRTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDL 510
                    +R         +PD ++KRV Q              +  W   +   V+  
Sbjct: 336 FDPERNPALKREIKAARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQ 395

Query: 511 HDLYGKEF-EIAYENYERQAD-----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +        +      E         R   KV +   A  LW K+    + +  P + F 
Sbjct: 396 NSNNSVSLTDEFLRAVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLA 622
              N        G + +SN C+E        +   CNL S NLL  +      FD +   
Sbjct: 456 TTMNDWHTCPEGGRIRASNPCSEYMF----LDDTACNLASANLLTMYDRQSKHFDVEAFE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R    VL+  + +     ++  + ++ +R +GLG       L  + +PY S +   +
Sbjct: 512 HLNRLWTVVLEISVMMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRAL 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI---------------- 726
           A      ++  A + S E+A E G + ++  +         +                  
Sbjct: 572 AGALTAIMTGVAYATSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVS 631

Query: 727 --GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
              L      +  +   +R  WD      +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVPLDHANIPQADIGVHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-------------HDG 829
           P +  + + K    G F ++N  + + L+     +  +     Y             + G
Sbjct: 692 PDFALVKFKKLAGGGYFKIINRAVPDALRALGYRESEIAEIEAYAVGHGSMGQAPAVNPG 751

Query: 830 SIGNIERIPDDLKKI---HATAFEID 852
           S+       D +  +     +AF+I 
Sbjct: 752 SLRAKGFTDDKIAAVEAGLKSAFDIK 777



 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     +  +   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 831 TLEGAPFLKPEHYAVFDCANPCGRTGKRYLSVESHIHMMAAAQPFISGAISKTINMPNDA 890

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W + LK     R  S 
Sbjct: 891 TVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|294998841|gb|ADF58155.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas phage
           JG004]
          Length = 581

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 135/650 (20%), Positives = 233/650 (35%), Gaps = 124/650 (19%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--MGLALKETEKEKRAVE--------- 341
           +   G Q+   +Y    NG   E  ++ F  VA  M         E    +         
Sbjct: 26  YTTAGYQLFMKKYS---NGG--ESVRSRFQAVARAMAQHAPMVYPEWWDQDEYTKGKNWE 80

Query: 342 --FYNLLSSFHFMCSTPTLFNSG-TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
             F++++       STP L N G  +     SC    + ++LY  +  + E A+L K+S 
Sbjct: 81  QVFFDVMWDGFVSPSTPLLSNGGLRKKGTTVSCAGGLMDNNLYDRYNVMTEIAVLTKHSH 140

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G     T     G  I    G+SQGV+P ++   +    V QG  R+G+    +   H D
Sbjct: 141 GTSFSLTNWPSEGDAIR--GGESQGVMPVIRDVINVMEEVAQGS-RRGSCAYSINPRHGD 197

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
               +                       D   KR                   +  G   
Sbjct: 198 FWNVI-----------------------DHLYKRTE----------------SNNVGWLL 218

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577
           +  +     + D   +K ++++  V L R         G  + TF D  N    +     
Sbjct: 219 DDQWCKDMAEKDPETLKRWKRMMFVKLAR---------GKGYFTFIDKMNRHLAEPFKRA 269

Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVR 630
              V +SNLC E  L ++   T  C + + NL  + +  +            +       
Sbjct: 270 GLKVEASNLCQETVLPANDFYTFSCVILNYNLELYRSWPKHLVFIGQVMSDCNISEYLAT 329

Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
           + D V   +   +EK  +     RA+G G++GF + L     P  S +A+ + +   + +
Sbjct: 330 M-DEVSVQDRRALEKIYRFTKDFRALGSGVLGFHTLLQRERFPVGSMDAMFLNNAIFKGM 388

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
              A + +  LA+  G  +  +G                                     
Sbjct: 389 KEQAEACNSWLAEVLGEPAGCRG------------------------------------- 411

Query: 751 KRVKTIGMRNSNCMAIAPTATIA-NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
                +G RN+  M + PT + A  + G S+ I       + K +  G+F  VN  L+  
Sbjct: 412 -----LGKRNATTMMMPPTKSTAELMAGASEGIGLDVAMCFTKQSAGGEFFRVNKVLLEI 466

Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869
           +++R L  E     +    GS+ +++ + D  K +  TAFE+     +   S+RQK+IDQ
Sbjct: 467 IQERGLDWEECARQINERKGSVQHVDWLTDHEKAVFRTAFEVRMEDYLRLCSQRQKYIDQ 526

Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWL-MGLKTTYYLRSRSATSVEKSTLK 917
            QS+NLY     S   + +I+R A     + + YY+ S         T +
Sbjct: 527 GQSINLYFTSNDSPAYISYIHRLAMEDPNILSLYYIYSMRGAGDISRTEE 576


>gi|15965308|ref|NP_385661.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           meliloti 1021]
 gi|307307934|ref|ZP_07587659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti BL225C]
 gi|307317165|ref|ZP_07596606.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti AK83]
 gi|15074488|emb|CAC46134.1| Vitamin B12-dependent ribonucleotide reductase [Sinorhizobium
           meliloti 1021]
 gi|306897253|gb|EFN27998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti AK83]
 gi|306901550|gb|EFN32153.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium meliloti BL225C]
          Length = 1263

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 132/725 (18%), Positives = 243/725 (33%), Gaps = 111/725 (15%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+               +++ +       ++   V      +++  
Sbjct: 47  FSQVAADILAQKYFRKA----------GVPAKLKRVEENDVPSFLWRSVPDNDALKALPK 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +      D +   D              YF     +     +  +M    RVA      
Sbjct: 97  EEQYGSETDARQVFDRLAGTWAYWGWKGGYFDTEEDASAFRDELAYMLATQRVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           ++       T   S   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPGQGHFYVDPFTGKLTKSKSAYEHPQPHACFIQSVADDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSHLRAEGERLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTG------------------------------DDRR 474
           + A    ++  H D+EE+++ +                                  DD  
Sbjct: 276 RAAKMVVVDIDHPDIEEYINWKVKEEQKVAALVTGSKIVAKHLKAIMKACINCDGSDDAC 335

Query: 475 RTHDMNTANW----------IPDLFMKRVTQ--------------NAGWTLFSPDEVS-- 508
                N A            +P+ ++KRV Q              +  W   +   VS  
Sbjct: 336 FDPKQNPALKREIRAAKQALVPENYVKRVIQFARQGYKDIQFKTYDTDWDSEAYLTVSGQ 395

Query: 509 --DLHDLYGKEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             +       +F  A E         R + +V + + A  LW  +    + +  P + F 
Sbjct: 396 NSNNSVSIKDDFLRAVEADGDWHLTARKDGRVMKTLKARDLWESISHAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLA 622
              N        G + +SN C+E        +   CNL S+NL+        + +     
Sbjct: 456 TTMNDWHTCPAAGPIRASNPCSEYMF----LDDTACNLASLNLMQFKDAATKRINIGDYE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +R    VL+  + +      +  + ++ +R +GLG       L    IPY SPE   I
Sbjct: 512 HAVRLWTVVLEVSVMMAQFPSREIAELSYEYRTLGLGYANIGGLLMSSGIPYDSPEGRAI 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSF------------KGSLWDQGVFP------ID 724
           A      ++  A + S E++ + G +  F                   G         ++
Sbjct: 572 AGALTAIMTGVAYATSAEISAKLGPFPGFAPNRDNMLRVMRNHRRAAHGETAGYEGLSVN 631

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
            + L+     +  +   ++  WD+  +  +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVALVHGDCPDQDLIAHAKGAWDKAVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PD 839
           P +  + + K    G F ++N  +   L+     +  +     Y    G++     I P 
Sbjct: 692 PDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEMEAYAVGHGNLNQAPAINPT 751

Query: 840 DLKKI 844
            LK  
Sbjct: 752 TLKAK 756



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      + S   N L+      + + +   +  G  ++     +  +   +   
Sbjct: 789 FLKETLKVSDEQLASMDFNLLEHLGFSRKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|222085732|ref|YP_002544262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Agrobacterium radiobacter K84]
 gi|221723180|gb|ACM26336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Agrobacterium radiobacter K84]
          Length = 1264

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/594 (20%), Positives = 214/594 (36%), Gaps = 107/594 (18%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSLLRGEGEKLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL----------- 465
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+EE+++            
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIEEYINWKVKEEQKVAAL 307

Query: 466 --------------------RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ- 495
                                +   DD          +R       + +P+ +++RV Q 
Sbjct: 308 VTGSKIVAKHLKAIMKATVNCEGDNDDCFDPAKNPALKREIRAAKKDQVPENYVQRVIQF 367

Query: 496 -------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYENY--ERQADRGEIKV 536
                        +  W   +   VS    +       EF  A EN        R + K+
Sbjct: 368 ARQGYKDLEFKTYDTDWDSEAYLTVSGQNSNNSVSIKDEFLRAVENDADWHLTARKDGKI 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW  +    + +  P + F    N        G + +SN C+E        +
Sbjct: 428 MKTLKARDLWESISYAAWASADPGLHFNTTMNDWHTSPAAGPIRASNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S+NL+        + +       +R    VL+  + +      +  + ++ +R
Sbjct: 484 DTACNLASLNLMTFKDAATKRINIADYEHAVRLWTVVLEVSVMMAQFPSRRIAELSYEYR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK-- 712
            +GLG       L    IPY S EA  IA      ++  + + S E+A E G +  FK  
Sbjct: 544 TLGLGYANIGGLLMSSGIPYDSDEARAIAGSLTAIMTGISYATSAEMASELGTFPMFKPN 603

Query: 713 ----------GSLWDQGVF------PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
                           G         ++ + L+     +  +   ++  WD+     +  
Sbjct: 604 RENMLRVIRNHRRAAYGETSGYEGLAVNPVALIHSENPDQDLVAHAKAAWDKALALGEKH 663

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+   
Sbjct: 664 GYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRALG 723

Query: 815 LWDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HATAFEID 852
             +  +     Y    G++     I P  LK                 +AF+I 
Sbjct: 724 YSESQLAEIEAYAVGHGNLNQAPAINPSTLKAKGFTDEKVEAVNAALKSAFDIK 777



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     N L       + + +   +  G  ++     + ++   +   
Sbjct: 789 FLKGTLKVSDEQMADISFNLLDHLGFSKKDIEAANIHVCGAMTLEGAPFLKNEHLAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMANEATVEDCKNAYMLSWKLGLK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|150396451|ref|YP_001326918.1| ribonucleotide-diphosphate reductase subunit alpha [Sinorhizobium
           medicae WSM419]
 gi|150027966|gb|ABR60083.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Sinorhizobium medicae WSM419]
          Length = 1263

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 243/724 (33%), Gaps = 110/724 (15%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+               +++ +       ++   V      +++  
Sbjct: 47  FSQVAADILAQKYFRKA----------GVPAKLKRVEENDVPSFLWRSVPDADALKALPK 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +      D +   D              YF     +     +  +M    RVA      
Sbjct: 97  EEQYGSETDARQVFDRLAGTWAYWGWKGGYFDTEEDASAFRDELAYMLATQRVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           ++       T   S   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPGQGHFYVDPFTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ VR  G  + G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSYVRAEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTG------------------------------DDRR 474
           + A    ++  H D+EE+++ +                                  DD  
Sbjct: 276 RAAKMVVVDIDHPDIEEYINWKVKEEQKVAALVTGSKIVAKHLKAIMKACINCDGSDDAC 335

Query: 475 RTHDMNTA----------NWIPDLFMKRVTQ--------------NAGWTLFSPDEVS-- 508
                N A          + +P+ ++KRV Q              +  W   +   VS  
Sbjct: 336 FDPKQNPALKREIRAAKQSLVPENYVKRVIQFARQGYKDIEFKTYDTDWDSEAYLTVSGQ 395

Query: 509 --DLHDLYGKEFEIAYENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
             +       +F  A E         R + +V + + A  LW  +    + +  P + F 
Sbjct: 396 NSNNSVSIKDDFLRAVEADGDWHLTARKDGRVMKTLKARDLWESISHAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLA 622
              N        G + +SN C+E        +   CNL S+NL+      N + +     
Sbjct: 456 TTMNDWHTCPAAGPIRASNPCSEYMF----LDDTACNLASLNLMQFKDAANKRINIGDYE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
             +R    VL+  + +      +  + ++ +R +GLG       L    IPY SPE   I
Sbjct: 512 HAVRLWTVVLEVSVMMAQFPSREIAELSYAYRTLGLGYANIGGLLMSSGIPYDSPEGRAI 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG--------------- 727
           A      ++  A + S E++ + G +  F  +  +      +                  
Sbjct: 572 AGALTAIMTGVAYATSAEISAKLGPFPGFAPNRDNMLRVMRNHRRAAYGETAGYEGLSVN 631

Query: 728 ---LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
              L+     +  +   ++  WD+  +  +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVALVHGDCPDQDLIAHAKSAWDQAVELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIPDD 840
           P +  + + K    G F ++N  +   L+     +  +     Y    G++     I   
Sbjct: 692 PDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEMEAYAVGHGNLNQAPAINPT 751

Query: 841 LKKI 844
             K+
Sbjct: 752 TLKV 755



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 795 MSGDFTVVNSFLV----NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA 848
           + G   V +  L     N L+      + + +   +  G  ++     +  +   +   A
Sbjct: 790 LKGTLQVSDEQLASVDFNLLEHLGFSRKDIETANIHVCGAMTLEGAPFLKAEHLPVFDCA 849

Query: 849 F--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKT 899
                     +     I   +  Q +I  A S  + + +E + +     Y  +W + LK 
Sbjct: 850 NPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKA 909

Query: 900 TYYLRSRSA 908
               R  S 
Sbjct: 910 NALYRDGSK 918


>gi|312115570|ref|YP_004013166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220699|gb|ADP72067.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 1254

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 107/571 (18%), Positives = 200/571 (35%), Gaps = 93/571 (16%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               F         S   HPQ  +CF+ +V D   +  GI       A L KY  G G++
Sbjct: 175 YYVDFQTGELVRSASAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E F
Sbjct: 235 FSRLRSEGERLSG-GGKSSGLMSFLKIGDKAAGAIKSGGTTRRAAKMVIVDADHPDIEAF 293

Query: 463 LDLRKNTGDDR----------------------------------------RRTHDMNTA 482
           ++ +                                               +R      A
Sbjct: 294 INWKVLEEQKVAALVAGSKICAKHLAAIMRACVNCEGHGEDCFDPLKNVALKREIKAARA 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            ++PD +++RV                +  W   +   V   +       + ++      
Sbjct: 354 AFVPDAYIQRVIHFARQGFKSIEFPSFDTDWEGEAYRTVGGQNSNNTVRVDDSFLRAVEV 413

Query: 529 ADRGEI------KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                +      K  + + A AL  ++    + +  P I F    N        G + +S
Sbjct: 414 DSDWHLMSRTTDKAVKTLKARALMDQISEAAWASADPGIQFHTTINDWHTCPASGPIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDI 638
           N C+E        +   CNL S+NLL+           D +  A   R    VL+  + +
Sbjct: 474 NPCSEYMF----LDDTACNLASLNLLSFRPQGGEGRLVDAEAFAHACRLWTVVLEISVTM 529

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                ++  + ++  R +GLG       L +  + Y S E   +A      ++  + + S
Sbjct: 530 AQFPSKEIAQLSYDFRTLGLGYANLGGLLMVSGLGYDSDEGRALAAAISALMTGVSYATS 589

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDELAMNR 740
            E+A+E GA++ ++ +         +                     L   V  +  +  
Sbjct: 590 AEMAKELGAFAGYEPNASHMLRVMKNHRRAAYGRDNGYELLSTSPVPLKDGVCPQTDLVT 649

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798
            +R  WD++    +  G RN+    IAPT TI  +    +  I+P +  + + K +  G 
Sbjct: 650 VAREVWDDVISLGQMHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLSGGGY 709

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           F ++N  +   L+        + + + Y  G
Sbjct: 710 FKIINRAVPEALRNLRYTQTQIDAIIAYAVG 740



 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 11/112 (9%)

Query: 808 NELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EIDPMWLI 857
           + L         + +  +Y  G+  +     +  +   +   A          +     I
Sbjct: 809 DLLAAIGFPRAEIDAANEYVCGTMTLEGAPGLKPEHLPVFDCANPCGKKGKRALSWQSHI 868

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
              +  Q +I  A S  + +    S       Y  +W + LK     R  S 
Sbjct: 869 RMMAAAQPFISGAISKTINMPNSASIADCREAYMLSWKLALKANALYRDGSK 920


>gi|53803344|ref|YP_114954.1| ribonucleoside reductase [Methylococcus capsulatus str. Bath]
 gi|53757105|gb|AAU91396.1| ribonucleoside reductase precursor [Methylococcus capsulatus str.
           Bath]
          Length = 1317

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 131/354 (37%), Gaps = 46/354 (12%)

Query: 597 TAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              C LGS++L    +        F+ ++LA     AVR+LDNV+D     + + ++   
Sbjct: 671 YGCCCLGSLDLTRFVSRPFTPEAAFEAERLAEVATIAVRMLDNVLDTTYWPLARQRQEAQ 730

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
             R IGLG  G   AL +L + Y S  A ++A      +   A  AS  LA+E+GA+  F
Sbjct: 731 AKRRIGLGFTGLGDALAMLGLRYDSAAARDMAAGIARRLRDAAYLASTALAREKGAFPLF 790

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +   +                   LA    + L  + L+ R+   G+RNS+ ++IAPT T
Sbjct: 791 EAEPY-------------------LASPFVAGL-PEPLRARILESGIRNSHLLSIAPTGT 830

Query: 772 IANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           I+       S  I+P Y   Y++                +   R+   E     L     
Sbjct: 831 ISLAFADNTSNGIEPPYAWTYLRKKR-----------EPDGSTREFPVEDHAYRLYRATA 879

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
               +            TA +I  +  +   +  Q ++D + S  + +  +        +
Sbjct: 880 GDRPLP-------PAFVTALDISALDHMRMLAAVQPFVDASISKTVNVPADYPYADFQHL 932

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           Y +AW  GLK     R    T                   +DP+       +P+
Sbjct: 933 YLEAWKAGLKGLATYRPNPVTGAVLEATPTHGISRPEFDESDPDRRLRLDEVPA 986



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 124/298 (41%), Gaps = 28/298 (9%)

Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356
            L++L ++Y  H         +  F RVA  LA  E   ++    F++ L S  F+ +  
Sbjct: 7   SLEVLREKYARHGETC----AEEIFARVADALAAAEESPDEWRPLFFSALESG-FIPAGR 61

Query: 357 TLFNSGTRHP-QLSSCFLTTV-------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +GT     L +CF+  V        D   GI+ AL E A   +  GG+G D++ +R
Sbjct: 62  IMSAAGTGMQATLINCFVQPVGDSVSEETDGKPGIYTALAEAAETMRRGGGVGYDFSAIR 121

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +H T  ++ G + +++V + +   V   G R+GA    L   H D+ EF+  +  
Sbjct: 122 PRGARVHTTESRASGPVSYMRVFDRSCETVESAGSRRGAQMGILRCEHPDIFEFVRAKDR 181

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G+      + N +  + + FM+ V  +  W L    E S      G             
Sbjct: 182 PGE----LTNFNLSVALNEDFMRAVETDGPWELTHRAEPSPEQQCEGAYLRE-------- 229

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                + V+R + A  LW  ++   ++   P + F D  N  +   +   + ++N C 
Sbjct: 230 ---DGLWVYRSVPARELWELIMRSTYDHAEPGVLFIDRMNRENNLSYCERIEATNPCV 284


>gi|218529231|ref|YP_002420047.1| ribonucleotide-diphosphate reductase subunit alpha
           [Methylobacterium chloromethanicum CM4]
 gi|218521534|gb|ACK82119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylobacterium chloromethanicum CM4]
          Length = 1243

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 131/746 (17%), Positives = 233/746 (31%), Gaps = 124/746 (16%)

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           +++V A  L +K  R+                ++ +       ++   V        + +
Sbjct: 47  WSQVAADVLAQKYFRKA----------GVPARLKKVEENSVPSFLWRAVPDEAALAELPE 96

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM----RVAMGLALK 331
            +            D              YF     +   M +  FM     VA      
Sbjct: 97  EERFVSEISATQVFDRLAGCWTYWGWKGGYFSSEEDAAAFMDELRFMLARQMVAPNSPQW 156

Query: 332 ETEKEKRAVEFYNLLSSFHFM---CSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFG 385
                  A           +        T   +   HPQ  +CF+ +V D   +  GI  
Sbjct: 157 FNTGLHWAYGIDGPSQGHFYCDPKTGVLTKSATAYEHPQPHACFIQSVQDDLVNEGGIMD 216

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
                A L KY  G G++++ +RG      G  GKS G++ FLK+ +  A A+  G   R
Sbjct: 217 LWVREARLFKYGSGTGSNFSMLRGENER-LGGGGKSSGLMSFLKIGDRAAGAIKSGGTTR 275

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDR------------------------------- 473
           + A    ++  H DVE F+D +                                      
Sbjct: 276 RAAKMVIVDIDHPDVENFIDWKVKEEQKVAALVTGSKVVSKHLTAVMKACTQCEAEGDAC 335

Query: 474 ---------RRTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDL 510
                    +R         +PD ++KRV Q              +  W   +   V+  
Sbjct: 336 FDPERNPALKREIKAARKAMVPDAYIKRVVQFARQGFTKIDFPVYDTDWDSEAYLTVAGQ 395

Query: 511 HDLYGKEF-EIAYENYERQAD-----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
           +        +      E         R   KV +   A  LW K+    + +  P + F 
Sbjct: 396 NSNNSVSLTDEFLRAVEADGPWSLTSRTTGKVVKTPQARDLWEKIGEAAWASADPGLHFN 455

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLA 622
              N        G + +SN C+E        +   CNL S NLL  +      FD +   
Sbjct: 456 TTMNDWHTCPEGGRIRASNPCSEYMF----LDDTACNLASANLLTMYDRQSKHFDVEAFE 511

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682
              R    VL+  + +     ++  + ++ +R +GLG       L  + +PY S +   +
Sbjct: 512 HLNRLWTVVLEISVMMAQFPSKEIAELSYKYRTLGLGYANIGGLLMTMGLPYDSDKGRAL 571

Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI---------------- 726
           A      ++  A + S E+A E G + ++  +         +                  
Sbjct: 572 AGALTAIMTGVAYATSAEMAAELGTFEAYPDNAAHMLRVIRNHRRAAHGEVAGYEGLNVS 631

Query: 727 --GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSID 783
              L      +  +   +R  WD      +  G RN+    IAPT TI  +    +  I+
Sbjct: 632 PVPLDHANIPQADIGAHARAAWDRALSLGEQHGYRNAQATVIAPTGTIGLVMDCDTTGIE 691

Query: 784 PSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-------------HDG 829
           P +  + + K    G F ++N    + L+     +  +     Y             + G
Sbjct: 692 PDFALVKFKKLAGGGYFKIINQAAPDALRALGYREAEIAEIEAYAVGHGSMGQAPAINPG 751

Query: 830 SIGNIERIPDDLKKI---HATAFEID 852
           S+       D +  +     +AF+I 
Sbjct: 752 SLRAKGFTDDKIAAVEAGLKSAFDIK 777



 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     +  +   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 831 TLEGAPFLKPEHYAVFDCANPCGRTGKRYLSVESHIHMMAAAQPFISGAISKTINMPNDA 890

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W + LK     R  S 
Sbjct: 891 TVEDCKAAYLLSWRLALKANALYRDGSK 918


>gi|90417656|ref|ZP_01225568.1| ribonucleotide reductase domain protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337328|gb|EAS50979.1| ribonucleotide reductase domain protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1294

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 114/593 (19%), Positives = 208/593 (35%), Gaps = 100/593 (16%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G++
Sbjct: 177 YYVDYRTGELTRSTSSYEHPQPHACFIQSVADDLVNDGGIMDLWVREARLFKYGSGTGSN 236

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 237 FSYLRGEGETLAG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDIDHPDIENY 295

Query: 463 LDLRKNTGD----------------------------------DRRRTHDMNTAN----- 483
           +  +    +                                  +  +   +  A      
Sbjct: 296 ISWKVREEEKVAALVTGSKTVSKHLKAILSACVNCEGPDGDCFEPMKNPALKRAVKDAKR 355

Query: 484 -WIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             +P+ ++KRV Q              +  W   +   VS  +       +  +     +
Sbjct: 356 AQVPENYVKRVIQFARQGYTDIEFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVEE 415

Query: 529 ------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R + KV + + A  LW ++    + +  P + +    N        G + +S
Sbjct: 416 DGTWDLIRRTDGKVAKTLKARELWDQIGYAAWASADPGLHYNTTMNDWHTCPAAGPIRAS 475

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--------NQFDYDKLASTIRTAVRVLDN 634
           N C+E        +   CNL S+NL+              +FD D      R    VL+ 
Sbjct: 476 NPCSEYMF----LDDTACNLASLNLIQFREEGLDGPEGIKRFDTDAFEHATRLWTVVLEI 531

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +     ++  + ++ +R +GLG       L    IPY S E   I       ++  A
Sbjct: 532 SVMMAQFPSKEIARLSYDYRTLGLGFANIGGLLMTAGIPYDSDEGRAICGAIAALMTGVA 591

Query: 695 ISASVELAQERGAYSSFKGS------------LWDQGVFP------IDSIGLLAEVRDEL 736
              S E+A   GA+  ++ +                G+        +D + L      + 
Sbjct: 592 YKTSAEMAGHLGAFPDYERNSEHMLRVMRNHGRAAHGIANGYEGLSVDPVPLDHASLPDK 651

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794
            ++  ++  W +  +  K  G RN+    IAPT TI  +    +  I+P +  + + K  
Sbjct: 652 RLSARAKTAWTDAVELGKKNGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLA 711

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI 844
             G F ++N      L+     +  +     Y    G++     I P  LK  
Sbjct: 712 GGGYFKIINRAAPEALRSLGYTEAQIAEMEAYAVGHGNLNQAPAINPGSLKAK 764



 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 54/170 (31%), Gaps = 12/170 (7%)

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHA 846
            ++K  +      +  F    L       + + +   +  G  ++     +  +   +  
Sbjct: 796 AFMKETLGVSDEQLADFAFELLPFLGFSRKDIDAANVHVCGAMTLEGAPHLKPEHLAVFD 855

Query: 847 TA--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
            A          +     I   +  Q +I  A S  + + +E + +  +  Y  +W + L
Sbjct: 856 CATPCGRIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCNAAYMLSWKLAL 915

Query: 898 KTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           K     R  S  +    ++L   + + +   V    ++  S   P+    
Sbjct: 916 KANALYRDGSKLSQPLNASLIADEDEEDEDAVEMATAALASATKPAQAAE 965


>gi|307565852|ref|ZP_07628313.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Prevotella amnii CRIS
           21A-A]
 gi|307345476|gb|EFN90852.1| putative ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent [Prevotella amnii CRIS
           21A-A]
          Length = 866

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 129/674 (19%), Positives = 252/674 (37%), Gaps = 102/674 (15%)

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKE 336
             L + L Y  +   + +  ++  D Y L  + G+  E  P+    R+A  +A  E    
Sbjct: 11  EALESALNYFGN---DEVAAKVWIDNYALKDSLGNLYEKSPEDMHWRIANEVARIEKRYV 67

Query: 337 K-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG---IFGALQ 388
                 +  E  +         S+     +      L++CF+    +D++    I    +
Sbjct: 68  NPINAAKVFELLDHFRYIVPSGSSMVGIGNKYLLSSLANCFVIGSAEDVHSYGTIMHIDE 127

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E   L K SG +G+D + +R  G+ I  +   S G++PF++   ++   V QGG   GA+
Sbjct: 128 EQVQLMKCSGIVGHDLSYIRPKGSSIKDSKLISTGILPFMERYFNSMREVVQGGHS-GAL 186

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              +   H DVE  +D+      D       N +  I D FMK V     +    P    
Sbjct: 187 MLSVNIKHPDVESLIDVNIKKAKDN----SANISVKITDEFMKAVINEESYIQQFP---- 238

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                                   +    ++I A  L+ K+L   +    P + F D   
Sbjct: 239 --------------------IISTKPIFTKEIYAKHLFEKILYKAYHDAEPTVLFWDNIL 278

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLAS 623
             S       +    +               C+L S+NL ++         +FD+DK A 
Sbjct: 279 KDSLSDSYADLGFQTISITPYYKIPLSPYDSCHLLSLNLYSYVIDPFTKEARFDFDKFAE 338

Query: 624 TIRTAVRVLDNVIDIN------------------------CHTIEKAKKSNHTHRAIGLG 659
            ++ A RVLD+++D+                          +  +K K+ +   R IG+G
Sbjct: 339 HVQIAQRVLDDIVDLELEKIDLILSNIEKASVSKEIKETEYNLWKKIKEKSAMGRRIGIG 398

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
           +         + + Y + E+++ + +  + ++ +A  +SV +A+ERG+++ +  S     
Sbjct: 399 VTAEGDMFAAMGLCYGTQESIDFSVKVHKVMALNAYRSSVNMAKERGSFAIYDASR---- 454

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779
                        ++   + R  R   ++L   ++  G RN +C+AIA   T++ +   +
Sbjct: 455 ------------EKNNPFILRLKRED-EQLFNDMERYGRRNISCLAIASIKTVSLMTQTT 501

Query: 780 QSIDPSYQNLYVKSNMSGDF-------TVVNSFLVNELKQRDLWDEAMISDLKYHD---- 828
             I+P Y  +Y   +    +       T +   L N  ++  ++    ++ +K +     
Sbjct: 502 SGIEPKYIPVYKHHDKINSYNKNTNANTDLAYELDNSFREHIIYHSKFLTWMKVNGIEPT 561

Query: 829 --GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-L 885
              S   I+ +         TA       +I      +KW DQ+ S+ +       +  +
Sbjct: 562 KKYSQEEIDDLIKRSPYYMTTANYESLSMIIHMQGAIEKWTDQSVSVTINTPSSIDEDSI 621

Query: 886 DFIYRQAWLMGLKT 899
             +Y +AW  G K 
Sbjct: 622 SKLYFEAWRCGCKG 635


>gi|75474388|sp|Q9XD73|NRDJ_STRCT RecName: Full=Vitamin B12-dependent ribonucleotide reductase;
           AltName: Full=Ribonucleoside-diphosphate reductase nrdJ
 gi|5006433|gb|AAD37499.1|AF111267_1 regulatory protein SCTI [Streptomyces cattleya]
          Length = 599

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 127/370 (34%), Gaps = 25/370 (6%)

Query: 593 SSEETAVCNLGSINLLAHFA-------------NNQFDYDKLASTIRTAVRVLDNVIDIN 639
              + + CNL S+NL+                 N   D ++ A  +   +  +D  I   
Sbjct: 1   MHLDNSSCNLASLNLMKFLRDDTASDGASGAGGNMSLDAERFAKVVELVITAMDISICFA 60

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               EK  ++    R +G+G     + L      Y S     +A      ++  +   S 
Sbjct: 61  DFPTEKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSA 120

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKT 755
           ELA   G Y  +  +                  +    ++      +   W ++ +  + 
Sbjct: 121 ELAAVVGPYEGYARNADAHKRVMRQHADANTAAQRMDDLDTPVWAAATEAWQDVLRLGEQ 180

Query: 756 IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
              RN+    +APT TI  +    +  ++P    + + K    G   +VN+ +   LK+ 
Sbjct: 181 NRFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGGSMQIVNNTVPKALKRL 240

Query: 814 DLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWID 868
               E + + +      G++ +   +  +  ++   A     I PM  +   +  Q ++ 
Sbjct: 241 GYQPEQVEAVVAHIAEHGNVIDAPGLKPEHYEVFDCAMGERAISPMGHVRMMAAAQPFLS 300

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
            A S  + + E  + ++++ IY + W +GLK     R         S  K  + K  A  
Sbjct: 301 GAISKTVNMPESATVEEIEEIYYEGWKLGLKALAIYRDNCKVGQPLSAKKKEEAKTEAPA 360

Query: 928 VTDPNSSTHS 937
             +       
Sbjct: 361 EVEKVVEYRP 370


>gi|182678921|ref|YP_001833067.1| ribonucleotide-diphosphate reductase subunit alpha [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634804|gb|ACB95578.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1236

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 123/604 (20%), Positives = 213/604 (35%), Gaps = 113/604 (18%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
               S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG    
Sbjct: 185 VQSQSAYEHPQPHACFIQSVQDDLVNEGGIMDLWVREARLFKYGSGTGSNFSKLRGENEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT--- 469
           + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+++D +      
Sbjct: 245 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEDYIDWKMREEQK 303

Query: 470 ---------------------------GDDRRRTHDMNTANW----------IPDLFMKR 492
                                        D     + N A            +PD  +K+
Sbjct: 304 VAALVTGSKTLKKALKAIVRACVNCEGPGDDCFNPEKNPALKREIKLARRAFVPDAAIKK 363

Query: 493 VTQ--------------NAGWTLFSPDEV----SDLHDLYGKEFEIAYENYERQA--DRG 532
             Q                 W   +   V    S+       +F  A E         R 
Sbjct: 364 ALQLVRQGETDIDVEAFTTDWDSEAYLTVSGQNSNNSVRVTDDFLRAVEQDGDWNLTRRL 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + K  + + A  LW K+    + +  P + F    N        G + +SN C+E     
Sbjct: 424 DGKPHKTLPARELWEKIGRAAWASADPGLQFHTTINDWHTCPADGPIVASNPCSEYMF-- 481

Query: 593 SSEETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              +   CNL S+NLL   +     FD +     +R    VL+  + +      +    +
Sbjct: 482 --LDDTACNLASLNLLQFRNTQTKIFDVEAYEHAVRLWTIVLEISVMMAQFPSREIALLS 539

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  R +GLG       L    I Y S +   I       ++  A + S E+A + G +S 
Sbjct: 540 YEFRTLGLGFANIGGLLMSSGIAYDSAQGRAICGALSAIMTGIAYATSAEMAGQLGPFSG 599

Query: 711 FKGS------------LWDQGVF-----------PIDSIGLLAEV-RDELAMNRTSRLPW 746
           ++ +               +G             P+D + L A       A+ R + + W
Sbjct: 600 YQRNATGMLRVMRNHARAARGESTGYESLDILPVPLDHVALDANPALGAPALRRHAVMAW 659

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNS 804
           D+     +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++N 
Sbjct: 660 DKAVALGERHGFRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINR 719

Query: 805 FLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI-----------PDDLKKI---HATA 848
            +   L+     +  +     Y  G  S+ N   I           P+ +  +    A+A
Sbjct: 720 AVPEGLRALGYPESQIAEIEAYAVGHASLSNAPGINHASLTARGFTPEKIADVEAALASA 779

Query: 849 FEID 852
           F+I 
Sbjct: 780 FDIK 783



 Score = 94.5 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 27/213 (12%)

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQ--NLYVKSNMSGDFT--VVNSFLVNE--- 809
           G+ +++  A   T     I  V  ++  ++    ++ K  +  DF   V+N         
Sbjct: 753 GINHASLTARGFTPE--KIADVEAALASAFDIKFVFNKWTLGADFLTEVLNIPAEKLDEP 810

Query: 810 ----LKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA---------FEIDPM 854
               L       + + +   +  G  +I     +  +   +   A         F +   
Sbjct: 811 NFDLLSALGFSRQEIEAANIHVCGAMTIEGAPYLKLEHYAVFDCASICGRTGKRF-LSVE 869

Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVE 912
             I   +  Q +I  A S  + + +E + +     Y  +W +GLK     R  S  +   
Sbjct: 870 SHIRMMAASQPFISGAISKTINMPNEATIEDCKNAYLLSWRLGLKANALYRDGSKLSQPL 929

Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            S L   D       +    ++   +       
Sbjct: 930 NSQLLQDDEDETEEALDALVAAPAPVRSTIVAE 962


>gi|326315454|ref|YP_004233126.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372290|gb|ADX44559.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1226

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 134/362 (37%), Gaps = 46/362 (12%)

Query: 597  TAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
               C+LG I L     +         FD++  A+++ T VR LDNV+D+    + + +  
Sbjct: 698  YGCCDLGPIILPRFVRHPFGFAGEPAFDFEAFAASVATQVRALDNVLDVTFWPLPQQRAE 757

Query: 650  NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
            +   R IG+G  G  + L +L + Y +     +A    E +   A +ASVELA+E+G + 
Sbjct: 758  SAAKRRIGVGFTGLGNTLAMLRLRYDTDAGRAMAMRIAECMRDAAYAASVELAKEKGVFP 817

Query: 710  SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             F                   +    L+    +      L++ ++T G+RNS+ ++IAPT
Sbjct: 818  KF-------------------DAAGYLSPGTFASRLPAALQEAIRTHGIRNSHLLSIAPT 858

Query: 770  ATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
             T++       S  I+P +   Y +     D +  + + V +               +  
Sbjct: 859  GTVSLAFADNASNGIEPPFSWTYTRRKREADGS-TSEYAVED---------HAWRLYRAL 908

Query: 828  DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886
             G +       D L     +A ++     I      Q +ID A S  + +  +   +   
Sbjct: 909  GGDV-------DALPDYFVSALQMPAAGHIAMMEAVQPFIDTAISKTVNVPVDYPYEDFK 961

Query: 887  FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
             +Y  AW   LK     R  +                 A      ++S  + G     ++
Sbjct: 962  NLYLHAWRARLKGLATYRPNAILGAVLEAPAAAPETGAATAAAAHDASESAEGPAVQASA 1021

Query: 947  DT 948
              
Sbjct: 1022 MP 1023



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 29/302 (9%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFM 352
            + L +L ++Y         E     + RVA  LA  E    +E     F   L +    
Sbjct: 21  PISLDVLREKYLKPGEAD-AET---LYRRVARALASVEAPEVREAIEARFLANLRAGAIG 76

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G+        + AL+E A   +  GG+G D+
Sbjct: 77  AGRIMSAAGTDIQATLINCFVQPVGDCIQGMDEGGYPGIYEALREAAETMRRGGGVGYDF 136

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 137 SRIRPRGAEVKGTASMASGPCSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLDFIT 196

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD F++ V  +A W L  P          G         
Sbjct: 197 AKRTPG----RWNNFNVSVGVPDAFVQAVLDDAPWELVHPAR-------PGAALREEGAR 245

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 246 QRADGQ----WVYRTLPARELWDTIMRSAYDFAEPGILFLDRVNTDNNLAYCESIAATNP 301

Query: 585 CT 586
           C 
Sbjct: 302 CV 303


>gi|154253737|ref|YP_001414561.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum
           lavamentivorans DS-1]
 gi|154157687|gb|ABS64904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Parvibaculum lavamentivorans DS-1]
          Length = 1244

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 107/576 (18%), Positives = 209/576 (36%), Gaps = 93/576 (16%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
               +   +PQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG    
Sbjct: 185 ARTATAYEYPQPHACFIQSVNDDLVNENGIMDLWVREARLFKYGSGTGSNFSDLRGEDEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472
           + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +      
Sbjct: 245 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDVEDFINWKVKEEQK 303

Query: 473 ----------RRRTHDMNTANWI------------------------------PDLFMKR 492
                      ++  +      +                              P+ +++R
Sbjct: 304 VAALVTGSKINQKHLNAIMRACVNCEADGDACFDPKKNPALKREVLAARKAHVPENYVQR 363

Query: 493 VTQ--------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYENYERQADRGE- 533
           V Q              +  W   +   VS  +         +F  A E     + +   
Sbjct: 364 VIQFAKQGYDEIDFRVYDTDWDSEAYLTVSGQNSNNTVRVTDDFLRAVEEDAEWSLKSRL 423

Query: 534 -IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
             +  + + A  LW ++    + +  P I +    N        G + +SN C+E     
Sbjct: 424 TGEATKTLPARELWEQVGHAAWASADPGIQYHTTINDWHTCPASGPIRASNPCSEYMF-- 481

Query: 593 SSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651
              +   CNL SINL+     + +FD +     ++    VL+  + +      +  + + 
Sbjct: 482 --LDDTACNLASINLMQFRDADGRFDVEAFEHAVKLLTIVLEISVLMAQFPSREIAERSF 539

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711
            +R +GLG       L    + Y S EA  +A      ++  + + S ++A+E GA+  +
Sbjct: 540 RYRTLGLGFANIGGLLMSCGLAYDSAEARALAGAISAIMTGVSYATSAQMAKELGAFEGY 599

Query: 712 KGSLWDQGVFPIDS------------------IGLLAEVRDELAMNRTSRLPWDELKKRV 753
             +         +                   + L A    +  +   +R  WD      
Sbjct: 600 AENSAHMLRVMRNHARAAHGYNGGYEDLSVYPLALDAANCPQADLVDHARASWDLAVSMG 659

Query: 754 KTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELK 811
           +  G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+
Sbjct: 660 ERYGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPQALR 719

Query: 812 QRDLWDEAMISDLKYH--DGSIGNIERIP-DDLKKI 844
                  A+   + Y    G++ N   +  + L+++
Sbjct: 720 TLGYDAAAIERIVNYAVGFGTLANAPGVSHERLREL 755



 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880
           ++     + D+   +   A          +     I   +  Q +I  A S  + +    
Sbjct: 830 TLEGAPGLKDEHLPVFDCANPCGRIGKRYLSVESHIRMMAAAQPFISGAISKTINMANAA 889

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W +GLK     R  S 
Sbjct: 890 TVEDCKESYMLSWKLGLKANALYRDGSK 917


>gi|328543988|ref|YP_004304097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [polymorphum gilvum SL003B-26A1]
 gi|326413732|gb|ADZ70795.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Polymorphum gilvum SL003B-26A1]
          Length = 1004

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 115/578 (19%), Positives = 197/578 (34%), Gaps = 92/578 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD---LYGIFGALQENAMLAKYSGGLGND 403
                         S    PQ+ +  + +V DD     GI       A L KY  G G +
Sbjct: 175 WHVDLASGEAVASTSAYERPQVHASIILSVKDDLVGDNGIMDLWVREARLFKYGSGTGTN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV-CAYLETWHIDVEEF 462
           ++ +RG G  +    GKS G++ FLKV +  A ++  GG  + A     ++  H D+E+F
Sbjct: 235 FSAIRGAGEPL-DHGGKSAGLLSFLKVGDAAAGSLRSGGTTRAAAKMVVVDIDHPDIEDF 293

Query: 463 LDLRKNTGD--------------------------DRRRTHDMNT------------ANW 484
           +D +    +                          +  R  D               A  
Sbjct: 294 IDWKVKEEEKVAAIVAGSKMAARRLSRILEIVDAVEHHRYRDNAYKRELDRAIEEARAAL 353

Query: 485 IPDLFMKRVTQ--------------NAGWTLFSPDEVS----DLHDLYGKEFEIAYEN-- 524
           IPD +++RV                +  W   +   VS    +        F  A E   
Sbjct: 354 IPDGYIERVIHFAEQGHGGLEFRTYDVDWDSDAYRTVSGQNANNSVRVPDAFLEAVERGA 413

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
             R   R + +  R++ A ALW K+    + +  P + F    N        G ++ SN 
Sbjct: 414 PWRLVQRTDPRKGREVDARALWHKVAGAAWASADPGVQFDTTINAWHTCPRSGRINGSNS 473

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFD-YDKLASTIRTAVRVLDNVIDINCHTI 643
           C+E        +   C L S+NL+A    +     D     +R     LD  I +  +  
Sbjct: 474 CSEFMF----LDDTACPLASLNLMAFRDADGGFRVDDFRHAVRLWTLSLDISISMAQYPS 529

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
               +    +R IGLG       L  L IPY S             ++      S ELA 
Sbjct: 530 RATARRTARYRPIGLGYANLGGLLMSLGIPYDSDAGRAYCAAVTALLTGWTYRTSAELAA 589

Query: 704 ERGAYSSFKGS------------LWDQGVFPIDSIG--------LLAEVRDELAMNRTSR 743
           E+G +  ++ +                G   + +          L A    +  ++  + 
Sbjct: 590 EQGPFEGYRANAAHMLRVIRNHRRAAHGTTQVSAYEGLATPPVPLGASACPDAPLHAAAV 649

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTV 801
             WD+     +  G RN+    IAPT TI  +    +  I+P +  + + K    G F +
Sbjct: 650 EAWDQALALGERHGYRNAQASVIAPTGTIGLVMDCATTGIEPDFALVKFKKLAGGGFFKI 709

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           +N  +   L++    +  +   + +    GS+     +
Sbjct: 710 INGMVPTALRRLGYAEHEVRDIVAHAVGHGSLELAPFV 747



 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 12/146 (8%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAFE--------IDPMWLI 857
           + L+Q       + +   +  G  S+     +  +   +   A          +     I
Sbjct: 806 DLLRQLGFTRAQIEAANAHVCGTMSLEGAPHLRLEHYPVFDCANPCGSKGTRFLPVDSHI 865

Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKST 915
              +  Q ++  A S  + +    S +     Y  +W +GLK     R  S  +      
Sbjct: 866 RMMAAAQPFVSGAISKTVNMPNKASVEDCKTAYGLSWRLGLKANALYRDGSKLSQPLNLR 925

Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIP 941
           L+  D          P   +     P
Sbjct: 926 LREDDDAQEEDAAEGPADESPPFDAP 951


>gi|121606643|ref|YP_983972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Polaromonas naphthalenivorans CJ2]
 gi|120595612|gb|ABM39051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Polaromonas naphthalenivorans CJ2]
          Length = 1184

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 135/357 (37%), Gaps = 46/357 (12%)

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKL 621
             + Q     V  + L T             C+LG I L     +         FD++  
Sbjct: 652 YDTTQPDGNTVIFNGLVTGQCGEQPLPPYGCCDLGPIILTRFVRHPFGFGGEPEFDFEAF 711

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +++ T VR LDNV+++    + + +  +   R IG+G  G  +AL +L + Y +PE  +
Sbjct: 712 EASVATQVRALDNVLEVTFWPLPQQQTESSAKRRIGVGFTGLGNALAMLRLRYDAPEGRD 771

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
           +A      +   A +AS ELA+E+GA+  F  +                     LA    
Sbjct: 772 MAARIAVRMRDAAYAASSELAKEKGAFPKFDAN-------------------GYLATGTF 812

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDF 799
           +      L++ ++  G+RNS+ ++IAPT T++       S  I+P++  +Y +     D 
Sbjct: 813 ASRLPAALQQAIRAHGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWMYKRKKRESDG 872

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
           +    + V +               +   G +  +            +A ++     I  
Sbjct: 873 STT-EYAVED---------HAWRLYRELGGDVNKLPG-------YFVSALDMSATSHIAM 915

Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915
               Q +ID A S  + +  +        +Y QAW  GLK     R  +       T
Sbjct: 916 MQAVQPFIDTAISKTVNVPADYPYGDFKSLYHQAWRAGLKGLATYRPNAILGAVLET 972



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 116/298 (38%), Gaps = 29/298 (9%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356
            +L ++Y            +  + RVA  LA  E    +EK    F   L +        
Sbjct: 21  DVLKEKYLKPGESGV----EDVYRRVARALASVELPAEREKHEALFLENLHAGAIGAGRI 76

Query: 357 TLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWTPVR 408
                      L +CF+  V D           GI+ AL+E A   +  GG+G D++ +R
Sbjct: 77  MSAAGTAIQATLINCFVQPVGDCIQGVDDGGYPGIYEALREAAETMRRGGGVGYDFSRIR 136

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +  T   + G   ++ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 137 PRGAEVKATASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVHEFITAKRT 196

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + D FM+ +  +  W L    +      +    F+ A       
Sbjct: 197 PG----RWNNFNVSVGMSDGFMQALNDDQPWELVHKAK-PGAALMAKGAFQRA------- 244

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                + V++ ++A  +W  ++   ++   P I F D  N  +  ++   + ++N C 
Sbjct: 245 ---DGLWVYQTVAAREMWDTVMRSAYDFAEPGILFLDNINTDNNLRYCEAIAATNPCV 299


>gi|120609366|ref|YP_969044.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidovorax citrulli AAC00-1]
 gi|120587830|gb|ABM31270.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Acidovorax citrulli AAC00-1]
          Length = 1226

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 135/384 (35%), Gaps = 46/384 (11%)

Query: 575  HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRT 627
                  ++ LC              C+LG I L     +         FD+D  A+++ T
Sbjct: 676  DCHAFDANGLCVHNCGEQPLPSYGCCDLGPIILPRFVRHPFGFAGEPAFDFDAFAASVAT 735

Query: 628  AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
             VR LDNV+D+    + + +  +   R IG+G  G  + L +L + Y +     +A    
Sbjct: 736  QVRALDNVLDVTFWPLPQQRAESAAKRRIGVGFTGLGNTLAMLRLRYDTDAGRAMAMRIA 795

Query: 688  EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            E +   A +ASVELA+E+G +  F                   +    LA    +     
Sbjct: 796  ECMRDAAYAASVELAKEKGVFPKF-------------------DAAGYLAPGTFASRLPA 836

Query: 748  ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
             L++ ++T G+RNS+ ++IAPT T++       S  I+P +   Y +     D +  + +
Sbjct: 837  ALQEAIRTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-TSEY 895

Query: 806  LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
             V +                   G +  +            +A ++     I      Q 
Sbjct: 896  AVED---------HAWRLYGALGGDVNALP-------DYFVSALQMPAAGHIAMMEAVQP 939

Query: 866  WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924
            +ID A S  + +  +   +    +Y  AW   LK     R  +                 
Sbjct: 940  FIDTAISKTVNMPADYPYEDFKNLYLHAWRARLKGLATYRPNAILGAVLEAPAAAPEAGT 999

Query: 925  AVPVTDPNSSTHSLGIPSSCTSDT 948
            A      ++S  +       ++  
Sbjct: 1000 ATTSAAHDASESADRPAVQSSAMP 1023



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 29/302 (9%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFM 352
            + L +L ++Y         E     + RVA  LA  E    +E     F   L +    
Sbjct: 21  PISLDVLREKYLKPGEAD-AET---LYRRVARALASVEAPEVREAIEARFLANLRAGAIG 76

Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDW 404
                          L +CF+  V D + G+        + AL+E A   +  GG+G D+
Sbjct: 77  AGRIMSAAGTAIQATLINCFVQPVGDCIQGMDEGGYPGIYEALREAAETMRRGGGVGYDF 136

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA + GT   + G   ++ V + +   V   G R+GA    L   H DV +F+ 
Sbjct: 137 SRIRPRGAEVKGTASMASGPCSYINVFDQSCATVESAGARRGAQMGVLRIDHPDVLDFIT 196

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            ++  G    R ++ N +  +PD F++ V  +A W L  P          G         
Sbjct: 197 AKRTPG----RWNNFNVSVGVPDAFVQAVLDDAPWELVHPAR-------PGAALREEGAR 245

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                      V+R + A  LW  ++   ++   P I F D  N  +   +   + ++N 
Sbjct: 246 QRADGQ----WVYRTLPARELWDTIMRSAYDFAEPGILFLDRVNTDNNLAYCESIAATNP 301

Query: 585 CT 586
           C 
Sbjct: 302 CV 303


>gi|323513934|gb|ADX89383.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2001_A]
          Length = 1076

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 171/443 (38%), Gaps = 25/443 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++  +G  + F++ +L  + E A +    V    ++    K + D  S  D++ ALI S
Sbjct: 5   TVIKSNGQEVPFDASKLNRMAEWADNL--GVGWSSLVLNAIKKVSDKCSTLDIQNALIDS 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                  +  +  + AR  L  + +       ++P          LY  Y    I    K
Sbjct: 63  CAEKA--DKAHLAMAARLFLGTMYKNAHGGFEERP---------HLYDFYNNMLILGLWK 111

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                 S    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VA
Sbjct: 112 E----MSYDATELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVA 167

Query: 326 MGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           M +     E  +    V++Y  LS       TP L    ++   L+SC +    D    +
Sbjct: 168 MDIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSL 227

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+         + G+G      R +   +     K  G +P+ +    +  A  Q  +
Sbjct: 228 EAAIHNAYKQTVSNAGIGISLNC-RSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQEVR 286

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
             G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S
Sbjct: 287 G-GSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMS 345

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                +++  Y + ++   +        G  K ++ I AV + +  L    +TG  + T+
Sbjct: 346 QLHAPEVYKAYHENYDSLKQTLNDYILSG--KPYKTIKAVEVLKLYLKQRQDTGRMYSTW 403

Query: 564 KDPCNIRSPQQHVGVVHSSNLCT 586
            D  N  +P      ++SSNLC 
Sbjct: 404 LDEANYHTPF--KEPIYSSNLCV 424



 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 125/327 (38%), Gaps = 44/327 (13%)

Query: 604  SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            ++  L+     +   ++        +  +DNVI +  +       S    R++G+G+   
Sbjct: 780  ALCFLSCIVAGRVSEEEYEDVAYYTLLGVDNVISLMDYAFPNLSYSAQNRRSVGIGITNL 839

Query: 664  QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              AL    + Y + E         E  S++   AS+ LA+E+G       + + +G  PI
Sbjct: 840  AHALASKGLSYKTLEGKNYMHRLAEMHSYYLHKASLRLAKEKGVAGWIGKTKYPEGWLPI 899

Query: 724  DSIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D+     +        +  R  W+ L+K  +   G+RNS   A  P  + + +   + S+
Sbjct: 900  DTYNKNVDRV----HTQKLRFDWESLRKDIISAGGIRNSVLEATPPAESSSLVSSTTNSL 955

Query: 783  DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
             P  Q+  +K   SG   V                             +     I ++LK
Sbjct: 956  YPIRQDYVIK--KSGTTKV-----------------------------VFAAPDI-ENLK 983

Query: 843  KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-------LDEPSGKKLDFIYRQAWLM 895
              +  A+EI    +I+  +  QK+  Q  S +L+        ++    +L   +  A  M
Sbjct: 984  GKYEYAYEIPTKDMIDCYAIFQKFHGQGISADLWKDYSKYENEKIPMSELLNDFYYATKM 1043

Query: 896  GLKTTYYLRSRSATSVEKSTLKGVDGK 922
            G+K+ YY  S+S    E ST++  +  
Sbjct: 1044 GMKSWYYQNSKSGIKQEGSTIEPDESS 1070


>gi|323512792|gb|ADX88246.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_D]
 gi|323513020|gb|ADX88473.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_C]
 gi|323513703|gb|ADX89153.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2005_A]
          Length = 1076

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 171/443 (38%), Gaps = 25/443 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++  +G  + F++ +L  + E A +    V    ++    K + D  S  D++ ALI S
Sbjct: 5   TVIKSNGQEVPFDASKLNRMAEWADNL--GVGWSSLVLNAIKKVSDKCSTLDIQNALIDS 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                  +  +  + AR  L  + +       ++P          LY  Y    I    K
Sbjct: 63  CAEKA--DKAHLAMAARLFLGTMYKNAHGGFEERP---------HLYDFYNNMLILGLWK 111

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                 S    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VA
Sbjct: 112 E----MSYDATELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVA 167

Query: 326 MGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           M +     E  +    V++Y  LS       TP L    ++   L+SC +    D    +
Sbjct: 168 MDIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSL 227

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+         + G+G      R +   +     K  G +P+ +    +  A  Q  +
Sbjct: 228 EAAIHNAYKQTVSNAGIGISLNC-RSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQEVR 286

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
             G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S
Sbjct: 287 G-GSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMS 345

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                +++  Y + ++   +        G  K ++ I AV + +  L    +TG  + T+
Sbjct: 346 QLHAPEVYKAYHENYDSLKQTLNDYILSG--KPYKTIKAVEVLKLYLKQRQDTGRMYSTW 403

Query: 564 KDPCNIRSPQQHVGVVHSSNLCT 586
            D  N  +P      ++SSNLC 
Sbjct: 404 LDEANYHTPF--KEPIYSSNLCV 424



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 124/327 (37%), Gaps = 44/327 (13%)

Query: 604  SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            ++  L+     +   ++        +  +DNVI +  +       S    R++G+G+   
Sbjct: 780  ALCFLSCIVAGRVSEEEYEDVAYYTLLGVDNVISLMDYAFPNLSYSAQNRRSVGIGITNL 839

Query: 664  QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
               L    + Y + E         E  S++   AS+ LA+E+G       + + +G  PI
Sbjct: 840  AHTLASKGLSYKTLEGKNYMHRLAEMHSYYLHKASLRLAKEKGVAGWIGKTKYPEGWLPI 899

Query: 724  DSIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D+     +        +  R  W+ L+K  +   G+RNS   A  P  + + +   + S+
Sbjct: 900  DTYNKNVDRV----HTQKLRFDWESLRKDIISAGGIRNSVLEATPPAESSSLVSSTTNSL 955

Query: 783  DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
             P  Q+  +K   SG   V                             +     I ++LK
Sbjct: 956  YPIRQDYVIK--KSGTTKV-----------------------------VFAAPDI-ENLK 983

Query: 843  KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-------LDEPSGKKLDFIYRQAWLM 895
              +  A+EI    +I+  +  QK+  Q  S +L+        ++    +L   +  A  M
Sbjct: 984  GKYEYAYEIPTKDMIDCYAIFQKFHGQGISADLWKDYSKYENEKIPMSELLNDFYYATKM 1043

Query: 896  GLKTTYYLRSRSATSVEKSTLKGVDGK 922
            G+K+ YY  S+S    E ST++  +  
Sbjct: 1044 GMKSWYYQNSKSGIKQEGSTIEPDESS 1070


>gi|325171171|ref|YP_004251146.1| intein-containing ribonucleoside triphosphate reductase alpha chain
           precursor [Vibrio phage ICP1]
 gi|323512566|gb|ADX88021.1| intein-containing ribonucleoside triphosphate reductase alpha chain
           precursor [Vibrio phage ICP1]
 gi|323513245|gb|ADX88697.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_B]
 gi|323513472|gb|ADX88923.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2006_A]
 gi|323514162|gb|ADX89610.1| ribonucleoside triphosphate reductase, alpha chain [Vibrio phage
           ICP1_2004_A]
          Length = 1076

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 171/443 (38%), Gaps = 25/443 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
            ++  +G  + F++ +L  + E A +    V    ++    K + D  S  D++ ALI S
Sbjct: 5   TVIKSNGQEVPFDASKLNRMAEWADNL--GVGWSSLVLNAIKKVSDKCSTLDIQNALIDS 62

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
                  +  +  + AR  L  + +       ++P          LY  Y    I    K
Sbjct: 63  CAEKA--DKAHLAMAARLFLGTMYKNAHGGFEERP---------HLYDFYNNMLILGLWK 111

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325
                 S    +L YL   L +++D  +EY  L+ L  +Y   +N   +E PQ  FM VA
Sbjct: 112 E----MSYDATELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVA 167

Query: 326 MGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383
           M +     E  +    V++Y  LS       TP L    ++   L+SC +    D    +
Sbjct: 168 MDIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSL 227

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
             A+         + G+G      R +   +     K  G +P+ +    +  A  Q  +
Sbjct: 228 EAAIHNAYKQTVSNAGIGISLNC-RSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQEVR 286

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
             G+          ++E+ L L+  T    ++   ++ +     L  ++ ++   W L S
Sbjct: 287 G-GSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMS 345

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                +++  Y + ++   +        G  K ++ I AV + +  L    +TG  + T+
Sbjct: 346 QLHAPEVYKAYHENYDSLKQTLNDYILSG--KPYKTIKAVEVLKLYLKQRQDTGRMYSTW 403

Query: 564 KDPCNIRSPQQHVGVVHSSNLCT 586
            D  N  +P      ++SSNLC 
Sbjct: 404 LDEANYHTPF--KEPIYSSNLCV 424



 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 125/327 (38%), Gaps = 44/327 (13%)

Query: 604  SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            ++  L+     +   ++        +  +DNVI +  +       S    R++G+G+   
Sbjct: 780  ALCFLSCIVAGRVSEEEYEDVAYYTLLGVDNVISLMDYAFPNLSYSAQNRRSVGIGITNL 839

Query: 664  QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              AL    + Y + E         E  S++   AS+ LA+E+G       + + +G  PI
Sbjct: 840  AHALASKGLSYKTLEGKNYMHRLAEMHSYYLHKASLRLAKEKGVAGWIGKTKYPEGWLPI 899

Query: 724  DSIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            D+     +        +  R  W+ L+K  +   G+RNS   A  P  + + +   + S+
Sbjct: 900  DTYNKNVDRV----HTQKLRFDWESLRKDIISAGGIRNSVLEATPPAESSSLVSSTTNSL 955

Query: 783  DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
             P  Q+  +K   SG   V                             +     I ++LK
Sbjct: 956  YPIRQDYVIK--KSGTTKV-----------------------------VFAAPDI-ENLK 983

Query: 843  KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-------LDEPSGKKLDFIYRQAWLM 895
              +  A+EI    +I+  +  QK+  Q  S +L+        ++    +L   +  A  M
Sbjct: 984  GKYEYAYEIPTKDMIDCYAIFQKFHGQGISADLWKDYSKYENEKIPMSELLNDFYYATKM 1043

Query: 896  GLKTTYYLRSRSATSVEKSTLKGVDGK 922
            G+K+ YY  S+S    E ST++  +  
Sbjct: 1044 GMKSWYYQNSKSGIKQEGSTIEPDESS 1070


>gi|293380786|ref|ZP_06626831.1| putative ribonucleotide-diphosphate reductase subunit alpha
           [Lactobacillus crispatus 214-1]
 gi|290922650|gb|EFD99607.1| putative ribonucleotide-diphosphate reductase subunit alpha
           [Lactobacillus crispatus 214-1]
          Length = 516

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 133/528 (25%), Positives = 224/528 (42%), Gaps = 37/528 (7%)

Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++ +  ++    + E  NY             +E      +   +    +   L  E   
Sbjct: 8   DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 58

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
             ++     + + +      +  +      +      ++G    Y  Y L  N ++  +E
Sbjct: 59  YLVDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 118

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +    R  M         E+ A+     + S  F  +TPT  N+G +   +  SC+L 
Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 175

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V D++  I  A+  +  L+K  GG+    T +R LGA I      S G+IP +K+  D+
Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+R+GA   YL   H  + +FLD ++   D++ R   ++    IPD+  +   
Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553
           +N    LFSP    D+   YGK         E Q      ++ +  ISA   ++ +  + 
Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQ 352

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601
           FE+G+P+I ++D  N R+PQ+ +G +  SNLC+EI   ++                  CN
Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 412

Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660
           LGS+N+ A   +     DKL S +  +V+ L+ V    +       +K N  +RAIGLG 
Sbjct: 413 LGSLNIAAAMNSA----DKLGSLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 468

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           M     L   HI Y SPEAVE        I++HA   S +LA+    +
Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAENVWCF 516


>gi|195941045|ref|ZP_03086427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia
           coli O157:H7 str. EC4024]
          Length = 552

 Score =  187 bits (474), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 135/521 (25%), Positives = 219/521 (42%), Gaps = 27/521 (5%)

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ-------CLYPEYFC 257
           ++  +I+  P+Y  + A   L      +     ++   A                 E   
Sbjct: 5   TAERVIQATPDYHALNAMLNLYDREGRIQFDKDREAVDAFFAAHVRPNSVVFGSQQERLD 64

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-E 315
             ++EG     +        +V L             +LG    Y  Y L   +G R  E
Sbjct: 65  WLVKEGYYEERVLTRYDRAFVVALFERAHVSGFRFQTFLGAWKYYTSYTLKTFDGKRYLE 124

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374
             +   + VA+ LA  +   E  A      + S  F  +TPT  N G     +L SCFL 
Sbjct: 125 SFEDRTVMVALTLAQGD---EALAERLTEEILSGRFQPATPTFLNCGKAQRGELVSCFLL 181

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP +K+  D 
Sbjct: 182 RIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDA 241

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  K   
Sbjct: 242 FSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAK 301

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTML 553
           +N    LFSP    D+  +YGK F     +        + ++ +  I+A   ++++  + 
Sbjct: 302 ENTEMALFSP---YDIERIYGKAFGDVAISELYDELVADDRIRKNTINARDFFQRLAEIQ 358

Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSIN 606
           FE+G+P+I ++D  N  +P    G ++ SNLC+EI   +S+             N  S N
Sbjct: 359 FESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASSYDENLDYADVGNDISCN 416

Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           L +    +  D      T+ TA+R L  V D+ +  ++   +  N    AIGLG M    
Sbjct: 417 LGSLNIAHTMDSPDFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHG 476

Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            L    I Y SPE ++  +     I++HA+  S+ LA+ER 
Sbjct: 477 YLAREGIAYGSPEGLDFTNLYFYTITWHALHTSMRLARERN 517


>gi|302037266|ref|YP_003797588.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrospira defluvii]
 gi|300605330|emb|CBK41663.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Candidatus Nitrospira defluvii]
          Length = 1180

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 122/639 (19%), Positives = 216/639 (33%), Gaps = 112/639 (17%)

Query: 304 RYFLHINGSRIEMPQA---FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
             F   N    + P+    F+  +   LA +       + +++N    + +  S P   +
Sbjct: 101 WTFWGKNHGYFKTPEDATAFYDEMCYMLAYQMAAPN--SPQWFNTGLHYAYGLSGPAQGH 158

Query: 361 SG--------------TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
                             HPQ  +CF+ ++ D   +  GI       A L KY  G G +
Sbjct: 159 FYVDPKSGEVVRATNAFEHPQPHACFIQSIEDDLVNENGIMDLWVREARLFKYGSGTGTN 218

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G       G+S G++ FLK+ +  A A+  G   R+ A    L+  H D+EEF
Sbjct: 219 FSRLRGDGES-LSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDLDHPDIEEF 277

Query: 463 LDLRKNTGDDRRRT---------------------------------------HDMNTA- 482
           +D +                                                  D  TA 
Sbjct: 278 IDWKVIEEQKVAAMVTGSKICAQRLNTVLKACLLVDAQGLGQVELDMKKNQVLRDAVTAA 337

Query: 483 --NWIPDLFMKRV--------------TQNAGWTLFSPDEVS----DLHDLYGKEFEIAY 522
             + +P+ ++ R+                +  W   +   VS    +        F  A 
Sbjct: 338 RRDMVPEAYIHRMFDYAKQGYTHFVFHEYDTNWDGKAYQTVSGQNSNNSVRIPNGFFDAL 397

Query: 523 ENY--ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           E         R + K+ + + A  LW K+    +    P   +    N        G ++
Sbjct: 398 EGDGDWELRRRIDGKISKTVKARDLWDKIAWAAWICADPGTQYDTTINEWHTCPEDGRIN 457

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDIN 639
           +SN C+E        +   CNL S+NL   F    +FD D     +R     L+  + + 
Sbjct: 458 ASNPCSEYMF----LDDTACNLASLNLSKFFNVEGEFDLDSFRHAVRLWTVALEISVLMA 513

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                   + ++ +R +GLG     + L    +PY S +A  I       ++  + + S 
Sbjct: 514 SFPSRAIAQKSYEYRTLGLGYANLGTILMKQSVPYDSSKATAICGAITAIMTGESYATSA 573

Query: 700 ELAQERGAYSSFKGSL--------------WDQGVFPIDSIGLLA----EVRDELAMNRT 741
           E+A E G +  +  +               +       + + +L           AM   
Sbjct: 574 EMAAEIGPFPGYNRNRESMLRVIRNHRRAAYSAAHEEYEGLTILPTSIQPEHCPPAMLLA 633

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDF 799
           +R  WD   +     G RN+    IAPT TI  +    +  I+P +  + + K    G F
Sbjct: 634 ARRAWDRALELGTAYGFRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYF 693

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838
            ++N  L   L+     D  +     Y  G    ++  P
Sbjct: 694 KIINQSLPPALQALGYTDAQIRDIGAYCAGH-QTLKGAP 731



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 11/160 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           + +  +      +     N LK      E + +   Y  G+  +     +  +   I   
Sbjct: 774 FCRQKLGISDAQLADPTFNMLKHLGFTQEDVAAANDYCCGTMTVEGAPHLKLEHLPIFDC 833

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           A          I     I   +  Q +I  A S  + +  + + + +   Y  AW   +K
Sbjct: 834 ANRCGRIGQRYIAVDAHIRMMAAAQPFISGAISKTINMPADATLEDVKAAYLFAWKSMVK 893

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
                R  S  S   +        + A P     +   + 
Sbjct: 894 AVALYRDGSKLSQPLNASSDSGKGVEASPSVMTVAEKVAE 933


>gi|66732768|gb|AAY53359.1| gp56 [Listeria phage P100]
          Length = 343

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/312 (31%), Positives = 147/312 (47%), Gaps = 50/312 (16%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL SINL + F+    + D +   +   VR+LDNVI++N   + +A  +N  +RA
Sbjct: 69  DFVVCNLSSINLGSVFS----EEDVIDRLVTIQVRMLDNVIELNKLPVPQALITNQKYRA 124

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G+   L    I + S EA   AD   E I+FH I AS++LA+E+GAY  FK S 
Sbjct: 125 VGLGTFGWHHLLAKKGIHWDSEEATNFADSLYERIAFHTIEASMKLAEEKGAYPYFKDSS 184

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G              +  +    +   W +L K+VK  G+RN   MA+AP  + A I
Sbjct: 185 WDTG--------------EYFSSRNYTSDTWVDLAKKVKEKGIRNGYLMAVAPNMSTAQI 230

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + SIDP Y + Y +        V+                                 
Sbjct: 231 AGSTASIDPIYDSFYYEEKKDYRRPVIAP------------------------------- 259

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
            +  +    + +A++++ +  ++   +RQ+ IDQA S N Y+       KL  ++  AW 
Sbjct: 260 ELNLNTYAFYKSAYKVNQIQSVKQNGKRQRHIDQAISFNFYVPSGIKASKLLELHTTAWS 319

Query: 895 MGLKTTYYLRSR 906
            GLKTTYY+RS 
Sbjct: 320 EGLKTTYYVRSN 331


>gi|157325079|ref|YP_001468504.1| gp124 [Listeria phage A511]
 gi|66733087|gb|AAY52905.1| gp124 [Listeria phage A511]
          Length = 343

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 146/312 (46%), Gaps = 50/312 (16%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           +  VCNL SINL + F+    + D +   +   VR+LDNVI++N   + +A  +N  +RA
Sbjct: 69  DFVVCNLSSINLGSVFS----EEDVIDRLVTIQVRMLDNVIELNKLPVPQALITNQKYRA 124

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG  G+   L    I + S EA   AD   E I+FH I AS++LA+E+GAY  FK S 
Sbjct: 125 VGLGTFGWHHLLAKKGIHWDSEEATSFADSLYERIAFHTIEASMKLAEEKGAYPYFKDSS 184

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           WD G              +  +    +   W +L K+VK  G+RN   MA+AP  + A I
Sbjct: 185 WDTG--------------EYFSSRNYTSDTWVDLAKKVKEKGIRNGYLMAVAPNMSTAQI 230

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
            G + SIDP Y   Y +        V+                                 
Sbjct: 231 AGSTASIDPIYDYFYYEEKKDYRRPVIAP------------------------------- 259

Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894
            +  +    + +A++++ +  ++   +RQ+ +DQA S N Y+       KL  ++  AW 
Sbjct: 260 ELNLNTYAFYKSAYKVNQIQSVKQNGKRQRHVDQAISFNFYVPSGIKASKLLELHTTAWS 319

Query: 895 MGLKTTYYLRSR 906
            GLKTTYY+RS 
Sbjct: 320 EGLKTTYYVRSN 331


>gi|189499762|ref|YP_001959232.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           phaeobacteroides BS1]
 gi|189495203|gb|ACE03751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobium phaeobacteroides BS1]
          Length = 1161

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 116/547 (21%), Positives = 204/547 (37%), Gaps = 85/547 (15%)

Query: 363 TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V D   +  GIF      A + K+  G G +++ +R  G  + G   
Sbjct: 175 YSRPQAHACFIQSVTDDLVNDGGIFDLALREARVFKFGSGSGTNFSNLRSAGEKLSGGG- 233

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD------- 471
            S G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +    D       
Sbjct: 234 SSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKSKEEDKVASLVS 293

Query: 472 ---------------------DRRRTHDMNTANW------IPDLFMKRVTQNAG------ 498
                                DR++   ++T         +P  ++ RV           
Sbjct: 294 GSRVCSTFLKAIVDEASKNGCDRQKNEALHTLMKNAVGRGVPMNYIVRVLSLVDQGFTSL 353

Query: 499 ----WTLFSPDEVS--------DLHDLYGKEFEIAYENYE--RQADRGEIKVFRKISAVA 544
               +      E          +        F  A EN E     +R      R + A  
Sbjct: 354 DFDEYNAQYESEAYQTVSGQNSNNTVRVTNAFMKAVENDELWELKERTTGMHVRSVRARD 413

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           LW K++   ++   P + F    N        G +++SN C+E        + + CNL S
Sbjct: 414 LWDKIVMSAWKCADPGLQFDTTINEWHTCPKSGRINASNPCSEYMF----LDDSACNLAS 469

Query: 605 INLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
           +NL       +     D L    R    VL+  + +     +   + ++  R +GLG   
Sbjct: 470 LNLGRFLDEKSGTIKIDDLLHASRLWTVVLEISVLMAHFPSKDIARLSYEFRTLGLGFAN 529

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-------- 714
             + L ++ IPY SP+A+ IA      I+  A  AS ELA++ G ++ ++ +        
Sbjct: 530 IGTVLMIMGIPYDSPKALAIAGAISALITGEAYKASAELARDLGPFARYEENAGDMMRVI 589

Query: 715 ----LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764
                    +   +  GL  + R          +  T+   WDE     +  G RN+   
Sbjct: 590 KNHRRAAHNMSEDEYEGLSVKPRGIDSEYCPSELFATAGKVWDEALDMGEKHGYRNAQVS 649

Query: 765 AIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
            IAPT TI  +    +  ++P +  + + K    G F +VN  +   L++     + +  
Sbjct: 650 VIAPTGTIGLVMDCDTTGVEPEFAIVKFKKLAGGGYFKIVNHSVHKALERLGYSAKQIEG 709

Query: 823 DLKYHDG 829
             KY  G
Sbjct: 710 IEKYCKG 716



 Score = 87.6 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 11/127 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA-- 848
            ++      +N    N L+   + D+   S   Y  G+  +     +  +   +   A  
Sbjct: 769 ESLGFTADQLNDQNFNMLQALGVSDQDYESANDYVCGTMTVEGAPHLKLEHLPVFDCAGK 828

Query: 849 ------FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901
                   I+ M  +   S  Q +I  A S  + +    + +++  +Y   W   +K   
Sbjct: 829 CGQKGTRYINHMAHVRMMSAVQPFISGAISKTVNMPGSATTQEIAEVYFSGWQHMIKAIT 888

Query: 902 YLRSRSA 908
             R  S 
Sbjct: 889 IYRDGSK 895


>gi|67008230|emb|CAH18520.1| ribonucleoside-diphosphate reductase alpha chain [Rhodobacteraceae
           bacterium 198]
          Length = 340

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 140/344 (40%), Gaps = 51/344 (14%)

Query: 576 VGVVHSSNLCTEITL---NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632
              +   N  +E T     +       CNLGS+N+         D   LA T+ TA+R L
Sbjct: 14  CSEILQVNTASEFTDDLSYAQMGTDISCNLGSMNIARTM-----DGGDLAGTVGTAIRAL 68

Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           + V +++   ++   +K N    AIGLG M     L    I Y S E ++  +     + 
Sbjct: 69  NAVSEMSAIDSVPSIRKGNDEGHAIGLGQMNLHGYLARERIYYGSAEGIDFTNIYFCTVL 128

Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA---MNRTS 742
           FHA+SAS  LAQE G  +  F+ S +  G F       D +     VR+      +   S
Sbjct: 129 FHALSASNALAQEIGTRFKGFEDSTYADGSFFAKYVDRDWLPETDRVRELFEGAGIPVPS 188

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTV 801
           R  W  L  +VK  G+ N N  A+ PT +I+ I   + SI P    + ++     G    
Sbjct: 189 REDWSALCDKVKEHGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRKEGKIGRVYY 248

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861
              ++ N                               +  + +  A++I P  +I++ +
Sbjct: 249 PAPYMTN-------------------------------ENLEYYRDAYDIGPEAIIDTYA 277

Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
              + +DQ  SL L+   E S + ++     AW  G+KT YY+R
Sbjct: 278 AATQHVDQGLSLTLFFPAEASTRDINRAQIYAWKKGIKTIYYIR 321


>gi|86749663|ref|YP_486159.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris HaA2]
 gi|86572691|gb|ABD07248.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris HaA2]
          Length = 1257

 Score =  185 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 115/579 (19%), Positives = 204/579 (35%), Gaps = 93/579 (16%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   S   HPQ  +CF+  + D   +  GI       A L KY  G G++
Sbjct: 175 YYVDYKTGKLTKSKSAYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E +
Sbjct: 235 FSRLRGEGERLSG-GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAY 293

Query: 463 LDL-------------------------------RKNTGDD---------RRRTHDMNTA 482
           +D                                 + +GDD          RR   +   
Sbjct: 294 IDWKVKEEQKVAALVTGSKLNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKIARR 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN---- 524
             + D  +KRV Q              +  W   +   VS  +       +  +      
Sbjct: 354 ALVTDAMIKRVIQYAKQGYKEIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVET 413

Query: 525 --YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                   R   KV + + A  LW K+ T  + +  P + F    N     +  G + +S
Sbjct: 414 DGDWNLTSRTTKKVMKTVKARDLWEKIGTAAWASADPGLHFNSTMNDWHTCKASGDIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINC 640
           N C+E        +   CNL S NLL  +    N FD        R    VL+  + +  
Sbjct: 474 NPCSEYMF----LDDTACNLASANLLTFYDTTANVFDLPAYEHLCRLWTVVLEISVLMAQ 529

Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700
              ++  + ++  R +GLG       L  + + Y S E   +       ++  + + S E
Sbjct: 530 FPSKQIAELSYEFRTLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGVSYATSAE 589

Query: 701 LAQERGAYSSFKGS-LWDQGVFPIDSIGLLAEVRDELAMN-----------------RTS 742
           +A + G +  +K +      V          E R   A++                   +
Sbjct: 590 MAAKLGPFPGYKKNAAHMLRVIRNHRRAAHGESRGYEALSVAPVPLDHAGCPIPEAIAHA 649

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800
           +  WD+  +  +  G RN+    +APT TI  +    +  I+P +  + + K    G + 
Sbjct: 650 KAAWDKALELGELHGYRNAQTTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWK 709

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI 837
           ++N  +   L+     +  +     Y    GS+ N   I
Sbjct: 710 IINRAVPAALRILGYPENQIAEIEAYAVGHGSLSNAPAI 748



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  D   + +   + L         + +   +  G  ++     +  +   +   
Sbjct: 789 FLRETLKLDAEAIAAPNFDLLAAIGFSKREIEAANIHICGAMTVEGAPHLKAEHYSVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKVGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 909 ANALYRDGSK 918


>gi|254489336|ref|ZP_05102539.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
 gi|214041843|gb|EEB82483.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
          Length = 346

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 145/365 (39%), Gaps = 60/365 (16%)

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLA 609
            F+D  N  +P    G +  SNLC+EI                       CNLGS+N+  
Sbjct: 1   MFEDTVNSANPIN--GRIAMSNLCSEILQVNEASTFHDDLGYDHLGTDISCNLGSLNIAK 58

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                  D     +T+ T++RVL  V +++  +++   ++ N    AIGLG M     L 
Sbjct: 59  TM-----DGPDFGATVETSIRVLTAVSEMSSINSVPSVRRGNDESHAIGLGQMNLHGYLA 113

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP----- 722
              I Y S E VE        +++HAI AS  LAQE+   +  F  S +  G F      
Sbjct: 114 RERIHYGSAEGVEFTSVYFAAVTYHAIRASNLLAQEKDETFKDFATSTYASGAFFETYTT 173

Query: 723 IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781
            D +     V+      +  +R  W +L+  V   G+ N N  A+ PT +I+ I   + S
Sbjct: 174 RDWLPESDAVKALFDGKDLPTREDWAKLRDLVMEHGLYNRNLQAVPPTGSISYINNSTSS 233

Query: 782 IDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           I P    + ++     G       F+ N+                               
Sbjct: 234 IHPIVSKIEIRKEGKIGRVYYPAPFMNND------------------------------- 262

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899
             + +  A+EI P  +I++ +     +DQ  SL L+   + S + ++     AW  G+KT
Sbjct: 263 NLEFYRDAYEIGPEAIIDTYAAATTHVDQGLSLTLFFPADASTRDINRAQIYAWKKGIKT 322

Query: 900 TYYLR 904
            YY+R
Sbjct: 323 IYYIR 327


>gi|196229990|ref|ZP_03128854.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter
           flavus Ellin428]
 gi|196226316|gb|EDY20822.1| ribonucleotide-diphosphate reductase subunit alpha [Chthoniobacter
           flavus Ellin428]
          Length = 159

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 1/160 (0%)

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
           MSG+F   N  L+ EL+ R LWDE M++DLKY DGS+  I+R+P +LK+++ TAFEI P 
Sbjct: 1   MSGEFIRTNDHLLRELQNRGLWDEEMLADLKYFDGSVQQIDRVPAELKRLYKTAFEIAPT 60

Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
           W+++ A+ RQKWIDQAQS NL+L E   +   F+YR+AW  GLKTTYYLR+ + +    S
Sbjct: 61  WILQCAAARQKWIDQAQSTNLWLAESDARTASFMYREAWERGLKTTYYLRTLNKS-AIDS 119

Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           + +         P  + ++         +  +   CE CQ
Sbjct: 120 SNRDRRATTAPEPKREYSAEEKQSCSIEAMRNGGTCEACQ 159


>gi|167924463|ref|ZP_02511554.1| hypothetical protein BpseBC_38253 [Burkholderia pseudomallei
           BCC215]
          Length = 613

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 118/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 239

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 240 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+INL     N         FD
Sbjct: 289 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAINLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|169838755|ref|ZP_02871943.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7a]
          Length = 228

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 3/230 (1%)

Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           +NL  H   N++D+ +L  ++R+A+R LDN+IDI   ++ +A  +N   RA+GLG+MGF 
Sbjct: 1   MNLSRHLNGNEWDWRRLEDSVRSAIRQLDNLIDITKLSVPEAMHANKQTRALGLGVMGFT 60

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L  L + Y S E+ E+ D+  EFIS+HA+  S  LAQE G+Y +F+GS W +G+ PID
Sbjct: 61  DVLERLRLAYDSEESYELIDKLTEFISYHAVDESANLAQEFGSYPAFEGSGWSRGILPID 120

Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           +I +L + RD ++ ++R S L W +L+ +VK  GMRN+  MAIAPTA I +I G +  +D
Sbjct: 121 TIDILEKNRDIDVKISRNSSLDWGKLRSKVKK-GMRNATVMAIAPTANIGHIAGTTPGLD 179

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           P +  ++ +S ++G F  VN  LV ELK R LW   +  +L  + G I N
Sbjct: 180 PRFTQIFSRSTLNGKFLEVNPNLVRELKDRSLWS-EVKDELLINQGDIQN 228


>gi|207344318|gb|EDZ71502.1| YIL066Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 223

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 13/219 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201
           ++ ++  DG        ++   +     GL    + +  V       +Y G++  +L+  
Sbjct: 16  QMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              +   +    P+YA + AR  +  L ++      K         ++ L+        +
Sbjct: 76  AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
                     +++  +   L + + Y+RDF + Y G + L   Y L +NG   E PQ   
Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187

Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           MRVA+G+   + E     ++ YNL+S  +F  ++PTLFN
Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFN 223


>gi|213581375|ref|ZP_03363201.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 305

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 49/319 (15%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
           E A+C L + NL A         D+L      AVR LD ++D   + I  AK+     R 
Sbjct: 2   EIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRT 56

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + 
Sbjct: 57  LGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETT 116

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + +G+ PID+     +      +N      W++L++ +KT G+RNS   A+ P+ T + I
Sbjct: 117 YAKGILPIDTYKKDLDAI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQI 172

Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835
              +  I+P    + +K++  G    V                                 
Sbjct: 173 SNATNGIEPPRGYVSIKASKDGILRQVVPDY----------------------------- 203

Query: 836 RIPDDLKKIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDF 887
              + LK  +   +E+      ++     QK+IDQ+ S N   D       +   ++L  
Sbjct: 204 ---EHLKDAYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLK 260

Query: 888 IYRQAWLMGLKTTYYLRSR 906
               A+  G+KT YY  +R
Sbjct: 261 DLLTAYKFGVKTLYYQNTR 279


>gi|242278302|ref|YP_002990431.1| ribonucleoside-diphosphate reductase [Desulfovibrio salexigens DSM
           2638]
 gi|242121196|gb|ACS78892.1| Ribonucleoside-diphosphate reductase [Desulfovibrio salexigens DSM
           2638]
          Length = 894

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 160/422 (37%), Gaps = 36/422 (8%)

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
            +Y   ++  Y  ++       ++ +  + A  L  ++    +++G P I ++D     +
Sbjct: 334 SVYNTLWDGDYSRWQELGL--PLRKYDTVKARDLLEEISESAWKSGDPGILYQDTTQRNT 391

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIR 626
           P  ++  +    + T      +    + C LG++ L  +         +FD D     + 
Sbjct: 392 PGTYIDPLRLKPMSTNPCGEQALGYWSNCLLGAMVLYRYVVNPFTKEARFDSDLFHDDLT 451

Query: 627 TAVRVLDNVIDINCHTIE--KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
             +  +D + D+N +     K + ++   + IG+   G    L +L + Y S E++E   
Sbjct: 452 RTMAFMDTMSDLNQNKHPLQKHRDADKYGKRIGIEFTGLGDMLAMLGMRYGSEESIEFIK 511

Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
           E M   +   IS S  +A+  G                ++++      +  L     S+L
Sbjct: 512 EIMRDKAITEISVSANIAERFG---------------EVEALKTKDARQRFLDCPYISKL 556

Query: 745 PWD-ELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVV 802
               +L+K++   G+R++    + P+ +I+ +    +  I+P +   Y +        V 
Sbjct: 557 GLPNKLQKKILKTGLRHTAFNTVGPSGSISIMSDNCTSGIEPVFMFSYARETRLEAGKVF 616

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862
               +  LK    W      +  +   +   ++      K  +  A E+D M  I   + 
Sbjct: 617 EFIHMPPLK----WMLETNQEHLFGKYTALQLKE-----KLNYVQADELDYMDRIRMQAA 667

Query: 863 RQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921
            Q++ D + S  + L E + K+ +  IY ++W  GLK     R+     V        + 
Sbjct: 668 IQQYTDSSISSTINLAEETPKETIFEIYLESWKHGLKGVTVFRNGCKKGVLSKKEDSKEA 727

Query: 922 KL 923
             
Sbjct: 728 DP 729



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 13/175 (7%)

Query: 344 NLLSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGL 400
            LL S  F+ +   L   G  H    LS+C+L  +  D L GIF A ++ A    Y GG 
Sbjct: 72  ELLQSGRFIPAGSILSGLGNEHAKCSLSNCYLAKIESDSLEGIFEAQKKLARTYSYRGGS 131

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G D T +R  G  ++     S G + F+ + ++    +     R+GA+   ++  H +  
Sbjct: 132 GIDITILRPSGDPVNNAAVTSSGAVSFMPLFSELTNTI-GQNGRRGALMISIDIRHPETR 190

Query: 461 EFLDLRKNTGD---------DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
            F+  +    +           +     N +  + D FM+ V ++  WT   PD 
Sbjct: 191 RFIWCKSKPEEIFGVDSLTGKVQDVFGANISLKVTDEFMQAVEEDKDWTFIFPDR 245


>gi|237509351|ref|ZP_04522066.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
 gi|235001556|gb|EEP50980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Burkholderia pseudomallei MSHR346]
          Length = 613

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHM 241

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               D                           +  + A  +WR++++   +   P + F 
Sbjct: 242 APPRD-------------APGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDHHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|91977382|ref|YP_570041.1| ribonucleotide-diphosphate reductase subunit alpha
           [Rhodopseudomonas palustris BisB5]
 gi|91683838|gb|ABE40140.1| ribonucleoside-diphosphate reductase class II [Rhodopseudomonas
           palustris BisB5]
          Length = 1256

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 202/565 (35%), Gaps = 93/565 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+  + D   +  GI       A L KY  G G++++ +RG G  + G 
Sbjct: 189 SAYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGERLSG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDL----------- 465
            G+S G++ FLK+ +  A A+  G   R+ A    ++  H D+E ++D            
Sbjct: 248 GGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKEEQKVSAL 307

Query: 466 --------------------RKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQ- 495
                                + +GDD          RR   +     + D  +KRV Q 
Sbjct: 308 VTGSKLNQKHLKAILKACVNCQGSGDDCFDPEKNPALRREVKLARRALVTDAMIKRVIQY 367

Query: 496 -------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYENYERQADRGE--IKV 536
                        +  W   +   VS  +         +F  A E        G    KV
Sbjct: 368 AKQGYKEIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLTGRTTKKV 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N     +  G + +SN C+E        +
Sbjct: 428 MKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S NLL  +    N FD        R    VL+  + +     ++  + ++  R
Sbjct: 484 DTACNLASANLLTFYDTTANVFDLGAYEHLCRLWTVVLEISVLMAQFPSKQIAELSYEFR 543

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG       L  + + Y S E   +       ++  + + S E+A + G +  +K +
Sbjct: 544 TLGLGFANIGGLLMTMGLSYDSKEGRALCGALSAIMTGVSYATSAEMAAKLGPFPGYKKN 603

Query: 715 -LWDQGVFPIDSIGLLAEVRDELAMN-----------------RTSRLPWDELKKRVKTI 756
                 V          E R   A++                   ++  WD   +  +  
Sbjct: 604 AAHMLRVIRNHRRAAHGESRGYEALSVAPVPLDHAGCPIPEAITHAKAAWDRALELGELH 663

Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           G RN+    +APT TI  +    +  I+P +  + + K    G + ++N  +   L+   
Sbjct: 664 GYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYWKIINRAVPAALRILG 723

Query: 815 LWDEAMISDLKYH--DGSIGNIERI 837
             +  +     Y    GS+ N   I
Sbjct: 724 YPENQIAEIEAYAVGHGSLSNAPAI 748



 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 11/137 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           +++  +  +   + +   + L         + +   +  G  ++     +  D   +   
Sbjct: 789 FLRQTLKIEADAIAAPNFDLLAALGFSKREIEAANIHICGAMTVEGAPHLKADHYAVFDC 848

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + ++ + +     Y  +W + LK
Sbjct: 849 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATVEDCKSAYMLSWKLALK 908

Query: 899 TTYYLRSRSATSVEKST 915
                R  S  S   S+
Sbjct: 909 ANALYRDGSKLSQPLSS 925


>gi|254192572|ref|ZP_04899011.1| ribonucleotide reductase system [Burkholderia pseudomallei S13]
 gi|169649330|gb|EDS82023.1| ribonucleotide reductase system [Burkholderia pseudomallei S13]
          Length = 613

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 239

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 240 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDHHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|126455505|ref|YP_001077113.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           1106a]
 gi|167851317|ref|ZP_02476825.1| hypothetical protein BpseB_39126 [Burkholderia pseudomallei B7210]
 gi|242311117|ref|ZP_04810134.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106b]
 gi|126229273|gb|ABN92686.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106a]
 gi|242134356|gb|EES20759.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1106b]
          Length = 613

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHM 241

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               D                           +  + A  +WR++++   +   P + F 
Sbjct: 242 APPRD-------------APGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|217424388|ref|ZP_03455887.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           576]
 gi|217392853|gb|EEC32876.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           576]
          Length = 594

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 43  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 102

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 103 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 162

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 163 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHM 222

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               D                           +  + A  +WR++++   +   P + F 
Sbjct: 223 APPRD-------------APGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 269

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 270 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 325

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 326 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 385

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 386 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 426

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 427 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 486

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 487 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 529

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 530 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 589

Query: 915 TLKGV 919
              GV
Sbjct: 590 DDDGV 594


>gi|325066266|ref|ZP_08124939.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces
           oris K20]
          Length = 306

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 136/322 (42%), Gaps = 48/322 (14%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+         D    A TIRTAVR L  V D  +  ++    + NH   AIGL
Sbjct: 7   CNLGSLNIAKTM-----DSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGNHESHAIGL 61

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
           G M     L    I Y S E ++  +     + F A++AS E+A ER  ++  F+ S + 
Sbjct: 62  GQMNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFVGFEDSTYA 121

Query: 718 QGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G F    +          + E+    +++  +R  W  L +RVK  G+ N N  A+ PT
Sbjct: 122 SGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAALAERVKKGGLYNRNLQAVPPT 181

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
            +I+ I   + SI P    + ++     G       F+ N+                   
Sbjct: 182 GSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND------------------- 222

Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887
                         + +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++ 
Sbjct: 223 ------------NLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNR 270

Query: 888 IYRQAWLMGLKTTYYLRSRSAT 909
               AW  G+KT YY+R R A 
Sbjct: 271 AQIYAWRKGIKTLYYIRLRQAA 292


>gi|326914624|ref|XP_003203624.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Meleagris gallopavo]
          Length = 226

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 104/229 (45%), Positives = 147/229 (64%), Gaps = 7/229 (3%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
           NG S G++P L+V N+TA  V+QG  KR GA   YLE WH+D+ EFLDL+KNTG + +R 
Sbjct: 2   NGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRA 61

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            D+  A WIPDLFMKRV  N  W+L  P+E   L +++G+EFE  YE+YE+Q      +V
Sbjct: 62  RDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRV 116

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R + A  LW  ++    ETG P++ +KD CN +S QQ++G +  SNLCTEI   +S +E
Sbjct: 117 RRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDE 176

Query: 597 TAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644
            AVCNL S+ L  +  + + +D+ KLA   +  VR L+ +IDIN + + 
Sbjct: 177 VAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVP 225


>gi|53723300|ref|YP_112285.1| hypothetical protein BPSS2282 [Burkholderia pseudomallei K96243]
 gi|254265005|ref|ZP_04955870.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1710a]
 gi|52213714|emb|CAH39768.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|254216007|gb|EET05392.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           1710a]
          Length = 613

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 239

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 240 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|76818060|ref|YP_336579.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           1710b]
 gi|76582533|gb|ABA52007.1| ribonucleoside reductase, intein-containing [Burkholderia
           pseudomallei 1710b]
          Length = 639

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 88  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 147

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 148 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 207

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 208 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 265

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 266 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 314

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 315 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 370

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 371 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 430

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 431 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 471

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 472 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 531

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 532 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 574

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 575 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 634

Query: 915 TLKGV 919
              GV
Sbjct: 635 DDDGV 639


>gi|254187031|ref|ZP_04893546.1| ribonucleotide reductase system [Burkholderia pseudomallei Pasteur
           52237]
 gi|157934714|gb|EDO90384.1| ribonucleotide reductase system [Burkholderia pseudomallei Pasteur
           52237]
          Length = 665

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 114 PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 173

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 174 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 233

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 234 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 291

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 292 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 340

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 341 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 396

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 397 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 456

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 457 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 497

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 498 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 557

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 558 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 600

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 601 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 660

Query: 915 TLKGV 919
              GV
Sbjct: 661 DDDGV 665


>gi|53715933|ref|YP_106543.1| hypothetical protein BMAA2027 [Burkholderia mallei ATCC 23344]
 gi|52421903|gb|AAU45473.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
          Length = 594

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 43  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 102

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 103 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 162

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 163 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 220

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 221 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 269

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 270 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 325

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 326 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 385

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 386 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 426

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 427 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 486

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 487 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 529

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 530 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 589

Query: 915 TLKGV 919
              GV
Sbjct: 590 DDDGV 594


>gi|121597480|ref|YP_990650.1| ribonucleotide reductase-like protein [Burkholderia mallei SAVP1]
 gi|167002214|ref|ZP_02268004.1| ribonucleotide reductase, large subunit [Burkholderia mallei
           PRL-20]
 gi|254176553|ref|ZP_04883211.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|121225278|gb|ABM48809.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|160697595|gb|EDP87565.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|243062113|gb|EES44299.1| ribonucleotide reductase, large subunit [Burkholderia mallei
           PRL-20]
          Length = 677

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 126 PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 185

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 186 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 245

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 246 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 303

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 304 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 352

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 353 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 408

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 409 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 468

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 469 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 509

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 510 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 569

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 570 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 612

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 613 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 672

Query: 915 TLKGV 919
              GV
Sbjct: 673 DDDGV 677


>gi|238562332|ref|ZP_00440615.2| ribonucleotide reductase, large subunit [Burkholderia mallei GB8
           horse 4]
 gi|254203557|ref|ZP_04909918.1| ribonucleotide reductase, large subunit [Burkholderia mallei FMH]
 gi|254205430|ref|ZP_04911783.1| ribonucleotide reductase, large subunit [Burkholderia mallei JHU]
 gi|147745796|gb|EDK52875.1| ribonucleotide reductase, large subunit [Burkholderia mallei FMH]
 gi|147755016|gb|EDK62080.1| ribonucleotide reductase, large subunit [Burkholderia mallei JHU]
 gi|238522855|gb|EEP86297.1| ribonucleotide reductase, large subunit [Burkholderia mallei GB8
           horse 4]
          Length = 677

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 126 PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 185

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 186 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 245

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 246 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 303

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 304 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 352

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 353 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 408

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 409 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 468

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 469 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 509

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 510 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 569

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 570 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 612

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 613 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 672

Query: 915 TLKGV 919
              GV
Sbjct: 673 DDDGV 677


>gi|124381297|ref|YP_001025139.1| ribonucleotide reductase-like protein [Burkholderia mallei NCTC
           10229]
 gi|126446010|ref|YP_001079488.1| ribonucleotide reductase-like protein [Burkholderia mallei NCTC
           10247]
 gi|126238864|gb|ABO01976.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|261826248|gb|ABN00538.2| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
          Length = 689

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 138 PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 197

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 198 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 257

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 258 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 315

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 316 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 364

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 365 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 420

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 421 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 480

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 481 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 521

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 522 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 581

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 582 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 624

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 625 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 684

Query: 915 TLKGV 919
              GV
Sbjct: 685 DDDGV 689


>gi|134281694|ref|ZP_01768401.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           305]
 gi|134246756|gb|EBA46843.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           305]
          Length = 613

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 239

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 240 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIGATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYITSDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|167908267|ref|ZP_02495472.1| hypothetical protein BpseN_38946 [Burkholderia pseudomallei NCTC
           13177]
 gi|254182480|ref|ZP_04889074.1| ribonucleotide reductase system [Burkholderia pseudomallei 1655]
 gi|184213015|gb|EDU10058.1| ribonucleotide reductase system [Burkholderia pseudomallei 1655]
          Length = 613

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 239

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 240 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIGATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|209967330|ref|YP_002300245.1| ribonucleoside-diphosphate reductase, putative [Rhodospirillum
           centenum SW]
 gi|209960796|gb|ACJ01433.1| ribonucleoside-diphosphate reductase, putative [Rhodospirillum
           centenum SW]
          Length = 1191

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 133/337 (39%), Gaps = 48/337 (14%)

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDIN 639
           C E  L         C LGS+NL A   +        D ++LA  +  AVR++DNV+D++
Sbjct: 658 CGEQPLPPY----GACLLGSVNLAALVRDPFTPAARLDREELARVVPLAVRMMDNVVDVS 713

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
              +E  +      R IGLG+ G   AL L  + Y S   V + +E +  I   A   S 
Sbjct: 714 RFPLEAQEAEAQAKRRIGLGVTGLADALILCGVRYGSEAGVRLTEEWLRAIQVAAYRTSA 773

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
            LA E+GA+  F                     R+        R    ++++ +   G+R
Sbjct: 774 ALAAEKGAFPLF--------------------DREAFLERPMVRALPPDVREAIAAQGVR 813

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818
           N+   +IAPT TI+   G  S  I+P +   Y ++ +  D +      V +L  R L+ E
Sbjct: 814 NALVTSIAPTGTISLFAGNVSSGIEPVFAYEYQRAVLMPDGSRRTET-VQDLAYR-LYRE 871

Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878
            M  D                 L      A  ++P   +   +  Q+ +D A S  +   
Sbjct: 872 RMGPD---------------APLTDAFVDAQSLEPAAHLVMQAAAQRHVDSAISKTINCP 916

Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +   +    +YRQA+ +G K     R  + T    S
Sbjct: 917 ADLPFEAFKDVYRQAYELGCKGCTTYRPNAVTGSVLS 953



 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 36/288 (12%)

Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                   +G+ ++      + RVA  LA  E +       F + L  F F+ +   L  
Sbjct: 28  MKYRLKAPDGAPVDATVADTWTRVARALAAPERDPAAWEERFRSALEGFRFLPAGRILAG 87

Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418
           +GTR    L +CF+  TVPDD+ GIF  L+E A+  +  GG+G D++ +R  GA + G  
Sbjct: 88  AGTRRTVTLFNCFVMGTVPDDMGGIFAHLREAALTLQQGGGIGYDFSTLRPKGAPVAGVG 147

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             + G + F+ V +     +   G R+GA+ A L   H D+E F+D ++    +  R  +
Sbjct: 148 ADASGPVSFMDVWDSMCRTIMSAGSRRGAMMATLRCDHPDIELFIDAKR----EPGRLRN 203

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
            N +    D FM  V ++  W L                             R + +VFR
Sbjct: 204 FNLSVLATDDFMAAVREDRPWPL-----------------------------RFDGRVFR 234

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
            + A ALW +++   ++   P + F D  N ++   +   + ++N C 
Sbjct: 235 TVPARALWDRIMRATYDYAEPGVIFIDRINEQNNLSYCETISATNPCV 282


>gi|167829855|ref|ZP_02461326.1| hypothetical protein Bpseu9_39630 [Burkholderia pseudomallei 9]
 gi|226199237|ref|ZP_03794797.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928644|gb|EEH24671.1| ribonucleotide reductase, large subunit [Burkholderia pseudomallei
           Pakistan 9]
          Length = 613

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 239

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 240 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIDATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRVGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|254296584|ref|ZP_04964040.1| ribonucleotide reductase system [Burkholderia pseudomallei 406e]
 gi|157806542|gb|EDO83712.1| ribonucleotide reductase system [Burkholderia pseudomallei 406e]
          Length = 613

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 117/605 (19%), Positives = 203/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTL--R 239

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
                     G                     +  + A  +WR++++   +   P + F 
Sbjct: 240 HTAPPRDAPGG-----------ALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIGATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 TG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|213159319|ref|YP_002321362.1| rr1 [Oryctes rhinoceros virus]
 gi|202073505|gb|ACH96181.1| rr1 [Oryctes rhinoceros virus]
          Length = 737

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 132/731 (18%), Positives = 259/731 (35%), Gaps = 117/731 (16%)

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
           R    ++ + D+  L + L  +RDF +   G+++L +RY L       E  Q   +R+A 
Sbjct: 78  RKWFPNIGNADIDVL-SWLDTDRDFIYSSHGMRLLKNRYLL-----PAEPIQYCMLRIAK 131

Query: 327 GLALK--------------ETEKEKRAVEFYNLLSSFHFMCSTPTLF---NSGTRHPQLS 369
             + +              +    +     Y++LS   +M ++  L    N+        
Sbjct: 132 LFSRRNSSNNSSSSDGNSIDDINFQLWRLMYDVLSCG-YMHTSSILADADNADKNIVPGE 190

Query: 370 SCFLTTVPDDLY-GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +C L     D        + E   L     G+G   + V   G  +        G   F 
Sbjct: 191 ACRLLVCNPDYDRAFVNQINEICNLISLGVGVGMSASTVPLHGYAV--NGKIRGGFKSFA 248

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +          +RK  +  Y+E  +  + E  +LR    +      ++     +PD 
Sbjct: 249 RKLDSCN--YLSIYERKPKIAIYIEMHNNTIYEAFELRNPLTN---HLENVFVGIMVPDY 303

Query: 489 FMKRVTQNAGWTLF---SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           F++    +  W LF   +  +   L +  G E++  Y+ +             K+S+ AL
Sbjct: 304 FIECYENDEDWYLFPGDAKLDGRTLCEFTGDEYKRMYKRFVEANL-----YTNKVSSSAL 358

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
              ++T + ETG P++ + D  N  S  +H+G + + NLC EI   +S  +++ C L S+
Sbjct: 359 MDDLVTCISETGSPYVVWSDNVNRFSNHKHLGKIKTLNLCAEIANYASVGKSSSCTLMSV 418

Query: 606 NLLAH----------------FANNQFDYDKLAST-----IRTAVRVLDNVIDINCHTIE 644
           N   +                 +    DY+            T  +    +  +    + 
Sbjct: 419 NFAMYREFPDVLDRVYAFVEEHSEFDADYNGFHRAASEFQHATMSKYAYAMGFVATWALN 478

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
                    R +G+  +G      +  +     + V++  E  E +    I +S + A+ 
Sbjct: 479 MFMGVTRKQRELGVSPLGAYDMAIMDGV-----DPVKVIAELSEAMYKGCIYSSCKFARM 533

Query: 705 RG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                + +KGS + +G+       LL + R      +     W +  + ++T  M NS  
Sbjct: 534 YDVECAYYKGSPFSEGIP----QWLLRDER------KIITTDWTKTCELMRTK-MANSQL 582

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
            A APTAT + + G ++S+      +  + + +G          N+L    L  + ++  
Sbjct: 583 TAQAPTATTSMLVGEAESVTIPMSIVMARESENGR---------NDLICYGLLYKLLME- 632

Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883
                         P  L        +ID   L+   +R   +IDQ+QS  ++    S +
Sbjct: 633 -----------PAEPLHLD------NDID-RQLL-MYARSAPFIDQSQS-TMFSIVLSRQ 672

Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            +  +    + + LKT  YY  +          +      +   P      S+       
Sbjct: 673 NILNLIMDTYYLKLKTAIYY--TLPKQ------INNTLTIVRQTPQPQKRESSTDCQFSP 724

Query: 943 SCTSDTECEVC 953
             +    CE C
Sbjct: 725 KRSRRPSCEAC 735


>gi|145638029|ref|ZP_01793660.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittHH]
 gi|145268770|gb|EDK08742.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittHH]
          Length = 241

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 16/248 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI K+ P+Y  + AR  +  LR++                      ++  + +  
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPP-----------RLYDHVKKLVRM 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
               + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378
           ++ V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D
Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232

Query: 379 DLYGIFGA 386
            L  I   
Sbjct: 233 SLDSINAT 240


>gi|71835949|gb|AAZ42350.1| ribonucletotide reductase large subunit [Caenorhabditis remanei]
          Length = 214

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 11/224 (4%)

Query: 590 LNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648
             S+ +E AVCNL SI L  +     +FD+ KLA   +   + L+ +ID+N + +E+A+ 
Sbjct: 1   EYSAPDEIAVCNLASIALNRYVTPEKKFDFKKLAEVTKVITKNLNKIIDVNYYPVEEARN 60

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708
           SN  HR IGLG+ G      L+  P+ S +A ++     E I + A+ AS ELA+  G Y
Sbjct: 61  SNMRHRPIGLGVQGLADCFMLMRYPFTSKQARDLNKRIFETIYYAALEASCELAERDGPY 120

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
           S+++GS   +G    D  G+            T +  W  L+K++ T G+RNS  MA  P
Sbjct: 121 STYEGSPVSKGQLQFDMWGVTP----------TDQCDWAALRKKIATHGIRNSLLMAPMP 170

Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
           TA+ A I G ++SI+P   N+Y +  +SGDF +VN  ++ +L +
Sbjct: 171 TASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVE 214


>gi|126444513|ref|YP_001064201.1| ribonucleotide reductase-like protein [Burkholderia pseudomallei
           668]
 gi|126224004|gb|ABN87509.1| ribonucleotide reductase system [Burkholderia pseudomallei 668]
          Length = 613

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 116/605 (19%), Positives = 202/605 (33%), Gaps = 69/605 (11%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S  V   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPDVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHM 241

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
               D                           +  + A  +WR++++   +   P + F 
Sbjct: 242 APPRD-------------APGGALPGADGAWTYASVPARHVWREIVSAARDGAGPGLVFV 288

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FD 617
           D  +   P +    + +++ C    L           LG+I+L     N         FD
Sbjct: 289 DAIDAADPLRGRERIGATSPCGAQPLPPY----GSAMLGAIDLSRFVRNPFGAGGEPRFD 344

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
           +    + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP
Sbjct: 345 FAAFDTAVRIEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSP 404

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            A E+A      +  HA +AS ELA ERGAY                    L +    L 
Sbjct: 405 AAREMARYIASDLRHHAYAASAELAAERGAYP-------------------LCDRHAHLD 445

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNM 795
             R        +   ++  G+R+S+  + AP   ++   G   S  I+P+   +  +   
Sbjct: 446 ALRAGPPLPHAVCHAIERDGLRHSHLTSFAPVIGVSLAFGDHCSPGIEPARAWIEHRPVR 505

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           +G                 +  E     L         +      L    AT  ++ P  
Sbjct: 506 AG-----------AAGAPGMRAENHAHRLFRS------LRGERAALPDYFATDADVAPGE 548

Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++D      L L    S ++++ +   AW   LK+    R+  A   + S
Sbjct: 549 RLAMRVALQPYVDAGIDNTLTLANHYSLEEVNALLFAAWRAKLKSVAIRRADLARDAQPS 608

Query: 915 TLKGV 919
              GV
Sbjct: 609 DDDGV 613


>gi|269125830|ref|YP_003299200.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomonospora curvata DSM 43183]
 gi|268310788|gb|ACY97162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Thermomonospora curvata DSM 43183]
          Length = 1370

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 103/455 (22%), Positives = 168/455 (36%), Gaps = 24/455 (5%)

Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGI 383
           A G    + + E    E    L    F  ++P  FN GT+ P Q+S+CF+ +V D +  I
Sbjct: 108 AHGYFASDEDAEIFDHELKYALIHQIFSFNSPVWFNVGTKSPWQVSACFILSVDDTMESI 167

Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442
               +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G  
Sbjct: 168 LDWYKEEGIIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGA 226

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
            R+ A    L+  H D+EEF+  +    D  R            D            T  
Sbjct: 227 TRRAAKMVVLDVDHPDIEEFIWTKAREEDKIRALR---------DAGFDMDLGGKDITSV 277

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPW 560
                 +       EF  A EN E    R     +V   + A  L+R M    +E   P 
Sbjct: 278 QYQNA-NNSVRVSDEFMRAVENDEEFGLRARLTGEVIETVRARDLFRAMAQAAWECADPG 336

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619
           I + D  N        G + +SN C+E      S + + CNL SINLL     ++ FD  
Sbjct: 337 IQYDDTINDWHTNPETGRITASNPCSEYM----SLDNSSCNLASINLLKFLREDDTFDIT 392

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
           +        +  +D  I       EK  ++   +R +G+G     + L      Y S   
Sbjct: 393 RFVKLTELIITAMDISITFADFPTEKIAETTRAYRQLGIGYANLGALLMATGHAYDSEGG 452

Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739
             +A      ++  A   S ELA   GAY  +  +                ++R    M+
Sbjct: 453 RSLAAAITSLMTATAYRRSAELAGIVGAYDGYARNAEAHKRVMRKHAAANDQLRPLEEMD 512

Query: 740 RT----SRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +     +   W +     +  G RN+    +APT 
Sbjct: 513 KAIHAEATRQWSQCLALGEKNGYRNAQASLLAPTG 547



 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 8/175 (4%)

Query: 771  TIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-- 826
            TI  +    +  I+P      + K    G   +VN  +   L++     E + + ++Y  
Sbjct: 978  TIGLMMDCDTTGIEPDLALKKFKKLVGGGSMEIVNHTVPRALRKLGYQQEQVEAIVEYIS 1037

Query: 827  HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
              G + +   +  +  ++   A     I PM  I   +  Q ++  A S  + + E  + 
Sbjct: 1038 EHGHVVDAPGLRPEHYEVFDCAMGERAISPMGHIRMMAAVQPFLSGAISKTVNMPEHATV 1097

Query: 883  KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937
            + ++ +Y + W MGLK     R         S       +            T  
Sbjct: 1098 EDIEKVYFEGWKMGLKALAIYRDNCKVGQPLSAAGKKKKEKEEAKGEAAPVPTRP 1152


>gi|240141792|ref|YP_002966300.1| ribonucleoside-diphosphate reductase [Methylobacterium extorquens
           AM1]
 gi|240011734|gb|ACS42959.1| ribonucleoside-diphosphate reductase [Methylobacterium extorquens
           AM1]
          Length = 1019

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 112/550 (20%), Positives = 186/550 (33%), Gaps = 96/550 (17%)

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +  GI       A L KY  G+G++++ VRG    + G  GKS G++ FL++ +  A ++
Sbjct: 7   NEGGIMDLWVREARLFKYGSGVGSNFSMVRGKDEKLSG-GGKSSGLMSFLQIGDKAAASI 65

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNT---------------------------- 469
             G   R+ A    ++  H D+E ++D +                               
Sbjct: 66  KSGGTTRRAAKMVIVDIDHPDIEAYIDWKVQEEYKVAALVTGSKVVSKHLNLILKACVNC 125

Query: 470 -------GDDRR-----RTHDMNTANWIPDLFMKRVTQ--------------NAGWTLFS 503
                   D  R     R         +PD ++KRV Q              +  W   +
Sbjct: 126 EAEGAACFDPERNPVLKREIKAARKATVPDAYIKRVVQFASQGFTSIEFPVYDTDWESEA 185

Query: 504 PDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
              VS  +          +              R   KV + + A ALW K+    + + 
Sbjct: 186 YLTVSGQNSNNSVSLTDDFLRAVEADGDWNLTARTTGKVVKTVKARALWDKIGEAAWASA 245

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617
            P + F    N        G +  SN C+E        +   CNL S NLL      +FD
Sbjct: 246 DPGLHFNTTMNDWHTCPAGGRIRGSNPCSEYMF----LDDTACNLASANLLTLVTRGRFD 301

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
              L    R    VL+  + +      +  + ++ +R +GLG       L    I Y S 
Sbjct: 302 VAMLEHVCRLWTVVLEISVAMAQFPSARIAELSYRYRTLGLGYANIGGMLMSTGIAYDSH 361

Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------------LWDQGVFP--- 722
           E   I       ++  A + S E+A E G + ++  +                G      
Sbjct: 362 EGRAICGAITAIMTGVAYATSAEMAAELGTFEAYPENAEHMLRVIRNHRRAAHGETEGYE 421

Query: 723 --------IDSIGL---LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                   +D  GL   +A      A+   +   WD      +  G RN+    IAPT T
Sbjct: 422 GLSINPVALDHAGLDCPVARQYGYDALGEAAVAAWDRALSLGELHGYRNAQASVIAPTGT 481

Query: 772 IANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH-- 827
           I  +    +  I+P +  + + K    G F ++N  + + L+        +     Y   
Sbjct: 482 IGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPSALRALGYEQAQIAEIEAYAVG 541

Query: 828 DGSIGNIERI 837
            GS+G    I
Sbjct: 542 HGSLGQAPAI 551



 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 23/177 (12%)

Query: 775 ICGVSQSIDPSYQ--NLYVKSNMSGDFTV---------VNSFLVNELKQRDLWDEAMISD 823
           I  V   ++ ++    ++ + N+  DF V         +       L         + + 
Sbjct: 566 IAAVEAGLESAFDIKFVFNRWNLGDDFLVNTLKVPAEKLADVKFELLPHLGFSARDIEAA 625

Query: 824 LKYHDG--SIGNIERIPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSL 873
            ++  G  ++     +  +   +   A          +     I   +  Q +I  A S 
Sbjct: 626 NEHVCGAMTLEGAPHLKREHYAVFDCANPCGRKGTRYLSAESHIRMMAAAQPFISGAISK 685

Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPV 928
            + + ++ + +     Y+ +W   LK     R  S  +    S L   +   +AV  
Sbjct: 686 TINMPNDATVEDCKAAYKLSWTYALKANALYRDGSKLSQPLNSALIADEDGDDAVEA 742


>gi|332087396|gb|EGI92524.1| ribonucleoside-diphosphate reductase 2 subunit alpha domain protein
           [Shigella boydii 5216-82]
          Length = 348

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 87/362 (24%), Positives = 147/362 (40%), Gaps = 52/362 (14%)

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANN 614
            ++D  N  +P    G ++ SNLC+EI   +S+ E           +  S NL +    +
Sbjct: 1   MYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAH 58

Query: 615 QFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
             D    A T+ TAVR L  V D+ +  ++   +  N    AIGLG M     L    I 
Sbjct: 59  TMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIA 118

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGL 728
           Y SPEA++  +     I++HA+  S+ LA+ER   ++ FK S +  G +           
Sbjct: 119 YGSPEALDFTNLYFYAITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQP 178

Query: 729 LAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                 EL         +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI P
Sbjct: 179 KTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHP 238

Query: 785 SYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
               + ++    +G       F+ N                               +   
Sbjct: 239 IVAKVEIRKEGKTGRVYYPAPFMTN-------------------------------ENLA 267

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902
           ++   +EI    +I++ +   + +DQ  SL L+  +  + + ++     AW  G+KT YY
Sbjct: 268 LYQDTYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYY 327

Query: 903 LR 904
           +R
Sbjct: 328 IR 329


>gi|217976380|ref|YP_002360527.1| ribonucleotide-diphosphate reductase subunit alpha [Methylocella
           silvestris BL2]
 gi|217501756|gb|ACK49165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylocella silvestris BL2]
          Length = 1230

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/560 (18%), Positives = 193/560 (34%), Gaps = 92/560 (16%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           T   S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG    
Sbjct: 185 TASTSSYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSKLRGENEK 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN---- 468
           + G  GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E+++  +      
Sbjct: 245 LSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEDYIQWKVREEHK 303

Query: 469 -----------------------TGD---DRRRTHDMNTANW----------IPDLFMKR 492
                                    D   D     + N A            +PD  +K+
Sbjct: 304 VAALVAGSKALRKALKAVARACVNCDGPGDDCFNPEKNPALKKEIKLARRAFVPDASIKK 363

Query: 493 VTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG------ 532
             Q                 W   +   VS  +          +     +          
Sbjct: 364 AIQLARQGAREIDYETFTTDWDKEAYLTVSGQNSNNSVRVTDDFLRAVEEDSDWTLTRRL 423

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
           + K  + + A ALW K+    + +  P + +    N          + +SN C+E     
Sbjct: 424 DGKAHKVLKARALWEKIGEAAWASADPGLQYHTTINDWHTCPAEAPIVASNPCSEYMF-- 481

Query: 593 SSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
              +   CNL S+NLL          D D     +R    VL+  + +     ++   ++
Sbjct: 482 --LDDTACNLASLNLLQFREPVTGAIDIDSYEHAVRLWTIVLEISVMMAQFPSKEIAVNS 539

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           + +R +GLG       L    I Y S +   I       ++  + +AS E+A+E GA+  
Sbjct: 540 YRYRTLGLGYANIGGLLMSSGISYDSDQGRAICGAFSAILTGVSYAASAEMARELGAFEG 599

Query: 711 FKGSLWDQGVFPIDS------------------IGLLAEVRDEL-AMNRTSRLPWDELKK 751
           +  +         +                   + L         A+   ++  W +   
Sbjct: 600 YGANANAMLRVMRNHKRAADGKVFGYEALSIAPVPLDHAALGAFQALGEHAKAAWSQAVA 659

Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNE 809
             +  G RN+    +APT TI  +    +  I+P +  + + K    G F ++N  +   
Sbjct: 660 LGEQHGYRNAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEG 719

Query: 810 LKQRDLWDEAMISDLKYHDG 829
           L+      + +   + Y  G
Sbjct: 720 LRSLGYGQKEIDDIIDYAVG 739



 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 20/141 (14%)

Query: 788 NLYVKSNMSGDFT---------VVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIER 836
            ++ K  +  +F           V+    N L         + +   Y  G  ++     
Sbjct: 779 FVFNKWTLGAEFLTQELKIPADKVDDPNFNLLTWLGFSRGEIETANTYVCGAMTVEGAPH 838

Query: 837 IPDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
           +      +   A          +     I   +  Q +I  A S  + + ++ +      
Sbjct: 839 LKLQHYGVFDCASPCGRTGKRYLSTESHIRIMAAAQPFISGAISKTINMPNDATVDDCKD 898

Query: 888 IYRQAWLMGLKTTYYLRSRSA 908
            Y  +W +GLK     R  S 
Sbjct: 899 AYMLSWRLGLKANALYRDGSK 919


>gi|242026167|ref|XP_002433270.1| ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
 gi|212518899|gb|EEB20532.1| ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
          Length = 237

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 101/237 (42%), Positives = 140/237 (59%), Gaps = 6/237 (2%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D + GI+  L++ A+++K +GG+G +   +R  G +I GTNG S G++P L+V N+TA 
Sbjct: 3   EDSIDGIYETLKQCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTAR 62

Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
            V+QG  KR GA   YLE WH D+ EFLDL+KNTG +  R  D+  A WIPDLFM+RV Q
Sbjct: 63  YVDQGGNKRPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQ 122

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N  W L  P     L D +G+EF   Y +YE      +    +K+ A +LW  ++    E
Sbjct: 123 NQEWCLMCPKICPGLSDCWGEEFNKLYLSYEE-----KGLYVKKVKAQSLWYAIIESQVE 177

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           TG P++ +KD CN +S QQ++G +  SNLCTEI   SS EE  +      NLL    
Sbjct: 178 TGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVKLVYYFFKNLLHIMK 234


>gi|183221073|ref|YP_001839069.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911167|ref|YP_001962722.1| ribonucleotide-diphosphate reductase subunit alpha [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775843|gb|ABZ94144.1| Ribonucleoside-triphosphate reductase, alpha subunit [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779495|gb|ABZ97793.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 1208

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/570 (18%), Positives = 194/570 (34%), Gaps = 102/570 (17%)

Query: 357 TLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
               S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +R     
Sbjct: 185 VRSASSYEHPQPHACFIQSVDDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRAANES 244

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHI--------------- 457
                GKS G++ FLK+ +  A A+  G   R+ A    L+  H                
Sbjct: 245 -LSGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVCLDMDHPDIEEFIDWKVQEEKK 303

Query: 458 ----------------DVEEFLDLRKNTGDDRR-----------RTHDMNTANWIPDLFM 490
                           D+       K +  + +           +        ++PD ++
Sbjct: 304 VASLVTGSILNNRLLNDIMSACASAKQSLGEEKAYDPAANVELKKAIQKARKAFVPDNYI 363

Query: 491 KRVTQ--------------NAGWTLFSPDEVSDLHDL--------YGKEFEI-------- 520
           KRV                   W   + + VS  +          + +  E         
Sbjct: 364 KRVIDLSKQGYKDLLFEELTTDWQSEAYNTVSGQNSNNSVRITNEFMEAVEKDLPFHLIN 423

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
             E    + D  E K  + + A  LW ++    + +  P   +    N        G ++
Sbjct: 424 RTEKENARKDGREPKAAKTLRARDLWERIANAAWNSADPGTQYHSTINEWHTCPEDGAIN 483

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDIN 639
           +SN C+E        +   CNL S NL+     +  FD +      +    +L+  + + 
Sbjct: 484 ASNPCSEYMF----LDNTACNLASANLVKFLKEDGTFDVEGYRYLNKIWTIILEISVLMA 539

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
               ++  + ++  R +GLG     S L ++ IPY S EA+ +       +   A + S 
Sbjct: 540 QFPSKEIAELSYKFRTLGLGYANLGSLLMIMGIPYDSQEAMAVTGAISSIMHMTAYATSA 599

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDS----IGLLAEVRDEL--------------AMNRT 741
           E+A+E G ++ ++ +         +          E  + L               +   
Sbjct: 600 EMAKELGPFAGYEKNKNHMLRVIRNHRRAAYNAPKEEYEGLTITPVGINPSFLPSYLLEA 659

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDF 799
           ++   D   +  +  G RN+    IAPT TI  +    +  I+P +  + Y K    G F
Sbjct: 660 AKEDSDRALELGEQYGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKYKKLAGGGYF 719

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            ++N  +   LK+         + + Y  G
Sbjct: 720 KIINQSVPAALKKLGYSQAEQDAIVNYCKG 749



 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           ++   +  D ++ NS   N L+      + +     Y  G+  I N   I +    +   
Sbjct: 800 FLAKTLGIDPSLYNSMGFNLLETLGFSADEITQANDYVCGTMTIENAPFIKEKDLPVFDC 859

Query: 848 AFE--------IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           A +        +     I   +  Q +I  A S  + L  E + + +   Y  +W + +K
Sbjct: 860 ANKCGKYGKRFLSYQSHIRIMAAAQPFISGAISKTINLPEEATIEDVKNAYLMSWKVMIK 919

Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
                R  S  S   +++  +   +         SS        +
Sbjct: 920 ANALYRDGSKLSQPLNSVFQLLSAVGEDEEELQTSSAPKTVTEVA 964


>gi|168056527|ref|XP_001780271.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668325|gb|EDQ54935.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 161

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+N+L    LW   + + + YH+GSI  I+ IPDDLKKI+ T +EI    +++
Sbjct: 1   FVVVNKHLLNDLTNTGLWTHDLKNQVIYHNGSIQQIDVIPDDLKKIYRTVWEIKQRSIVD 60

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +ID++QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A+   K T+ 
Sbjct: 61  MAAARGAFIDKSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAASDAIKFTMD 120

Query: 918 GVDGKLN---AVPVTDPNSSTHSLGIPSSCTSDTECEV 952
               K        V   N       +  S  +  EC  
Sbjct: 121 QSSIKSKQETPAAVVSNNLEEKMSQMVCSLENKDECMS 158


>gi|220935836|ref|YP_002514735.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997146|gb|ACL73748.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1137

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/352 (23%), Positives = 140/352 (39%), Gaps = 34/352 (9%)

Query: 580  HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDN 634
              ++ C E  L         C LGS++L     +       FD+D     +    R+LDN
Sbjct: 696  FHTHNCGEQMLPPY----GACLLGSVDLTRFVQHPFTGKLRFDWDTYREVVAVFTRMLDN 751

Query: 635  VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            V++I+   + +  ++    R  G+G +G  SAL ++ I Y SPEA    + +   ++   
Sbjct: 752  VVEIHGLPLAQQAEALERTRRHGMGFLGLGSALAMMGIRYDSPEAAAFTERAARELALTG 811

Query: 695  ISASVELAQERGAYSSFKGS-------------LWDQGVFPIDSI-GLLAEVRDELAMNR 740
                +ELA+E+G                     L + G+   D + G +   R    M R
Sbjct: 812  WRTGLELAREKGPAPLMYERFTVTEHLLARYPALAEDGIRVGDVLPGRVLHARYSPYMRR 871

Query: 741  TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV--SQSIDPSYQNLYVKSNMSGD 798
             + L    L   +   G R ++  AIAPT TIA   G   S  I+PS+ + Y+++ +  D
Sbjct: 872  IAGLD-PALVAALAEEGARFTHHSAIAPTGTIALSFGNNVSNGIEPSFAHTYLRNILGRD 930

Query: 799  FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                      +      ++      L   D      ++ P  L +   TA +I P   + 
Sbjct: 931  GA------TRDTVPVTAYELLAWRALVDPDAD-PEAKQGPHRLPEAFVTAGDIAPRAHLA 983

Query: 859  SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
              +  Q WID A S  + +  +   +    +YR+A  +GLK     R   A 
Sbjct: 984  IQAAAQPWIDAAISKTINVPTDCPFEDFRDLYREAHALGLKGCTTYRLNPAA 1035



 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 25/314 (7%)

Query: 293 FEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETE---KEKRAVEFYNLLS 347
            +     +   +Y L    G  +E  P     RVA  LA  E     +E     F     
Sbjct: 16  LQPAARDVWDRKYRLRDATGRPLEDTPAETLARVARALADVEATPALREHWRERFL-WAL 74

Query: 348 SFHFMCSTPTLFNSGTRHPQ----LSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGN 402
           +   + +   L N+G R  +      +C ++ T+ D L  I G L+E  +  +   G+G 
Sbjct: 75  NHGALPAGRILANAGARDHKRGTSTINCTVSGTIHDTLDEILGKLREAGLTLQSGAGIGY 134

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           +++ +R  GA + G   +S G + F+ V +     +   G R+GA  A     H DV EF
Sbjct: 135 EFSTLRPKGAWVAGAGARSSGPLSFMDVYDQMCRTIASAGDRRGAQMATFHIGHPDVLEF 194

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP----------DEVSDLHD 512
           ++ ++    +  R    N +  +PD FM  +   A W L  P           ++ D   
Sbjct: 195 IEAKR----EPGRLRQFNLSLLVPDAFMAALDAGADWPLAFPLSPAEQARTGADLQDPKQ 250

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           +  + +            R   +V + I A ALW +++   ++   P + F D  N  + 
Sbjct: 251 VVWRHWPETEGYITDGHGRVACRVQQWIPAAALWEQVMRATYDHAEPGVIFIDRVNAENN 310

Query: 573 QQHVGVVHSSNLCT 586
                 + ++N C 
Sbjct: 311 NGFCESIRAANPCV 324


>gi|108515096|gb|ABF93321.1| ribonucleotide reductase large subunit [Oryctes rhinoceros virus]
          Length = 737

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 130/728 (17%), Positives = 256/728 (35%), Gaps = 111/728 (15%)

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
           R    ++ + D+  L + L  +RDF +   G+++L +RY L       E  Q   +R+A 
Sbjct: 78  RKWFPNIGNADIDVL-SWLDTDRDFIYSSHGMRLLKNRYLL-----PAEPIQYCMLRIAK 131

Query: 327 GLALK--------------ETEKEKRAVEFYNLLSSFHFMCSTPTLF---NSGTRHPQLS 369
             + +              +    +     Y++LS   +M ++  L    N+        
Sbjct: 132 LFSRRNSSNNSSSSDGNSIDDINFQLWRLMYDVLSCG-YMHTSSILADADNADKNIVPGE 190

Query: 370 SCFLTTVPDDLY-GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           +C L     D        + E   L     G+G   + V   G  +        G   F 
Sbjct: 191 ACRLLVCNPDYDRAFVNQINEICNLISLGVGVGMSASTVPLHGYAV--NGKIRGGFKSFA 248

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +  +          +RK  +  Y+E  +  + E  +LR    +      ++     +PD 
Sbjct: 249 RKLDSCN--YLSIYERKPKIAIYIEMHNNTIYEAFELRNPLTN---HLENVFVGIMVPDY 303

Query: 489 FMKRVTQNAGWTLF---SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           F++    +  W LF   +  +   L +  G E++  Y+ +             K+S+ AL
Sbjct: 304 FIECYENDEDWYLFPGDAKLDGRTLCEFTGDEYKRMYKRFVEANL-----YTNKVSSSAL 358

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
              ++T + ETG P++ + D  N  S  +H+G + + NLC EI   +S  +++ C L S+
Sbjct: 359 MDDLVTCISETGSPYVVWSDNVNRFSNHKHLGKIKTLNLCAEIANYASVGKSSSCTLMSV 418

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665
           N   +      D               D   +       + + +  +  A  +G +   +
Sbjct: 419 NFAMYRE--FPDVLDRVYAFVEEHSEFDAGYNGFHRAASEFQHATMSKYAYAMGFVATWA 476

Query: 666 ALHLLHIP------------------YASPEAVEIADESMEFISFHAISASVELAQERG- 706
               + +                       + V++  E  E +    I +S + A+    
Sbjct: 477 LNMFMGVTRKQRELGVSPLGAYDMAIMDGVDPVKVIAELSEAMYKGCIYSSCKFARMYDV 536

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
             + +KGS + +G+       LL + R      +     W +  + ++T  M NS   A 
Sbjct: 537 ECAYYKGSPFSEGIP----QWLLRDER------KIITTDWTKTCELMRTK-MANSQLTAQ 585

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
           APTAT + + G ++S+      +  + + +G          N+L    L  + ++     
Sbjct: 586 APTATTSMLVGEAESVTIPMSIVMARESENGR---------NDLICYGLLYKLLME---- 632

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886
                      P  L        +ID   L+   +R   +IDQ+QS  ++    S + + 
Sbjct: 633 --------PAEPLHLD------NDID-RQLL-MYARSAPFIDQSQS-TMFSIVLSRQNIL 675

Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
            +    + + LKT  YY  +          +      +   P      S+         +
Sbjct: 676 NLIMDTYYLKLKTAIYY--TLPKQ------INNTLTIVRQTPQPQKRESSTDCQFSPKRS 727

Query: 946 SDTECEVC 953
               CE C
Sbjct: 728 RRPSCEAC 735


>gi|89054963|ref|YP_510414.1| ribonucleotide-diphosphate reductase subunit alpha [Jannaschia sp.
           CCS1]
 gi|88864512|gb|ABD55389.1| ribonucleoside-diphosphate reductase class II [Jannaschia sp. CCS1]
          Length = 1236

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 147/439 (33%), Gaps = 68/439 (15%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT---HDMNTANWIPDLFMKRVTQNAG 498
                 V  Y +  H  +E F     +   +   +    + N +  + D F+K V  +  
Sbjct: 369 ETYVKRVLDYAKQGHTSIE-FPTYDTDWDSEAYNSVSGQNSNNSIRVTDAFLKAVENDDD 427

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           W                           +  +R + KV + I A  LW K+    +    
Sbjct: 428 W---------------------------QLINRRDGKVSKTIKARDLWEKVGHAAWACAD 460

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618
           P I + D  N        G +  SN C+E        +   CNL S+NLL  +A   FD 
Sbjct: 461 PGIQYHDTVNAWHTCPEDGAIRGSNPCSEYMF----LDDTACNLASMNLLTFYAGGTFDA 516

Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
           +      R     L+  + +     ++  + ++  R +GLG       L      Y S E
Sbjct: 517 ESYMHACRLWTLTLEISVMMAQFPSKEIAQRSYDFRTLGLGFANIGGLLMNTGHSYDSAE 576

Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------ 726
              +       ++  A + S E+A E G ++ F  +         +              
Sbjct: 577 GRALCGSLTAIMTGVAYATSAEIASELGPFAGFAKNREHMLRVMRNHRAAAYGKTDGYEE 636

Query: 727 ------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779
                  L      +  +   ++  WDE     +  G RN+    IAPT TI  +    +
Sbjct: 637 VNVNPVALDHINCPDQTLVELAKQAWDEALTLGEAHGYRNAQATVIAPTGTIGLVMDCDT 696

Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIER 836
             I+P +  + + K    G F ++N  +   L+        +   + Y    G+IG    
Sbjct: 697 TGIEPDFALVKFKKLAGGGYFKIINQSVPAALEGLGYASSQIEEIIAYAVGHGTIGQAPG 756

Query: 837 I-----------PDDLKKI 844
           I           P++++KI
Sbjct: 757 INHTSLIGHGFGPEEIRKI 775



 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 11/151 (7%)

Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAF--------EID 852
           N    + L+        + +   +  G+  +     + D+   +   A          + 
Sbjct: 811 NDPTFDLLRHLGFTKADIEAANDHVCGTMTLEGAPFLKDEHLPVFDCANPCGKKGKRYLS 870

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
               I   +  Q +I  A S  + +    + +     Y  +W +G+K     R  S  S 
Sbjct: 871 VEAHIHMMAASQSFISGAISKTINMANHATIEDCQKAYELSWSLGVKANALYRDGSKLSQ 930

Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
             +     D    A  +    +   +  +  
Sbjct: 931 PLAAALVEDDDDAAEILETGTAHEKAQVLAE 961


>gi|218128620|ref|ZP_03457424.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697]
 gi|217989222|gb|EEC55536.1| hypothetical protein BACEGG_00190 [Bacteroides eggerthii DSM 20697]
          Length = 587

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 120/623 (19%), Positives = 231/623 (37%), Gaps = 112/623 (17%)

Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR--AVEFYN 344
           R F  + L  ++  ++Y +  + G+  E  P+    R+A  +A  E +      + E + 
Sbjct: 17  RYFQGDELAARVWVNKYAVKDSFGNIYEKSPEDMHWRIANEVARIEAKYPNALSSEELFG 76

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQ---LSSCFLTTVP---DDLYGIFGALQENAMLAKYSG 398
           L + F ++    +       + Q   LS+CF+  V    D    IF   +E   L K  G
Sbjct: 77  LFNHFKYIVPQGSPMTGIGNNYQVASLSNCFVIGVDGEADSYGAIFKVDEEQVQLMKRRG 136

Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
           G+G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   +   H D
Sbjct: 137 GVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTR-EVAQDGRRGALMLSVSIKHPD 195

Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
            E F+D +   G    +    N +  + D FM+       +    P + +D         
Sbjct: 196 SEAFIDAKMTEG----KVTGANVSVKLTDAFMQAAIDGKPYVQQYPIDATDPV------- 244

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
                              ++I+A  LW+K++   +++  P + F D     S       
Sbjct: 245 -----------------FKKEINATDLWKKIVHNAWKSAEPGVLFWDTILKESVPDCYAD 287

Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLD 633
           +    + T             C L +INL ++  N       FD+D     +  A R++D
Sbjct: 288 LGYRTVSTNPCGEIPLCPYDSCRLLAINLYSYVVNPFKPDAYFDFDLFKKHVALAQRIMD 347

Query: 634 NVIDINCHTIEKAK------------------------KSNHTHRAIGLGLMGFQSALHL 669
           ++ID+    IE+                          K +   R  G+G+      L  
Sbjct: 348 DIIDLELEKIERIMAKIDADPESEDVKHTESVLWQKIYKKSGQGRRTGVGITAEGDMLAA 407

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           L + Y + EA E A++  + ++  A  +SV +A+ERGA+  +                  
Sbjct: 408 LGLRYGTEEATEFAEQVHKTVALSAYRSSVVMAKERGAFEVYD----------------S 451

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
              ++   +NR  R    EL + +K  G RN  C+ IAPT T + +   +  I+P +  +
Sbjct: 452 EREKNNPFINR-LREADPELYEEMKKYGRRNIACLTIAPTGTTSLMTQTTSGIEPVFLPV 510

Query: 790 YVKSNMS-------------------GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           Y +                        ++ V +   V  ++          +        
Sbjct: 511 YKRRRKVNPNDSNVHIDFVDETGDAFEEYIVFHPKFVTWMEAEGYDPAKRYTQ------- 563

Query: 831 IGNIERIPDDLKKIHATAFEIDP 853
              I+ + +      AT+ ++D 
Sbjct: 564 -EEIDALVEKSPYYKATSNDVDW 585


>gi|21673413|ref|NP_661478.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           tepidum TLS]
 gi|21646513|gb|AAM71820.1| ribonucleotide reductase family protein [Chlorobium tepidum TLS]
          Length = 1129

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 126/619 (20%), Positives = 218/619 (35%), Gaps = 103/619 (16%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------ 362
           E  QAF+  V   L  +       + +++N    F +  + P   +              
Sbjct: 90  EDAQAFYDEVVYMLLAQMAAPN--SPQWFNTGLQFAYGINGPAQGHFYVDPETGEIRESE 147

Query: 363 --TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
                PQ  +CF+ +V D   +  GIF      A + K+  G G +++ +RG G      
Sbjct: 148 DAYSRPQAHACFIQSVKDDLVNEGGIFDLAVREARVFKFGSGSGTNYSNLRGSGEK-LSG 206

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-- 474
            G S G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +    D     
Sbjct: 207 GGSSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWKAKEEDKVASM 266

Query: 475 ------------------------RTHDMNTANWIPDLFMKRVTQN-------------- 496
                                   R  +      I +   + V  +              
Sbjct: 267 VAGSKICSRFLKAIVDEALKGGTDRQENEMLNTLIKNALHRGVPMSYILRVLALVEQGYT 326

Query: 497 ----AGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQA--DRGEIKVFRKISA 542
                 +      E          +       EF  A +N E     +R   K  R + A
Sbjct: 327 TLDFEEYDTHYESEAYQTVGGQNSNNSVRVTNEFMKAVQNDEMWVLRERTTGKEARAVRA 386

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   ++   P + F    N        G +++SN C+E        +   CNL
Sbjct: 387 RDLWEKIVMSAWKCADPGLQFDSTINEWHTCPKSGRINASNPCSEYMF----LDDTACNL 442

Query: 603 GSINLLAHFANNQFDYD--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            S+NL              +L         VL+  + +     +   + ++  R +GLG 
Sbjct: 443 ASLNLAHFLDEETGKIKITELQHASALWTVVLEISVLMAHFPSKDIARLSYEFRTLGLGF 502

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG------- 713
                 L +L IPY SP A+ IA      ++  A   S ++A+E GA++ ++        
Sbjct: 503 ANLGRVLMVLGIPYDSPRALAIAGGIAAIMTGQAYVTSADMAKELGAFARYRENSDDMLR 562

Query: 714 -----SLWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSN 762
                S   +     +  GL+ + R          +   +   WDE  K+ K  G RN+ 
Sbjct: 563 VIRNHSRAARNSSEEEYEGLVVKPRGIDSEYCPKELFEAAGKVWDEALKKGKKYGFRNAQ 622

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              IAPT TI  +    +  I+P +  + + K    G F +VN  +   L +    D+ +
Sbjct: 623 VSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALARLGYSDKQI 682

Query: 821 ISDLKYH--DGSIGNIERI 837
               KY    G++     I
Sbjct: 683 EEIEKYCKGHGTLRGCPGI 701



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 12/161 (7%)

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA--- 848
           ++      +N    + L +    +E + +   Y  G+  I     +  +   +   A   
Sbjct: 745 SLGFTEEQLNEPSFDMLSELGATEEDIEAANDYVCGTMMIEGAPHLKPEHLPVFDCASTC 804

Query: 849 -----FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
                  I+ M  +   S  Q +I  A S  + +    +  ++  +Y  AW   +K    
Sbjct: 805 GRKGKRYINHMAHVRMMSAVQPFISGAISKTVNMPSSATTAEIGDVYEAAWQSMVKAITI 864

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
            R  S  S   + +     +   + +        + G    
Sbjct: 865 YRDGSKLSQPLN-ISNASPQDEVIMLGTEEDLDETKGPKEV 904


>gi|134303480|ref|YP_001111349.1| ribonucleotide reductase large subunit [Gryllus bimaculatus
           nudivirus]
 gi|134022866|gb|ABO45415.1| ribonucleotide reductase large subunit [Gryllus bimaculatus
           nudivirus]
          Length = 683

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/717 (18%), Positives = 241/717 (33%), Gaps = 96/717 (13%)

Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288
             ++         ++   + +    E     ++  VK        ++ +       L Y 
Sbjct: 3   YLKLERYFIDNNIQSKIEKKKHEKYENIYNQLKNDVKTLQCFRKTVNIEQTKYPFLLTYI 62

Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
            ++ F    +Q+L +RY         E  Q  F R+A            R +  Y  LS+
Sbjct: 63  NNYIFTGAAIQLLQERYLNKG-----ENIQEGFARIASYFCDNSNVPLWRNI--YKCLSA 115

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS----------- 397
            + + S+       T     ++    T  +D      A     M  KY+           
Sbjct: 116 TNILVSSVIARYQDTYSSSYATVAGVTRDEDTTTKGKACLLAVMPEKYNEDALRLMWKLF 175

Query: 398 ----GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
                G+G              G      G+  FL + +       +  KR+     Y+ 
Sbjct: 176 DYLAKGIGIGLCIDNVPKYGSDGYEYIKGGIHEFLDLLSHVNG--VRITKRESNFAVYIS 233

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-LHD 512
            +   + + L++R+   +      ++  A  IP++FMK+V  N  W LF   E       
Sbjct: 234 IYRDTLYDVLNIRQRNKNKLL---NVFPAVKIPNMFMKKVRNNEAWYLFDVTESQLLDKT 290

Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
              KEFE  YE +  +     +   RKI     ++ ++  +  TG P+I F D  N  + 
Sbjct: 291 KNEKEFEELYETFVSEQKYTNMYESRKI-----FKDIIKNILMTGSPYIIFIDNVNKFNN 345

Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------------QFDY 618
            +H+G + + NLC+EIT   + +  + C L S+N+                       ++
Sbjct: 346 IKHLGKIKTLNLCSEITNYCNEDVISTCLLLSVNVANFKHQWDLVSSLENILSKEFNVNF 405

Query: 619 DKLASTIRT-----AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673
                 I              ++             +   R IG+  +G   A+ +    
Sbjct: 406 KDDDFVIELDETSKLCWSYCKIMGFLATVCLNYFLGSSKRREIGVSPLGVYDAIIISK-- 463

Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEV 732
             + + +       E +    + ASV  +++ G    +F+ S + +G F  D   L  + 
Sbjct: 464 --TDQPLFFCKLISESLYKGCVLASVAWSKKFGIRCKNFENSCFSRGEFQFDLRNLTYKN 521

Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI-DPSYQNLYV 791
                        W  LK+ V   GM NS     APTAT + +  V+ S+ +P     ++
Sbjct: 522 I----------SDWSSLKRDVLLYGMANSLLTCQAPTATTSLLADVTPSVTEPHDCCDFI 571

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851
               S     ++  + N   + ++        L     S           K ++  +   
Sbjct: 572 CREHSFRSLSLSYVMKNFFIKNNVEMINFSKKLFQLKLS-----------KNLYKVSL-- 618

Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907
                         +IDQ+QS+ L     S  +L      A+    KT  YY+  +S
Sbjct: 619 -------------PYIDQSQSVILN-GNFSSLELMEYLIYAYNNDFKTALYYINLKS 661


>gi|157310980|ref|YP_001468976.1| putivate ribonucleotide reductase [Corynebacterium phage P1201]
 gi|95832128|gb|ABF57528.1| putivate ribonucleotide reductase [Corynebacterium phage P1201]
          Length = 865

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 159/400 (39%), Gaps = 58/400 (14%)

Query: 535 KVFRKISAVALW--RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT--- 589
           K    + ++  +    +     E GH                +   +   +  +E +   
Sbjct: 502 KSHATVHSIEFYGVEDVYDPTVENGH------SVIYNGLVTGNCSEIFQPSSPSEFSEDS 555

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-IDINCHTIEKAKK 648
             + +     CNLGS+N+    A    D D   + ++ A + L+ V +     +     +
Sbjct: 556 FFTKTGRDISCNLGSLNVARLSAL---DTDDFHTAVKDAYKFLNQVAVQTEIGSSPTVVR 612

Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA- 707
            N   RAIGLG M    AL  L + Y S EA +  +  M  ++F  ISASV+ A+E G+ 
Sbjct: 613 GNRESRAIGLGQMNLHGALIELGLDYNSQEARDWFEWYMMRVTFSVISASVDKAEEMGSG 672

Query: 708 YSSFKGSLW--------DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           +   +GS W        D+ +  ID I       +   +       W  L +R +  G+ 
Sbjct: 673 FKGAEGSRWGDIISGHRDRAMALIDRITASGNAMENSDV--AWSYEWLRLLERFRLHGIY 730

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           N N  AI PT +I+ I   + SI P    + V+            +         + +E 
Sbjct: 731 NQNLQAIPPTGSISYINHATASIHPVTSPVEVRKEGKLGRVYYPQY--------GVTNE- 781

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879
                     ++ +I+           +A+ I P  +I+  +    W+DQ  SL L+  +
Sbjct: 782 ----------NVESID-----------SAYAIGPNPIIDMYAVASPWVDQGMSLTLFFPD 820

Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             + + ++     A   GLK+ YY+R+ SA SVE + ++G
Sbjct: 821 TATTRDINRAQIYAHKKGLKSLYYIRT-SAKSVEGTEVEG 859



 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 158/367 (43%), Gaps = 15/367 (4%)

Query: 227 KLRRE---VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283
           +L ++   V     +   K T      L  +      E  +  + +       DL  L  
Sbjct: 23  QLHKDKDSVRAYFLEHVNKNTVF-FHSLEEKVDHLTEEVQLWDKDVVLRYGFEDLKRLMK 81

Query: 284 DLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
                +     Y+G    Y+ Y L  N      E  +   +  A+  +         A  
Sbjct: 82  QAYGHKFRFKTYMGALKFYNSYALKTNDGKRYYERYEDRVVLTAIHYSEDFE----HAES 137

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400
             +L+    F  +TPT  N+G     +  SCF+  V D +  I   +Q++  L+K  GG+
Sbjct: 138 LVDLIIKGIFQPATPTFLNAGLLDAGKPVSCFILDVQDTMGSIGRIVQDSLQLSKRGGGV 197

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G  ++ +R  GA I G  G++ GVIP +K+  D+    NQ G R+GA   YL   H D+ 
Sbjct: 198 GIGFSNLREAGAPIKGREGQASGVIPVMKILEDSFSYSNQLGARQGAGAVYLNAHHPDIL 257

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            FLD ++   D++ R   ++    +PD+  +   ++    LFSP    D++ +YGK    
Sbjct: 258 AFLDTKRENADEKIRIKTLSLGVIVPDVTFRLAKESEPMALFSP---YDINKVYGKSLSE 314

Query: 521 AYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579
                       + ++ +  I A  L++ +  + FE+G+P++ F D  N  +P  ++G +
Sbjct: 315 FSVTEMYDTWLKDDRIAKTFIDARKLFQTIAEVQFESGYPYLMFDDAANRGNPAPNIGRI 374

Query: 580 HSSNLCT 586
            SSNLC 
Sbjct: 375 KSSNLCV 381


>gi|158422892|ref|YP_001524184.1| ribonucleotide-diphosphate reductase subunit alpha [Azorhizobium
           caulinodans ORS 571]
 gi|158329781|dbj|BAF87266.1| ribonucleotide reductase large subunit [Azorhizobium caulinodans
           ORS 571]
          Length = 1241

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 153/435 (35%), Gaps = 72/435 (16%)

Query: 458 DVEEFLDLRKNTGDDRRRT--HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           D++  +      G+        + N +  + D F++ V ++A W                
Sbjct: 374 DIDVAIYDTDWDGEAYLTVAGQNSNNSVRVTDDFLRAVEEDADW---------------- 417

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                          R + KV + + A  LW K+ +  +    P I F    N       
Sbjct: 418 -----------NLIRRTDGKVHKTVKARELWDKIGSAAWHCADPGIQFHTTINDWHTCPS 466

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDN 634
            G + +SN C+E        +   CNL S+NLL       +FD +     +R    VL+ 
Sbjct: 467 GGEIRASNPCSEYMF----LDDTACNLASLNLLQFRDSEKRFDVESFEHAVRLWTVVLEI 522

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +      +  + ++ +R +GLG       L    IPY S E   I       ++   
Sbjct: 523 SVLMAQFPSRRIAELSYEYRTLGLGYANIGGLLMTAGIPYDSAEGRAICGAISAIMTGIC 582

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDEL 736
            + S E+A+E G + +++ +         +                     L      + 
Sbjct: 583 YATSAEMAKELGPFPAYEQNATSMLRVIRNHRRAAYGEAKGYEGLSIAPVPLDHASCKDE 642

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794
            +   ++  WD+     +  G RN+    IAPT TI  +    +  I+P +  + + K  
Sbjct: 643 RLVAHAKAAWDKALADGEKHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLA 702

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPD-DLKKI-H---- 845
             G F ++N  +   L+    + EA I++++ +    GS+     I    LK        
Sbjct: 703 GGGYFKIINGAVPEALRTLG-YSEAQIAEIEAYAVGHGSLAQAPAINHGSLKAKGFDAEA 761

Query: 846 --------ATAFEID 852
                    TAF+I 
Sbjct: 762 IAKAEAAVKTAFDIK 776



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 808 NELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATA---------FEIDPMWL 856
           + L         + +   +  G  ++     +  +   +   A         F +     
Sbjct: 806 DLLSHLGFSKADVEAANVHVCGAMTLEGAPYLKAEHLPVFDCASPCGRIGKRF-LSVESH 864

Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           I   +  Q +I  A S  + + +E + +     Y  +W + LK     R  S 
Sbjct: 865 IRMMAAAQPFISGAISKTINMPNEATVEDCLSSYLLSWRLALKANALYRDGSK 917


>gi|167567021|ref|ZP_02359937.1| hypothetical protein BoklE_30966 [Burkholderia oklahomensis EO147]
          Length = 537

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/585 (18%), Positives = 202/585 (34%), Gaps = 73/585 (12%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIFGALQENAMLAKY 396
           Y  L +               +   ++SCF+  +            +  A+ E  +    
Sbjct: 1   YRNLLNGALGAGRIMARAGAAQDQTMASCFVHPIRAPAALTRFHPDLDRAIDEARLTLAM 60

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
            G +G D++ +    A        S GV   L   +       +   R+ A  A L   H
Sbjct: 61  GGDVGYDFSAIPPASARPEAEQSTSPGVCAALDRFDRIGAQAGERDGRRRAQLAVLRCDH 120

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
            D+  F+  ++       R   +  A  + D FM+ + Q+  WTL  P    D       
Sbjct: 121 PDLLAFVAAKRGHA----RWETLELAVAVTDAFMQAIEQDRPWTLRHPAPPHDAAS---- 172

Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576
                               +  + A  LWR+++    +   P + F D  +  +P +  
Sbjct: 173 ---------GALPAADGAWTYATVPARHLWREIVAATRDGEGPGLVFVDAIDAANPLRGR 223

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAV 629
             + +++ C    L         C LG+++L     N         FD+    + +R  V
Sbjct: 224 ERIDATSPCGAQPLPPY----GSCMLGAVDLSRFVRNPFGAGGEPRFDFAAFDAAVRVEV 279

Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689
           R+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP A E+       
Sbjct: 280 RLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMTRYIASD 339

Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           +  HA +AS ELA ERGA+                    L +    L            +
Sbjct: 340 LRNHAYAASAELAAERGAFP-------------------LCDRYAHLDALHAGPPLPHAV 380

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
              ++  G+RNS+  + AP   ++   G   S  I+P+   +  ++  +G        + 
Sbjct: 381 CHAIERDGLRNSHLTSFAPVVGVSLAFGDNCSPGIEPARAWIEHRTVRTGTTG--APVMR 438

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
            E     L+       +                L    AT  ++ P   +   +  Q ++
Sbjct: 439 AENHAHRLFRALRGERVA---------------LPDYFATDADVAPGDRLAMRAALQPYV 483

Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
           D   +  L L    S ++++ +   AW   LK+    R+  A   
Sbjct: 484 DAGVANTLTLAGHHSLEEINALLFGAWRAKLKSVAIRRADVARDA 528


>gi|168055674|ref|XP_001779849.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668761|gb|EDQ55362.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 160

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 5/158 (3%)

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
           F VVN  L+N+L    LW   + + + YH+GSI  I+ IPDDLK I+ T +EI    +++
Sbjct: 1   FVVVNKHLLNDLTNTGLWTHDLKNQVIYHNGSIQQIDVIPDDLK-IYRTVWEIKQRSIVD 59

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +ID++QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A+   K T+ 
Sbjct: 60  MAAARGAFIDKSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAASDAIKFTVD 119

Query: 918 GV---DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
                  +     V   N       +  S  +  EC  
Sbjct: 120 QSSIKSKQETPAAVVSNNLEEKMSQMVCSLENKDECMS 157


>gi|145220004|ref|YP_001130713.1| ribonucleotide-diphosphate reductase subunit alpha
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206168|gb|ABP37211.1| ribonucleoside-diphosphate reductase class II [Chlorobium
           phaeovibrioides DSM 265]
          Length = 1149

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 120/588 (20%), Positives = 211/588 (35%), Gaps = 107/588 (18%)

Query: 363 TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V D   +  GIF      A + K+  G G +++ +R  G       G
Sbjct: 175 YSRPQAHACFIQSVNDDLVNEGGIFDLAIREARVFKFGSGSGTNYSNLRSSGEK-LSGGG 233

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++ FLK+ + +A A+  G   R+ A    ++  H DVE+F++ +    D   +   
Sbjct: 234 SSSGLMSFLKIFDSSAGAIKSGGTTRRAAKMVIIDIDHPDVEKFIEWKAREED---KVAS 290

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---------------------- 516
           +   + I   F++ +   A            L  L                         
Sbjct: 291 LVAGSRICSRFLQAIVAEALENGADRTRNPKLQRLIENALQRAVPMNYIIRVLALVEQGF 350

Query: 517 ---EFEIAYENYERQAD--------------------------------RGEIKVFRKIS 541
              +F+    NYE +A                                 R   K  R ++
Sbjct: 351 TSLDFDEYDTNYESEAYQTVGGQNSNNTVRVTNEFMKAVENDDIWTLKERTTGKGARAVN 410

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW+K+L   ++   P + F    N        G +++SN C+E        +   CN
Sbjct: 411 ARDLWQKILLSAWKCADPGLQFDTTINEWHTCPKSGRINASNPCSEYMF----LDDTACN 466

Query: 602 LGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           L S+NL+      +     D+L          L+  + +     ++  + ++  R +GLG
Sbjct: 467 LASLNLIHFLDEKSGTIKVDELRHAAGLWTIALEISVLMAHFPSKEIARLSYEFRTLGLG 526

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS----- 714
                + L +L IPY SP+A+ +A      I+  A   S ELA++ G +  +  +     
Sbjct: 527 FANLGTVLMVLGIPYDSPKALALAGSISALITGQAYITSAELARDLGPFDGYAANSKEML 586

Query: 715 -------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNS 761
                           +  GL  + R          +       WDE  ++ K  G RN+
Sbjct: 587 RVIRNHQRAAHNKSQEEYEGLSVKPRGIDSEYCSNELFAAVGKVWDEALQKGKKHGFRNA 646

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
               IAPT TI  +    +  I+P +  + + K    G F +VN  +   L +     + 
Sbjct: 647 QVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALGRVGYSPKQ 706

Query: 820 MISDLKYHDGS--IGNIERI-----------PDDLKKI---HATAFEI 851
           +    +Y  GS  +     I            + +K +    AT F+I
Sbjct: 707 IEEIERYCKGSGTLSGCPTINRQWLITRGFTDERIKAVEEQLATVFDI 754



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 11/127 (8%)

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATAFE 850
            ++      +N    N L+     +E   +   Y  G+  I     +  +   I   A  
Sbjct: 769 ESLGFTDAQLNDPDFNMLEALGATEEDAEAANDYICGTMTIEGAPHLKLEHLPIFDCASR 828

Query: 851 --------IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTY 901
                   I+ M  +   S  Q ++  A S  + +    +  ++  +Y   W   +K   
Sbjct: 829 CGRKGQRFINHMAHVHMMSAVQPFVSGAISKTVNMPSTATVDEISEVYLSGWHHMIKAIT 888

Query: 902 YLRSRSA 908
             R  S 
Sbjct: 889 VYRDGSK 895


>gi|153820501|ref|ZP_01973168.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           cholerae NCTC 8457]
 gi|126508954|gb|EAZ71548.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           cholerae NCTC 8457]
          Length = 277

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 44/302 (14%)

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
            VR LD ++D   + +  A++S+   R +G+G++ +   L    + Y+   A  +   + 
Sbjct: 1   MVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNGVKYSDGSANGLTHRTF 60

Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
           E + +H + AS++LA+E+G    F  + + +G+ PID+     +    L         WD
Sbjct: 61  EAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID----LVCAEPLHYDWD 116

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
           +L+  +   G+RNS   A+ P+ T + I   +  I+P    + VK++  G    V     
Sbjct: 117 KLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSVKASKDGILKQVVPEFT 176

Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867
              +     +  ++ ++  +DG +                                QK++
Sbjct: 177 RLKE-----NYELLWNIGSNDGYLH--------------------------LVGIMQKFV 205

Query: 868 DQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LRSRSATSVEKSTLKG 918
           DQA S N   D       +   KKL      A+  G+KT YY   R  +      +T+K 
Sbjct: 206 DQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHNTRDGAKDEQTDATVKV 265

Query: 919 VD 920
            +
Sbjct: 266 QE 267


>gi|110598403|ref|ZP_01386676.1| Ribonucleoside diphosphate reductase, B12-dependent [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340012|gb|EAT58514.1| Ribonucleoside diphosphate reductase, B12-dependent [Chlorobium
           ferrooxidans DSM 13031]
          Length = 1115

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 121/624 (19%), Positives = 230/624 (36%), Gaps = 111/624 (17%)

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS------------ 361
           +E  Q F+  VA  +  +       + +++N   +F +  + P   +             
Sbjct: 83  VEDGQTFYDEVAFMILKQMGAPN--SPQWFNTGLNFAYGTTGPAQGHYHVDPETREVKES 140

Query: 362 --GTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416
                 PQ  +CF+ +V D   +  GIF      A + K+  G G +++ +R  G     
Sbjct: 141 EDAYSRPQAHACFIQSVSDDLVNEGGIFDLAIREARVFKFGSGSGTNYSNLRSGGEK-LS 199

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475
             G S G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +     +  +
Sbjct: 200 GGGSSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKFIEWK---AKEEDK 256

Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK------------------- 516
              +   + I   F++ + + A        E   L+ L                      
Sbjct: 257 VASLVAGSRICSRFLQAIVEEALLNGSDRKENPALNRLIQNALSRAVPMSYIIRVLALVE 316

Query: 517 ------EFEIAYENYERQAD--------------------------------RGEIKVFR 538
                 +F+    NYE +A                                 R   K  R
Sbjct: 317 QGFTSLDFDEYNSNYESEAYQTVGGQNSNNTVRVTNEFMKAVENDDIWQLRQRTTGKNVR 376

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
            + A  LW K+L   ++   P + F    N        G +++SN C+E        +  
Sbjct: 377 AVKARDLWEKILLSAWKCADPGLQFDTTINEWHTCPASGRINASNPCSEYMF----LDDT 432

Query: 599 VCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
            CNL S+NL+        +    +L         VL+  + +     ++  + ++ +R +
Sbjct: 433 ACNLASLNLIHFIDEESGRVKIRELQHASALWTIVLEISVLMAHFPSKEIARLSYEYRTL 492

Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-- 714
           GLG     + L +L IPY SP+A+ +A      ++  A + S E+A + GA++    +  
Sbjct: 493 GLGFANLGTVLMVLGIPYDSPKALALAGAIASVMTGQAYATSAEMAHDLGAFAGHSANAK 552

Query: 715 ----------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGM 758
                          +   +  GL    R          +   +   WDE  ++ K  G 
Sbjct: 553 EMLRVIRNHRRAAHNLSEEEYEGLSVSPRGIDSEYCPKELFEAAGKIWDEALQKGKKYGF 612

Query: 759 RNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLW 816
           RN+    IAPT TI  +    +  I+P +  + + K    G F +VN  +   L++   +
Sbjct: 613 RNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALERLG-Y 671

Query: 817 DEAMISDLKYH---DGSIGNIERI 837
             + I +++++    G++     I
Sbjct: 672 TPSQIDEIEHYCKGHGTLAGSPSI 695



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 21/174 (12%)

Query: 788 NLYVKSNMSGDF--------TVVNSFLVNELKQRDLW--DEAMISDLKYHDGSIGNIERI 837
             + K  +  +F          +N    + L+       D  + +D      +I     +
Sbjct: 725 FAFNKWILGEEFCASLGFSDQQLNDPDFDLLQALGATVEDAELANDYVCGTMTIEGAPHL 784

Query: 838 PDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888
             +   +   A          I  M  +   S  Q +I  A S  + +    +  ++  +
Sbjct: 785 KLEHLPVFDCASRCGKKGQRYIKHMAHVRMMSSVQPFISGAISKTVNMPSTATTAEIGEV 844

Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           Y  AW   +K     R  S  S   ++    D  L+ V +     S      P 
Sbjct: 845 YTSAWQHMIKAITVYRDGSKLSQPLNSSSYQD--LDEVIMLGTEESLDETKGPK 896


>gi|307945073|ref|ZP_07660409.1| vitamin B12-dependent ribonucleotide reductase [Roseibium sp.
           TrichSKD4]
 gi|307770946|gb|EFO30171.1| vitamin B12-dependent ribonucleotide reductase [Roseibium sp.
           TrichSKD4]
          Length = 1227

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 113/586 (19%), Positives = 194/586 (33%), Gaps = 93/586 (15%)

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
               +     T   +   HPQ  +CF+ +V D   +  GI       A L KY  G G++
Sbjct: 175 YYVDYETGKLTKSATAYEHPQPHACFIQSVEDDLVNENGIMDLWVREARLFKYGSGTGSN 234

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK------------GAVCAY 451
           ++ VRG G  + G  GKS G++ FLK+ +  A A+  GG  +              V  Y
Sbjct: 235 FSRVRGEGEKLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDVEEY 293

Query: 452 LETW-----------------HIDVEEFLDLRKNTGDDRRRTHD------------MNTA 482
           +                       +   +    N   D     D                
Sbjct: 294 INWKVKEEQKVAALVTGSKICQKHLSAIMKACVNCEADNGDCFDPAKNPALKREIRAAKK 353

Query: 483 NWIPDLFMKRVTQ--------------NAGWTLFSPDEVSDLHDLYGKEFEI------AY 522
             +P+ +++RV Q              N  W   +   VS  +                 
Sbjct: 354 MMVPENYIQRVIQFARQGFTKIEFPTYNTDWDSEAYLTVSGQNSNNSVRVTDGFLKAVMT 413

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
           +       R      + I A  LW ++    + +  P + +    N        G + +S
Sbjct: 414 DGDWDLTARRSGDAIKTIKAKELWEQIGYAAWASADPGLQYHTTINDWHTCPASGEIRAS 473

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCH 641
           N C+E        +   CNL S+NL+     +  FD +     +R    VL+  + +   
Sbjct: 474 NPCSEYMF----LDDTACNLASLNLMQFRNEDRSFDVESYEHAVRLWTMVLEVSVLMAQF 529

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
             ++  + ++ +R  GLG       L    IPY S E   I       ++  A + S E+
Sbjct: 530 PSKEIAELSYRYRTTGLGYANIGGLLMTSGIPYDSTEGRAICGALTAIMTGVAFATSAEM 589

Query: 702 AQERGAYSSFKGSLWDQGVFPI------------------DSIGLLAEVRDELAMNRTSR 743
           A E G +  +K +                           D + L      +  +   ++
Sbjct: 590 AGELGPFPGYKDNAKHMLRVMRNHRRAAFGEASGYEKLSTDPVPLDHASCADKRLVERAK 649

Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTV 801
             WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K    G F +
Sbjct: 650 AAWDKALELGEKHGYRNAQTTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKI 709

Query: 802 VNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI 844
           +N  +   L      +  +     Y    GS+     I P  LK  
Sbjct: 710 INRAVPEALSVLGYSESQIAEIEAYAVGHGSLDQAPAINPGALKAK 755



 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     + ++   +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 829 TLEGAPFLKEEHYPVFDCANPCGRIGKRFLSVESHIRMMAAAQPFISGAISKTINMPNDA 888

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           + +     Y  +W + LK     R  S 
Sbjct: 889 TVEDCMEAYMLSWKLALKANALYRDGSK 916


>gi|126668921|ref|ZP_01739863.1| ribonucleoside reductase precursor [Marinobacter sp. ELB17]
 gi|126626617|gb|EAZ97272.1| ribonucleoside reductase precursor [Marinobacter sp. ELB17]
          Length = 1087

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 140/347 (40%), Gaps = 34/347 (9%)

Query: 580  HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDN 634
              ++ C E  L         C LGS+NL     +   D     Y+K    +    R+LDN
Sbjct: 690  FHAHNCGEQPLPPY----GSCLLGSVNLTMFVDDPFTDKASFNYEKYKKVVGIFTRMLDN 745

Query: 635  VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            V++IN   + + +      R  G+G++G  S L +L +PY S E+V   ++ +  ++   
Sbjct: 746  VVEINGLPLAQQRHEITYKRRHGMGILGLGSTLAMLRMPYGSEESVVFTEDVVREMAVEG 805

Query: 695  ISASVELAQERGAYSSF----KGSLWDQGVFPI---DSIGLLAEVRDELAMNRTSRLPW- 746
               S+ L +E+GA        + +    G  P    D   L  +++  +   + SR    
Sbjct: 806  WRQSLALGKEKGAAPIMDDEFEITPKLLGKCPQLTADGYNLGDKLKGRVLHAKYSRYMQR 865

Query: 747  -----DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDF 799
                  EL  ++   G R ++  +IAPT TI+       S  I+PS+ + Y ++ +    
Sbjct: 866  IAEVEPELVAQLAEKGGRFTHHTSIAPTGTISLSLANNASNGIEPSFSHHYARNII---- 921

Query: 800  TVVNSFLVNELKQRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                       ++ D++   ++      + G++   +     L     T+ ++ P   ++
Sbjct: 922  ----REGRKTKEKVDVFSFELLAYRHLSNPGAMPFSDDADKKLPDYFTTSDDVTPAQHVD 977

Query: 859  SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
              +  Q WID + S    +  +   K    IY  A+  GLK     R
Sbjct: 978  IQAAAQLWIDSSISKTANVPTDFPYKNFKDIYLYAFDKGLKGCTTFR 1024



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 122/308 (39%), Gaps = 24/308 (7%)

Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMC 353
           +     L  +    ++   +      + RVA  L+  E +  + +  + +        + 
Sbjct: 22  WNSKYQLKTKTGDAVDKDILAT----YERVAQALSEVENKDLRAKHYKDFAWALKHGAIP 77

Query: 354 STPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
           +   + N+G +  +      +C ++  + D +  I G   E  +  K   G+G +++ +R
Sbjct: 78  AGRIISNAGAQSHKPATSTINCTVSGNINDSMNDILGKNHEAGLTLKAGCGIGYEFSTLR 137

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA++ G    + G + F+ + +     V+  G R+GA  A  +  H D+ +F+  ++ 
Sbjct: 138 PRGAYVAGAGATTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDIHHPDIIDFIQAKR- 196

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDLYGKEF 518
              +  R    N +  I + F+  V  NA W+L  P           +++D      ++F
Sbjct: 197 ---EDGRLRQFNLSLLITEDFINAVRDNADWSLSFPVTDKEVEEEDLDLTDTAKFVYRDF 253

Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
            +  +       +   +++R + A  +W  ++T  ++   P     D  N  +       
Sbjct: 254 PVVKDYVMNAEGKVACRIYRTLKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCED 313

Query: 579 VHSSNLCT 586
           + ++N C 
Sbjct: 314 IRATNPCV 321


>gi|83593776|ref|YP_427528.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576690|gb|ABC23241.1| ribonucleoside-diphosphate reductase class II [Rhodospirillum
           rubrum ATCC 11170]
          Length = 1231

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 107/557 (19%), Positives = 193/557 (34%), Gaps = 93/557 (16%)

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G +++ +R  G      
Sbjct: 189 SAYEHPQPHACFIQSVNDDLVNDGGIMDLWVREARLFKYGSGTGTNFSSLRASGES-LSG 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG------ 470
            GKS G++ FLK+ +  A A+  G   R+ A     +  H D+EEF+  +          
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVICDIDHPDIEEFITWKAREEQKVAAL 307

Query: 471 --------------------------DDR---------RRTHDMNTANWIPDLFMKRVTQ 495
                                     D+R         ++         IP+ ++KRV Q
Sbjct: 308 VSGSKLCSQNLNAVMEATRTWDGKDGDERFDPTVNKTLKKAILGARKAMIPENYIKRVIQ 367

Query: 496 --------------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-----V 536
                         +  W   +   V+  +         A+     +     ++      
Sbjct: 368 LSRQGFTGIDFETYDTDWDSEAYLTVAGQNSNNSVRVTDAFLQQVERDGAWTLRHRMSEK 427

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R + A  LW ++    + +  P + F    N        G +++SN C+E        +
Sbjct: 428 TRTVKARTLWDEIAFAAWASADPGLQFDTTINDWHTCPESGRINASNPCSEYMF----LD 483

Query: 597 TAVCNLGSINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              CNL S+NL+           FD    A   R    VL+  + +      +  + ++ 
Sbjct: 484 DTACNLASLNLITFRGQGAEAGLFDAVGFAHACRLWTVVLEISVLMAQFPSREIAERSYK 543

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R +GLG       L    +PY S     +       ++  A + S E+A++ GA+  F 
Sbjct: 544 FRTLGLGYANIGGLLMANGLPYDSDAGRALCGALSAIMTGVAYATSAEMAEQMGAFPGFA 603

Query: 713 GSLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKRVK 754
            +         +                     L      +  +   ++  WD+  +   
Sbjct: 604 INREAMLRVIRNHRRAAFGESKGYEALSIAPVPLDIRNCPQADLVAVAQRAWDKALEIGT 663

Query: 755 TIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQ 812
             G RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  + + L+ 
Sbjct: 664 AHGFRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRMVPSALRT 723

Query: 813 RDLWDEAMISDLKYHDG 829
               + A+ + + Y  G
Sbjct: 724 LGYGEAAIAAIINYAVG 740



 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 16/168 (9%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           + +  +      +N   V+ L         + +   +  G  ++     + D+   +   
Sbjct: 791 FCRDVLKMSDAQLNDPGVDLLTTLGFSKADIEAANTHVCGAMTLEGAPGLKDEHLAVFDC 850

Query: 848 A---------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897
           A         F +     I   +  Q +I  A S  + + +E S +     Y  +W +GL
Sbjct: 851 ASPCGRLGKRF-LSATSHIHMMAAAQPFISGAISKTINMPNEASVEDCKQAYMTSWRLGL 909

Query: 898 KTTYYLRSRSATS---VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K     R  S  S     +   +  D +     V     S  +  +  
Sbjct: 910 KANALYRDGSKLSQPLAAQVLEEDDDQETLEEAVAGKAVSVQAEVVAE 957


>gi|168704293|ref|ZP_02736570.1| ribonucleotide-diphosphate reductase subunit alpha [Gemmata
           obscuriglobus UQM 2246]
          Length = 1246

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 121/656 (18%), Positives = 221/656 (33%), Gaps = 122/656 (18%)

Query: 304 RYFLHINGSRIEMPQA---FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
             +    G      +    F+  V   LA++       + +++N    + +    P   +
Sbjct: 110 WTYWGWKGGYFTSERDARAFYDEVCYMLAMQMAAPN--SPQWFNTGLHWAYGIEGPPQGH 167

Query: 361 --------------SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
                         S    P   +CF+  V D   +  GI       A + KY  G G++
Sbjct: 168 FFVNPLSGELERSTSAYERPAPHACFIQEVADDLVNEGGIMDLWVREARIFKYGSGTGSN 227

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +RG G  + G  GKS G++ FLK+ +  A A+  G   R+ A    L+  H D+EEF
Sbjct: 228 FSSLRGEGEPLSG-GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVLDLDHPDIEEF 286

Query: 463 LDLRKNTGDDR---------------------------------------RRTHDMNTAN 483
           ++ +                                              R+      A 
Sbjct: 287 VNWKVTEEQKVADLVTGSRLLNKHLNAIMRALHGHAVAEERYDPTKNAALRKAVLEARAA 346

Query: 484 WIPDLFMKRV--------------TQNAGWTLFSPDEV----SDLHDLYGKEFEIAYENY 525
            +P+ ++ RV                +  W   +   V    S+       EF  A EN 
Sbjct: 347 LLPENYIARVLQLARQGWKSIEIDEYDTDWNSKAYYTVSGQNSNNSVRIPNEFMRAVENN 406

Query: 526 --ERQADRGEIKVFR----------KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              +   R E++  +           + A  LW ++    +    P + F    N     
Sbjct: 407 GPWQLFWRTELEKAKKEGRAPKAKKTLPARELWDQISYAAWSCADPGVQFHTTINEWHTC 466

Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRV 631
              G + +SN C+E        +   CNL S+NL   F     +FD +     +R    +
Sbjct: 467 PLDGEIRASNPCSEYLF----LDDTACNLASLNLTTFFDTKAGKFDIEAYRHAVRIWTMI 522

Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
           L+  + +     +   + ++  R +GLG     + L +  I Y S E           + 
Sbjct: 523 LEVSVYMAQFPSQSVAQKSYDFRTLGLGYANLGALLMVQGISYDSAEGRAQCGALTAIMH 582

Query: 692 FHAISASVELAQERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRD----- 734
             A +AS E+A E G ++ +  +                   P +  GL           
Sbjct: 583 AGAYAASAEMAAEVGPFARYAANRDHMLRVVRNHRRAAYNAAPAEYEGLSVYPVGIDARY 642

Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YV 791
               +   +R   D + +  +  G RN+    +APT TI  +    +  I+P +  + + 
Sbjct: 643 CPPDLLAAARRESDRMLELGERHGYRNAQVTVVAPTGTIGLVMDCDTTGIEPDFALVKFK 702

Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERI-PDDLKKI 844
           K    G F ++N  +   L +    +  +   ++Y  G  ++     I P  LK  
Sbjct: 703 KLAGGGYFKIINQSVPPALAKLGYANWQIEDIVRYSRGAATLHGCPHINPAVLKAK 758



 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 12/168 (7%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHAT 847
           +VK+ +      + +   + L         +     Y  G+  I     +  +   +   
Sbjct: 791 FVKNVLKVPAEALAAPTFDLLTHLGFSKTQVAEANGYVCGTMTIEGAPHLKPEHYAVFDC 850

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + +  + + + +   Y  +W +  K
Sbjct: 851 ANKCGKTGKRYLSWESHIRMMAAAQPYISGAISKTINMPYDATVEDVKKAYLLSWQLMTK 910

Query: 899 TTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
                R  S  +    S     +  L A    +   +           
Sbjct: 911 ANALYRDGSKLSQPLNSVADSPEAALLASVTPEAEKAEAKAPQVQVAE 958


>gi|193212265|ref|YP_001998218.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobaculum
           parvum NCIB 8327]
 gi|193085742|gb|ACF11018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobaculum parvum NCIB 8327]
          Length = 1152

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 127/619 (20%), Positives = 216/619 (34%), Gaps = 103/619 (16%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG------------ 362
           E  QAF+  V   L  +       + +++N    F +  + P   +              
Sbjct: 115 EDAQAFYDEVVYMLLAQMAAPN--SPQWFNTGLQFAYGINGPAQGHFYVDPETGETRESE 172

Query: 363 --TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
                PQ  +CF+ +V D   +  GIF      A + K+  G G +++ +RG G      
Sbjct: 173 DAYSRPQAHACFIQSVKDDLVNEGGIFDLAVREARVFKFGSGSGTNYSNLRGSGEK-LSG 231

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-- 474
            G S G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F++ +    D     
Sbjct: 232 GGSSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIIDIDHPDVEKFIEWKAKEEDKVASM 291

Query: 475 ------------------------RTHDMNTANWIPDLFMKRVTQN-------------- 496
                                   R  +      I +   + V  +              
Sbjct: 292 VAGSKICSRFLKAIVDEALKGGTDRQENEMLNTLIKNALHRGVPMSYILRVLALVEQGYT 351

Query: 497 ----AGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQA--DRGEIKVFRKISA 542
                 +      E          +       EF  A +N E     +R   K  R + A
Sbjct: 352 TLDFEEYDTHYESEAYQTVGGQNSNNSVRVTNEFMKAVQNDEMWVLRERTTGKDARAVRA 411

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             LW K++   ++   P + F    N        G +++SN C+E        +   CNL
Sbjct: 412 KDLWEKIVMSAWKCADPGLQFDSTINEWHTCPVSGRINASNPCSEYMF----LDDTACNL 467

Query: 603 GSINLLAHFANNQFDYD--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
            S+NL              +L         VL+  + +     E   + ++  R +GLG 
Sbjct: 468 ASLNLAHFLDEESGKIKITELQHASALWTVVLEISVLMAHFPSEDIARLSYEFRTLGLGF 527

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------ 714
                 L +L IPY SP A+ IA      ++  A   S +LA++ GA++ ++ +      
Sbjct: 528 ANLGRILMVLGIPYDSPRALAIAGGIAALMTGQAYVTSADLAKDHGAFARYRENSNEMLR 587

Query: 715 ------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSN 762
                          +  GL+ + R          +   +   WDE  KR K  G RN+ 
Sbjct: 588 VIRNHRRAAHNSAEEEYEGLVVKPRGIDSEYCPKELFTAAGKVWDEALKRGKKYGFRNAQ 647

Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820
              IAPT TI  +    +  I+P +  + + K    G F +VN  +   L +    D  +
Sbjct: 648 VSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALARLGYSDTQI 707

Query: 821 ISDLKYH--DGSIGNIERI 837
               KY    G++     I
Sbjct: 708 EEIEKYCKGHGTLRGCPGI 726



 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERIPDDLKKIHATA--- 848
           ++      +N    + L +    DE + +   Y  G+  I     +  +   +   A   
Sbjct: 770 SLGFTEEQLNDPGFDMLSELGASDEDIEAANDYVCGTMMIEGAPHLKAEHLPVFDCASTC 829

Query: 849 -----FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902
                  I+ M  +   S  Q +I  A S  + +    +  ++  +Y  AW   +K    
Sbjct: 830 GRKGERYINHMAHVHMMSAVQPFISGAISKTVNMPASATTAEIGDVYEAAWQSMVKAITI 889

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            R  S  S   +     D  L+ V +            P 
Sbjct: 890 YRDGSKLSQPLNISSIAD--LDEVVMLGTEEELDETKGPK 927


>gi|189346081|ref|YP_001942610.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           limicola DSM 245]
 gi|189340228|gb|ACD89631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Chlorobium limicola DSM 245]
          Length = 1146

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 122/623 (19%), Positives = 218/623 (34%), Gaps = 104/623 (16%)

Query: 304 RYFLHINGSRIEMPQA---FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                 N    + P     F+  VA  L  +       + +++N   +F +    P   +
Sbjct: 96  WREWGENNRYFDTPDDARAFYDEVAYMLLRQMGAPN--SPQWFNTGLNFAYGIDGPAQGH 153

Query: 361 SG--------------TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
                              PQ  +CF+ +V D   +  GIF      A + K+  G G +
Sbjct: 154 FYVDPATQEVRESEDAYSRPQAHACFIQSVNDDLVNEGGIFDLAVREARVFKFGSGSGTN 213

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G       G S G++ FLK+ +  A A+  G   R+ A    ++  H DVE F
Sbjct: 214 YSNLRSSGEK-LSGGGSSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVERF 272

Query: 463 LDLRKNTGDDRR--------------------------RTHDMNTANWIPDLFMKRVTQN 496
           ++ +    D                             R+ ++N    I +   + V  N
Sbjct: 273 IEWKAREEDKVAALVAGSRICSRFLKAIVDEAIANGSDRSENLNLQLLIKNALARAVPMN 332

Query: 497 ------------------AGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQAD 530
                               +      E          +        F  A EN +  A 
Sbjct: 333 YIVRVLALVDQGYTTLDFEEYDTHYESEAYQTVGGQNSNNTVRVTNAFMKAVENDDMWAL 392

Query: 531 RGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           R     K  R + A  LW K+L   ++   P + F    N        G +++SN C+E 
Sbjct: 393 RERTTDKTARAVRARDLWEKVLMSAWKCADPGLQFDTTINEWHTCPQSGRINASNPCSEY 452

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKA 646
                  +   CNL S+NL+     +       +L         VL+  + +     +  
Sbjct: 453 MF----LDDTACNLASLNLIHFVDESTGKIRVRELLHASALWTVVLEISVLMAHFPSKDI 508

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706
            + ++ +R +GLG     + L +L IPY SP+A+ +A      ++  A   S E+A++ G
Sbjct: 509 ARLSYEYRTLGLGFANLGTVLMVLGIPYDSPKALALAGAISALMTGQAYVTSAEMAKDLG 568

Query: 707 AYSSFKGS------------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDE 748
           A++ +  +                 +   +  GL  + R          +   +   WDE
Sbjct: 569 AFAGYAANSKDMLRVIRNHRRAAHNLSEEEYEGLSVKPRGIDSEYCPTELFEAAGKIWDE 628

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFL 806
             ++ K  G RN+    IAPT TI  +    +  ++P +  + + K    G F +VN  +
Sbjct: 629 ALQKGKKHGFRNAQVSVIAPTGTIGLVMDCDTTGVEPEFAIVKFKKLAGGGYFKIVNQSV 688

Query: 807 VNELKQRDLWDEAMISDLKYHDG 829
              L++       +    KY  G
Sbjct: 689 HKALERLGYTSAQIDDIEKYCKG 711



 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWID 868
           D    +D      +I     +  +   +   A          I  M  +   S  Q +I 
Sbjct: 790 DAEAANDYICGTMTIEGAPHLKHEHLPVFDCASRCGKKGERYITHMAHVHMMSAVQPFIS 849

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            A S  + +    +  ++  +YR AW   +K     R  S 
Sbjct: 850 GAISKTVNMPGTATTVEIGDVYRSAWQHMVKAITIYRDGSK 890


>gi|296444836|ref|ZP_06886799.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylosinus trichosporium OB3b]
 gi|296257784|gb|EFH04848.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Methylosinus trichosporium OB3b]
          Length = 1207

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 145/802 (18%), Positives = 246/802 (30%), Gaps = 145/802 (18%)

Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
           ER   RA QS        A + +I   DG+++ F    ++                 V  
Sbjct: 4   ERRYTRAGQSPYADIEFRAARSEIRNPDGSVV-FQLDDIDA----------PADWSQVAI 52

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
           +     Y          A + +    IE+    +          L R    +  +     
Sbjct: 53  DVLAQKY-------FRKAGVPARLKRIEEHAVPSF---------LWRSAPDS--EALAAV 94

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
              E           +                FD    A+  + E         L+ +  
Sbjct: 95  PQDERNGSEISARQVFDRLAGAWAYWGWKGGYFDAEEDASAFQDE---------LRFMLA 145

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363
           R     N      PQ F      GL             FY             T   +  
Sbjct: 146 RQMAAPN-----SPQWF----NTGLHWAYGIDGPSQGHFY-----VDHNTGELTKSKTAY 191

Query: 364 RHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
            HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG    + G    
Sbjct: 192 EHPQPHACFIQSVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRGEKEKLSGGG-S 250

Query: 421 SQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR------ 473
           S G++ FLK+ +  A A+  G   R+ A    ++  H DVE F++ +    +        
Sbjct: 251 SSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDVEAFIEWKVKEEEKVAALVAG 310

Query: 474 ----------------------------------RRTHDMNTANWIPDLFMKRVTQ---- 495
                                             +R         +P+ ++KRV Q    
Sbjct: 311 SKIVKKHLKAVMRACVNCEGPGFDCFEPEKNPALKREIRAARRAEVPENYIKRVIQFARQ 370

Query: 496 ----------NAGWTLFSPDEVSDLHDLYGKEFEIAYEN------YERQADRGEIKVFRK 539
                     +  W   +   VS  +          +              R + KV + 
Sbjct: 371 GYKDISFETYDTDWDSEAYLTVSGQNSNNTVRVTDEFLRAVESDGDWNLTRRLDGKVSKT 430

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           + A  LW ++    + +  P I F    N        G + +SN C+E        +   
Sbjct: 431 LKARELWERIGYAAWASADPGIQFHTTINDWHTCPAGGPIRASNPCSEYMF----LDDTA 486

Query: 600 CNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
           CNL S+NLL   +    +FD D      R    VL+  + +      +  + ++ +R +G
Sbjct: 487 CNLASLNLLQFRNDETKRFDVDSYEHAARLWTVVLEVSVLMAQFPSREIAQLSYDYRTLG 546

Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
           LG       L    I Y S     +       ++  A  AS E+A+ERGA+  F  +   
Sbjct: 547 LGYANVGGLLMSCGIAYDSEAGRALCGALSAIMTGVAYRASAEMAKERGAFDCFPQNREA 606

Query: 718 QGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
                 +                     L      +  +   +   WDE     +  G R
Sbjct: 607 MLRVIRNHRRAAHGQRAGYEGLSMTPVPLDHAACPDQTLIARAMRAWDEALSLGEQYGYR 666

Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           N+    +APT TI  +    +  I+P +  + + K    G   +VN  +   L+     +
Sbjct: 667 NAQVSVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYLKIVNRAVPEALRALGYRE 726

Query: 818 EAMISDLKYHDG--SIGNIERI 837
             +     Y  G  S+ N   +
Sbjct: 727 AEIAEIEAYAVGHASLSNAPAV 748



 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 788 NLYVKSNMSGDFTV---------VNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIER 836
            ++ K  +  DF V         ++    + L       + + +   +  G  ++     
Sbjct: 778 FVFNKWTLGADFLVSALKVPQSALDDASFDLLTHLGFSRQEIEAANIHICGAMTLEGAPH 837

Query: 837 IPDDLKKIHATAF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887
           +  +   +   A          +     I   +  Q +I  A S  + + ++ + +  + 
Sbjct: 838 LLPEHYPVFDCANPCGRLGKRYLSVESHIRMMAAAQPFISGAISKTINMPNDATIEDCEA 897

Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKST 915
            Y  +W + LK     R  S  S   ST
Sbjct: 898 SYLLSWKLALKANALYRDGSKLSQPLST 925


>gi|254226425|ref|ZP_04920012.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           cholerae V51]
 gi|125621047|gb|EAZ49394.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio
           cholerae V51]
          Length = 232

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 16/221 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L +   DG   + +  ++  ++  A  GLQ+VS   V    +   YDG++ SD+   +I
Sbjct: 4   QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            S+  LI +E P+Y  + AR  +  LR++           A   +M           +E+
Sbjct: 64  KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKM-----------VEK 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320
           G   + L E     +L  +   + + RD  F Y  ++ L  +YF    + G   E  Q  
Sbjct: 113 GKYDKHLLEDYTSEELELMEQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172

Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359
           ++ VA  L     +  +      FY+  S+F     TP + 
Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMS 213


>gi|319442525|ref|ZP_07991681.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 323

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 134/340 (39%), Gaps = 48/340 (14%)

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636
             V + +   +    +   +   CNLGS+N+ A       D    + TI TA+R L  V 
Sbjct: 1   MQVSTPSTFNDDLTYAEIGDDISCNLGSLNIAAAV-----DSPDFSRTIETAIRGLTAVS 55

Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
           D     ++   ++ N+   AIGLG M     L   HI Y S E ++  +     + +  +
Sbjct: 56  DQTFIDSVPSIREGNNASHAIGLGQMNLHGFLGREHIYYGSEEGLDFTNAYFAAVMYECL 115

Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPW 746
            AS  +A+ERG  + SF+ S +  G F               + E+    +++      W
Sbjct: 116 KASNAIARERGRKFGSFETSDYASGEFFDRYDPASFAPATDRVREIFANSSIHVPDAADW 175

Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSF 805
             LK  V   G+ N N  A+ PT +I+ I   + SI P    + ++     G        
Sbjct: 176 AALKDAVMADGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPH 235

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           + N+                                 +    A+EI    +I++ +   K
Sbjct: 236 MDND-------------------------------NLEYFQDAYEIGYEKIIDTYAVATK 264

Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904
           ++DQ  SL L+  D+ + + ++     AW  G+KT YY+R
Sbjct: 265 YVDQGLSLTLFFRDDATTRDINRAQIYAWRKGIKTLYYIR 304


>gi|194335987|ref|YP_002017781.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308464|gb|ACF43164.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1141

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 122/637 (19%), Positives = 226/637 (35%), Gaps = 114/637 (17%)

Query: 304 RYFLHINGSRIEMPQA---FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                      + P     F+  VA  +  +       + +++N   +F +  + P   +
Sbjct: 101 WRDWGEKNRYFDTPDDAAAFYDEVAFMMLRQMAAPN--SPQWFNTGLNFAYGTTGPAQGH 158

Query: 361 SG--------------TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
                              PQ  +CF+ +V D   +  GIF      A + K+  G G +
Sbjct: 159 FYVDPESGEVKESEDAYGRPQAHACFIQSVSDDLVNDGGIFDLAIREARVFKFGSGSGTN 218

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G       G S G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F
Sbjct: 219 YSNLRSGGEK-LSGGGSSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKF 277

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK------ 516
           ++ +    D   +   +   + I   F++ + + A            LH L         
Sbjct: 278 IEWKAKEED---KVASLVAGSRICSRFLQAIVEEALANGADRKANPQLHRLIQNALSRAV 334

Query: 517 -------------------EFEIAYENYERQAD--------------------------- 530
                              +FE    NYE +A                            
Sbjct: 335 PMSYIVRVLALVEQGYTTLDFEEYTSNYESEAYQTVGGQNSNNTVRMTNEFMKAVENDDV 394

Query: 531 -----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                R   K  R + A  LW K+L   ++   P + F    N        G +++SN C
Sbjct: 395 WSLRERTTGKTARVVKARDLWEKILLSSWKCADPGLQFDTTINEWHTCPKSGRINASNPC 454

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           +E        +   CNL S+NL+        +    +L         VL+  + +     
Sbjct: 455 SEYMF----LDDTACNLASLNLIHFIDEASGRMKVKELQHASALWAVVLEISVLMAHFPS 510

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            +  + ++  R +GLG     + L +L IPY SP A+ +A      ++  A   S E+A 
Sbjct: 511 REIARLSYEFRTLGLGFANLGTVLMVLGIPYDSPRALALAGAISAVMTGQAYVTSAEMAH 570

Query: 704 ERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLP 745
           + GA+S ++ +               + +   +  GL  + R          +   +   
Sbjct: 571 DLGAFSGYEANREEMLRVIRNHRRAARNMSEEEYEGLSVKPRGIDSEYCPGELFEAAGKV 630

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVN 803
           WD   ++    G RN+    IAPT TI  +    +  I+P +  + + K    G F +VN
Sbjct: 631 WDLALEKGMQYGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVN 690

Query: 804 SFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837
             +   L++   +  A I D++++    G++     +
Sbjct: 691 QSVHKALERLG-YTPAQIDDIEHYCKGHGTLSGSPSL 726



 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWID 868
           D  + +D      +I     +  +   +   A          I  M  +   S  Q +I 
Sbjct: 795 DAELANDYICGTMTIEGAPHLKLEHLPVFDCASRCGRKGLRYIKHMAHVRMMSAVQPFIS 854

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
            A S  + +    +  ++  +++ AWL  +K     R  S 
Sbjct: 855 GAISKTVNMPGTATTVEIGEVFQAAWLQMVKAITIYRDGSK 895


>gi|167574090|ref|ZP_02366964.1| hypothetical protein BoklC_29910 [Burkholderia oklahomensis C6786]
          Length = 610

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 113/594 (19%), Positives = 206/594 (34%), Gaps = 75/594 (12%)

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIFGALQ 388
           +   A  FY  L +               +   ++SCF+  +            +  A+ 
Sbjct: 66  RSGAARRFYRNLLNGALGAGRIMARAGAAQDQTMASCFVHPIRAPAALTRFHPDLDRAID 125

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
           E  +     G +G D++ +    A        S GV   L   +       +   R+ A 
Sbjct: 126 EARLTLAMGGDVGYDFSAIPPASARPEAEQSTSPGVCAALDRFDRIGAQAGERDGRRRAQ 185

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
            A L   H D+  F+  ++       R   +  A  + D FM+ + Q+  WTL  P    
Sbjct: 186 LAVLRCDHPDLLAFVAAKRGHA----RWETLELAVAVTDAFMQAIEQDRPWTLRHPAPPH 241

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH-PWITFKDPC 567
           D         + A+      A      ++R+I A              G  P + F D  
Sbjct: 242 DAASGALPAADGAWTY----ATVPARHLWREIVA----------ATRDGEGPGLVFVDAI 287

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDK 620
           +  +P +    + +++ C    L         C LG+++L     N         FD+  
Sbjct: 288 DAANPLRGRERIDATSPCGAQPLPPY----GSCMLGAVDLSRFVRNPFGAGGEPRFDFAA 343

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
             + +R  VR+LDN +D+    +    + ++  R IG+G+ G    L ++ + Y SP A 
Sbjct: 344 FDAAVRVEVRLLDNALDVTRWPLAAHARESYQKRRIGVGVTGLADMLAMMRLRYDSPAAR 403

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           E+       +  HA +AS ELA ERGA+                    L +    L    
Sbjct: 404 EMTRYIASDLRNHAYAASAELAAERGAFP-------------------LCDRYAHLDALH 444

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGD 798
                   +   ++  G+RNS+  + AP   ++   G   S  I+P+   +  ++  +G 
Sbjct: 445 AGPPLPHAVCHAIERDGLRNSHLTSFAPVVGVSLAFGDNCSPGIEPARAWIEHRTVRTGT 504

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
                  +  E     L+       +                L    AT  ++ P   + 
Sbjct: 505 TG--APVMRAENHAHRLFRALRGERVA---------------LPDYFATDADVAPGDRLA 547

Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911
             +  Q ++D   +  L L    S ++++ +   AW   LK+    R+  A   
Sbjct: 548 MRAALQPYVDAGVANTLTLAGHHSLEEINALLFGAWRAKLKSVAIRRADVARDA 601


>gi|328720930|ref|XP_003247166.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 234

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 17/228 (7%)

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
           +  P+ SP++  +  +  E + + A+ AS ELA++ G YSS+K S   QG          
Sbjct: 1   MQYPFGSPKSRNLNIQIFETLYYGALEASCELAEKYGTYSSYKESPISQGYM-------- 52

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                      +    W  LK+++   G+RNS  ++I  TA  A I G + SI+P   N 
Sbjct: 53  ------WNKQPSELWNWPLLKEKIAKYGVRNSLLLSIMTTAKTARILGNNDSIEPYTNNF 106

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849
           Y     +G++++ N  LVN+L + +LW+E MI+  +Y  GS+  I RIP  +K+++ T++
Sbjct: 107 YHLRISAGEYSIYNCHLVNDLIKLNLWNEDMINTFRYLKGSVQKIARIPQHIKELYPTSW 166

Query: 850 EIDPMWLIESASR-RQKW--IDQAQSLNLYLDEPSGKKLDFIYRQAWL 894
           ++    ++E A+R R     I  ++S NL+   P   K+   +   W 
Sbjct: 167 KLPQKIILEMAARERTIHRSISPSRSTNLFFAGPIYGKISSAHFFGWK 214


>gi|289579754|ref|YP_003478220.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Natrialba magadii ATCC 43099]
 gi|289529307|gb|ADD03658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Natrialba magadii ATCC 43099]
          Length = 1416

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 133/375 (35%), Gaps = 27/375 (7%)

Query: 568  NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
            N      H+ +   ++         S       +  +  + A       DY++    I  
Sbjct: 814  NEACNLGHINLSTLADTDAPDWRVWSEAHADEYDSQAEAVDAFLEEAI-DYEEFDERISY 872

Query: 628  AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
              R L+NV+ ++   +E  +++    R IGLG+MG       L I Y S E  E+A + M
Sbjct: 873  GTRFLENVVTMSDFPVEDIEQTVRDMRKIGLGIMGLAQLYIQLGIRYGSEEGNEVARQLM 932

Query: 688  EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
              I+  A + S ELA ERG+++ +  S +              E R+             
Sbjct: 933  THINHGAKATSHELATERGSFNDWDDSKYANPT----------EYREWFEHQTGEDADDW 982

Query: 748  ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVV 802
            E    ++     N N   IAPT T + +   +   +P Y   Y K+              
Sbjct: 983  EDGFPIR-----NHNVTTIAPTGTTSMVGNTTGGCEPIYNVAYYKNVTDDVQGDEMLVEF 1037

Query: 803  NSFLVNELKQRDLWDEAMISDLKYHDGS-----IGNIERIPDDLKKIHATAFEIDPMWLI 857
            + + +  L+  D+  +A+  + +    +     +  +  +PD + ++     ++      
Sbjct: 1038 DDYFLRTLEANDIDVDAVKEEAQEQMATNQFEGVEGLSTVPDAIGELFVITSDLSAKQHA 1097

Query: 858  ESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916
                  QK +D A S  +   ++ S +    ++   +  G K   Y R  + +    +T 
Sbjct: 1098 AVQCACQKGVDSAISKTVNAPNDSSLEDAKDVFEWVYENGGKGVTYYRDGTRSKQVLTTR 1157

Query: 917  KGVDGKLNAVPVTDP 931
                   +     + 
Sbjct: 1158 ADNADFADETEAAEA 1172



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 105/279 (37%), Gaps = 45/279 (16%)

Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           F   + +  FM ++PTL N+G    QLS+CF+ +  DDL  I    ++ A + +  GG+G
Sbjct: 148 FTEGMENLSFMPNSPTLMNAGDELQQLSACFVMSPDDDLSDIHETAKKAAEVFQSGGGVG 207

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
             +  +R  G  +  T G + G I F++  +     + QGG R+GA    +   H DV E
Sbjct: 208 YGFWKLRPYGDAVGSTGGIASGPITFMRTYDQLCETIAQGGTRRGAQMGIMRVSHPDVIE 267

Query: 462 FL------------------------------DLRKNTGDDRRRTH------------DM 479
           F+                              +  ++  D+  R              + 
Sbjct: 268 FIHAKNKDVSLAHCLRLNDPDDYTYTSFSEALEEARDLIDEDGRVPKHLRNAVEGHLSNF 327

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
           N +  + D FM+ +     +T  +P    + H    +  +  Y  Y    +  E+     
Sbjct: 328 NISVGVTDGFMEALQNGEEYTFTNPRT-EEPHIATEET-KEMYSRY-DLGEHIEVGEPLS 384

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578
           I A  +W +++    E G P + + +  N          
Sbjct: 385 IPAELIWERIVEGAHENGEPGVIYLERVNKEHSFDTEEH 423


>gi|258624606|ref|ZP_05719544.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM603]
 gi|258583153|gb|EEW07964.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM603]
          Length = 267

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 42/277 (15%)

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
              ++   +K N    AIGLG M     L    I Y S E ++  +     I+FH + AS
Sbjct: 3   QIDSVPSVRKGNDQSHAIGLGQMNLHGFLAREGIYYGSEEGIDFTNCYFAAIAFHCLRAS 62

Query: 699 VELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDEL 749
            ++A+E +  +  F+ S +  G +    +         ++  + +  A+   ++  W +L
Sbjct: 63  NQIAREKQQTFHDFERSRYASGEYFTPYLQESFAPKTPVVNALFERFAVELPTQEDWQQL 122

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           K+ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G       ++ N
Sbjct: 123 KEAVMRDGLYNRNLQAVPPTGSISYINYSTSSIHPITAKIEIRKEGQVGRVYYPAPYMTN 182

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
           +                                   +  A+EI P  +I++ +   + +D
Sbjct: 183 D-------------------------------NLNYYQDAYEIGPYKIIDTYAAATRHVD 211

Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+     + + ++     AW  G+KT YY+R
Sbjct: 212 QGLSLTLFFPASATTRDINKAQIYAWKKGIKTLYYVR 248


>gi|37523535|ref|NP_926912.1| ribonucleotide reductase large subunit [Gloeobacter violaceus PCC
            7421]
 gi|35214539|dbj|BAC91907.1| gll3966 [Gloeobacter violaceus PCC 7421]
          Length = 1566

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 32/337 (9%)

Query: 585  CTEITLNSSSEETAVCNLGSINLLAHFANNQF----DYDKLASTIRTAVRVLDNVIDINC 640
            C EI L  +    + CNLGSI +       +     D++ LA T+  + R LDNV+D+  
Sbjct: 1123 CGEIWLPPN----SACNLGSIVISKFMHRTERGVELDWEDLARTVEISTRFLDNVLDVAE 1178

Query: 641  HTIEKAKKSNHT-HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                  K +     R +GLG+MG+   L    IPY S   +   D+   FI+  A   S 
Sbjct: 1179 FATPAQKHNVRNVFRQLGLGIMGWADWLKARRIPYDSEAHLREIDKVGRFIAERAYRTSE 1238

Query: 700  ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
             LA E+GA   ++     +   P +      +    +     +    + L +  +     
Sbjct: 1239 ALAAEKGACGIWEEIKDVRPGNPFERWR---DSTGRVLSGDEAAERAEALTQTPRR---- 1291

Query: 760  NSNCMAIAPTATIANICGVSQSIDPSYQN-----LYVKSNMSGD--FTVVNSFLVNELKQ 812
            NS  ++IAPT +IA +   S + +P +       +YV ++ S      + + ++    + 
Sbjct: 1292 NSTVLSIAPTGSIAQLASCSWAFEPDFGLTIWKQVYVDASSSQQNWVQIPSPYV----EA 1347

Query: 813  RDLWDEAMISDLKYHDGSIGN--IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
              L +      +    GS+          +       + EI   W + + SR Q W+D +
Sbjct: 1348 LGLGEAD--RQIVLQTGSLQGTAFAAAHPEEAAAFKISREISWQWHVLAQSRWQNWVDSS 1405

Query: 871  QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             S  +    E + +++  +YR A   GLK     R  
Sbjct: 1406 ISKTINCSRETTVEEIKEMYRFAQRNGLKGITVYREG 1442



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 316 MPQAFFMRVAMGLALKETEK---EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
             +    RVA  +A  E       +    F+++L+    +     L NS      L +CF
Sbjct: 59  TWEDVCRRVARFVAGAEKTPALQREWQERFFSILAPMKMLPGGSILANSDHGTHGLLNCF 118

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN-----GKSQGVIPF 427
           + +  D++  I   + +  +  K+ GG+G +     G   +I         GK+ G    
Sbjct: 119 VLSAEDNIQEIAKLVTDAVLTTKFRGGVGINIGA-HGQKGYIRPKGTPFADGKALGPCAV 177

Query: 428 LKVANDTAVAVNQGGK 443
           L + ++T+  +  G K
Sbjct: 178 LDMVSETSKKITTGNK 193



 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD--MNTANWIPDLFMKRVTQNA 497
               R+GA    +   H DV EF+  +  +  D R   D    TA+   D  +  V +NA
Sbjct: 604 TSNSRRGAFMFSMHWKHPDVWEFIQAKTQSVMDARVARDLIERTADLAVDKGLSDVEKNA 663

Query: 498 --GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS-----AVALWRKML 550
                     +      L  K       +    +   + + F K+       V LW ++ 
Sbjct: 664 RLDQLKQELTDTWTETHLSPKGTRDRRWHNANISVLVDDEFFDKLDEGNPGVVDLWNQIA 723

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
               +T  P +   D    RSP ++     +  +  +  +++  
Sbjct: 724 QYAHDTADPGLLLSDNARRRSPIKNFITTTNPCVTADTWVHTGD 767


>gi|323448023|gb|EGB03927.1| hypothetical protein AURANDRAFT_6442 [Aureococcus anophagefferens]
          Length = 212

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 14/222 (6%)

Query: 590 LNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
             ++S+E AVC L SINL  H         FD+ KL  T     + L+ V+D+N + +E+
Sbjct: 1   EYTASDEIAVCTLASINLTVHVDGAGDAATFDFAKLRRTAYVVTKNLNKVVDVNYYPVEE 60

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           AK SN  HR +G+G+ G   AL  L  PY S +A  I  +  E I F A+ AS++LAQE 
Sbjct: 61  AKSSNLKHRPVGIGVQGMADALAKLRHPYESDDAKRINRDVFETIYFGAMEASIDLAQEL 120

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           G Y S+ GS   QG+F  D             +  + R  W+ L+ R+   G RNS  +A
Sbjct: 121 GPYDSYAGSPTSQGLFQFDLWN----------VKPSDRWDWEGLRARLGEHGCRNSLLLA 170

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
             PTA+ A I G ++S +P   N+Y +  ++G+F VVN +L+
Sbjct: 171 PMPTASTAQILGNNESFEPFTSNMYTRRVLAGEFAVVNKYLL 212


>gi|154248593|ref|YP_001419551.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthobacter
           autotrophicus Py2]
 gi|154162678|gb|ABS69894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Xanthobacter autotrophicus Py2]
          Length = 1241

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 143/434 (32%), Gaps = 70/434 (16%)

Query: 458 DVEEFLDLRKNTGDDRRRT--HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515
           D+E  +      G+        + N +  + D F++ V  +A W                
Sbjct: 374 DIEVSIYDTDWDGEAYITVAGQNSNNSVRVTDDFLRAVEADADW---------------- 417

Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
                          R + KV + + A  LW K+    +    P I F    N       
Sbjct: 418 -----------NLIRRTDGKVAKTVKARELWEKIGAAAWHCADPGIQFHTTVNDWHTCPA 466

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDN 634
            G + +SN C+E        +   CNL S+NLL       +FD +     +R    VL+ 
Sbjct: 467 AGEIRASNPCSEYMF----LDDTACNLASLNLLQFRDAEKRFDVESYEHAVRLWTVVLEI 522

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
            + +      +  + ++ +R +GLG       L    IPY SP+   I       ++  +
Sbjct: 523 SVLMAQFPSRRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSPQGRAIGGALSAIMTGVS 582

Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSI------------------GLLAEVRDEL 736
            + S E+A E G + ++  +         +                     L      + 
Sbjct: 583 YATSAEMASELGPFPAYSANAQSMLRVIRNHRRAAHGLKDGYEGLSIAPVPLDHVSCPDT 642

Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794
            +   +   WD+     +  G RN+    IAPT TI  +    +  I+P +  + + K  
Sbjct: 643 RLVAHATAAWDKALALGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLA 702

Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERIPDDLKK--------- 843
             G F ++N  +   L+     +  +     Y    GS+     I     +         
Sbjct: 703 GGGYFKIINRAVPEALRTLGYSEAEIAEMEAYAVGHGSLAQAPAINHSTLRTKGFDDAAI 762

Query: 844 -----IHATAFEID 852
                   TAF+I 
Sbjct: 763 AKAEAAVKTAFDIK 776



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 9/88 (10%)

Query: 830 SIGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           ++     +      +   A          +     I   +  Q +I  A S  + + ++ 
Sbjct: 830 TLEGAPFLKAQHLPVFDCASPCGRLGKRYLSVESHIRMMAAAQPFITGAISKTINMPNDA 889

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
           S +     Y  +W + LK     R  S 
Sbjct: 890 SVEDCKAAYLLSWRLALKANALYRDGSK 917


>gi|91790417|ref|YP_551369.1| ribonucleoside reductase [Polaromonas sp. JS666]
 gi|91699642|gb|ABE46471.1| ribonucleoside reductase [Polaromonas sp. JS666]
          Length = 1189

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 152/409 (37%), Gaps = 53/409 (12%)

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
              +   +  L E G   +      +I +   +   VH+     E  L         C+LG
Sbjct: 640  ERFTVTVESLTEEGSEDVFDVTVADIHAFDANGLYVHNCG---EQPLPPY----GCCDLG 692

Query: 604  SINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656
             I L     N         FD+D    ++ T VR LDNV+D+    + + +  +   R I
Sbjct: 693  PIILTRFVRNPFGFNGVPDFDFDAFGKSVTTQVRALDNVLDLTFWPLPQQQAESAAKRRI 752

Query: 657  GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716
            G+G  G  +AL +L + Y +PE  E+A      +   A +ASV LA+E+GA+        
Sbjct: 753  GVGFTGLGNALVMLCLRYDAPEGREMAARIAVCMRDAAYAASVALAKEKGAF-------- 804

Query: 717  DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776
                       L  +    LA    +      L++ ++  G+RNS+ ++IAPT T++   
Sbjct: 805  -----------LKFDAEGYLAPGTFANRLPAGLQQAIRAHGIRNSHLLSIAPTGTVSLAF 853

Query: 777  --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
                S  I+PS+  +Y +               ++    D   E     L    G  G++
Sbjct: 854  ADNASNGIEPSFSWMYRRRKR-----------ESDGSTTDYAVEDHAWRLYRELG--GDV 900

Query: 835  ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893
            +R+P        +A E+     I      Q ++D A S  + +  + +      +Y+QAW
Sbjct: 901  DRLPG----YFVSALEMSAASHIAMMEAVQPFVDTAISKTVNVPVDYAYDDFKGLYQQAW 956

Query: 894  LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
               LK     R  +       T         A P       T     P 
Sbjct: 957  RARLKGLATYRPNAILGAVLETHASAAATPPAAPTPVDPMRTVIESRPK 1005



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 29/298 (9%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTP 356
            +L ++Y            +  + RVA  LA    E  + +    F   L +        
Sbjct: 21  DVLKEKYLKPGENGV----EDLYRRVARALASVEPEAARAEHEALFLENLHAGAIGAGRI 76

Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408
                 +    L +CF+  V D + G+        + AL+E A   +  GG+G D++ +R
Sbjct: 77  MSAAGTSIQATLINCFVQPVGDCIQGMDDGGYPGIYEALREAAETMRRGGGVGYDFSRIR 136

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA +  T   + G   ++ V + +   V   G R+GA    L   H DV EF+  ++ 
Sbjct: 137 PRGAEVKATASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVFEFITAKRT 196

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G    R ++ N +  + D FM+ +  +  W L    +      +    F+ A       
Sbjct: 197 PG----RWNNFNVSVGVSDAFMQALGDDQPWELVHRAK-PGARLIAQGAFQRA------- 244

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                + V++ ++A  LW  ++   ++   P I F D  N  +  ++   + ++N C 
Sbjct: 245 ---DGLWVYQTLAASELWDTVMRSAYDFAEPGILFLDHINQDNNLRYCESIEATNPCV 299


>gi|163795180|ref|ZP_02189148.1| Ribonucleotide reductase [alpha proteobacterium BAL199]
 gi|159179578|gb|EDP64107.1| Ribonucleotide reductase [alpha proteobacterium BAL199]
          Length = 1248

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 142/413 (34%), Gaps = 68/413 (16%)

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            + N +  + D F++ V  +  W                               R + K+
Sbjct: 396 QNSNNSVRVSDEFLQAVEADGDW---------------------------NLIRRTDGKI 428

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
              + A  LW K+    +    P + +    N        G +++SN C+E        +
Sbjct: 429 AATVKANDLWEKIAHAAWACADPGLQYDTTINDWHTCPAGGRINASNPCSEYMF----LD 484

Query: 597 TAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
              CNL S+NL+     +  F+        R     L+  + +     ++  K ++ +R 
Sbjct: 485 DTACNLASMNLMQFQRADGSFNVAAYEHATRLWTVTLEIAVLMAQFPSKEIAKLSYDYRT 544

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG       L  + + Y SP+   +       ++  A + S ELA E GA+  +K + 
Sbjct: 545 LGLGYANIGGLLMAMGLSYDSPKGRAMCGALTAVMTGVAYATSAELAGEIGAFPRYKENA 604

Query: 716 WDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                   +                     L A       +   +R  WD      +  G
Sbjct: 605 ESMLRVIRNHRRAAHGDVTGYESLSITPVPLDAASCPSSELVEAARRAWDSALALGEQHG 664

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDL 815
            RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+    
Sbjct: 665 YRNAQATVIAPTGTIGLVMDCDTTGIEPDFAIVKFKKLAGGGYFKIINRVVPQALQTLGY 724

Query: 816 WDEAMISDLKYH--DGSIGNIERI-----------PDDLKKI---HATAFEID 852
            +  + + ++Y    G++     I           P ++ KI     +AF+I 
Sbjct: 725 DEAEVEAIVRYAVGYGTLKGAPGIGHDTLIAKGFGPAEIVKIEEAVVSAFDIK 777



 Score = 95.3 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 11/165 (6%)

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHA 846
            + +  +      +N    + L         + +   Y  G  ++    ++  +   +  
Sbjct: 788 AFCRETLGFTDEQMNDPAFDMLVALGYSKVEVEAANTYVCGAMTLEGAPKLKAEHLPVFD 847

Query: 847 TAF--------EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897
            A          +     I   +  Q +I  A S  + +    + +     Y  +W +GL
Sbjct: 848 CANPCGRIGKRYLSAESHIRMMAAAQPFISGAISKTINMPNSAAVEDCKEAYILSWRLGL 907

Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
           K     R  S  S   S                   +     + +
Sbjct: 908 KANALYRDGSKLSQPLSASTFDFEDEEEADEFAAQPAAVKAPVVA 952



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 25/230 (10%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY-----DRYFLHINGSRIE 315
            + V+   +   +    +   A       +        + ++        +    G   +
Sbjct: 69  RKKVEENDVPSWLWRETIDEKAQAALPVGERTTGEHSARQVFHRLAGTWTYWGWKGGYFD 128

Query: 316 MPQAFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-------------- 360
             Q        M   L        + +++N    + +    P   +              
Sbjct: 129 TEQDAQAYYDEMCFMLANQMAAPNSPQWFNTGLHWAYGIDGPAQGHHYVDFKTGKLTRSK 188

Query: 361 SGTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
           S   HPQ  +CF+ +V D   +  GI       A L KY  G G++++ +RG    + G 
Sbjct: 189 SAYEHPQPHACFIQSVADDLVNEGGIMDLWVREARLFKYGSGTGSNFSKLRGENESLAG- 247

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
            GKS G++ FLK+ +  A A+  G   R+ A    ++  H D+E +++ +
Sbjct: 248 GGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVSVDIDHPDIEAYIEWK 297


>gi|253572016|ref|ZP_04849420.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           1_1_6]
 gi|251838196|gb|EES66283.1| ribonucleoside-diphosphate reductase subunit alpha [Bacteroides sp.
           1_1_6]
          Length = 524

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 64/325 (19%), Positives = 116/325 (35%), Gaps = 45/325 (13%)

Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
             +   K  K +   R  G+G+      L  L + Y + EA E +++  + ++  A  +S
Sbjct: 56  ERNLWNKIYKKSGQGRRTGVGITAEGDMLAALGLRYGTEEATEFSEKVHKTVALGAYRSS 115

Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758
           VE+A+ERGA+  +              I  LAE                EL   +K  G 
Sbjct: 116 VEMAKERGAFEIYSNER----EQNNPFIQRLAEA-------------DPELYAEMKKYGR 158

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-------------------GDF 799
           RN  C+ IAPT T + +   +  I+P +  +Y +                        ++
Sbjct: 159 RNIACLTIAPTGTTSLMTQTTSGIEPVFLPVYKRRRKVNPNDTNVHVDFVDETGDAFEEY 218

Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859
            V +   V  ++                  S   I+ +        AT+ ++D +  ++ 
Sbjct: 219 IVFHHKFVTWMEANGYDPAKRY--------SQEEIDELVAKSPYYKATSNDVDWLMKVKM 270

Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             R QKW+D + S+ + L ++     ++ +Y +AW  G K     R  S + V  ST   
Sbjct: 271 QGRIQKWVDHSISVTINLPNDVDEDLVNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKSD 330

Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSS 943
               L          +   +     
Sbjct: 331 KKETLPPCKPPTVVETRPRILEADV 355


>gi|219556406|ref|ZP_03535482.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [Mycobacterium tuberculosis T17]
          Length = 413

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 111/490 (22%), Positives = 181/490 (36%), Gaps = 94/490 (19%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202
           K+   DGTL+ F+  R+E  V  A   +      +   V       +  G++  +     
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I                 AR                   +A   ++  +Y          
Sbjct: 64  IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320
                 +       +L   A  L   RD        + +L +RY LH   G   E     
Sbjct: 85  ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137

Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             R A  +A  E + E       A  F  LL +  F+ ++PTL NSGT    L+ CF+  
Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435
           + D L  IF  L + A L +  GG G  ++ +R  G  +  T G + G + FL++ +  A
Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257

Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495
             V+ GG+R+GA  A L+  H D+ +F+  +  +  +       N +  + D F++ V +
Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314

Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555
           N    L +P                              K+  ++ A  L+  +      
Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347

Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615
            G P + F D  N  +P    G + ++N C E+ L         CNLGSINL    A+ +
Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403

Query: 616 FDYDKLASTI 625
            D+D+L    
Sbjct: 404 VDWDRLEEVA 413



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V +R+G +  FD ++I  A+ +A   V       +    D+   + +     L +    
Sbjct: 8   KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             I  +EDIQD VE  L ++G   + R Y++YR+ R+++R A++       +   L
Sbjct: 57  -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111


>gi|289207441|ref|YP_003459507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thioalkalivibrio sp. K90mix]
 gi|288943072|gb|ADC70771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thioalkalivibrio sp. K90mix]
          Length = 1089

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 127/354 (35%), Gaps = 44/354 (12%)

Query: 581  SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNV 635
             ++ C E  L         C LGS+NL    +        FD+++    +R   R+LDNV
Sbjct: 699  CAHNCGEQPLPPD----GACLLGSVNLTRFVSAPFSADTAFDWERFERVVRVFTRMLDNV 754

Query: 636  IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695
             DI+   + + +      R  G+G++G  SAL +L   Y S  A     E    ++  + 
Sbjct: 755  ADISGLPLPEQRAEMLRKRRHGMGILGLGSALAMLGETYGSESAAGFTAEVCRRLALASW 814

Query: 696  SASVELAQERGAYSSFKG----SLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPW-- 746
             A +ELA+E+G           +       P        +   ++      R S      
Sbjct: 815  RAGLELAREKGPAPIMDEGFTLTADMLRRQPALAEAGYQVGDVLKGRELHARFSPYMQHV 874

Query: 747  ----DELKKRVKTIGMRNSNCMAIAPTATIAN--ICGVSQSIDPSYQNLYVKSN-MSGDF 799
                  L   +   G R ++  +IAPT TI+       S  I+P++ +   ++    G  
Sbjct: 875  AVQDPALVAALAEEGARFTHATSIAPTGTISFSVANNASNGIEPTFLHHTTRNIRRPGRR 934

Query: 800  TV--VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857
            T   V+ +    L  R L D                    P+DL     TA  +     I
Sbjct: 935  TREAVDCYSYELLAYRALVDPEAG----------------PEDLPANAITAERVGVDAHI 978

Query: 858  ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
               +  Q W+D A S  L +  +   +    +Y QAW  GLK     R      
Sbjct: 979  RMQAAAQPWVDSAISKTLNVPSDIPFEGFKEVYLQAWRAGLKGCTTYRPNPQAQ 1032



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 22/313 (7%)

Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEF-YNLL 346
           D + +     I  +RY L   +G  ++   +A F RVA  LA  E   ++  +E  +   
Sbjct: 20  DVSLQPSSYSIWAERYQLRDAHGEPVDASMEAMFDRVARALAAVEAPDQRAPIEREFRWA 79

Query: 347 SSFHFMCSTPTLFNSG----TRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLG 401
                + +   L N+G         L +C ++ T+ D L  I  A     +  K   G+G
Sbjct: 80  LDNGAIPAGRILANAGAEAHKPQTTLINCTVSRTIRDSLQAILDANTVAGLTLKAGAGIG 139

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D++ +R  GA + G    + G + F+++ + T   +   G R+GA  A L+  H D+E 
Sbjct: 140 YDFSTLRPKGALVAGAGAPTNGPVAFMQIFDQTCRTIGAAGGRRGAQMATLDIGHPDIER 199

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP--------DEVSDLHDL 513
           F+  ++  G    R    N +  + D F++ V ++  W L  P           SDL   
Sbjct: 200 FILAKRRKG----RLTQFNLSVLVRDAFLEAVERDDEWALAFPLLPVEQDGVPASDLVYR 255

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                E  Y   ++      +    +     LW  ++   ++ G P +   D  N ++  
Sbjct: 256 DWPVVEDGYRVDDQGRVACRVCRRVRA--RELWETLMRSTYDVGEPGVILIDQVNRQNNA 313

Query: 574 QHVGVVHSSNLCT 586
               V+ ++N C 
Sbjct: 314 WFDEVIRATNPCV 326


>gi|213022042|ref|ZP_03336489.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 395

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 175/389 (44%), Gaps = 30/389 (7%)

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           + SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GVIP 
Sbjct: 1   MVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPV 60

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD
Sbjct: 61  MKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 120

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546
           +  +   +NA   LFSP    D+   YGK F     +        +  V +  I+A   +
Sbjct: 121 ITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFF 177

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594
           + +  + FE+G+ +I F+D  N  +P    G ++ SNLC+EI               +  
Sbjct: 178 QTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHI 235

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTH 653
                CNLGS+N+         D   +  T+ TA+R L  V D+ +  ++      N   
Sbjct: 236 GHDISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAAS 290

Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712
            AIGLG M     L    I Y SPEA++  +     I++HA+  S+ LA+ER   ++ F 
Sbjct: 291 HAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFA 350

Query: 713 GSLWDQGVF-----PIDSIGLLAEVRDEL 736
            S +  G +       D     A+VR   
Sbjct: 351 QSRYASGDYFTQYLQDDWQPKTAKVRALF 379


>gi|218294852|ref|ZP_03495706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus aquaticus Y51MC23]
 gi|218244760|gb|EED11284.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Thermus aquaticus Y51MC23]
          Length = 1768

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 49/293 (16%)

Query: 598  AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
              C+LG++NL A+  +  F  ++    + TA+R LDNV+D+N   ++  +++  + R +G
Sbjct: 860  EPCDLGALNLAAYVKDGAFQMEEFRKDVHTAIRFLDNVLDVNRFALKDNEEAAKSLRRLG 919

Query: 658  LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
            LG+MG   AL  + +PYAS EA E   E +  +   AI AS ELA+ERG +  ++     
Sbjct: 920  LGVMGLADALIKMGLPYASEEAREKVYEIISAMREEAIKASEELAKERGPFPLYE----- 974

Query: 718  QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                                     R  +  L  R +     N   + +APT T + + G
Sbjct: 975  -----------------------AHREYFQALGVRPRR----NVALLTVAPTGTTSMLMG 1007

Query: 778  VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK---------QRDLWD-EAMISDL-KY 826
            VS  I+P +     +        +++   V  ++         +   WD E ++ ++ K 
Sbjct: 1008 VSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMEAYPPAPGFAKDGRWDWEKIVEEIQKD 1067

Query: 827  HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID------QAQSL 873
              GS+ N+  +P+ ++K+   A +I P+  +      Q+  D       + S 
Sbjct: 1068 GHGSVQNLPFVPEPIRKVFQCAHDIPPLDHVRMQGVVQRAFDAEGYAANSISK 1120



 Score = 74.9 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 38/246 (15%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL------- 428
           VPDD+ GI  A +E A LA+       D++ +R  GA I G+ G S G + FL       
Sbjct: 206 VPDDMGGIVEAAKEAAALARQGLTPHVDFSLLRPEGAPIRGSGGTSSGPVSFLLEIFDNF 265

Query: 429 ------------------KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
                              V       V QGG R+GA  A L   H D+ +FL  +    
Sbjct: 266 LEWAALGAEEAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKDLDR 325

Query: 471 DD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529
           +         N +  + + FM+ + ++A W +  P EV   +  Y    E  Y     + 
Sbjct: 326 EKAEGDISTFNISVLVTEAFMRALEEDALWPVT-PVEVPGKY--YPYPLEGPYTGKIPKL 382

Query: 530 DRGE------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VH 580
              E           K+ A  LW ++    + TG P + F D  N  S  + +G    + 
Sbjct: 383 PEREDGAKAIPLYGGKVPAKWLWHEIAWHAWATGEPGLIFIDRINELSALKGLGPRYQIR 442

Query: 581 SSNLCT 586
           S+N C 
Sbjct: 443 STNPCF 448



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 871  QSLN-LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLN 924
             S N + L    S + ++  Y +A+  G K     R  S      +V+K + +    K  
Sbjct: 1517 ISHNTINLPNHASVEDVEEAYSEAYRTGCKGITVYRDGSREFQVLTVKKESKETEKAKPQ 1576

Query: 925  AVPVTDPNSSTHSLGIPSS 943
                 +          P +
Sbjct: 1577 EARAEEARLEEAPPRAPKA 1595



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 38/177 (21%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFH 350
           F+     I   +Y    +G  +      F RVA  +A  E    +     +FY L+S+  
Sbjct: 6   FDEHAQAIAKRQYLQPGDGDIL----GMFRRVAREIARPEKPEERAYWEEKFYELMSTKR 61

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLT----TVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
           F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G +  P
Sbjct: 62  FSPGGRILAGAGTAHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNGVNLDP 121

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
            R  G                               +R+    AYL   H D+E+F+
Sbjct: 122 YRSKGNR----------------------------KRREVRGVAYLSAEHRDLEDFI 150


>gi|213420918|ref|ZP_03353984.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 226

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 16/226 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320
           G     L E   + +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172

Query: 321 FMRV--AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           ++ V   +        +      FY+ +S+F     TP +    T 
Sbjct: 173 YILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTP 218


>gi|21686784|ref|NP_663284.1| ribonucleotide reductase 1 [Phthorimaea operculella granulovirus]
 gi|21637100|gb|AAM70317.1| ribonucleotide reductase 1 [Phthorimaea operculella granulovirus]
          Length = 609

 Score =  165 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 109/613 (17%), Positives = 219/613 (35%), Gaps = 84/613 (13%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E  + F +R+   +   + +K +      +LLSS   + S+             ++CF  
Sbjct: 23  EDVEQFTIRMGKQMTNGDEKKSRMVQ---HLLSSASMIPSSAVCQFYNGIKETPNACF-L 78

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            V +  + +   ++E   ++K     G                       +   K  N +
Sbjct: 79  YVFNSNHDVDVKMKEMYNISKIVIK-GTGVGVGADFLRSSSSKGEFQNNFVELCKYLNQS 137

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
                   K +  +  Y+   +I+    L LRK        T ++     +P++FM    
Sbjct: 138 INLSATIRKSR--MAVYVSLHNINSYLCLSLRKQN---NLITPNLFYGLMVPNMFMTMFE 192

Query: 495 QNAGWTLFSPD-----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
                  +  D     +   L++ YG+++E  Y+   +     + +  ++I    L  ++
Sbjct: 193 HEPTAWWYFFDGDYTLDGESLNECYGEKYEKLYKRMVQ-----KGEYRKRIMVRELIGEL 247

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           ++ + E G P+I ++D  N+ + Q+ +G V + NLC EI   S++   + C L ++N+ A
Sbjct: 248 VSCITENGFPYIVWRDYINLYNNQRELGTVQTLNLCAEICQYSTNSFDSHCTLMTLNVAA 307

Query: 610 HFANNQFDYDK------LASTIRTAVRVLDNVIDINCH--------TIEKAKKSNHTHRA 655
              N   D+ +              +  LDN   +            +      +   R 
Sbjct: 308 FCENYPQDWAEIRQDLDCCKIPIDCLPPLDNNNMLAHCFYTAYMSTFVLNFMLGDSKRRE 367

Query: 656 IGLGLMGFQSALHLLH--IPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFK 712
           IG+   G   A+ + +      +    + A    E+I    I ASV   +       +F 
Sbjct: 368 IGVSPTGLFDAICIKYGVEAAYNYAMEKYAGLVSEYIYLGCILASVVFNRRYNVTCVNFS 427

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            S++ +G++  D   +                 W+ L+  +   GM NS   A APTAT 
Sbjct: 428 RSMYARGLYQFDLRHVEP----------VLMQQWNSLRPYMMK-GMANSMVTAQAPTATT 476

Query: 773 ANICGVSQSID-PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + I  V++S+  P    +  K++ SG F     ++                       ++
Sbjct: 477 SLITNVTESVQFPLPGVITTKNSESGRFADTPFYM-----------------------TV 513

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891
             +  I             +     +   +    +IDQ QS+ +     + + +  +Y  
Sbjct: 514 LGVHNIHKH----------VSVRQQVMIYANCAPYIDQTQSVIINCKPENDETMKVLY-Y 562

Query: 892 AWLMGLKT-TYYL 903
            +   LKT  YYL
Sbjct: 563 TYTQKLKTAIYYL 575


>gi|260889745|ref|ZP_05901008.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
 gi|260860351|gb|EEX74851.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
          Length = 315

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 137/333 (41%), Gaps = 44/333 (13%)

Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646
             +N+  EE  +    S NL +       +  ++    + A+  L  V D+ N   +   
Sbjct: 7   SDINAYYEEDTIRRGISCNLGSLNIATVMENKRIKEATKAAIDSLTMVSDLTNIDIVPSI 66

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
           KK+N    ++GLG M     L    I Y S EA++  +     ++F+++  S+E+A+E+ 
Sbjct: 67  KKANDELHSVGLGAMNLHGYLAKNFIMYESKEALDFCNVFFMMVNFYSLERSMEIAKEKG 126

Query: 706 GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
             +  F+ S +  G +    I          + ++ + + +   ++  W  LK++V   G
Sbjct: 127 ETFKDFEKSEYANGNYFDKYITKEYVPQTEKIKQLFEGIYIP--TKEDWANLKEQVMKHG 184

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           + N+  MAIAP  + + I   + S+ P    + V+            +L N+        
Sbjct: 185 VYNAYRMAIAPNQSTSYIMNSTASVMPVVDTIEVREYGDSTTFYPMPYLTND-------- 236

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      + +A++++   +++  S  Q+ +DQ  S  LY 
Sbjct: 237 -----------------------NYFFYKSAYDMNQKNILKLISVIQRHVDQGISTILYT 273

Query: 878 DEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
               S + L  +Y  A  +GLK+ YY R+R AT
Sbjct: 274 KSTDSTRDLARLYIYAHRLGLKSLYYTRTRKAT 306


>gi|55980044|ref|YP_143341.1| ribonucleoside-diphosphate reductase [Thermus thermophilus HB8]
 gi|55771457|dbj|BAD69898.1| ribonucleoside-diphosphate reductase [Thermus thermophilus HB8]
          Length = 2202

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 49/293 (16%)

Query: 598  AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
              C+LG++NL A+  + +F  ++    +RTA+R LDNV+D+N   +   + +    R +G
Sbjct: 1304 EPCDLGAMNLAAYVKDGEFQMEEFRRDVRTAIRFLDNVLDVNKFALPDNEMAAKKLRRLG 1363

Query: 658  LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717
            LGLMG   AL  + +PY S EA     E +  +   AI AS  LA+ERG +         
Sbjct: 1364 LGLMGLADALIKMGLPYDSEEARRKVYEIVSAMREEAIRASEALAEERGPFP-------- 1415

Query: 718  QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
                      L  E R+                        RN   + +APT T + + G
Sbjct: 1416 ----------LYEEHREYFQSLGIKP--------------RRNVALLTVAPTGTTSMLMG 1451

Query: 778  VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK---------QRDLWD-EAMISDL-KY 826
            VS  I+P +     +        +++   V  ++         +   WD E ++ ++ K 
Sbjct: 1452 VSSGIEPVFSPFVWRRIGGEYKPLLHPLFVELMEAYPPAPGFAKEGKWDWEKIVEEIQKD 1511

Query: 827  HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID------QAQSL 873
              GS+ N+  +P+ ++++  +A +I P+  +      Q+  D       + S 
Sbjct: 1512 GHGSVQNLPFVPEAIRRVFLSAHDIHPLDHVRMQGAVQRAFDAEGYAANSISK 1564



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 18/210 (8%)

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV-----ANDTAVAVNQGGKRKG 446
           M+ + +  LG +  P      ++   + +  G I  L +         A  +     R+G
Sbjct: 683 MVLEKAQDLGLEAEPFPFNEYYVRVASVEPGGEILTLDLSVEGNHTYLANGLVSHNTRRG 742

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           A  A L   H D+ +FL  +    +         N +    D F++ V ++  W +  P 
Sbjct: 743 AGMATLSIEHPDLLDFLTAKDLDREKAEGDISTFNISVLATDRFLEAVEKDELWPVT-PI 801

Query: 506 EVSDLHDLYGKEFEIAYE------NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559
           EV   +  Y    E  Y              +       K+ A  LW ++    + TG P
Sbjct: 802 EVPGKY--YPYPVEGPYTGKLPPLPEREDGAKAIPLYGGKVPARWLWHEIAWHAWATGEP 859

Query: 560 WITFKDPCNIRSPQQHVG---VVHSSNLCT 586
            + F D  N  S  + +G    + S+N C 
Sbjct: 860 GLIFVDRVNALSALKGLGERYQIRSTNPCF 889



 Score = 61.4 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 2/73 (2%)

Query: 871  QSLN-LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
             S N + L    + + ++  Y +A+  G K     R  S      +  K    +      
Sbjct: 1961 ISHNTINLPNHATVEDVEAAYTEAYRTGCKGITVYRDGSREFQVLTVKKEAKEEKAGKTP 2020

Query: 929  TDPNSSTHSLGIP 941
             +          P
Sbjct: 2021 EEAKPQEARAHEP 2033



 Score = 46.0 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 67/182 (36%), Gaps = 39/182 (21%)

Query: 289 RD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNL 345
           RD + F+     I   +Y    +G  +      F RVA  +A  E E+E+   E  F+ L
Sbjct: 4   RDGYFFDEHAQAIARRQYLQPGDGDIL----GMFRRVAREIAKAEREEERSKWEEEFFRL 59

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLT----TVPDDLYGIFGALQENAMLAKYSGGLG 401
           ++   F      L  +GT H  L +CF+       P+   GI    ++ A++ K  GG G
Sbjct: 60  MAEKRFSPGGRILAGAGTVHGNLLNCFVQGATENPPESFAGIMEVAKKLALVTKVGGGNG 119

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            +  P R  G                                R     AYL   H DVE+
Sbjct: 120 VNLDPYRSKGKRAR----------------------------RAVEGVAYLSAEHPDVED 151

Query: 462 FL 463
           F+
Sbjct: 152 FI 153


>gi|213583560|ref|ZP_03365386.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 235

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 16/237 (6%)

Query: 157 FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PN 215
            N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I ++  LI ++ P+
Sbjct: 1   INLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPD 60

Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
           Y  + AR  +  LR++                       +  + +E G     L E   +
Sbjct: 61  YQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVELGKYDNHLLEDYTE 109

Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRV--AMGLALK 331
            +   + + + ++RD  F Y  ++ L  +Y     + G   E  Q  ++ V   +     
Sbjct: 110 EEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVVACLFSNYP 169

Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
              +      FY+ +S+F     TP +    T   Q SSC L    D L  I     
Sbjct: 170 RETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSS 226


>gi|119357579|ref|YP_912223.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354928|gb|ABL65799.1| ribonucleoside-diphosphate reductase class II [Chlorobium
           phaeobacteroides DSM 266]
          Length = 1148

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 110/550 (20%), Positives = 197/550 (35%), Gaps = 91/550 (16%)

Query: 363 TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V D   +  GIF      A + K+  G G +++ +R  G       G
Sbjct: 175 YTRPQAHACFIQSVKDDLVNDGGIFDLAVREARVFKFGSGSGTNYSSLRSGGEQ-LSGGG 233

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
            S G++ FLK+ +  A A+  G   R+ A    ++  H DV+ F+D +    D   +   
Sbjct: 234 SSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVDRFIDWKAKEED---KVAS 290

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK---------------------- 516
           +   + I   F++ +   A        E   L  L                         
Sbjct: 291 LVAGSRICSRFLQAIVNEAVENGSDRKENPGLQQLIKNALGRAVPMSYIVRVLALVDQGY 350

Query: 517 ---EFEIAYENYERQAD--------------------------------RGEIKVFRKIS 541
              +F+    NYE +A                                 R   K  + + 
Sbjct: 351 TTLDFDEYDSNYESEAYQTVGGQNSNNTVRVTNAFMKAVENDEIWLLKERTTGKTAKALK 410

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601
           A  LW K+L   ++   P + F    N        G +++SN C+E        +   CN
Sbjct: 411 ARDLWEKILLSAWKCADPGLQFDTTINEWHTCPQSGRINASNPCSEYMF----LDDTACN 466

Query: 602 LGSINLLAHFAN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659
           L S+NL+        +    +L         VL+  + +     +   + ++  R +GLG
Sbjct: 467 LASLNLIHFVDEASGRIKIKELLHASSLWTVVLEISVLMAHFPSKDIARLSYEFRTLGLG 526

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS----- 714
                + L +L IPY SP+A+ IA      ++  A   S E+A++ G ++ +  +     
Sbjct: 527 FANLGTVLMVLGIPYDSPKALAIAGAIGALMTGQAYVTSAEMARDLGTFAGYTANAKDML 586

Query: 715 -------LWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNS 761
                       +   +  GL    R          +   +   WD+  ++ +  G RN+
Sbjct: 587 RVIRNHRRAAHNMSEEEYEGLSVMPRGIDSEYCPKDLFEAAGKVWDDALRKGEKHGFRNA 646

Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
               IAPT TI  +    +  I+P +  + + K    G F +VN  +   L++       
Sbjct: 647 QVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALERLGYTISQ 706

Query: 820 MISDLKYHDG 829
           +    +Y  G
Sbjct: 707 IDDIERYCKG 716



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 11/122 (9%)

Query: 830 SIGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880
           +I     +  +   +   A          I  M  +   S  Q +I  A S  + +    
Sbjct: 808 TIEGAPHLKLEHLPVFDCASSCGKKGLRYIKHMAHVRMMSAVQPFISGAISKTVNMPPTA 867

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940
           +  ++  +Y+ AW   +K     R  S  S   +        L+ V +     S      
Sbjct: 868 TTVEISEVYKSAWQHMVKAITVYRDGSKLSQPLN--NSSYQDLDEVIMLGTEESLDETKG 925

Query: 941 PS 942
           P 
Sbjct: 926 PK 927


>gi|46309417|ref|YP_006307.1| ORF37 [Agrotis segetum granulovirus]
 gi|46200634|gb|AAS82701.1| ORF37 [Agrotis segetum granulovirus]
          Length = 615

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 114/623 (18%), Positives = 227/623 (36%), Gaps = 90/623 (14%)

Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF-NSGTRHPQLSSCF 372
           +E P+ F  R++ G+   + E++K A     L S      S      N        S+C 
Sbjct: 29  VETPEEFCQRISRGMVKLDDEEKKIAHATALLSSVSIIPSSALCQHLNLQRNDTTPSACH 88

Query: 373 LTTVPDDLYGIFGALQ--ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           LT             +    A +A    G+G     +R  G+++          +   + 
Sbjct: 89  LTVFSHSYEAFSKLNELDRIAKMAIMGTGVGVGGDYLRYKGSNVA--GELKNSFVEICQY 146

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
            N          K +  V  +L   HI     L LR+      R T ++     IP+ FM
Sbjct: 147 LNAATTLNVSARKSR--VAVFLSLHHICSMICLTLRQQNA---RVTSNIFYGVMIPNFFM 201

Query: 491 KRVTQNAGWTLFSPD-----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545
           +   ++     +  D     E   L+D YG+E+E  Y          +    +K+ A  +
Sbjct: 202 EMQRKDKNAMWYFFDGNTTLEGLSLNDCYGEEYESLYWRMVE-----KKLYVKKMYATQV 256

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
             ++++ L E G P++ ++D  N+ +  + +G + + NLCTEI  ++ S+ +++C L ++
Sbjct: 257 LGELISCLTENGFPYVVWRDHVNMFNNHRDLGTIQTLNLCTEICQHAGSDSSSMCTLMTV 316

Query: 606 N---------LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN------ 650
           N         L   +     +  +             N   +  H    +  S       
Sbjct: 317 NIAAYCEDYPLCKMYEEIVEELAEYGLHQCCPQFDETNEARLLMHCFTASYTSTFLLNRL 376

Query: 651 ----HTHRAIGLGLMGFQSALHLL--HIPYASPEAVEIADESMEFISFHAISASVELAQE 704
                + R +G+   G   A+++L       +   +  +    E++    + +S+   ++
Sbjct: 377 LGDKTSRRELGVTPTGLFDAVYILCGRDAAYNDAMIHYSALVAEYMYIGCVLSSIVYNRK 436

Query: 705 RG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
                 +F  S + +G+F  D   +            +  L W+ ++  +K  GM NS  
Sbjct: 437 FNVICVNFSKSEFAKGLFQFDLRNVTP----------SLSLLWNRIRPFMKK-GMANSML 485

Query: 764 MAIAPTATIANICGVSQSID-PSYQNLY-VKSNMSGDFTVVNSFLVNELK-QRDLWDEAM 820
            A APTAT + +  V++S+  P    +   K++ +G F  +  FL    +          
Sbjct: 486 TAQAPTATTSLLTNVTESVQFPMSGAVQTTKNSGTGRFANIPFFLYKSNETDIGFNRPVT 545

Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880
           I+                    ++                ++   ++DQ+QS+ +     
Sbjct: 546 IAKQV-----------------QVF---------------AKMAPYVDQSQSVIINCSS- 572

Query: 881 SGKKLDFIYRQAWLMGLKT-TYY 902
           + + +  I R  +   LKT  YY
Sbjct: 573 TYEDVFRILRYTYDNKLKTALYY 595


>gi|221309912|ref|ZP_03591759.1| hypothetical protein Bsubs1_11096 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314235|ref|ZP_03596040.1| hypothetical protein BsubsN3_11022 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319157|ref|ZP_03600451.1| hypothetical protein BsubsJ_10948 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323431|ref|ZP_03604725.1| hypothetical protein BsubsS_11067 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 848

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 49/322 (15%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 557 CNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 611

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
           G M     L   +I Y S EA + A+     ++F+++  S+E+A+E    Y  F GS + 
Sbjct: 612 GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 671

Query: 718 QGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +               + ++  +  +       W +LK+ V   G+ +S   AIAPT
Sbjct: 672 SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQ--DWMKLKEDVMKYGLYHSYRQAIAPT 729

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   +  + P  + +  ++  +         L                       
Sbjct: 730 GSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL----------------------- 766

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
           S  N           +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I
Sbjct: 767 SAQN--------WFFYKEAYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTRDLNRI 818

Query: 889 YRQAWLMGLKTTYYLRSRSATS 910
              A   G+KT YY R++  T 
Sbjct: 819 DLYAHHRGIKTLYYARTKDTTQ 840



 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 2/148 (1%)

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498
             G +R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD F++   ++  
Sbjct: 1   MNGLQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPDKFIELAREDKD 60

Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           + +F P  V   +  Y  E +   E Y+   +   ++  +  +A  L  ++  +  E+G+
Sbjct: 61  YYMFYPHSVYKEYGQYLDELD-INEMYDELVENPRVRKAKG-NARKLLEQLAILRSESGY 118

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           P+I F D  N   P +H+  V  SNLC 
Sbjct: 119 PYIMFADNVNKVHPNEHISKVKFSNLCV 146


>gi|218681258|ref|ZP_03529155.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CIAT 894]
          Length = 441

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 184/456 (40%), Gaps = 32/456 (7%)

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
             L+   + +   L + E        R  L+K R        +   + T      L  + 
Sbjct: 5   ETLDYHALNAMLNLYDDE-------GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKL 56

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313
                E   +  +L +   +F          Y R F F  +LG    Y  Y L   +G R
Sbjct: 57  DYLVTEGYYEQEVLDQYSFNFVRDLFDQA--YARKFRFPTFLGAFKYYTSYTLKTFDGKR 114

Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371
             E  +     VA+ LA  +   E  A +  + + S  F  +TPT  N+G +   +L SC
Sbjct: 115 YLERYEDRICMVALTLARGD---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSC 171

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
           FL  V D++  I  ++     L+K  GG+    T +R  GA I     +S G+IP +K+ 
Sbjct: 172 FLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLL 231

Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491
            D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD+  +
Sbjct: 232 EDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDISFE 291

Query: 492 RVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
               N    LFSP +V  ++            Y      A   +    +KI A   ++ +
Sbjct: 292 LARNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARISK----KKIKAREFFQVL 347

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNL 602
             + FE+G+P+I F+D  N  +P    G +  SNLC+EI         N       +   
Sbjct: 348 AEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVSEASDYNDDLSYKHLGKD 405

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638
            S NL +       D      TI T++R L  V D+
Sbjct: 406 ISCNLGSLNIAAAMDSTDFGKTIETSIRALTAVSDM 441


>gi|7475800|pir||A69927 ribonucleoside-diphosphate reductase (alph) homolog yosO - Bacillus
           subtilis
          Length = 786

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 49/322 (15%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 495 CNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 549

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
           G M     L   +I Y S EA + A+     ++F+++  S+E+A+E    Y  F GS + 
Sbjct: 550 GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 609

Query: 718 QGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +               + ++  +  +       W +LK+ V   G+ +S   AIAPT
Sbjct: 610 SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQ--DWMKLKEDVMKYGLYHSYRQAIAPT 667

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   +  + P  + +  ++  +         L                       
Sbjct: 668 GSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL----------------------- 704

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
           S  N           +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I
Sbjct: 705 SAQN--------WFFYKEAYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTRDLNRI 756

Query: 889 YRQAWLMGLKTTYYLRSRSATS 910
              A   G+KT YY R++  T 
Sbjct: 757 DLYAHHRGIKTLYYARTKDTTQ 778



 Score = 43.3 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
           +F P  V   +  Y  E +   E Y+   +   ++  +  +A  L  ++  +  E+G+P+
Sbjct: 1   MFYPHSVYKEYGQYLDELD-INEMYDELVENPRVRKAKG-NARKLLEQLAILRSESGYPY 58

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCT 586
           I F D  N   P +H+  V  SNLC 
Sbjct: 59  IMFADNVNKVHPNEHISKVKFSNLCV 84


>gi|2708498|gb|AAB92484.1| ribonucleotide reductase homolog [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 661

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 49/322 (15%)

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
           CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 370 CNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 424

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
           G M     L   +I Y S EA + A+     ++F+++  S+E+A+E    Y  F GS + 
Sbjct: 425 GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 484

Query: 718 QGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
            G +               + ++  +  +       W +LK+ V   G+ +S   AIAPT
Sbjct: 485 SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQ--DWMKLKEDVMKYGLYHSYRQAIAPT 542

Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
            +I+ +   +  + P  + +  ++  +         L                       
Sbjct: 543 GSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL----------------------- 579

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
           S  N           +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I
Sbjct: 580 SAQN--------WFFYKEAYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTRDLNRI 631

Query: 889 YRQAWLMGLKTTYYLRSRSATS 910
              A   G+KT YY R++  T 
Sbjct: 632 DLYAHHRGIKTLYYARTKDTTQ 653


>gi|9630286|ref|NP_046713.1| ribunucleotide reductase large subunit [Bacillus phage SPBc2]
 gi|50812254|ref|NP_389888.2| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
            [Bacillus subtilis subsp. subtilis str. 168]
 gi|75077840|sp|O64173|NRDEB_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase nrdEB subunit
            alpha; AltName: Full=Ribonucleotide reductase large
            subunit; Contains: RecName: Full=SPBc2 bnrdE intein
 gi|81341995|sp|O31875|NRDEB_BACSU RecName: Full=Ribonucleoside-diphosphate reductase nrdEB subunit
            alpha; AltName: Full=Ribonucleotide reductase large
            subunit; Contains: RecName: Full=Bsu nrdEB intein
 gi|3025639|gb|AAC13134.1| ribunucleotide reductase large subunit [Bacillus phage SPbeta]
 gi|32468777|emb|CAB13898.2| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
            [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1084

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 49/322 (15%)

Query: 600  CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGL 658
            CNLGS+N++   +N       +AST+R A+  L  V    N        ++N   R+IGL
Sbjct: 793  CNLGSMNIVNVMSN-----QSIASTVRIAIDSLTTVTRKTNIVNAPAVARANTLMRSIGL 847

Query: 659  GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717
            G M     L   +I Y S EA + A+     ++F+++  S+E+A+E    Y  F GS + 
Sbjct: 848  GQMNLHGFLAQNNIAYESEEAKDFANTYFMMVNFYSLQRSMEIARETGETYYKFDGSTYK 907

Query: 718  QGVFPIDS--------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769
             G +               + ++  +  +       W +LK+ V   G+ +S   AIAPT
Sbjct: 908  SGEYFEKYVTNDYSPQYEKVKKLFGDQHIPNIQ--DWMKLKEDVMKYGLYHSYRQAIAPT 965

Query: 770  ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
             +I+ +   +  + P  + +  ++  +         L                       
Sbjct: 966  GSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL----------------------- 1002

Query: 830  SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFI 888
            S  N           +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I
Sbjct: 1003 SAQN--------WFFYKEAYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTRDLNRI 1054

Query: 889  YRQAWLMGLKTTYYLRSRSATS 910
               A   G+KT YY R++  T 
Sbjct: 1055 DLYAHHRGIKTLYYARTKDTTQ 1076



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 164/390 (42%), Gaps = 20/390 (5%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    PN+ K+    +   ++++      K  +    + +  +       +  +     L
Sbjct: 1   MTNTIPNWIKLNNEIM---IQKDGKYQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYL 57

Query: 269 LHESMMDFDL------VYLANDLKYERDFAFEYLGLQI---LYDRYFLHINGS--RIEMP 317
           +     + +         + +  K    + F +         Y+ Y L  N     +E  
Sbjct: 58  IKNDYYEEEFLSKYTFEQIKSIYKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERY 117

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTV 376
           +    RV++          ++AVE  + +    +  +TPT  N+   R  ++ SCFL  V
Sbjct: 118 ED---RVSIVALYCADGDYEKAVEEVHTMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEV 174

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I  A+  +  L+K  GG+  +   +R  G  I      ++GV+  +K+ ++   
Sbjct: 175 GDSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFR 234

Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496
             +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD F++   ++
Sbjct: 235 YADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPDKFIELARED 294

Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556
             + +F P  V   +  Y  E +   E Y+   +   ++  +  +A  L  ++  +  E+
Sbjct: 295 KDYYMFYPHSVYKEYGQYLDELD-INEMYDELVENPRVRKAKG-NARKLLEQLAILRSES 352

Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           G+P+I F D  N   P +H+  V  SNLC 
Sbjct: 353 GYPYIMFADNVNKVHPNEHISKVKFSNLCV 382


>gi|229172091|ref|ZP_04299656.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
 gi|228611434|gb|EEK68691.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
          Length = 284

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 129/309 (41%), Gaps = 40/309 (12%)

Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLH 671
            N  +  ++   +   +  L  V D+         KK+N    ++GLG M     L    
Sbjct: 1   MNVMENKEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNK 60

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DS 725
           I Y S EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D 
Sbjct: 61  IAYESAEAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDY 120

Query: 726 IGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
             +  +V+     ++  ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P
Sbjct: 121 SPVTEKVQQLFEGIHIPTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMP 180

Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844
               +  ++  +        +L  +      W                            
Sbjct: 181 IVSQIESRTYANATTYYPMPYLSKD----TFW---------------------------Y 209

Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903
           + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY 
Sbjct: 210 YKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYT 269

Query: 904 RSRSATSVE 912
           R+R  +  E
Sbjct: 270 RTRKLSVEE 278


>gi|229022913|ref|ZP_04179433.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1272]
 gi|228738448|gb|EEL88924.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1272]
          Length = 281

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|239997054|ref|ZP_04717578.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 268

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 115/273 (42%), Gaps = 12/273 (4%)

Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR-SPQQHV 576
           FE  Y  YE      +    ++I A+ L+   +     TG  ++   D CN        V
Sbjct: 3   FEELYVKYE----NDDSIRKKQIKAMELFSLFMQERASTGRIYLQNVDHCNTHSPFNPEV 58

Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQFDYDKLASTIRTAVRVLD 633
             V  SNLC EI L +   +      G I L              D+       AVR LD
Sbjct: 59  APVRQSNLCLEIALPTKPLQHVNDENGEIALCTLSAFNLGAIKSLDEFEELSDLAVRALD 118

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
           N++D   + +  A  +    R +G+G++ F   L    + Y+   A  +   + E + ++
Sbjct: 119 NLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYLAKNGVKYSDHSANGLVHRTFEAMQYY 178

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753
            + AS  LA+E+GA   F  + + QG+ PIDS     +       N      WD L++ +
Sbjct: 179 LLKASNNLAKEKGACPKFNETTYSQGIMPIDSYKKDLDSV----CNEPLHYDWDALREEI 234

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
           KT G+RNS   A+ P+ T + I   +  I+P  
Sbjct: 235 KTHGLRNSTLSALMPSETSSQISNATNGIEPPR 267


>gi|229029124|ref|ZP_04185221.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
 gi|228732182|gb|EEL83067.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
          Length = 281

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|229095936|ref|ZP_04226912.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
 gi|229102052|ref|ZP_04232764.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228681372|gb|EEL35537.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228687446|gb|EEL41348.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
          Length = 281

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIGYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|229114890|ref|ZP_04244303.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228668582|gb|EEL24011.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
          Length = 281

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIGYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARAFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|229057078|ref|ZP_04196470.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
 gi|228720219|gb|EEL71798.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
          Length = 281

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEVQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|229160404|ref|ZP_04288402.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
 gi|228623128|gb|EEK79956.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
          Length = 281

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|47566241|ref|ZP_00237269.1| ribonucleotide reductase, barrel domain [Bacillus cereus G9241]
 gi|47556794|gb|EAL15125.1| ribonucleotide reductase, barrel domain [Bacillus cereus G9241]
          Length = 281

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESV 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|217958929|ref|YP_002337477.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|229138140|ref|ZP_04266738.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|217068033|gb|ACJ82283.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228645485|gb|EEL01719.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|324325469|gb|ADY20729.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 281

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|52143987|ref|YP_082842.1| ribonucleoside-diphosphate reductase, alpha subunit, C-terminal
           region [Bacillus cereus E33L]
 gi|228984528|ref|ZP_04144705.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155019|ref|ZP_04283133.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|229195649|ref|ZP_04322415.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|51977456|gb|AAU19006.1| ribonucleoside-diphosphate reductase, alpha subunit, C-terminal
           region [Bacillus cereus E33L]
 gi|228587898|gb|EEK45950.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|228628577|gb|EEK85290.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|228775231|gb|EEM23620.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 281

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 127/303 (41%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E A      +++++I  S+E+A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFARTFFMMLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     ++  ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIHIPTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|330903418|gb|EGH33990.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 160

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 124/159 (77%), Positives = 137/159 (86%), Gaps = 1/159 (0%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
           NGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTH
Sbjct: 2   NGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTH 61

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKV 536
           DMNTANWIPDLFMKRV  +  WTLFSP EV DLHDL GK F+  YE YE      G+IK+
Sbjct: 62  DMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKL 121

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575
           F+ I A  LWRKML+MLFETGHPW+TFKDPCN+RSPQQH
Sbjct: 122 FKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQH 160


>gi|218661576|ref|ZP_03517506.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           IE4771]
          Length = 569

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 127/353 (35%), Gaps = 42/353 (11%)

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           + + A  LW  +    + +  P I F    N        G +  SN C+E        + 
Sbjct: 2   KTLKARDLWETISYAAWASADPGIHFNTTMNDWHTSPAGGPIRGSNPCSEYMF----LDD 57

Query: 598 AVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655
             CNL S+NLL     A  + +       +R    VL+  + +     ++  + ++ +R 
Sbjct: 58  TACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLEVSVMMAQFPSKRIAELSYEYRT 117

Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715
           +GLG       L    IPY S EA  IA      ++    + S E+A E G + +F  + 
Sbjct: 118 LGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGICYATSAEMAAELGPFPNFAPNR 177

Query: 716 WDQGVFP------------------IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
                                    ID + L+     +  +   ++  WD+  +  +  G
Sbjct: 178 ESMLRVIRNHRRAAYAETSGYEALSIDPVALIHSENPDQDLAAHAKSAWDKALELGEQHG 237

Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDL 815
            RN+    IAPT TI  +    +  I+P +  + + K    G F ++N  +   L+    
Sbjct: 238 YRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGY 297

Query: 816 WDEAMISDLKYH--DGSIGNIERI-PDDLKKI-------------HATAFEID 852
            +  +     Y    G++     I P  LK                 +AF+I 
Sbjct: 298 SESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGLTDEKVEAVNAALKSAFDIK 350



 Score = 95.3 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      ++    + L       + + +   +  G  ++     +  +   +   
Sbjct: 362 FLKETLKVSDEQLSDMSFSLLDHMGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 421

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 422 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLK 481

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 482 ANALYRDGSK 491


>gi|145639185|ref|ZP_01794792.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
 gi|145271747|gb|EDK11657.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae PittII]
          Length = 256

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 113/278 (40%), Gaps = 42/278 (15%)

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           +S+   R++G+G++ +   L    + Y+   A ++   + E I ++ + AS+ LA+E+GA
Sbjct: 5   RSSLARRSLGIGVINYAYYLAKNGVRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGA 64

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
              F  + + +G+ PID+     +              W+ L+K ++  G+RNS   A+ 
Sbjct: 65  CEYFNETTYAKGILPIDTYKKDLDA----LTQEPLHYDWESLRKDIQEFGLRNSTLTALM 120

Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           P+ T + I   +  I+P   ++ +K++  G    V     N      + +  ++ D+  +
Sbjct: 121 PSETSSQISNATNGIEPPRGHVSIKASKDGILKQVVPEYENL-----MDNYELLWDIPSN 175

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EP 880
           DG +                                QK++DQA S N   D       + 
Sbjct: 176 DGYLH--------------------------LVGIMQKFVDQAISANTNYDPKRFEDGKV 209

Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918
             K L      A+  GLKT YY  +R      +  L  
Sbjct: 210 PMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQEDLDD 247


>gi|229021468|ref|ZP_04178075.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1273]
 gi|228739830|gb|EEL90220.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1273]
          Length = 268

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 40/293 (13%)

Query: 629 VRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A    
Sbjct: 1   MEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAYESAEAKEFARTFF 60

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNR 740
             +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++ 
Sbjct: 61  MMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHI 120

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W  LK++VK  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +    
Sbjct: 121 PTKEDWTSLKEQVKKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTY 180

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               +L  +      W                            + ++++++   LI+  
Sbjct: 181 YPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLI 209

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 210 AEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 262


>gi|196020388|ref|XP_002119099.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens]
 gi|190576963|gb|EDV18415.1| hypothetical protein TRIADDRAFT_63062 [Trichoplax adhaerens]
          Length = 300

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 101/314 (32%), Positives = 146/314 (46%), Gaps = 41/314 (13%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           + Y RD      G  +L DRY L       E  Q  F+RVA   A    + +  A   Y+
Sbjct: 21  VDYSRDQNLSESGKAMLLDRYLLEN-----ESYQDLFVRVATHYA----DNKNHAQRLYD 71

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S F FM +TP L N G +     SCFL  V D L  I     EN  LA   GG+G  W
Sbjct: 72  YMSKFWFMPATPVLSNGGAKRGLPISCFLNEVGDGLKEIVEIWNENVWLASRGGGIGTFW 131

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             VR +G  +   +G++ G++PFL V +   +A++QG  R+G+   YL   H ++EEF +
Sbjct: 132 GNVRSIGEKVAN-SGRTSGIVPFLSVQDRLTLAISQGSLRRGSAAVYLPVSHPEIEEFTE 190

Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           LR+ TG D  RRT +++    I D FM  V  +  W L SP + S +             
Sbjct: 191 LRRPTGGDPNRRTLNLHHGVVITDKFMYAVENDLPWELVSPKDNSIISI----------- 239

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVH 580
                           + A  +W ++L    ETG P++ F D  N     S ++H   + 
Sbjct: 240 ----------------VKARDIWIRILLARIETGEPYLLFIDNVNKNAPDSYKRHNMEIK 283

Query: 581 SSNLCTEITLNSSS 594
           +SNLC+EITL +  
Sbjct: 284 TSNLCSEITLATGK 297


>gi|328553046|gb|AEB23538.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 310

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 130/327 (39%), Gaps = 40/327 (12%)

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNH 651
             +E  +    S NL +    N      +AST+R A+  L  +    N        ++N 
Sbjct: 7   YDKEDEIGLDISCNLGSMNIVNVMSNQSIASTVRIAIDSLTTITRKTNIVNAPAVARANT 66

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710
             R+IGLG M     L    IPY S EA + A+     ++F+++  S+E+A+E    Y  
Sbjct: 67  LMRSIGLGQMNLHGFLAQNKIPYESEEAKDFANTYFMMVNFYSLQRSMEIAKETGETYYK 126

Query: 711 FKGSLWDQGVFPI-----DSIGLLAEVRDELAMNRTSR-LPWDELKKRVKTIGMRNSNCM 764
           F GS +  G +       D      +V++            W +LK+ V   G+ +S   
Sbjct: 127 FDGSTYKSGEYFDKYVTNDYSPKYQKVKNMFGDQHIPNIEDWMKLKEDVMKYGLYHSYRQ 186

Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824
           AIAPT +I+ +   +  + P  + +  ++  +         L                  
Sbjct: 187 AIAPTGSISYVQSSTAGVMPIMERIEERTYGNSKTYYPMPGL------------------ 228

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883
                S  N           +  A+++D   +++  +  Q+ +DQ  S  L+L +  + +
Sbjct: 229 -----SAQN--------WFFYKEAYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTR 275

Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATS 910
            L+ I   A   G+KT YY R++  T 
Sbjct: 276 DLNRIDLYAHHKGIKTLYYARTKDTTQ 302


>gi|306825285|ref|ZP_07458627.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432721|gb|EFM35695.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 421

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 160/396 (40%), Gaps = 19/396 (4%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           +E L   +K+           +  +     IE         +      L  L   +K + 
Sbjct: 32  KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFLKKYRPEFLEELHQFIKDQN 90

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
                ++     Y++Y L  N     + ++   RV           E  A++  N +   
Sbjct: 91  FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIHQ 149

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TP+  N+G     +L SCFL  V DD+  I  ++     L++  GG+G   + +R
Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             GA I G  G + GV+P +K+  D+    NQ G+R+GA   YL  +H D+  FL  +K 
Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             D++ R   ++    +PD F +   +N    LFSP  V   + +    +    E Y+  
Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
                I+  + I A  L  ++  +  E+G+P++   D  N  +P    G +  SNLC+EI
Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385

Query: 589 TLNS------------SSEETAVCNLGSINLLAHFA 612
                                  CNLGS N++    
Sbjct: 386 LQVQEPSLINDAQEFLQMGTDVSCNLGSTNVVNMMT 421


>gi|222095085|ref|YP_002529145.1| ribonucleoside-diphosphate reductase alpha chain, c-terminal region
           [Bacillus cereus Q1]
 gi|221239143|gb|ACM11853.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal region
           [Bacillus cereus Q1]
          Length = 268

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 124/293 (42%), Gaps = 40/293 (13%)

Query: 629 VRVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           +  L  V D+         KK+N    ++GLG M     L    I Y S EA E A    
Sbjct: 1   MEALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFF 60

Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNR 740
             +++++I  S+E+A+E+   +  F  S +  G +       D   +  +V+     ++ 
Sbjct: 61  MMLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHI 120

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            ++  W  LK++V+  G+ NS  +AIAPT +I+ +   + S+ P    +  ++  +    
Sbjct: 121 PTKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTY 180

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               +L  +      W                            + ++++++   LI+  
Sbjct: 181 YPMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLI 209

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
           +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +  E
Sbjct: 210 AEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 262


>gi|229084443|ref|ZP_04216722.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
 gi|228698871|gb|EEL51577.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
          Length = 281

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 40/303 (13%)

Query: 619 DKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677
            ++   +   +  L  V D+         KK+N    ++GLG M     L    I Y S 
Sbjct: 4   KEIREAVHAGMEALTAVSDMTVIPNAPTVKKANDELHSVGLGAMNLHGYLSKNKIAYESA 63

Query: 678 EAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAE 731
           EA E        +++++I  S+ +A+E+   +  F  S +  G +       D   +  +
Sbjct: 64  EAKEFVRTFFMMLNYYSIEKSMGIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEK 123

Query: 732 VRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
           V+     +   ++  W  LK+ V+  G+ NS  +AIAPT +I+ +   + S+ P    + 
Sbjct: 124 VQQLFEGIYIPTKEDWTSLKEEVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIE 183

Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850
            ++  +        +L  +      W                            + ++++
Sbjct: 184 SRTYANATTYYPMPYLSKD----TFW---------------------------YYKSSYD 212

Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909
           ++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  A   GLK+ YY R+R  +
Sbjct: 213 MNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLS 272

Query: 910 SVE 912
             E
Sbjct: 273 VEE 275


>gi|38639970|ref|NP_943925.1| NrdA-B aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414659|gb|AAQ17702.1| NrdA-B aerobic NDP reductase large subunit [Aeromonas phage Aeh1]
          Length = 323

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 133/333 (39%), Gaps = 54/333 (16%)

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
              E ++C L + NL A        Y+   +  R AVR LDN++D   + + +A  +   
Sbjct: 24  DVSEISLCTLAAYNLGAIEG-----YEDFLNVARAAVRALDNLLDYQDYPVVQAL-AAKK 77

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            RA+G+G+  F   L    + Y+S  A ++   +ME + F  + AS+ELA+ERGA     
Sbjct: 78  RRALGMGVTNFAYFLAKNFVNYSSGNANKLVHRTMEMMQFANLVASMELAKERGANEWHH 137

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
            + W  G+ PID      +      +    ++ W+ L+  +K  G+RN    A  P  + 
Sbjct: 138 KTKWADGLLPIDWYNKNVDNI----VPNDLKMDWEWLRAEIKQHGLRNDTLSAFMPCESS 193

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832
           + I   +  I+P    +  K +  G F  +   +                          
Sbjct: 194 SQITNSTNGIEPPRGLVSTKQSKDGVFNQLVPEV-------------------------- 227

Query: 833 NIERIPDDLKKIHATAFEID---PMWLIESASRRQKWIDQAQSLNLYLDEP-------SG 882
                 D L   + TA+++        ++  +  QK++DQ  S N Y D           
Sbjct: 228 ------DMLGSEYETAWQMTKHGMKGYLDIVAIMQKFVDQMISANTYYDPAVYPGEKIPM 281

Query: 883 KKLDFIYRQAWLMGLKTTYY--LRSRSATSVEK 913
           K +     +A   G+K+ YY   R  +  + E+
Sbjct: 282 KVVLKDISRAQKHGVKSLYYSNTRDGADGTEEQ 314


>gi|316969145|gb|EFV53297.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 208

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L          +E++ +++  + GSI +IE IP ++++++ T +EI    +I+ A+ R  
Sbjct: 36  LEERFGGMVFGEESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGA 95

Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918
           +IDQ+QSLN+++ EP+  KL  ++   W  GLKT  YYLR++ A +  + T+  
Sbjct: 96  FIDQSQSLNIHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTVDK 149


>gi|327439699|dbj|BAK16064.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 661

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 114/586 (19%), Positives = 198/586 (33%), Gaps = 105/586 (17%)

Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMG 327
           +   +       +K + D+     G +              IE P   F      R A G
Sbjct: 81  IHSINPEKNTALIKIDEDYRHVLEGEEQ-ETGIIERSLD-IIEKPLEIFYEQIAKRNATG 138

Query: 328 L---ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYG 382
           L      E ++++   +FY  L S +F+ +   ++ +G+       +C++   V D   G
Sbjct: 139 LASVEKTEEKRKEWFGKFYEELVSMNFIPAGRVIYGAGSETEVTFFNCYVMPFVADSREG 198

Query: 383 IFGALQENAMLAKYSGGLG-----------------------NDWTPVRGLGAHIHGTNG 419
           I    ++   +    GG+G                         W        H+    G
Sbjct: 199 ISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGG 258

Query: 420 KSQGV-IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN---------- 468
             +G  +  L   +   V       +   +  YL   + + E  + L K           
Sbjct: 259 SRRGAQMIMLADWHPDIVEFIISKMQNPRILRYL-IENTEDESIIRLAKEKLKFKPLTQQ 317

Query: 469 ------------------------TGDDRRRTHD--------------MNTANWIPDLFM 490
                                     D   +  D               N +  +   FM
Sbjct: 318 EDAMYQGIVNYKNIEGFGGFNEAIIRDAETKLRDGGTYSVHNPDFLTGANISVTLTKEFM 377

Query: 491 KRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
             V  +  + L  P   +        Y +++    +  E +     ++ +R I A  LW 
Sbjct: 378 DAVENDEDFELRFPDVENYTPAQMLDYNEKWHEVGDVREWEKLGYPVRTYRTIKAKELWN 437

Query: 548 KMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606
            +         P I F D  N  +  + +   V ++N C E  L       +VCNL ++N
Sbjct: 438 LINVCATYAAEPGIFFIDNANDMTNAKAYGQKVVATNPCGEQPLAPY----SVCNLAAVN 493

Query: 607 LLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664
           L           D+D L  T++  VR+ DNVID   + +E+ KK     R +GLG+MG  
Sbjct: 494 LAKFAKKETKTVDFDALRKTVKVGVRMQDNVIDATPYFLEENKKQALGERRVGLGVMGLA 553

Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724
             L      Y S E   + DE  + I+  A   SVELA ERG++   +G           
Sbjct: 554 DLLIYCEKEYGSEEGNALVDEIFKTIAVAAYEESVELATERGSFPFLEG----------Q 603

Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           +    A +R+        +     +++ +   G+RNS+ + +APT 
Sbjct: 604 TEAETARLREAFINTGFMKKMPQHIRENIVANGIRNSHLLTVAPTG 649


>gi|329729596|gb|EGG65997.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 493

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 181/460 (39%), Gaps = 28/460 (6%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 44  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 103

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679
                  +K+N    ++GLG+M     L    +  +  + 
Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKLVMSQKKQ 485


>gi|269941514|emb|CBI49912.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
            aureus TW20]
          Length = 1091

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 146/403 (36%), Gaps = 64/403 (15%)

Query: 529  ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            A+  EIK   K       ++    L   G         C       HV  +   N   E+
Sbjct: 728  AEITEIKYIGKEDVYDTTQEDYHSLIFNG----IVTGNCTEIFQYMHVSDIKDYNEQDEL 783

Query: 589  TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD-NVIDINCHTIEKAK 647
                      +CNL S+N++      +        +IRT +R L     +     +    
Sbjct: 784  GQ------DIICNLASLNMVKSIEEKEI-----EESIRTGMRALTFVANNSRIEHLPTVH 832

Query: 648  KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RG 706
            K+N  +RA+GLG+M F S      I Y S E++++ +     + ++++  S+++A E   
Sbjct: 833  KANKNNRAVGLGVMSFHSMCAKNKIRYGSEESLDLLNVYCMMMDYYSLDESMKIAVERND 892

Query: 707  AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS--------------RLPWDELKKR 752
             +  F  + +                R    +   +              +  W  L + 
Sbjct: 893  KFYGFDQTDYKAKDDKEFGEYFYKNNRVTKNVEPITPKIKEIFKGIYIPTKEDWQRLARE 952

Query: 753  VKTIGMRNSNCMAIAP--TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
            V   G+ NS  ++IAP  T +I+ I   S ++ P    +  +   + +      +L    
Sbjct: 953  VDKNGLYNSYRLSIAPYRTQSISYITNCSSALTPVVDVVEKRKYGNSETYYPMPYLS--- 1009

Query: 811  KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                       P+ +     TAF+I    +I  A+  QKWIDQ 
Sbjct: 1010 ---------------------------PETMWFYSPTAFDIPQEHIINVAAVAQKWIDQG 1042

Query: 871  QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             S  L+++ E    KL  +Y  A   GLK+ YY R++  +  E
Sbjct: 1043 VSTILFVNSEIETNKLARLYAYAHDRGLKSLYYTRNKLISIAE 1085



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 139/332 (41%), Gaps = 6/332 (1%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315
           RY+ E      + +   +  L+ L +           ++     YD Y L        +E
Sbjct: 51  RYLVEEDYYIDVFKDYSEETLLELLDYAYSFGFEFQSFMAASKFYDTYALKTRDKSQWLE 110

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLT 374
             +   + V++ LA  +      A  +    +      +TPT  N+      +L+SC+L 
Sbjct: 111 DFEQHNVIVSLYLAGGD---VDLAKRYIKAHTLQTVQTATPTYLNAGRKHRGELASCYLF 167

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
           T+ D L  I     + +  +K +GG+  + T +RG GA + G     +G++P  K+    
Sbjct: 168 TMDDTLNSINFIRSQVSQASKIAGGVAVNLTRLRGRGATLKGVKNVGKGIVPVAKLIEGE 227

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               +Q G+R GA  AYL  +H DV E L+ +K   D+  R   ++    +P LF     
Sbjct: 228 VSYADQLGQRAGAGAAYLNIFHSDVIELLNTKKVNADEDTRLATLSIGLIVPSLFFDLAK 287

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           ++    +F P  + +         +I   ++  +    E  +  KI+A  +   +  +  
Sbjct: 288 EDKDLYMFEPYSIQEEFGKDVILDDININDWYDKFVENENVIKHKINAREMLNLIAQIQL 347

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           ++G+P+I +KD  N       +G +  SNLC 
Sbjct: 348 QSGYPYIMYKDNANKNHALNELGEIKMSNLCV 379


>gi|167579176|ref|ZP_02372050.1| hypothetical protein BthaT_13605 [Burkholderia thailandensis TXDOH]
          Length = 361

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 144/387 (37%), Gaps = 48/387 (12%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  LWR++++   +   P + F D      P +    + + + C    L    
Sbjct: 5   WTYASVPARHLWREIVSAARDGAGPGLVFVDAIAAADPLRGHERIGAMSPCGAQPLPPY- 63

Query: 595 EETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N         FD+    + +R  VR+LDN +D+    +    
Sbjct: 64  ---GSAMLGAIDLSRFVRNPFGAGGEPRFDFAGFDTAVRVEVRLLDNALDVTRWPLAAHA 120

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 121 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRNHAYAASAELAAERGA 180

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y                    L + +  L   R        +   ++  G+RNS+  + A
Sbjct: 181 YP-------------------LCDRQAHLDALRAGPPLPHSVCHAIERDGLRNSHLTSFA 221

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           P A ++   G   S  I+P+   +  ++  +G  T     +  E     L+         
Sbjct: 222 PVAGVSLAFGDNCSPGIEPARAWIEHRTVRAGAGTSGAPGMRAENHAHRLFRSLRGER-- 279

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                          L    AT  ++ P   +   +  Q ++D      L L    S ++
Sbjct: 280 -------------AALPDYFATDADVSPSDRLAMRAALQPYVDAGIENTLTLASHYSLEE 326

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSV 911
           ++ +   AW   LK+    R+  A   
Sbjct: 327 VNALLFAAWRAKLKSVAIRRTDLARDA 353


>gi|282916073|ref|ZP_06323836.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus D139]
 gi|282320021|gb|EFB50368.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus
           aureus subsp. aureus D139]
          Length = 493

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 102/451 (22%), Positives = 178/451 (39%), Gaps = 28/451 (6%)

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
           ++       + ++  +      Y   F  Y E  +     +   + F+     +  K+ +
Sbjct: 61  KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349
           D+A +        + Y  H               VA+         + +A +F + +   
Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165

Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
            +  +TPT  N+G     +L SCFL  V D L  I         L+K  GG+  + + +R
Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
             G  I G  G ++GV+P  K         +Q G+R GA   YL  +H DVEEFLD +K 
Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527
             D+  R   ++T   +P  F     +   + +F+P  V + + +   + +   Y +   
Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
                E K     +A  +   +     ++G+P++ FKD  N   P  ++G +  SNLCTE
Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402

Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639
           I         N    E  +    S NL +    N  +  K   ++ + +  L  V D+ N
Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670
                  +K+N    ++GLG+M     L   
Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKK 493


>gi|14602364|ref|NP_148911.1| ORF127 RR1 [Cydia pomonella granulovirus]
 gi|14591882|gb|AAK70787.1|U53466_127 ORF127 RR1 [Cydia pomonella granulovirus]
          Length = 624

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 133/667 (19%), Positives = 234/667 (35%), Gaps = 99/667 (14%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC--F 372
           E P  F  R++  L      K        +LLSS   + S+    +  T     S+C  F
Sbjct: 27  ESPDQFVHRMSRLLTNNHPTKSDAV---AHLLSSVSLIPSSSLCHHFNTGDGIPSACCLF 83

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
           + +   ++   F  L   A +A    G+G     ++                + F K  N
Sbjct: 84  VFSKDHNVDAKFEELTRIARVAIKGTGVGIGADSLKNKST-TRAPGELRNTYVDFCKSLN 142

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
                     + + AV   L         FL    N   +     ++     +PDLF+++
Sbjct: 143 HLINLSVTVRQSRVAVYVSLHNTTAYESLFLRQTGNIQTE-----NIFYGIMVPDLFVRK 197

Query: 493 VTQNAGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
             +   W  F  D   +   L+D YG+E+E  YE   R          + ++   LW ++
Sbjct: 198 QKEGGVWHFFDNDAQVDGKSLNDCYGEEYERLYEEMVR-----RGIQIKSVNVWELWGEI 252

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----SEETAVCNLGSI 605
           +  L   G+P+I ++D  N  + QQ +GVV + NLC E+  +++       T++C L ++
Sbjct: 253 VNCLATNGYPYIVWRDTVNKYNNQQALGVVKTLNLCAEVCQHATDSTVDTNTSLCTLMTL 312

Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNV-----IDINCHTIEKAKKSN---------H 651
           N+ A   +    +  +   +R        +       I  H       S           
Sbjct: 313 NVAAFCEDYTQHWHLIYDDLRQCQIPEQCIPPLGENKILDHCFYGGYMSTFVLNCVLGES 372

Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAV--EIADESMEFISFHAISASVELAQERG-AY 708
             R IG+   G   ALH+++   A+ E    + +    E+I    +  SV   +  G   
Sbjct: 373 KRREIGVSPTGLFDALHIMYGAAATYEYAMDDYSARVAEYIYLGCVVGSVVYNRLYGVEC 432

Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768
            +F+ S + +GVF  D  G+            +  L W  ++      GM NS     AP
Sbjct: 433 VNFRASRFSEGVFQFDLRGVTP----------SLTLQWACIRPHAMR-GMANSMLTTQAP 481

Query: 769 TATIANICGVSQSI-DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827
           TAT + I  V++S+  P    +  K++ +G F                          Y 
Sbjct: 482 TATTSQITNVTESVQYPLPGRITTKNSETGRF---------------------ADLPFYA 520

Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
             +     R P            + P+  I+  +    ++DQ+QS  +Y  EP   ++  
Sbjct: 521 HFTNQPPSRHP-----------HVSPLRQIKVYANTAPYVDQSQSTIIYC-EPKNDEISK 568

Query: 888 IYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946
           +        LKT  YYL   S T   +                      +   +  + + 
Sbjct: 569 VLVYTHKAQLKTGVYYLTYISPTRYIQL-------------GNGDEEQEYYEQVKRARSK 615

Query: 947 DTECEVC 953
              C+ C
Sbjct: 616 FGGCDGC 622


>gi|288573496|ref|ZP_06391853.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569237|gb|EFC90794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 994

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 126/388 (32%), Gaps = 65/388 (16%)

Query: 595 EETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649
                CNLGS+NL A  ++       FD D     +  +V  LD VID   + +E+    
Sbjct: 481 PNYTSCNLGSVNLEAFVSSESSGEAVFDMDSFVDQVFRSVYYLDLVIDATSYPLERIADR 540

Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709
               R +GLGLMG   A  +L I Y S             ++  A++A+V +  E G   
Sbjct: 541 TKMIRPVGLGLMGLADAAIMLGISYGSESFNRFCRSLGGTMASAALAATVRIVSEEGKDP 600

Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI------------- 756
             +  L  + +        L +  D   + R     + EL +R++               
Sbjct: 601 FPEHRLVSELMESFRCEAGLPDAVDRW-LERMDEGGFRELLERMRRTDTVPYTLVNTLEA 659

Query: 757 --------------------------GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790
                                      MRNS  +++APT +I+ +   S  I+P++   +
Sbjct: 660 LLSAASVHKGDGMGLVREVLEALFSGRMRNSRRLSVAPTGSISMLLDASPGIEPNFAWSW 719

Query: 791 VKSNMSGD---FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847
            +  MS           +    +            + +   G       I D       T
Sbjct: 720 SRKVMSSTGDGGYETREYFHRLM------TAEHKDEFRRTGG-------ISD---PRFVT 763

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A++I     +E        +D   S  + L  E +   +  +Y   + MG K     R  
Sbjct: 764 AYDIGTDSHVEVTGIFAAVVDSGISKTVNLPSEATVDDVRRVYEDCYRMGCKGITIYRDG 823

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS 934
           S +       K  + +   +        
Sbjct: 824 SRSDQPIEAKKSDEPEKRHLSSKVKERP 851



 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG-TNGKS 421
           T   QL +CF+ +V D + GIF ++++ A+++KY GG+G ++  +R  G+ I G T GK+
Sbjct: 146 TESQQLFACFVISVEDSIEGIFDSVKDAAVISKYGGGVGGNFGNLREFGSDIKGGTGGKA 205

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
            G + F++  N     V QGG+R+ A+   L   H DVE F+D +     +  +    N 
Sbjct: 206 SGPVSFMETWNTMGSVVVQGGRRRAALMGMLYDDHPDVERFMDAKV----EDGKLPYFNI 261

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
           +  + D  + +  Q   + L S  +                             V + + 
Sbjct: 262 SVSVSDELLTKAAQGGDFHLRSRAD---------------------------GSVAKTVK 294

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCT 586
           A  LW K+    +  G P + F D  N+ +  +      + S+N C 
Sbjct: 295 AADLWNKLCRNAWRRGDPGVFFGDRANVDNILKKAPQWRIESTNPCV 341


>gi|46092514|dbj|BAD14377.1| hypothetical protein [Solanum melongena]
          Length = 169

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           +I GTNG S G+IP L+V NDTA  V+QGG KRKGA   YLE WH D+ EFLDLRKN G 
Sbjct: 1   YIRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHSDIFEFLDLRKNHGK 60

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
           +  R  D+  A W+PDLFM+RV  N  W+LF P+E   L D +G++FE  Y  YER    
Sbjct: 61  EEHRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGEDFEKLYTKYER---- 116

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
            E K  + + A  LW ++L    ETG P++ +KD CN +S QQ++G + SSNLC
Sbjct: 117 -EGKAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIKSSNLC 169


>gi|309789877|ref|ZP_07684455.1| ribonucleotide-diphosphate reductase subunit alpha [Oscillochloris
           trichoides DG6]
 gi|308228084|gb|EFO81734.1| ribonucleotide-diphosphate reductase subunit alpha [Oscillochloris
           trichoides DG6]
          Length = 306

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 17/300 (5%)

Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYN 344
              +   +L  RY +    G   E P+  F RVA  +A  +          + R   FY+
Sbjct: 11  LSEIARTVLKKRYLIKDEQGKVTETPETMFQRVAETIAGIDARYGATPSQVKARTETFYH 70

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
           +++   F  ++PTL N+G     LS+CF+  V D L  I+  ++  A++ +  GG G  +
Sbjct: 71  MMTQGLFEPNSPTLMNAGRPLGMLSACFVLPVDDSLESIYETMKHAALVHQSGGGTGFSF 130

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R     +  T G + G + F++V N +  A+ QGG R+GA    L   H D+  F+ 
Sbjct: 131 SRLRPHNDIVRSTMGVASGPVSFMEVYNYSTEAIKQGGTRRGANMGILRCDHPDILHFIS 190

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
           +++    D  R  + N +  I D FM+ V  +  + L +P        L         ++
Sbjct: 191 VKQ----DLSRVTNFNISVAITDAFMQAVANDEEYNLLNPRT-----GLVQLAVREPLKH 241

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
                   E     ++ A  ++  ++     TG P + F D  N  +P   +G   ++N 
Sbjct: 242 PFTGEVLVEANQPMRLRARVVFDLIIQCAHATGEPGLFFVDRTNEGNPVPALGEYEATNP 301


>gi|182682908|ref|YP_001837032.1| ribonucleoside diphosphate reductase 1 alpha chain [Enterobacteria
           phage EPS7]
 gi|182630620|gb|ACB97552.1| ribonucleoside diphosphate reductase 1 alpha chain [Enterobacteria
           phage EPS7]
          Length = 409

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 142/412 (34%), Gaps = 41/412 (9%)

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAM 326
           +   + D     L   + ++RD  F   GL+  +D+Y       G   E PQ  +M +AM
Sbjct: 1   MSAWISDDQFDALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYMGMAM 60

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            +  +       A++ YN +S       TP L    +     +SC L    D L  I  A
Sbjct: 61  AMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDSIDTA 120

Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446
                 +     G+G      R +   +        G +P+ +  + +  A N    R G
Sbjct: 121 EHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQTRGG 178

Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
           +       +  ++ + + +++    D  +   M+ +    +L +KR  +N   TL S   
Sbjct: 179 SATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLMSYFY 238

Query: 507 VSDLHDLYG----KEFEIAYENYERQADR--------GEIKVFRKISAVALWRKMLTMLF 554
             ++H+ +      +FE  Y   E++             I    +ISA  +    L +  
Sbjct: 239 APEVHEAFYGEDEAKFEEIYVAAEKRVASLTKIDHEGKTIPAAPRISAKEILDTWLRIRM 298

Query: 555 ETGHPWITFKDPCNIR--------------------SPQQHVGVVHSSNLCTEITLNSSS 594
           ETG  +       N                       P  HV  ++ +    +       
Sbjct: 299 ETGRMYAHHIGESNRHGNFLDPIRMTNPFVLNYSATRPFHHVTELYKTQDQLDDMRPEDI 358

Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            E ++CNLG + L    +       +   T    ++ +D +I+I  +     
Sbjct: 359 GEVSLCNLGGVVLGRMES-----LAEWEKTCYILLKFVDTIIEIQDYPFPTM 405


>gi|319442629|ref|ZP_07991785.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 395

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 149/339 (43%), Gaps = 14/339 (4%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     ++     + + +   D  +  L      ++     +LG    Y  Y L   +G 
Sbjct: 66  EKVGYLVDNEYYDKAVLDKYDDEFVKDLFKQAYAKKFRFQTFLGAFKYYTSYTLKTFDGR 125

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M            A    + +    F  +TPT  N G     +  S
Sbjct: 126 RYLERYED---RVCMVALGLADGDAALASHLVDEIIDGRFQPATPTFLNIGKAQRGEPVS 182

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+
Sbjct: 183 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREVGAPIKHIENQSSGVIPVMKL 242

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 243 LEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 302

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548
           +   +N    LFSP    D+  +YGK F      E+YE   +   I+  + I+A   ++ 
Sbjct: 303 ELAKRNDDMYLFSP---YDVERIYGKPFADVSVTEHYEEMVEDPRIRKSK-INARQFFQT 358

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+E
Sbjct: 359 LAEIQFESGYPYIMFEDTVNRANPI--EGRITHSNLCSE 395


>gi|319440695|ref|ZP_07989851.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium
           variabile DSM 44702]
          Length = 387

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 149/339 (43%), Gaps = 14/339 (4%)

Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312
           E     ++     + + +   D  +  L      ++     +LG    Y  Y L   +G 
Sbjct: 58  EKVGYLVDNEYYDKAVLDKYDDEFVKDLFKQAYAKKFRFQTFLGAFKYYTSYTLKTFDGR 117

Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370
           R  E  +    RV M            A    + +    F  +TPT  N G     +  S
Sbjct: 118 RYLERYED---RVCMVALGLADGDAALASHLVDEIIDGRFQPATPTFLNIGKAQRGEPVS 174

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           CFL  + D++  I  ++     L+K  GG+    + +R +GA I     +S GVIP +K+
Sbjct: 175 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREVGAPIKHIENQSSGVIPVMKL 234

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  
Sbjct: 235 LEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 294

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548
           +   +N    LFSP    D+  +YGK F      E+YE   +   I+  + I+A   ++ 
Sbjct: 295 ELAKRNDDMYLFSP---YDVERIYGKPFADVSVTEHYEEMVEDPRIRKSK-INARQFFQT 350

Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +  + FE+G+P+I F+D  N  +P    G +  SNLC+E
Sbjct: 351 LAEIQFESGYPYIMFEDTVNRANPI--EGRITHSNLCSE 387


>gi|254443062|ref|ZP_05056538.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verrucomicrobiae bacterium DG1235]
 gi|198257370|gb|EDY81678.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Verrucomicrobiae bacterium DG1235]
          Length = 1164

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 109/555 (19%), Positives = 189/555 (34%), Gaps = 93/555 (16%)

Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
             HPQ S+CFL  + D +  I         +     G+G + + +R     I G  G + 
Sbjct: 210 YTHPQASACFLMGIEDSMEKILSHQIAEGGVFSSGSGIGVNLSSIRSSKEPIAG-KGFAS 268

Query: 423 GVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDD---RRRTHD 478
           G I F K  +  A A+  GGK R+ A    L   H D+ +F+  +    D      R H+
Sbjct: 269 GPISFDKGFDRMAGAIKSGGKTRRAARMVLLFADHPDIFQFISTKNEQEDIGKIVLREHN 328

Query: 479 MNTAN--------------------------WIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512
           ++ A                            + D           +      + ++   
Sbjct: 329 VSVALKKKAEVFAVKGSPAERMAARIVLDMPMVTDRQYDSGMDELLYGETLGHQNANHSV 388

Query: 513 LYGKEFEIAYENYERQADRG---EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
               +F  AY+     A R      KV     A  +   +   ++    P     D  NI
Sbjct: 389 SLKGDFWKAYQTKGEYATRWVSDPTKVEDTFKAEEILDAIAECVWHNAEPGTHNNDFINI 448

Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRT 627
            +P +  G + +SN C+E    +       CNL S N+   +  +  +   +KL   IR 
Sbjct: 449 WNPVKSDGDISTSNPCSEYLHLNF----TSCNLSSFNVFRFYDRDEKKMKVEKLQKAIRL 504

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           A+   D  I+     I +     + +R  G+G       L  + IPY S E   IA + +
Sbjct: 505 AMIAADLNIEEGGFPISEIAAGTYRYRTTGIGYANVGGLLMAMGIPYDSDEGRLIASQLV 564

Query: 688 EFISFHAISASVELAQERGAYSSFKGS--------------------------------- 714
             ++     AS E+ QE GAY  F+ +                                 
Sbjct: 565 SLLTSTCWKASSEMGQELGAYPRFESTEADLREVLELHKAVQDLSGAFAEGKDVEKEAEV 624

Query: 715 ---------LWDQGVFPIDSIGLLAEVRDELAMN--RTSRLPWD----ELKKRVKTIGMR 759
                       QG+  +D +   A+  ++ +++    ++   D       + +     R
Sbjct: 625 IFKKRGSRLPMSQGLTALDVLKGYAKSFEKHSVDAPEIAKQLQDVNAATWTEVLAAKRFR 684

Query: 760 NSNCMAIAPTATIANICGV----SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRD 814
           NS    +APT TI+   GV    + S +P Y  + Y   +  G   + N+  +  L+ + 
Sbjct: 685 NSFTTVMAPTGTISAPMGVYDEGTTSAEPDYTLVKYKNLSGGGMLKMFNTLALEGLRTQG 744

Query: 815 LWDEAMISDLKYHDG 829
                +        G
Sbjct: 745 YTTHQVREAALEVAG 759



 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE-----------IDPMW 855
           + EL+++     A   +     G+  ++E IP  LK  H  AF+           I    
Sbjct: 812 LEELREKGQTGGANDEESIVLAGA-SHVEDIP-WLKSEHLGAFDCSATSGTGVRSIQAKG 869

Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
            +      Q ++  A S  + L    + + +         MG+K     R+ S   +   
Sbjct: 870 HMRMLGAIQPFLSGATSKTVNLPYTATREDIKQCLVDCHEMGVKCVALYRADSK-GISVF 928

Query: 915 TLKGVDGK 922
            +   +G+
Sbjct: 929 NVDTPEGR 936


>gi|325066267|ref|ZP_08124940.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces
           oris K20]
          Length = 393

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           + +S  +L+   + +   L + E     +     AR    +   +     +   +K  + 
Sbjct: 11  ETVSSPELDYHALNAKLNLYDAEGRIQFDADHEAARQYFLQHVNQNTVFFHDLEEKLEY- 69

Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                        +EEG     + +      +          +     +LG    Y  Y 
Sbjct: 70  ------------LVEEGYYEGHILDKYSPEFVKSAFKAAYAHKFRFETFLGAFKYYTSYT 117

Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           L   +G R  E  +     VA+ LA      E+ A++  + + S  F  +TPT  N G  
Sbjct: 118 LKTFDGKRYLERFEDRVTMVALTLA---NGVERLALDLVDEMMSGRFQPATPTFLNEGKA 174

Query: 365 HP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423
              +  SCFL  + D++  I   +     L+K  GG+    + +R +GA I     +S G
Sbjct: 175 QRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSG 234

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           VIP +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++   
Sbjct: 235 VIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGV 294

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKIS 541
            IPD+  +    N    LFSP    D+  +YG  F      E Y    D G IK  +KI+
Sbjct: 295 VIPDITFELARNNEDMYLFSP---YDVERVYGMPFADINVTEKYREMVDDGRIKK-KKIN 350

Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
           A   ++ +  + FE+G+P++ F+D  N  +P
Sbjct: 351 ARTFFQTLAEIQFESGYPYVMFEDTVNKANP 381


>gi|226331037|ref|ZP_03806555.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198]
 gi|225201832|gb|EEG84186.1| hypothetical protein PROPEN_04967 [Proteus penneri ATCC 35198]
          Length = 326

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 89/318 (27%), Positives = 141/318 (44%), Gaps = 16/318 (5%)

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           +  I  ++     L+K  GG+    T +R  GA I     +S GV+P +K+  D     N
Sbjct: 1   MESIGRSVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYAN 60

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499
           Q G R+GA   YL   H D+  FLD ++   D++ R   ++    IPD+  +   +N   
Sbjct: 61  QLGARQGAGAVYLHAHHPDIYHFLDTKRENADEKVRIKTLSLGVVIPDITFELAKRNEDM 120

Query: 500 TLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557
            LFSP +V  ++ +          Y      A   +    +KI A   ++ +  + FE+G
Sbjct: 121 YLFSPYDVERVYGVPMSEISISEKYSEMVNNAQIRK----KKIKAREFFQTLAEIQFESG 176

Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAH 610
           +P+I F+D  N  +P    G ++ SNLC+EI   +S+ E              S NL + 
Sbjct: 177 YPYIMFEDAVNRANPI--AGRINMSNLCSEILQVNSASEYHPDLSYRHIGHDISCNLGSM 234

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                 D    A T+ TA+R L NV ++    ++   +K N    AIGLG M     L  
Sbjct: 235 NIAMAMDSPNFAHTVSTAIRALSNVSEMTKIESVPSIEKGNLASHAIGLGQMNLHGYLAR 294

Query: 670 LHIPYASPEAVEIADESM 687
             I Y S EA++  +   
Sbjct: 295 ERIYYGSEEALDFTNIYF 312


>gi|297802304|ref|XP_002869036.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297314872|gb|EFH45295.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 291

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 143/381 (37%), Gaps = 92/381 (24%)

Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479
              G++P L+V N TA  V+QGG ++  +       H+ +  F         +  R  D+
Sbjct: 2   TCNGIVPVLRVFNATASYVDQGGGKRKGI-------HLTINPFF----FPFQEEHRARDL 50

Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539
               WIP LFM+RV  +  W+LF  +E   L D  G EFE  Y  YE        K  + 
Sbjct: 51  FYGLWIPYLFMERVQTDGQWSLFCSNEAPGLADCCGAEFEKLYTQYENV-----GKAKKV 105

Query: 540 ISAVA-LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
           + A   LW ++LT   +TG P++ F      ++  +    + SSNLCTEI   +S     
Sbjct: 106 VQAQQQLWYEILTSQVKTGTPYMLF--KVRNKAINKICIPLMSSNLCTEIVEYTSP---- 159

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
                                       TAV  L +++       E              
Sbjct: 160 --------------------------AETAVCNLASIVLPRFCKGE-------------- 179

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
                            +          +    +HA+ +S E+A + GAY +++GS    
Sbjct: 180 ----------SRGQYLTTW------FILLTKTYYHALKSSSEIATKEGAYETYQGSP--- 220

Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778
           GV    +  ++   R            W  L   +    +RNS  +A+ PTA+ + I G 
Sbjct: 221 GVVQPATWSVIPSDR----------WDWAALMDMISKNVIRNSLLVALMPTASTSQILGN 270

Query: 779 SQSIDPSYQNLYVKSNMSGDF 799
           ++  +P   N++ +  +   F
Sbjct: 271 NECFEPYTSNVFSRRVLCNKF 291


>gi|9629970|ref|NP_046188.1| ribonucleotide reductase large subunit [Orgyia pseudotsugata MNPV]
 gi|1911278|gb|AAC59031.1| ribonucleotide reductase large subunit [Orgyia pseudotsugata MNPV]
          Length = 593

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 114/611 (18%), Positives = 205/611 (33%), Gaps = 82/611 (13%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P  F  R+A  +A     K       +  L     +  +  +          S+C LT
Sbjct: 24  ETPSGFCTRMANKMAGDHPTKT----RLFKSLLESVALIPSSAVCADKAD---PSACHLT 76

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            +           + N  +A    G G                       +   +  +  
Sbjct: 77  VLSRSYAAATKLDELNRAVAMCVNGTGVGVGADNLRYQGSAIAGELKNNFVEICQYIDGG 136

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF--MKR 492
                   K +     +L   +I+    L LR+      R T ++     IPDLF  M++
Sbjct: 137 NNLNVAERKSR--TALFLSLHNINALICLTLRQQNA---RVTPNIFYGLMIPDLFIKMQQ 191

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
             +NA W LF      D   L     E     Y R          +K++A  +  +++  
Sbjct: 192 RDENATWYLFDGHTTLDGASLNECYGEEYENLYWRMVKA--KLYLKKMNARRVLGEVIMC 249

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612
           + E G P++ ++D  N  + Q+ +G V + NLCTEI  ++ S  +++C L ++N  A+  
Sbjct: 250 ITENGFPYVVWRDRVNEYNNQKQLGAVQTLNLCTEICQHADSSASSMCTLLTVNAAAYCE 309

Query: 613 NNQFDYDKLASTIRTAVR-VLDNVIDINCHTIEKAKKSNHTH--------------RAIG 657
           N   +          A   +LD +     + +     +                  R IG
Sbjct: 310 NYDREAVLREIKNDLATHGMLDCMPAFGDNELFAHCFAAAYMATFALNTLLGDTARREIG 369

Query: 658 LGLMGFQS-ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715
           +   G       +     A       A    E++      +S+  ++  G    +F  S 
Sbjct: 370 VTPTGVFDAVYIMCGKDEAYAAMPRYAALVAEYMYMGCALSSIVYSRAYGVICCNFAKSE 429

Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775
           + +G+   D   +               L WD ++  +   GM NS   A APTAT + +
Sbjct: 430 FSRGLLQFDLRNVTPA------------LQWDSVRHHMMK-GMANSMLTAQAPTATTSLL 476

Query: 776 CGVSQSI-DPSY-QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
             V++S+  P        K++  G F     FL+                 +    S+  
Sbjct: 477 TNVTESVQYPMAGAAATTKNSGIGRFAETPFFLLR----------------RQDGDSVNR 520

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893
              I   ++    TA                 ++DQ+QS+ +     + + +  + R  +
Sbjct: 521 FVSIKKQVEVYEKTA----------------PFVDQSQSVIVSCK-ATYEDVLRVLRCTF 563

Query: 894 LMGLKT-TYYL 903
              LKT  YYL
Sbjct: 564 DAKLKTAIYYL 574


>gi|47566240|ref|ZP_00237268.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus
           G9241]
 gi|217958928|ref|YP_002337476.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228984527|ref|ZP_04144704.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155018|ref|ZP_04283132.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|229195648|ref|ZP_04322414.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|47556793|gb|EAL15124.1| ribonucleotide-diphosphate reductase alpha chain [Bacillus cereus
           G9241]
 gi|217063500|gb|ACJ77750.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus
           cereus AH187]
 gi|228587897|gb|EEK45949.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           m1293]
 gi|228628576|gb|EEK85289.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           ATCC 4342]
 gi|228775230|gb|EEM23619.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 364

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|229160403|ref|ZP_04288401.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
 gi|228623127|gb|EEK79955.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           R309803]
          Length = 364

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|52143986|ref|YP_082841.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus E33L]
 gi|51977455|gb|AAU19005.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus E33L]
 gi|324325468|gb|ADY20728.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 376

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372

Query: 582 SNLC 585
           SNLC
Sbjct: 373 SNLC 376


>gi|9631115|ref|NP_047785.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822383|gb|AAC70334.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 596

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 116/617 (18%), Positives = 216/617 (35%), Gaps = 91/617 (14%)

Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
           E P  F  R+A  LA     K +        ++        P+           S+C LT
Sbjct: 24  ETPAEFCARMARKLAGGHPTKSELMKSLLESVALV------PSSAVCADGTDSSSACHLT 77

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
                        + N  +A    G G                       +   +  +  
Sbjct: 78  VFGRSYAAAVKLEELNRAVAMCVNGTGVGIGADNLRYQGSAVAGELKNNFVEICQYIDGG 137

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--R 492
                   K +     +L   +I+    L LR+      R T ++     IPDLF++  R
Sbjct: 138 NKLSVAERKSR--TALFLSLHNINSLICLTLRQQNA---RVTPNVFYGLMIPDLFIEAQR 192

Query: 493 VTQNAGWTLFSPDEVSDL---HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
              +A W  F      D    ++ YG+E+E  Y               +K++A  +  ++
Sbjct: 193 RDADASWYFFDGHATLDGASLNECYGREYEDLYARMVEA-----KLYLKKMNARRVLGEI 247

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609
           +  + E G P++ ++D  N  + Q+ +GVV + NLCTEI  ++ S   ++C L ++N  A
Sbjct: 248 IMCIAENGFPYVVWRDRVNEYNNQKRLGVVQTLNLCTEICQHADSGADSMCTLLTVNAAA 307

Query: 610 HFANNQFDYDKLASTIR---TAVRVLDNVIDINCHTIEKAKKSNHTH------------- 653
           +  +  +D   +   I     A  +L+ +     + +     +                 
Sbjct: 308 YCED--YDRAAVFREIEADLAAHGMLECMPPFGGNELFAHCFATAYMATFALNVLLGETA 365

Query: 654 -RAIGLGLMGFQS-ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSS 710
            R IG+   G       +     A     E A  + E+I    + +S+  ++  G    +
Sbjct: 366 RREIGVTPTGLFDAVYIMCGREAAYDAMPECAAAAAEYIYMGCVLSSIAYSRAHGVVCRN 425

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           F  S + +G+   D   +   +R            WD ++  +   GM NS   A APTA
Sbjct: 426 FAKSEFSRGLLQFDLRRVAPALR------------WDAIRPHMMR-GMANSMLTAQAPTA 472

Query: 771 TIANICGVSQSI-DPSY-QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828
           T + +  V++S+  P        K++  G F     FL+   +         +S      
Sbjct: 473 TTSLLTNVTESVQYPMAGAAATTKNSGIGRFAETPFFLLRRREAAAAGANKFVSI----- 527

Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887
                     +   +++  TA                 ++DQ+QS+ +     + + +  
Sbjct: 528 ----------EKQVEVYERTA----------------PFVDQSQSVIISCK-ATYEDVFR 560

Query: 888 IYRQAWLMGLKT-TYYL 903
           + R+ +   LKT  YYL
Sbjct: 561 VLRRTFDAKLKTAIYYL 577


>gi|229029123|ref|ZP_04185220.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
 gi|228732181|gb|EEL83066.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH1271]
          Length = 364

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 159/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A  F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKHF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|229172090|ref|ZP_04299655.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
 gi|228611433|gb|EEK68690.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           MM3]
          Length = 364

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 159/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEYDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A  F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKHF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|297562264|ref|YP_003681238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846712|gb|ADH68732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
          Length = 1779

 Score =  144 bits (362), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 771  TIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-- 826
            TI  +    +  I+P +  + + K    G   +VN  +   L      DE + + ++Y  
Sbjct: 1382 TIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQAIPRALGNLGYQDEQIEAVVEYVS 1441

Query: 827  HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882
             +G + +   +  +  ++   A     I PM  +   +  Q ++  A S  + + E  S 
Sbjct: 1442 ENGHVVDAPGLRAEHYEVFDCAMGLRYIRPMGHVRMMAAVQPFLSGAISKTVNVPEEASV 1501

Query: 883  KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            +  + IY + W MGLK     R         ST    + +                 +P 
Sbjct: 1502 EDFEHIYFEGWRMGLKALAVYRDNCKVGQPLSTGGTREKEAGPEAEAVEAPRPVRRRLPK 1561



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 96/266 (36%), Gaps = 11/266 (4%)

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFG 385
           G      + E    E  + L+   F  ++P  FN GT    Q+S+CF+ +V D +  I  
Sbjct: 112 GYFASAEDAEVFDHELKHALAHQLFSFNSPVWFNVGTNSKAQVSACFILSVDDTMESILD 171

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444
             +E  ++ K   G G + + +R     +    G + G + F++ A+ +A  +  G   R
Sbjct: 172 WYKEEGIIFKGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 230

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
           + A    L+  H D+E+F++ +       R   D      +    M  V           
Sbjct: 231 RAAKMVVLDVDHPDIEDFVETKAREEHKIRALRDAGFDVDLGGDDMFSVQYQNANNSVRV 290

Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564
            +        G +F            R   +V   + A  L+++M    +E   P I + 
Sbjct: 291 SDAFMRAVESGSDF--------GLTSRTTGEVVATVDAKELFQRMARAAWECADPGIQYD 342

Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITL 590
                       G + +SN C     
Sbjct: 343 GTIQDWHTTPESGRISASNPCFPADQ 368



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 7/213 (3%)

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKL 621
           F+   N+  P+ H  +V  + +         S + + CNL SINLL     ++ FD ++ 
Sbjct: 741 FETTYNLTEPRNHSYIVGGTVVAN--CSEYMSLDDSSCNLASINLLKFLREDDTFDVERF 798

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681
            +     +  +D  I       EK  ++   +R +G+G     + L      Y S     
Sbjct: 799 TALTELVITAMDVSITFADFPTEKIGETTRAYRQLGIGYANLGALLMATGHAYDSEGGRA 858

Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELA 737
           +A      ++  A   S ELA   G Y  ++ +                ++R     E  
Sbjct: 859 VAAAVTSLMTGTAYRRSAELAGVVGPYDGYRRNERAHKRVMRKHAAANDDLRTVGTLEEP 918

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770
           ++  +   W E  +  +  G RN+    +APT 
Sbjct: 919 IHAAATREWAECLRIGERNGWRNAQASLLAPTG 951


>gi|229057077|ref|ZP_04196469.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
 gi|228720218|gb|EEL71797.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH603]
          Length = 364

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 160/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARKNTVHFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    IP  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIIPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|167916608|ref|ZP_02503699.1| hypothetical protein Bpse112_39427 [Burkholderia pseudomallei 112]
          Length = 377

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 145/395 (36%), Gaps = 50/395 (12%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 23  WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPY- 81

Query: 595 EETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N         FD+    + +R  VR+LDN +D+    +    
Sbjct: 82  ---GSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 138

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 139 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGA 198

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y                    L +    L   R        +   ++  G+R+S+  + A
Sbjct: 199 YP-------------------LCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFA 239

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           P   ++   G   S  I+P+   +  +   +G                 +  E     L 
Sbjct: 240 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAG-----------AAGAPGMRAENHAHRLF 288

Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884
                   +      L    AT  ++ P   +      Q ++D      L L    S ++
Sbjct: 289 RS------LRGERAALPDYFATDADVAPGERLAMRVALQPYVDAGIDNTLTLANHYSLEE 342

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
           ++ +   AW   LK+    R+  A   + S   GV
Sbjct: 343 VNALLFAAWRAKLKSVAIRRADLARDAQPSDDDGV 377


>gi|222095084|ref|YP_002529144.1| ribonucleoside-diphosphate reductase, alpha subunit, n-terminal
           region [Bacillus cereus Q1]
 gi|221239142|gb|ACM11852.1| ribonucleoside-diphosphate reductase, alpha subunit, N-terminal
           region [Bacillus cereus Q1]
          Length = 346

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 150/331 (45%), Gaps = 6/331 (1%)

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIE 315
            Y++E      + +     ++  + N    E      Y+     Y  Y L  N     +E
Sbjct: 19  EYMKEHDYYYNVLDEYNLEEVEEVYNIAYGENFEFQSYMAASKFYKDYALKTNDQKQYLE 78

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLT 374
             +    RVA+           +A +F +++   ++  +TPT  N+  +R  ++ SCFL 
Sbjct: 79  SYED---RVAIVSLYLGRGDVAKAKQFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLL 135

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            + D L  I   +     L+K  GG+  + + +R  G  I G +  + GV+P +K+  D+
Sbjct: 136 EMDDSLNSIGFNINTAMQLSKIGGGVALNLSKLRARGEQIKGIDNAASGVVPVMKLLEDS 195

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494
               NQ G+RKGA   YL  +H D+ EFLD +K   D++ R   ++    +P  F +   
Sbjct: 196 FSYANQLGQRKGAGAVYLNIFHWDIIEFLDTKKINADEKSRIQSLSIGIIVPSKFFELAE 255

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
           +N  + +F+P  V   +  +  + +I     E  ++    K    ISA  +  K+  +  
Sbjct: 256 KNEPFHVFAPYTVYKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQL 315

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           E+G+P++ FK   N + P + +G V  SNLC
Sbjct: 316 ESGYPYLMFKSNANNQHPLKDIGTVKMSNLC 346


>gi|229095935|ref|ZP_04226911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
 gi|229102051|ref|ZP_04232763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|229114889|ref|ZP_04244302.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228668581|gb|EEL24010.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-3]
 gi|228681371|gb|EEL35536.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-28]
 gi|228687445|gb|EEL41347.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-29]
          Length = 364

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|229084442|ref|ZP_04216721.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
 gi|228698870|gb|EEL51576.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock3-44]
          Length = 364

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 159/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y+ E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARANTVHFDSVAERIEYMNEQDYYYNVLDEYKLEEVEEVYNV 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RV++           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVSIVSLYLGRGDVNKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANKQHPLKGIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|896309|gb|AAA69767.1| unknown protein [Mamestra brassicae MNPV]
          Length = 216

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 22/225 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG L   +S +L   +   C  L    V  + V  +  K + D  +  D++   
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
              + TL  K  +Y  +  R L+  + + V  +  K  Q+   H +     E     I+ 
Sbjct: 61  ASVAATLTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQELHKHNLVS--DELLSVTIKH 118

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
                             +  ++  + D  + Y G Q L + Y + IN    E  Q   M
Sbjct: 119 S---------------KIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAETIQHMHM 163

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
           R+A+G+   +      A++ Y  LS   +  ++PT+F +GT  PQ
Sbjct: 164 RIALGIFGDD---IDSAIKSYKFLSRKMYTHASPTMFAAGTLTPQ 205


>gi|306825286|ref|ZP_07458628.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432722|gb|EFM35696.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 288

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 119/303 (39%), Gaps = 58/303 (19%)

Query: 628 AVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686
            VR L  V D  +   +      N      GLG MG  S L    I Y SPE++E     
Sbjct: 1   MVRALTFVTDSSHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIY 60

Query: 687 MEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELA 737
              +++  +  S  +A+ERG  + +F+ S +  G +    +          + E+  ++ 
Sbjct: 61  FMLMNYWTLVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVF 120

Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMS 796
           +   +   W EL+++V+  G+ + N +A+AP  +I+ I  VS SI P  Q +  +     
Sbjct: 121 IPSAA--DWAELREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKI 178

Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856
           G                                       +  +    + +A+++D   +
Sbjct: 179 GKIYYP-------------------------------AAGLSTETIPYYTSAYDMDMRKV 207

Query: 857 IESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYY 902
           I+  +   + +DQ  SL L++              ++ + + L  +   A+  G+K+ YY
Sbjct: 208 IDVYAAATEHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYY 267

Query: 903 LRS 905
           +R+
Sbjct: 268 VRT 270


>gi|170696403|ref|ZP_02887531.1| putative ribonucleotide reductase [Burkholderia graminis C4D1M]
 gi|170138664|gb|EDT06864.1| putative ribonucleotide reductase [Burkholderia graminis C4D1M]
          Length = 430

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 20/173 (11%)

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVK 792
            L     +    +++K+ ++  G+RNS+ ++ APT T++       S  I+P++   Y +
Sbjct: 18  YLKAGTFASRLPEDIKEAIRRDGIRNSHLLSNAPTGTVSLAFADNASNGIEPAFSWTYTR 77

Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852
                        ++ +  +     E     L    G  G++ R+PD       +A E+ 
Sbjct: 78  MK-----------VMADGGRESFDVEDYAYRLYRELG--GDVTRLPD----YFVSALEMS 120

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904
               ++  +  Q ++D + S  + +  +   +  + +Y  AW  GLK     R
Sbjct: 121 ARDHLDMMAAVQPYVDTSISKTVNVPADYPFEAFESLYFDAWKSGLKGLATYR 173


>gi|118431711|ref|NP_148354.2| ribonucleotide reductase, B12-dependent [Aeropyrum pernix K1]
 gi|116063033|dbj|BAA81072.2| ribonucleotide reductase, B12-dependent [Aeropyrum pernix K1]
          Length = 979

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 27/193 (13%)

Query: 743 RLPWDELKKRVKTIGM---RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799
              W  L++  + +G    RN+    IAPT TI+ + G S  I+P +  +Y +    G F
Sbjct: 712 MEAWRLLREYGRRLGAKAPRNTVTTTIAPTGTISILAGTSSGIEPYFALVYKRQVAVGTF 771

Query: 800 TVVNSFLVNEL----KQRDLWDEAMI---SDLKYHDGSIG--------NIERIPDD---- 840
             V S    +L    ++  +  + +     +++ H GS+          ++   DD    
Sbjct: 772 LEVVSRFREDLLKAAEKHGVGRDVLEIVYEEVRRHKGSLRWSLNVLAEKLDGRVDDGFLE 831

Query: 841 ----LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895
               L + +AT+ +    + +      Q ++DQA S  + L    +   ++  Y  AWL 
Sbjct: 832 ELARLARKYATSMDFPLWYHLAHQIAAQLYVDQAISKTVNLPRTATPDDVEASYLAAWLG 891

Query: 896 GLKTTYYLRSRSA 908
           GLK     R  S 
Sbjct: 892 GLKGFTVYRDESK 904



 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 116/559 (20%), Positives = 190/559 (33%), Gaps = 128/559 (22%)

Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
           DF F Y  +++L  RY +    G  +E P     RVA+G   +           Y LL  
Sbjct: 67  DFGFTYNAVRVLMARYMVKDEMGRFLETPSMVMRRVALGFRERVDPD-----RLYRLLVE 121

Query: 349 FHFMCSTP--TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG----- 401
             FM ++P             LS+C++T V DD+  I  A    A   K+ GG G     
Sbjct: 122 RRFMFNSPTLFNMFVDGARGTLSACYVTPVYDDMDSIMDAATVQAKTFKWGGGQGFSFSE 181

Query: 402 ------------------NDWTPVRGLGAHIHGTNGK----SQGVIPFLK---------- 429
                               +  +      +    GK    + G++              
Sbjct: 182 LRPRWDVVRGTSGYSSGPMSFMRLYDTVTELVKQGGKRRGANMGIMHVWHPDIYTPGFDP 241

Query: 430 --------------VANDTAVAVNQ----GGKRKGAVCAYLE------TWHIDVEEFLDL 465
                         + +  +  + +    G +  G +   +E       W I+   F+  
Sbjct: 242 AVALRNSLPPQVQELIDAFSRIIRELGDEGYEVPGELVELVESLSRQGWWTIEDAGFIQA 301

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL--------------- 510
           +K    D     + N +    D FM+ V +   W + +P   +                 
Sbjct: 302 KKPPLQDAN-LTNFNISVGANDAFMQAVVEGGDWWMVNPRYTASDRAGIYKIHYSISKAT 360

Query: 511 ----------------HDLYGKEFE--------IAYENYERQADRGEIKVFRKIS----- 541
                            + Y   FE         A E  E QA +  +    +       
Sbjct: 361 GLGRLGTLIEKHPWLLENPYINLFEDVISEALPKALEMLEEQARKTGMPADPRQKNVHAW 420

Query: 542 ---AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598
              A  +WR+++   +  G P + + D  N  SP   +G V+++N C+E TL        
Sbjct: 421 VAPAREIWREIVEAAWGGGDPGLVYFDNHNKWSPTPWLGAVNATNPCSEQTLYPF----E 476

Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658
            CNLGS+++  + A  +FD ++ A+ +      +D VID+N H  E+   +N   R IGL
Sbjct: 477 PCNLGSLSVDKYVAGGRFDLERFANDVEFLTEAMDAVIDLNRHPDERQDTANKFTRKIGL 536

Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718
           G+MG   AL  L  PY S EAV      M  +   +   S E+    G   +F+      
Sbjct: 537 GIMGLADALAGLGYPYDSEEAVAFTTILMAGLEVFSWKRSWEMGARLGHAPAFE------ 590

Query: 719 GVFPIDSIGLLAEVRDELA 737
                D   L    +    
Sbjct: 591 -CRMFDWRSLECREKGSPE 608


>gi|229016700|ref|ZP_04173633.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273]
 gi|229022912|ref|ZP_04179432.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272]
 gi|228738447|gb|EEL88923.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1272]
 gi|228744608|gb|EEL94677.1| Ribunucleotide reductase large subunit [Bacillus cereus AH1273]
          Length = 364

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 159/364 (43%), Gaps = 7/364 (1%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A  F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKANHF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
           FLD +K   D++ R   ++    +P  F +   +N  + +F+P  V   +  +  + +I 
Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVFKEYGKHLDDIDID 300

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
               E  ++    K    ISA  +  K+  +  E+G+P++ FK   N + P + +G V  
Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360

Query: 582 SNLC 585
           SNLC
Sbjct: 361 SNLC 364


>gi|110668757|ref|YP_658568.1| ribonucleoside-diphosphate reductase alpha subunit
            (intein-containing) [Haloquadratum walsbyi DSM 16790]
 gi|109626504|emb|CAJ52966.1| ribonucleoside-diphosphate reductase alpha subunit
            (intein-containing) [Haloquadratum walsbyi DSM 16790]
          Length = 1909

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 168/490 (34%), Gaps = 96/490 (19%)

Query: 372  FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431
            +  TV D+       + +  +     GG+G  +  +R  G  +  T G + G I F++  
Sbjct: 590  YDITVADN----HEYVTDGIISHNSGGGMGYAFWKLRPYGDSVGSTGGIASGPITFMRTY 645

Query: 432  NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL---------------------------- 463
            +     + QGG R+GA    +   H DV +F+                            
Sbjct: 646  DQMCETIAQGGARRGAQMGVMRISHPDVIQFIHAKNKDVSLAHSLRLNDPDDFTHTSFAD 705

Query: 464  --DLRKNTGDDRRRTH------------DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509
              +  +   D+  R              + N +  + D FM+ +  +  +T  +P    D
Sbjct: 706  ALEEARELIDEEGRVPEHLRNAVEGHLSNFNISVGVTDEFMEALFADEEFTFTNPRT-ED 764

Query: 510  LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569
             H    +  +  YE +    +  E+     + A  LW  +++   E G P + + +  N 
Sbjct: 765  PHIATPET-KELYELH-DLGEHVEVGEELSVPAEELWDHIVSGAHENGEPGVIYLERVNK 822

Query: 570  RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY----------- 618
                          L T        EE   CNLG INL      +  D+           
Sbjct: 823  EHSFDVEKHSEHEILATNPCGEQPLEEYEACNLGHINLSTLADKDAPDWRVWYDNNGDAY 882

Query: 619  -----------------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661
                             +     I +  R L+NV+ ++   +++ + +    R IGLG+M
Sbjct: 883  NNLDDAAEAFIYEAIDMNAFNRRIESGTRFLENVVTMSDFPVDEIEATVRDMRKIGLGIM 942

Query: 662  GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721
            G       + + Y S EA  IA++ M  I+  +  AS ELA+ERG ++ +  S +     
Sbjct: 943  GLAQLYIQIGVRYGSQEANAIAEQLMTHINHESKWASHELAKERGTFNDWTESKYANPT- 1001

Query: 722  PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA---TIANICGV 778
                     E R+    +        E    ++     N N   IAPT      + +   
Sbjct: 1002 ---------EYREWFEHHTGLDASEWEDGFLIR-----NHNTTTIAPTGCVEENSLVS-T 1046

Query: 779  SQSIDPSYQN 788
             + + P    
Sbjct: 1047 DEGLRPIKDL 1056



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 13/180 (7%)

Query: 771  TIANICGVSQSIDPSYQNLYVKSN-----MSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
            T + I   +   +P Y   Y K+              + + +  L+Q D+  EA+  + +
Sbjct: 1475 TTSMIGNTTGGCEPIYNVAYYKNVSDDVQGDEMLVEFDDYFLRVLEQNDIDVEAVKQEAQ 1534

Query: 826  Y------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878
                    DG +  ++ +P  + ++     ++            Q+ ID A S       
Sbjct: 1535 EQMANNDFDG-VDGLDTVPKAIGELFVVTSDLSGKDHAGVQCACQEGIDSAISKTCNFPS 1593

Query: 879  EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938
              + + +D +YR  +  G K     R  + +    +T        +     +        
Sbjct: 1594 SATKEDMDEVYRYIYQNGGKGVTVYRDGTRSKQVLTTRAQNTEFADESEAAETLVEQIED 1653


>gi|158319503|ref|YP_001512010.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus oremlandii OhILAs]
 gi|158139702|gb|ABW18014.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus oremlandii OhILAs]
          Length = 784

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 211/659 (32%), Gaps = 103/659 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KRNG +  F+PSKI+ AI KA    +           ++   +TE+   ++     
Sbjct: 2   IQVMKRNGRLVEFNPSKITNAIKKAMAETKLGV------DHNLSVKITEEIKEKIQN--- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +A  +H+E+IQD VE  LM S    + + Y++YR ER+ +RA Q  S         +   
Sbjct: 53  NAKPIHVEEIQDIVEMLLMSSDRKDVAKRYIIYRNERAKIRANQKSSDEKLLTDEFISQY 112

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                +   N     +        LQ+   +    ET +         +   +L+ + R 
Sbjct: 113 KH--QIPPLNQLGNFVYYRTYSRWLQEEGRREYWWETVRR------AVEYNCSLVPTRRE 164

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             EK           L + +   +   +  +        +   YP          +    
Sbjct: 165 EAEK-----------LFDNVY-NLRQFLSGRTFWVGGTSVAKNYPMSNYNCSFVVID--- 209

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
                                         +   D ++L + GS           V   +
Sbjct: 210 ----------------------------SFEAFRDLFYLLMIGS----------GVGARV 231

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
             ++ +   +    Y ++   +   S     ++ +     ++    TV D   G   +L 
Sbjct: 232 LKEDVQNLPKIRTDYEIIHKDYVNISIKDREDNTSLVFSHNNSVKITVGDSKEGWIQSLD 291

Query: 389 ENAMLAKYS-----GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443
               L   +       +  D+  VR  GA +    G + G      +       +    K
Sbjct: 292 FFFKLLYSNEYRNIKTIIVDYDHVRPKGAKLKSFGGTASGHESLKNMFYKIDKVIKNSRK 351

Query: 444 RKGAVCAYLETWHI-DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
             G+    L      D+   +      G  RR               M  +  +    + 
Sbjct: 352 VNGSGKIKLRPIDCLDIANIIGENVVVGGVRRTAE------------MILIDADDKECVE 399

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
           +     +L+     ++ +      RQ     I    K S   L  ++  M + +G P   
Sbjct: 400 AKS---NLYKQIDGQWIVDQNIIHRQMSNNSIYYTEKPSREKLHWQIQQMRY-SGEPGWI 455

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-DYDKL 621
             +    R P  +       N C EI L    +   +CNL +IN++A    +   D + +
Sbjct: 456 NAEAAAKRRPNMNG-----VNPCGEILL----DSQGLCNLTTINVMAFVKEDGTLDLEGI 506

Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
               + +VR     +      +    K     + +G  L G+Q  ++   +   + + +
Sbjct: 507 IEAQKLSVRAG-YRMTCVELELPHWDKVQQRDKLVGCSLTGWQDLVNATTMDIEAQKKL 564


>gi|488079|gb|AAA56995.1| ribonucleoside-diphosphate reductase large subunit [Drosophila
           melanogaster]
          Length = 180

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 5/182 (2%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362
             Y L  NG   E PQ   MRVA+G+     E    AVE YNLLS  +F  ++PTLF + 
Sbjct: 1   RSYLLKRNGKIAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAA 57

Query: 363 TRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           T  PQLSSCFL T+  D + GIF ++++ AM++K +GG+G +   +R  G  I GTNG S
Sbjct: 58  TNRPQLSSCFLLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTS 117

Query: 422 QGVIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
            G++P L+V N+ A  V+Q GGKR GA   YLE WH DV EFL+L+KNTG +  R  D+ 
Sbjct: 118 NGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLF 177

Query: 481 TA 482
            A
Sbjct: 178 YA 179


>gi|190886995|gb|ACE95558.1| ribonucleotide reductase [Muromegalovirus C4A]
          Length = 1173

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 99/618 (16%), Positives = 205/618 (33%), Gaps = 71/618 (11%)

Query: 312  SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGTRHPQ 367
             R E P + F RVA  LA++       + +  +      +       +     +    P+
Sbjct: 530  GREETPISVFARVAAALAVECEVDGGASYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 589

Query: 368  LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGVIP 426
            + +       + ++       +         G  +D   +   G  +  +       ++ 
Sbjct: 590  VLAYAGFGGSNPIFDAVSYRAQFYSAESTINGTLHDICDMVTNGLSVSVSAADLGGDIVA 649

Query: 427  FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
             L +      A+    + K  +  Y + W +D  +      + G +      +  A   P
Sbjct: 650  SLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDAGREYEG--LITFAVNTP 707

Query: 487  DLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             +F  R      +  W +F+  E + L  L  K F   YE  ER     + +    +S  
Sbjct: 708  RIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMER-----DGRSAITVSPW 762

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
                ++   +   G+  + F        P+ ++G            ++         +  
Sbjct: 763  WAVCQLDACVAR-GNTAVVFPHNVKSMIPE-NIGRPAVCGPGV-SVVSGGFVGCTPIHEL 819

Query: 604  SINLLAHFAN---------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK-AK 647
             INL                      +F +  L S +R AV + + +ID+   T    A 
Sbjct: 820  CINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAG 879

Query: 648  KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-G 706
            K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A+ ASV+L      
Sbjct: 880  KLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTAVRASVDLCMAGAD 939

Query: 707  AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
             +  F  SL+  G F  D      + R      R ++   ++L++ V   G+RN++ +  
Sbjct: 940  PFPKFPKSLYAAGRFYPDLFD--DDERGP---RRMTKEFLEKLREDVVKHGIRNASFITG 994

Query: 767  APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL---------------VNELK 811
                  AN+ G +    P   N++++          +  L                 +L 
Sbjct: 995  CSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSVKIEPHRLHEEDLS 1054

Query: 812  QRDLWDEA-------MISDLKYHDGSIG---------NIERIPDDLKKIHATAFEIDPMW 855
                            +  +     ++            +   +D      T + +    
Sbjct: 1055 CLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEVACSETGWTVSTDA 1114

Query: 856  LIESASRRQKWIDQAQSL 873
            +I+    RQ ++D AQSL
Sbjct: 1115 VIKMCVDRQPFVDHAQSL 1132


>gi|157676150|emb|CAP08092.1| M45 protein [Murine cytomegalovirus (strain K181)]
          Length = 1174

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 100/618 (16%), Positives = 205/618 (33%), Gaps = 71/618 (11%)

Query: 312  SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGTRHPQ 367
             R E P + F RVA  LA++       + +  +      +       +     +    P+
Sbjct: 531  GREETPISVFARVAAALAVECEVDGGVSYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 590

Query: 368  LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGVIP 426
            + +       + ++       +         G  +D   +   G  +  +       ++ 
Sbjct: 591  VLAYAGFGGSNPIFDAVSYRAQFYSAESTINGTLHDICDMVTNGLSVSVSAADLGGDIVA 650

Query: 427  FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
             L +      A+    + K  +  Y + W +D  +      + G +      M  A   P
Sbjct: 651  SLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGREYEG--LMAFAVNTP 708

Query: 487  DLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             +F  R      +  W +F+  E + L  L  K F   YE  ER     + +    +S  
Sbjct: 709  RIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMER-----DGRSAITVSPW 763

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
                ++   +   G+  + F        P+ ++G            ++         +  
Sbjct: 764  WAVCQLDACVAR-GNTAVVFPHNVKSMIPE-NIGRPAVCGPGV-SVVSGGFVGCTPIHEL 820

Query: 604  SINLLAHFAN---------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK-AK 647
             INL                      +F +  L S +R AV + + +ID+   T    A 
Sbjct: 821  CINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAG 880

Query: 648  KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-G 706
            K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A+ ASV+L      
Sbjct: 881  KLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTAVRASVDLCMAGAD 940

Query: 707  AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
             +  F  SL+  G F  D      + R      R ++   ++L++ V   G+RN++ +  
Sbjct: 941  PFPKFPKSLYAAGRFYPDLFD--DDERGP---RRMTKEFLEKLREDVVKHGIRNASFITG 995

Query: 767  APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL---------------VNELK 811
                  AN+ G +    P   N++++          +  L                 +L 
Sbjct: 996  CSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSVKIEPHRLHEEDLS 1055

Query: 812  QRDLWDEA-------MISDLKYHDGSIG---------NIERIPDDLKKIHATAFEIDPMW 855
                            +  +     ++            +   +D      T + +    
Sbjct: 1056 CLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEVACSETGWTVSTDA 1115

Query: 856  LIESASRRQKWIDQAQSL 873
            +I+    RQ ++D AQSL
Sbjct: 1116 VIKMCVDRQPFVDHAQSL 1133


>gi|115343624|gb|ABI94733.1| pM45 [Murid herpesvirus 1]
 gi|289547264|gb|ADD10427.1| hypothetical protein [Murid herpesvirus 1]
          Length = 1174

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 100/618 (16%), Positives = 205/618 (33%), Gaps = 71/618 (11%)

Query: 312  SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGTRHPQ 367
             R E P + F RVA  LA++       + +  +      +       +     +    P+
Sbjct: 531  GREETPISVFARVAAALAVECEVDGGVSYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 590

Query: 368  LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGVIP 426
            + +       + ++       +         G  +D   +   G  +  +       ++ 
Sbjct: 591  VLAYAGFGGSNPIFDAVSYRAQFYSAESTINGTLHDICDMVTNGLSVSVSAADLGGDIVA 650

Query: 427  FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
             L +      A+    + K  +  Y + W +D  +      + G +      M  A   P
Sbjct: 651  SLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGREYEG--LMAFAVNTP 708

Query: 487  DLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             +F  R      +  W +F+  E + L  L  K F   YE  ER     + +    +S  
Sbjct: 709  RIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMER-----DGRSAITVSPW 763

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
                ++   +   G+  + F        P+ ++G            ++         +  
Sbjct: 764  WAVCQLDACVAR-GNTAVVFPHNVKSMIPE-NIGRPAVCGPGV-SVVSGGFVGCTPIHEL 820

Query: 604  SINLLAHFAN---------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK-AK 647
             INL                      +F +  L S +R AV + + +ID+   T    A 
Sbjct: 821  CINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAG 880

Query: 648  KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-G 706
            K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A+ ASV+L      
Sbjct: 881  KLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTAVRASVDLCMAGAD 940

Query: 707  AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
             +  F  SL+  G F  D      + R      R ++   ++L++ V   G+RN++ +  
Sbjct: 941  PFPKFPKSLYAAGRFYPDLFD--DDERGP---RRMTKEFLEKLREDVVKHGIRNASFITG 995

Query: 767  APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL---------------VNELK 811
                  AN+ G +    P   N++++          +  L                 +L 
Sbjct: 996  CSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSVKIEPHRLHEEDLS 1055

Query: 812  QRDLWDEA-------MISDLKYHDGSIG---------NIERIPDDLKKIHATAFEIDPMW 855
                            +  +     ++            +   +D      T + +    
Sbjct: 1056 CLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEVACSETGWTVSTDA 1115

Query: 856  LIESASRRQKWIDQAQSL 873
            +I+    RQ ++D AQSL
Sbjct: 1116 VIKMCVDRQPFVDHAQSL 1133


>gi|61743911|ref|YP_214057.2| Homolog of the large subunit of ribonucleotide reductase [Murid
           herpesvirus 1]
          Length = 912

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 100/618 (16%), Positives = 205/618 (33%), Gaps = 71/618 (11%)

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGTRHPQ 367
            R E P + F RVA  LA++       + +  +      +       +     +    P+
Sbjct: 269 GREETPISVFARVAAALAVECEVDGGVSYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 328

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGVIP 426
           + +       + ++       +         G  +D   +   G  +  +       ++ 
Sbjct: 329 VLAYAGFGGSNPIFDAVSYRAQFYSAESTINGTLHDICDMVTNGLSVSVSAADLGGDIVA 388

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            L +      A+    + K  +  Y + W +D  +      + G +      M  A   P
Sbjct: 389 SLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGREYEG--LMAFAVNTP 446

Query: 487 DLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
            +F  R      +  W +F+  E + L  L  K F   YE  ER     + +    +S  
Sbjct: 447 RIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMER-----DGRSAITVSPW 501

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
               ++   +   G+  + F        P+ ++G            ++         +  
Sbjct: 502 WAVCQLDACVAR-GNTAVVFPHNVKSMIPE-NIGRPAVCGPGV-SVVSGGFVGCTPIHEL 558

Query: 604 SINLLAHFAN---------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK-AK 647
            INL                      +F +  L S +R AV + + +ID+   T    A 
Sbjct: 559 CINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAG 618

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-G 706
           K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A+ ASV+L      
Sbjct: 619 KLLTLYRDLHIGVVGFHAVMNRLGQKFADMESYDLNQRIAEFIYYTAVRASVDLCMAGAD 678

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
            +  F  SL+  G F  D      + R      R ++   ++L++ V   G+RN++ +  
Sbjct: 679 PFPKFPKSLYAAGRFYPDLFD--DDERGP---RRMTKEFLEKLREDVVKHGIRNASFITG 733

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL---------------VNELK 811
                 AN+ G +    P   N++++          +  L                 +L 
Sbjct: 734 CSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSVKIEPHRLHEEDLS 793

Query: 812 QRDLWDEA-------MISDLKYHDGSIG---------NIERIPDDLKKIHATAFEIDPMW 855
                           +  +     ++            +   +D      T + +    
Sbjct: 794 CLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEVACSETGWTVSTDA 853

Query: 856 LIESASRRQKWIDQAQSL 873
           +I+    RQ ++D AQSL
Sbjct: 854 VIKMCVDRQPFVDHAQSL 871


>gi|190886666|gb|ACE95231.1| ribonucleotide reductase [Muromegalovirus G4]
          Length = 1175

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 99/618 (16%), Positives = 206/618 (33%), Gaps = 71/618 (11%)

Query: 312  SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGTRHPQ 367
             R E P + F RVA  LA++       + +  +      +       +     +    P+
Sbjct: 532  GREETPISVFARVAAALAVECEVDGGASYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 591

Query: 368  LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGVIP 426
            + +       + ++       +         G  +D   +   G  +  +       ++ 
Sbjct: 592  VLAYAGFGGSNPIFDAVSYRAQFYSAESTINGTLHDICDMVTNGLSVSVSAADLGGDIVA 651

Query: 427  FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
             L +      A+    + K  +  Y + W +D  +      + G +      ++ A   P
Sbjct: 652  SLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGREYEG--LISFAVNTP 709

Query: 487  DLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             +F  R      +  W +F+  E + L  L  K F   YE  ER     + +    +S  
Sbjct: 710  RIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMER-----DGRSAITVSPW 764

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
                ++   +   G+  + F        P+ ++G            ++         +  
Sbjct: 765  WAVCQLDACVAR-GNTAVVFPHNVKSMIPE-NIGRPAVCGPGV-SVVSGGFVGCTPIHEL 821

Query: 604  SINLLAHFAN---------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK-AK 647
             INL                      +F +  L S +R AV + + +ID+   T    A 
Sbjct: 822  CINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAG 881

Query: 648  KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-G 706
            K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A+ ASV+L      
Sbjct: 882  KLLTLYRDLHIGVVGFHAVVNRLGQKFADMESYDLNQRIAEFIYYTAVRASVDLCMAGAD 941

Query: 707  AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
             +  F  SL+  G F  D      + R      R ++   ++L++ V   G+RN++ +  
Sbjct: 942  PFPKFPKSLYAAGRFYPDLFD--DDERGP---RRMTKEFLEKLREDVVKHGIRNASFITG 996

Query: 767  APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL---------------VNELK 811
                  AN+ G +    P   N++++          +  L                 +L 
Sbjct: 997  CSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSVKIEPHRLHEEDLS 1056

Query: 812  QRDLWDEA-------MISDLKYHDGSIG---------NIERIPDDLKKIHATAFEIDPMW 855
                            +  +     ++            +   +D      T + +    
Sbjct: 1057 CLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEVACSETGWTVSTDA 1116

Query: 856  LIESASRRQKWIDQAQSL 873
            +I+    RQ ++D AQSL
Sbjct: 1117 VIKMCVDRQPFVDHAQSL 1134


>gi|302348230|ref|YP_003815868.1| predicted ribonucleotide reductase, alpha subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328642|gb|ADL18837.1| predicted ribonucleotide reductase, alpha subunit [Acidilobus
           saccharovorans 345-15]
          Length = 977

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 47/236 (19%)

Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL-------- 810
           R++     APT TI+ I G +  I+P +  +Y++    G+   V     + L        
Sbjct: 715 RHTAVNTTAPTGTISIIAGTTSGIEPYFALVYLRRVTIGELWEVVREFRDRLYSAIAEAG 774

Query: 811 --KQRDLWDEAMISDLKYHDGSIGN-------------------------------IERI 837
              +     E ++  +  H GS+                                 I RI
Sbjct: 775 APAELG---EKLLEAISRHKGSLRWALEDVEKAIRDAQLQEVDGKIVKANWDAEKLISRI 831

Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896
            + L K+ AT+ + D  + I   +  Q + DQA S  + L  + S   +   Y  AWL G
Sbjct: 832 KE-LAKLFATSMDFDVWYHIAHQAAAQLYTDQAISKTVNLPKDASVNAVATAYLTAWLTG 890

Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952
           LK     R  S   V+     G   +LN VPV      +  + +     +  E   
Sbjct: 891 LKGVTVYRDESK-GVQVIYFGGQQRELNRVPVKLLKKPSMRMALIKRSMNAEEALA 945



 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 125/623 (20%), Positives = 199/623 (31%), Gaps = 143/623 (22%)

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           +S    +  LI +S T     P       + LL  +  EV      +             
Sbjct: 1   MSSDAKQLELIRASLTR----PELEDEAKKLLLLDIYSEVRQAYSGRAP-------NGGK 49

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NG 311
                  +    +                        D  F Y  +++L  RY      G
Sbjct: 50  VSELPACVNSICED-----------------------DMKFTYNAIRVLMSRYMTKDLRG 86

Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP--TLFNSGTRHPQLS 369
             IE P     RVA+G + +           Y  +    FM ++P      +      LS
Sbjct: 87  RYIETPSMVMRRVALGFSGRVDPD-----SLYRAMIEGRFMFNSPTLFNMYADGAKGALS 141

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLG-----------------------NDWTP 406
           +C++T V DD+ GI   L    M  KY GG G                         +  
Sbjct: 142 ACYVTPVYDDMRGIMDGLTVQVMTFKYGGGEGFSFSELRPRGDVVAGTSGVASGPLSFMR 201

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE------------- 453
           +  +   +    GK +G      + +      N       A+ + L              
Sbjct: 202 LYDVSTDVVKQGGKRRGA-NMGILHDWHPDLYNPDYDPWKALASTLPPQVSAILEQYRKT 260

Query: 454 --------------------------TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
                                         +   F+  ++    D     + N +    D
Sbjct: 261 LEQLEKDGYYEVDKTALEALTRLTSGWQSPEEAGFIQAKRAPMQDAF-LTNFNISVGTHD 319

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--------------------EIAYEN-YE 526
            FM+ V     W + +P    +   +Y   +                    E  Y N +E
Sbjct: 320 AFMEAVINGQEWWMVNPRYSDEGDGIYRLHYSVSRATGEGRALRVLRESRIETPYMNVFE 379

Query: 527 RQADRGEIKVFRKI------------SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
              +R + ++ + +             A  LW +++   +E G P + F D  N   P  
Sbjct: 380 EVVERAKSRIPKDMDTSRRNPHGWHYPARRLWEEIVRGAWEGGDPGMIFLDNHNKWVPTP 439

Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634
            +G V ++N C E  L         CNLGS++L  +  + +FD D  A  +  AV  LD 
Sbjct: 440 WLGAVAATNPCGEEPLYPY----ESCNLGSLSLDKYIRDGKFDLDSFAKDVDLAVDGLDA 495

Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694
           VID N    ++    N   R +GLG+MG  +AL  L+IPY S EAV     +M  I   A
Sbjct: 496 VIDYNRQPDQRQDLVNKFTRKVGLGIMGLANALAKLNIPYDSEEAVAFTMIAMAMIEAEA 555

Query: 695 ISASVELAQERGAYSSFKGSLWD 717
              S EL    G   +F+   +D
Sbjct: 556 WKRSWELGSRLGHAPAFECRKFD 578


>gi|190886830|gb|ACE95394.1| ribonucleotide reductase [Muromegalovirus WP15B]
          Length = 1180

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 99/618 (16%), Positives = 207/618 (33%), Gaps = 71/618 (11%)

Query: 312  SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGTRHPQ 367
             R E P + F+RVA  LA++       + +  +      +       +     +    P+
Sbjct: 537  GREETPISVFVRVAAALAVECEVDGGASYKILSSKPVDAAQAFDAFLSALCSFAIIPSPR 596

Query: 368  LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK-SQGVIP 426
            + +       + ++       +         G  +D   +   G  +  +       ++ 
Sbjct: 597  VLAYARFGGSNPIFDAVSYRAQFYSAESTINGTLHDICDMVTNGLSVSVSAADLGGDIVA 656

Query: 427  FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
             L +      A+    + K  +  Y + W +D  +      + G +      ++ A   P
Sbjct: 657  SLHILGQQCKALRPYARFKTVLRIYFDIWSVDALKIFSFILDVGREYEG--LISFAVNTP 714

Query: 487  DLFMKRVTQ---NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
             +F  R      +  W +F+  E + L  L  K F   YE  ER     + +    +S  
Sbjct: 715  RIFWDRYLDSSGDKMWLMFARREAAALCGLDLKSFRNVYEKMER-----DGRSAITVSPW 769

Query: 544  ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
                ++   +   G+  + F        P+ ++G            ++         +  
Sbjct: 770  WAVCQLDACVAR-GNTAVVFPHNVKSMIPE-NIGRPAVCGPGV-SVVSGGFVGCTPIHEL 826

Query: 604  SINLLAHFAN---------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEK-AK 647
             INL                      +F +  L S +R AV + + +ID+   T    A 
Sbjct: 827  CINLENCVLEGAAVESSVDVVLGLGCRFSFKALESLVRDAVVLGNLLIDMTVRTNAYGAG 886

Query: 648  KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-G 706
            K    +R + +G++GF + ++ L   +A  E+ ++     EFI + A+ ASV+L      
Sbjct: 887  KLLTLYRDLHIGVVGFHAVVNRLGQKFADMESYDLNQRIAEFIYYTAVRASVDLCMAGAD 946

Query: 707  AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766
             +  F  SL+  G F  D      + R      R ++   ++L++ V   G+RN++ +  
Sbjct: 947  PFPKFPKSLYAAGRFYPDLFD--DDERGP---RRMTKEFLEKLREDVVKHGIRNASFITG 1001

Query: 767  APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL---------------VNELK 811
                  AN+ G +    P   N++++          +  L                 +L 
Sbjct: 1002 CSADEAANLAGTTPGFWPRRDNVFLEQTPLMMTPTKDQMLDECVRSVKIEPHRLHEEDLS 1061

Query: 812  QRDLWDEA-------MISDLKYHDGSIG---------NIERIPDDLKKIHATAFEIDPMW 855
                            +  +     ++            +   +D      T + +    
Sbjct: 1062 CLGENRPVELPVLNSRLRQISKESATVAVRRGRSAPFYDDSDDEDEVACSETGWTVSTDA 1121

Query: 856  LIESASRRQKWIDQAQSL 873
            +I+    RQ ++D AQSL
Sbjct: 1122 VIKMCVDRQPFVDHAQSL 1139


>gi|224539245|ref|ZP_03679784.1| hypothetical protein BACCELL_04147 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519127|gb|EEF88232.1| hypothetical protein BACCELL_04147 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 131

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 32/151 (21%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN+  +AIAPT++ + I G +   DP  +  +++         V       L  +  W 
Sbjct: 1   MRNAYLLAIAPTSSTSIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----SLSDKTFW- 55

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                     ++  A+  D  W I +A  RQ  IDQAQSLNLY+
Sbjct: 56  --------------------------LYKGAYLTDQQWSIRAAGVRQLHIDQAQSLNLYI 89

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
            +E + +++  +Y  AW  G+KT YY+RS+S
Sbjct: 90  TNEFTMRQVLNLYLLAWECGVKTVYYVRSKS 120


>gi|145641094|ref|ZP_01796675.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274255|gb|EDK14120.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 245

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 4/242 (1%)

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322
             + L +     +   +   + + RD  F Y  ++ L  +Y     + G   E  Q  ++
Sbjct: 4   YDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYL 63

Query: 323 RVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380
            V+  L     +  +      FY+  S+F     TP +    T   Q SSC L    D L
Sbjct: 64  LVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDSL 123

Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
             I               G+G +   +R LG+ I G      G IPF K       + +Q
Sbjct: 124 DSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQ 183

Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
           GG R GA   Y   WH++ E  L L+ N G +  R   M+    +  L  +R+ + +   
Sbjct: 184 GGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGSEIN 243

Query: 501 LF 502
             
Sbjct: 244 FI 245


>gi|322807124|emb|CBZ04698.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Clostridium botulinum H04402 065]
          Length = 131

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 32/156 (20%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           MRN    AIAPT + +NI   +  IDP ++  +++    G FT        +L + + W 
Sbjct: 1   MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 55

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                                      +  A  ID  W I++ + RQK IDQAQS NLY+
Sbjct: 56  --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 89

Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912
             E   K++  +Y ++W  G+KT YY+R++S    E
Sbjct: 90  TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 125


>gi|78223118|ref|YP_384865.1| ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
 gi|78194373|gb|ABB32140.1| Ribonucleotide reductase large subunit [Geobacter metallireducens
           GS-15]
          Length = 232

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 9/234 (3%)

Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE----KRAVEFYNL 345
                  L++L  RY L   NG  IE P+  F R+A  +A  E   +    +    F+ L
Sbjct: 1   MELSENALKVLKARYLLKDENGQIIETPEEMFERIARTVANTEKLYDGDTAQWEERFFTL 60

Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405
           LSS  F+ ++  L N+G    QL++CF+  + D +  IF  L+  A++ +  GG G  ++
Sbjct: 61  LSSLRFLPNSSALMNAGKPMGQLAACFVLPLEDSMQSIFDTLKNAALILQSGGGTGFSFS 120

Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465
            +R     +  T G + G + F+K+ N     + QGG R+GA    L   H D+ EF+ +
Sbjct: 121 RLRPRADIVRSTGGIASGPVSFMKIFNTATDIIKQGGARRGANMGILHIDHPDILEFIRV 180

Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           ++N  +      + N +  + D FM+ +     + + +P     +       F 
Sbjct: 181 KRNVQE----LANFNISVAVTDAFMEALHAKGEYQIVNPRSGKIVGTSRPTRFS 230


>gi|290559190|gb|EFD92546.1| ribonucleotide reductase alpha subunit [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 301

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 24/163 (14%)

Query: 775 ICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831
           + GVS  I+P +   Y++ + S     F V++ F+   + +  +  +             
Sbjct: 1   MAGVSGGIEPIFALSYIRRSESLSEEKFEVLDPFVKRYMDKLGIKSKK------------ 48

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890
                   DL  I  TA  IDP + ++  +  QK ID + S  + L        +D IYR
Sbjct: 49  --------DLPDIFVTAHNIDPFFRVKMQAAVQKHIDSSISSTVNLSAGTDADTVDKIYR 100

Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933
            AW +G K+    R  S   + KS  +    K +     +   
Sbjct: 101 YAWKLGCKSITVYREGSKNDILKSLDEEKPEKESIALKEEERP 143


>gi|238577950|ref|XP_002388548.1| hypothetical protein MPER_12417 [Moniliophthora perniciosa FA553]
 gi|215449937|gb|EEB89478.1| hypothetical protein MPER_12417 [Moniliophthora perniciosa FA553]
          Length = 267

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 18/145 (12%)

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           VV  +L+ +L    LWD+ M + +  H+GS+ NI  IPD++K I+ T +EI    +++ A
Sbjct: 1   VVCPWLLRDLVDLGLWDDNMKNMIIAHNGSVQNIPNIPDNVKAIYKTVWEISQKKVLDLA 60

Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919
           + R           L+L +        ++   W  GLKT  YYLR+R A    + T+   
Sbjct: 61  ADRGG---------LHLPD--------MHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQS 103

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSC 944
             K              S    SS 
Sbjct: 104 VLKTAKAQNKGTIERKVSTTTVSSA 128


>gi|451954|gb|AAA16736.1| ribonucleotide reductase large subunit [Human herpesvirus 6]
          Length = 809

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 108/625 (17%), Positives = 199/625 (31%), Gaps = 90/625 (14%)

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
               E     ++R+   L  +   +     E Y    + + M           +     S
Sbjct: 164 NGVEESIPCIYLRMCATLT-EIVLRIGYLREIYQ--ENPYVMFEELAFSLFTQKWVLPFS 220

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI----- 425
           C   T    +      + + A+       L  D+T V G        NG +  +      
Sbjct: 221 C--MTNLGLVEKANSTVFDVAIYNTCLYSL-VDFTIVNGEHLFPALLNGSNISMNLTRYQ 277

Query: 426 ----PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
                  ++       V +   +   +  Y+E WH+    +LDL +       +T  +  
Sbjct: 278 QEAKNIFEILLSQIRVVERDTDKTVQLTVYVEVWHVSALMWLDLYEALP----QTSRVTF 333

Query: 482 ANWIPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
              IP +FM R   + A W+LF  +   +L       F   Y  +ER  D  +I +   I
Sbjct: 334 CLIIPGIFMDRYELKRAQWSLFHKNIAFELGKCDEITFSTKYLEFERTTDHAKITMSSFI 393

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
             + L  K        G   + F+      S   HV +    +    + +    +    C
Sbjct: 394 EKICLCLKG-------GRMGLIFRKNVYQYSMIPHVPLYCGGDF---LDVLPVRDGINTC 443

Query: 601 NLGSINLLAHFANNQFD-----------------YDKLASTIRTAVRVLDNVIDINCHTI 643
               +N++    +   D                 +++L   +R  V V + VID      
Sbjct: 444 MRMLLNVVHFLGDEVSDELTEEIDFVRLQCKFFMFNELRRVVRKMVLVANAVIDYAVENK 503

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           +   +     R++G+ + G  S    + + YA P+A  +     E I +  +  SV+   
Sbjct: 504 DFLCEGIEDGRSLGICVTGLHSVFMTVGLSYAHPDARRLYRMICEHIYYTCVRTSVDCCM 563

Query: 704 ER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +     + F  S +  G+   D    +     E          W  L+K V   G+RN +
Sbjct: 564 KGAEPCNLFDRSKYALGMLYFDHFDNVECTLPE--------ELWTTLRKDVLMHGVRNIH 615

Query: 763 CMAIAPTATIAN-----ICGVSQSIDPSYQN----------------------LYVKSNM 795
                 TA  A      I   S+S  P   N                      +Y     
Sbjct: 616 F-----TAGTAMQKEFDIINSSESFWPMEDNKILRRSNIKVVIGKDGLNDVTSVYSSELK 670

Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855
           S    V N+ L+N   +   + + +   +   D ++   + + D    +    F      
Sbjct: 671 SLYIPVYNNLLLNRFNKHQQYLKTVGYRVLNVDTNLFTDKELDD--LAVFKDGFSYHLND 728

Query: 856 LIESASRRQKWIDQAQSLNLYLDEP 880
           LIE       ++DQ Q+   Y ++ 
Sbjct: 729 LIEMYKSGLPFLDQGQANVFYFNDT 753


>gi|187736452|ref|YP_001878564.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187426504|gb|ACD05783.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1180

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 110/641 (17%), Positives = 202/641 (31%), Gaps = 116/641 (18%)

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVA-----MGLALKETEKEKRAVEFYNLLSSFHFM 352
              L D    +     + + Q  +   +     +G   +         E Y    +  + 
Sbjct: 125 FATLEDAEIFNEEIKAM-LVQQIWAPNSPVWFNIGHWEQWRWGRPDLRENYTGHGNKAYH 183

Query: 353 CSTP------TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406
                      +  S   +PQ S+CFLT V D +  I   L     +     G+G + + 
Sbjct: 184 TKGTKNNLKTFMVQSTYEYPQCSACFLTEVGDSMEDILDHLTTEGRIFASGSGVGINLST 243

Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDL 465
           +R     I G  G+S G I F +  +  A A+  GGK R+ A    + + H D+ EF++ 
Sbjct: 244 LRSSKEPISG-KGRSSGPISFDRGWDRMAGAIKSGGKTRRAARMVLMFSDHPDIFEFINT 302

Query: 466 RKNTGDD---RRRTHDMNTANW-----------------------IP-------DLFMKR 492
           +    D      R H+++                           +P       D  M  
Sbjct: 303 KNRQEDIAKVILREHNVHVELKQIAETKLVAGTPAEKAAARVILSLPLATRNSFDPHMDA 362

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552
           +      +  + +    L   + +        Y R        + +   A  L   M   
Sbjct: 363 LLYGETLSHQNANHSVSLKGDFWQALANNGNTYTRWVTNPA-HIEQTFRAQELLEAMAQS 421

Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-- 610
           +++ G P +   D  N+ +P + +G + +SN C+E    ++      CNL S N      
Sbjct: 422 IWDNGEPGVHNNDVINLWNPVKSIGTITTSNPCSEYVFLNN----TSCNLSSFNAYRFLI 477

Query: 611 ---FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667
                   FD D L    R A+   D  ++     IE+  +  + +R  G+G      +L
Sbjct: 478 KGEDGKPVFDADALTHAARLAMVCADLNVERGGFPIEEIAEGTYKYRTTGIGFANVGGSL 537

Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL------------ 715
             L +PY S E   IA +    ++    +AS E+  E G+Y  +  S             
Sbjct: 538 MALGVPYDSDEGRWIASQLCSALTAACWTASAEMGAELGSYVEYPASKKDLLAVLRLHNA 597

Query: 716 -----------------------------------------WDQGVFPIDSIGLLAEVRD 734
                                                    +    +           R+
Sbjct: 598 AQKLASALPSQKDSKTLDDLIENIIANAGGILPEAQGLTASYALHAYLKSFKAPTMMNRE 657

Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA-PTATIANICGV----SQSIDPSYQNL 789
            +A          ++  +V       +  +++  PT TI+   G     + SI+P Y  +
Sbjct: 658 RIAPAAKLAEAASDMWAKVIKATAHRNAFVSVMAPTGTISAPLGCYDEGTTSIEPDYTLV 717

Query: 790 YVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
             K     G   + N   +  L+     ++ +        G
Sbjct: 718 KWKQLAGGGSLKMFNRLALEGLRSLGYPEDFVNEAALEVAG 758



 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 12/139 (8%)

Query: 822 SDLKYHDG--SIGNIERIPDDLKKIHATAFE-------IDPMWLIESASRRQKWIDQAQS 872
            +L   +G   I +I  +      +   A         I P   +      Q +I  A S
Sbjct: 825 DELAVVNGAAHIESIPWLNKKDLPVFDCAATNGNGIRAISPAGHVLMLGALQPFISGACS 884

Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV--EKSTLKGVDGKLNAVPVT 929
             + +    S + +      +  +G+K     R+ S  +      T +    K N V   
Sbjct: 885 KTVNMPVSASVQDIYDSLIMSHELGVKCIAIFRAGSKANAVYVVDTPETRMFKANHVWEQ 944

Query: 930 DPNSSTHSLGIPSSCTSDT 948
             N+ + ++    +  S  
Sbjct: 945 LVNAGSDAIDEIIAEASKP 963


>gi|9628330|ref|NP_042921.1| ribonucleotide reductase subunit 1 [Human herpesvirus 6]
 gi|1710386|sp|P52343|RIR1_HHV6U RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|854007|emb|CAA58408.1| U28, RR1 [Human herpesvirus 6]
          Length = 804

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 106/620 (17%), Positives = 198/620 (31%), Gaps = 80/620 (12%)

Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370
               E     ++R+   L  +   +     E Y    + + M           +     S
Sbjct: 159 NGVEESIPCIYLRMCATLT-EIVLRIGYLREIYQ--ENPYVMFEELAFSLFTQKWVLPFS 215

Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI----- 425
           C   T    +      + + A+       L  D+T V G        NG +  +      
Sbjct: 216 C--MTNLGLVEKANSTVFDVAIYNTCLYSL-VDFTIVNGEHLFPALLNGSNISMNLTRYQ 272

Query: 426 ----PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
                  ++       V +   +   +  Y+E WH+    +LDL +       +T  +  
Sbjct: 273 QEAKNIFEILLSQIRVVERDTDKTVQLTVYVEVWHVSALMWLDLYEALP----QTSRVTF 328

Query: 482 ANWIPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
              IP +FM R   + A W+LF  +   +L       F   Y  +ER  D  +I +   I
Sbjct: 329 CLIIPGIFMDRYELKRAQWSLFHKNIAFELGKCDEITFSTKYLEFERTTDHAKITMSSFI 388

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
             + L  K        G   + F+      S   HV +    +    + +    +    C
Sbjct: 389 EKICLCLKG-------GRMGLIFRKNVYQYSMIPHVPLYCGGDF---LDVLPVRDGINTC 438

Query: 601 NLGSINLLAHFANNQFD-----------------YDKLASTIRTAVRVLDNVIDINCHTI 643
               +N++    +   D                 +++L   +R  V V + VID      
Sbjct: 439 MRMLLNVVHFLGDEVSDELTEEIDFVRLQCKFFMFNELRRVVRKMVLVANAVIDYAVENK 498

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
           +   +     R++G+ + G  S    + + YA P+A  +     E I +  +  SV+   
Sbjct: 499 DFLCEGIEDGRSLGICVTGLHSVFMTVGLSYAHPDARRLYRMICEHIYYTCVRTSVDCCM 558

Query: 704 ER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
           +     + F  S +  G+   D    +     E          W  L+K V   G+RN +
Sbjct: 559 KGAEPCNLFDRSKYALGMLYFDHFDNVECTLPE--------ELWTTLRKDVLMHGVRNIH 610

Query: 763 CMAIAPTATIANICGVSQSIDPSYQN----------------------LYVKSNMSGDFT 800
             A        +I   S+S  P   N                      +Y     S    
Sbjct: 611 FTAGTAMQKEFDIINSSESFWPMEDNKILRRSNIKVVIGKDGLNDVTSVYSSELKSLYIP 670

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
           V N+ L+N   +   + + +   +   D ++   + + D    +    F      LIE  
Sbjct: 671 VYNNLLLNRFNKHQQYLKTVGYRVLNVDTNLFTDKELDD--LAVFKDGFSYHLNDLIEMY 728

Query: 861 SRRQKWIDQAQSLNLYLDEP 880
                ++DQ Q+   Y ++ 
Sbjct: 729 KSGLPFLDQGQANVFYFNDT 748


>gi|213419184|ref|ZP_03352250.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 205

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 42/217 (19%)

Query: 699 VELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDEL 749
           + LA+ER   ++ F  S +  G +       D     A+VR   A   +   +R  W +L
Sbjct: 1   MRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKL 60

Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808
           +  V   G+ N N  A+ PT +I+ I   + SI P    + ++    +G       F+ N
Sbjct: 61  RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN 120

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                          +   ++  A++I P  +I++ +   + +D
Sbjct: 121 -------------------------------ENLDMYQDAYDIGPEKIIDTYAEATRHVD 149

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           Q  SL L+  +  + + ++     AW  G+K+ YY+R
Sbjct: 150 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 186


>gi|298256075|gb|ADI71316.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Bohle iridovirus]
          Length = 254

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 115/290 (39%), Gaps = 44/290 (15%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVAHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L ++++ TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-KSNHTHRAIGLG 659
                 D  K    +   V +LDNVI             +    R+    
Sbjct: 207 ------DEWKETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGE 250


>gi|9633099|ref|NP_050209.1| large ribonuclease reductase [Human herpesvirus 6]
 gi|82007175|sp|Q9QJ39|RIR1_HHV6Z RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|5733539|gb|AAD49642.1|AF157706_39 U28 [Human herpesvirus 6B]
          Length = 804

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 201/644 (31%), Gaps = 87/644 (13%)

Query: 311 GSRIEMPQAFFMRVAMGLA----LKETEKEKRAVEFYNLLSSFHFMCSTPTLF--NSGTR 364
               E     ++R+   L          +E      Y +     F   T       S   
Sbjct: 159 NGVEESIPCIYLRMCATLTEIVLRNGYLREIYQENPYVIFEELAFSLFTQKWVLPFSCMT 218

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  L     +TV D              +      L         +  ++     +++ +
Sbjct: 219 NLGLVEKANSTVFDVAIYNTCLYSLADFITVNGEHLFPALLNGSNISMNVTRYQQEAKNI 278

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
              L         V +   +   +  Y+E WH+    +LDL +   +  R    +     
Sbjct: 279 FEILL---SQIQVVERDTDKTVQLTVYVEVWHVSALTWLDLYQVLPETSR----VTFCLI 331

Query: 485 IPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           IP +FM R   + A W+LF  +   +L       F   Y  +ER  D  +I +   +  +
Sbjct: 332 IPGIFMDRYELKRAQWSLFHKNIAFELGKCDEVTFSTKYLEFERTTDHAKITMASFVEKI 391

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
               K        G   + F+      S   HV +    +    + +    +    C   
Sbjct: 392 CRCLK-------RGRMGLIFRKNVYQYSMIPHVPLYCGGDF---LDVLPVRDGINTCLRM 441

Query: 604 SINLLAHFANNQFD-----------------YDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            +N++    +   D                 +++L   +R  V V + VID      +  
Sbjct: 442 LLNVVHFLGDEVSDELTEEIDFVRLQCKFFMFNELRRVVRKMVLVANAVIDYAVDNKDFL 501

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
           ++     R++G+ + G  S    + + YA P+A  +     E I +  +  SV+   +  
Sbjct: 502 REGIVDGRSLGICITGLHSVFMTVGLSYAHPDACRLYRMMCEHIYYTCVRTSVDCCMKGA 561

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
              + F  S +  G+   D    +     E          W  L+K V   G+RN +   
Sbjct: 562 EPCNLFDRSKYALGMLYFDQFDNVECTLPE--------ELWTTLRKDVLMHGVRNIHF-- 611

Query: 766 IAPTATIAN-----ICGVSQSIDPSYQN----------------------LYVKSNMSGD 798
              TA  A      I   S+S  P   N                      +Y     S  
Sbjct: 612 ---TAGTAMQKEFDIINSSESFWPMEDNKILRRSNIKVVIGKDGLNDVTSVYSSELKSLY 668

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             V N+ L+N   +   + + +   +   D ++   + + D    +    F      LIE
Sbjct: 669 IPVYNNLLLNRFNKHQQYLKTVGYRVLNVDTNLFTDKELDD--LAVFKDGFSYPLNDLIE 726

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK-TTY 901
                  ++DQ Q+   Y ++ +   L  +    +  G K   Y
Sbjct: 727 MYKSGLPFLDQGQANVFYFND-TVS-LKHLLPLLYKTGFKVAMY 768


>gi|4996016|dbj|BAA78249.1| ribonucleotide reductase large sub-unit [Human herpesvirus 6B]
          Length = 804

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 201/644 (31%), Gaps = 87/644 (13%)

Query: 311 GSRIEMPQAFFMRVAMGLA----LKETEKEKRAVEFYNLLSSFHFMCSTPTLF--NSGTR 364
               E     ++R+   L          +E      Y +     F   T       S   
Sbjct: 159 NGVEESIPCIYLRMCATLTEIVLRNGYLREIYQENPYVIFEELAFSLFTQKWVLPFSCMT 218

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
           +  L     +TV D              +      L         +  ++     +++ +
Sbjct: 219 NLGLVEKANSTVFDVAIYNTCLYSLADFITVNGEHLFPALLNGSNISMNVTRYQQEAKNI 278

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
              L         V +   +   +  Y+E WH+    +LDL +   +  R    +     
Sbjct: 279 FEILL---SQIQVVERDTDKTVQLTVYVEVWHVSALTWLDLYQVLPETSR----VTFCLI 331

Query: 485 IPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           IP +FM R   + A W+LF  +   +L       F   Y  +ER  D  +I +   +  +
Sbjct: 332 IPGIFMDRYELKRAQWSLFHKNIAFELGKCDEVTFSTKYLEFERTTDHAKITMASFVEKI 391

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
               K        G   + F+      S   HV +    +    + +    +    C   
Sbjct: 392 CRCLK-------RGRMGLIFRKNVYQYSMIPHVPLYCGGDF---LDVLPVRDGINTCLRM 441

Query: 604 SINLLAHFANNQFD-----------------YDKLASTIRTAVRVLDNVIDINCHTIEKA 646
            +N++    +   D                 +++L   +R  V V + VID      +  
Sbjct: 442 LLNVVHFLGDEVSDELTEEIDFVRLQCKFFMFNELRRVVRKMVLVANAVIDYAVENKDFL 501

Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705
           ++     R++G+ + G  S    + + YA P+A  +     E I +  +  SV+   +  
Sbjct: 502 REGIVDGRSLGICITGLHSVFMTVGLSYAHPDACRLYRMMCEHIYYTCVRTSVDCCMKGA 561

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
              + F  S +  G+   D    +     E          W  L+K V   G+RN +   
Sbjct: 562 EPCNLFDRSKYALGMLYFDQFDNVECTLPE--------ELWTTLRKDVLMHGVRNIHF-- 611

Query: 766 IAPTATIAN-----ICGVSQSIDPSYQN----------------------LYVKSNMSGD 798
              TA  A      I   S+S  P   N                      +Y     S  
Sbjct: 612 ---TAGTAMQKEFDIINSSESFWPMEDNKILRRSNIKVVIGKDGLNDVTSVYSSELKSLY 668

Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858
             V N+ L+N   +   + + +   +   D ++   + + D    +    F      LIE
Sbjct: 669 IPVYNNLLLNRFNKHQQYLKTVGYRVLNVDTNLFTDKELDD--LAVFKDGFSYPLNDLIE 726

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK-TTY 901
                  ++DQ Q+   Y ++ +   L  +    +  G K   Y
Sbjct: 727 MYKSGLPFLDQGQANVFYFND-TVS-LKHLLPLLYKTGFKVAMY 768


>gi|329113327|ref|ZP_08242108.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
 gi|326697152|gb|EGE48812.1| Ribonucleoside-diphosphate reductase subunit alpha [Acetobacter
           pomorum DM001]
          Length = 255

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 104/212 (49%), Gaps = 11/212 (5%)

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344
           +   RD      G   L +RY L   G      Q  F RVA             A   Y+
Sbjct: 46  VDRSRDALLTPFGKATLDNRYLLPDEGY-----QDLFGRVASYYGA----DAAHAQRIYD 96

Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +S   FM +TP L N GT      SCFL    D L GI     EN  LA   GG+G+ W
Sbjct: 97  YISKHWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYW 156

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
             +R +G ++   NGK+ GVIPF++V +   +A++QG  R+G+   YL  WH ++EEF++
Sbjct: 157 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 215

Query: 465 LRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQ 495
           LR+ T GD  R+  +++    + D FM+ V  
Sbjct: 216 LRRPTGGDPNRKALNLHHGVLVSDAFMRAVKA 247


>gi|298256079|gb|ADI71318.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [European catfish virus]
 gi|298256083|gb|ADI71320.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [European sheatfish virus]
          Length = 254

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 120/294 (40%), Gaps = 50/294 (17%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSISHPDLVEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVTHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L ++++ TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLHPALKRKGLKIMGSNLCNEIHLPTAADRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINC-------HTIEKAKKSNHTHRAIG 657
                 D  +    +   V +LDNVI               +A +S    R+IG
Sbjct: 207 ------DEWRETDLVECLVEMLDNVIQTFVDGAPLKTPHTARAVRSAAGERSIG 254


>gi|298256087|gb|ADI71322.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Pike-perch iridovirus]
          Length = 254

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 115/290 (39%), Gaps = 44/290 (15%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVAHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L ++++ TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-KSNHTHRAIGLG 659
                 D  +    +   V +LDNVI             +    R+    
Sbjct: 207 ------DEWRETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGE 250


>gi|298256089|gb|ADI71323.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Rana esculenta virus]
          Length = 254

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 115/290 (39%), Gaps = 44/290 (15%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVAHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L ++++ TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-KSNHTHRAIGLG 659
                 D  +    +   V +LDNVI             +    R+    
Sbjct: 207 ------DEWRETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAASE 250


>gi|78044308|ref|YP_360870.1| anaerobic ribonucleoside triphosphate reductase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996423|gb|ABB15322.1| anaerobic ribonucleoside-triphosphate reductase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 671

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FDP+KI+ AI KA  AV G         ++    LT Q +  L     +
Sbjct: 4   EIIKRDGRVVPFDPNKITEAIFKAARAVGG-------EDRETALKLTLQVLGYLKAK-YN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++ED+QD VE  L+++GH K  + Y+LYR +R+ +R  +S  
Sbjct: 56  GNLFNVEDVQDAVEKILIENGHAKTAKAYILYRAKRTAIREGKSEL 101


>gi|298256081|gb|ADI71319.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Epizootic haematopoietic necrosis virus]
          Length = 254

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 119/288 (41%), Gaps = 38/288 (13%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVAHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L ++++ TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDK-LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657
               + D  + L   +   ++   +   +      +A +S    R+IG
Sbjct: 207 NEWRETDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIG 254


>gi|298256077|gb|ADI71317.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Cod iridovirus/15/04.11.92/DNK]
          Length = 254

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 115/290 (39%), Gaps = 44/290 (15%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVAHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L ++++ TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLNPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-KSNHTHRAIGLG 659
                 D  +    +   V +LDNVI             +    R+    
Sbjct: 207 ------DEWRKTDLVECLVEMLDNVIQTFVDEAPLRTPHTARAVRSAAGE 250


>gi|298256085|gb|ADI71321.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Ranavirus maxima/9995205/DNK]
          Length = 254

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 115/290 (39%), Gaps = 44/290 (15%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             VPD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYVPDTIEGLVDHTSELRWLSVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    I D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVAHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L ++++ TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLNPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-KSNHTHRAIGLG 659
                 D  +    +   V +LDNVI             +    R+    
Sbjct: 207 ------DEWRKTDLVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGE 250


>gi|146295813|ref|YP_001179584.1| anaerobic ribonucleoside triphosphate reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409389|gb|ABP66393.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 695

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G   S       I + LT+Q +  LL+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGGSNYS-------IAEKLTDQVIE-LLEKKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
           +D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 EDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|298256091|gb|ADI71324.1| ribonucleoside diphosphate reductase alpha subunit-like protein
           [Short-finned eel ranavirus]
          Length = 254

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 114/290 (39%), Gaps = 44/290 (15%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
             +PD + G+     E   L+   GG+   W         + G + KS G IPFL   + 
Sbjct: 1   LYIPDTIEGLVDHTSELRWLSVRGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDA 53

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              A  QG  R+G+  AY+   H D+ EF+ +R  TGD  R+  +++    + D FM+ V
Sbjct: 54  DMSAYWQGKVRRGSYAAYMSVSHPDLIEFITMRTPTGDVNRKNLNLHHGVNVTDAFMRCV 113

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553
            +   W L  P                               V   +SA  LW ++L   
Sbjct: 114 ERGENWDLVDPKS---------------------------GAVTHTVSARELWERILETR 146

Query: 554 FETGHPWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
           F TG P++ F D  N       ++    +  SNLC EI L +S + TAVC L S+NL  +
Sbjct: 147 FRTGEPYLNFIDAANRGLHPALKRKGLRIRGSNLCNEIHLATSEDRTAVCCLSSVNLERY 206

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-KSNHTHRAIGLG 659
                 D  +    I   V +LDNVI             +    R+    
Sbjct: 207 ------DEWRGTDLIECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGE 250


>gi|225175480|ref|ZP_03729474.1| anaerobic ribonucleoside-triphosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168809|gb|EEG77609.1| anaerobic ribonucleoside-triphosphate reductase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 673

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 7/105 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++ KR+G V  FD  KI+ AI+KA  AV G+          I  +LT Q V+ L +   
Sbjct: 3   IEIKKRDGRVVPFDAEKITDAILKAAKAVGGENK-------KIAVSLTNQVVSELTKMGY 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + +I  +ED+QD VE  L+++GH +  + Y+LYR  RS +R  +S
Sbjct: 56  NGIIPAVEDVQDTVEKVLIENGHARTAKAYILYRHRRSRIREGKS 100



 Score = 41.4 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-------KIVLSETYKNMYDGL--SE 195
           ++I   DG ++ F+++++   + +A   +   +          V+SE  K  Y+G+  + 
Sbjct: 3   IEIKKRDGRVVPFDAEKITDAILKAAKAVGGENKKIAVSLTNQVVSELTKMGYNGIIPAV 62

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
            D++          +  E  +A+    ++L + RR
Sbjct: 63  EDVQDT-----VEKVLIENGHARTAKAYILYRHRR 92


>gi|222528565|ref|YP_002572447.1| anaerobic ribonucleoside triphosphate reductase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455412|gb|ACM59674.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 695

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G           I + LT+Q +  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGG-------SDYSIAEKLTDQVIE-ILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
            D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|312623134|ref|YP_004024747.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203601|gb|ADQ46928.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 695

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G           I + LT+Q +  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGG-------SDYSIAEKLTDQVIE-ILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
            D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|312134451|ref|YP_004001789.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor owensensis OL]
 gi|311774502|gb|ADQ03989.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor owensensis OL]
          Length = 695

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G           I + LT+Q +  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGG-------SDYSIAEKLTDQVIE-ILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
            D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|302871165|ref|YP_003839801.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574024|gb|ADL41815.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 695

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G           I + LT+Q +  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGG-------SDYSIAEKLTDQVIE-ILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
            D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|312128309|ref|YP_003993183.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778328|gb|ADQ07814.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 695

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G           I + LT+Q +  +L+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGG-------SDYSIAEKLTDQVIE-ILEQKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
            D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|312792793|ref|YP_004025716.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179933|gb|ADQ40103.1| anaerobic ribonucleoside-triphosphate reductase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 695

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G           I + LT+Q +  LL+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGG-------SDYSIAEKLTDQVIE-LLEKKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
            D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|312878494|ref|ZP_07738382.1| ATP-cone domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794730|gb|EFR11171.1| ATP-cone domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 203

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G +  FD  KI  AI KA  AV G           I + LT+Q +  LL+    
Sbjct: 4   KVMKRDGTIVDFDRKKIENAIFKAAKAVGG-------SDYSIAEKLTDQVIE-LLEKKFG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I H+EDIQD VE  L+++GH K  + Y+LYR++  D+R  ++          +  I  
Sbjct: 56  YSIPHVEDIQDIVEKVLIENGHAKTAKAYILYRKQHQDMREFKNLFLDIENTVDQ-YIGK 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
            D  +       ++ + L   +  A      L  +  K V  
Sbjct: 115 MDWRVNENSNMSYSLQGLNNHISTAVISKYWLNKIYPKEVAE 156


>gi|330861131|emb|CBX71394.1| hypothetical protein YEW_EY21260 [Yersinia enterocolitica W22703]
          Length = 171

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 33/165 (20%)

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFT 800
            +  W  L++ V   G+ N N  A+ PT +I+ I   + SI P    + ++     G   
Sbjct: 19  DQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEGKIGRVY 78

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               ++ N+                                 + +  A++I P  +I++ 
Sbjct: 79  YPAPYMTND-------------------------------NLEYYQDAYQIGPEKIIDTY 107

Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           +   + +DQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 108 AEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 152


>gi|326390979|ref|ZP_08212529.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993021|gb|EGD51463.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 692

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ AI KAF AVE      ++   +I   +TE     L    
Sbjct: 4   AMKVIKRDGREVEFDKIKIANAIYKAFKAVEEGEYKDAL---EIADEVTEYVENNLE--- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  ++R  +        +  +  I
Sbjct: 58  ---GIASVEQIQDIVEQYLIKHGHAKAAKAYILYRKQHQEIREFKKMFMDIEKMVDE-YI 113

Query: 148 MMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
              D  +       ++ + L   +     A   L  +    V
Sbjct: 114 GKQDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|218509638|ref|ZP_03507516.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Brasil 5]
          Length = 392

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 116/315 (36%), Gaps = 42/315 (13%)

Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDYDKLASTIRTAVRVLD 633
            G +  SN C+E        +   CNL S+NLL     A  + +       +R    VL+
Sbjct: 6   GGPIRGSNPCSEYMF----LDDTACNLASLNLLQFKDKATKRINIADYEHAVRLWTVVLE 61

Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693
             + +     ++  + ++ +R +GLG       L    IPY S EA  IA      ++  
Sbjct: 62  VSVMMAQFPSKRIAELSYEYRTLGLGYANIGGLLMSSGIPYDSAEARAIAGSLTAIMTGI 121

Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFP------------------IDSIGLLAEVRDE 735
             + S E+A E G + +F  +                          ID + L+     +
Sbjct: 122 CYATSAEMAAELGPFPNFAPNRESMLRVIRNHRRAAYGETSGYEALSIDPVALIHSENPD 181

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKS 793
             +   ++  WD+  +  +  G RN+    IAPT TI  +    +  I+P +  + + K 
Sbjct: 182 QDLAAHAKSAWDKALELGEQHGYRNAQVSVIAPTGTIGLVMDCDTTGIEPDFALVKFKKL 241

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--DGSIGNIERI-PDDLKKI------ 844
              G F ++N  + + L+     +  +     Y    G++     I P  LK        
Sbjct: 242 AGGGYFKIINRAVPDALRTLGYSESQIAEIEAYAVGHGNLNQAPAINPSTLKAKGLTDEK 301

Query: 845 -------HATAFEID 852
                    +AF+I 
Sbjct: 302 VEAVNAALKSAFDIK 316


>gi|301792387|ref|XP_002931160.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Ailuropoda melanoleuca]
          Length = 260

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201
            + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T 
Sbjct: 111 TMHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTL 170

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
              ++ TL  + P+YA + AR  +  L +E         +K     M+ LY         
Sbjct: 171 AAETAATLTTEHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGR 222

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
                      ++  +   L + + Y+RDF++ Y G +
Sbjct: 223 HSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 260



 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGG--VTSFDPSKISRAIMK 52
           +  V     +  P      P+    + VIKR+G      FD  KI+  I K
Sbjct: 87  TFSVPPAPPNCSPVSNPSAPQPPATMHVIKRDGRQERVMFD--KITSRIQK 135


>gi|260893396|ref|YP_003239493.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
 gi|260865537|gb|ACX52643.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
          Length = 670

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 13/161 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FDP++I+ AI KA  AV G         ++    LT + +  L     + 
Sbjct: 5   IRKRDGREVPFDPNRITEAIFKAARAVGG-------EDRETAMRLTLEVMKYLKAR-YNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM-M 149
            I  +ED+QD VE  L++ GH K  + Y+LYR  R+ +R A+S       +A  LK    
Sbjct: 57  TIFGVEDVQDAVEKVLIEHGHAKTAKAYILYRAWRTRIREAKSELM--DAVADILKETHK 114

Query: 150 DDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVLSETYKN 188
           ++  + +  S ++  I E A     L  +  +       + 
Sbjct: 115 ENANVSNSPSGKMLQIAEAASKKYYLTRLIPEEFAQAHIQG 155


>gi|329729535|gb|EGG65936.1| ribonucleoside-diphosphate reductase subunit alpha domain protein
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 208

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 39/227 (17%)

Query: 688 EFISFHAISASVELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNR 740
             ++F++I  S+E+A+ERG  Y  F+ S +  G +       +      +VR+    M  
Sbjct: 1   MMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAI 60

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
            +   W +L++ V+  G+ ++  +AIAPT +I+ +   + S+ P    +  ++  + +  
Sbjct: 61  PTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETF 120

Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860
               F    L  + +W                            + +AF  D M LI+  
Sbjct: 121 YPMPF----LSPQTMW---------------------------YYKSAFNTDQMKLIDLI 149

Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +  Q  IDQ  S  LY++ E S ++L  +Y  A   GLK+ YY R++
Sbjct: 150 ATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 196


>gi|297616998|ref|YP_003702157.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144835|gb|ADI01592.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 671

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 10/121 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FDPSKI+ AI KA  AV G         +     LT + +  L Q    
Sbjct: 4   KIKKRDGREVPFDPSKITEAIFKAAQAVGG-------EDRQKSLELTLEVMRVLGQK-YQ 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +ED+QD VE  L++ GH K  + Y+LYR++R+  R A+S       +   LK   
Sbjct: 56  GEVFTVEDVQDIVEKVLIEHGHAKTAKAYILYRDQRTRYREAKSDLM--DVVEEILKETS 113

Query: 150 D 150
            
Sbjct: 114 R 114


>gi|296133640|ref|YP_003640887.1| anaerobic ribonucleoside-triphosphate reductase [Thermincola sp.
           JR]
 gi|296032218|gb|ADG82986.1| anaerobic ribonucleoside-triphosphate reductase [Thermincola potens
           JR]
          Length = 675

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G V  F+ +KI+ AI KA  AV G         + I   LT + +  L Q   + 
Sbjct: 5   IKKRDGRVVDFNETKITDAIFKAAQAVGG-------EDRQIAMELTLEVLKYLKQK-YNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +ED+QD VE  L+++GH K  + Y+LYR  R+ +R A+S       +   L+    
Sbjct: 57  QLFSVEDVQDAVEKILIENGHAKTAKAYILYRAHRTRIREARSELM--DAVQEILRETNR 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           +   IS +     + +  A S    +S  I   +   ++   +   DL+
Sbjct: 115 ENANISNSPSAKMLQIASAASKNFYLSRMIPEEQAQAHINGDIHIHDLD 163


>gi|302390515|ref|YP_003826336.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201143|gb|ADL08713.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermosediminibacter oceani DSM 16646]
          Length = 696

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G V  FD  KI  AI KA  AV G         + I + LT++ + ++L+    
Sbjct: 4   QIIKRDGTVQKFDREKIENAIFKAARAVGG-------SDRTIAQRLTDEVI-KILEKRYR 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E++QD VE  L+++GH +  + Y+LYR++  D+R  +              I  
Sbjct: 56  GSVPTVENVQDTVEKVLIENGHARTAKAYILYRKQHQDMREFRKVFLDIEDTVDN-YIGR 114

Query: 150 DDGTLIS-----FNSKRLEMIVEEAC---SGLQDVSSKIV 181
            D  +       F+ + L   +  A      L  +  + V
Sbjct: 115 TDWRINENSNMGFSLQGLNNHISSAVISKYWLSKIYPEEV 154


>gi|332981657|ref|YP_004463098.1| anaerobic ribonucleoside-triphosphate reductase [Mahella
           australiensis 50-1 BON]
 gi|332699335|gb|AEE96276.1| anaerobic ribonucleoside-triphosphate reductase [Mahella
           australiensis 50-1 BON]
          Length = 695

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 17/159 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  F  SKI  AI KA  AV G         + I   LT++ V  LLQ     
Sbjct: 9   IKKRDGRIVEFQRSKIEDAIFKAAQAVGG-------SDRSIAVRLTDKVVDMLLQRF-DG 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +ED+QD VE  L++ G+ +  + Y+LYR++  D+R  +        +  +  I   
Sbjct: 61  GMPSVEDVQDIVEKVLIEEGYARTAKAYILYRKQHQDIREIKKALLDVEDLVDQ-YIGKM 119

Query: 151 DGTLIS-----FNSKRLEMIVE---EACSGLQDVSSKIV 181
           D  +       ++ + L   +     +   L  +    V
Sbjct: 120 DWRINENSNMGYSLQGLNNHISTTVTSSYWLNKIYPVEV 158


>gi|147678177|ref|YP_001212392.1| anaerobic ribonucleoside triphosphate reductase [Pelotomaculum
           thermopropionicum SI]
 gi|146274274|dbj|BAF60023.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Pelotomaculum thermopropionicum SI]
          Length = 670

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD +KI+ AI KA  AV G         +     LT + + +LL+   + 
Sbjct: 5   IKKRDGREVPFDETKITDAIFKAARAVGG-------EDRQTAMELTIEVL-KLLKKKYNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +ED+QD VE  L+++GH +  + Y+LYR++R+ +R A+S       +   L+    
Sbjct: 57  SVFGVEDVQDVVEKVLIEAGHARTAKAYILYRDKRTRIREAKSDLM--DAVEEILEETNR 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           +   IS +     + +  A S    ++  I    +  ++   +   DL+
Sbjct: 115 ENANISNSPSAKMLQIASAASKKYYLTRLIPEEMSQAHLRGDIHIHDLD 163


>gi|292491694|ref|YP_003527133.1| ribonucleoside-triphosphate reductase [Nitrosococcus halophilus
           Nc4]
 gi|291580289|gb|ADE14746.1| Ribonucleoside-triphosphate reductase [Nitrosococcus halophilus
           Nc4]
          Length = 1129

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 32/220 (14%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF-MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           QV KR+G +  FD S+I+ AI +A   + EG  A    RV       +++ +  L Q   
Sbjct: 11  QVRKRDGRLVPFDQSRITHAIFRAMEASKEGDLAHDPSRV-------SDKVIAELNQQYP 63

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
           +  I  +E+IQD VE +L+     K  + Y+LYR +R+ +R                   
Sbjct: 64  ATHIPQVEEIQDLVEETLILMEFAKTAKAYILYRHKRAQIRKKAKAVPEKVKQLATESKS 123

Query: 147 ---------IMMDDGTLISFNSKRLEMIV-----------EEACSGLQDVSSKIVLSETY 186
                    I     +       R E  +           E+    L  V  + +     
Sbjct: 124 FFSNALAEFIYYRTYSRWLEEENRRETWIETVERYMAFMKEKLGKDLSSVEYQEIHQAIL 183

Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLE 226
           +     +    L  +   ++R       N + +    L +
Sbjct: 184 QQ--QVMPSMRLLWSAGKAARVNNITAYNCSFIAPTQLQD 221


>gi|121535244|ref|ZP_01667058.1| anaerobic ribonucleoside-triphosphate reductase [Thermosinus
           carboxydivorans Nor1]
 gi|121306129|gb|EAX47057.1| anaerobic ribonucleoside-triphosphate reductase [Thermosinus
           carboxydivorans Nor1]
          Length = 671

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 13/164 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FD +KI+ AI KA  AV G           +   LT + +  L Q   +
Sbjct: 4   KIKKRDGREVPFDETKITEAIFKAAKAVGGVDK-------QLAMELTIEVLRYLKQR-YN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +ED+QD VE  L++ GH K  + Y+LYR++R+ +R A+S       +A  L    
Sbjct: 56  GSIFGVEDVQDAVEKVLIEKGHAKTAKAYILYRDKRTRMREAKSELM--DAVAEILVETS 113

Query: 150 DDGTLISFNSKRLEMIVEEA---CSGLQDVSSKIVLSETYKNMY 190
            +   +S +     + +  A      L  +  + +     +  Y
Sbjct: 114 RENANVSNSPSAKMLQIASAASKAYYLNRLIPEHLAQAHIRGDY 157


>gi|169832136|ref|YP_001718118.1| anaerobic ribonucleoside triphosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638980|gb|ACA60486.1| anaerobic ribonucleoside-triphosphate reductase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 709

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G + +F+  +I+ AI +AF A             D    +T++ +  L       
Sbjct: 5   IKKRDGRIAAFESRRITNAIAQAFKA----TGEAGWADDDAAPAVTQRVIEALENR--GI 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               +E++QD VE SLM+ G+H+  + Y+LYRE+   +R  +S
Sbjct: 59  ATPTVEEVQDLVERSLMELGYHRTAKAYILYREQHRQMREMKS 101


>gi|194333736|ref|YP_002015596.1| anaerobic ribonucleoside triphosphate reductase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311554|gb|ACF45949.1| anaerobic ribonucleoside-triphosphate reductase [Prosthecochloris
           aestuarii DSM 271]
          Length = 715

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 16/161 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G +  FD  KI+ AI +A  ++           +     L+++ V RL      
Sbjct: 12  RIIKRDGTIVPFDREKITFAIFRAMRSIGKP-------DRGYAARLSDRVVERLGSDGPD 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-- 147
             I  +E+IQD VE  L +S   +  + Y++YR + S +R A+    +   +   L +  
Sbjct: 65  -RIASVEEIQDLVERLLFESREFEAAKAYIVYRHQHSSLRQAKEIFSNIDLVDDYLHLKD 123

Query: 148 --MMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLS 183
             + ++  L S++ + L   +         L ++    +  
Sbjct: 124 WRVKENANL-SYSLQGLNHHISGLVSSQYWLHEIYPPEIAE 163


>gi|256752117|ref|ZP_05492984.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749026|gb|EEU62063.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 692

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++++ D +   T+          
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYEQAVQIADEV---TDYVEKHFE--- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +  +  I
Sbjct: 58  ---GIASVEQIQDIVEQYLIKHGHAKAAKAYILYRKQHQDIREFKKMFMDIEKMVDE-YI 113

Query: 148 MMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
              D  +       ++ + L   +     A   L  +    V
Sbjct: 114 GKLDWRVNENSNMSYSLQGLNNHISSTITAYYWLNKIYPPEV 155


>gi|162448132|ref|YP_001621264.1| anaerobic ribonucleoside triphosphate reductase [Acholeplasma
           laidlawii PG-8A]
 gi|161986239|gb|ABX81888.1| ribonucleoside-triphosphate reductase, anaerobic [Acholeplasma
           laidlawii PG-8A]
          Length = 762

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 15/183 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+P KI+ A+ KAF+A+         +   +   +T   + ++    K 
Sbjct: 4   KIKKRDGRIVRFNPEKINDAVTKAFIALG--------KDPKLADEVTTGVLNKVDSKFKK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +EDIQD+VE +L++  +  + + Y++YRE+R+ VR   +            K   
Sbjct: 56  Q-IPTVEDIQDEVERTLIELNYADVAKSYIIYREDRNKVRDRNTRLMHTYHDIAFSKSTD 114

Query: 150 DDGTLISFNSKR---LEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETA-LI 203
            D    + N      +  +++    G ++ +   VL+  +   +D   +   DL+   L 
Sbjct: 115 SDLKRENANVNGDTPMGAMLKYGSEGAKEFNRMFVLNPRHSRAHDEGIIHIHDLDFLTLT 174

Query: 204 FSS 206
            + 
Sbjct: 175 LTC 177


>gi|167037075|ref|YP_001664653.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115490|ref|YP_004185649.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166855909|gb|ABY94317.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928581|gb|ADV79266.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 692

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ AI KAF AV       ++   +I   +TE     L    
Sbjct: 4   AIKVIKRDGREVEFDKIKIANAIYKAFKAVGEGEYKDAL---EIADEVTEYVENNLE--- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ G+ K  + Y+LYR++  ++R  +        +  +  I
Sbjct: 58  ---GIASVEQIQDIVEQYLIKHGYAKAAKAYILYRKQHQEIREFKKMFMDIEKMVDE-YI 113

Query: 148 MMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
              D  +       ++ + L   +     A   L  +    V
Sbjct: 114 GKQDWRVNENSNMSYSLQGLNNHISSTITAYYWLNKIYPPEV 155


>gi|220931945|ref|YP_002508853.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Halothermothrix orenii H 168]
 gi|219993255|gb|ACL69858.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Halothermothrix orenii H 168]
          Length = 676

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F   KI  A+MKA  AV          V++I + +T + ++ L    K 
Sbjct: 4   KIKKRDGRLVPFKHEKIKNAVMKAAQAVGRND------VEEIGEEITREIISYLNIFFKD 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E +QD VE  L++ G+ +  + Y+LYRE+ + +R  +           +  +  
Sbjct: 58  EGVPTVEQVQDLVEKVLIEKGYAETAKAYILYREQHAKLRNTKKLFSDAINTINR-YLDK 116

Query: 150 DDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
            D  +       F+ + L   +     A   LQ++  K V           L   DL   
Sbjct: 117 SDWKVNENSNMGFSLQGLNNHISSEITAQYWLQEIYPKEVREHHLNG---DLHIHDLSNL 173

Query: 202 LIFSS 206
            ++  
Sbjct: 174 SVYCC 178


>gi|91202836|emb|CAJ72475.1| similar to oxygen sensitive ribonucleoside triphosphate reductase
           NrdD [Candidatus Kuenenia stuttgartiensis]
          Length = 812

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 16/180 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   KI+ AI KA  AV G         + + + L    V+  L    + 
Sbjct: 8   VVKRDGRTAPFVEKKIADAIFKAAQAVGGN-------DRALAEELAV-VVSMFLAKKYNG 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA-----AQSHSKSDAPIAPKL 145
               IE+IQD VE  L+++GH K  + Y++YR++R+ +R       QS  + D      +
Sbjct: 60  NPPGIENIQDVVEKVLIETGHAKTAKAYIIYRDKRARIRDSLRVRKQSQKRVDTTDVSLM 119

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVS---SKIVLSETYKNMYDGLSESDLETAL 202
                      ++ +++ + +E+      +V+   + +V    + +  + +S S +   +
Sbjct: 120 VDTETKDETFPWDKRKVAVALEKEADISGEVAEEIASVVEQRVFSSGLNRISTSLIRELV 179


>gi|295111909|emb|CBL28659.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Synergistetes bacterium SGP1]
          Length = 772

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI +A  AV   G             LTE+ V  + Q    
Sbjct: 4   RIRKRDGREVPFNAEKIAGAIGRALAAVGEPGTEAMP--------LTERVVAHMEQKL-Q 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E+IQD VE  L++SG  +  + Y+LYR  RS  R  +SH  +            
Sbjct: 55  GGVPQVEEIQDIVEEVLIESGRARAAKAYILYRASRSRAREMKSHLMNVYEALTFRDAQD 114

Query: 150 DDGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLS 183
            D    + N      +  ++     G +  +   +L 
Sbjct: 115 SDLKRENANIDGDTAMGTMLRYGSEGAKHFNEIFILR 151


>gi|294102547|ref|YP_003554405.1| anaerobic ribonucleoside-triphosphate reductase [Aminobacterium
           colombiense DSM 12261]
 gi|293617527|gb|ADE57681.1| anaerobic ribonucleoside-triphosphate reductase [Aminobacterium
           colombiense DSM 12261]
          Length = 678

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 18/185 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    FD SKI+ A+MKA  AV+ +         ++ + +T Q V+ L    K 
Sbjct: 4   RIRKRDGHEVPFDESKITTAVMKAAKAVDHQNP------MEVGQEITRQIVSLLEIFYKE 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E +QD VE  L++ G+  I + Y+LYRE+ + +R  +    S A +  K  +  
Sbjct: 58  EGVPTVEQVQDLVEKILIEKGYASIAKAYILYREQHAKMRDTKKLLGSAADMINK-YLEK 116

Query: 150 DD-----GTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
            D      + +S++ + L   +     A   LQ++ S  V           L   DL   
Sbjct: 117 LDWKVNENSNMSYSLQGLNNYIASELTAQYWLQEIYSPRVRERHISG---DLHIHDLSNL 173

Query: 202 LIFSS 206
            ++  
Sbjct: 174 SVYCC 178


>gi|323701309|ref|ZP_08112984.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533911|gb|EGB23775.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 676

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 16/172 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  FD +KI+ AI KA  AV G         +     LT + +  L +   + 
Sbjct: 5   IQKRDGRIVPFDETKITEAIFKAAKAVGG-------EDRQTAMELTLEVLKMLKKK-YNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E++QD VE  L+++GH +  + Y+LYR +R+ +R A+S       +A  L     
Sbjct: 57  NLFGVEEVQDMVEKVLIETGHARTAKAYILYRHQRTRLREAKSDLM--DAVAEILAETNR 114

Query: 151 DGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           +   IS +     + +  A      L  +  + +     +     +   DL+
Sbjct: 115 ENANISNSPSAKMLQIASAASKKYYLTRLIPEEMSQAHIRG---DIHIHDLD 163


>gi|327399299|ref|YP_004340168.1| anaerobic ribonucleoside-triphosphate reductase [Hippea maritima
           DSM 10411]
 gi|327181928|gb|AEA34109.1| anaerobic ribonucleoside-triphosphate reductase [Hippea maritima
           DSM 10411]
          Length = 995

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 16/179 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G +  FD  KI+ AI KA       G +      +  K LT + +  L      
Sbjct: 4   RIVKRDGRIVEFDSEKITTAITKA-------GKATGEFDYETAKKLTIKVLD-LAYRFFK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKLKI 147
                +E+IQD VE  L+ S   K  + Y++YRE+ + +R  ++ +  +       KL  
Sbjct: 56  GKTPTVEEIQDIVEEVLLSSPFKKTAKAYIIYREQHAQLREFKNRADVELVEQYLNKLDW 115

Query: 148 MMDDGTLISFNSKRLEMIVEEA---CSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + + + +SF+ + L   +  A      L  +  K +        +      DL +  +
Sbjct: 116 EVKENSNMSFSLQGLNNYISSAITKTYWLNKIYPKEIREAHLSGDF---HIHDLNSLSV 171


>gi|83590293|ref|YP_430302.1| anaerobic ribonucleoside triphosphate reductase [Moorella
           thermoacetica ATCC 39073]
 gi|83573207|gb|ABC19759.1| Ribonucleoside-triphosphate reductase, anaerobic [Moorella
           thermoacetica ATCC 39073]
          Length = 705

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V  FD  +I  AI KA  AV G       + +     L  Q    L +    
Sbjct: 5   KIIKRDGRVVDFDEERIINAIYKAAQAVGG-------QDRRQASQLANQVTALLAEKFVD 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +  +ED+QD VE  L+++GH +  + Y+LYR++ ++ R 
Sbjct: 58  -RLPTVEDVQDLVEKVLIENGHARTAKAYILYRQQHAEWRD 97


>gi|257052675|ref|YP_003130508.1| anaerobic ribonucleoside triphosphate reductase [Halorhabdus
           utahensis DSM 12940]
 gi|256691438|gb|ACV11775.1| anaerobic ribonucleoside-triphosphate reductase [Halorhabdus
           utahensis DSM 12940]
          Length = 706

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 10/111 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G V  FD SKI+ AI +AF A E    +        I  LT+  V RL   + S
Sbjct: 4   QVQKRDGTVEPFDRSKITTAIRQAFAAAETDPDTG-------IDALTDGVVDRL---DPS 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
              V +E IQD VE +L+++  +   + Y+LYR   +++R  +        
Sbjct: 54  DGTVAVETIQDCVERTLVEADEYAAAKRYILYRHRHAELRDLEGLVAGSEA 104



 Score = 44.8 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 16/154 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD--LETALI 203
           ++   DGT+  F+  ++   + +A +   +      +      + D L  SD  +    I
Sbjct: 4   QVQKRDGTVEPFDRSKITTAIRQAFAA-AETDPDTGIDALTDGVVDRLDPSDGTVAVETI 62

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRR-------------EVLTTVYKKPQKATHHEMQC 250
                    E +      R++L + R              E   T           E   
Sbjct: 63  QDCVERTLVEADEYAAAKRYILYRHRHAELRDLEGLVAGSEASGTDQGPVDAYVDREDWR 122

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
           +       Y  +G+   L   ++ D+ L  L + 
Sbjct: 123 VRENSNMDYSLQGLNIHLTERTIEDYWLEKLYSA 156


>gi|323452408|gb|EGB08282.1| hypothetical protein AURANDRAFT_8020 [Aureococcus anophagefferens]
          Length = 149

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 63/157 (40%), Gaps = 10/157 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G   +    ++   +++ C GL    +    +  +  + +YDG++  +L+   
Sbjct: 1   MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++  +  + P+++ + AR  +  L +    T     +K        L+     +  + 
Sbjct: 61  AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK--------LHKHMHPKTKKP 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
                    + +      +   + YERDF ++Y G +
Sbjct: 113 AALISDETYATVQKHKDAINAAIVYERDFEYDYFGFK 149


>gi|314968909|gb|EFT13007.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA1]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|314927073|gb|EFS90904.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA3]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|313829697|gb|EFS67411.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL063PA2]
 gi|315109656|gb|EFT81632.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL030PA2]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|313793665|gb|EFS41696.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA1]
 gi|313802977|gb|EFS44185.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA2]
 gi|313839393|gb|EFS77107.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL086PA1]
 gi|314964686|gb|EFT08786.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL082PA1]
 gi|315079322|gb|EFT51323.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL053PA2]
 gi|327455997|gb|EGF02652.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL092PA1]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|313763785|gb|EFS35149.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL013PA1]
 gi|313816896|gb|EFS54610.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL059PA1]
 gi|314916660|gb|EFS80491.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA4]
 gi|314918881|gb|EFS82712.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA1]
 gi|314920892|gb|EFS84723.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA3]
 gi|314932335|gb|EFS96166.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL067PA1]
 gi|314956610|gb|EFT00862.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL027PA1]
 gi|314959490|gb|EFT03592.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA1]
 gi|315100259|gb|EFT72235.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL059PA2]
 gi|315102584|gb|EFT74560.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL046PA1]
 gi|327458063|gb|EGF04718.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL083PA2]
 gi|328757606|gb|EGF71222.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL025PA2]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|289428068|ref|ZP_06429772.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J165]
 gi|289158951|gb|EFD07151.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J165]
 gi|313808389|gb|EFS46856.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA2]
 gi|313813745|gb|EFS51459.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL025PA1]
 gi|313818190|gb|EFS55904.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL046PA2]
 gi|313821048|gb|EFS58762.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA1]
 gi|313824074|gb|EFS61788.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL036PA2]
 gi|313827180|gb|EFS64894.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL063PA1]
 gi|314961895|gb|EFT05996.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA2]
 gi|314979622|gb|EFT23716.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL072PA2]
 gi|314988358|gb|EFT32449.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA2]
 gi|314990254|gb|EFT34345.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA3]
 gi|315082381|gb|EFT54357.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL078PA1]
 gi|315083828|gb|EFT55804.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL027PA2]
 gi|315087288|gb|EFT59264.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL002PA3]
 gi|315089706|gb|EFT61682.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL072PA1]
 gi|327326632|gb|EGE68420.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL096PA3]
 gi|327449550|gb|EGE96204.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL013PA2]
 gi|328757413|gb|EGF71029.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL020PA1]
 gi|332676520|gb|AEE73336.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes 266]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|289426093|ref|ZP_06427840.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK187]
 gi|289153636|gb|EFD02350.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK187]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|295131657|ref|YP_003582320.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK137]
 gi|291375496|gb|ADD99350.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes SK137]
 gi|313771801|gb|EFS37767.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL074PA1]
 gi|313810623|gb|EFS48337.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL083PA1]
 gi|313831666|gb|EFS69380.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL007PA1]
 gi|313834820|gb|EFS72534.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL056PA1]
 gi|314975016|gb|EFT19111.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL053PA1]
 gi|314977887|gb|EFT21981.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL045PA1]
 gi|314984705|gb|EFT28797.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL005PA1]
 gi|315095578|gb|EFT67554.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL038PA1]
 gi|327332895|gb|EGE74627.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL096PA2]
 gi|327447723|gb|EGE94377.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL043PA2]
 gi|327448598|gb|EGE95252.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL043PA1]
 gi|328762022|gb|EGF75528.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL099PA1]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|315094850|gb|EFT66826.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL060PA1]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|282854905|ref|ZP_06264239.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J139]
 gi|282582051|gb|EFB87434.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes J139]
 gi|314924386|gb|EFS88217.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL001PA1]
 gi|314967228|gb|EFT11327.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL082PA2]
 gi|314981635|gb|EFT25728.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA3]
 gi|315092274|gb|EFT64250.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL110PA4]
 gi|327328693|gb|EGE70453.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL103PA1]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|50843575|ref|YP_056802.1| anaerobic ribonucleoside triphosphate reductase [Propionibacterium
           acnes KPA171202]
 gi|50841177|gb|AAT83844.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes KPA171202]
 gi|315107774|gb|EFT79750.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL030PA1]
          Length = 780

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|20808264|ref|NP_623435.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516863|gb|AAM25039.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Thermoanaerobacter tengcongensis MB4]
          Length = 692

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD +KIS AI KAF AV       ++ + D +    EQ         
Sbjct: 4   EMKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFE------ 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               I  +E IQD VE  L++ G+ K  + Y+LYR++  D+R  +        +  +
Sbjct: 58  ---GIASVEQIQDVVEVFLIKRGYAKAAKAYILYRKQHQDIREFKKMVMDIEKMVDE 111



 Score = 42.1 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYK---NMYDGLSESD 197
           ++K++  DG  + F+  ++   + +A   + +     +  +  E  K    +++G++  +
Sbjct: 4   EMKVIKRDGREVKFDKTKISNAIYKAFKAVGEGEYEEALEIADEVTKHVEQVFEGIASVE 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
               ++     LI++   YAK    ++L   R++       K       +M   Y
Sbjct: 64  QIQDVVE--VFLIKR--GYAKAAKAYILY--RKQHQDIREFKKMVMDIEKMVDEY 112


>gi|307265926|ref|ZP_07547475.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919095|gb|EFN49320.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 692

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 18/162 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI+ AI KAF AV      +++++ D +   T+          
Sbjct: 4   AMKVIKRNGNEVEFDKSKIANAIYKAFKAVGEGEYEQAVQIADEV---TDYVEKHFE--- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +  +  I
Sbjct: 58  ---GIATVEQIQDIVEQYLIKYGHAKAAKAYILYRKQHQDIREFKKMFMDIERMVDE-YI 113

Query: 148 MMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
              D  +       ++ + L   +     A   L  +    V
Sbjct: 114 GKQDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|327455910|gb|EGF02565.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA3]
 gi|328757223|gb|EGF70839.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL087PA1]
          Length = 780

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFAPAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|317052449|ref|YP_004113565.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurispirillum
           indicum S5]
 gi|316947533|gb|ADU67009.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurispirillum
           indicum S5]
          Length = 688

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 7/114 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  +I+ AI KA  +V G         ++I   L+ Q +  L+      
Sbjct: 5   VMKRDGRFVPFDQERIATAIFKAARSVGG-------SDRNIASALSLQVLRALVDQYGQY 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               +E +QD VE  L++ GH K  + Y++YR +R+D+RA     +    I   
Sbjct: 58  GSCTVEQVQDCVEKVLIEGGHAKTAKAYIIYRHQRADMRAMTESFEGLESIVES 111


>gi|332295915|ref|YP_004437838.1| anaerobic ribonucleoside-triphosphate reductase [Thermodesulfobium
           narugense DSM 14796]
 gi|332179018|gb|AEE14707.1| anaerobic ribonucleoside-triphosphate reductase [Thermodesulfobium
           narugense DSM 14796]
          Length = 758

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  FD  +I RAI KAF AV     +         K L  +   +L +  K  
Sbjct: 67  VKKRDGRVVPFDIFRIERAIAKAFKAVGEHLGAE--------KELAARVSKKLYRQYKEQ 118

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +V IE IQD VE  L+++G  K+ + Y+LYR +R + R 
Sbjct: 119 EVVDIERIQDVVEEVLIENGFAKVAKAYILYRRKRQEARE 158



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSSKIVLSETYKNMYDGLSESD-LETAL 202
            +   DG ++ F+  R+E  + +A    G    + K + +   K +Y    E + ++   
Sbjct: 66  YVKKRDGRVVPFDIFRIERAIAKAFKAVGEHLGAEKELAARVSKKLYRQYKEQEVVDIER 125

Query: 203 IFSSRTLIEKEPNYAKVT-ARFLLEKLRREVLTTVY 237
           I      +  E  +AKV  A  L  + R+E    + 
Sbjct: 126 IQDVVEEVLIENGFAKVAKAYILYRRKRQEARENLS 161


>gi|48429400|gb|AAT42468.1| NrdA [Escherichia coli B]
          Length = 182

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 38/214 (17%)

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                Y+   A  +  ++ E I ++ + AS ELA+E+GA   F  + + +G+ PID+   
Sbjct: 2   KHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKK 61

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
             +       N      W+ L++ +KT G+RNS   A+ P+ T + I   +  I+P    
Sbjct: 62  DLDTIA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGY 117

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           + +K++  G    V                                    + L   +   
Sbjct: 118 VSIKASKDGILRQVVPDY--------------------------------EHLHDAYELL 145

Query: 849 FEIDPMW-LIESASRRQKWIDQAQSLNLYLDEPS 881
           +E+      ++     QK+IDQ+ S N    +PS
Sbjct: 146 WEMPGNDGYLQLVGIMQKFIDQSISANTNY-DPS 178


>gi|289578846|ref|YP_003477473.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           italicus Ab9]
 gi|289528559|gb|ADD02911.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           italicus Ab9]
          Length = 692

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++   +I   +T      L    
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYKQAV---EIADEITNYVEKNLE--- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +  +  I
Sbjct: 58  ---GIASVEQIQDIVEQYLIKRGHAKAAKAYILYRKQHQDIREFKKVFMDIEKMVDE-YI 113

Query: 148 MMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
              D  +       ++ + L   +     A   L  +    V
Sbjct: 114 GKLDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|288817532|ref|YP_003431879.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786931|dbj|BAI68678.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751135|gb|ADO44618.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobacter
           thermophilus TK-6]
          Length = 701

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  FD S+I RA+ KAF AV          + ++++++  + ++   Q     
Sbjct: 21  VVKRDGILVPFDRSRIQRAMFKAFKAV--GEFVEQSILDELVEDVVTKVLSLGKQR---- 74

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             VH+E+IQD VE +L+  G  K  + Y+LYR+ R ++R   +       +  +  I   
Sbjct: 75  --VHVEEIQDLVEETLILHGFAKTAKAYILYRKRREELRDISNAIVDAERVVQE-YIHKQ 131

Query: 151 DGTLIS 156
           D  +  
Sbjct: 132 DWRVQE 137


>gi|297545066|ref|YP_003677368.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842841|gb|ADH61357.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 692

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD SKI  AI KAF AV      +++ + D + N  E+ +        
Sbjct: 5   MKVIKRNGKEVEFDKSKIVNAIYKAFKAVGEGEYKQAVEIADEVTNYVEKNLE------- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +  +  I 
Sbjct: 58  --GIASVEQIQDIVEQYLIKRGHAKAAKAYILYRKQHQDIREFKKMFMDIEKMVDE-YIG 114

Query: 149 MDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
             D  +       ++ + L   +     A   L  +    V
Sbjct: 115 KLDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|70915525|ref|XP_732202.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56502850|emb|CAH78399.1| hypothetical protein PC001041.02.0 [Plasmodium chabaudi chabaudi]
          Length = 182

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 101/166 (60%), Gaps = 7/166 (4%)

Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322
           A L+ + + DF       L  ++ Y RDF ++Y G + L   Y L IN   IE PQ   M
Sbjct: 20  ASLISKEVYDFIMEHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLM 79

Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381
           RV++G+ + +    ++A+E Y+L+S  +F  +TPTLFNSGT  PQ+SSCFL ++  D + 
Sbjct: 80  RVSIGIHIDD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKSDSIE 136

Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           GIF  L++ A+++K +GG+G     +R   ++I GTNG S G++P 
Sbjct: 137 GIFETLKQCALISKTAGGIGVAVQDIRAQNSYIRGTNGISNGLVPM 182


>gi|291545180|emb|CBL18289.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ruminococcus sp. 18P13]
          Length = 774

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 17/184 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F+  KI+ AI +A  +V G          +    +  +    + +   
Sbjct: 3   IHIIKRDGRKVPFNMEKIANAIFRAAQSVGGTN-------FEEAMQIAARVCALVEEKYP 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +  +E +QD VE +L++ GH    + Y+LYR ER+  R  +++  +           
Sbjct: 56  -GQVPTVEQVQDLVEKTLIEEGHAATAKAYILYRYERTRSREMKTNLMTVLNELTFNPAK 114

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL-------SETYKNMYDGLSESDLETA 201
             D    + N      +      G   VS+K           E   ++   +   DL+  
Sbjct: 115 DSDIKRENANIDGDTAMGTMLKYG--SVSAKEFYEMYVLEPQEAKAHINGDIHIHDLDFL 172

Query: 202 LIFS 205
            + +
Sbjct: 173 TLTT 176


>gi|9845337|ref|NP_064151.1| pR45 [Murid herpesvirus 2]
 gi|9800270|gb|AAF99144.1|AF232689_37 pR45 [rat cytomegalovirus Maastricht]
          Length = 1064

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 101/565 (17%), Positives = 180/565 (31%), Gaps = 80/565 (14%)

Query: 404  WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
                  +   +    G   G++    +   +     +   +   V        +    F+
Sbjct: 514  LANGVSVSVQLSDLLGDVAGILKSFGLFCASLRDHRRFDTKLRVVVDLWSVDLVYAFSFI 573

Query: 464  DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA---GWTLFSPDEVSDLHDLYGKEFEI 520
                    + R   ++  A  +P  F +R  +      W +F   E   L  +  K F  
Sbjct: 574  ------LGEGRAYPELLYAVNVPQFFWERYVEEGASGRWQVFQKSECKSLCRVDEKGFRT 627

Query: 521  AYENYERQAD---RGEIKVFRKISAV---------ALWRKMLTMLFETGHPWITFKD--- 565
            AYE  E + +        V R + A            +     M+ ETG   +   +   
Sbjct: 628  AYERLELEGNGLSLSPWWVVRHLDACVALGNTAVVYPYNLKSAMVGETGRLLLCGPELSL 687

Query: 566  PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625
             CN          +   ++C E  L   S            +        F +  L   +
Sbjct: 688  VCNSFLGVFPENKI---DVCLENCLLEGSGADDAAAATEGEVPVLGHEVFFSFRSLRVLV 744

Query: 626  RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684
            R AV + + ++D +    +  A      +R + L ++GF + L  L + Y    +V +  
Sbjct: 745  RDAVVIGNVLMDAVIRDNVFGAGDVMCLYRPLQLRVLGFHAVLGRLGLLYTDDASVLLGR 804

Query: 685  ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743
               EF+ + A+ ASV+L       +  F  SL+  G    D      +    L       
Sbjct: 805  RIAEFVHYAAVRASVDLCVHGAEPFPKFSRSLFATGRLYPDLFDDPLQETSSLPAGH--- 861

Query: 744  LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV---------KSN 794
              W +L++ V   G+RNS  +        AN+ G +  + P   NL +         +  
Sbjct: 862  --WAQLREDVVRYGVRNSAFVCGGLGEESANVAGTTPGMFPRAYNLSLEPSPLLAAPRDR 919

Query: 795  MSGD------------------------------FTVVNSFLVNELKQRDLWDEAMISDL 824
              G+                                VVN +L    + R      +   +
Sbjct: 920  CLGEALRVAEDLRLDLPNASDRSLLALVGNQRVYLPVVNRYLAEIPRSR----AVLAVRM 975

Query: 825  KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883
             Y  G    +E   +D   +  T +      +++ A  RQ ++DQ Q L L+L    S  
Sbjct: 976  GYAAGLYAGVEEEDEDRASL-ETGWMTSQEAVLKMAVDRQPYVDQGQGLPLFLGSGRSMV 1034

Query: 884  KLDFIYRQAWLMGLK-TTYYLRSRS 907
             +    R+A   GL    Y  R  S
Sbjct: 1035 DVARHLRRAGAAGLGIGLYKCRVAS 1059


>gi|293356092|ref|XP_002728828.1| PREDICTED: ribonucleotide reductase M1 [Rattus norvegicus]
          Length = 151

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 10/157 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  +L+T  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
             ++ TL  K P+YA + AR  +  L +E         +K     M+ LY          
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299
                     ++      L + + Y+RDF++ Y G +
Sbjct: 113 SPMVASSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFK 149


>gi|167039791|ref|YP_001662776.1| anaerobic ribonucleoside triphosphate reductase [Thermoanaerobacter
           sp. X514]
 gi|300914964|ref|ZP_07132279.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X561]
 gi|307724884|ref|YP_003904635.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X513]
 gi|166854031|gb|ABY92440.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X514]
 gi|300888688|gb|EFK83835.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X561]
 gi|307581945|gb|ADN55344.1| anaerobic ribonucleoside-triphosphate reductase [Thermoanaerobacter
           sp. X513]
          Length = 692

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    FD SKI  AI KAF AV      +++++ D +   T+          
Sbjct: 4   AMKVIKRNGNEVEFDKSKIVNAIYKAFKAVGEGEYEQAVQIADEV---TDYVEKHFE--- 57

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               I  +E IQD VE  L++ GH K  + Y+LYR++  D+R  +        +  +  I
Sbjct: 58  ---GIATVEQIQDIVEQYLIKYGHAKAAKAYILYRKQHQDIREFKKMFMDIERMVDE-YI 113

Query: 148 MMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
              D  +       ++ + L   +     A   L  +    V
Sbjct: 114 GKQDWRVNENSNMSYSLQGLNNHISSTITAHYWLNKIYPPEV 155


>gi|239623883|ref|ZP_04666914.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521914|gb|EEQ61780.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 688

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   KIS AI KAF A             DII  L+ +  +   +  +  
Sbjct: 4   VVKRDGETVEFQLEKISSAIKKAFKATGK------SYTDDIIDLLSIRVTSDFQRKMRDG 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE  L +SG+  + + Y+LYR++R  +R  +  +     +     + ++
Sbjct: 58  R-ISVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRNLEKTTLDYKDVVDN-YVKVE 115

Query: 151 D 151
           D
Sbjct: 116 D 116



 Score = 43.7 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 23/126 (18%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEA--------CSGLQDVSSKIVLSETYKNMYDG-LSESD 197
           ++  DG  + F  +++   +++A           + D+ S  V S+  + M DG +S  D
Sbjct: 4   VVKRDGETVEFQLEKISSAIKKAFKATGKSYTDDIIDLLSIRVTSDFQRKMRDGRISVED 63

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           ++      S   + +E  Y  V   ++L + +RE +  + K             Y +   
Sbjct: 64  IQD-----SVEKVLEESGYTDVAKAYILYRKQREKIRNLEKTTLD---------YKDVVD 109

Query: 258 RYIEEG 263
            Y++  
Sbjct: 110 NYVKVE 115


>gi|327335299|gb|EGE77009.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL097PA1]
          Length = 780

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGMGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDGVAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|315104645|gb|EFT76621.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL050PA2]
          Length = 780

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 8/157 (5%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P       ++     + KR+G V  FD +KI  A+ KAF+A     +            +
Sbjct: 7   PDDQTISQQRAVPTSIRKRDGRVIRFDSTKIVEAVRKAFVACGIGTSELHAS------EV 60

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             + ++RL +         +E IQD VE +LM  GH    + Y+LYR+ R+  R  QS  
Sbjct: 61  ALEVMSRLSEM--GEETPDVETIQDLVEKTLMDQGHDDAAKAYILYRQRRTVARDQQSAL 118

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172
                          D    + N      +      G
Sbjct: 119 MRTLREITFASAEEADAKRENANVDGNSAMGSMLRYG 155


>gi|62996796|gb|AAY24448.1| ribonucleoside-diphosphate reductase large chain [Popillia japonica
           iridescent virus]
          Length = 225

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 110/249 (44%), Gaps = 32/249 (12%)

Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478
             S G +P L   +   +A  Q G R+G+   YL+  H ++  FL++RK+TGD   R  +
Sbjct: 1   NTSCGPMPHLHTYDSCCLAYKQDGVRRGSYAMYLDISHPEIIPFLEMRKSTGDHNIRCLN 60

Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538
           ++    I D FM+ + +                       E   ++     D    +V  
Sbjct: 61  LHHCINITDKFMELIER--------------------CTKEKNVDDTWNLIDPHSKEVTD 100

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595
           KISA  LW+++L    +TG P+I F D CN       V     +  SNLC E+ L + S 
Sbjct: 101 KISAKELWQRILETRLKTGEPYICFIDTCNKGMYDFQVEKGLSIKQSNLCVEVVLPTDST 160

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT----IEKAKKSNH 651
            TAVC L S+NL  +       +      I+  + +LDN + I        IE+A  S  
Sbjct: 161 RTAVCCLSSLNLEHYDE-----WKDDPLFIKDVMEMLDNALTIFIENAPKRIERAVNSAK 215

Query: 652 THRAIGLGL 660
             R+IG+G+
Sbjct: 216 KGRSIGIGV 224


>gi|312114579|ref|YP_004012175.1| anaerobic ribonucleoside-triphosphate reductase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219708|gb|ADP71076.1| anaerobic ribonucleoside-triphosphate reductase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 685

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 13  DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
            + P            + ++KR+G +  FD +KI  A+ +A  A  G   +    +    
Sbjct: 2   SSSPDSTAVVSAARLPLSIVKRSGALAPFDAAKIRSAVERAGRAT-GDFDATEAHL---- 56

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             L  Q V  +     S    HIE+IQD VE  L+ + H    R Y++YRE+R+ +RA +
Sbjct: 57  --LAIQAVKVIAHRFAS-RSPHIEEIQDIVEQVLISANHFATARAYIVYREQRARLRADR 113

Query: 133 SHSKSDAPIAPK 144
             +        +
Sbjct: 114 HAAIDVESSMNE 125


>gi|316956309|gb|EFV46789.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 178

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339
            L + + Y+RDF++ Y G + L   Y L ING   E PQ   MRVA+G+     +    A
Sbjct: 1   RLNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAIGIH---EDDIDAA 57

Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSG 398
           +E YNL+S   F  ++PTLFN+GT  PQLSSCFL T+  D + GI+  L+E A+++K +G
Sbjct: 58  IETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYDTLKECAIISKSAG 117

Query: 399 GLGNDWTPVRGLGAHIH 415
           G+G +   +R  G +I 
Sbjct: 118 GIGLNVHCIRASGTYIA 134


>gi|258514358|ref|YP_003190580.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778063|gb|ACV61957.1| anaerobic ribonucleoside-triphosphate reductase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 1197

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 14/171 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G   SFD  KI+ AI +A  +V G         + +   LT + +  +     + 
Sbjct: 5   IKKRDGREVSFDDKKITDAIFRAARSVGG-------EDRQLAMELTIEVLKMIKAK-YNG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +ED+QD VE  L+++GH +  + Y+LYR+ R+ +R A+     DA     ++   +
Sbjct: 57  NAFGVEDVQDIVEKVLIENGHARTAKAYILYRDRRTRMREAKGEL-MDAVEEILVETSKE 115

Query: 151 DGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYDGLSESDLE 199
           +  + +  S ++  I   A     L  +    +     +     +   DL+
Sbjct: 116 NANVSNSPSAKMLQIASAASKKYYLTRLIPDELSQAHTRG---DIHIHDLD 163


>gi|167630139|ref|YP_001680638.1| anaerobic ribonucleoside-triphosphate reductase [Heliobacterium
           modesticaldum Ice1]
 gi|167592879|gb|ABZ84627.1| anaerobic ribonucleoside-triphosphate reductase [Heliobacterium
           modesticaldum Ice1]
          Length = 712

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 108/296 (36%), Gaps = 30/296 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  F  SKI+ AI +A  AV G+          +   LT   +  L     +
Sbjct: 4   QIRKRDGRIVEFHESKITDAIFRAAKAVGGEDK-------QMAMELTLAVLKALKGR-YN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +ED+QD VE  L+++GH +  + Y++YR  R+ +R A+S       +   LK   
Sbjct: 56  GNVFSVEDVQDMVEKVLIENGHARTAKAYIIYRNSRTRIRDAKSDLM--DAVQEILKETN 113

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLE-------TAL 202
            +   +S +     + + E  S    ++  I   E   +    +   DL           
Sbjct: 114 RENANVSNSPSAKVLQISEVASVNYYLNRVIPEDEAVAHREGDIYIHDLAWYGKTLTCLQ 173

Query: 203 IFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           I   R L E       Y +            +    +     ++  ++M     + F  +
Sbjct: 174 IPLGRLLSEGFDNGHGYIRPPKSI-------KTAAALAAIILQSNQNDMHG--GQSFAYF 224

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERD-FAFEYLGLQILYDRYFLHINGSRI 314
             +         +  + DL      L+ E D    + L ++ + +  +  + G   
Sbjct: 225 DRDMAPYVKAEYARQEKDLRAALAALEIEVDEEKLQALVMERVENETYQAMEGFIY 280


>gi|293402281|ref|ZP_06646419.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304388|gb|EFE45639.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 790

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +VIKR+G VT FD +KI+ AI +AF +V+ +          +I  L  +  +      K
Sbjct: 2   YKVIKRDGKVTDFDIAKITIAITQAFESVQRQYHPS------VIDMLALRVTSDFEPKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               +H+EDIQD VE  L+Q+ +  + + Y+LYR++R  +R  +S       +     + 
Sbjct: 56  EER-IHVEDIQDSVEDVLIQADYADVAKSYILYRKQREKIRNMRSTILDYKDLVDS-YVK 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET-YKNMYD 191
             D  +      +    V  +  GL   +S  + +      +YD
Sbjct: 114 ATDWRV------KENSTVTYSVGGLILNNSGAITANYWLSEIYD 151



 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ----DVSSKIVLSETYKNMYDGLSESDLETA 201
           K++  DG +  F+  ++ + + +A   +Q         ++      +    + E  +   
Sbjct: 3   KVIKRDGKVTDFDIAKITIAITQAFESVQRQYHPSVIDMLALRVTSDFEPKIKEERIHVE 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            I  S   +  + +YA V   ++L   R++       +     + ++   Y + 
Sbjct: 63  DIQDSVEDVLIQADYADVAKSYILY--RKQREKIRNMRSTILDYKDLVDSYVKA 114


>gi|313836260|gb|EFS73974.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA2]
 gi|314928911|gb|EFS92742.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL044PA1]
 gi|314971126|gb|EFT15224.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           acnes HL037PA3]
 gi|328906527|gb|EGG26302.1| anaerobic ribonucleoside-triphosphate reductase [Propionibacterium
           sp. P08]
          Length = 780

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G V  FD +KI  A+ KAF+A             D  +    +    ++      
Sbjct: 22  IRKRDGRVIRFDSTKIVEAVRKAFVACGI----------DTTERHAAEVALEVMSRLSEM 71

Query: 91  L--IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE +LM  GH  + + Y+LYR+ R+  R  QS               
Sbjct: 72  GEETPDVEAIQDLVEKTLMNQGHDDVAKAYILYRQRRTVARDQQSALMRTLREITFASAE 131

Query: 149 MDDGTLISFNSKRLEMIVEEACSG 172
             D    + N      +      G
Sbjct: 132 EADAKRENANVDGNSAMGSMLRYG 155


>gi|134298561|ref|YP_001112057.1| anaerobic ribonucleoside triphosphate reductase [Desulfotomaculum
           reducens MI-1]
 gi|134051261|gb|ABO49232.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Desulfotomaculum reducens MI-1]
          Length = 676

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+G   +F+ +KI+ AI +A  AV G         +     LT   +  L +   +
Sbjct: 4   KVRKRDGREVAFNETKITEAIFRAAKAVGG-------EDRQTAMELTLDVLKMLKKQ-YN 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             +  +E++QD VE  L++SGH +  + Y+LYR +R+ +R A+S       
Sbjct: 56  GNLFGVEEVQDMVEKVLIESGHARTAKAYILYRAQRTRLRDARSDLMDAVE 106


>gi|51874250|ref|YP_073768.1| ribonucleotide reductase subunit 1 [Human herpesvirus 7]
 gi|1710387|sp|P50641|RIR1_HHV7J RecName: Full=Ribonucleoside-diphosphate reductase large
           subunit-like protein U28
 gi|1139630|gb|AAC54690.1| ribonucleotide reductase, large subunit [Human herpesvirus 7]
 gi|2746258|gb|AAC40742.1| U28 [Human herpesvirus 7]
          Length = 806

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 114/716 (15%), Positives = 229/716 (31%), Gaps = 74/716 (10%)

Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY-LANDLKYER 289
            +L   Y K   A+  +   L  E      +E ++           +L   L   +   R
Sbjct: 83  RLLGQFYLKTNSASEFDSISLILESENILQKELIEFV----RDSKVELEKILQAAIHVWR 138

Query: 290 -DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348
             F+   L      D      NG   E     F+R+++ LA +  + E     F  +   
Sbjct: 139 AKFSPGVLAASRFLDEISNSFNG-IEENIPTIFLRISVTLASQIKKIEYLQKSF--VSHK 195

Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408
              +     L                 +  +   +F  +  N         L  +     
Sbjct: 196 CPLVEEILILLYKRVCMLPFPCMSNLGLVSEKKSVFDTVFHNVSNFSLEDFLDINSGFFL 255

Query: 409 GLGAHIHGTNG----KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
               +    +             +++       V +   +   +  YLE WH+ +  +LD
Sbjct: 256 PAMLNGSYVSVNLTRYHYEAESLMELLLSQLQIVEKDTNKTTGLTIYLEIWHLSLLMWLD 315

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVT-QNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
             +      +    +     +P++FM+R+  +N+ W++F      +L      +F   Y 
Sbjct: 316 FCEILPTTVQ----VKFCLILPEIFMERLKTENSYWSVFHKALAINLGLYDESDFTSKYL 371

Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583
             ER A+        +I    L   +   L   G     F+   +  S    +      N
Sbjct: 372 ECERTAEHA------RIKTETLLDNICRCL-RRGQMGFIFRKNIHKYSMLPQIASYCLGN 424

Query: 584 ----LCTEITLNS----------SSEETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTA 628
               +  E  LN+            E  +       N+      +  F+  K+  T+   
Sbjct: 425 SMDVIPFEYGLNTAFRIALNLSYFVENVSEEQKSHTNIDMFHYRDKIFNLKKMRKTVTEL 484

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           V + + VID      +         R++ + + G  SAL  +++P+ S    ++     E
Sbjct: 485 VLIGNAVIDYALENRDFLMDGIVNARSLAICVTGLHSALMSMNLPFNSQLGCQLYRIVCE 544

Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747
            I + ++  S+   ++     S F+ S + QG+   D    +      +         W 
Sbjct: 545 NIYYSSVRTSMNCCKKGAEPCSFFQRSKYAQGILHCDLYDNVEYTLPNVL--------WT 596

Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807
            L+  +K  G+RN   ++ +  +   ++   SQS  P   N  +K + S      N    
Sbjct: 597 NLRSDIKKYGLRNLTFVSGSAMSKEFDLLNCSQSFCPIEGNKILKRS-SIKVLHPNPVFH 655

Query: 808 NELK-------------QRDLWDEAMISDLKY-----HDGSIGNIERIPDDLKK---IHA 846
           ++L                 L+     + L+Y     +D S  N     ++  +   I  
Sbjct: 656 SDLSVYSTELQTLYIPVYNGLFLNRFKNHLEYLSSVNYDVSKVNKNLFSEEEMQEMTIFL 715

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901
            AF+     ++        + D  Q  N++    + + +  I    +  G KT  Y
Sbjct: 716 NAFDYSVNEMLNMYVGALPFTDHGQ-ANVFFINKT-ENMRDILVCLYQNGFKTGIY 769


>gi|268609355|ref|ZP_06143082.1| anaerobic ribonucleoside triphosphate reductase [Ruminococcus
           flavefaciens FD-1]
          Length = 772

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F+  KI+ AI KA  A  G          +   ++  +      + N 
Sbjct: 3   IHIIKRDGRKVPFNIEKIANAIFKAAQAKGGT-------DFNAAMDVAVEVCKLYEEQNP 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                 +E+IQD VE +L++ GH K  + Y+LYR ER+  R  +
Sbjct: 56  -GKTPTVEEIQDLVEKTLIEKGHAKTAKAYILYRYERTRSREMK 98



 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 13/77 (16%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACS---GLQDVSSKIVLSETYKNMYDGL------SE 195
           + I+  DG  + FN +++   + +A     G    ++  V  E  K +Y+        + 
Sbjct: 3   IHIIKRDGRKVPFNIEKIANAIFKAAQAKGGTDFNAAMDVAVEVCK-LYEEQNPGKTPTV 61

Query: 196 SDLETALIFSSRTLIEK 212
            +++  +  +   LIEK
Sbjct: 62  EEIQDLVEKT---LIEK 75


>gi|323704571|ref|ZP_08116149.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536033|gb|EGB25806.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 692

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 18/163 (11%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           K ++VIKRNG    FD +KI+ A+ KAF AV     + +++V + +   TE         
Sbjct: 3   KNMKVIKRNGKEEEFDRAKIANAVNKAFEAVGEGEYNDALKVAEEV---TEYIGNNFE-- 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                   +E+IQD VE  L++ G  K  + Y+LYR++  D+R  ++       +  +  
Sbjct: 58  ----GCASVEEIQDIVEQFLIKHGFAKAAKAYILYRKQHQDIREFKNMFMDIEKMVDE-Y 112

Query: 147 IMMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
           I   D  +       ++ + L   +     A   L  +  K V
Sbjct: 113 IGKLDWRVNENSNMSYSLQGLNNHIASTITANYWLNKIYPKEV 155


>gi|158321089|ref|YP_001513596.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
 gi|158141288|gb|ABW19600.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
          Length = 710

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KRNG +  F+  KI  AI  A  +V G          ++      +    +L     
Sbjct: 5   KVQKRNGEIVDFNGGKIKEAIFAAAKSVGGSN--------EVQATKLSKISIEILNETYG 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +EDIQD VE  L++ GH K  + Y+LYR++  ++R  ++       +  +  + +
Sbjct: 57  TGVPSVEDIQDIVEKVLIEEGHAKTAKAYILYRKKHEEIREIKNLFMDAEKMIEE-YVNL 115

Query: 150 DD 151
           +D
Sbjct: 116 ED 117


>gi|301331665|gb|ADK70787.1| U28 [Elephant endotheliotropic herpesvirus 1A]
 gi|301331725|gb|ADK70826.1| U28 [Elephant endotheliotropic herpesvirus 1A]
 gi|301331785|gb|ADK70863.1| U28 [Elephant endotheliotropic herpesvirus 1B]
 gi|301331844|gb|ADK70893.1| U28 [Elephant endotheliotropic herpesvirus 1B]
          Length = 185

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 12/189 (6%)

Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826
            PT+  + +  VS++  P++ N + K     +  V N  L  E K  + +   +  ++  
Sbjct: 1   MPTSGTSQVSSVSEAFYPTFSNFHSKITTGVEVLVSNKELQREFKMYNNYLSNIDWEVTK 60

Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSG-K 883
              +          +  I+  AFE D   LI+  + R  ++D +QS++L++  ++ +G +
Sbjct: 61  ASETYFTEPEWDKLM--IYKNAFEYDQEDLIDMCADRAPFVDHSQSMSLFVREEDITGCR 118

Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            +  + R A   GLKT  YYLR +      ++ L+ ++ K +   V     S+ S  +  
Sbjct: 119 HIYSLIRHAHKRGLKTGMYYLRIKK-----QARLRDLEKKSDVFGVPLCCPSSTSALVKK 173

Query: 943 SC-TSDTEC 950
           SC  SD  C
Sbjct: 174 SCPESDNTC 182


>gi|312144556|ref|YP_003996002.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium sp.
           'sapolanicus']
 gi|311905207|gb|ADQ15648.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium sp.
           'sapolanicus']
          Length = 1076

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG    F+  KI  A++KA  AVE                +  + ++ L    K  
Sbjct: 6   VKKRNGKKVDFNSDKIKAAVIKAAEAVESNNDKIG-------DEICSEVISYLKIFFKDG 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            IV +E IQD VE  L++ G+  + + Y+LYRE+ S +R  +        I  
Sbjct: 59  GIVEVEQIQDLVEKVLIEKGYADVAKAYILYREQHSKLRDTKKLFADAVNIMD 111



 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 23/176 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVS---SKIVLSETYKNM----YDG--LSES 196
            +   +G  + FNS +++  V +A   ++  +      + SE    +     DG  +   
Sbjct: 5   YVKKRNGKKVDFNSDKIKAAVIKAAEAVESNNDKIGDEICSEVISYLKIFFKDGGIVEVE 64

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR---------EVLTTVYKKPQKATHHE 247
            ++  +          +   A +  R    KLR           ++     +     +  
Sbjct: 65  QIQDLVEKVLIEKGYADVAKAYILYREQHSKLRDTKKLFADAVNIMDNYLDRSDWKVNEN 124

Query: 248 MQCLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302
               Y  +    +I   V  +   + +   ++  L      + D     LG   +Y
Sbjct: 125 SNMSYSLQGLNNFIASEVTGQYWLQQIYSDEIEKL----HKDGDLHVHDLGNLSVY 176


>gi|2760640|dbj|BAA24243.1| P25 [Leucania separata nuclear polyhedrosis virus]
          Length = 222

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 370 SCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428
           SCFL T+  D + GI+  L + AM++K+ GG+G +   VRG  + I  TNG + G++P L
Sbjct: 19  SCFLLTMESDSIRGIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPML 78

Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488
           +V N+    V +    K      L     D+ + L +R+N G +  +  D+  A W+PD+
Sbjct: 79  RVFNNMVRHVIKVASEKAPKQCTLNRGIGDIMDVLHMRRNIGSEDTKARDLMNALWVPDI 138

Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548
           FMKRV +N  W+L  P+E   L+D YG +FE  Y++YE +    E     ++ AV L R 
Sbjct: 139 FMKRVEENGIWSLMCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRN 193

Query: 549 MLTMLFETGH 558
           ++ +  ET H
Sbjct: 194 IIEIQAETAH 203


>gi|309775960|ref|ZP_07670952.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916242|gb|EFP61990.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 792

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVIKR+G ++ FD +KIS AI KAF AVE +          II  L  +  +      K
Sbjct: 2   YQVIKRDGKISEFDIAKISNAITKAFEAVERQYHPS------IIDMLALRVTSDFEPKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   + +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S       +     + 
Sbjct: 56  NDR-IQVEDIQDSVESILIQSGYGDVAKCYILYRKQREKIRNMKSTILDYKELVDS-YVK 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET-YKNMYD 191
             D  +      +    V  +  GL   +S  + +      +YD
Sbjct: 114 ATDWRV------KENSTVTYSVGGLILNNSGAITANYWLSEIYD 151


>gi|291557671|emb|CBL34788.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 787

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-QHNK 88
           ++ KR+G    F+  KI+ AI KA  AV G               + E+    L    NK
Sbjct: 4   KIQKRDGRTVPFNIEKIADAIYKAARAVGGN-------DYQEAGEMAEKVCDYLEANVNK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR  
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVREM 99


>gi|167750480|ref|ZP_02422607.1| hypothetical protein EUBSIR_01456 [Eubacterium siraeum DSM 15702]
 gi|167656631|gb|EDS00761.1| hypothetical protein EUBSIR_01456 [Eubacterium siraeum DSM 15702]
          Length = 787

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-QHNK 88
           ++ KR+G    F+  KI+ AI KA  AV G               + E+    L    NK
Sbjct: 4   KIQKRDGRTVPFNIEKIADAIYKAARAVGGN-------DYQEAGEMAEKVCDYLEANVNK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR  
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVREM 99


>gi|291530822|emb|CBK96407.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Eubacterium siraeum 70/3]
          Length = 787

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-QHNK 88
           ++ KR+G    F+  KI+ AI KA  AV G               + E+    L    NK
Sbjct: 4   KIQKRDGRTVPFNIEKIADAIYKAARAVGGN-------DYQEAGEMAEKVCDYLEANVNK 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  +  +E++QD VE  L++SGH K  + Y+LYR +R+ VR  
Sbjct: 57  TGELPTVEEVQDAVEKVLVESGHAKTAKAYILYRADRTRVREM 99


>gi|310829195|ref|YP_003961552.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           limosum KIST612]
 gi|308740929|gb|ADO38589.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           limosum KIST612]
          Length = 774

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 121/397 (30%), Gaps = 29/397 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +IKRNG V  FD  KIS AI KA ++V G+        +  I+ LT    +        
Sbjct: 4   NIIKRNGTVAPFDTRKISSAIYKANISVNGESM-----TEKHIEFLTNVVTSAAEPLV-- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E IQD VE +L+++ + K  + Y+LYR E +  R A+S                
Sbjct: 57  --CPTVEQIQDIVEETLIKADYAKTAKAYILYRAEHAKTRQAESDLMEIYKDLTFRYAED 114

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            D    + N      +      G +        S+ + + Y  +   ++  A I  S  +
Sbjct: 115 ADLKRENANIDSDTAMGTMLKYGSEG-------SKYFIDNY--ILPREIADAHI--SGDI 163

Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269
              + ++  +T       L +                     Y    C  I+        
Sbjct: 164 HIHDKDFYMLTETCCQIDLLKLFKGGFSTGHGYLREPNDIRSYSALACIAIQANQNEMHG 223

Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
            +S+ +FD       +K      F  L  + L +      +G   E        VA    
Sbjct: 224 GQSIPNFDYAMAPGIVKT-----FSKLYRKALIND-LSVCSGQDRETVTEM---VAFACE 274

Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
             E       +E +    S  F  S+         H       L    +  Y    A   
Sbjct: 275 KIEAPITLDTLEAFGRELSIFFNGSSFDAQMINKTHDHACKTALRESEEATYQAMEAFIH 334

Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           N        G    ++ V              + ++ 
Sbjct: 335 NLNTMNSRAGAQVPFSSVNYGTDTSSEGRMVVKNLLK 371


>gi|188584769|ref|YP_001916314.1| anaerobic ribonucleoside-triphosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349456|gb|ACB83726.1| anaerobic ribonucleoside-triphosphate reductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 736

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 18/180 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G    FDPSKI+ AI KA  A++            +  +LT Q + +L +H   
Sbjct: 18  KVVKRDGREQPFDPSKITNAIKKALKAIDK-------EDHSLALSLTYQVINKLTKHGVD 70

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM- 148
                +  IQ+ VE SLM +GH+++ R YV+YR +R  +R A +       +   LK++ 
Sbjct: 71  K--PTVPQIQEMVENSLMDTGHYEVARAYVIYRNDRDRIREADTKL-----MKELLKVLE 123

Query: 149 MDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETALIFS 205
             D    + N    +  +++     +++V         +   +    +   D + A I +
Sbjct: 124 TRDQENANVNGDAPMGKMLKGGSEAMKEVYLNHFAKNEHSQAHRNGYIHIHDADFAAIGT 183



 Score = 43.7 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 56/171 (32%), Gaps = 19/171 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK-------IVLSETYKNMYDGLSESDL 198
           K++  DG    F+  ++   +++A   +              V+++  K+  D  +   +
Sbjct: 18  KVVKRDGREQPFDPSKITNAIKKALKAIDKEDHSLALSLTYQVINKLTKHGVDKPTVPQI 77

Query: 199 ETAL---------IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           +  +            +R  +    +  ++  R    KL +E+L  +  + Q+  +    
Sbjct: 78  QEMVENSLMDTGHYEVARAYVIYRNDRDRI--READTKLMKELLKVLETRDQENANVNGD 135

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
               +      E   +  L H +  +    +    +    D  F  +G   
Sbjct: 136 APMGKMLKGGSEAMKEVYLNHFAKNEHSQAHRNGYIHIH-DADFAAIGTTT 185


>gi|95931058|ref|ZP_01313785.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132867|gb|EAT14539.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
          Length = 662

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 7/114 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G + +F+  KIS AI KA  AV G       +     + +T Q V  L    K  
Sbjct: 5   IRKRDGRLAAFEEGKISEAIKKAVRAVGG-------QDMTKAEEITRQVVGILEIIYKDD 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               +E++QD VE  L++SGH +  + Y+LYR +   +RA +S  +        
Sbjct: 58  RAPTVENVQDLVEKQLIESGHAQTAKAYILYRRQHEQLRATKSFMQESIDAIDS 111


>gi|150392202|ref|YP_001322251.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus metalliredigens QYMF]
 gi|149952064|gb|ABR50592.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Alkaliphilus metalliredigens QYMF]
          Length = 784

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 104/663 (15%), Positives = 195/663 (29%), Gaps = 111/663 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           VQV+KR+G    FD  KI  AI KA           S   Q++ + + +     + +   
Sbjct: 2   VQVMKRDGRAVFFDSEKIIHAIEKAMAET------TSGIDQNLSREIAKTIELEIDKSLT 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   +H+EDIQD VE  LM S    + + Y++YR +RS  R      +        +   
Sbjct: 56  S---IHVEDIQDIVENLLMDSNRKDVAKRYIIYRNKRSQSRNKVKKVREQLLSDDFISRY 112

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                          +        + + + +    ET +         +   +LI     
Sbjct: 113 KH--RPSPMKQLGDFVYYRTYSRWVDEENRREYWWETVRR------AVEYNCSLI----- 159

Query: 209 LIEKEPNYAKVTARFL--LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
                P   K   R    +  L ++ L+       +    +   +        +      
Sbjct: 160 -----PTRKKEAERLFDNVYNL-KQFLSGRTFWVGETAVAKHYPMSNYNCSFIV------ 207

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326
                 +  FD       L          +G ++L +            +P+    R+  
Sbjct: 208 ------LDSFDAFKELFYLLM----IGSGVGARVLKEDVSK--------LPKV---RMDY 246

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386
            L  K+     +        +S  F+ +               +    TV D   G   +
Sbjct: 247 DLIHKDYTPVTKNER--EDNTSLQFLHN---------------NTVKITVGDSKEGWIQS 289

Query: 387 LQENAMLAKYS-----GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           L     L   +       +   +  VR  G  +    G + G      +       +   
Sbjct: 290 LDFFFKLIYSNEYRNIKTIIVSYDHVRPKGERLKTFGGTASGHSSLKNMFYKINKVIQNL 349

Query: 442 GKRKGAVCAYLETWHI-DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500
            K  G     L++    D+   +      G  RR               M     +    
Sbjct: 350 KKVNGTKRVKLQSIDCLDIANIIGENVVVGGVRR-----------TAEMMLVDPTDQDCI 398

Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560
                    +   +  +  I +      +     K  R+     L  ++  M + +G P 
Sbjct: 399 EAKSHLYKQIDGQWIVDQNIIHRQMSNNSIYYTEKPTRE----RLHWQIEKMRY-SGEPG 453

Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYD 619
               +    R P  +       N C EI L    +   +CNL +IN+ +      + D D
Sbjct: 454 WVNAEAAAKRRPNMNG-----VNPCGEILL----DSQGLCNLTTINVYSFVSKEGKMDVD 504

Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA--IGLGLMGFQSALHLLHIPYASP 677
            +    R +VR       + C  +E         R   +G  L G+Q  ++   +     
Sbjct: 505 GVLKAQRLSVRAG---YRMTCVELELPAWDAVQQRDKLVGCSLTGWQDMVNATGMNPEEQ 561

Query: 678 EAV 680
           +++
Sbjct: 562 DSL 564


>gi|304317367|ref|YP_003852512.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778869|gb|ADL69428.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 692

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKRNG    F+  KI+ AI KAF AV+    + ++++ D +   T+          
Sbjct: 4   AMKVIKRNGMEEEFNKEKIANAIYKAFEAVDEGEYNDALKIADEV---TKYIEENF---- 56

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                 ++E IQD VE  L++ G  K  + Y+LYR++  D+R  ++       +  +  I
Sbjct: 57  --DGYANVEQIQDIVEQFLIRGGFAKAAKAYILYRKQHQDMREFKNMFMDIEKMVDE-YI 113

Query: 148 MMDDGTLIS-----FNSKRLEMIVEE---ACSGLQDVSSKIV 181
              D  +       ++ + L   +     A   L  +  K V
Sbjct: 114 GKLDWRVNENSNMSYSLQGLNNHIASTITANYWLNKIYPKEV 155


>gi|218680498|ref|ZP_03528395.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           CIAT 894]
          Length = 144

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 33/154 (21%)

Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811
           V T G+ N N  A+ PT +I+ I   + SI P    + ++     G              
Sbjct: 3   VMTSGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAP------- 55

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871
                                    I +D    +  A+EI    +I++ +   + +DQ  
Sbjct: 56  ------------------------FITNDNLDYYQDAYEIGAEKIIDTYAAATRRVDQGL 91

Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
           SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 92  SLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 125


>gi|223985352|ref|ZP_03635422.1| hypothetical protein HOLDEFILI_02728 [Holdemania filiformis DSM
           12042]
 gi|223962678|gb|EEF67120.1| hypothetical protein HOLDEFILI_02728 [Holdemania filiformis DSM
           12042]
          Length = 399

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V+KR+G +T FD SKIS AI KAF A + +  S       +I  L  +         K
Sbjct: 2   YKVVKRDGMITEFDISKISLAITKAFEAQQKQYHSS------VIDMLALRVTADFEGKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  ++ +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S       +     + 
Sbjct: 56  ND-LIQVEDIQDSVESILIQSGYSDVAKAYILYRKQREKIRNMKSTILDYKELVDS-YVK 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET-YKNMYD 191
             D  +      +    V  +  GL   +S  + +      +YD
Sbjct: 114 ATDWRV------KENSTVTYSVGGLILNNSGAITANYWLSEIYD 151


>gi|317133406|ref|YP_004092720.1| anaerobic ribonucleoside-triphosphate reductase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471385|gb|ADU27989.1| anaerobic ribonucleoside-triphosphate reductase [Ethanoligenens
           harbinense YUAN-3]
          Length = 781

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI KA  A  G          D+   L E+    + +    
Sbjct: 4   RIRKRDGREAPFNMEKIANAIYKAARANGG-------HDYDMAVALAEKVTEEIQRR-SG 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E IQD VE  L+++GH +  + Y+LYR  R+ VR   +              + 
Sbjct: 56  DSIPTVEGIQDIVEHVLIETGHARTAKAYILYRANRTRVRDMNTRLMKIYEELTFKSSLD 115

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 116 NDLKRENANID 126


>gi|330859934|emb|CBX70264.1| hypothetical protein YEW_LG48160 [Yersinia enterocolitica W22703]
          Length = 367

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 25/354 (7%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S S+L+   + +   L + +     +  ++ AR    +   +     +   +K  +    
Sbjct: 12  SSSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKLDY---- 67

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308
                     +EEG   + + E      +  L      ++     +LG    Y  Y L  
Sbjct: 68  ---------LVEEGYYEKEVLEKYDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKT 118

Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366
            +G R  E  +     VA+ LA      ++ A +    + +  F  +TPT  N G +   
Sbjct: 119 FDGKRYLERYEDRVCMVALTLAAG---NQQVARDLVEEIITGRFQPATPTFLNCGKKQRG 175

Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426
           +L SCFL  + D++  I  ++     L+K  GG+    T +R +GA I     +S GVIP
Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIP 235

Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486
            +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    IP
Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 295

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFR 538
           D+  +    N    LFSP +V  ++   L        Y          + K+ R
Sbjct: 296 DITFELAKNNEEMYLFSPYDVEQVYGVPLSEISVSEKYREMVDDKRIHKSKLKR 349


>gi|206890756|ref|YP_002248349.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742694|gb|ACI21751.1| anaerobic ribonucleoside-triphosphate reductase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 1385

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 16/179 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            +IKR+G +  FDP KI+ AI KA       G +      D  K LT + +  L +    
Sbjct: 4   NIIKRDGRIVPFDPEKITVAISKA-------GKATGEFDYDTAKRLTIKVL-LLAEELIR 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-- 147
               H+E+IQD VE  L+ S + K  + Y++YR++ + +R        +       K+  
Sbjct: 56  DRDPHVEEIQDIVEEILLSSPYRKTAKAYIIYRDQHARMREIARQGGLELIDNYLSKVDW 115

Query: 148 MMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + + + +SF+ + L   +         L  +    V           +   DL T   
Sbjct: 116 RISENSNMSFSLQGLNNYISSEISKSYWLHKIYPPEVREAHING---DMHIHDLNTLSA 171


>gi|78186460|ref|YP_374503.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
            luteolum DSM 273]
 gi|78166362|gb|ABB23460.1| ribonucleotide reductase family protein [Chlorobium luteolum DSM 273]
          Length = 1521

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 23/278 (8%)

Query: 575  HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVL 632
            +   + +       +      +   CNL S+NL+            ++L         VL
Sbjct: 811  NHHFIANGIGVHNCSEYMFL-DNTACNLASLNLIHFVDEESGHVKINELRHAAALWTVVL 869

Query: 633  DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692
            +  + +         + ++ +R +GLG     + L +L IPY SP+A+ +A      I+ 
Sbjct: 870  EISVLMAHFPSPDIARLSYEYRTLGLGFANLGTVLMVLGIPYDSPKALALAGAISAIITG 929

Query: 693  HAISASVELAQERGAYSSFKGS------------LWDQGVFPIDSIGLLAEVRD------ 734
             A   S E++++ G +  ++ +               +     +   L  + R       
Sbjct: 930  QAYVTSAEISRDLGPFDGYQANSKEMLRVIRNHRRAARNESEEEYEELSVKPRGIDSEYC 989

Query: 735  ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVK 792
               +   +   WDE  ++ K  G RN+    IAPT TI  +    +  I+P +  + + K
Sbjct: 990  PKELFEAAGSVWDEALQKGKKYGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKK 1049

Query: 793  SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
                G F +VN  +   LK+     + +    KY  GS
Sbjct: 1050 LAGGGYFKIVNQSVHKALKRLGYAAQEIEEIEKYCKGS 1087



 Score = 80.3 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 9/101 (8%)

Query: 817  DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRRQKWID 868
            D    +D      +I     +  +   +   A          I+ M  +   S  Q +I 
Sbjct: 1165 DAEAANDFICGTMTIEGAPHLKLEHLPVFDCASRCGQKGLRFINHMAHVRMMSSVQPFIS 1224

Query: 869  QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
             A S  + +    +  ++  +Y   W   +K     R  S 
Sbjct: 1225 GAISKTVNMPATATTAEIGEVYLSGWQHMVKAITVYRDGSK 1265



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 120/361 (33%), Gaps = 84/361 (23%)

Query: 304 RYFLHINGSRIEMPQA---FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                      + P+    F+  VA  L  ++      + +++N   +F +  + P   +
Sbjct: 101 WRQWGEKHGYFDSPEDAEAFYDEVAYMLIAQQGAPN--SPQWFNTGLNFAYGITGPAQGH 158

Query: 361 S--------------GTRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
                              PQ  +CF+ +V D   +  GIF      A + K+  G G +
Sbjct: 159 YHVDPATKKVVESEDAYTRPQAHACFIQSVNDDLVNEGGIFDLAVREARVFKFGSGSGTN 218

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G       G S G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F
Sbjct: 219 YSNLRSSGEK-LSGGGSSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIIDIDHPDVEKF 277

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK------ 516
           ++ +    D   +   +   + I   F++ + + A        E   L  L         
Sbjct: 278 IEWKAREED---KVASLVAGSRICSRFLQAIVEEAILNGADRLENPKLQRLIENALHRAV 334

Query: 517 -------------------EFEIAYENYERQAD--------------------------- 530
                              +FE    +YE +A                            
Sbjct: 335 PMSYIIRVLALVEQGYTTLDFEEYDTHYESEAYQTVGGQNSNNTVRVTNAFMKAVENNEL 394

Query: 531 -----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                R   K  R ++A  LW K+L   ++   P + F    N        G +++SN C
Sbjct: 395 WMLKERTTGKTARAVNARELWEKILLSAWKCADPGLQFDTTINEWHTCPAAGRINASNPC 454

Query: 586 T 586
            
Sbjct: 455 V 455


>gi|303327408|ref|ZP_07357849.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           3_1_syn3]
 gi|302862348|gb|EFL85281.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           3_1_syn3]
          Length = 755

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    FD  KI  AI KA  AV G+  S +  +             ++ +     
Sbjct: 9   IMKRDGASVPFDSVKILNAITKANQAVGGEDMSPTDLLF---------VTEKVCRKLDER 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            + H+E+IQD VE +L+Q  + K  + Y+LYR E + +R A+S+             + +
Sbjct: 60  SLRHVEEIQDVVEETLIQYDYAKTAKAYILYRAEHAKIRNAESYLMDIYKKLTYSPAIRE 119

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 120 DIKRENANID 129


>gi|255024696|ref|ZP_05296682.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J1-208]
          Length = 141

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 31/159 (19%)

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V+   L  
Sbjct: 1   LAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL-- 58

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868
                                   N+   P   K  +     +D    +    RRQ+ +D
Sbjct: 59  ------------------------NLSTYPYYEKGAYK----VDQFASVRQNGRRQRHVD 90

Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           Q+ S N Y+       KL  ++  AW  GLKTTYY+RS 
Sbjct: 91  QSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSN 129


>gi|302669154|ref|YP_003832304.1| anaerobic ribonucleoside triphosphate reductase NrdD2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396818|gb|ADL35722.1| anaerobic ribonucleoside triphosphate reductase NrdD2 [Butyrivibrio
           proteoclasticus B316]
          Length = 798

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  F+ SKIS AI KAF+A++    S       +I  +  +  +       
Sbjct: 2   YQVVKRDGKIADFNISKISSAITKAFIALDKDYHSS------VIDLIALRVASDFEGKVA 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +E+IQD VE  L ++G+  + + Y+LYR++R  VR
Sbjct: 56  DGK-ITVEEIQDSVEKVLSEAGYTDVAKAYILYRKQREKVR 95



 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--------DVSSKIVLSETYKNMYDG-LSES 196
           +++  DG +  FN  ++   + +A   L         D+ +  V S+    + DG ++  
Sbjct: 3   QVVKRDGKIADFNISKISSAITKAFIALDKDYHSSVIDLIALRVASDFEGKVADGKITVE 62

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +++      S   +  E  Y  V   ++L   R++             + ++   Y +  
Sbjct: 63  EIQD-----SVEKVLSEAGYTDVAKAYILY--RKQREKVRNVNSALVNYKDIVNDYLKIN 115

Query: 257 CRYIEEG 263
              ++E 
Sbjct: 116 DWRVKEN 122


>gi|150389197|ref|YP_001319246.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949059|gb|ABR47587.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 710

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 18/179 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V KRNG +  FD  KI  AI  A  +V GK    + R+  +  ++  +T      
Sbjct: 1   MGVMKVQKRNGEIVDFDAIKIKEAIFSAAKSVGGKDEMTASRLSKLAVDIVSETYAA--- 57

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                 I  +EDIQD VE  L++ GH K  + Y+LYR+++ D+R  ++       +  + 
Sbjct: 58  -----NIPSVEDIQDIVEKVLIEEGHAKTAKSYILYRKKQKDIREVKNLFMDAEVMVEE- 111

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
            + ++D  +           +  +  GL +   + +  + + N    +   +L  A I 
Sbjct: 112 YVNLEDWRVNE------NANMGFSLQGLNNHIVESITKKYWLN---KIYTKELRDAHIQ 161


>gi|317056536|ref|YP_004105003.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
 gi|315448805|gb|ADU22369.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
          Length = 762

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 30/266 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V++ KR+G   +F+  KI++AI KA  +V G          +    L+ + V  L+ +N 
Sbjct: 3   VKIKKRDGRTVTFNIEKIAQAIYKAAESVGG-------SDYETALELSGKVVDMLMANNI 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S     +E+IQD VE  L++ GH    + Y+LYR ER+  R   +               
Sbjct: 56  S--TPTVEEIQDCVEKVLIEEGHAATAKSYILYRSERTRAREMDTRLMKVYEDLTFSSAE 113

Query: 149 MDDGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYKNMYD--GLSESDLETALI 203
             D    + N      +  +++    G ++     VL E +   ++   +   D++   +
Sbjct: 114 DSDLKRENANIDGDTAMGTMLKYGSVGAKEFYEMYVLEEDHARAHEDGDIHIHDMDFYTL 173

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
            ++ T I                 L +                     Y    C  I+  
Sbjct: 174 TTTCTQI----------------DLTKLFTGGFSTGHGYLRTPNDITSYAALACIAIQSN 217

Query: 264 VKARLLHESMMDFDLVYLANDLKYER 289
              +   +S+  FD        K  R
Sbjct: 218 QNDQHGGQSIPKFDYDMAEGVKKTFR 243


>gi|186688097|gb|ACC86126.1| anaerobic ribonucleoside-triphosphate reductase [uncultured
           bacterium]
          Length = 322

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + +F   KISRAI  A   V G           +  ++ ++ +  +      
Sbjct: 4   QIKKRDGRIVNFSKEKISRAIFMAAREVGG-------SDFAMADSIADKVINYMATVLPP 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             I  +E +QD VE  L++ GH K  + Y+LYR +R+  R A++  
Sbjct: 57  DEIPTVEFVQDCVEKVLIEDGHAKTAKAYILYRAKRTRYREAKTEL 102


>gi|284048540|ref|YP_003398879.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952761|gb|ADB47564.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 802

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
             V+KR+G +  FD +KIS AI KAF A+             II  L  Q         K
Sbjct: 2   YSVVKRDGQIVDFDVTKISSAITKAFEALHKNYHPS------IINMLALQVTADFDPKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +E IQD VE  L  SG+  + + Y+LYR++R  +R
Sbjct: 56  DDR-ISVESIQDSVEKVLSDSGYADVAKAYILYRKQREQIR 95



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETA 201
            ++  DG ++ F+  ++   + +A   L       +++    +   +    + +  +   
Sbjct: 3   SVVKRDGQIVDFDVTKISSAITKAFEALHKNYHPSIINMLALQVTADFDPKIKDDRISVE 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I  S   +  +  YA V   ++L   R++             + ++   Y       ++
Sbjct: 63  SIQDSVEKVLSDSGYADVAKAYILY--RKQREQIRNVNSSLLNYKDLVDNYLHVNDWRVK 120

Query: 262 EG 263
           E 
Sbjct: 121 EN 122


>gi|255283025|ref|ZP_05347580.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
 gi|255266327|gb|EET59532.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
          Length = 771

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG   +FD +KI  AI KA        A          + L ++ +  +       
Sbjct: 12  IKKRNGRPVTFDRTKIENAIRKA-----NDAAKVEAIAPCQFEKLVDEVIAFI----PEG 62

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE  L+ +G  K  + Y+LYR E + VR  ++           +     
Sbjct: 63  EVPDVEQVQDLVEERLIANGFAKTAKAYILYRAEHTKVRKTEADLVQIYRELTFVSAADA 122

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 123 DMKRENANID 132


>gi|107101355|ref|ZP_01365273.1| hypothetical protein PaerPA_01002390 [Pseudomonas aeruginosa PACS2]
          Length = 675

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A       G +         + L E+ V            
Sbjct: 15  KRNGREVPFDPGKIERAIAAA-------GQATGEFDPQQAQALAERVVE----RLPERAC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + IE +QD VE  LM++GH+   R YV+YRE    +R  + 
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLRRERK 104


>gi|116049873|ref|YP_791318.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313111346|ref|ZP_07797161.1| putative ribonucleotide reductase [Pseudomonas aeruginosa 39016]
 gi|115585094|gb|ABJ11109.1| putative ribonucleotide reductase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310883663|gb|EFQ42257.1| putative ribonucleotide reductase [Pseudomonas aeruginosa 39016]
          Length = 675

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A       G +         + L E+ V            
Sbjct: 15  KRNGREVPFDPGKIERAIAAA-------GQATGEFDPQQAQALAERVVE----RLPERAC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + IE +QD VE  LM++GH+   R YV+YRE    +R  + 
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLRRERK 104


>gi|15597116|ref|NP_250610.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PAO1]
 gi|218892122|ref|YP_002440989.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa LESB58]
 gi|254235012|ref|ZP_04928335.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296389671|ref|ZP_06879146.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PAb1]
 gi|9947914|gb|AAG05308.1|AE004618_2 class III (anaerobic) ribonucleoside-triphosphate reductase
           subunit, NrdD [Pseudomonas aeruginosa PAO1]
 gi|126166943|gb|EAZ52454.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218772348|emb|CAW28130.1| putative ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
          Length = 675

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A       G +         + L E+ V            
Sbjct: 15  KRNGREVPFDPGKIERAIAAA-------GQATGEFDPQQAQALAERVVE----RLPERAC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           + IE +QD VE  LM++GH+   R YV+YRE    +R  + 
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVYRERHGRLRRERK 104


>gi|224541069|ref|ZP_03681608.1| hypothetical protein CATMIT_00220 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525993|gb|EEF95098.1| hypothetical protein CATMIT_00220 [Catenibacterium mitsuokai DSM
           15897]
          Length = 788

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVIKR+G +T FD  KI+RAI KAF++++ +          +I  L  +  +   +  K
Sbjct: 2   YQVIKRDGKITEFDLKKITRAIEKAFISLKKEYHPS------VIDMLALKVTSDFEKKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               + +EDIQD VE  L Q+G+  + + Y+LYR++R  VR  +S       +   
Sbjct: 56  D-HKIAVEDIQDSVEDILSQAGYSDVAKSYILYRKQREKVRNMKSTILDYKDLVNS 110



 Score = 46.4 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 55/175 (31%), Gaps = 19/175 (10%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----KIVLSETYKNMYDGLSESDLETA 201
           +++  DG +  F+ K++   +E+A   L+         ++  +   +    + +  +   
Sbjct: 3   QVIKRDGKITEFDLKKITRAIEKAFISLKKEYHPSVIDMLALKVTSDFEKKIKDHKIAVE 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I  S   I  +  Y+ V   ++L   R++       K     + ++   Y       ++
Sbjct: 63  DIQDSVEDILSQAGYSDVAKSYILY--RKQREKVRNMKSTILDYKDLVNSYVNATDWRVK 120

Query: 262 EGVKARL------------LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304
           E                  +  +    ++          RD  F    L +L   
Sbjct: 121 ENSTVTYSVGGLILSNSGAITANYWLSEIYDQEIA-DAHRDGDFHIHDLSMLTGY 174


>gi|313622836|gb|EFR93155.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria
           innocua FSL J1-023]
          Length = 140

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 31/157 (19%)

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810
           K V   G+RN+  +A+AP  + A I G + SIDP Y   Y +        V+   L    
Sbjct: 2   KEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL---- 57

Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870
                                 N+   P   K  +     +D    +    RRQ+ +DQ+
Sbjct: 58  ----------------------NLSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQS 91

Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
            S N Y+       KL  ++  AW  GLKTTYY+RS 
Sbjct: 92  LSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSN 128


>gi|213027740|ref|ZP_03342187.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 136

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 12/143 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
            ++  LI ++ P+Y  + AR  +  LR++                       +  + +E 
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112

Query: 263 GVKARLLHESMMDFDLVYLANDL 285
           G     L E   + +   + + +
Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFI 135


>gi|323692184|ref|ZP_08106427.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323503758|gb|EGB19577.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 790

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  F+  KI+ AI KAF A +          Q+I++ L+ +          
Sbjct: 2   ISVIKRDGEVADFNLGKITNAIKKAFKATKNDYN------QEILELLSLRVTADFQSKMT 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E IQD VE  L Q+G+ ++ + Y+LYR++R  +R  ++       +     + 
Sbjct: 56  DGK-VSVEQIQDSVEHVLEQTGYTEVAKAYILYRKQREKIRNMKATILDYKDVVNS-YVQ 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116



 Score = 42.1 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            + ++  DG +  FN  ++   +++A    ++  ++ +L         +    +++  + 
Sbjct: 1   MISVIKRDGEVADFNLGKITNAIKKAFKATKNDYNQEILELLSLRVTADFQSKMTDGKVS 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              I  S   + ++  Y +V   ++L   R++       K     + ++   Y +
Sbjct: 61  VEQIQDSVEHVLEQTGYTEVAKAYILY--RKQREKIRNMKATILDYKDVVNSYVQ 113


>gi|323486670|ref|ZP_08091991.1| hypothetical protein HMPREF9474_03742 [Clostridium symbiosum
           WAL-14163]
 gi|323400051|gb|EGA92428.1| hypothetical protein HMPREF9474_03742 [Clostridium symbiosum
           WAL-14163]
          Length = 790

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  F+  KI+ AI KAF A +          Q+I++ L+ +          
Sbjct: 2   ISVIKRDGEVADFNLGKITNAIKKAFKATKNDYN------QEILELLSLRVTADFQSKMT 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E IQD VE  L Q+G+ ++ + Y+LYR++R  +R  ++       +     + 
Sbjct: 56  DGK-VSVEQIQDSVEHVLEQTGYTEVAKAYILYRKQREKIRNMKATILDYKDVVNS-YVQ 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116



 Score = 42.1 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            + ++  DG +  FN  ++   +++A    ++  ++ +L         +    +++  + 
Sbjct: 1   MISVIKRDGEVADFNLGKITNAIKKAFKATKNDYNQEILELLSLRVTADFQSKMTDGKVS 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              I  S   + ++  Y +V   ++L   R++       K     + ++   Y +
Sbjct: 61  VEQIQDSVEHVLEQTGYTEVAKAYILY--RKQREKIRNMKATILDYKDVVNSYVQ 113


>gi|313898389|ref|ZP_07831926.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
 gi|312956771|gb|EFR38402.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
          Length = 792

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QVIKR+G ++ FD +KIS AI KAF AVE +          II  L  +  +      +
Sbjct: 2   YQVIKRDGKISEFDIAKISNAIQKAFDAVERQYHPS------IIDMLALRVTSDFEPKIR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S       +     + 
Sbjct: 56  HDR-IQVEDIQDSVESILIQSGYGDVAKCYILYRKQREKIRNMKSTILDYKELVDS-YVK 113

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET-YKNMYD 191
             D  +      +    V  +  GL   +S  + +      +YD
Sbjct: 114 ATDWRV------KENSTVTYSVGGLILNNSGAITANYWLSEIYD 151


>gi|257792307|ref|YP_003182913.1| anaerobic ribonucleoside triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|257476204|gb|ACV56524.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella lenta
           DSM 2243]
          Length = 775

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF       A  +++ +   +++ ++ V +L       
Sbjct: 5   IMKRDGRTVEFKQEKIAEAVERAF------QACGAMQDRAAAEDIAQRVVDKLESGAIEG 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S            K    
Sbjct: 59  A-PTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNSRLIQTLKDITFSKASDS 117

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 118 DMKRENANID 127


>gi|325833573|ref|ZP_08166022.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
 gi|325485497|gb|EGC87966.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
          Length = 805

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF       A  +++ +   +++ ++ V +L       
Sbjct: 35  IMKRDGRTVEFKQEKIAEAVERAF------QACGAMQDRAAAEDIAQRVVDKLESGAIEG 88

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S            K    
Sbjct: 89  A-PTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNSRLIQTLKDITFSKASDS 147

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 148 DMKRENANID 157


>gi|317490230|ref|ZP_07948718.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|316910724|gb|EFV32345.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
          Length = 775

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI+ A+ +AF       A  +++ +   +++ ++ V +L       
Sbjct: 5   IMKRDGRTVEFKQEKIAEAVERAF------QACGAMQDRAAAEDIAQRVVDKLESGAIEG 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E +QD VE +L++SG  +  + Y+LYR ERS  R   S            K    
Sbjct: 59  A-PTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRSRDVNSRLIQTLKDITFSKASDS 117

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 118 DMKRENANID 127


>gi|257792461|ref|YP_003183067.1| anaerobic ribonucleoside triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|317490328|ref|ZP_07948814.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|325833526|ref|ZP_08165975.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
 gi|257476358|gb|ACV56678.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella lenta
           DSM 2243]
 gi|316910618|gb|EFV32241.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           1_3_56FAA]
 gi|325485450|gb|EGC87919.1| anaerobic ribonucleoside-triphosphate reductase [Eggerthella sp.
           HGA1]
          Length = 813

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G +  FD +KIS AI KAF A+E +           I  L            K
Sbjct: 2   YEVQKRDGKIAEFDIAKISSAISKAFDALEKQYHPS------TIDLLALNVTAHFEPRIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +  I+ +ED+QD VE  L  +G+  + + Y+LYR++R  VR A +       +  +  + 
Sbjct: 56  NG-IISVEDVQDSVEEVLSTAGYADVAKSYILYRKQREKVRNANATLLDYKDLVDQ-YVK 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116


>gi|114567781|ref|YP_754935.1| anaerobic ribonucleoside triphosphate reductase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338716|gb|ABI69564.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 718

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 8/116 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  F+  KI++AI KA  AV G       +      +LT++ V  + Q+   
Sbjct: 5   KIKKRDGRIVPFEKEKITKAIWKAAQAVGG-------KDYQTALDLTDKVVE-IAQYVDD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             I  +E IQD VE  L+++G++K  + Y+LYR++  D+R       ++  IA  L
Sbjct: 57  DEIATVEGIQDLVERVLVKNGNYKTAKAYILYRKQHEDMRETNQLLFNNKIIADYL 112


>gi|284049138|ref|YP_003399477.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283953359|gb|ADB48162.1| anaerobic ribonucleoside-triphosphate reductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 708

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 10/103 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   SFD +KI  AI KA  AVEGK   R   +++I   +  +   RLL    
Sbjct: 1   MKVIKRDGSTVSFDRNKIVTAISKANKAVEGKERLRQEDIEEIASFVEHKNKKRLL---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 +EDIQD VE  +M  GH+++ + Y++YR  R+ VR A
Sbjct: 57  ------VEDIQDMVEKQIMIRGHYELAKAYIIYRYNRALVRKA 93



 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 34/212 (16%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA------CSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           +K++  DG+ +SF+  ++   + +A         L+    + + S         L   D+
Sbjct: 1   MKVIKRDGSTVSFDRNKIVTAISKANKAVEGKERLRQEDIEEIASFVEHKNKKRLLVEDI 60

Query: 199 ETALIFSSRTLIEKEPN---------YAKVTAR----------FLLEKLRREVLTTVYKK 239
           +  +      +I              Y +   R           L+    ++V+     K
Sbjct: 61  QDMVEKQI--MIRGHYELAKAYIIYRYNRALVRKANTTDESILSLISNKNKDVMEENSNK 118

Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD--FDLVYLANDLKYERDFAFEYLG 297
                  +   +  E         V    +  +              ++   +     LG
Sbjct: 119 NAVMVSTQRDLIAGEVSRDLTRRVVLPEKISRAHDQGVIHFHDADYFIQPMFNCCLVNLG 178

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329
             +L +   +H  G  IE P++F  +VA  + 
Sbjct: 179 -DMLDNGTVMH--GKLIESPKSF--QVACTVM 205


>gi|323143426|ref|ZP_08078111.1| anaerobic ribonucleoside-triphosphate reductase [Succinatimonas
           hippei YIT 12066]
 gi|322416831|gb|EFY07480.1| anaerobic ribonucleoside-triphosphate reductase [Succinatimonas
           hippei YIT 12066]
          Length = 755

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 27/275 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   SF+  KI+ AI KA ++V       + + ++++  LTE+ +  +       
Sbjct: 5   IVKRDGRKVSFNQQKIANAIKKALVSVH-PDDDVTPQDEELVVQLTEEVINAIESEV--T 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E  QD +E  L++       + ++LYR++R++VR   +                 
Sbjct: 62  KVPTVEHTQDLIERILIKHDLADEAKNFILYRQQRTNVRTYNAELTQIYRDLTSKSTDDM 121

Query: 151 DGTLISFNSKR---LEMIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETALI 203
           D    + N      + +++     G +D   + VL       + N    + + D     I
Sbjct: 122 DLKRENANIDANAPMGLMLRFGSEGSKDFVKRYVLKPEHALAHSNGSIHIHDLDFYLLTI 181

Query: 204 FSS----RTLIE----------KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
                  ++L +          +EP   +  +      ++         +      +++ 
Sbjct: 182 NCCQISLKSLFKRGFSTGHGFLREPQSIQSASALCCIAIQSNQNDMHGGQSIPMFEYDLA 241

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
              P     YI+   K   +       DL  L + 
Sbjct: 242 ---PYVVTSYIKHLCKVIQITLRDDSIDLSLLKDF 273


>gi|303239258|ref|ZP_07325787.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302593303|gb|EFL63022.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 770

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI KA  A  G          +   +L E+ V  + +    
Sbjct: 4   KIKKRDGREVPFNIEKIANAIFKAASATGG-------HDYESALSLAEKVVDSIEKEM-D 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E+IQD VE  L+ +GH +  + ++LYR +R+ VR   +            +   
Sbjct: 56  KKVPSVEEIQDSVEKVLIDTGHVRTAKAFILYRADRTRVREMNTRLMKIYEDLTFKEAKD 115

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 116 NDMKRENANID 126



 Score = 44.5 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 20/168 (11%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS---GLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KI   DG  + FN +++   + +A S   G    S+  +  +   ++   + +       
Sbjct: 4   KIKKRDGREVPFNIEKIANAIFKAASATGGHDYESALSLAEKVVDSIEKEMDKKVPSVEE 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           I  S   +  +  + +    F+L +              +    EM     + +     +
Sbjct: 64  IQDSVEKVLIDTGHVRTAKAFILYR------------ADRTRVREMNTRLMKIYEDLTFK 111

Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310
             K   +     + D       +       +   G +  Y+ Y L   
Sbjct: 112 EAKDNDMKRENANIDGDTAMGTM-----LKYGSEGAKQFYEMYVLKPE 154


>gi|189500136|ref|YP_001959606.1| anaerobic ribonucleoside triphosphate reductase [Chlorobium
           phaeobacteroides BS1]
 gi|189495577|gb|ACE04125.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           phaeobacteroides BS1]
          Length = 730

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 73/181 (40%), Gaps = 19/181 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G V SF+  KI+ A+ +A  A            +     L+ Q V  L      
Sbjct: 12  KIIKRDGKVVSFNREKITFALFRALRATGNP-------DRQYAAELSAQVVASLEAKRAK 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI-- 147
                +E+IQD VE  L ++      + Y++YR +  ++R A+    +   +   L +  
Sbjct: 65  -EPPSVEEIQDVVEKVLFENCAFDAAKAYIIYRFQHGNMREAKEIFANIDLVDDYLHLKD 123

Query: 148 --MMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             + ++  L S++ + L   +     +   L ++    +     +     +   DL +  
Sbjct: 124 WRVKENANL-SYSLQGLNHHISSIVSSQYWLNELYPAEIAEAHKQG---RIHIHDLGSLS 179

Query: 203 I 203
           +
Sbjct: 180 V 180


>gi|257064524|ref|YP_003144196.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
 gi|256792177|gb|ACV22847.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
          Length = 816

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV+KR+G +  F   KIS AI KAF A+  +          +I+ +     +       
Sbjct: 2   YQVVKRDGKIVDFSIDKISVAITKAFDALNKQYHPS------VIELIALHVTSDFEDKIV 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               + +EDIQD VE  L +SG+  + + Y+LYR +R  VR   S   +   +  
Sbjct: 56  DDK-ITVEDIQDSVEKVLSESGYADVAKAYILYRRQREKVRNVNSALLNYKDLVD 109



 Score = 45.2 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----KIVLSETYKNMYDGLSESDLETA 201
           +++  DG ++ F+  ++ + + +A   L         +++      +  D + +  +   
Sbjct: 3   QVVKRDGKIVDFSIDKISVAITKAFDALNKQYHPSVIELIALHVTSDFEDKIVDDKITVE 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
            I  S   +  E  YA V   ++L + +RE             + ++   Y +     ++
Sbjct: 63  DIQDSVEKVLSESGYADVAKAYILYRRQRE--KVRNVNSALLNYKDLVDNYLKINDWRVK 120

Query: 262 EG 263
           E 
Sbjct: 121 EN 122


>gi|160931567|ref|ZP_02078962.1| hypothetical protein CLOLEP_00399 [Clostridium leptum DSM 753]
 gi|156869438|gb|EDO62810.1| hypothetical protein CLOLEP_00399 [Clostridium leptum DSM 753]
          Length = 795

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/477 (15%), Positives = 148/477 (31%), Gaps = 62/477 (12%)

Query: 22  FPEKIKGV--QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
           F  + + +  ++IKR+G    F+  KIS AI KA  A+ G         + + + L +Q 
Sbjct: 6   FKGEERSMIERIIKRDGREVPFEIDKISTAIYKAAEAIGGHN-------RGVAEELAKQV 58

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              + +  K +    +E IQD VE +L++SGH +  +EY+LYR +R+  R   +      
Sbjct: 59  EDYIEKEEKIS-TPTVEHIQDVVERTLIESGHSRTAKEYILYRADRTRHREMNTRLMKIY 117

Query: 140 PIAPKLKIMMDDGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYKNMYD--GLS 194
                     +D    + N      +  +++    G +      +L   +   +    + 
Sbjct: 118 EDLTFKAAKDNDIKRENANIDGDTAMGTMLKYGSEGAKQFYEMYILDPAHAKAHREGDIH 177

Query: 195 ESDLETALIFSSRTLIE----------------KEPN----YAKVTARFLLEKLRREVLT 234
             DL+   + ++   I+                +EPN    Y+ +    +      +   
Sbjct: 178 IHDLDFLTLTTTCCQIDLDKLFTGGFSTGHGFLREPNDIASYSALACIAIQSNQNDQHGG 237

Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL-------LHESMMDFDLVYLANDLKY 287
                   A    +   Y   + + +   ++          L + +M       A  +  
Sbjct: 238 QSIPNFDYAMAKGVIKTYQRIYRQNMARAIEIMEDAEDASALSKEIMAAATEKSAGAIPK 297

Query: 288 ERDFA-FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346
             D   +    LQIL D++         E  Q F    A   A  ET++       Y  +
Sbjct: 298 LEDGEAYMEAELQILTDKFGA----ESAEKIQKF----AFKHAGAETDR-----ATYQAM 344

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG---GLGND 403
            +F    +T    +S        S     +     G               G        
Sbjct: 345 EAFVHNLNT---MHSRAGAQIPFSSINYGMDTTPEGRMVIRNVLLATEAGLGNGETPIFP 401

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               +      +     +  +       +   +  N           Y +  H + E
Sbjct: 402 IHIFKVKEGVNYNPGEPNYDLFKLACRVSAKRLFPNFSFIDAPYNLQYYKPGHPETE 458


>gi|11762259|gb|AAG40404.1|AF325052_1 At2g21790 [Arabidopsis thaliana]
          Length = 104

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 7/102 (6%)

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QSLN+++D+P+  KL  ++   W  GLKT  YYLRSR+A    K T+ 
Sbjct: 1   MAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVD 60

Query: 918 GVDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K           V + ++ T    +  S T+  EC  C
Sbjct: 61  TAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 102


>gi|169335229|ref|ZP_02862422.1| hypothetical protein ANASTE_01637 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257967|gb|EDS71933.1| hypothetical protein ANASTE_01637 [Anaerofustis stercorihominis DSM
           17244]
          Length = 777

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 96/271 (35%), Gaps = 25/271 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G  + ++  KI+ AI KA         +   +     K L+++    +L     
Sbjct: 4   EILKRDGRTSRYEKKKITDAIYKA-------AEAAGGQDYATAKELSDKV-DNILNEKYI 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
            ++  +E IQD VE +L++SGH K  + Y+LYR ER+ VR   +              + 
Sbjct: 56  DIVPTVEQIQDTVEKTLIESGHAKTAKNYILYRAERNKVREMNTKLMKIYEDLTFKSSIE 115

Query: 150 DDGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           +D    + N      +  +++    G ++     +L E +              A   + 
Sbjct: 116 NDVKRENANINGDTAMGTMLKYGSEGAKNFYEMFILDEKH--------------AAAHAK 161

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
             +   + ++  +T       L++                +    Y    C  I+     
Sbjct: 162 GDIHIHDLDFYTLTTTCCQIDLQKLFKGGFSTGNGFIREPKDIRTYSALACIAIQSNQND 221

Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
           +   +S+  FD        K  R      + 
Sbjct: 222 QHGGQSIPKFDYDLAQGVKKTYRKTYITNMA 252


>gi|283796119|ref|ZP_06345272.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
 gi|291076335|gb|EFE13699.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
          Length = 898

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G +  F+ +KI+ AI KAF A   + +      Q+I++ L+ +         K
Sbjct: 100 INVIKRDGEIADFNLAKITNAIKKAFKATSNEYS------QEILELLSLRVTADFQPKLK 153

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   + +E+IQD VE  L Q+G+ ++ + Y+LYR++R  +R  ++       +     + 
Sbjct: 154 NGK-ISVEEIQDSVEHVLEQTGYTEVAKAYILYRKQREKIRNMKATILDYKDVVNS-YVK 211

Query: 149 MDD 151
           ++D
Sbjct: 212 VED 214



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            + ++  DG +  FN  ++   +++A     +  S+ +L         +    L    + 
Sbjct: 99  MINVIKRDGEIADFNLAKITNAIKKAFKATSNEYSQEILELLSLRVTADFQPKLKNGKIS 158

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              I  S   + ++  Y +V   ++L   R++       K     + ++   Y +
Sbjct: 159 VEEIQDSVEHVLEQTGYTEVAKAYILY--RKQREKIRNMKATILDYKDVVNSYVK 211


>gi|325290819|ref|YP_004267000.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966220|gb|ADY56999.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 707

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI +A+ KA  A       +  R+      +T++ V  L ++  
Sbjct: 1   MYVVKRDGRKEIFNSGKIQQAVEKALTATGADNVDQWSRI------ITDRVVADLNENFS 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
           S   + IE IQD+VE  LM++G+ K+ R Y+ YR +   +R  +   + +  +
Sbjct: 55  SGDGITIEYIQDKVEDILMRTGNTKVARSYIRYRFQHEIIRNQEKAKEENNKL 107



 Score = 41.8 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNMY------DGLS 194
           + ++  DG    FNS +++  VE+A   +G  +V   S+I+      ++       DG++
Sbjct: 1   MYVVKRDGRKEIFNSGKIQQAVEKALTATGADNVDQWSRIITDRVVADLNENFSSGDGIT 60

Query: 195 ESDLET 200
              ++ 
Sbjct: 61  IEYIQD 66


>gi|295106642|emb|CBL04185.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 783

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F+  KI+ A+ +AF       A  +++ +   +++  + V +L +     
Sbjct: 5   IIKRDGRTAEFNEGKIAEAVERAF------QACGAMQDRTAAEDIARKVVEKL-ESGAIE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE +L++SG  +  + Y+LYR ERS  R   S            K    
Sbjct: 58  GVPTVEGVQDLVEETLIESGFVQTAKSYILYRAERSRARDVNSRLIQTLKDITFSKASDS 117

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 118 DMKRENANID 127


>gi|125973164|ref|YP_001037074.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|256003962|ref|ZP_05428948.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 2360]
 gi|281417359|ref|ZP_06248379.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum JW20]
 gi|125713389|gb|ABN51881.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum ATCC 27405]
 gi|255992090|gb|EEU02186.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 2360]
 gi|281408761|gb|EFB39019.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum JW20]
 gi|316940607|gb|ADU74641.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           thermocellum DSM 1313]
          Length = 696

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  + P KI+ AI KA         +         + L  Q    +L     
Sbjct: 4   KISKRDGRIEKYQPEKITWAIFKA-------ATACGGSDFGRAEELCRQV-NEILNKQFK 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             I  +EDIQD VE  L+++GH K  + Y+LYRE+R   R 
Sbjct: 56  DRIPGVEDIQDIVEKVLIENGHAKTAKAYILYREKRKSARD 96


>gi|225575072|ref|ZP_03783682.1| hypothetical protein RUMHYD_03161 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037742|gb|EEG47988.1| hypothetical protein RUMHYD_03161 [Blautia hydrogenotrophica DSM
           10507]
          Length = 789

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  FD  KIS AI KAF A E   +      +D++  L  +           
Sbjct: 3   QVVKRDGEIAEFDLQKISNAICKAFEAKEKHYS------EDMMSLLALRVTADFQDKIAD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +EDIQD VE  L+Q+G+  + + Y+LYR++R  VR  +S       I     + +
Sbjct: 57  EQ-ISVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKVRNMKSTILDYKEIVNS-YVKV 114

Query: 150 DD 151
           +D
Sbjct: 115 ED 116



 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYDGLSESDLE 199
             +++  DG +  F+ +++   + +A         +    ++      +  D +++  + 
Sbjct: 1   MFQVVKRDGEIAEFDLQKISNAICKAFEAKEKHYSEDMMSLLALRVTADFQDKIADEQIS 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              I  S   +  +  Y+ V   ++L   R++       K     + E+   Y +
Sbjct: 61  VEDIQDSVENVLIQAGYSDVAKAYILY--RKQREKVRNMKSTILDYKEIVNSYVK 113


>gi|295109140|emb|CBL23093.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus obeum
           A2-162]
          Length = 791

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  F  SKI+ AI KAF A E   +      +D+I  +  +           
Sbjct: 3   QVVKRDGEIAEFQMSKITAAIDKAFDAKEKVYS------KDMIDLMALRVTADFQNKITD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S       I     + +
Sbjct: 57  GK-VTVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIRNMKSTILDYKEIVDS-YVKV 114

Query: 150 DD 151
           +D
Sbjct: 115 ED 116



 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 46/120 (38%), Gaps = 16/120 (13%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--------CSGLQDVSSKIVLSETYKNMYDG-LS 194
             +++  DG +  F   ++   +++A           + D+ +  V ++    + DG ++
Sbjct: 1   MFQVVKRDGEIAEFQMSKITAAIDKAFDAKEKVYSKDMIDLMALRVTADFQNKITDGKVT 60

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
             D++      S   +  +  Y+ V   ++L   R++       K     + E+   Y +
Sbjct: 61  VEDIQD-----SVENVLIQAGYSDVAKAYILY--RKQREKIRNMKSTILDYKEIVDSYVK 113


>gi|281355198|ref|ZP_06241692.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318078|gb|EFB02098.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
          Length = 778

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 12/150 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G V S+D  KI RAI KA        A+           +       + +    
Sbjct: 4   NIVKRDGRVVSYDDGKIVRAIQKAM------DAAGHTAKAGEAAIIAAAASAIVEEKCP- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ----SHSKSDAPIAPKL 145
                +EDIQD VE +LM++G  ++ + Y+LYR ER+  R  +             A   
Sbjct: 57  GKAPQVEDIQDAVEIALMRNGLEEVAKSYILYRAERTRTREMKTGLMKIFDELTFAAAND 116

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD 175
             M  D   I  ++  +  +++  C G +D
Sbjct: 117 SDMKRDNANIDGDTA-MGTMLKYGCEGAKD 145


>gi|307297317|ref|ZP_07577123.1| anaerobic ribonucleoside-triphosphate reductase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916577|gb|EFN46959.1| anaerobic ribonucleoside-triphosphate reductase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 717

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KRNG +  FD  KI  A+ KAF A E          +DI++ +  + V        
Sbjct: 2   LNVRKRNGAIVGFDLDKIINAMKKAFDATETHYN------EDILERVALRVVADFQPKAT 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              ++ IEDIQD VE +L   G   + + Y+LYR  R  +R 
Sbjct: 56  DN-LIDIEDIQDSVERTLESLGFTDVAKSYILYRRHREKLRE 96


>gi|213024644|ref|ZP_03339091.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 162

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 40/166 (24%)

Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808
           L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K++  G    V      
Sbjct: 3   LRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-- 60

Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-LIESASRRQKWI 867
                                         + LK  +   +E+      ++     QK+I
Sbjct: 61  ------------------------------EHLKDAYELLWEMPNNDGYLQLVGIMQKFI 90

Query: 868 DQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           DQ+ S N   D       +   ++L      A+  G+KT YY  +R
Sbjct: 91  DQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTR 136


>gi|302387220|ref|YP_003823042.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197848|gb|ADL05419.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 690

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 29/208 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SK+  A+ KAF A              I++ L  +  +      K
Sbjct: 2   LKVIKRDGAEAGFDLSKVKEAMKKAFTATGKYY------TDSIVELLALRVASDFKDKVK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E+IQD VE  L ++G+  + + Y+LYR++R+ +R+    +     +     + 
Sbjct: 56  EDR-VAVEEIQDSVEKVLEETGYTDVAKAYILYRKQRAKIRSLGGTTLDYKDVVDN-YVK 113

Query: 149 MDD-----GTLISFNSKRL---EMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++D      + ++++   L         A   L ++  K +     +     +   DL  
Sbjct: 114 VEDWHVKENSTVTYSVGGLILNNSGAVTANYWLSEIYDKEIADAYNRG---DIHIHDLSM 170

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKL 228
              +S          ++    R LL+ L
Sbjct: 171 LTGYSC--------GWSL--KRLLLDGL 188



 Score = 44.1 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSS--KIVLSETYKNMYDGLSESDLE 199
            LK++  DG    F+  +++  +++A   +G     S  +++      +  D + E  + 
Sbjct: 1   MLKVIKRDGAEAGFDLSKVKEAMKKAFTATGKYYTDSIVELLALRVASDFKDKVKEDRVA 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
              I  S   + +E  Y  V   ++L   R++             + ++   Y +    +
Sbjct: 61  VEEIQDSVEKVLEETGYTDVAKAYILY--RKQRAKIRSLGGTTLDYKDVVDNYVKVEDWH 118

Query: 260 IEEG 263
           ++E 
Sbjct: 119 VKEN 122


>gi|255018949|ref|ZP_05291075.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL F2-515]
          Length = 134

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 31/151 (20%)

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G+RN+  +A+AP  + A I G + SIDP Y   Y +        V+   L          
Sbjct: 2   GLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL---------- 51

Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876
                           N+   P   K  +     +D    +    RRQ+ +DQ+ S N Y
Sbjct: 52  ----------------NLSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFY 91

Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906
           +       KL  ++  AW  GLKTTYY+RS 
Sbjct: 92  VPSGIKASKLLELHMTAWNEGLKTTYYVRSN 122


>gi|187251462|ref|YP_001875944.1| anaerobic ribonucleoside triphosphate reductase [Elusimicrobium
           minutum Pei191]
 gi|186971622|gb|ACC98607.1| Anaerobic ribonucleoside-triphosphate reductase [Elusimicrobium
           minutum Pei191]
          Length = 746

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 9/113 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            K + + KR+G +  +D  KI+ AI+K+  A   + A+ + R       L  +    L +
Sbjct: 4   TKVLTITKRDGRIVLYDEKKIANAILKSLAATGQEDAAAAAR-------LANEVGNTLAE 56

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             K      IEDIQD+VE +LM +G+ +  + Y+LYR +R+ VR + +    +
Sbjct: 57  KGKDNYF--IEDIQDEVERALMHNGYEETAKSYILYRAKRTRVRESNTALMQE 107


>gi|325681522|ref|ZP_08161047.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
 gi|324106789|gb|EGC01080.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
          Length = 756

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V++ KR+G   +F+  KI++AI KA  +V G          +    L+ + V  L+   K
Sbjct: 3   VKIKKRDGRTVTFNIEKIAQAIYKAAESVGG-------SDYETALELSGKVVDMLM--AK 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           + +   +E+IQD VE  L++ GH    + Y+LYR  R+  R   +               
Sbjct: 54  NVITPSVEEIQDCVEKVLIEEGHAATAKSYILYRSMRTKAREMDTRLMKVYEDLTFKSAE 113

Query: 149 MDDGTLISFNSK 160
             D    + N  
Sbjct: 114 DSDLKRENANID 125


>gi|221195724|ref|ZP_03568778.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium rimae
           ATCC 49626]
 gi|221184490|gb|EEE16883.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium rimae
           ATCC 49626]
          Length = 740

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +FD  KI  AI KA   V G        ++    N+T++ +        
Sbjct: 1   MKIIKRNGSEVTFDVDKIENAIAKANAEVNGDERLTDREIRFAALNVTDECMEA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E++QD VE  LM   H ++ R+Y++YR  ++  R  
Sbjct: 55  -GHTVTVEEVQDLVEDQLMALDHFEVARKYIIYRYVQNQRRQK 96


>gi|288942003|ref|YP_003444243.1| anaerobic ribonucleoside-triphosphate reductase [Allochromatium
           vinosum DSM 180]
 gi|288897375|gb|ADC63211.1| anaerobic ribonucleoside-triphosphate reductase [Allochromatium
           vinosum DSM 180]
          Length = 683

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
                 +V+KR+G    FD  KI  AI +A  A  G+  +    +      L  Q +  L
Sbjct: 7   SPTPPTRVVKRDGQEVRFDAGKIESAIRRAGQA-SGEFGAAEASL------LAAQAIKVL 59

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                   +  IE IQD VE +L+ + H +  R Y++YRE+ + +R
Sbjct: 60  THRFSDGRLPDIEGIQDVVEQTLIAANHFETARAYIVYREQHNKLR 105


>gi|241761764|ref|ZP_04759850.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|283856392|ref|YP_162760.2| anaerobic ribonucleoside triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373678|gb|EER63238.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|283775391|gb|AAV89649.2| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 672

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  AI KA       GA+           L +Q    +L      
Sbjct: 12  VIKRNGNKVLFDNDKIRIAIEKA-------GAASGEFDHAEAARLAKQAQKVILHRFAD- 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               IE IQD VE  L+ S +    R Y++YRE+RS  R  Q           +
Sbjct: 64  HAPEIEQIQDIVEQVLVSSDYFATARAYIVYREQRSKSRKDQETIVKVESSINE 117


>gi|167754489|ref|ZP_02426616.1| hypothetical protein ALIPUT_02785 [Alistipes putredinis DSM 17216]
 gi|167659114|gb|EDS03244.1| hypothetical protein ALIPUT_02785 [Alistipes putredinis DSM 17216]
          Length = 696

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 34/201 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   +F   KI RAI KAF++V                  T+  +T +L      
Sbjct: 5   IVKRDGTREAFSMEKIQRAIAKAFLSVGSFA--------------TQDVITNILSRVSVT 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH------------SKSD 138
             + +E+IQ+QVE +LM   ++ + + Y+LYR+  ++ R  +              + + 
Sbjct: 51  DGISVEEIQNQVEVALMAERYYTVAKAYMLYRQRHTEDREVRDKLQFLMEYCDASNAATG 110

Query: 139 APIAPKLKIMMDD-----GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
           +       +   +     G L   N  RL   +      L+++  K +  +  + + D  
Sbjct: 111 SKFDANANVENKNMATLIGELPKSNFIRLNRRM--LTDRLKEIYGKELADKYIEMLNDHF 168

Query: 194 SESDLETALIFSSRTLIEKEP 214
              + ET+L     + I   P
Sbjct: 169 IYKNDETSLANYCAS-ITMYP 188


>gi|260752524|ref|YP_003225417.1| anaerobic ribonucleoside triphosphate reductase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258551887|gb|ACV74833.1| anaerobic ribonucleoside-triphosphate reductase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 672

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  KI  AI KA       GA+           L +Q    +L      
Sbjct: 12  VIKRNGNKVLFDNDKIRIAIEKA-------GAASGEFDHAEAARLAKQAQKVILHRFAD- 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               IE IQD VE  L+ S +    R Y++YRE+RS  R  Q           +
Sbjct: 64  HAPEIEQIQDIVEQVLVSSDYFATARAYIVYREQRSKSRKDQETIVKVESSINE 117


>gi|225569137|ref|ZP_03778162.1| hypothetical protein CLOHYLEM_05217 [Clostridium hylemonae DSM
           15053]
 gi|225161936|gb|EEG74555.1| hypothetical protein CLOHYLEM_05217 [Clostridium hylemonae DSM
           15053]
          Length = 788

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +  FD +KIS AI KAF A E +        QDII  L  +         K
Sbjct: 2   YQVTKRDGQIAKFDITKISEAISKAFAAQEKEYN------QDIIDLLALKVTADFEPKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           ++ +V +EDIQD VE  L+++G+  + + Y+LYR++R  +R   S       I     + 
Sbjct: 56  NS-LVQVEDIQDSVEAVLIKAGYADVAKGYILYRKQREKIRNLNSTMLDYREIVDS-YVK 113

Query: 149 MDD 151
           + D
Sbjct: 114 VTD 116


>gi|160941957|ref|ZP_02089280.1| hypothetical protein CLOBOL_06849 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435121|gb|EDP12888.1| hypothetical protein CLOBOL_06849 [Clostridium bolteae ATCC
           BAA-613]
          Length = 806

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KR+G V  F  +KI+ AI KAF A             +I++ L+ +         K
Sbjct: 2   IQVVKRDGEVAEFSLNKITEAIKKAFRATSKDYN------NEILELLSLRVTADFQNKMK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S       +     + 
Sbjct: 56  DGR-ISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNSTILDYKDVVNS-YVK 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116



 Score = 41.8 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA----CSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
            ++++  DG +  F+  ++   +++A         +   +++      +  + + +  + 
Sbjct: 1   MIQVVKRDGEVAEFSLNKITEAIKKAFRATSKDYNNEILELLSLRVTADFQNKMKDGRIS 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
              I  S   + ++  Y  V   ++L + +RE
Sbjct: 61  VEEIQDSVEHVLEQTGYTDVAKAYILYRKQRE 92


>gi|31745026|dbj|BAC77641.1| probable anaerobic reductase [Porphyromonas gingivalis]
          Length = 794

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 12/123 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+       +   
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTD-----FARQ-- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+  R  +  +     +   + I 
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKR--TSMKHTMDGIVTIE 113

Query: 149 MDD 151
            +D
Sbjct: 114 KND 116


>gi|160938866|ref|ZP_02086217.1| hypothetical protein CLOBOL_03760 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437829|gb|EDP15589.1| hypothetical protein CLOBOL_03760 [Clostridium bolteae ATCC
           BAA-613]
          Length = 690

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    F   KI+ AI KAF A      +      DII+ L+ +  +      K +
Sbjct: 4   VAKRDGETVEFQLDKITLAIKKAFKATGKSYTA------DIIELLSLRVTSDFQMKIKDS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE  L +SG+  + + Y+LYR++R  +R           +     + ++
Sbjct: 58  R-ISVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRNLDKTILDYKDVVDN-YVKVE 115

Query: 151 D 151
           D
Sbjct: 116 D 116



 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            L +   DG  + F   ++ + +++A        +  ++         +    + +S + 
Sbjct: 1   MLLVAKRDGETVEFQLDKITLAIKKAFKATGKSYTADIIELLSLRVTSDFQMKIKDSRIS 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
              I  S   + +E  Y  V   ++L + +RE +  + K             Y +    Y
Sbjct: 61  VEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRNLDKTILD---------YKDVVDNY 111

Query: 260 IEEG 263
           ++  
Sbjct: 112 VKVE 115


>gi|332654657|ref|ZP_08420400.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332516621|gb|EGJ46227.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 793

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G   +F+  KIS AI KAF A++ +          +I  L  +         +
Sbjct: 2   YQVTKRDGTAATFEIGKISAAITKAFQALDKQFHPS------VIDLLALRVTADFEPKVR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               + +EDIQD VE  L ++G+  + + Y+LYR++R  +R   S   +   +   
Sbjct: 56  DGR-IAVEDIQDSVEAVLSEAGYSDVAKAYILYRKQREKIRNVNSALLNYKDLVDD 110


>gi|310659559|ref|YP_003937280.1| ribonucleoside-triphosphate reductase [Clostridium sticklandii DSM
           519]
 gi|308826337|emb|CBH22375.1| Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Clostridium sticklandii]
          Length = 783

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 102/677 (15%), Positives = 203/677 (29%), Gaps = 97/677 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  FD  KI  AI KA                 +   ++        Q   
Sbjct: 1   MKVEKRDGRIVEFDKIKIKNAIEKAMSETIEGIDEA------LSLMISNGIAEDFEQRR- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
             + V +++IQD VE  LM+S    + + Y++YR E+   R  +   +        +   
Sbjct: 54  --VPVRVDEIQDMVEIMLMESPRKDVAKSYIIYRSEQDKTRPKKQKVEHPLITDEFISPY 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
                          +        L+D+S +    ET +         +  T ++ +S  
Sbjct: 112 KH--KPSPMGELGNFVFYRTYSRYLKDISRREYWWETVRR------AVEYNTGIVKTSAE 163

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
             +K           L + +   +   +  +     + E+   YP        E + +  
Sbjct: 164 EAQK-----------LFDNIF-NLRQFLSGRTFWIGNTEVSKYYPMANYNCAFEIIDSLE 211

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328
             + +    ++     ++  +D       ++  Y    +H + + IE P       ++  
Sbjct: 212 SFKDLFYLLMIGAGVGVRVLKDDVKSIPKIRTDYK--LIHKDYTPIE-PNDRMENTSLKF 268

Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388
             ++  +          + S  F  +  +  +       +      +       +     
Sbjct: 269 VSEDEVEIIVGDSKEGWVQSLEFFFNLLSGHDYRKVKTIIMD---YSNVRKKGEMLRTFG 325

Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448
             A        +      V    A        +   I  L +AN     V  GG R+ A 
Sbjct: 326 GTASGHDSLKQMFIKIDKVIHKKAISLNHKRVNLEPIDCLDIANIIGENVVVGGVRRTAE 385

Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508
              ++    D +  +D +                          + Q+  WT+       
Sbjct: 386 MVIID---QDDKTCIDAKSKL----------------------YIQQDGQWTIDQS---- 416

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
                             RQ     I   +K  +    R  L  +  +G P     +   
Sbjct: 417 ---------------ISHRQMSNNSIYYTKK-PSREQLRWQLEKMRYSGEPGFINAEAAI 460

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-DYDKLASTIRT 627
            R P  +       N C EI L++      +CNL +IN  A    +   D + L    R 
Sbjct: 461 KRRPNMNG-----VNPCGEILLDT----KGLCNLTTINAFAFVKEDNTLDLEGLLQAQRL 511

Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687
           + R     + +    + K        + IG  L G+Q  ++ L +            E +
Sbjct: 512 SARAG-YRMTLLELELPKWDMVQQRDKLIGCSLTGWQDMVNALAMTKDEE------RELL 564

Query: 688 EFISFHAISASVELAQE 704
             +   A  A+ + A+E
Sbjct: 565 SKLRDEAHKAANDYAKE 581


>gi|317484305|ref|ZP_07943228.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
 gi|316924449|gb|EFV45612.1| anaerobic ribonucleoside-triphosphate reductase [Bilophila
           wadsworthia 3_1_6]
          Length = 755

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+  +  FD +KI++AI +A  +  GK    S+++         + + RL       
Sbjct: 5   IRKRDARIVPFDVNKIAQAIFRAASSQGGKDYVLSLKI-------AAEVLERL-NEQFED 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE +L++SGH +  + Y+LYR +R+ +R   +   +            +
Sbjct: 57  AVPDVEQVQDLVEKTLIKSGHARTAKAYILYRHQRTKIREMNTRLMTTIRDLTFKDAKDN 116

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 117 DLKRENANID 126


>gi|188995260|ref|YP_001929512.1| anaerobic ribonucleoside triphosphate reductase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594940|dbj|BAG33915.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 798

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 12/123 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+       +   
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTD-----FARQ-- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+  R  +  +     +   + I 
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKR--TSMKHTMDGIVTIE 113

Query: 149 MDD 151
            +D
Sbjct: 114 KND 116


>gi|167772499|ref|ZP_02444552.1| hypothetical protein ANACOL_03877 [Anaerotruncus colihominis DSM
           17241]
 gi|167665602|gb|EDS09732.1| hypothetical protein ANACOL_03877 [Anaerotruncus colihominis DSM
           17241]
          Length = 804

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 13/192 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    FD  KI+ AI KA  A+ G          ++ K L  Q     L      
Sbjct: 36  IIKRDGRCVLFDADKIASAIFKAAQALGGN-------DYEMAKALAGQV-ASYLDEQYGD 87

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E IQD VE +L++SGH +  +EY+LYR +R+ VR   +                +
Sbjct: 88  ESPSVEQIQDAVERTLVESGHARTAKEYILYRAQRTRVRDMGTRLMKTYEELTYKSADEN 147

Query: 151 DGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYKNMY-DG-LSESDLETALIFS 205
           D    + N      +  +++    G +      VL+  +   + DG +   DL+   + +
Sbjct: 148 DIKRENANIDGDTAMGTMLKYGSEGAKQFYHMFVLNPVHSKAHLDGDIHIHDLDFLTLTT 207

Query: 206 SRTLIEKEPNYA 217
           +   I+ E  + 
Sbjct: 208 TCCQIDIEKLFD 219


>gi|283852324|ref|ZP_06369595.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
 gi|283572281|gb|EFC20270.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
          Length = 728

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
             VN         +A P        ++ KR+G + +F+  KI  AI +A       GA+ 
Sbjct: 12  TSVNDNAPGLAAPVAPPRIAIAVPTRIRKRDGTIVAFNADKIRSAISRA-------GAAT 64

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
                D    LT Q +  L     +  I  IE IQD VE +L+ + H +  R Y +YR +
Sbjct: 65  GDFGDDEALLLTAQVMKVLSHRF-AGQIPDIERIQDVVEQALISANHFRTMRAYSIYRAQ 123

Query: 125 RSDVRAAQSHSKSDAPIAPK 144
           R+ +R  +      A    +
Sbjct: 124 RARLREDKKTVVDVAASVNE 143


>gi|239616932|ref|YP_002940254.1| anaerobic ribonucleoside-triphosphate reductase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505763|gb|ACR79250.1| anaerobic ribonucleoside-triphosphate reductase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 717

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 7/113 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G +  F+ SKI  A+ KAF A +      +    DI++ L  +  +      K  
Sbjct: 4   VRKRDGSLVEFELSKIILAVKKAFEATD------TAYTDDILERLALRVTSDFQGKIKEN 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            IV IEDIQD VE +L   G +K+ + Y+LYR++R  +R  +S     A    
Sbjct: 58  -IVDIEDIQDSVEKTLEDLGFNKVAKAYILYRKQREKLRNLKSSMLDFAKTVN 109


>gi|34540965|ref|NP_905444.1| anaerobic ribonucleoside triphosphate reductase [Porphyromonas
           gingivalis W83]
 gi|34397280|gb|AAQ66343.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Porphyromonas gingivalis W83]
          Length = 798

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 12/123 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G V SFDP KI +AI+KA+ A  G     + R+ +I++++T+       +   
Sbjct: 6   LRIVKRDGHVQSFDPEKIRQAIIKAYRA--GGVHEEAARIDNIVQSVTD-----FARQ-- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S  +V +E IQD+VE  LM+     I ++Y++YRE R+  R  +  +     +   + I 
Sbjct: 57  SGELVTVEQIQDRVEEELMRLNPF-IAKKYIIYREWRTVERDKR--TSMKHTMDGIVTIE 113

Query: 149 MDD 151
            +D
Sbjct: 114 KND 116


>gi|218459308|ref|ZP_03499399.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           Kim 5]
          Length = 302

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 122/304 (40%), Gaps = 25/304 (8%)

Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRG 532
           R   ++    +PD+  +    N    LFSP +V  ++            Y      A   
Sbjct: 2   RIKTLSLGVVVPDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARIS 61

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-- 590
           +    +KI A   ++ +  + FE+G+P+I F+D  N  +P    G +  SNLC+EI    
Sbjct: 62  K----KKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVS 115

Query: 591 -----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIE 644
                N       +    S NL +       D      TI T++R L  V D+ +  ++ 
Sbjct: 116 EASEYNDDLSYKHLGKDISCNLGSLNIAAAMDSADFGKTIETSIRALTAVSDMSHIASVP 175

Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704
             +K N    AIGLG M     L    I Y S E V+  +     +++HAI AS  LA E
Sbjct: 176 SIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVE 235

Query: 705 RGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKT 755
           RG  +  F+ S +  G +         +          D+  ++  ++  W  LK  V T
Sbjct: 236 RGTRFKGFENSKYASGDYFDKYTEQEWKPATEKVQALFDKSGIHIPTQDDWASLKTAVMT 295

Query: 756 IGMR 759
            G+ 
Sbjct: 296 SGLY 299


>gi|220928152|ref|YP_002505061.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           cellulolyticum H10]
 gi|219998480|gb|ACL75081.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulolyticum H10]
          Length = 769

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI KA  A  G       +       L E  V  +      
Sbjct: 4   KIRKRDGREVPFNIEKIANAIFKAASATGG-------KDYRTAMELAESVVDFIESSL-D 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E+IQD VE  L+++GH K  +E++LYR +R+ VR   +                
Sbjct: 56  RKVPSVEEIQDAVEKVLIETGHAKTAKEFILYRADRTKVREMNTRLMKVYEELTFKDAKD 115

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 116 NDLKRENANID 126


>gi|82548289|gb|ABB82980.1| ribonucleotide reductase alpha subunit [uncultured organism
           HF70_19B12]
          Length = 652

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 23/260 (8%)

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
            + N +  +P+ FM  +  +  W L+   E+                      +  E   
Sbjct: 414 QNSNNSVRVPNSFMDALENDGIWNLYHRTELKR-----------------ANEEGREPSP 456

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            R + A  LW K+    +    P + F    N        G ++ SN C+E        +
Sbjct: 457 CRSMPAKELWDKVAYTAWACADPGVQFDTTINEWHTCPEGGRINGSNPCSEYMF----LD 512

Query: 597 TAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL SINLL +F     +FD      ++R     L+  + +     E+  + ++ +R
Sbjct: 513 DTACNLASINLLHYFDTGTQKFDVASFQHSVRLWTITLEVSVLMAQFPSEQIARKSYEYR 572

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            +GLG     S L  + +PYA   A  +       +   + + S ELA   G +  ++ +
Sbjct: 573 TLGLGYCNLGSLLMHMGLPYADDRAYAVCGALTSIMCGESYATSAELAGALGPFPKYEEN 632

Query: 715 LWDQGVFPIDSIGLLAEVRD 734
                    +      + + 
Sbjct: 633 ADHMLRVMRNHKRAAYDSKG 652


>gi|167948702|ref|ZP_02535776.1| anaerobic ribonucleoside triphosphate reductase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 436

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+G    FD  KI  AI  A       G +         + LT Q +  L      
Sbjct: 15  KVRKRDGSEVDFDLDKIRTAIRLA-------GQASGEYEDAEAQLLTAQVLKVLTHTGYR 67

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +  IE IQD VE  L+ S H K  R Y++YRE+   +R  + 
Sbjct: 68  EHVPDIERIQDIVEQVLISSNHLKTARAYIVYREQHKKLREDRR 111


>gi|57867420|ref|YP_189078.1| truncated ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|57638078|gb|AAW54866.1| truncated ribonucleoside-diphosphate reductase 2, alpha subunit
           [Staphylococcus epidermidis RP62A]
          Length = 969

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 151/373 (40%), Gaps = 21/373 (5%)

Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276
            K   +  LE + +        +  +  +   +  Y + F  Y EE +            
Sbjct: 25  DKEAIKLYLEHI-KSKTKQFSNQIARLRYLVEEDYYIDVFKDYSEETL------------ 71

Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETE 334
            L  L     +  +F   ++     YD Y L        +E  +   + V++ LA  +  
Sbjct: 72  -LELLDYAYSFGFEFQ-SFMAASKFYDTYALKTRDKSQWLEDFEQHNVIVSLYLAGGD-- 127

Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393
               A  +    +      +TPT  N+   +  +L+SC+L T+ D L  I     + +  
Sbjct: 128 -VDLAKRYIKAHTLQTVQTATPTYLNAGRKQRGELASCYLFTMDDTLNSINFIRSQVSQA 186

Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453
           +K +GG+  + T +RG GA + G     +G++P  K+        +Q G+R GA  AYL 
Sbjct: 187 SKIAGGVAVNLTRLRGRGATLKGVKNVGKGIVPVAKLIEGEVSYADQLGQRAGAGAAYLN 246

Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513
            +H DV E L+ +K   D+  R   ++    +P LF     ++    +F P  + +    
Sbjct: 247 IFHSDVIELLNTKKVNADEDTRLATLSIGLIVPSLFFDLAKEDKDLYMFEPYSIQEEFGK 306

Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
                +I   ++  +    E  +  KI+A  +   +  +  ++G+P+I +KD  N     
Sbjct: 307 DVILDDININDWYDKFVENENVIKHKINAREMLNLIAQIQLQSGYPYIMYKDNANKNHAL 366

Query: 574 QHVGVVHSSNLCT 586
             +G +  SNLC 
Sbjct: 367 NELGEIKMSNLCV 379



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 90/256 (35%), Gaps = 31/256 (12%)

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
           A+  EIK   K       ++    L   G         C       HV  +       + 
Sbjct: 728 AEITEIKYIGKEDVYDTTQEDYHSLIFNG----IVTGNCTEIFQYMHVSDIK------DY 777

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD-NVIDINCHTIEKAK 647
                  +  +CNL S+N++      +        +IRT +R L     +     +    
Sbjct: 778 YEPDELGQDIICNLASLNMVKSIEEKEI-----EESIRTGMRALTFVANNSRIEHLPTVH 832

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RG 706
           K+N  +RA+GLG+M F S      I Y S E++++ +     + ++++  S+++A E   
Sbjct: 833 KANKNNRAVGLGVMSFHSMCAKNKIRYGSEESLDLLNVYCMMMDYYSLDESMKIAVERND 892

Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS--------------RLPWDELKKR 752
            +  F  + +                R    +   +              +  W  L + 
Sbjct: 893 KFYGFDQTDYKAKDGKEFGEYFYKNNRVTKNVEPITPKVKEIFKGIYIPTKEDWQRLARE 952

Query: 753 VKTIGMRNSNCMAIAP 768
           V   G+ NS  ++IAP
Sbjct: 953 VDKNGLYNSYRLSIAP 968


>gi|325265173|ref|ZP_08131899.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
 gi|324029577|gb|EGB90866.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
          Length = 788

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +  FD +KI  AI KAF A E +        QDII  L  +         K
Sbjct: 2   YQVTKRDGKIADFDLAKICEAIRKAFEARERQYN------QDIIDLLALKVTADFEPKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +V +ED+QD VE  L+++G+  + + Y+LYR++R  +R   S       I     + 
Sbjct: 56  KG-LVSVEDVQDSVESVLIKAGYADVAKGYILYRKQREKIRNLNSTLLDYKEIVDS-YVK 113

Query: 149 MDD 151
           + D
Sbjct: 114 ITD 116


>gi|301061755|ref|ZP_07202495.1| ATP cone domain protein [delta proteobacterium NaphS2]
 gi|300444143|gb|EFK08168.1| ATP cone domain protein [delta proteobacterium NaphS2]
          Length = 302

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 17/159 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVE--GKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++ KR+G +  F+ SKI  AI KA  A    G  A++S         LT + + +    +
Sbjct: 4   KIKKRDGEIVPFNDSKIRAAIFKAGKATGEFGGQAAKS---------LTRRVLKK-AHKS 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD--APIAPKL 145
               I  +E+IQD VE  L ++  +K  + YV+YR + + +R   + S  D        L
Sbjct: 54  GIGPIPEVEEIQDIVERVLFEADFYKTAKAYVIYRHQHARIRDILNKSNFDLVENYLQNL 113

Query: 146 KIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIV 181
              + + + ++++ + L   +         L  +    +
Sbjct: 114 DWKIHENSNMTYSLQGLNNRISSHVSSEYWLNCIYPPEI 152


>gi|212702235|ref|ZP_03310363.1| hypothetical protein DESPIG_00246 [Desulfovibrio piger ATCC 29098]
 gi|212674361|gb|EEB34844.1| hypothetical protein DESPIG_00246 [Desulfovibrio piger ATCC 29098]
          Length = 756

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD  KI  AI KA           S         L      ++ +  ++ 
Sbjct: 10  IIKRDGTEVAFDSVKILNAITKA--------NKASGEDMSPTDLLF--VTEKVCRKLEAQ 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            + H+E+IQD VE +L+Q  + K  + Y+LYR E +  R A+S+             + +
Sbjct: 60  NLRHVEEIQDVVEETLIQYDYAKTAKAYILYRAEHTKRRNAESYLMEIYKTLTYAPAIEE 119

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 120 DIKRENANID 129


>gi|302386874|ref|YP_003822696.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197502|gb|ADL05073.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 788

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KRNG    F  +KI+ AI KAF A + +         +I++ L+ +          
Sbjct: 2   IQVVKRNGESAEFSLNKITEAIKKAFKATQKEYN------NEILELLSLRVTADFQGKM- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           S   V +E IQD VE  L Q+G+  + + Y+LYR++R  +R  +        +     + 
Sbjct: 55  SGGQVTVEQIQDSVEHVLEQAGYTDVAKAYILYRKQREKIRNMKDTILDYKAVVNS-YVK 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116


>gi|154505221|ref|ZP_02041959.1| hypothetical protein RUMGNA_02734 [Ruminococcus gnavus ATCC 29149]
 gi|153794419|gb|EDN76839.1| hypothetical protein RUMGNA_02734 [Ruminococcus gnavus ATCC 29149]
          Length = 792

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +T F+ +KIS AI KAF A E +        QDII  L  +         K
Sbjct: 2   YQVTKRDGEITEFNLTKISEAIRKAFEAREKEYN------QDIIDLLALKVTADFEPKIK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + +EDIQD VE  L+++G+  + + Y+LYR++R  +R   S       I     + 
Sbjct: 56  E-HKIAVEDIQDSVESVLIKAGYADVAKGYILYRKQREKIRNLNSTLLDYKEIVDS-YVK 113

Query: 149 MDD 151
           + D
Sbjct: 114 VTD 116



 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETA 201
           ++   DG +  FN  ++   + +A    +   ++ ++     +   +    + E  +   
Sbjct: 3   QVTKRDGEITEFNLTKISEAIRKAFEAREKEYNQDIIDLLALKVTADFEPKIKEHKIAVE 62

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
            I  S   +  +  YA V   ++L + +RE +  +        + E+   Y +
Sbjct: 63  DIQDSVESVLIKAGYADVAKGYILYRKQREKIRNL--NSTLLDYKEIVDSYVK 113


>gi|83592612|ref|YP_426364.1| anaerobic ribonucleoside triphosphate reductase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575526|gb|ABC22077.1| ATP-cone [Rhodospirillum rubrum ATCC 11170]
          Length = 673

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P +  P P       V+KR+G    FD  KI  AI +A       G +         + L
Sbjct: 3   PEIVSPPPG------VVKRSGRTVPFDAVKIRSAIERA-------GKATGDFDPIEAQLL 49

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             Q V  L          HIE IQD VE  L+ + H    R Y++YRE+ + +R  +   
Sbjct: 50  AIQAVKVLSHRFTEDA-PHIEQIQDVVEQVLISANHFATARAYIVYREQHARLRIDRKTV 108

Query: 136 KSDAPIAPK 144
                   +
Sbjct: 109 VDVESSINE 117


>gi|189346576|ref|YP_001943105.1| anaerobic ribonucleoside triphosphate reductase [Chlorobium
           limicola DSM 245]
 gi|189340723|gb|ACD90126.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           limicola DSM 245]
          Length = 721

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 14/173 (8%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P  +   +VIKR+G    FD  KI  A+ +A  AV           +     + +  + +
Sbjct: 3   PHTMVCREVIKRDGRKVPFDAEKIVYAVFRALRAV-------GRADRAKAAVIADDAIRQ 55

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           L     +  +  +EDIQD  E SL         + Y++YR +   +R A+    +   + 
Sbjct: 56  LYNPC-AGTVPSVEDIQDMAEKSLFLHREFDAAKAYIIYRHQHQYMREAKEMFSNIDVVD 114

Query: 143 PKLKI---MMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNM 189
             L I    + +    S++ + L   +     A   L  +    +       +
Sbjct: 115 SYLDIEDWRVRESANSSWSLQGLNQHISTLVSAQYWLNRIYPPEISDAHTSGL 167


>gi|303249443|ref|ZP_07335662.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
 gi|302489154|gb|EFL49127.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
          Length = 724

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 11/147 (7%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIK---GVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57
           + P    +   +    S   P   ++      ++ KR+G V  FD  KI  AI +A    
Sbjct: 2   LEPMTSSDLAFDTLEQSAEQPASARVAVAVPARIKKRDGKVVPFDADKIFSAIRRA---- 57

Query: 58  EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117
              GA+     +   + LT Q V  L     +  I  IE IQD VE +L+ + H +  R 
Sbjct: 58  ---GAATGDFDESEARLLTAQAVKVLSHRF-AGQIPDIERIQDVVEQALISANHFRTMRA 113

Query: 118 YVLYREERSDVRAAQSHSKSDAPIAPK 144
           Y +YRE+R+ +R  +      A    +
Sbjct: 114 YSVYREQRAKLRHDKKTVVDVAASINE 140


>gi|206896391|ref|YP_002246379.1| anaerobic ribonucleoside-triphosphate reductase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739008|gb|ACI18086.1| anaerobic ribonucleoside-triphosphate reductase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 696

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  F+  KI+ AI KA       G +     +D+ + L  + V  + Q     
Sbjct: 5   IRKRDGRIVPFEAEKITNAIAKA-------GQATGEFDRDVAQKLMIKVVN-VAQTVIKE 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            I  +E IQD VE  L+ S + K  + Y++YRE+ + +R   S + SD
Sbjct: 57  EIPSVEQIQDIVEEVLLDSPYRKTAKAYIIYREDHAKMREIVSKANSD 104


>gi|227824829|ref|ZP_03989661.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905328|gb|EEH91246.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 713

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 23/169 (13%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
              G+QVIKR+G   SFD  KI  AI KA  AVE         +  I   +  +   R L
Sbjct: 2   SAMGMQVIKRDGSTVSFDRHKIVVAIQKANKAVEEGERLPESDIDTIASFVEGKKRKRFL 61

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                     +EDIQD VE  +M  G +++ + Y++YR  R+ VR A   + +D  I   
Sbjct: 62  ----------VEDIQDMVEKQIMNRGRYELAKAYIIYRYNRALVRKA---NTTDESILSL 108

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
           +     D    + N   + +  +            ++  E  +++   +
Sbjct: 109 ISNKNKDVMEENSNKNAVMVSTQR----------DLIAGEVSRDLTRRI 147


>gi|260888087|ref|ZP_05899350.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|330839966|ref|YP_004414546.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|260862116|gb|EEX76616.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
 gi|329747730|gb|AEC01087.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           sputigena ATCC 35185]
          Length = 777

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR G +  FD  KI+ AI KA        +      Q  ++ LT+  + R+      
Sbjct: 4   NIQKRTGQIVPFDAEKITDAIRKA-----NLESIDETFSQHQLEKLTKSVIHRIE----G 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E IQD VE +L+++      + Y+LYR E + +R A+             +   
Sbjct: 55  EETPAVEFIQDAVEKALIKNNFASTAKAYILYRAEHAKIRDAEGDLMDIYNELTFKRAKD 114

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 115 ADIKRENANID 125


>gi|254489544|ref|ZP_05102747.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
 gi|214042051|gb|EEB82691.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseobacter
           sp. GAI101]
          Length = 342

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 131/332 (39%), Gaps = 27/332 (8%)

Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274
           +  ++ AR    +   +     +   +K ++              ++EG     + +   
Sbjct: 22  DADRMAARQYFLQHVNQNTVFFHSLDEKLSY-------------LVDEGYYEAAVLDGYP 68

Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKE 332
              L  +      ++     +LG    Y  Y L        +E  +    RV M      
Sbjct: 69  RAFLHLIWEAAFAQKFRFPTFLGAFKYYTSYTLKTRDGNRFLERYED---RVVMTALTLA 125

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391
              + +A+ F + + S  F  +TPT  N+G +   +L SCFL  + D++  I   +    
Sbjct: 126 RGDQVQAMAFMHEILSGRFQPATPTFLNAGKQSRGELISCFLLRLEDNMESIGRGINSAL 185

Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451
            L+K  GG+    T +R  GA I G   +S GVIP +K+  D+    NQ G R+GA   Y
Sbjct: 186 QLSKRGGGVALMLTNIREQGAPIKGIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVY 245

Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511
           L   H D+  FLD ++   D++ R   ++    IPD+  +   +N    LFSP +V    
Sbjct: 246 LNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPHDV---E 302

Query: 512 DLYGKEFE-----IAYENYERQADRGEIKVFR 538
            +YG  F        Y          + +  R
Sbjct: 303 RVYGLPFSDISVTEKYAEMVDNKTHPQKEDKR 334


>gi|187251595|ref|YP_001876077.1| anaerobic ribonucleoside triphosphate reductase [Elusimicrobium
           minutum Pei191]
 gi|186971755|gb|ACC98740.1| Anaerobic ribonucleoside-triphosphate reductase [Elusimicrobium
           minutum Pei191]
          Length = 690

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G    FD +KI++AI KA       G       +D+   LT + +  ++Q   S
Sbjct: 9   NIVKRDGTKQKFDAAKITKAISKA-------GQVTGEFGEDVASKLTIRVIN-IIQQLYS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             +  +E+IQD VE  L+ S +HK  + Y++YRE+ S +R   S    D
Sbjct: 61  DSVPTVENIQDIVEDVLLTSNYHKTAKSYIIYREQHSKIREIHSKFNVD 109



 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 52/155 (33%), Gaps = 33/155 (21%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIV-LSETYKNMY-DGLSESDL 198
            I+  DGT   F++ ++   + +A       G    S   + +    + +Y D +   + 
Sbjct: 9   NIVKRDGTKQKFDAAKITKAISKAGQVTGEFGEDVASKLTIRVINIIQQLYSDSVPTVEN 68

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258
              ++                    L     +   + +  + Q   H +++ ++ ++   
Sbjct: 69  IQDIVEDV----------------LLTSNYHKTAKSYIIYREQ---HSKIREIHSKFNVD 109

Query: 259 YIEEGVKARLLHESMMD-----FDLVYLANDLKYE 288
            +E+    + +   + +     + L  L N +  E
Sbjct: 110 LVEQ--YLKKMDWQVNENSNMSYSLQGLNNYISSE 142


>gi|169349534|ref|ZP_02866472.1| hypothetical protein CLOSPI_00261 [Clostridium spiroforme DSM 1552]
 gi|169293609|gb|EDS75742.1| hypothetical protein CLOSPI_00261 [Clostridium spiroforme DSM 1552]
          Length = 742

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G +  F+  KI+ AI KAF       A  S        ++ ++    L +    
Sbjct: 4   NIRKRDGRLVPFELDKIAGAIYKAF------QACSSKYELKTALDIAKKVEKNLEKKQS- 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E +QD VE  L++ G  ++ + Y+LYR  R+  R  +S            +   
Sbjct: 57  -ALPTVELVQDTVEEVLIEQGFVRVAKAYILYRANRTRERDMRSRLMKTFEEITFSESKN 115

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 116 SDLKRENANVN 126


>gi|260889746|ref|ZP_05901009.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
 gi|260860352|gb|EEX74852.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Leptotrichia
           hofstadii F0254]
          Length = 342

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 130/316 (41%), Gaps = 7/316 (2%)

Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285
            +L ++              + +     E    Y+ +       +E     ++  +   +
Sbjct: 24  FQLEKDKEAVYSYFVDYVNKNTVFFHNLEEKMGYLIKNDYYIDFYEMYSHDEIKEVFKLV 83

Query: 286 KYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343
             ++     ++     Y  Y          +E  +    R+A           ++A E+ 
Sbjct: 84  YDKKFRFASFMSASKFYQSYALMDDTGEKFLERYED---RIATVSLYLAQGNVEKAKEYA 140

Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402
            +L +  +  +TPT  NSG +   +L SCFL  + D+L GI      +  L+   GG+  
Sbjct: 141 LMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSGIGYVFDSSMKLSSIGGGVSI 200

Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462
           + + VR  G  I G  G++ GV+P +K+  D     NQ G+R GA   YL  +H D+ EF
Sbjct: 201 NLSKVRARGESIKGVEGRASGVLPIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDINEF 260

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522
           LD +K   D++ R   ++    +PD FM+   ++     F+P  V   +  Y  E +   
Sbjct: 261 LDSKKINVDEKIRIKSLSIGVIVPDKFMQLAMEDEVCYTFNPHTVFLEYGQYLDEMD-MN 319

Query: 523 ENYERQADRGEIKVFR 538
           E YE+  D   +K  +
Sbjct: 320 EMYEKLVDNPNVKKKK 335


>gi|160878693|ref|YP_001557661.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160427359|gb|ABX40922.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 800

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G +  F  SKIS AI KAF A +          +DII  L+ +  +      K
Sbjct: 2   IKVVKRDGEIAEFALSKISSAIAKAFNATQKLYN------EDIINLLSLRVTSDFQTKLK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
            +  V +EDIQD VE  L QSG+  + + Y+LYR+ R  +R  +S       I   + + 
Sbjct: 56  DS-TVTVEDIQDSVEHVLEQSGYTDVAKAYILYRKNREKIRNMKSTILDYKEIVD-MYVK 113

Query: 149 MDD 151
            +D
Sbjct: 114 EED 116


>gi|317472001|ref|ZP_07931333.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900405|gb|EFV22387.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 794

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KIS AI +AF A E +          +I  L  +  +      K+ 
Sbjct: 4   VIKRDGTKAEFDIQKISTAITRAFEAKEKQYHPS------VIDLLALKVTSDFEPKVKND 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            ++ +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S       +     +   
Sbjct: 58  -VIAVEDIQDSVESVLIQAGYADVAKGYILYRKQREKIRNMKSTILDYKELVDS-YVKAS 115

Query: 151 D 151
           D
Sbjct: 116 D 116


>gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
 gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
          Length = 429

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 22  FPEKIKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           F       Q V+KR+G V  FD  +I RA+ KA        A+       +I+    Q +
Sbjct: 325 FEGLAPEYQPVVKRDGRVVPFDELRIVRAVEKA------GAATGVALDPGVIER---QVL 375

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
             + +  +    +HIE+IQ+ VE  LM+S +  + R Y+LYREER+  R  Q
Sbjct: 376 GPIKRKARQQR-LHIEEIQNLVEEGLMKS-YPAVARAYILYREERAKARRDQ 425


>gi|158522580|ref|YP_001530450.1| anaerobic ribonucleoside triphosphate reductase [Desulfococcus
           oleovorans Hxd3]
 gi|158511406|gb|ABW68373.1| anaerobic ribonucleoside-triphosphate reductase [Desulfococcus
           oleovorans Hxd3]
          Length = 730

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +T+FD  KI+ AI K+       G +         K LT + +  L    K  
Sbjct: 5   IKKRDGRITTFDSKKITEAIAKS-------GKATGEFDGREAKKLTLRVL-TLASQMKLG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR--AAQSHSKSDAPIAPKLKIM 148
            +  +E+IQD VE  L+ S  +K  + Y+LYRE+ + +R  A ++  K       K+   
Sbjct: 57  PVPEVEEIQDIVERVLLDSPFYKSAKSYILYREQHTQIRNIATKASVKLVENYIGKMDWK 116

Query: 149 MDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIV 181
           + + + +S++ + L   +     A   L  V    V
Sbjct: 117 IKENSNMSYSLQGLNNYISSDVTAEYWLNRVYPPEV 152


>gi|219666419|ref|YP_002456854.1| anaerobic ribonucleoside triphosphate reductase [Desulfitobacterium
           hafniense DCB-2]
 gi|219536679|gb|ACL18418.1| anaerobic ribonucleoside-triphosphate reductase [Desulfitobacterium
           hafniense DCB-2]
          Length = 789

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI KA  A  GK    S+        L E+ V  L  +   
Sbjct: 4   KIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSLL-------LAEEVVNYLEVNLHK 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E+IQD VE  L++ GH +  +E++LYR ER+ VR   +            +   
Sbjct: 57  -KVPSVEEIQDAVEKILIERGHARTAKEFILYRAERTRVREMDTRLMKVYEELTFKEAKD 115

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 116 NDMKRENANID 126


>gi|326204794|ref|ZP_08194648.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985006|gb|EGD45848.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           papyrosolvens DSM 2782]
          Length = 770

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI KA  A  GK         ++ + + +   + L +   S
Sbjct: 4   KIRKRDGREVPFNIEKIANAIFKAASATGGKDY---RTAMELAERVADFIESSLDRRIPS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E++QD VE  L+++GH K  +E++LYR +R+ VR   +                
Sbjct: 61  -----VEELQDAVEKVLIETGHAKTAKEFILYRADRTKVREMNTRLMKVYEELTFKDAKD 115

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 116 NDLKRENANID 126


>gi|167748467|ref|ZP_02420594.1| hypothetical protein ANACAC_03211 [Anaerostipes caccae DSM 14662]
 gi|167652459|gb|EDR96588.1| hypothetical protein ANACAC_03211 [Anaerostipes caccae DSM 14662]
          Length = 794

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  KIS AI +AF A E +          +I  L  +  +      K+ 
Sbjct: 4   VIKRDGTKAEFDIQKISTAITRAFEAKEKQYHPS------VIDLLALKVTSDFEPKVKND 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            ++ +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S       +     +   
Sbjct: 58  -VIAVEDIQDSVESVLIQAGYADVAKGYILYRKQREKIRNMKSTILDYKELVDS-YVKAS 115

Query: 151 D 151
           D
Sbjct: 116 D 116


>gi|154496758|ref|ZP_02035454.1| hypothetical protein BACCAP_01051 [Bacteroides capillosus ATCC
           29799]
 gi|150274010|gb|EDN01110.1| hypothetical protein BACCAP_01051 [Bacteroides capillosus ATCC
           29799]
          Length = 773

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  FD  KI  AI +AF A    G   + R       L ++ ++ L    +  
Sbjct: 6   IRKRDGRLMPFDEEKIVHAIARAFNATYKPGHEDTAR------KLADEVLSIL--EVEGN 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E IQD VE  LM  G+ +  + Y+LYR +RS VR   +                 
Sbjct: 58  QQPDVEHIQDLVERVLMDDGYIQTAKAYILYRSDRSRVREMNTRLMKIYEDITFSAAKDS 117

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 118 DIKRENANID 127


>gi|210615495|ref|ZP_03290622.1| hypothetical protein CLONEX_02838 [Clostridium nexile DSM 1787]
 gi|210150344|gb|EEA81353.1| hypothetical protein CLONEX_02838 [Clostridium nexile DSM 1787]
          Length = 788

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            QV KR+G +T F   KI  AI KAF A E           DII  L  +         +
Sbjct: 2   YQVTKRDGKITDFHLKKIVAAITKAFEAQEKAIHP------DIIDMLALKVTADFEPKIQ 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
              ++ +EDIQD VE  L+QSG+  + + Y+LYR++R  +R  +S       I  
Sbjct: 56  EN-LIRVEDIQDSVESVLIQSGYGDVAKGYILYRKQREKIRNMKSTVLDYKEIVD 109


>gi|299145838|ref|ZP_07038906.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298516329|gb|EFI40210.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 733

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 11/108 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR G +  FD  KI  AI KAF + + +     +   D   +LT            
Sbjct: 1   MKVQKRTGQIVDFDLEKIGNAIKKAFDSKQVEYDPAIVESVDKSISLT-----------Y 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           + + V +E IQD VE +LMQ G++ I + ++LYRE+R   R  +    
Sbjct: 50  TNVPVSVETIQDYVERALMQFGYYDIAKTFILYREQRKSTRFVKERID 97


>gi|331085611|ref|ZP_08334695.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330407498|gb|EGG87000.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 761

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G V  +D SKI+ AI+KA  A     A+          N+     ++L +     
Sbjct: 5   IIKRDGRVVLYDESKIASAILKAMEAAGEGDATD-------AANVANDVQSKL-EKLPED 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   IE +QD VE +LM+ G  +  ++++LYR +R+ +R A +           +     
Sbjct: 57  MPPQIEQVQDTVERALMKKGFEESAKKFILYRAQRTHIREANTSLMKTIDEITNIDARES 116

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 117 DMKRDNANID 126


>gi|225419681|ref|ZP_03761984.1| hypothetical protein CLOSTASPAR_06019 [Clostridium asparagiforme
           DSM 15981]
 gi|225041666|gb|EEG51912.1| hypothetical protein CLOSTASPAR_06019 [Clostridium asparagiforme
           DSM 15981]
          Length = 256

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F   KI+ AI KAF A +           DI++ L+ +  +   +  +  
Sbjct: 4   VVKRDGEIVEFCLEKITMAIQKAFKATDKFY------TDDILELLSIRVTSDFQKKIQEN 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE  L +SG+  + + Y+LYR++R  +R           +     + ++
Sbjct: 58  R-IAVEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRNLDKTILDYKDVVDS-YVRVE 115

Query: 151 D 151
           D
Sbjct: 116 D 116



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            L ++  DG ++ F  +++ M +++A        +  +L         +    + E+ + 
Sbjct: 1   MLLVVKRDGEIVEFCLEKITMAIQKAFKATDKFYTDDILELLSIRVTSDFQKKIQENRIA 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
              I  S   + +E  Y  V   ++L + +RE +  + K      + ++   Y
Sbjct: 61  VEDIQDSVEKVLEESGYTDVAKAYILYRKQREKIRNLDKTI--LDYKDVVDSY 111


>gi|323141415|ref|ZP_08076306.1| anaerobic ribonucleoside-triphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414164|gb|EFY04992.1| anaerobic ribonucleoside-triphosphate reductase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 708

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 10/103 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI  AI KA  AVE          +D I+ + +   +R      
Sbjct: 1   MKVIKRDGTTVDFDAAKIVVAIQKANAAVE----PEFRIEEDKIQEIADSVQSRNRMRLL 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 +EDIQD VE SLM +G  ++ ++Y++YR +R+ VR A
Sbjct: 57  ------VEDIQDMVEHSLMDAGKFELAKQYIIYRYKRALVRKA 93



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALI 203
           +K++  DGT + F++ ++ + +++A +    V  +  +  +  + + D +   +    L+
Sbjct: 1   MKVIKRDGTTVDFDAAKIVVAIQKANA---AVEPEFRIEEDKIQEIADSVQSRNRMRLLV 57

Query: 204 FSSRTLIE 211
              + ++E
Sbjct: 58  EDIQDMVE 65


>gi|295106152|emb|CBL03695.1| anaerobic ribonucleoside-triphosphate reductase [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 813

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G +  FD +KIS AI KAF A+  +           I  L            +
Sbjct: 2   YEVQKRDGKIAEFDIAKISSAIAKAFDALGKQYHPS------TIDLLALNVTAHFEPKIE 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I+ +ED+QD VE  L  +G+  + + Y+LYR++R  VR A +       +  +  + 
Sbjct: 56  DG-IITVEDVQDSVEEVLSTAGYADVAKSYILYRKQREKVRNAGATLLDYKDLVDQ-YVK 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116


>gi|266625324|ref|ZP_06118259.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862777|gb|EFC95075.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 787

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F  +KI+ AI KAF A +           +I++ L+ +      +  +  
Sbjct: 4   VLKRDGEVAEFSLNKITEAIKKAFKATKKDYN------NEILELLSLRVTADFQEKMRDG 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  L Q+G+  + + Y+LYR++R  +R  ++       +     + ++
Sbjct: 58  Q-ITVEQIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMKNTILDYKDVVNS-YVKVE 115

Query: 151 D 151
           D
Sbjct: 116 D 116



 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/115 (11%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            + ++  DG +  F+  ++   +++A    +   +  +L         +  + + +  + 
Sbjct: 1   MIAVLKRDGEVAEFSLNKITEAIKKAFKATKKDYNNEILELLSLRVTADFQEKMRDGQIT 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
              I  S   + ++  Y  V   ++L   R++       K     + ++   Y +
Sbjct: 61  VEQIQDSVEHVLEQTGYTDVAKAYILY--RKQREKIRNMKNTILDYKDVVNSYVK 113


>gi|51556532|ref|YP_068166.1| rh72 [Macacine herpesvirus 3]
 gi|31377949|gb|AAP50599.1| rh72 [Rhesus cytomegalovirus strain 68-1]
 gi|73695699|gb|AAZ80573.1| rhUL45 [Macacine herpesvirus 3]
          Length = 849

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 111/676 (16%), Positives = 206/676 (30%), Gaps = 80/676 (11%)

Query: 274 MDFDLVYLANDLKYERDF--AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK 331
              DL  +  D+    D    + + G  +L D+    I G   E     F+R++M + L 
Sbjct: 206 HSEDLPKILADITRYLDLAGCWGFYGAIVLTDKVSRQIYGQ-DESLGGIFLRISMAITLA 264

Query: 332 -ETEKEKRAVEFYNLLSSFHFMCSTPTLFN-----SGTRHPQLSSCFL-TTVPDDLYGIF 384
             +    R   F+        +  +          S T     +  F+     D L    
Sbjct: 265 IVSSPCARVYRFHMDCRHECEVLESVVKRCRDGQLSLTPFSMSNIGFVELPQYDYLISCD 324

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
              +E   LA +      + T    L  ++   N ++  VI  +    D           
Sbjct: 325 LYSREVDWLALHKWLYE-NLTRGVSLSINVTRFNVEAISVIRCIGGFCDMIREKEVHRPI 383

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504
                   +   I V  F+    +          ++ A  IP + MKR            
Sbjct: 384 VRIFVDLWDVAAIRVLNFVLKETDII-------GIHYAFNIPSVLMKRYRAQDSHYSLFG 436

Query: 505 DEVSDLHDLYGKEF--EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562
             VS      G EF  E  Y  YE    +        + A    R ML    + G   + 
Sbjct: 437 RTVSRKLSECGNEFAFEKEYVRYETTVPKV------TVKASEFMRNMLFCALK-GKCALV 489

Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH------------ 610
           F       S       +         + +    +  +  L SINL               
Sbjct: 490 FVHHIVKYSVLTGNMPLPPCLGPDMASCHFGESDLPLQRL-SINLTRCLFTRTDDDVLCR 548

Query: 611 ------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT-HRAIGLGLMGF 663
                      FD   L + +  AV   +  +D    + +   +S     R++ +G+ G 
Sbjct: 549 DNVVLGNTRRYFDMQVLRTLVTEAVVWGNARLDALIRSGDWPLESAICKMRSLNIGVTGL 608

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722
            + L  L   Y    + ++ +   E + + A+  SV+L +        F  +++ +G F 
Sbjct: 609 HTVLMRLGFTY--FASWDLIERIFENMYYAALRTSVDLCKSGLPPCEWFDRTIYKEGKFI 666

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
            +        R        ++  W+ L+  ++  G+RN+  ++IA     A +  V+ SI
Sbjct: 667 FELY------RKPHLSLPVAQ--WETLRTEMQEYGVRNAQLLSIAADEETAFLWNVTPSI 718

Query: 783 DPSYQNLYVKSNMSG--------DFTVVNSFLVNELKQRDLW---DEAMISDLKYHDGSI 831
             +   +  +  +           F  V    +        W    + + +      G++
Sbjct: 719 WAARDRIVDEETVLPVSPPSDECYFPTVMQKHLKVPIINYAWIEHHDEVKAKSIT-QGTV 777

Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASR-RQKWIDQAQSLNLYLDEPSGKKLDFIYR 890
              +        +   A E+     +E AS     ++DQ   L  Y +      L     
Sbjct: 778 QRADVPSC----VFQRAAEL-QAD-VEMASVNVSMFVDQCVPLPFYYESSMTPDLLMKRM 831

Query: 891 QAW-LMGLK-TTY-YL 903
             W  +  K   Y Y 
Sbjct: 832 LKWYHLRCKVGVYKYC 847


>gi|167759292|ref|ZP_02431419.1| hypothetical protein CLOSCI_01639 [Clostridium scindens ATCC 35704]
 gi|167663166|gb|EDS07296.1| hypothetical protein CLOSCI_01639 [Clostridium scindens ATCC 35704]
          Length = 784

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G V  F  SKI  AI KAF A E +        QDII  L  +         K + 
Sbjct: 1   MKRDGQVAEFTLSKIGVAIEKAFKAQEKEYN------QDIIDLLALKVTADFEPKIKDS- 53

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
           ++++EDIQD VE  L+++G+  + + Y+LYR++R  +R   S       I     + + D
Sbjct: 54  LINVEDIQDSVEAVLIKAGYADVAKGYILYRKQREKIRNLNSTMLDYKEIVDS-YVKITD 112


>gi|291513995|emb|CBK63205.1| anaerobic ribonucleoside-triphosphate reductase [Alistipes shahii
           WAL 8301]
          Length = 697

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + ++KR+G    F   KI RAI KAF++V G                T+  +T +L 
Sbjct: 3   ISEIYIVKRDGKRAPFSVEKIKRAISKAFLSVGGYA--------------TDDDLTSVLS 48

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +  + +E+IQ+QVE +LM   +  + + Y+LYR++ S+ R  +   +
Sbjct: 49  RVRVSDGMSVEEIQNQVEVALMAERYFAVAKSYMLYRQKHSEDREDREKLE 99



 Score = 44.5 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 54/395 (13%), Positives = 112/395 (28%), Gaps = 35/395 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           ++ I+  DG    F+ ++++  + +A    G       +    +   + DG+S  +++  
Sbjct: 5   EIYIVKRDGKRAPFSVEKIKRAISKAFLSVGGYATDDDLTSVLSRVRVSDGMSVEEIQNQ 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKL----RREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +      + E+   Y  V   ++L +      RE    +                     
Sbjct: 65  V--EVALMAER---YFAVAKSYMLYRQKHSEDREDREKLEFLINYCDAKNPATGSKYDAN 119

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             +E    A L+   +   + + L   L  +R    + +  + L D+Y   +NG  I   
Sbjct: 120 ANVENKNIATLI-GELPKRNFIRLNRRLLTDR---IKEMYGKELSDKYLRLLNGHFIYKN 175

Query: 318 QAFFMR-----VAMGLA--------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
               M      + M              + +      F     +  F+ S+       T 
Sbjct: 176 DETSMANYCASITMYPWLLGGTLSVGGNSTRPTNLKSFCGGFVNMVFIVSSMLSGACATP 235

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW-TPVRGLGAHIHGTNGKSQG 423
              +   +     +     +    E   L+K    +          +   I+   G    
Sbjct: 236 EFLMYMNYFIE-QEYGEDYYTRADEVVDLSKKRRTIDKMITDCFEQIVYSINQPTGARNF 294

Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
              F  VA                        H +   +L  R  T  +R RT  + T  
Sbjct: 295 QAVFWNVAYYDRYYFESLFGEFVFPDGSKP--HWESLSWLQKRFMTWFNRERTKTVLT-- 350

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
             P   M  +T++         + +      G  F
Sbjct: 351 -FPVETMALLTRDGDVMDREWGDFTAEMYAAGHSF 384


>gi|218281041|ref|ZP_03487617.1| hypothetical protein EUBIFOR_00176 [Eubacterium biforme DSM 3989]
 gi|218217690|gb|EEC91228.1| hypothetical protein EUBIFOR_00176 [Eubacterium biforme DSM 3989]
          Length = 652

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  FDPSKI  AI KAF ++  +       +  ++   T     ++ ++  
Sbjct: 2   IEVEKRDGSIVDFDPSKIFSAISKAFDSLHMEKDDA--IINLLVLRATADFQAKIKENR- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               + +E IQD VE +L +SG++ + + Y+LYR++R +VR  QS +     +   
Sbjct: 59  ----ISVEMIQDSVEKTLSESGYYPVAKTYILYRKQRENVRKIQSTANEYIHLVNS 110


>gi|332297833|ref|YP_004439755.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           brennaborense DSM 12168]
 gi|332180936|gb|AEE16624.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           brennaborense DSM 12168]
          Length = 706

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  +D SKIS AI KA  AVE           D  + LT+    RL       
Sbjct: 29  VVKRSGEVEDYDRSKISAAIGKAITAVEK------RPDPDKAEQLTDAVEDRLRLMMAGR 82

Query: 91  L---IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               I  IE+IQD VE  L+++    I + Y+LYR     +R  ++
Sbjct: 83  HEHSIPAIEEIQDIVETVLIENNAVTIAKAYILYRARHEAIRDTKN 128


>gi|255652452|ref|ZP_05399354.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-37x79]
          Length = 741

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G +  FD +KI  AI K+F+++  KG S     +++   + ++   +  +   
Sbjct: 2   LNVIKRDGRIVPFDENKIIDAIEKSFLSLRNKGKSE-AFDRELATLIAKKIKNKPCEKM- 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
                HIEDIQD +E SLM S    + +EY+ YRE+R+  R  +
Sbjct: 60  -----HIEDIQDIIEFSLMASKKKDVAKEYITYREKRNIARGRK 98


>gi|265763466|ref|ZP_06092034.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|263256074|gb|EEZ27420.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
          Length = 733

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 11/108 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR G +  FD  KI  AI KAF + + +     ++  D + +LT            
Sbjct: 1   MKVQKRTGQIVDFDLEKIGNAIKKAFDSKQVEYDPAIVKSVDKLISLT-----------Y 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           + + V +E IQD VE  LMQ G++ I + ++LYRE+R   R  +    
Sbjct: 50  TNVPVSVETIQDYVERVLMQFGYYDIAKTFILYREQRKSTRFVKERID 97


>gi|320537091|ref|ZP_08037066.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           phagedenis F0421]
 gi|320146058|gb|EFW37699.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           phagedenis F0421]
          Length = 702

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 12  EDAFPSLAYPFPEKIKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
            +  P L   F  +   ++ V+KR+G + +F+ +KI+ AI KA        A+      +
Sbjct: 13  PEWKPLLEGGFEREKPFLRSVVKRSGEIQAFNKNKITAAISKA------ITAAEWAENPE 66

Query: 71  IIKNLTEQTVT---RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
             + LTE+ +      L    +  I  IE+IQD VE +L+      I + Y+LYR +R  
Sbjct: 67  KAERLTEKVIENLKTFLSGRHANSIPAIEEIQDTVETTLIAENEAPIAKAYILYRAKREA 126

Query: 128 VRAAQSHSKSDAPIAP 143
           VR AQ           
Sbjct: 127 VRNAQKLMLDINETMD 142


>gi|90425006|ref|YP_533376.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris BisB18]
 gi|90107020|gb|ABD89057.1| Ribonucleoside-triphosphate reductase, anaerobic [Rhodopseudomonas
           palustris BisB18]
          Length = 673

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FDP+KI  AI +A       G + +   +     L  Q +  +      
Sbjct: 12  RVIKRSGEQAPFDPAKIHSAIERA-------GKATAEFDRPEADLLGIQAIKVISHRFID 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               HIE IQD VE  L+ + H    R Y++YRE+R+ +R  +           +
Sbjct: 65  QA-PHIEQIQDVVEQVLISANHFATARAYIVYREQRARLRRDRHTVVDVETSINE 118


>gi|330836811|ref|YP_004411452.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Spirochaeta coccoides DSM 17374]
 gi|329748714|gb|AEC02070.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Spirochaeta coccoides DSM 17374]
          Length = 785

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 12/174 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V  +D +KI+RAI+KA         +               T +  L+    +
Sbjct: 5   IVKRDGRVVLYDEAKIARAILKAM-------EAAGTPDAVKAAAAVANTTSAYLEKKFGS 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + IE IQD VE  LM SG+  + + Y+LYR ER+  R   S              M  
Sbjct: 58  ESLPIEGIQDAVETQLMHSGYEDVAKRYILYRAERTRRREMNSDLMKMMDELTHEDAMDS 117

Query: 151 DGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYKNMY-DG-LSESDLE 199
           D    + N      +  +++      +D  +K +L +  +  Y DG +   D +
Sbjct: 118 DTKRENANIDGDTAMGTMLKYGSESSKDYYNKYLLEDDIRQAYQDGWIHIHDFD 171


>gi|325969858|ref|YP_004246049.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta sp.
           Buddy]
 gi|324025096|gb|ADY11855.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta sp.
           Buddy]
          Length = 691

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G V   +  KI  AI KA        A  S +  D ++       + +L   K 
Sbjct: 4   QVVKRDGQVVLCEVQKIINAITKA--------AVASSQDVDALE-----VASLVLARMKG 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              + +E IQD VE +LM++G  K  + Y+LYR +R  +R  ++  K+   +   
Sbjct: 51  NNPITVEQIQDLVEQALMETGATKTAKAYILYRSQRERMREGKALIKATNALFDS 105


>gi|213864875|ref|ZP_03386994.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 115

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
            ++  LI ++ P+Y  + AR  +  LR++               +M  L
Sbjct: 64  KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPALYHHVVKMVEL 112


>gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
 gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
          Length = 424

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K  Q+IKR+  ++ F+  KI++AI KA ++VE    S +I + + +     +      +
Sbjct: 1   MKITQIIKRDALISLFELDKITKAIQKAMLSVENGNKSDAIAISESVNETLLE-----RK 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++   I  +E +QD VE  LM S    + + Y+LYR E++ +R 
Sbjct: 56  RSEPDYIPTVEQVQDIVEYKLMDSPFQDVAKAYILYRNEQARIRK 100


>gi|224367600|ref|YP_002601763.1| anaerobic ribonucleoside triphosphate reductase [Desulfobacterium
           autotrophicum HRM2]
 gi|223690316|gb|ACN13599.1| NrdD [Desulfobacterium autotrophicum HRM2]
          Length = 696

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G V  FD SKI  AI KA       G +     +   K LT + +  L ++ +  
Sbjct: 5   INKRDGRVAQFDSSKIVDAIAKA-------GKATGEFDEREAKKLTLKVI-TLARNLRLG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +E+IQD VE  L+ S  +K  + Y++YRE+R+ +R
Sbjct: 57  KCPEVEEIQDIVERILLDSPFYKTAKAYIIYREQRNQIR 95


>gi|329961239|ref|ZP_08299419.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides fluxus
           YIT 12057]
 gi|328532002|gb|EGF58816.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides fluxus
           YIT 12057]
          Length = 735

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 101/306 (33%), Gaps = 47/306 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VIKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  SQMTVEAIQDLVELELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LS    E     Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSDEVLEAVSQNYLHIHDKDYYPTKS 168

Query: 204 FSSRTLIEKE---------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDHILKNGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEE-GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             +  Y   Y+    ++     E +   D  +L    K   D+  + L       R   H
Sbjct: 222 PAFDFYLAPYVRNSYIEEIKNLEELNGKDYSHLYQ--KELTDYLPQPLDGLTDEKRVVQH 279

Query: 309 INGSRI 314
                +
Sbjct: 280 AINKTV 285


>gi|218780155|ref|YP_002431473.1| anaerobic ribonucleoside triphosphate reductase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761539|gb|ACL04005.1| anaerobic ribonucleoside-triphosphate reductase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 697

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  FD +KI+ AI +A       G +     +   + LT + V  L    + 
Sbjct: 4   QIKKRDGRIVPFDAAKITNAIAQA-------GKATDEFTEREARKLTLRVV-TLAHDMRL 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E++QD VE  L+ S +    + Y+LYRE+ + +R      + D
Sbjct: 56  GSIPEVEEVQDIVEHVLLDSPYFMSAKAYILYREQHAQIRRITREDRID 104


>gi|167744304|ref|ZP_02417078.1| hypothetical protein Bpse14_39918 [Burkholderia pseudomallei 14]
          Length = 287

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 32/272 (11%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 6   WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIGATSPCGAQPLPPY- 64

Query: 595 EETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N         FD+    + +R  VR+LDN +D+    +    
Sbjct: 65  ---GSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 121

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 122 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLCHHAYAASAELAAERGA 181

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y                    L +    L   R        +   ++  G+R+S+  + A
Sbjct: 182 YP-------------------LCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFA 222

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSG 797
           P   ++   G   S  I+P+   +  +   +G
Sbjct: 223 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAG 254


>gi|332087395|gb|EGI92523.1| ribonucleoside-diphosphate reductase 2 subunit alpha domain protein
           [Shigella boydii 5216-82]
          Length = 258

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 109/257 (42%), Gaps = 11/257 (4%)

Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
               +G R    + F  RV M     E      A++  + + S  F  +TPT  N G + 
Sbjct: 1   MKTFDGKRY--LEDFADRVTMVALTLEQGDATLALQLTDEMLSGRFQPATPTFLNCGKQQ 58

Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             +L SCFL  + D++  I  A+     L+K  GG+    + +R  GA I     +S GV
Sbjct: 59  RGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGV 118

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           IP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    
Sbjct: 119 IPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVV 178

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQADRGEIKVFRK 539
           IPD+      +NA   LFSP    D+  +YGK F        Y+         +      
Sbjct: 179 IPDITFHLAKENAQMALFSP---YDVERVYGKPFADIAISEHYDELVADERIRKNTSTPV 235

Query: 540 ISAVALWRKMLTMLFET 556
           IS+    +  L+    T
Sbjct: 236 ISSSDWQKSSLSPAIPT 252


>gi|313158565|gb|EFR57959.1| anaerobic ribonucleoside-triphosphate reductase [Alistipes sp.
           HGB5]
          Length = 741

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + ++KR+G   +F   KI RA+ KAF++V                  T+  +T +L 
Sbjct: 3   ISELYIVKRDGKRKAFSVEKIKRAVRKAFLSVGSYA--------------TDDDITSILS 48

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +  + +E+IQ+QVE +LM   +  + + Y+LYR++ ++ R  +   +
Sbjct: 49  RVHVSDGMSVEEIQNQVEVALMAERYFAVAKSYMLYRQKHTEEREDREKLE 99



 Score = 44.5 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 50/397 (12%), Positives = 117/397 (29%), Gaps = 39/397 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           +L I+  DG   +F+ ++++  V +A    G       I    +  ++ DG+S  +++  
Sbjct: 5   ELYIVKRDGKRKAFSVEKIKRAVRKAFLSVGSYATDDDITSILSRVHVSDGMSVEEIQNQ 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT-------VYKKPQKATHHEMQCLYPE 254
           +      + E+   Y  V   ++L + ++                   A++      Y  
Sbjct: 65  V--EVALMAER---YFAVAKSYMLYR-QKHTEEREDREKLEFLINYCDASNPATGSKYDA 118

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER-----DFAFEYLGLQILYDRYFLHI 309
                +E    A L+   +   + + L   L  +R             L +L + +    
Sbjct: 119 --NANVENKNIATLI-GELPKQNFIRLNRRLLTDRIKEMYGKELSDKYLHLLKEHFIYKN 175

Query: 310 NGSRI-----EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           + + +      +    ++          + +      F     +  F+ S+       T 
Sbjct: 176 DETSMANYCASITMYPWLLGGTLSVGGNSTRPTNLKSFCGGFVNMVFIVSSMLSGACATP 235

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
              +   +     +     +    E A L+K    +      +      I  +  +  G 
Sbjct: 236 EFLMYMNYFIE-QEYGEDYYKRADEVADLSKKRRTID---KIITDCFEQIVYSINQPTGA 291

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD---MNT 481
             F  V  + A       +       + +  H   E    L+K       R  +     T
Sbjct: 292 RNFQAVFWNVAYYDRYYFESLFGEFVFPDGSHPHWESLSWLQKRF----MRWFNRERTKT 347

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518
               P   M  +T++         +++      G  F
Sbjct: 348 VLTFPVETMALLTKDGDVMDREWGDITAQMYAEGHSF 384


>gi|294674062|ref|YP_003574678.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
 gi|294471904|gb|ADE81293.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
          Length = 701

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 20/164 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F   KI  AI+KAF +V+                     V+++L H    
Sbjct: 8   ITKRDGSKDLFSLDKIMNAIVKAFESVQEPADLA--------------IVSKILNHLDMH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQ+QVE +LM+ G++K+ + ++LYR+  S+ R         +       +   
Sbjct: 54  DNITVEDIQNQVEEALMREGYYKVAKSFILYRQLHSEDRETLEKMVFLSEYCE--SVNAA 111

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVS----SKIVLSETYKNMY 190
            G+    N+      +      L   +    ++ +L++  K MY
Sbjct: 112 TGSKYDANANVEHKNIATLIGELPKSNFIRLNRRLLTDRIKKMY 155



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 13/175 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
             I   DG+   F+  ++   + +A   +Q+ +   ++S+   ++  +D ++  D++  +
Sbjct: 6   FTITKRDGSKDLFSLDKIMNAIVKAFESVQEPADLAIVSKILNHLDMHDNITVEDIQNQV 65

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
             +    + +E  Y    +  L  +L    RE L  +    +                  
Sbjct: 66  EEA----LMREGYYKVAKSFILYRQLHSEDRETLEKMVFLSEYCESVNAATGSKYDANAN 121

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314
           +E    A L+   +   + + L   L  +R    + +  + L D Y   +    I
Sbjct: 122 VEHKNIATLI-GELPKSNFIRLNRRLLTDR---IKKMYGKQLADEYIDKLTHHFI 172


>gi|253580121|ref|ZP_04857388.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848640|gb|EES76603.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           5_1_39BFAA]
          Length = 792

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G V  F   KI+ AI KAF A E   +      +++I  L  +  +   +    
Sbjct: 3   QVVKRDGEVDEFKIGKITAAIHKAFDAKEKNYS------EEMIDLLGLRVTSDFQKKITD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +E+IQD VE  L+Q+G+  + + Y+LYR++R  VR  +S       I     + +
Sbjct: 57  NK-ITVEEIQDSVENVLIQAGYADVAKAYILYRKQREKVRNMKSTILDYKEIVNS-YVKV 114

Query: 150 DD 151
           +D
Sbjct: 115 ED 116


>gi|167899958|ref|ZP_02487359.1| hypothetical protein Bpse7_39915 [Burkholderia pseudomallei 7894]
          Length = 251

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 32/272 (11%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 3   WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPY- 61

Query: 595 EETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N         FD+    + +R  VR+LDN +D+    +    
Sbjct: 62  ---GSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 118

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 119 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGA 178

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y                    L +    L   R        +   ++  G+R+S+  + A
Sbjct: 179 YP-------------------LCDRHAHLDALRAGPPLPHAVCHAIERDGLRHSHLTSFA 219

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSG 797
           P   ++   G   S  I+P+   +  +   +G
Sbjct: 220 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAG 251


>gi|260590774|ref|ZP_05856232.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           veroralis F0319]
 gi|260537260|gb|EEX19877.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           veroralis F0319]
          Length = 713

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   + KRNG    F   KI  AI+KAF +V                      V+R+L 
Sbjct: 1   MKNFTITKRNGDKVPFSLDKIMNAIVKAFQSVNEPTDIG--------------IVSRILS 46

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + +EDIQ+QVE +LM+ G++K+ + +++YR++ ++ R      K
Sbjct: 47  DLDIHNDIKVEDIQNQVEFALMKEGYYKVAKSFIVYRQQHTEDRETLEKMK 97



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
             I   +G  + F+  ++   + +A   + + +   ++S    ++  ++ +   D++   
Sbjct: 4   FTITKRNGDKVPFSLDKIMNAIVKAFQSVNEPTDIGIVSRILSDLDIHNDIKVEDIQNQ- 62

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLR----REVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                     +  Y KV   F++ + +    RE L  +                      
Sbjct: 63  ----VEFALMKEGYYKVAKSFIVYRQQHTEDRETLEKMKFLSDYCEAKNAATGSKFDANA 118

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +E    A L+   +     + L   L  +R
Sbjct: 119 NVEHKNIATLI-GELPKQGFIRLNRRLLVDR 148


>gi|297569531|ref|YP_003690875.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925446|gb|ADH86256.1| anaerobic ribonucleoside-triphosphate reductase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 741

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 17/189 (8%)

Query: 3   PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62
           P++   +   D  P+ ++  P       + KR+  +  F   KI+ AI KA       G 
Sbjct: 5   PTQPQPQATTDHQPAASHTTPRSQLFSVIRKRDQRLVPFAAEKITNAIHKAGEVTGELGP 64

Query: 63  SRSIRVQDIIKNLTEQTVTRLLQHNKSAL------IVHIEDIQDQVECSLMQSGHHKITR 116
             + R+   +  + +      L  +  A       +  +E+IQD VE  L+ S + K  +
Sbjct: 65  PEARRLTMQVLAIAQNFFGEQLNRSAPAAGDQAAAVPSVEEIQDLVEEVLLSSPYKKTAK 124

Query: 117 EYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSK-RLEMIVEEACSGLQD 175
            Y+LYR++ + +R   + +  D            DG L   + + +    +  +  GL +
Sbjct: 125 AYILYRDQHARIREMVTKTDLDLI----------DGYLQKLDWQVQENSNMSYSLQGLNN 174

Query: 176 VSSKIVLSE 184
             S  +   
Sbjct: 175 YVSSEISKN 183


>gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
 gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
          Length = 424

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V +F   KI  AI KA  A +         +   + ++ E       +H  S 
Sbjct: 6   VTKRDGSVKTFKIDKIKVAIHKAMQAADSGNLDDVDNISQKVLDVIESI-----KHTDSR 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            I  IE IQ+ VE  LM SG HK+ + Y+LYR E S  R 
Sbjct: 61  YIPSIEGIQNIVEEQLMGSGFHKVAKAYILYRNEHSKDRK 100


>gi|154489787|ref|ZP_02030048.1| hypothetical protein PARMER_00015 [Parabacteroides merdae ATCC
           43184]
 gi|154089512|gb|EDN88556.1| hypothetical protein PARMER_00015 [Parabacteroides merdae ATCC
           43184]
          Length = 775

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI+ AI KA +  E          +++++ +T+          K  
Sbjct: 45  VIKRDGRIVGFNEEKIATAIRKAMLHTENG------EDRELVRQITDHI------SFKGD 92

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 93  SQMTVEAIQDAVELELMNSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 148

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 149 DITRENANMN 158


>gi|225388054|ref|ZP_03757778.1| hypothetical protein CLOSTASPAR_01788 [Clostridium asparagiforme
           DSM 15981]
 gi|225045907|gb|EEG56153.1| hypothetical protein CLOSTASPAR_01788 [Clostridium asparagiforme
           DSM 15981]
          Length = 256

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G +  F  +KI+ AI KAF A +           +I++ L+ +          
Sbjct: 2   IEVVKRDGEIAEFSLNKITEAIKKAFKATKKDYN------NEILELLSLRVTADFQGKMT 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S       +     + 
Sbjct: 56  EGR-ISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNSTILDYKDVVNS-YVK 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116



 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            ++++  DG +  F+  ++   +++A    +   +  +L         +    ++E  + 
Sbjct: 1   MIEVVKRDGEIAEFSLNKITEAIKKAFKATKKDYNNEILELLSLRVTADFQGKMTEGRIS 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
              I  S   + ++  Y  V   ++L + +RE
Sbjct: 61  VEEIQDSVEHVLEQTGYTDVAKAYILYRKQRE 92


>gi|218264992|ref|ZP_03478616.1| hypothetical protein PRABACTJOHN_04326 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221660|gb|EEC94310.1| hypothetical protein PRABACTJOHN_04326 [Parabacteroides johnsonii
           DSM 18315]
          Length = 737

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI+ AI KA +  E          +++++ +T+          K  
Sbjct: 5   VIKRDGRIVGFNEEKIATAIRKAMLHTENG------EDRELVRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  TQMTVEAIQDAVELELMNSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|325473891|gb|EGC77079.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           denticola F0402]
          Length = 708

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ---HN 87
           V+KR+G + +++  KI +AI KA  AVEG          +    LT++   +L       
Sbjct: 32  VVKRSGEIEAYNRKKIEQAINKAITAVEGSPN------DEKAVFLTDKVEEKLKNIMASR 85

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  I  IE+IQD VE  L++    ++ + Y+LYR +R  VR A+S
Sbjct: 86  YAHSIPAIEEIQDVVELVLIEQQEARLAKAYILYRAKREAVRDAES 131


>gi|303239827|ref|ZP_07326350.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
 gi|302592537|gb|EFL62262.1| anaerobic ribonucleoside-triphosphate reductase [Acetivibrio
           cellulolyticus CD2]
          Length = 696

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKRNG    F P KI+ AI KA        ++         + +  Q +  L +     
Sbjct: 5   IIKRNGREEKFQPEKITWAIFKA-------ASACGGDDFTKAEGICRQVMD-LAELTYKD 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               +E+IQD VE  L+++GH K  + ++LYRE+R   R 
Sbjct: 57  TTPTVEEIQDTVEKVLIENGHAKTAKAFILYREKRKSARD 96


>gi|42526839|ref|NP_971937.1| anaerobic ribonucleoside triphosphate reductase [Treponema
           denticola ATCC 35405]
 gi|41817154|gb|AAS11848.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           denticola ATCC 35405]
          Length = 708

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ---HN 87
           V+KR+G + +++  KI +AI KA  AVEG          +    LT++   +L       
Sbjct: 32  VVKRSGEIEAYNRKKIEQAINKAITAVEGSPN------DEKAVFLTDKVEEKLKNIMASR 85

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +  I  IE+IQD VE  L++    ++ + Y+LYR +R  VR A+S
Sbjct: 86  YAHSIPAIEEIQDVVELVLIEQQEARLAKAYILYRAKREAVRDAES 131


>gi|317479915|ref|ZP_07939030.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_1_36]
 gi|316903860|gb|EFV25699.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_1_36]
          Length = 735

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 103/313 (32%), Gaps = 48/313 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +                L  Q   R+     S 
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKGED----------LQLIHQITDRISFKGDSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  MT--VEAIQDLVEVELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LSE         Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVLDAVTQNYLHIHDKDYYPTKS 168

Query: 204 FSSRTLIEKE---------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDHILKYGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             +  Y   Y+    ++     E +   D  +L    K   D+  + L      DR   H
Sbjct: 222 PAFDFYLAPYVRNSFIEEVKNLEELNGKDYSHLYQ--KELADYLLQPLDGLTDEDRIVQH 279

Query: 309 INGSRIEMP-QAF 320
                +    Q+ 
Sbjct: 280 AVNKTVSRVHQSM 292


>gi|167821508|ref|ZP_02453188.1| hypothetical protein Bpse9_40698 [Burkholderia pseudomallei 91]
          Length = 263

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 32/272 (11%)

Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594
             +  + A  +WR++++   +   P + F D  +   P +    + +++ C    L    
Sbjct: 11  WTYASVPARHVWREIVSAARDGAGPGLVFVDAIDAADPLRGRERIDATSPCGAQPLPPY- 69

Query: 595 EETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647
                  LG+I+L     N         FD+    + +R  VR+LDN +D+    +    
Sbjct: 70  ---GSAMLGAIDLSRFVRNPFGAGGEPRFDFAAFDTAVRIEVRLLDNALDVTRWPLAAHA 126

Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707
           + ++  R IG+G+ G    L ++ + Y SP A E+A      +  HA +AS ELA ERGA
Sbjct: 127 RESYQKRRIGVGVTGLADMLAMMRLRYDSPAAREMARYIASDLRHHAYAASAELAAERGA 186

Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767
           Y                    L +    L   R        +   ++  G+R+S+  + A
Sbjct: 187 YP-------------------LCDRHAHLDALRVGPPLPHAVCHAIERDGLRHSHLTSFA 227

Query: 768 PTATIANICG--VSQSIDPSYQNLYVKSNMSG 797
           P   ++   G   S  I+P+   +  +   +G
Sbjct: 228 PVIGVSLAFGDHCSPGIEPARAWIEHRPVRAG 259


>gi|291547169|emb|CBL20277.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           SR1/5]
          Length = 790

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  F   KI+ AI KAF A     +S      D+I  L  +         ++
Sbjct: 3   QVVKRDGELDEFKMGKITAAIDKAFDAKGKNYSS------DMIDLLGLRVTADFQNKIEN 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R  +S       I     + +
Sbjct: 57  NR-ISVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIRNMKSTILDYKEIVNS-YVKV 114

Query: 150 DD 151
           +D
Sbjct: 115 ED 116


>gi|209963665|ref|YP_002296580.1| anaerobic ribonucleoside triphosphate reductase [Rhodospirillum
           centenum SW]
 gi|209957131|gb|ACI97767.1| anaerobic ribonucleoside-triphosphate reductase [Rhodospirillum
           centenum SW]
          Length = 675

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V++F+  KI  AI +A       G +           L  Q +  +     + 
Sbjct: 13  VIKRSGEVSAFNGDKIRSAIERA-------GKATGEFDGAEAHLLAIQAIKVIGHRFHTD 65

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              HIE IQD VE  L+ + H    R Y++YRE+R+ +R  +           +
Sbjct: 66  A-PHIEQIQDVVEQVLISANHFATARAYIVYREQRARLRRDRKTVVDVETSINE 118


>gi|261416546|ref|YP_003250229.1| anaerobic ribonucleoside-triphosphate reductase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373002|gb|ACX75747.1| anaerobic ribonucleoside-triphosphate reductase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 776

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV--------QDIIKNLTEQTVTR 82
           V KR+G    F+  KI+ A++KAF A                     D++ N+  +    
Sbjct: 5   VKKRDGREMPFNIEKIADAVIKAFRASGELDEQIKASQAQMNLLGSDDLLTNVALKVAAE 64

Query: 83  LLQHNK--SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
            + H +  +     IE+IQD VE +L + G+    + Y+LYR ER+ VR   +       
Sbjct: 65  AVGHLEAENKTKPDIEEIQDAVEKALTEGGYADTAKSYILYRAERTRVREVNTRLMQTLH 124

Query: 141 IAPKLKIMMDDGTLISFNSK 160
                     D    + N  
Sbjct: 125 DITFSSAKESDLKRENANID 144


>gi|167756187|ref|ZP_02428314.1| hypothetical protein CLORAM_01717 [Clostridium ramosum DSM 1402]
 gi|167704179|gb|EDS18758.1| hypothetical protein CLORAM_01717 [Clostridium ramosum DSM 1402]
          Length = 772

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G + +F+  KI+ AI KAF A  GK   ++        N+ +   T+L +    
Sbjct: 9   NIRKRDGRLVAFELDKIAGAIYKAFEASGGKYELKNA------MNIAKTVETKLEKKKSE 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E +QD VE  L++ G+ ++ + Y+LYR  R+  R  +S                
Sbjct: 63  --LPTVELVQDTVEEVLIEQGYVRVAKAYILYRANRTRERDMKSRLMKTFEEITFADSKD 120

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 121 SDLKRENANVN 131


>gi|255994385|ref|ZP_05427520.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           saphenum ATCC 49989]
 gi|255993098|gb|EEU03187.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           saphenum ATCC 49989]
          Length = 750

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 98/291 (33%), Gaps = 29/291 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G +  FD SKIS AI+ A   V G          ++   L  +   RL+    S
Sbjct: 6   KIRKRDGRIVDFDISKISEAILNA-AKVLGGNNK------EMSDKLASEVHDRLIAQFGS 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E IQD VE  L+ +GH +  +EY+LYR ER+  R                    
Sbjct: 59  T-PPPVESIQDVVEAVLIDNGHARTAKEYILYRAERTKNRDMNMRLMKTYQDLTFKSAKD 117

Query: 150 DDGTLISFNSK---RLEMIVEEACSGLQDVSSKIVLSETYKNMY-DG-LSESDLETALIF 204
           +D    + N      +  +++    G +      VL++ +   + DG +   DL+   + 
Sbjct: 118 NDIKRENANIDGDTAMGTMLKYGSEGAKQFYEMFVLNDEHAQAHKDGDIHIHDLDFLTLT 177

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           ++   I                 +R+                     Y    C  I+   
Sbjct: 178 TTCCQI----------------DIRKLFKNGFSTGHGFLREPNDIQSYAALACIAIQSNQ 221

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
             +   +S+  FD        K  +   +  +G  I       +      E
Sbjct: 222 NDQHGGQSIPYFDYGMADGVRKTFKRLYYTNIGKIIDIKYDKENTVDKVKE 272


>gi|237734134|ref|ZP_04564615.1| anaerobic ribonucleoside-triphosphate reductase [Mollicutes
           bacterium D7]
 gi|229382694|gb|EEO32785.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           D7]
          Length = 772

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G + +F+  KI+ AI KAF A  GK   ++        N+ +   T+L +    
Sbjct: 9   NIRKRDGRLVAFELDKIAGAIYKAFEASGGKYELKNA------MNIAKTVETKLEKKKSE 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E +QD VE  L++ G+ ++ + Y+LYR  R+  R  +S                
Sbjct: 63  --LPTVELVQDTVEEVLIEQGYVRVAKAYILYRANRTRERDMKSRLMKTFEEITFADSKD 120

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 121 SDLKRENANVN 131


>gi|193214402|ref|YP_001995601.1| anaerobic ribonucleoside triphosphate reductase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087879|gb|ACF13154.1| anaerobic ribonucleoside-triphosphate reductase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 699

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + +FD  KI+ AI+ A       G +      +  KNLT   +  L +    
Sbjct: 7   QIVKRDGTLVAFDSEKITHAILAA-------GEATGEFGAETAKNLTNLVIN-LARKTLG 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                +E+IQD VE  L+QS + K  + Y+LYR++   +R 
Sbjct: 59  EKTPSVEEIQDLVERVLLQSPYMKTAKAYILYRDQHHKIRE 99


>gi|189462188|ref|ZP_03010973.1| hypothetical protein BACCOP_02870 [Bacteroides coprocola DSM 17136]
 gi|189431091|gb|EDV00076.1| hypothetical protein BACCOP_02870 [Bacteroides coprocola DSM 17136]
          Length = 826

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F PSKI+ AI KAF A            +++I  +T++ +          
Sbjct: 39  IIKRDGKRENFSPSKITNAISKAFNATGI------AHQEELIDEITQRVINHFEN----- 87

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K
Sbjct: 88  PTIGVEEIQDLVETELMKV-QPEVAKKYIIYRQWRNTERDRKTQIK 132


>gi|115525180|ref|YP_782091.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris BisA53]
 gi|115519127|gb|ABJ07111.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris BisA53]
          Length = 673

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  KI  AI +A       G + +   +     L  Q +  +      
Sbjct: 12  RVIKRSGEQAPFDSGKIHSAIERA-------GKATAEFDRPEADLLAIQAIKVISHRFID 64

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               HIE IQD VE  L+ + H    R +++YRE+R+ +R  +           +
Sbjct: 65  QA-PHIEQIQDVVEQVLISANHFATARAFIVYREQRARLRRDRKTVVDVETSINE 118


>gi|239625641|ref|ZP_04668672.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239519871|gb|EEQ59737.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 804

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV+KR+G    F  +KI+ AI KAF A +           +I++ L+ +         K
Sbjct: 2   IQVVKRDGENAEFSLNKITEAIKKAFKATKKDYN------NEILELLSLRVTADFQDKMK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              ++ +E+IQD VE  L Q+G+  + + Y+LYR++R  +R   S       +     + 
Sbjct: 56  EG-MISVEEIQDSVEHVLEQTGYTDVAKAYILYRKQREKIRNMNSTILDYKDVVNS-YVK 113

Query: 149 MDD 151
           ++D
Sbjct: 114 VED 116



 Score = 41.8 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLE 199
            ++++  DG    F+  ++   +++A    +   +  +L         +  D + E  + 
Sbjct: 1   MIQVVKRDGENAEFSLNKITEAIKKAFKATKKDYNNEILELLSLRVTADFQDKMKEGMIS 60

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
              I  S   + ++  Y  V   ++L + +RE
Sbjct: 61  VEEIQDSVEHVLEQTGYTDVAKAYILYRKQRE 92


>gi|145527770|ref|XP_001449685.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417273|emb|CAK82288.1| unnamed protein product [Paramecium tetraurelia]
          Length = 183

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 15/174 (8%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
            H +  A       ++  DG   + + +++   ++   S LQ ++  +++ +  + MY+G
Sbjct: 10  EHLQELAKQKNISYVLKRDGGKQNIDIQKIAERLQNLASNLQHININLIMWKVIQGMYEG 69

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252
           ++   L+     +   +    P Y+ + AR        E   +  +   K      +   
Sbjct: 70  ITTVQLDNLAAETCAYMNLVHPQYSLLAARIA------ETSESFSEVAIKLHSFTDKYGR 123

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
           P      I + V   ++       +   +  ++ YERD+ +++ G + L   Y 
Sbjct: 124 P---APLIADDVYKIIMD------NKDIIQKEINYERDYQYDFFGFKTLERSYL 168


>gi|218281714|ref|ZP_03488096.1| hypothetical protein EUBIFOR_00663 [Eubacterium biforme DSM 3989]
 gi|218217221|gb|EEC90759.1| hypothetical protein EUBIFOR_00663 [Eubacterium biforme DSM 3989]
          Length = 724

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    FD SKI  AI KA  A      S      ++I+++T+  + +     +
Sbjct: 1   MNVIKRSGEEVVFDASKIENAIKKANKATTHNQMS-----DELIRSVTQSVINKCENLKR 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
           S    ++E+IQD VE  LM+     +   Y+ YR ER+ VR A S  K    +  +    
Sbjct: 56  S---PNVEEIQDMVEGELMEHRCFAVAHNYITYRYERALVRKANSTDKQIMSLLERNNEE 112

Query: 147 IMMDDGTLISF 157
           +  ++      
Sbjct: 113 VKQENSNKNPL 123


>gi|89893143|ref|YP_516630.1| anaerobic ribonucleoside triphosphate reductase [Desulfitobacterium
           hafniense Y51]
 gi|89332591|dbj|BAE82186.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 789

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI KA  A  GK    S+        L E+ V  L  +   
Sbjct: 4   KIRKRDGREAPFNIEKIANAIFKAASATGGKDYQSSLL-------LAEEVVNYLEVNLHK 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +E+IQD VE  L++ GH +  +E++LYR ER+ VR   +            +   
Sbjct: 57  -KVPSVEEIQDAVEKILIERGHARTAQEFILYRAERTRVREMDTRLMKVYEELTFKEAKD 115

Query: 150 DDGTLISFNSK 160
           +D    + N  
Sbjct: 116 NDMKRENANID 126


>gi|291515766|emb|CBK64976.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Alistipes shahii WAL 8301]
          Length = 795

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 14/124 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + +IKR+G    F   KI RAI KAF A       ++      ++ +       + +  
Sbjct: 5   QISIIKRDGKTEPFSLDKIVRAITKAFRAGGITDEGQA------VEQIASDVAAAITK-- 56

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                + +E+IQD VE  LM+     I + Y++YRE R+  R  +S  KS   +   + +
Sbjct: 57  ---AEISVEEIQDMVEERLMKRNPS-IAKRYIIYREWRNVERDRRSSIKSV--MDGIVTV 110

Query: 148 MMDD 151
             +D
Sbjct: 111 EKND 114



 Score = 42.5 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ I+  DG    F+  ++   + +A            + +   ++   ++++++    I
Sbjct: 5   QISIIKRDGKTEPFSLDKIVRAITKAFRAGGITDEGQAVEQIASDVAAAITKAEISVEEI 64

Query: 204 FSSRT--LIEKEPNYAKVTARFLLEKLRREV 232
                  L+++ P+   +  R+++ +  R V
Sbjct: 65  QDMVEERLMKRNPS---IAKRYIIYREWRNV 92


>gi|319935635|ref|ZP_08010069.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           29_1]
 gi|319809512|gb|EFW05933.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           29_1]
          Length = 766

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  FD +KI+ AI KAF A E K         D    + ++   +L   +   
Sbjct: 5   IRKRDGRMDQFDVNKIAGAIYKAFQATEAKYDL------DTAIAVAQEVEEKLEARHSE- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +E +QD VE +L+  G+ +I + Y+LYR ER+  R  +S                 
Sbjct: 58  -LPTVELVQDTVEETLISKGYVRIAKAYILYRAERTRSRDRKSRLMKTMEEITFQDAKDS 116

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 117 DLKRENANVN 126


>gi|303257842|ref|ZP_07343852.1| anaerobic ribonucleoside-triphosphate reductase [Burkholderiales
           bacterium 1_1_47]
 gi|302859445|gb|EFL82526.1| anaerobic ribonucleoside-triphosphate reductase [Burkholderiales
           bacterium 1_1_47]
          Length = 673

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ--DIIKNLTEQT 79
            P     + VIKR+G V  FD SKI+ A+ KA  A     A+ + R+   +++  L +Q 
Sbjct: 2   SPTMETPMYVIKRDGTVKDFDISKIAAALEKAGKATGEFDAATANRITHIEVMNRLAQQN 61

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           V              IE IQD VE +L  +G  K  R Y++YRE+R+  R A+       
Sbjct: 62  VA----------TPTIEQIQDAVENALFDTGFRKTLRAYIVYREQRAKARDARRSLVDVE 111

Query: 140 PIAPK 144
               +
Sbjct: 112 SSMNE 116


>gi|302672270|ref|YP_003832230.1| anaerobic ribonucleoside triphosphate reductase NrdD1 [Butyrivibrio
           proteoclasticus B316]
 gi|302396743|gb|ADL35648.1| anaerobic ribonucleoside triphosphate reductase NrdD1 [Butyrivibrio
           proteoclasticus B316]
          Length = 743

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKIS AI KA   V  +      ++ DI   + E+    L +   
Sbjct: 1   MKIIKRSGKEVDFDVSKISAAIEKANKEVTEEKRLTHGQIIDIATGV-EKLCATLTRAA- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  LM++G   + R+Y+ YR + + VR + +  +    +  
Sbjct: 59  -----SVEEIQDMVEDGLMRAGKFDVARKYITYRYKHALVRKSNTTDEQIMSLIE 108


>gi|302337969|ref|YP_003803175.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635154|gb|ADK80581.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 827

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 28/169 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ----H 86
           +++R+GG+  +D  +I  A+ +A  A              + + LT     +L       
Sbjct: 33  IVRRDGGLVPYDRERILSAVARAIEATGRGEEGS------LAEGLTLAVEEKLRSGFAAR 86

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS------------H 134
           + ++    +E+IQD VE +L+++G   + + Y+LYR     +R A+              
Sbjct: 87  HPNSA-PAVEEIQDIVETTLIEAGEAAVAKAYILYRARHEAIRDAKKLLLDIDLTMDGYL 145

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
           S+SD  +     +    G LI  NS  +      A   L++V    +  
Sbjct: 146 SQSDWRVNENANVNYSLGGLILHNSGTIT-----ANYWLKNVYPAEIAE 189


>gi|160889395|ref|ZP_02070398.1| hypothetical protein BACUNI_01819 [Bacteroides uniformis ATCC 8492]
 gi|270296553|ref|ZP_06202752.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D20]
 gi|156860912|gb|EDO54343.1| hypothetical protein BACUNI_01819 [Bacteroides uniformis ATCC 8492]
 gi|270272540|gb|EFA18403.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D20]
          Length = 735

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 103/313 (32%), Gaps = 48/313 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +                L  Q   R+     S 
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKGED----------LQLIHQITDRISFKGDSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  MT--VEAIQDLVEVELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LSE         Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVLDAVTQNYLHIHDKDYYPTKS 168

Query: 204 FSSRTLIEKE---------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDHILKYGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             +  Y   Y+    ++     E +   D  +L    K   D+  + L      DR   H
Sbjct: 222 PAFDFYLAPYVRNSFIEEVKNLEELNGKDYSHLYQ--KELADYLLQPLDGLTGEDRIVQH 279

Query: 309 INGSRIEMP-QAF 320
                +    Q+ 
Sbjct: 280 AVNKTVSRVHQSM 292


>gi|158320179|ref|YP_001512686.1| anaerobic ribonucleoside triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140378|gb|ABW18690.1| anaerobic ribonucleoside-triphosphate reductase [Alkaliphilus
           oremlandii OhILAs]
          Length = 773

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 13/181 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G    F+  KI+ AI +A         S      +   N+ EQ V  + +   +
Sbjct: 4   KITKRDGREVPFNIEKIANAIFRA-------SKSVGEEDYEAAFNIAEQAVAYIEKEI-N 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E IQD VE  L+++   +I + Y++YR ER+ +R   +                
Sbjct: 56  NPNPSVEQIQDIVEKVLIKNEKAEIAKAYIIYRAERTRLREMNTRLMKIYEDLTFKDAED 115

Query: 150 DDGTLISFNSKRLEM---IVEEACSGLQDVSSKIVLSETYKNMYD--GLSESDLETALIF 204
           +D    + N         +++    G +   +  VL E Y + +    +   DL+   + 
Sbjct: 116 NDVKRENANIDGNTAMGTMLKYGSEGAKQFYNMFVLKEEYSSAHKTGDIHIHDLDFLTLT 175

Query: 205 S 205
           +
Sbjct: 176 T 176


>gi|78188679|ref|YP_379017.1| ribonucleotide-diphosphate reductase subunit alpha [Chlorobium
            chlorochromatii CaD3]
 gi|78170878|gb|ABB27974.1| ribonucleotide reductase family protein [Chlorobium chlorochromatii
            CaD3]
          Length = 1513

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 105/273 (38%), Gaps = 27/273 (9%)

Query: 596  ETAVCNLGSINLLAHFANNQFDYD--KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            +   CNL S+NL+             +L         VL+  + +     +   + ++  
Sbjct: 831  DDTACNLASLNLIHFVDEASGTIKINELRHAASLWTVVLEISVLMAHFPSQTIARLSYDF 890

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
            R +GLG     + L +L IPY S EA+ +A      ++  A   S E+A++ G +  +  
Sbjct: 891  RTLGLGFANLGTVLMVLGIPYDSAEALAMAGAIASLMTGQAYVTSAEMARDLGTFKRYSD 950

Query: 714  SLWDQGVFPIDSI------------------GLLAEVRDELAMNRTSRLPWDELKKRVKT 755
            +  D      +                      +     + A+   +   W+E+ ++ + 
Sbjct: 951  NANDMLRVMRNHRRAAQNAATTDYEGLSVIPHGINAAHCQTALAEAAGAVWNEVLQKGEA 1010

Query: 756  IGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQR 813
             G RN+    IAPT TI  +    +  I+P +  + + K    G F +VN  +   L + 
Sbjct: 1011 HGFRNAQVSVIAPTGTIGLVMDCDTTGIEPEFAIVKFKKLAGGGYFKIVNQSVHKALLRL 1070

Query: 814  DLWDEAMISDLKYH---DGSIGNIERIP-DDLK 842
              +    I D++ +    G++     I  + LK
Sbjct: 1071 G-YSAEQIEDIERYCKGHGTLEGCPAINGEWLK 1102



 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 11/121 (9%)

Query: 831  IGNIERIPDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881
            I     +  +   +   A          I     I   +  Q +I  A S  + +    +
Sbjct: 1179 IEGAPHLQPEHLAVFDCASKCGKKGKRYIRHQAHINMMAAVQPFISGAISKTVNMPATAT 1238

Query: 882  GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941
              ++  +YR AW   +K     R  S  S   ++    D  L+ V +     +      P
Sbjct: 1239 TAEIGNVYRDAWQQMVKAVTIYRDGSKLSQPLNSSSYND--LDEVIMLGTEETLDETKGP 1296

Query: 942  S 942
             
Sbjct: 1297 Q 1297



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 118/361 (32%), Gaps = 84/361 (23%)

Query: 304 RYFLHINGSRIEMP---QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
                      + P   QAF+  VA  +  +       + +++N   +F +  + P   +
Sbjct: 101 WREWGEKHGYFDTPDDAQAFYDEVAFMILAQMGAPN--SPQWFNTGLNFAYGTTGPAQGH 158

Query: 361 SG--------------TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGND 403
                              PQ  +CF+ +V D   +  GIF      A + K+  G G +
Sbjct: 159 FYVDPATGEVTESGDAYSRPQAHACFIQSVNDDLVNDGGIFDLAIREARVFKFGSGSGTN 218

Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEF 462
           ++ +R  G       G S G++ FLK+ +  A A+  G   R+ A    ++  H DVE+F
Sbjct: 219 YSSLRSSGEK-LSGGGSSSGLMSFLKIFDSAAGAIKSGGTTRRAAKMVIVDIDHPDVEKF 277

Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK------ 516
           ++ +    D   +   +   + I   F++ + + A            L  L         
Sbjct: 278 IEWKAKEED---KVASLVAGSRICSRFLQAIVEEALANGADRKTNPRLQQLIQNALSRGV 334

Query: 517 -------------------EFEIAYENYERQAD--------------------------- 530
                              +F     +YE +A                            
Sbjct: 335 PMSYVIRVLALVEQGYTSLDFNEYDTHYESEAYQTVGGQNSNNTVRVTNAFMLAVANDEV 394

Query: 531 -----RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
                R   KV R + A  LW K+L   ++   P + F    N        G +++SN C
Sbjct: 395 WELRQRTTGKVSRVVKARELWEKILLSAWKCADPGLQFDTTINEWHTCPQSGRINASNPC 454

Query: 586 T 586
            
Sbjct: 455 V 455


>gi|315185589|gb|EFU19358.1| anaerobic ribonucleoside-triphosphate reductase [Spirochaeta
           thermophila DSM 6578]
          Length = 689

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  +D S+I+RAI+KA  +V G+       + + + +L E+ +  L++     
Sbjct: 16  VVKRDGQIEFYDRSRITRAILKAIESVRGEKD---KSLAEHLTDLVEEKIRALMRDRHPN 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               IE+IQD VE  L++     + + Y+LYR + S +R  +      + I  
Sbjct: 73  SAPAIEEIQDLVETVLIEERQVDLAKAYILYRAQHSIMRDTRKLMLDISAIMD 125


>gi|150005617|ref|YP_001300361.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|212693359|ref|ZP_03301487.1| hypothetical protein BACDOR_02872 [Bacteroides dorei DSM 17855]
 gi|237710101|ref|ZP_04540582.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 9_1_42FAA]
 gi|237723614|ref|ZP_04554095.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D4]
 gi|265754020|ref|ZP_06089375.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|294778572|ref|ZP_06743994.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|149934041|gb|ABR40739.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|212664124|gb|EEB24696.1| hypothetical protein BACDOR_02872 [Bacteroides dorei DSM 17855]
 gi|229437962|gb|EEO48039.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           dorei 5_1_36/D4]
 gi|229456194|gb|EEO61915.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 9_1_42FAA]
 gi|263235734|gb|EEZ21258.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|294447521|gb|EFG16099.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
          Length = 697

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKETFSLDKIKNAIAKAFLSVGSFA--------------TQDVITTVLSRVSVS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             +++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGMNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99



 Score = 48.7 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 121/396 (30%), Gaps = 29/396 (7%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDL 198
           I  ++ I+  DG   +F+  +++  + +A   +   +++ V++      ++ DG++  ++
Sbjct: 2   INSEVFIIKRDGKKETFSLDKIKNAIAKAFLSVGSFATQDVITTVLSRVSVSDGMNVEEI 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEY 255
           +         L+ +   Y+   A  L  +     REV   +                   
Sbjct: 62  QN---QVEVALMAEHY-YSVAKAYMLYRQKHLEDREVRDKLKFLLDYCDASNPATGSKYD 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               +E    A L+   +   + + L   L  +R           L D Y   ++   +E
Sbjct: 118 ANANVENKNIATLI-GELPKSNFIRLNRRLLTDR-----------LKDMYGKELSDRYLE 165

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
           +    F+         ET                +   +      + T        F+  
Sbjct: 166 LLNHHFI-----YKNDETNLANYCASITMYPWLNNGTIAVGGNSTAPTNLKSFCGGFVNM 220

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTP-VRGLGAHIHGTNGKSQGVIPFL-KVAND 433
           V      + GA      L   +  +G ++          I   + K + +   +      
Sbjct: 221 VFIVSSMLSGACATPEFLMYMNYFIGLEYGQEYYKYPDKIVDLSTKQRTIDKIITDCFEQ 280

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              ++NQ    +     +    + D   F  L  N         D N+ +W+   FMK  
Sbjct: 281 IVYSINQPTGARNFQAVFWNVAYYDKYYFESLFGNFFFPDGSQPDWNSLSWLQKRFMKWF 340

Query: 494 -TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
             +     L  P E   L    G   +  Y ++  +
Sbjct: 341 NKERTRTVLTFPVETMALLTKDGDVLDKEYGDFTAE 376


>gi|194337606|ref|YP_002019400.1| anaerobic ribonucleoside-triphosphate reductase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310083|gb|ACF44783.1| anaerobic ribonucleoside-triphosphate reductase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 719

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 16/173 (9%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
               + +  IKR+G    FD  KI  A+ +A  AV           +     +    +  
Sbjct: 3   ATVFQEM--IKRDGRKVPFDAEKIVYAVFRALRAVGKA-------DRTKAAGIARDAIRE 53

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           L     +  +  +E++QD VE +L         + Y++YR +   +R A+    +   + 
Sbjct: 54  LESAM-NGNVPSVEEMQDMVEKTLFLHREFDAAKAYIIYRHQHQYMRDAKEMFSNIDVVD 112

Query: 143 PKLKI---MMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNM 189
             L I    + +    S++ + L   +     A   L  +    +       +
Sbjct: 113 SYLDIEDWRVRESANSSWSLQGLNQHISTIVSAQYWLNRIYPPEISDAHTSGL 165


>gi|145641095|ref|ZP_01796676.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae R3021]
 gi|145274256|gb|EDK14121.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 22.4-21]
          Length = 108

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            ++  LI K+ P+Y  + AR  +  LR++            T   
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPLVYTITSKN 108


>gi|308271161|emb|CBX27770.1| hypothetical protein N47_C18280 [uncultured Desulfobacterium sp.]
          Length = 758

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+  +  FD SKI+ A+ KA  A +      + ++   +  L  +         + 
Sbjct: 30  KIKKRDNRIVEFDSSKITAALTKAGRATDEFDERDARKLTLRVLTLAHEI--------RL 81

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  +E IQD VE  L+ S  +K  + Y++YRE+ + +R+  +++  D        I  
Sbjct: 82  GPIPDVEGIQDIVERVLLDSSFYKTAKAYIIYREQHAQIRSIATNANIDLVEH---YIQK 138

Query: 150 DD 151
            D
Sbjct: 139 LD 140


>gi|293370688|ref|ZP_06617238.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
 gi|292634212|gb|EFF52751.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
          Length = 697

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDL 198
           I+ ++ I+  DG   +F+  +++  + +A   +   +++ V++      ++ DG +  ++
Sbjct: 2   ISSEIFIIKRDGKKEAFSLDKIKNAISKAFLSVGSFATQDVITNVLSRVSISDGTNVEEI 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEY 255
           +         L+ +   Y+   A  L  +     REV   +                   
Sbjct: 62  QN---QVEVALMAEHY-YSVAKAYMLYRQKHLEDREVRDKLKFLMDYCDASNPASGSKYD 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               +E    A L+   +   + + L   L  +R           L D Y    +   +E
Sbjct: 118 ANANVENKNIATLI-GELPKSNFIRLNRRLLTDR-----------LRDMYGKEASDRYLE 165

Query: 316 MPQAFFM 322
           +    F+
Sbjct: 166 LLNHHFI 172


>gi|298373461|ref|ZP_06983450.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274513|gb|EFI16065.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 697

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI  AI KAF++V+                 T+     +L     A
Sbjct: 8   IVKRDGKSVPFSLDKIKSAIAKAFLSVDTFA--------------TDDDFVAILSRIHVA 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQ+QVE +LM   +  + + Y+LYR++ ++ R  +    
Sbjct: 54  NGMSVEEIQNQVETALMAEKYFAVAKSYMLYRQKHTETRETRDKLN 99



 Score = 44.5 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 112/398 (28%), Gaps = 33/398 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           ++ I+  DG  + F+  +++  + +A             V   +  ++ +G+S  +++  
Sbjct: 5   EIYIVKRDGKSVPFSLDKIKSAIAKAFLSVDTFATDDDFVAILSRIHVANGMSVEEIQNQ 64

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLR----REVLTTVYKKPQKATHHEMQCLYPEYFC 257
            + ++  + EK   Y  V   ++L + +    RE    +                     
Sbjct: 65  -VETAL-MAEK---YFAVAKSYMLYRQKHTETRETRDKLNFLISYCDASNAATGSKFDAN 119

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
             +E+   A L+   +   + + L   +  +R           + + Y        I M 
Sbjct: 120 ANVEKKNIATLI-GELPKKNFINLNRKMITDR-----------MKELYGKETADKYIGML 167

Query: 318 QAFFMRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374
              F      +   +         ++  Y  L          +   +  +        + 
Sbjct: 168 NEHF------IYKNDETSLANYCASITMYPWLLHGTTTIGGNSTPPTNLKSFAGGFVNMV 221

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434
            +   +     A  E  M   Y   +       R +   +  +  +              
Sbjct: 222 FIVSSMLSGACATPEFLMYMDYFIRMEYGDDYYRDIDRIVDLSKRQRTLDKVICDFFEQV 281

Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV- 493
             ++NQ    +     +    + D   F +L               + +W+   FMK   
Sbjct: 282 VYSINQPTGARNFQAVFWNIAYYDRPYFENLFGEFVFPDGTRPIWESLSWLQKRFMKWFN 341

Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
            +     L  P E   L    G   +  Y ++  +   
Sbjct: 342 KERTKTVLTFPVETMALLSADGDVIDKEYADFTAEMYA 379


>gi|159901278|ref|YP_001547525.1| ribonucleoside-triphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894317|gb|ABX07397.1| Ribonucleoside-triphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 755

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD ++I RA+ + F       A    +    +  L ++ V  L       
Sbjct: 21  IIKRDGREVTFDVARIERALTRCF-------AGLGRQPHTTVAELAQRVVNILAAKY--T 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
               +E +QD VE  L  +G  +  + Y+LYR E +  R  +   ++    
Sbjct: 72  TTPTVEAVQDTVEVMLQAAGEFEAAKSYILYRAEHAKKREQRPVPEAIRHA 122



 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 73/553 (13%), Positives = 158/553 (28%), Gaps = 66/553 (11%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL---QDVSSKIVLSETYKNMYD 191
              D  +AP   I+  DG  ++F+  R+E  +    +GL      +   +       +  
Sbjct: 9   PLDDRQVAPPTTIIKRDGREVTFDVARIERALTRCFAGLGRQPHTTVAELAQRVVNILAA 68

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251
             + +    A+  +   +++    +    A+  +            +   +A  H     
Sbjct: 69  KYTTTPTVEAVQDTVEVMLQAAGEF--EAAKSYILYRAEHAKKREQRPVPEAIRHAFAES 126

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY-ERDFAF-EYLGLQILYDRYFLHI 309
             +YF   +++            D+DL      ++  +R   F   +    L D  +  +
Sbjct: 127 -DQYFPSPLQKFQFFDKYSR--FDYDLGRRETWIETVDRSVNFLREISDNKLDDADYNRV 183

Query: 310 NGSRIE---MPQAFFMRVA--------MGLALKETEKEKRAVEFYNLLSSFH------FM 352
             + +E   MP    + +A        + +             F   L          F 
Sbjct: 184 RQAILEMRAMPSMRLLAMAGPAARRNNIAIYNCSYLPVDSIDSFVEALIISMSGCGVGFS 243

Query: 353 CSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411
                +        Q  +      V D   G   AL+           +  D + +R  G
Sbjct: 244 VEHKYIEQFPRVKRQSGAPATQYVVEDSAEGWADALRFGLETWFAGNDVTFDLSQLRPAG 303

Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471
           A +    G++ G  PF ++ +    A ++   R+G+    ++    D+     +      
Sbjct: 304 APLRIKGGRASGPEPFRQMLD---FARSRILARQGSFLRSIDAH--DIM--CSVGNAAVS 356

Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531
              R   M +     D  M                  D      + +          +  
Sbjct: 357 GGVRRTAMISLFDYDDHDMLTAKDG------------DFDRENSQRWNANNSAVWPASGL 404

Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
            ++++  ++ A+    +        G P I  +       P +       +N C EI L 
Sbjct: 405 TQLEIIEQVLAMVKSGR--------GEPGIFNRQSAIDMRPSRRKPAEFGTNPCGEIILR 456

Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT--IEKAKKS 649
                         NL A  A     ++ L   +  A  +               +  ++
Sbjct: 457 PYQF---------CNLTAAVARADDTFETLREKVEVATIIGTIQSMATHFPGLRPQWSEN 507

Query: 650 NHTHRAIGLGLMG 662
               R +G+ + G
Sbjct: 508 CQEERLLGVDITG 520


>gi|237722911|ref|ZP_04553392.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 2_2_4]
 gi|229447433|gb|EEO53224.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. 2_2_4]
          Length = 697

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDL 198
           I+ ++ I+  DG   +F+  +++  + +A   +   +++ V++      ++ DG +  ++
Sbjct: 2   ISSEIFIIKRDGKKEAFSLDKIKNAISKAFLSVGSFATQDVITNVLSRVSISDGTNVEEI 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEY 255
           +         L+ +   Y+   A  L  +     REV   +                   
Sbjct: 62  QN---QVEVALMAEHY-YSVAKAYMLYRQKHLEDREVRDKLKFLMDYCDASNPASGSKYD 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               +E    A L+   +   + + L   L  +R           L D Y    +   +E
Sbjct: 118 ANANVENKNIATLI-GELPKSNFIRLNRRLLTDR-----------LRDMYGKEASDRYLE 165

Query: 316 MPQAFFM 322
           +    F+
Sbjct: 166 LLNHHFI 172


>gi|160882839|ref|ZP_02063842.1| hypothetical protein BACOVA_00801 [Bacteroides ovatus ATCC 8483]
 gi|156111703|gb|EDO13448.1| hypothetical protein BACOVA_00801 [Bacteroides ovatus ATCC 8483]
          Length = 697

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDL 198
           I+ ++ I+  DG   +F+  +++  + +A   +   +++ V++      ++ DG +  ++
Sbjct: 2   ISSEIFIIKRDGKKEAFSLDKIKNAISKAFLSVGSFATQDVITNVLSRVSISDGTNVEEI 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEY 255
           +         L+ +   Y+   A  L  +     REV   +                   
Sbjct: 62  QN---QVEVALMAEHY-YSVAKAYMLYRQKHLEDREVRDKLKFLMDYCDASNPASGSKYD 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               +E    A L+   +   + + L   L  +R           L D Y    +   +E
Sbjct: 118 ANANVENKNIATLI-GELPKSNFIRLNRRLLTDR-----------LRDMYGKEASDRYLE 165

Query: 316 MPQAFFM 322
           +    F+
Sbjct: 166 LLNHHFI 172


>gi|260173775|ref|ZP_05760187.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           D2]
 gi|315922040|ref|ZP_07918280.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D2]
 gi|313695915|gb|EFS32750.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Bacteroides
           sp. D2]
          Length = 697

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDL 198
           I+ ++ I+  DG   +F+  +++  + +A   +   +++ V++      ++ DG +  ++
Sbjct: 2   ISSEIFIIKRDGKKEAFSLDKIKNAISKAFLSVGSFATQDVITNVLSRVSISDGTNVEEI 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEY 255
           +         L+ +   Y+   A  L  +     REV   +                   
Sbjct: 62  QN---QVEVALMAEHY-YSVAKAYMLYRQKHLEDREVRDKLKFLMDYCDASNPASGSKYD 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               +E    A L+   +   + + L   L  +R           L D Y    +   +E
Sbjct: 118 ANANVENKNIATLI-GELPKSNFIRLNRRLLTDR-----------LRDMYGKEASDRYLE 165

Query: 316 MPQAFFM 322
           +    F+
Sbjct: 166 LLNHHFI 172


>gi|7532767|emb|CAB87136.1| aerobic ribonucleotide reductase class Ia [Yersinia enterocolitica]
          Length = 209

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 7/206 (3%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 3   IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 62

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L  +R+
Sbjct: 63  AVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRL 122

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+D +     EFE  Y  YE+     +    +++ AV L+  M+
Sbjct: 123 LKGEDITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVELFSLMM 178

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHV 576
                TG  +I   D CN  SP    
Sbjct: 179 QERASTGRIYIQNVDHCNTHSPFDPK 204


>gi|331092351|ref|ZP_08341177.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401375|gb|EGG80961.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 764

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G +  +D SKI+ A++KA  A     A+           +       L +     
Sbjct: 8   IKKRDGRIVLYDESKIASAVLKAMEAAGEGDATD-------AAQVANDVHMEL-EKLPED 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ----SHSKSDAPIAPKLK 146
           +   IE +QD VE  LM++G  +  ++++LYR +R+++R A             +  +L 
Sbjct: 60  MPPQIEQVQDAVERELMKNGFEQSAKKFILYRAKRTNIREANTSLMRTIDEITNVDARLS 119

Query: 147 IMMDD 151
            M  D
Sbjct: 120 DMKRD 124


>gi|309388471|gb|ADO76351.1| anaerobic ribonucleoside-triphosphate reductase [Halanaerobium
           praevalens DSM 2228]
          Length = 1033

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 5/114 (4%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG    F  +KI +A+ KA  +V       ++++   +    +     +   N++ 
Sbjct: 6   VRKRNGQQVKFKLNKIEKAVNKAAASVGRNEGQIAVKIAAEVLAYLK-----IFFENENN 60

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +V +E IQD VE  L++ G+ +I + Y+LYRE+ S  R ++        I   
Sbjct: 61  NLVEVEQIQDLVEKVLIEKGYAEIAKAYILYREQHSKFRNSKKLLADAVNIMDD 114


>gi|111184260|gb|ABH08180.1| HSPV074d [Horsepox virus]
          Length = 96

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  +G   +    ++   + + C GL    +    +  +  + +Y+G++  +L T +
Sbjct: 1   MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELNTLV 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238
              + T   + P+YA + AR  +  L +E    + K
Sbjct: 61  AEIAATCTTQHPDYAILAARIAVSNLHKETKNYLVK 96


>gi|299146608|ref|ZP_07039676.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298517099|gb|EFI40980.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 697

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IIKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNVLSRVSIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              ++E+IQ+QVE +LM   ++ + + Y+LYR++  + R  +   K
Sbjct: 54  DGTNVEEIQNQVEVALMAEHYYSVAKAYMLYRQKHLEDREVRDKLK 99



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 21/187 (11%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDL 198
           I+ ++ I+  DG   +F+  +++  + +A   +   +++ V++      ++ DG +  ++
Sbjct: 2   ISSEIFIIKRDGKKEAFSLDKIKNAISKAFLSVGSFATQDVITNVLSRVSISDGTNVEEI 61

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEY 255
           +         L+ +   Y+   A  L  +     REV   +                   
Sbjct: 62  QN---QVEVALMAEHY-YSVAKAYMLYRQKHLEDREVRDKLKFLMDYCDASNPASGSKYD 117

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               +E    A L+   +   + + L   L  +R           L D Y    +   +E
Sbjct: 118 ANANVENKNIATLI-GELPKSNFIRLNRRLLTDR-----------LRDMYGKEASDRYLE 165

Query: 316 MPQAFFM 322
           +    F+
Sbjct: 166 LLNHHFI 172


>gi|291521908|emb|CBK80201.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Coprococcus catus GD/7]
          Length = 776

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 9/104 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KRNG + +FD  KI  AI +A MAVE +           +  LT++  ++L      
Sbjct: 4   KIQKRNGQMVAFDSVKILNAISRANMAVEDEVME-----PADLSYLTQKVCSQLN----P 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             +V +E +QD VE +L++  + K  + Y+LYR E + +R  +S
Sbjct: 55  DEVVTVEHVQDVVEETLIRFDYAKTAKAYILYRAEHTKIRQTES 98


>gi|332702573|ref|ZP_08422661.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552722|gb|EGJ49766.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 685

 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KR+G + ++   +I  AI+KA         +  I+   + K L  +   +L   + 
Sbjct: 3   LQIRKRDGRLETWSTDRIGEAILKAL-------KASGIKDPILSKRLACKVEKKLEGLDV 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +      E IQD VE  LM++  + + ++YVLYRE+R ++RA +           +  + 
Sbjct: 56  AEQ----EQIQDTVELVLMENRLYDVAKKYVLYREKRRELRAHKQAYLDITETIDQ-YLT 110

Query: 149 MDD 151
             D
Sbjct: 111 KAD 113


>gi|85859088|ref|YP_461290.1| anaerobic ribonucleoside triphosphate reductase [Syntrophus
           aciditrophicus SB]
 gi|85722179|gb|ABC77122.1| anaerobic ribonucleoside-triphosphate reductase [Syntrophus
           aciditrophicus SB]
          Length = 715

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
             +   ++ KR+G +  FD  KI+RAI KA       G +       + + LT + ++ L
Sbjct: 16  GALMYTEIKKRDGRLVKFDAEKITRAIAKA-------GDATGEFDYKVARKLTIKVMS-L 67

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
            +    + I+ +E+IQD VE  L+ S + +  + Y++YR++ + +R   +  + D     
Sbjct: 68  AEKIFDSRIISVEEIQDIVEEVLL-STYSRTAKAYIIYRDQHARLREITNRMEVDLVDQ- 125

Query: 144 KLKIMMDD 151
              +   D
Sbjct: 126 --YLKKKD 131


>gi|330503314|ref|YP_004380183.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           mendocina NK-01]
 gi|328917600|gb|AEB58431.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           mendocina NK-01]
          Length = 672

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G    F+ +KI RAI  A  A     A          K L++  + RL +       
Sbjct: 15  KRDGQEVPFEGAKIERAITAAGQATGEFAAI-------EAKALSDAVLARLTEFRS---- 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + +E +QD+VE  LM++G+++  R Y++YRE    +R  + H    A    +
Sbjct: 64  LDVEQVQDRVEQVLMEAGYYQTARAYIVYRERHGRLRRDRKHLIDVAASMNE 115


>gi|260912237|ref|ZP_05918789.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260633671|gb|EEX51809.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 737

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  +              + L +Q   R+    K  
Sbjct: 5   VVKRDGRIVGFNEQKIMAAVRKAMLHTDKGED----------ERLVQQIADRIGFAGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQ+QVE  LM+S    + R Y+ YR +RS  R A++           + +  +
Sbjct: 55  MT--VEDIQNQVEMELMKSSRKDVARAYIAYRNQRSVARKAKTR----DVFLEIINVKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|317476686|ref|ZP_07935930.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907149|gb|EFV28859.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 736

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 108/313 (34%), Gaps = 48/313 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +            +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LSE         Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVLNAVSQNYLHIHDKDYYPTKS 168

Query: 204 FSSR---------TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDRILTYGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEE-GVKARLLHESMMDFDLVYLANDLKYERDFAFEYL-GLQILYDRYFL 307
             +  Y   Y+    ++     E +   D  +L +  K   D+  + L GL         
Sbjct: 222 PAFDFYLAPYVRNSYIEEIKNLEELNGKDYSHLYH--KELADYLQQPLDGLTDDRRIVQH 279

Query: 308 HINGSRIEMPQAF 320
            IN +   + Q+ 
Sbjct: 280 AINKTVARVHQSM 292


>gi|218130192|ref|ZP_03458996.1| hypothetical protein BACEGG_01780 [Bacteroides eggerthii DSM 20697]
 gi|217987696|gb|EEC54024.1| hypothetical protein BACEGG_01780 [Bacteroides eggerthii DSM 20697]
          Length = 736

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 92/291 (31%), Gaps = 54/291 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI+ AI KA +  +            +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIATAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LSE         Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVLNAVSQNYLHIHDKDYYPTKS 168

Query: 204 FSSR---------TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDRILTYGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEEGV----------KARLLHESMMDFDLVYLANDLKYERD 290
             +  Y   Y+                +            YL   L    D
Sbjct: 222 PAFDFYLAPYVRNSYIEEIKNLEELNGKDYSHLYHKELADYLQQPLDGLTD 272


>gi|255103283|ref|ZP_05332260.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-63q42]
          Length = 741

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            V+KR+G +  FD  KI  AI K+F+++  KG S  +  +++   + ++   +  +    
Sbjct: 3   NVVKRDGRIVPFDEKKIINAIEKSFLSLRNKGKSE-VFDRELATLIAKKIKNKPCEKM-- 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
               HIEDIQD +E SLM S    + +EY+ YRE+R+  R  +
Sbjct: 60  ----HIEDIQDIIEFSLMASKKKDVAKEYITYREKRNIARGRK 98


>gi|302534583|ref|ZP_07286925.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
 gi|302443478|gb|EFL15294.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Streptomyces sp. C]
          Length = 660

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 107/610 (17%), Positives = 203/610 (33%), Gaps = 120/610 (19%)

Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLG-----NDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
            V D   G   A+ +        G +       D + VRG GA +    G + G  PF +
Sbjct: 137 EVEDSREGWASAMTDLIDTFMTDGEVKHSHRVYDVSRVRGKGARLKTFGGVASGPAPFGR 196

Query: 430 VANDT-------AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482
           +  +          +  +G + +G +   L T  ++++  +     +G +RR       A
Sbjct: 197 MMQEIGRILSGAFRSHERGLRARGHL---LPTESMEIDHAIAECVVSGGNRRSARMAICA 253

Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542
              P +      +      ++ +   ++   +       Y +  +  D G         A
Sbjct: 254 WNDPYIEEFLACKQDPGRHWTTNISVEIDQDFID-----YLSNGKHDDFGPGGAEM---A 305

Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602
             + RK++  +   G P        N       VG V ++N C EI L +       CNL
Sbjct: 306 YMVHRKVVEGMLANGEPGYWNSTYSNAGE----VGEVIATNPCGEIALEA----WENCNL 357

Query: 603 GSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           G INL A   +    FD   L        R L      + +  E+A++    +R IG+G 
Sbjct: 358 GHINLDAFVLDGHEAFDESGLKRAHELMTRFLIRATYGDVNDAEQAERLA-ANRRIGVGH 416

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           +G Q+ L    + Y+                                             
Sbjct: 417 LGVQAFLAKQGVRYS--------------------------------------------E 432

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELK--KRVKTIGMRNSNCMAIAPTATIANICGV 778
            P  +   L   R +  + + +R    EL+  + VK        C  +APT TIA + G 
Sbjct: 433 APAHTRFRLLLGRMKRVVRQAARDYAFELRIPEPVK--------CTTVAPTGTIAKLPGT 484

Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSF---LVNELKQRDLWDEAMISDLKYHDGSIG--N 833
           ++ I P Y   +++      F++ +      V   + +    E    D   +   +    
Sbjct: 485 TEGIHPIYARTFLRRVR---FSMADPDQAAKVAAFEAQGYPVEVCQYDPSGNTFIVVFPT 541

Query: 834 IERIPDDL------KKIHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDE-PSGKKL 885
           +ER+ +++        +  +A E+    L+   +  Q ++ D A S    + E     + 
Sbjct: 542 LERLVEEVEARGYPADLVESADELSLNQLLAFQAMYQTEYADNAVSFTANVPEGLDLDET 601

Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
             +  +AWL  LK T  +   +        +   + + +   + +              +
Sbjct: 602 ADV-IEAWLPLLKGTTVMVDGTRPQAPYERISRAEFEKHETYIVED-------------S 647

Query: 946 SDTECE--VC 953
            D EC    C
Sbjct: 648 IDEECSTGAC 657


>gi|288928325|ref|ZP_06422172.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331159|gb|EFC69743.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 737

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  +              + L +Q   R+    K  
Sbjct: 5   VVKRDGRIVGFNEQKIMAAVRKAMLHTDKGED----------ERLVQQIADRIGFVGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +EDIQ+QVE  LM+S    + R Y+ YR +RS  R A++           + +  +
Sbjct: 55  MT--VEDIQNQVEMELMKSSRKDVARAYISYRNQRSVARKAKTR----DVFLEIINVKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|255691221|ref|ZP_05414896.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           finegoldii DSM 17565]
 gi|260623135|gb|EEX46006.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           finegoldii DSM 17565]
          Length = 797

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFNATGIQDE------QQLVADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKALMKVRP-EVAKKYIIYREWRNTERDKKTQMK 101



 Score = 38.7 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   +G+QD       +            ++  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAISKAFNATGIQDEQQLVADITMNVISQFATPTITVEEI 64

Query: 199 ETALIFS 205
           +  +  +
Sbjct: 65  QDLVEKA 71


>gi|332300584|ref|YP_004442505.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177647|gb|AEE13337.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 799

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A       +  ++      +T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIATGQTECLQEAKI------VTMGVLARIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +      +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRNLDGIVTI 110


>gi|331000300|ref|ZP_08323983.1| anaerobic ribonucleoside-triphosphate reductase [Parasutterella
           excrementihominis YIT 11859]
 gi|329572332|gb|EGG53990.1| anaerobic ribonucleoside-triphosphate reductase [Parasutterella
           excrementihominis YIT 11859]
          Length = 669

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ--DIIKNLTEQTVTRLLQH 86
           + VIKR+G V  FD SKI+ A+ KA  A     A+ + R+   +++  L +Q V      
Sbjct: 5   MYVIKRDGTVKDFDISKIAAALEKAGKATGEFDAATANRITHIEVMNRLAQQNVA----- 59

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   IE IQD VE +L  +G  K  R Y++YRE+R+  R A+           +
Sbjct: 60  -----TPTIEQIQDAVENALFDTGFRKTLRAYIVYREQRAKARDARRSLVDVESSMNE 112


>gi|307565599|ref|ZP_07628079.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella amnii
           CRIS 21A-A]
 gi|307345758|gb|EFN91115.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella amnii
           CRIS 21A-A]
          Length = 698

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++   + KR+G    F   KI  AI+KAF +V       +  V  I+ +LT      +  
Sbjct: 1   MQNFTITKRDGSKEMFSLDKIMGAILKAFESVNAPTDLAA--VSKILSDLT--IHNDIT- 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                    +EDIQ+QVE +LM+ G++ + + +++YR + S  R  Q   K
Sbjct: 56  ---------VEDIQNQVEQALMKEGYYDVAKSFIVYRHQHSQDRETQDKIK 97



 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
             I   DG+   F+  ++   + +A   +   +    +S+   ++  ++ ++  D++  +
Sbjct: 4   FTITKRDGSKEMFSLDKIMGAILKAFESVNAPTDLAAVSKILSDLTIHNDITVEDIQNQV 63

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLR----REVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             +       +  Y  V   F++ + +    RE    +    +                 
Sbjct: 64  EQAL-----MKEGYYDVAKSFIVYRHQHSQDRETQDKIKFLTEYCGASNAATGSKYDANA 118

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +E    A L+   +     + +   L  +R
Sbjct: 119 NVENKNIATLI-GELPKQGFIRINRRLLTDR 148


>gi|313885875|ref|ZP_07819615.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924630|gb|EFR35399.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 799

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A       +  ++      +T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIATGQTECLQEAKI------VTMGVLARIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +      +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRNLDGIVTI 110


>gi|299148081|ref|ZP_07041144.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
 gi|298514264|gb|EFI38150.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_23]
          Length = 797

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGIQDE------QQLVADITMNVISQFT-----T 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVRP-EVAKKYIIYREWRNTERDKKTQMKQ 102



 Score = 38.3 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   +G+QD       +            ++  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAISKAFSATGIQDEQQLVADITMNVISQFTTPTITVEEI 64

Query: 199 ETALIFS 205
           +  +  S
Sbjct: 65  QDLVEKS 71


>gi|295102976|emb|CBL00520.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 723

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G  A  S   ++ I  +      +  Q   
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSV-GGQARLS---REQITQIAAAVTDQCQQL-- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E++QD VE  LM    H + R Y+ YR  +S  R  
Sbjct: 55  -NRAVSVEEVQDLVENQLMDIQAHDVARHYITYRYVQSLKRQT 96


>gi|160883453|ref|ZP_02064456.1| hypothetical protein BACOVA_01422 [Bacteroides ovatus ATCC 8483]
 gi|237720231|ref|ZP_04550712.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_2_4]
 gi|293371155|ref|ZP_06617692.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
 gi|156111173|gb|EDO12918.1| hypothetical protein BACOVA_01422 [Bacteroides ovatus ATCC 8483]
 gi|229450783|gb|EEO56574.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_2_4]
 gi|292633813|gb|EFF52365.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CMC 3f]
          Length = 797

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGIQDE------QQLVADITMNVISQFT-----T 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVRP-EVAKKYIIYREWRNTERDKKTQMKQ 102



 Score = 38.3 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   +G+QD       +            ++  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAISKAFSATGIQDEQQLVADITMNVISQFTTPTITVEEI 64

Query: 199 ETALIFS 205
           +  +  S
Sbjct: 65  QDLVEKS 71


>gi|210621578|ref|ZP_03292714.1| hypothetical protein CLOHIR_00659 [Clostridium hiranonis DSM 13275]
 gi|210154701|gb|EEA85707.1| hypothetical protein CLOHIR_00659 [Clostridium hiranonis DSM 13275]
          Length = 788

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F+ +KI+RAI  A  A +            + ++LT++ +  L +     
Sbjct: 5   IKKRDGRTIPFNENKITRAIFLA--ASDVAKKEGKAPDFKMAEDLTQEVIALLERRF-GE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
            +  +ED+QD V   L+++GH K + EY+LYR ER+ VR +++                 
Sbjct: 62  EVPSVEDVQDAVVKVLIETGHAKTSEEYILYRAERTRVRNSKTRLMKAIEKITFSDAGDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANIDGNTAMGTMLQYG 143


>gi|145219615|ref|YP_001130324.1| anaerobic ribonucleoside triphosphate reductase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205779|gb|ABP36822.1| anaerobic ribonucleoside-triphosphate reductase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 717

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    FD  KI+ AI +A  AV           +     L    + RL       
Sbjct: 11  IIKRDGTNAPFDTEKITYAIFRALRAVGKP-------DRTKAAKLCGDVLARL-HELAGE 62

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
               +E +Q+ VE +L  +G  +  + Y++YR +   +R A+    +   +   L 
Sbjct: 63  NQPTVEGVQNLVEKTLFSTGEFEAAKAYIIYRHQHRTLRDAKEIFSNVDLVDQYLN 118


>gi|52549681|gb|AAU83530.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos30H9]
          Length = 748

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA       GA+      +I + LT + +    Q    
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKA-------GAATGEFDSEIAQKLTLKVLNLAQQAIPR 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 57  D-IPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIRDITSKANVD 104


>gi|160943676|ref|ZP_02090908.1| hypothetical protein FAEPRAM212_01171 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445131|gb|EDP22134.1| hypothetical protein FAEPRAM212_01171 [Faecalibacterium prausnitzii
           M21/2]
          Length = 723

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G  A  S   ++ I  +      +  Q   
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSV-GGQARLS---REQITQIAAAVTDQCQQL-- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E++QD VE  LM    H + R Y+ YR  +S  R  
Sbjct: 55  -NRAVSVEEVQDLVENQLMDIQAHDVARHYITYRYVQSLKRQT 96


>gi|307718381|ref|YP_003873913.1| anaerobic ribonucleoside triphosphate reductase [Spirochaeta
           thermophila DSM 6192]
 gi|306532106|gb|ADN01640.1| anaerobic ribonucleoside triphosphate reductase [Spirochaeta
           thermophila DSM 6192]
          Length = 689

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           S     P K     V+KR+G +  +D S+I+RA++KA  +V G+       + + + +L 
Sbjct: 6   SSRREAPAKY----VVKRDGQIEFYDRSRITRAVLKAIESVRGEKD---KPLAEHLTDLV 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           E+ +  L++         IE+IQD VE  L++     + + Y+LYR + S +R  +    
Sbjct: 59  EEKLRALMRDRHPNSAPAIEEIQDLVETVLIEERQVDLAKAYILYRAQHSIMRDTRKLML 118

Query: 137 SDAPIAP 143
             + I  
Sbjct: 119 DISAIMD 125


>gi|305682409|dbj|BAJ16292.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   +R LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFGL-----WQTNEHFIPDVIRFLDNVLEDFINKAPDTMSS 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKAWNKKIFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+       R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIHER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           IAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ 
Sbjct: 147 IAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQ 201


>gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
 gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
          Length = 424

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 12/107 (11%)

Query: 29  VQV---IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +++   IKR+     F  +KIS AI+KA   V     +           +++     LL+
Sbjct: 1   MKITHLIKRDFTTKPFQLNKISNAILKAMTTVNHGDKAD-------ADLISKNVHEALLE 53

Query: 86  HNKS--ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             ++       +E++QD VE  LM+ G   + + Y+LYR E+S  R 
Sbjct: 54  REETVVNYTPTVEEVQDFVETKLMEGGFFDVAKAYILYRNEQSQKRK 100


>gi|7532415|emb|CAB86983.1| aerobic ribonucleotide reductase class Ia [Acinetobacter
           calcoaceticus]
          Length = 209

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 84/205 (40%), Gaps = 7/205 (3%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 3   IECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 62

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L   R+
Sbjct: 63  AVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRL 122

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+  M+
Sbjct: 123 LKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMM 178

Query: 551 TMLFETGHPWITFKDPCNIRSPQQH 575
                TG  +I   D CN  SP   
Sbjct: 179 QERASTGRIYIQNVDHCNTHSPFDP 203


>gi|225018290|ref|ZP_03707482.1| hypothetical protein CLOSTMETH_02234 [Clostridium methylpentosum
           DSM 5476]
 gi|224948927|gb|EEG30136.1| hypothetical protein CLOSTMETH_02234 [Clostridium methylpentosum
           DSM 5476]
          Length = 775

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G   +F+  K+++AI   F A +  G     R  +I  N+  +   ++      
Sbjct: 4   KIIKRDGREAAFNIDKVTQAI---FRAGQSVGDLDYSRANEIAGNVYARINEQMEDSVP- 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +E +QD VE  L+  G  +I + Y+LYR ER+ VR   +              M 
Sbjct: 60  ----TVEQVQDFVEKELIAEGLSEIAKHYILYRAERTRVREMNTKLMKIYEDLTFKSAME 115

Query: 150 DDGTLISFNSK 160
           DD    + N  
Sbjct: 116 DDNKRENANID 126



 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205
           KI+  DG   +FN  ++   +  A   + D+      +E   N+Y  ++E       +  
Sbjct: 4   KIIKRDGREAAFNIDKVTQAIFRAGQSVGDLDYSR-ANEIAGNVYARINEQ------MED 56

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
           S   +E+  ++  V    + E L       +  + ++    EM     + +     +   
Sbjct: 57  SVPTVEQVQDF--VEKELIAEGLSEIAKHYILYRAERTRVREMNTKLMKIYEDLTFKSAM 114

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306
                    + D       +       +   G +  Y  Y 
Sbjct: 115 EDDNKRENANIDGDTAMGTM-----LKYGSEGAKQFYQMYV 150


>gi|14251036|ref|NP_116398.1| T45 [Tupaiid herpesvirus 1]
 gi|14210730|gb|AAK57093.1| T45 [Tupaiid herpesvirus 1]
          Length = 1035

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 107/600 (17%), Positives = 196/600 (32%), Gaps = 80/600 (13%)

Query: 339  AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398
              ++ + L S   + S   L  +G         F   + D    ++       +L     
Sbjct: 472  FEQYLDDLYSERLLGSVNALAQAGLNESAPQEGFSGRIDDQDVEVWLDENAQRLLGMMKD 531

Query: 399  GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458
            GL       RG               +  + +    A       +R   V  Y + WH  
Sbjct: 532  GLALSLNVTRGY-----------GHAVDVIYLLAAQARLCRSRQRRATFVRVYFDLWHTQ 580

Query: 459  VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE-VSDLHDLYGKE 517
                L+L + +         +  A  +P+LF +R           P E  ++L++  G E
Sbjct: 581  AAAILELIERSAS---GLDGVEFAVNVPNLFFERERHAKSHWTMFPYEHCAELNERTGAE 637

Query: 518  FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577
            F   Y   ER       +    +S   L+ +++     TG   + F D   +  P     
Sbjct: 638  FATVYVQKERN------RCGWSVSLGWLYARLVR-AVLTGRLAVVFPDNVGVYGPLLGTM 690

Query: 578  VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD------------------ 619
                +       LN   E        ++N+   +  N  D                    
Sbjct: 691  QNVPTLGPHVDMLNVCVERHVPVVRFNVNVDDCYEENVPDGRVSEMDLYIVSSGLAISLC 750

Query: 620  KLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678
                 +R AV   D +++ I      +   +   +R + +G  G  + L  + + Y S E
Sbjct: 751  HFRRLVRAAVVAGDLLLEEIFEQQGPQLGVAFQRYRPLCVGYSGLHTLLLRVGVEYDSDE 810

Query: 679  AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737
            AV +A+   E + + A+  SV+L        S F  + + +G+F  +  G       E  
Sbjct: 811  AVTVAERLAEHLYYEALRTSVDLCIAGLPACSWFGHTRYSRGLFAFERHGRRPCSVPERL 870

Query: 738  MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797
                    WD L++ +   GMRN+  +++ P    A + GVS S  P     + +     
Sbjct: 871  --------WDALREDMSAFGMRNAQLVSLGPGWEQARLAGVSASFYPLPHRAFREPCR-- 920

Query: 798  DFTVVNSFLVNELKQRDLWDEAMISDLKYHDG-------------SIGNIERIPDDLKKI 844
             F  V++ ++  +      DE          G             S     R+  DL   
Sbjct: 921  -FPGVDASVLEAVAPFGGADEQERRPSIRMPGVSHVLAERVQLLRSARPSCRLAPDLPP- 978

Query: 845  HATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLK-TTY 901
              TA+ +          R Q  ++D A +  +Y+   + ++ +    + A   G K   Y
Sbjct: 979  -GTAYRLS---------RAQEPYVDHAVAPVIYVKRAAAEETVAVCLKMANRHGAKVGVY 1028


>gi|312142435|ref|YP_003993881.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Halanaerobium sp. 'sapolanicus']
 gi|311903086|gb|ADQ13527.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Halanaerobium sp. 'sapolanicus']
          Length = 798

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + VIKR+G    +   KI  AI +A +             +   + +  +    L + 
Sbjct: 4   SDMTVIKRDGREVEYKREKIKTAIHRAMIESGEDAG------EKDAEKVAVEVENSLKKE 57

Query: 87  NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
             S   +  +E+IQD VE  LM+S +    + Y+LYR +R   R  +     +  +
Sbjct: 58  FYSKDKVPKVEEIQDLVEEELMKSAYVTTAKTYILYRSKRQQSRLQRKSKDKEGAL 113


>gi|298385135|ref|ZP_06994694.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_14]
 gi|298262279|gb|EFI05144.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_14]
          Length = 797

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q +I ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFSATGIQDE------QQLIADVTMSVISQFTN----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKALMKVRP-EVAKKYIIYREWRNTERDKKTQMK 101


>gi|66391288|ref|YP_238597.1| ORF033 [Staphylococcus phage Twort]
 gi|62637218|gb|AAX92329.1| ORF033 [Staphylococcus phage Twort]
          Length = 300

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 127/303 (41%), Gaps = 33/303 (10%)

Query: 490 MKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
           M+ + ++  +  F+  +V   +   L        Y+ +    D  + K + +     +  
Sbjct: 1   MELLKEDKYYYTFNVYDVKQKYGFTLNEINMSEYYDIFVNDDDIRKEKYYTR----DIMT 56

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE--------------ITLNSS 593
            +     E+G+P++ + D  N   P + +G V  SNLC E               + N +
Sbjct: 57  DIARTQLESGYPYVFYIDNANDNHPLKKLGKVQMSNLCCEVTQLQEVSDIFPYLQSHNDT 116

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652
                VC LGS+NL+            L  ++ + +R L  V D +N   +   +K+N  
Sbjct: 117 IGNDVVCTLGSLNLVNVVEKGL-----LKESVDSGIRSLSKVTDLMNVPFLPSVQKANDE 171

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSF 711
            RAIGLG M +   L    + Y S E+++IA+     I +++I +S+ELA+E G  +  F
Sbjct: 172 LRAIGLGAMNWHGLLAKNMLSYGSRESLDIANSLFSAIRYYSIKSSMELAKETGKVFKGF 231

Query: 712 KGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           K S +  G      I    E R +        +   +   W+ L K VK  GM N     
Sbjct: 232 KESEYYTGEVFSSYIQKSHEPRTKKAKKVLEKVYIPTEEDWNSLSKDVKEYGMYNGYLNN 291

Query: 766 IAP 768
           +AP
Sbjct: 292 LAP 294


>gi|258404206|ref|YP_003196948.1| anaerobic ribonucleoside triphosphate reductase [Desulfohalobium
           retbaense DSM 5692]
 gi|257796433|gb|ACV67370.1| anaerobic ribonucleoside-triphosphate reductase [Desulfohalobium
           retbaense DSM 5692]
          Length = 697

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P  +   P K     + KR+G + ++   +I  AI+KA         +  ++   +   L
Sbjct: 9   PRSSTTNPPKY----IRKRDGRLETWALDRIGEAILKAL-------KASGVKDPLLANRL 57

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             +   +L            E +QD VE  LM+S  +++ R Y++YRE+R  +R+ Q   
Sbjct: 58  ARKVEQKLE----GIETPEQEQVQDMVELVLMESRLYQVARRYIVYREKRRQLRSQQEAF 113

Query: 136 KSDAPIAPKLKIMMDD 151
                      +  +D
Sbjct: 114 LDIRETIDS-YVNKED 128


>gi|29347408|ref|NP_810911.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253570570|ref|ZP_04847978.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_6]
 gi|29339308|gb|AAO77105.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251839519|gb|EES67602.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           1_1_6]
          Length = 797

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q +I ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFSATGIQNE------QQLIADVTMSVISQFTN----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKALMKVRP-EVAKKYIIYREWRNTERDKKTQMK 101


>gi|319901859|ref|YP_004161587.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides helcogenes P 36-108]
 gi|319416890|gb|ADV44001.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides helcogenes P 36-108]
          Length = 735

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 92/273 (33%), Gaps = 45/273 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  +            +I  +T+          K  
Sbjct: 5   VIKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDLQLIHQITDHI------SFKGN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  SQMTVEAIQDMVEVELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LS    E     Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSDEVLEAVSQNYLHIHDKDYYPTKS 168

Query: 204 FSSRTLIEKE---------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDHILKNGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEE-GVKARLLHESMMDFDLVYL 281
             +  Y   Y+    ++     E +   D  +L
Sbjct: 222 PAFDFYLAPYVRNSYIEEIKNLEELNGKDYSHL 254


>gi|153809477|ref|ZP_01962145.1| hypothetical protein BACCAC_03795 [Bacteroides caccae ATCC 43185]
 gi|149127858|gb|EDM19081.1| hypothetical protein BACCAC_03795 [Bacteroides caccae ATCC 43185]
          Length = 797

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q +I ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGIQDE------QQLIADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE +LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKALMKVRP-EVAKKYIIYREWRNTERDKKTQMK 101



 Score = 38.3 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   +G+QD       +            ++  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAISKAFSATGIQDEQQLIADITMNVISQFATPTITVEEI 64

Query: 199 ETALIFS 205
           +  +  +
Sbjct: 65  QDLVEKA 71


>gi|283768712|ref|ZP_06341623.1| anaerobic ribonucleoside-triphosphate reductase [Bulleidia extructa
           W1219]
 gi|283104498|gb|EFC05871.1| anaerobic ribonucleoside-triphosphate reductase [Bulleidia extructa
           W1219]
          Length = 732

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI +A+ KA  A E    +     +++I+ ++E  V +    N+
Sbjct: 1   MKVIKRSGEEVLFDANKIKKAVQKANEATEVHHQAG----EEVIQQISEGVVAKCKALNR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           S   V +E+IQD VE +LM++  +++   Y+ YR ER+ VR A
Sbjct: 57  S---VSVEEIQDMVENALMEAKVYQVAHNYITYRYERALVRKA 96


>gi|310780509|ref|YP_003968841.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309749832|gb|ADO84493.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 783

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 37/290 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G    F+  KI  AI KA +A             DI K  +    +++L  + 
Sbjct: 1   MFVIKRDGTKVPFNKEKIINAIEKAGIAAGK----------DIPKEFSVTAASKILNLSS 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E IQD VE  LM   + ++ ++Y+LYR+ R+  R  ++H          + + 
Sbjct: 51  DTE---VESIQDMVEKELM-QEYPEVAKKYILYRDMRNVERHKRTHI--KKAFDGIVTVE 104

Query: 149 MDDGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLSE--TYKNMYDGLSESDLETALI 203
            ++    + N         ++  A    +D + K +L++  +  +M   +   DL+    
Sbjct: 105 KNNINKENANMAGDTPSGQMMTFASETTKDYTHKYLLNQEYSRAHMSGDIHIHDLDY--- 161

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                       Y   T+  +   L++        K  K    +    Y        +  
Sbjct: 162 ------------YPTKTSTCVQYDLKKLFDNGFSSKHGKIREPKSISTYAVLATIIFQTN 209

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313
              +   +++  FD       LK  R   F Y  L  L   Y    +   
Sbjct: 210 QNEQHGGQAIPAFDFFMAPGVLKSFR-RHFRYRALTFLEFDYIEEKSKEV 258


>gi|260173949|ref|ZP_05760361.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           D2]
 gi|315922217|ref|ZP_07918457.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D2]
 gi|313696092|gb|EFS32927.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D2]
          Length = 797

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A   +        Q ++ ++T   +++        
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAFSATGFQDE------QQLVADITMNVISQFT-----T 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVRP-EVAKKYIIYREWRNTERDKKTQMKQ 102



 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   +G QD       +            ++  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAISKAFSATGFQDEQQLVADITMNVISQFTTPTITVEEI 64

Query: 199 ETALIFS 205
           +  +  S
Sbjct: 65  QDLVEKS 71


>gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
 gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
          Length = 424

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+    SF   KI+ A++KA +AV           +   + + +     LL+   + 
Sbjct: 6   IKKRDYSTKSFHLDKITAAVLKAMLAVNTGS-------EKEAEKVAKSVYDVLLERKNND 58

Query: 91  L--IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
              I  IE++QD VE  LM+ G  ++ + Y+LYR +R+  R  
Sbjct: 59  KSYIPTIEEVQDIVETKLMECGFPEVAKAYILYRNKRTQERKT 101


>gi|139437341|ref|ZP_01771501.1| Hypothetical protein COLAER_00480 [Collinsella aerofaciens ATCC
           25986]
 gi|133776988|gb|EBA40808.1| Hypothetical protein COLAER_00480 [Collinsella aerofaciens ATCC
           25986]
          Length = 740

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A + VE        +V    +N+ E           
Sbjct: 1   MKIIKRSGTEVTFDIDKIVNAIRAANLEVEEGSRLTDRQVIYAAQNVAEACEKA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  +M+   +++ R Y++YR  +S  R  
Sbjct: 55  -GHTVSVEEIQDLVEDEIMRLDCYEVARHYIIYRYVQSLKRQK 96


>gi|305682403|dbj|BAJ16289.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 92/235 (39%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   +R LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFGL-----WQSNEHFIPDIIRFLDNVLEDFINKAPNTMSS 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+     + R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIQER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           IAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ 
Sbjct: 147 IAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQ 201


>gi|317152686|ref|YP_004120734.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942937|gb|ADU61988.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 686

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G + ++   +I  AI KA            I+   +   L  +   +L      
Sbjct: 4   QIIKRDGRIETWSTKRIGVAIFKAL-------KGSGIKDPMLADRLAGKVEAKLA----D 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                 E +QD V+  LM++  +K+   Y+LYRE+R ++R           +   
Sbjct: 53  MDTPEQEQVQDMVQQVLMEARLYKVAERYILYREKRRELRTQDQSFMDIVGVTES 107


>gi|257456079|ref|ZP_05621282.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           vincentii ATCC 35580]
 gi|257446537|gb|EEV21577.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           vincentii ATCC 35580]
          Length = 698

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+ +KI  AI KA  AV G         ++    LT     +L Q   S 
Sbjct: 27  VVKRSGDIEVFNRNKIKIAIQKAIEAVTG------AADEEKADVLTAAVEEKLTQLMASR 80

Query: 91  L---IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               I  IE+IQD +E  L++     I + ++LYR +R  VR A+ 
Sbjct: 81  HAHSIPAIEEIQDIIENVLIERNEASIAKAFILYRAKREAVRDAER 126


>gi|95930914|ref|ZP_01313644.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133040|gb|EAT14709.1| Ribonucleoside-triphosphate reductase, anaerobic [Desulfuromonas
           acetoxidans DSM 684]
          Length = 674

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G    FD  +I  AI +A       G       +     LT+QT+  L      
Sbjct: 18  KVVKRDGTSVPFDSERIRFAIARA-------GKVTGEFDESEAALLTQQTLKVLRHRFPF 70

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQD VE +L+ + H    R YV+YRE+   +R  Q      A    +
Sbjct: 71  QA-PKVEQIQDVVEQTLISANHFATLRAYVVYREQHQKLRQDQKTVVDVASSINE 124


>gi|305682407|dbj|BAJ16291.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 92/235 (39%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   +R LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFGL-----WQSNEHFIPDIIRFLDNVLEDFINNAPDTMSN 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+     + R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIQER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           IAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ 
Sbjct: 147 IAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQ 201


>gi|218961544|ref|YP_001741319.1| Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive
           ribonucleoside-triphosphate reductase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730201|emb|CAO81113.1| Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive
           ribonucleoside-triphosphate reductase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 710

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KRNG +  F   KI++AI  A +A    G   +  +   + NL +Q +          
Sbjct: 7   IRKRNGSIVPFKQQKIAKAIESAGLATGEFGKDIAGVLTLRVLNLAQQVIQ--------D 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA--AQSHSKSDAPIAPKLKIM 148
            I  +E IQD VE  L+ S + K  + Y++YR++ S +R   +++  +       KL   
Sbjct: 59  EIPEVEKIQDIVEEVLLASPYKKTAKAYIIYRDQHSRIRELVSKAGVELIDQYLEKLDWQ 118

Query: 149 MDDGTLISFNSKRLEMIVEEA---CSGLQDVSSKIV 181
           +++ + ++++ + L   +         L  +    +
Sbjct: 119 VNENSNMAYSLQGLNNYIASEVSKTYWLNKIYPPEI 154


>gi|241765490|ref|ZP_04763455.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax
           delafieldii 2AN]
 gi|241364744|gb|EER59744.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax
           delafieldii 2AN]
          Length = 672

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VI+R+G    FD  +I  A+ +A  A +   A+           LT Q V  L+     
Sbjct: 11  EVIQRSGQRVPFDAERIRAALQRAGKATDEFDAA-------EAALLTAQVVKVLIHRFH- 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQD  E +L+ + H    R Y++YRE+ + +RA +           +
Sbjct: 63  GEAPTVEQIQDVAEQTLIAANHLATARAYIVYREQHATLRADKQTLVDVESSINE 117


>gi|300698167|ref|YP_003748828.1| ribonucleotide reductase oxidoreductase protein (nrdD) [Ralstonia
           solanacearum CFBP2957]
 gi|299074891|emb|CBJ54460.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum CFBP2957]
          Length = 685

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  FD  KI RAI           A+     ++    +  +   R+L H   
Sbjct: 5   QVMKRDGTLVDFDAEKIRRAI-----------AAAGHATREFDMPMAAELTGRVLWHLAD 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++          +  +  
Sbjct: 54  VPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKTTLVDVESTMDE-YLEQ 112

Query: 150 DD 151
            D
Sbjct: 113 RD 114


>gi|332526298|ref|ZP_08402426.1| anaerobic ribonucleoside triphosphate reductase [Rubrivivax
           benzoatilyticus JA2]
 gi|332110436|gb|EGJ10759.1| anaerobic ribonucleoside triphosphate reductase [Rubrivivax
           benzoatilyticus JA2]
          Length = 675

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
           D    PS       +   + VIKR G   +FDP+KI+        A+   GA+       
Sbjct: 3   DAALPPS----ADTQAAPLAVIKREGRTVAFDPAKIAD-------ALARAGAATGEYDAA 51

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               LT+Q   RL +         +E IQD+VE  L ++GH    R Y++YRE+R  +R 
Sbjct: 52  RAAELTQQVTERLRRRVTG-----VEQIQDEVERVLQEAGHFDTARAYIVYREQRRALRQ 106

Query: 131 AQSHSKSDAPIAPK 144
            +S +        +
Sbjct: 107 DRSVAVDVERSVNE 120


>gi|295084957|emb|CBK66480.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 804

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF       AS     Q ++ ++T   +++      + 
Sbjct: 15  IIKRDGKREDFSISKIKNAISKAF------SASGIQDEQQLVADITMNVISQF-----AT 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 64  PTITVEEIQDLVEKSLMKVRP-EVAKKYIIYREWRNTERDKKTQMKQ 109



 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+QD       +            ++  ++
Sbjct: 12  EICIIKRDGKREDFSISKIKNAISKAFSASGIQDEQQLVADITMNVISQFATPTITVEEI 71

Query: 199 ETALIFS 205
           +  +  S
Sbjct: 72  QDLVEKS 78


>gi|167762161|ref|ZP_02434288.1| hypothetical protein BACSTE_00513 [Bacteroides stercoris ATCC
           43183]
 gi|167699804|gb|EDS16383.1| hypothetical protein BACSTE_00513 [Bacteroides stercoris ATCC
           43183]
          Length = 736

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 93/273 (34%), Gaps = 45/273 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VLKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LSE         Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVLDAVSQNYLHIHDKDYYPTKS 168

Query: 204 FSSR---------TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDRILTYGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEEG-VKARLLHESMMDFDLVYL 281
             +  Y   Y+    ++     E +   D  +L
Sbjct: 222 PAFDFYLAPYVRNSFIEEVKNLEELNGEDYSHL 254


>gi|237714067|ref|ZP_04544548.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D1]
 gi|262407118|ref|ZP_06083667.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_22]
 gi|294644010|ref|ZP_06721790.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CC 2a]
 gi|298479624|ref|ZP_06997824.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D22]
 gi|229445891|gb|EEO51682.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D1]
 gi|262355821|gb|EEZ04912.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_22]
 gi|292640647|gb|EFF58885.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides ovatus
           SD CC 2a]
 gi|298274014|gb|EFI15575.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D22]
          Length = 797

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF       AS     Q ++ ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAF------SASGIQDEQQLVADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVRP-EVAKKYIIYREWRNTERDKKTQMKQ 102



 Score = 38.7 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+QD       +            ++  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAISKAFSASGIQDEQQLVADITMNVISQFATPTITVEEI 64

Query: 199 ETALIFS 205
           +  +  S
Sbjct: 65  QDLVEKS 71


>gi|305682401|dbj|BAJ16288.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 92/235 (39%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   +R LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFEL-----WQSNEHFIPDIIRFLDNVLEDFINKAPNTMSN 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+     + R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIQER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           IAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ 
Sbjct: 147 IAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQ 201


>gi|228470172|ref|ZP_04055079.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           uenonis 60-3]
 gi|228308123|gb|EEK16986.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           uenonis 60-3]
          Length = 799

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 12/116 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+IKR+G    F PSKI  A++KA++A                K +T   + R+ Q    
Sbjct: 7   QIIKRDGLQEPFTPSKIENAVLKAYIATGQT------ECLQEAKTVTMGVLGRIEQE--- 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             ++ +E++QD VE  LM+    ++ + Y+LYRE R+  R  +S  K +      +
Sbjct: 58  --VISVEEVQDLVESELMKV-QPEVAKRYILYREWRNTERQKKSELKRNLDGIVTI 110


>gi|239909067|ref|YP_002955809.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
 gi|239798934|dbj|BAH77923.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
          Length = 699

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G + +FD  KI  A+ +A       GA+     +D    LT Q V  L      
Sbjct: 7   RIRKRDGQIVTFDADKILSAVRRA-------GAATGEFGEDEAWLLTAQVVKVLSHRF-I 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I  IE IQD VE + + + H +  R Y +YRE+R+ +R  +      A    +
Sbjct: 59  GQIPDIERIQDIVEQAFVSANHFRTLRAYSVYREQRARLREDKKTVVDVAASINE 113


>gi|329955958|ref|ZP_08296761.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides clarus
           YIT 12056]
 gi|328525338|gb|EGF52388.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides clarus
           YIT 12056]
          Length = 736

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 107/313 (34%), Gaps = 48/313 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VLKRDGRVVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGD 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  AQMTVEAIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQD-VSSKIVLSETYKNM---YDGLSESDLETALI 203
           D T  + N        M+++ A    +  V   ++  E    +   Y  + + D      
Sbjct: 109 DITRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVLDAVSHNYLHIHDKDYYPTKS 168

Query: 204 FSSR---------TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDRILTYGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEE-GVKARLLHESMMDFDLVYLANDLKYERDFAFEYL-GLQILYDRYFL 307
             +  Y   Y+    ++     E +   D  +L    K   D+  + L GL         
Sbjct: 222 PAFDFYLAPYVRNSYIEEIKNLEELNGKDYSHLYQ--KELTDYLQQPLDGLTDDRRIVQH 279

Query: 308 HINGSRIEMPQAF 320
            +N +   + Q+ 
Sbjct: 280 AVNKTVARVHQSM 292


>gi|313113153|ref|ZP_07798780.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624547|gb|EFQ07875.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 723

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V G+      ++  I   +T+Q    L +   
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVSGQSRLTKDQITQIAAAVTDQ-CQALNR--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E++QD VE  LM    H + R Y+ YR  +S  R  
Sbjct: 57  ---AVSVEEVQDMVENQLMDIKAHDVARHYITYRYVQSLKRQT 96


>gi|255011119|ref|ZP_05283245.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis 3_1_12]
 gi|313148930|ref|ZP_07811123.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis 3_1_12]
 gi|313137697|gb|EFR55057.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis 3_1_12]
          Length = 797

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KAF A            Q +I ++T   + +      ++
Sbjct: 8   IIKRDGKREDFSISKIKNAVTKAFSATGINDE------QQLIADITMNVIGQF-----AS 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKELMKVRP-EVAKKYIIYREWRNTERDKKTQMK 101


>gi|62996794|gb|AAY24447.1| ribonucleoside-diphosphate reductase large chain [Iridovirus IV31]
          Length = 198

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 32/221 (14%)

Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           R+G+   YL+  H ++  FL++RK+TGD   R  +++    I D FM+ + +        
Sbjct: 3   RRGSYAMYLDISHPEIIPFLEMRKSTGDHNIRCLNLHHGINITDKFMELIER-------- 54

Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                          E   ++     D    +V  KISA  LW+++L    +TG P+I F
Sbjct: 55  ------------CTKEKNVDDTWNLIDPHSKEVTDKISAKELWQRILETRLKTGEPYICF 102

Query: 564 KDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620
            D CN       V     +  SNLC+E+ L + S  TAVC L S+NL  +       +  
Sbjct: 103 IDTCNKGMYDFQVEKGLKIKQSNLCSEVLLPTDSSRTAVCCLSSLNLEHYDE-----WKD 157

Query: 621 LASTIRTAVRVLDNVIDINCHT----IEKAKKSNHTHRAIG 657
               I+  + +LDN + I        IE+A  S    R+IG
Sbjct: 158 DPLFIKDVMEMLDNALTIFIENAPKRIERAVNSAKKERSIG 198


>gi|266625113|ref|ZP_06118048.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862990|gb|EFC95288.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 93

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F   KIS AI KAF A            +DI++ L+ +  +         
Sbjct: 4   VVKRDGEIVEFHLEKISEAIRKAFKATGKFY------TEDIVELLSIRVTSDFQGKM-QG 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127
             + +EDIQD VE  L +SG+  + + Y+LYR++R  
Sbjct: 57  DRIAVEDIQDSVEKVLEESGYTDVAKAYILYRKQREK 93


>gi|305682413|dbj|BAJ16294.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 92/235 (39%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   +R LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFEL-----WQSNEHFIPDIIRFLDNVLEDFINKAPDTMSN 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKVFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+     + R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIQER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +APTA+I+ I    S  I+P   N + +  ++G F++ N  L   LK + L ++ 
Sbjct: 147 VAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLKSKGLNNDQ 201


>gi|294675471|ref|YP_003576087.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
 gi|294473461|gb|ADE82850.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           ruminicola 23]
          Length = 746

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G +  F+  K+  AI KA +  +              + L  Q   R+ Q  +S 
Sbjct: 5   VKKRDGRIVGFNEQKVMAAIRKAMLHTDKGED----------ERLLYQITDRIAQRGESQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  MT--VEEIQDLVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTREV----FLDIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|260881448|ref|ZP_05893445.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
 gi|260848801|gb|EEX68808.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
          Length = 758

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    ++  KI  AI  A           +   +  +  +T Q    +       
Sbjct: 6   VTKRSGHTVPYNREKIYHAIAGA------NADGGNTMSEKDVDEVTSQVEWDIKDR---- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             V +E+IQD VE  LM+   + I ++Y+ YR++ ++ RAAQ H   
Sbjct: 56  DNVSVEEIQDIVEQELMKYDFYDIAKKYITYRQKHAERRAAQKHLME 102


>gi|52549915|gb|AAU83764.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos33H6]
          Length = 748

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA       GA       +I + LT + +    Q    
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKA-------GAVTGEFDSEIAQKLTLKVLNLAQQAIPR 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 57  D-IPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIREITSRANVD 104


>gi|224539203|ref|ZP_03679742.1| hypothetical protein BACCELL_04105 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519175|gb|EEF88280.1| hypothetical protein BACCELL_04105 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 735

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 117/356 (32%), Gaps = 64/356 (17%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  F+  KI  AI KA +  +            +I+ +T+          K +
Sbjct: 5   VIKRDGRVVGFNEEKIVTAIRKAMLHTDKG------EDLQLIRQITDHI------SFKGS 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           ++I  +
Sbjct: 53  AQMTVEAIQDAVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIIEIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQDVSSKIVLS----ETYKNMYDGLSESDLETALI 203
           D T  + N        M+++ A    +      +LS    E     Y  + + D      
Sbjct: 109 DVTRENANMNADTPAGMMMKFASETTKPFVDDYLLSDEVLEAVSGNYLHIHDKDYYPTKS 168

Query: 204 FSSRTL---------IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDRILTCGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             +  Y   Y+       +        +L  L       +D++  Y   + L D     +
Sbjct: 222 PAFDFYLAPYVRNSYIEEI-------KNLEELNG-----KDYSHLYQ--KELTDYLQQPL 267

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           +G   E       R+      K   +  +++E +    +         +  S   +
Sbjct: 268 DGLSDE------KRIVQHAINKTVARVHQSMEAFIHNMNTIHSRGGNQVVFSSINY 317


>gi|260655536|ref|ZP_05861024.1| anaerobic ribonucleoside-triphosphate reductase [Jonquetella
           anthropi E3_33 E1]
 gi|260629984|gb|EEX48178.1| anaerobic ribonucleoside-triphosphate reductase [Jonquetella
           anthropi E3_33 E1]
          Length = 693

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD  KI         AV    A+       I +N+T Q  + L       
Sbjct: 16  IFKRDGSQVLFDREKIRV-------AVMKAAAAVGSSDPSIGENVTRQVESYLAIFYDHD 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            I  +E IQD VE  L+++ + ++ + Y+LYR +R+ +R  +      A +  +
Sbjct: 69  SIPSVEQIQDLVERILIENDYAEVAKAYILYRRQRARIRDTKELLGGAADLVNR 122


>gi|282855510|ref|ZP_06264829.1| anaerobic ribonucleoside-triphosphate reductase [Pyramidobacter
           piscolens W5455]
 gi|282586653|gb|EFB91902.1| anaerobic ribonucleoside-triphosphate reductase [Pyramidobacter
           piscolens W5455]
          Length = 794

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           + KR+G +  F+  +I+RAI  A  AV E +G +   R+    + LT Q V RL +   S
Sbjct: 5   IKKRDGRLAPFNEDRITRAIFLAASAVAEKEGTAADYRI---AEGLTSQVVRRLNEKYAS 61

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                +ED+QD V   L+++GH + +  Y+ YR ER+ VR + +                
Sbjct: 62  G-SPSVEDVQDMVVKVLIENGHARTSEAYITYRNERTRVRDSHTRLMKAIEEITFADAKT 120

Query: 150 DDGTLISFNSK 160
            D    + N  
Sbjct: 121 ADVKRENANIN 131


>gi|269469073|gb|EEZ80628.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           SUP05 cluster bacterium]
          Length = 445

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 12/129 (9%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTR 82
           +    + VIKR+G    FD  KI  AI++A           S     +    LT Q +  
Sbjct: 5   QANSPLSVIKRDGTTVFFDSEKIHLAILRA--------GQVSEEFDDNEAGLLTAQVLKV 56

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           L     S     IE IQD VE  L+ S   K  R Y+ YRE+   +R  +      A   
Sbjct: 57  LGHR--SDHEPSIERIQDIVEQVLISSNFIKTARSYIAYREKHKVLREDKKTLIDVASSI 114

Query: 143 PKLKIMMDD 151
            +  +   D
Sbjct: 115 NE-YVDRAD 122


>gi|189465495|ref|ZP_03014280.1| hypothetical protein BACINT_01853 [Bacteroides intestinalis DSM
           17393]
 gi|189437769|gb|EDV06754.1| hypothetical protein BACINT_01853 [Bacteroides intestinalis DSM
           17393]
          Length = 735

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 120/356 (33%), Gaps = 64/356 (17%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  F+  KI  AI KA +  +            +I+ +T+          K +
Sbjct: 5   VIKRDGRVVGFNEEKIVTAIRKAMLHTDKG------EDLQLIRQITDHI------SFKGS 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           ++I  +
Sbjct: 53  AQMTVEAIQDAVEMELMKSSRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIIEIKSN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQD-VSSKIVLSETYKNMYDG---LSESDLETALI 203
           D T  + N        M+++ A    +  V   ++  E  + +++    + + D      
Sbjct: 109 DVTRENANMNADTPAGMMMKFASETTKPFVDDYLLSDEVLEAVHNNYLHIHDKDYYPTKS 168

Query: 204 FSSRTL---------IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC---- 250
            +                    ++   R        E  + +     +   +EM      
Sbjct: 169 LTCVQHPLDRILSCGFSAGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAI 221

Query: 251 -LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309
             +  Y   Y+       +        +L  L       +D++  Y   + L D     +
Sbjct: 222 PAFDFYLAPYVRNSYIEEI-------KNLEELNG-----KDYSHLYQ--KELTDYLQQPL 267

Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365
           +G   E       R+      K   +  +++E +    +         +  S   +
Sbjct: 268 DGLSDE------KRIVQHAINKTVARVHQSMEAFIHNMNTIHSRGGNQVVFSSINY 317


>gi|260892783|ref|YP_003238880.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
 gi|260864924|gb|ACX52030.1| anaerobic ribonucleoside-triphosphate reductase [Ammonifex degensii
           KC4]
          Length = 695

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 23/166 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK--NLTEQTVTRLLQHNK 88
           ++KR+G V  FD ++I+                 +    + +    +T   +  L +   
Sbjct: 7   IVKRDGRVVPFDAARITV-----------AVTKAAAATGEAVDTGEVTRCVLEELARS-- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145
              +  +E +QD VE  LM+ G+++  + Y+LYR++R  +R  ++    S  D  +    
Sbjct: 54  GVTVPTVEQVQDLVETCLMRLGYYRTAKAYILYRDQRRQIREMKALVSQSLIDQYLEEVD 113

Query: 146 KIMMDDGTLISFNSKRLEMIVEEAC---SGLQDVSSKIVLSETYKN 188
             + ++     ++ + L   +  A      L+ V  K V  E +KN
Sbjct: 114 WRIKEN-ANAGYSLQGLNNYLVGALAAEYWLEKVYPKEV-REAHKN 157


>gi|332886401|gb|EGK06645.1| anaerobic ribonucleoside-triphosphate reductase [Dysgonomonas
           mossii DSM 22836]
          Length = 735

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 12/120 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  E    S       +I+ +T+          +  
Sbjct: 5   VVKRDGRIVGFNEEKIMAAVRKAMLHTEQGEDSI------LIRRITDYV------SCQGN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S   ++ ++Y+ YR++RS  R A++       I  K   +  
Sbjct: 53  EQMTVEQIQDMVEMELMKSPRKEVAKKYIAYRDKRSIARKAKTRDMFLEIIETKSNDITR 112


>gi|207722416|ref|YP_002252852.1| ribonucleotide reductase protein [Ralstonia solanacearum MolK2]
 gi|206587595|emb|CAQ18177.1| ribonucleotide reductase protein [Ralstonia solanacearum MolK2]
          Length = 685

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  FD  KI RAI            +     ++    +  +   R+L H   
Sbjct: 5   QVMKRDGTLVDFDAGKIRRAI-----------GAAGHATREFETPMAAELTGRVLWHLAD 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++          +  +  
Sbjct: 54  MPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKTTLVDVESTMDE-YLEQ 112

Query: 150 DD 151
            D
Sbjct: 113 RD 114


>gi|83745549|ref|ZP_00942607.1| Anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           solanacearum UW551]
 gi|207738921|ref|YP_002257314.1| ribonucleotide reductase protein [Ralstonia solanacearum IPO1609]
 gi|83727626|gb|EAP74746.1| Anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           solanacearum UW551]
 gi|206592292|emb|CAQ59198.1| ribonucleotide reductase protein [Ralstonia solanacearum IPO1609]
          Length = 685

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV+KR+G +  FD  KI RAI            +     ++    +  +   R+L H   
Sbjct: 5   QVMKRDGTLVDFDAGKIRRAI-----------GAAGHATREFETPMAAELTGRVLWHLAD 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE IQ+QVE +L+ +G+ +  R Y++YRE+ + +R  ++          +  +  
Sbjct: 54  MPCPDIETIQNQVEETLVAAGYWRTARAYIVYREQHARLRTLKTTLVDVESTMDE-YLEQ 112

Query: 150 DD 151
            D
Sbjct: 113 RD 114


>gi|257440198|ref|ZP_05615953.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii A2-165]
 gi|257197232|gb|EEU95516.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii A2-165]
          Length = 723

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V  K +    ++  I  ++TEQ    L +   
Sbjct: 1   MKIIKRNGSEVPFDITKIITAVTKASDSVSRKSSLTQEQILSIANDVTEQ-CQALNR--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  LM    H + R Y+ YR  +S  R  
Sbjct: 57  ---AVSVEEIQDMVENKLMDIQAHDVARHYITYRYVQSLKRQT 96


>gi|224535702|ref|ZP_03676241.1| hypothetical protein BACCELL_00566 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522682|gb|EEF91787.1| hypothetical protein BACCELL_00566 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 697

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G   +F   KI  AI KAF++V                  T+  +T +L     +
Sbjct: 8   IVKRDGKKEAFSLDKIKNAISKAFLSVGSFA--------------TQDVITNILSRVNIS 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
               +EDIQ+QVE +LM   ++ + + ++LYR++  + R  +   
Sbjct: 54  DGTSVEDIQNQVEIALMAEHYYSVAKAFMLYRQKHLEDREVRDKL 98



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 21/181 (11%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK--NMYDGLSESDLETALIF 204
           I+  DG   +F+  +++  + +A   +   +++ V++      N+ DG S  D++     
Sbjct: 8   IVKRDGKKEAFSLDKIKNAISKAFLSVGSFATQDVITNILSRVNISDGTSVEDIQN---Q 64

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261
               L+ +   Y+   A  L  +     REV   +                       +E
Sbjct: 65  VEIALMAEHY-YSVAKAFMLYRQKHLEDREVRDKLRFLMDYCDASNPATGSKYDANANVE 123

Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321
               A L+   +   + + L   L  +R           L D Y   ++   IE+    F
Sbjct: 124 NKNIATLI-GELPKSNFIRLNRRLLTDR-----------LKDMYGKELSDRYIELLNQHF 171

Query: 322 M 322
           +
Sbjct: 172 I 172


>gi|46578715|ref|YP_009523.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120603720|ref|YP_968120.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|46448127|gb|AAS94782.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563949|gb|ABM29693.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|311232588|gb|ADP85442.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris RCH1]
          Length = 681

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I+ AI+KA  A   K    S R+   ++                
Sbjct: 4   QIRKRDGRLETWSTDRIAEAILKALKANGIKDPLLSKRLARKVEAKLHDVE--------- 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I   E +QD VE  LM+S  + + R Y++YRE+R ++R  ++           
Sbjct: 55  --IPEQEQVQDNVEQVLMESRLYAVARRYIVYREKRRELREHKAAFLDITETIET 107


>gi|7258400|emb|CAB77447.1| aerobic ribonucleotide reductase [Pectobacterium carotovorum]
          Length = 209

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 86/205 (41%), Gaps = 7/205 (3%)

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               D L  I               G+G +   +R LG+ I G      G IPF K    
Sbjct: 3   IECGDSLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQT 62

Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493
              + +QGG R GA   +   WH++VE  L L+ N G +  R   ++    +  L  +R+
Sbjct: 63  AVKSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRL 122

Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
            +    TLFSP +V  L+D +     EFE  Y  YE+     +    ++I AV L+  M+
Sbjct: 123 VKGEEITLFSPSDVPGLYDAFFANQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMM 178

Query: 551 TMLFETGHPWITFKDPCNIRSPQQH 575
                TG  +I   D CN  SP   
Sbjct: 179 QERASTGRIYIQNVDHCNTHSPFDP 203


>gi|256822439|ref|YP_003146402.1| anaerobic ribonucleoside triphosphate reductase [Kangiella
           koreensis DSM 16069]
 gi|256795978|gb|ACV26634.1| anaerobic ribonucleoside-triphosphate reductase [Kangiella
           koreensis DSM 16069]
          Length = 679

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+     F+ +KI  A+MKA       G +      D  + LT Q +  L     
Sbjct: 12  LKIVKRDLTEAKFERAKIYEAVMKA-------GKASGEFDADEAEKLTRQVIDVLSFRFT 64

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              +  +E +QD VE  L  + +    + Y+LYRE+   +R  +           +
Sbjct: 65  DLTVPTVEQVQDIVEHCLAVNQYFATAKAYILYREKHKIIRENKKTFLDITSSVEE 120


>gi|317472119|ref|ZP_07931451.1| nrdA protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900523|gb|EFV22505.1| nrdA protein [Anaerostipes sp. 3_2_56FAA]
          Length = 81

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           +    +  A  ID  W +++   RQ+ IDQAQS+NLY+ +E + +K+  +Y  AW  G+K
Sbjct: 2   ETFWYYKNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEQGVK 61

Query: 899 TTYYLRSRS 907
           T YY RS+S
Sbjct: 62  TIYYTRSKS 70


>gi|292669384|ref|ZP_06602810.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas noxia
           ATCC 43541]
 gi|292649019|gb|EFF66991.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas noxia
           ATCC 43541]
          Length = 774

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 97/284 (34%), Gaps = 34/284 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D +KI  AI           A+    V  +     ++    +    ++ 
Sbjct: 26  VTKRAGHAVPYDRAKILNAI----------AAASKEYVHPMTALEIDEVTAAVEASFENR 75

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP----IAPKLK 146
             + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H  +             
Sbjct: 76  AEISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRLAQKHLMASYRDIFFADAVDS 135

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETAL 202
            +  D   I+ ++  + ++++    G +      VL E      +  +  + + D     
Sbjct: 136 DLKRDNANINTDAS-MGIMLKLGAEGAKHFVDNYVLDERYATADRENFIHIHDKDFSLIT 194

Query: 203 IFSS-RTLIE-------------KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
                  L++             +EPN  +  A      ++         +   A  + M
Sbjct: 195 FNCCQIDLLKLFHGGFSTGHGFLREPNSIRAYASLACIAIQSNQNDMFGGQSINAFDYAM 254

Query: 249 QCLYPEYF-CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
                + F    +EE  KA L       F        L++E DF
Sbjct: 255 ADGVKKSFRKALVEEAWKALLYRLGRGQFTHEAFKKALRHELDF 298


>gi|212690794|ref|ZP_03298922.1| hypothetical protein BACDOR_00281 [Bacteroides dorei DSM 17855]
 gi|212666671|gb|EEB27243.1| hypothetical protein BACDOR_00281 [Bacteroides dorei DSM 17855]
          Length = 758

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A              +I  +T + ++  +     +
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNE------DKLIAEITMRVISNFV-----S 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTISVEEIQDLVEKELMKVRP-EVAKKYIIYREWRNTERDRKTQMK 101



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSS--KIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+ +       +      N     +S  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAIGKAFHASGIDNEDKLIAEITMRVISNFVSPTISVEEI 64

Query: 199 ETAL 202
           +  +
Sbjct: 65  QDLV 68


>gi|305682405|dbj|BAJ16290.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   ++ LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFEL-----WQSNEHFIPDIIKFLDNVLEDFINKAPNTMSN 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+     + R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIQER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           IAPTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ 
Sbjct: 147 IAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQ 201


>gi|313900949|ref|ZP_07834439.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
 gi|312954369|gb|EFR36047.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           HGF2]
          Length = 781

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 3/142 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F P KI+RAI  A  A        S    +  + LTE+ V  LL +    
Sbjct: 5   IKKRDGREIHFSPEKITRAIFLA--ASRVAQEEGSKADYETAEILTEKVVN-LLNNTYQG 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E++QD V   L+++GH + +  Y+LYR ER+ +R+ ++                 
Sbjct: 62  TTPTVENVQDAVIKVLIETGHARTSEAYILYRAERTRIRSMKTRLMKSIEEITFADSNDA 121

Query: 151 DGTLISFNSKRLEMIVEEACSG 172
           D    + N      +      G
Sbjct: 122 DIKRENANIDGNTAMGTMLQYG 143


>gi|237723711|ref|ZP_04554192.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           D4]
 gi|265756835|ref|ZP_06090823.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
 gi|229437922|gb|EEO47999.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides dorei
           5_1_36/D4]
 gi|263233621|gb|EEZ19241.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_33FAA]
          Length = 758

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A              +I  +T + ++  +     +
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNE------DKLIAEITMRVISNFV-----S 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTISVEEIQDLVEKELMKVRP-EVAKKYIIYREWRNTERDRKTQMK 101



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSS--KIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+ +       +      N     +S  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAIGKAFHASGIDNEDKLIAEITMRVISNFVSPTISVEEI 64

Query: 199 ETAL 202
           +  +
Sbjct: 65  QDLV 68


>gi|150004213|ref|YP_001298957.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932637|gb|ABR39335.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus ATCC 8482]
          Length = 758

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A              +I  +T + ++  +     +
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNE------DKLIAEITMRVISNFV-----S 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTISVEEIQDLVEKELMKVRP-EVAKKYIIYREWRNTERDRKTQMK 101



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSS--KIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+ +       +      N     +S  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAIGKAFHASGIDNEDKLIAEITMRVISNFVSPTISVEEI 64

Query: 199 ETAL 202
           +  +
Sbjct: 65  QDLV 68


>gi|239909107|ref|YP_002955849.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
 gi|239798974|dbj|BAH77963.1| anaerobic ribonucleoside-triphosphate reductase class III
           [Desulfovibrio magneticus RS-1]
          Length = 684

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA         +  I+   +   L  +   +L +    
Sbjct: 4   QIRKRDGCLETWSSQRIAQAILKAL-------KASGIQDPILAARLAGKVEGKLEEL--G 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++     A +     I  
Sbjct: 55  NDVPEQEHVQDAVELVLMESRLFAVARRYIVYREKRRELREQKAAFLDIADVIDT-YIAK 113

Query: 150 DD 151
            D
Sbjct: 114 TD 115


>gi|254884769|ref|ZP_05257479.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_3_47FAA]
 gi|294774982|ref|ZP_06740512.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|319644168|ref|ZP_07998693.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_40A]
 gi|254837562|gb|EET17871.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           4_3_47FAA]
 gi|294451191|gb|EFG19661.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           vulgatus PC510]
 gi|317384290|gb|EFV65261.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_40A]
          Length = 758

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A              +I  +T + ++  +     +
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNE------DKLIAEITMRVISNFV-----S 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTISVEEIQDLVEKELMKVRP-EVAKKYIIYREWRNTERDRKTQMK 101



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSS--KIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+ +       +      N     +S  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAIGKAFHASGIDNEDKLIAEITMRVISNFVSPTISVEEI 64

Query: 199 ETAL 202
           +  +
Sbjct: 65  QDLV 68


>gi|53714977|ref|YP_100969.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis YCH46]
 gi|60682944|ref|YP_213088.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides
           fragilis NCTC 9343]
 gi|253566075|ref|ZP_04843529.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_2_5]
 gi|265766824|ref|ZP_06094653.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|52217842|dbj|BAD50435.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           fragilis YCH46]
 gi|60494378|emb|CAH09174.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Bacteroides fragilis NCTC 9343]
 gi|251945179|gb|EES85617.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_2_5]
 gi|263253201|gb|EEZ24677.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_16]
 gi|301164410|emb|CBW23968.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Bacteroides fragilis 638R]
          Length = 797

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  A+ KAF A            Q +I ++T   + +      ++
Sbjct: 8   IIKRDGKREDFSISKIKNAVSKAFSATGINDE------QQLIADITMNVIGQF-----AS 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTITVEEIQDLVEKELMKVRP-EVAKKYIIYREWRNTERDKKTQMK 101


>gi|229828070|ref|ZP_04454139.1| hypothetical protein GCWU000342_00119 [Shuttleworthia satelles DSM
           14600]
 gi|229792664|gb|EEP28778.1| hypothetical protein GCWU000342_00119 [Shuttleworthia satelles DSM
           14600]
          Length = 764

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65
           D N  +E    SL     E    V V+KR+G    FD  KI +AI KA      +    S
Sbjct: 8   DENGEEEMYDESLDGNMDESNHMVYVMKRSGERVPFDLDKIIKAIQKA----NNEEGIVS 63

Query: 66  IRVQD-IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
            R+ +  I  +    +        +   + +E+IQD+VE +LM SG HK+ R Y+ YR +
Sbjct: 64  ERLTEGEIAGMAYGIMKDAEN---TGRDLSVEEIQDKVEDALMGSGKHKVARLYITYRYK 120

Query: 125 RSDVRAAQSHSKSDAPIAPKLK--IMMDDGTLIS 156
            +++R   +  +  A +  +    +  ++     
Sbjct: 121 HNEMRKMSAIDQKIAGVVERENEEVKQENSNKNP 154


>gi|237708180|ref|ZP_04538661.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           9_1_42FAA]
 gi|229457733|gb|EEO63454.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           9_1_42FAA]
          Length = 758

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF A              +I  +T + ++  +     +
Sbjct: 8   IIKRDGKREDFSISKIKNAIGKAFHASGIDNE------DKLIAEITMRVISNFV-----S 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YRE R+  R  ++  K
Sbjct: 57  PTISVEEIQDLVEKELMKVRP-EVAKKYIIYREWRNTERDRKTQMK 101



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVSS--KIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+ +       +      N     +S  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAIGKAFHASGIDNEDKLIAEITMRVISNFVSPTISVEEI 64

Query: 199 ETAL 202
           +  +
Sbjct: 65  QDLV 68


>gi|282881395|ref|ZP_06290073.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304744|gb|EFA96826.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 735

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G +  F+  KI  AI KA +  E              + L +Q    +  H K  
Sbjct: 5   IVKRDGRIVGFNDQKIMAAIRKAMLHTEKGED----------ERLIQQITDHISVHGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  --MSVEDIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKTR----DVFLDIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|282879302|ref|ZP_06288047.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           buccalis ATCC 35310]
 gi|281298584|gb|EFA91008.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           buccalis ATCC 35310]
          Length = 735

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G +  F+  KI  AI KA +  E              + L +Q    +  H K  
Sbjct: 5   IVKRDGRIVGFNDQKIMAAIRKAMLHTEKGED----------ERLIQQITDHISVHGKPQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  --MSVEDIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKTR----DVFLDIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|257784926|ref|YP_003180143.1| anaerobic ribonucleoside triphosphate reductase [Atopobium parvulum
           DSM 20469]
 gi|257473433|gb|ACV51552.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium parvulum
           DSM 20469]
          Length = 740

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +F+  KI  AI KA   V          +Q    N+T++          
Sbjct: 1   MKIIKRNGSEVTFEVEKIVNAIAKANAEVPEDQRLTEREIQFASLNVTDECEKA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E++QD VE  LM     ++ R+Y++YR  ++  R  
Sbjct: 55  -GHTVTVEEVQDLVEDQLMALDRFEVARKYIIYRYIQNQKRHK 96


>gi|288800589|ref|ZP_06406047.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332802|gb|EFC71282.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 736

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KIS AI KA +       S      ++I+ +T++            
Sbjct: 5   VVKRDGRIVGFNELKISGAIRKAMLHTNNGEDS------NLIQQITDRI------SMSGN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQ++VE  LM+S    + R Y+ YR  R+  R A++           + +  +
Sbjct: 53  SQMTVEEIQNKVENELMKSRRKDVARAYISYRNLRNVARKAKTR----DIFLEIINVKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|305682415|dbj|BAJ16295.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   +R LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFEL-----WQSNEHFIPDIIRFLDNVLEDFINKAPDTMSN 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKVFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+     + R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIQER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +APTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L ++ 
Sbjct: 147 VAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNDQ 201


>gi|237747114|ref|ZP_04577594.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
 gi|229378465|gb|EEO28556.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           HOxBLS]
          Length = 687

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 16/158 (10%)

Query: 1   MHPSKDVNKGDEDA--FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           M   + V    E +   PS+  P P+     ++IKR+G    FD  +I+ A+ KA  A  
Sbjct: 1   MKAEESVLIDREASQPAPSVLPPLPQ-----RIIKRDGAEVPFDARRITVALTKAGRATG 55

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118
             G             L  Q   ++L+H        +E +QD VE  L+ + H K  R Y
Sbjct: 56  DFGEDE--------AQLLTQRTLKVLRHRFVGAPPTVEQVQDVVEQMLVDANHTKTFRAY 107

Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLIS 156
             YR++R  +R  +      A    +  +   D  + +
Sbjct: 108 ATYRDQRHRLRQDRRTLVDVASSVEE-YVDRADWRVQA 144


>gi|74318189|ref|YP_315929.1| anaerobic ribonucleoside triphosphate reductase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057684|gb|AAZ98124.1| ribonucleotide reductase [Thiobacillus denitrificans ATCC 25259]
          Length = 676

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G    FD  KI  A+++A       G +      D    LT Q V  L    ++
Sbjct: 16  EVLKRDGRRAPFDAGKIRSALLRA-------GQASGEFGGDEADLLTAQVVKVLAHSFRN 68

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                IE IQD VE SL+ S H +  R Y+ YRE    +R  +           +
Sbjct: 69  T-PPDIERIQDVVEQSLIASNHFQTARAYIAYRESHKKLREDRKTVVDVEASINE 122


>gi|160914925|ref|ZP_02077139.1| hypothetical protein EUBDOL_00933 [Eubacterium dolichum DSM 3991]
 gi|158433465|gb|EDP11754.1| hypothetical protein EUBDOL_00933 [Eubacterium dolichum DSM 3991]
          Length = 781

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F P KI+RAI  A  A      S  +      + L EQ V  LL +    
Sbjct: 5   IKKRDGREIHFSPEKITRAIFLA--ASHVAQDSGEVADYATAERLCEQVVG-LLNNCYQD 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
            +  +E++QD V   L+++GH K +  Y+LYR ERS +R  ++  
Sbjct: 62  KVPSVEEVQDMVVKVLIENGHAKTSEAYILYRAERSKIRNMKTRL 106


>gi|305682411|dbj|BAJ16293.1| ribonucleoside-diphosphate reductase alpha chain [Orientia
           tsutsugamushi]
          Length = 201

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 50/235 (21%)

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647
             +++  TAVC L S+NL          +      I   +R LDNV++   +        
Sbjct: 12  DYTNNIRTAVCCLSSLNLEYFEL-----WQSNEHFIPDIIRFLDNVLEDFINKAPNTMSN 66

Query: 648 --KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
              S    R+IGLG+MGF S L   +IP AS  A     +  E I     + SV LA+ER
Sbjct: 67  AKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIKLQTDNMSVVLAKER 126

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
           GA               ID+     + R                           S   A
Sbjct: 127 GAC--------------IDAQKCNIQER--------------------------FSYKTA 146

Query: 766 IAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
           +APTA+I+ I    S  I+P   N + +  ++G F++ N  L   L+ + L +  
Sbjct: 147 VAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLLESKGLNNNQ 201


>gi|295102055|emb|CBK99600.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii L2-6]
          Length = 723

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA  +V GK      ++ DI   +T+Q    L +   
Sbjct: 1   MKIIKRNGAEVPFDITKIITAVTKASDSVGGKARLSREQITDIAAAVTDQ-CQALNR--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E++QD VE  LM    H I R Y+ YR  +S  R  
Sbjct: 57  ---AVSVEEVQDMVENQLMDIKAHDIARHYITYRYIQSLKRQT 96


>gi|283832328|ref|ZP_06352069.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071975|gb|EFE10084.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter
           youngae ATCC 29220]
          Length = 97

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG+    N  ++  +++ A  GL +VS   V   ++   YDG+  SD+   +I
Sbjct: 4   SLLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVL 233
            ++  LI +E P+Y  + AR  +  LR++ L
Sbjct: 64  KAAADLISREAPDYQYLAARLAIFHLRKKSL 94


>gi|294808479|ref|ZP_06767230.1| ATP cone domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444306|gb|EFG13022.1| ATP cone domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 307

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F  SKI  AI KAF       AS     Q ++ ++T   +++      + 
Sbjct: 8   IIKRDGKREDFSISKIKNAISKAF------SASGIQDEQQLVADITMNVISQF-----AT 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
             + +E+IQD VE SLM+    ++ ++Y++YRE R+  R  ++  K 
Sbjct: 57  PTITVEEIQDLVEKSLMKVRP-EVAKKYIIYREWRNTERDKKTQMKQ 102



 Score = 37.5 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA--CSGLQDVS--SKIVLSETYKNM-YDGLSESDL 198
           ++ I+  DG    F+  +++  + +A   SG+QD       +            ++  ++
Sbjct: 5   EICIIKRDGKREDFSISKIKNAISKAFSASGIQDEQQLVADITMNVISQFATPTITVEEI 64

Query: 199 ETALIFS 205
           +  +  S
Sbjct: 65  QDLVEKS 71


>gi|303233138|ref|ZP_07319811.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium vaginae
           PB189-T1-4]
 gi|302480723|gb|EFL43810.1| anaerobic ribonucleoside-triphosphate reductase [Atopobium vaginae
           PB189-T1-4]
          Length = 765

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKIS AI  A      K      R+           V  L +   
Sbjct: 26  MRIIKRNGSEVEFDISKISNAISAA-----NKEVPEGERLTQREITFASLNVEDLCKS-- 78

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
           +   V +E+IQD VE  +M   H  + R+Y++YR  ++  R   +   +   +       
Sbjct: 79  AGHTVTVEEIQDMVEDQIMALNHFSVARKYIIYRYLQAQKRHRNTTDDTILSLIESNNEE 138

Query: 147 IMMDDGTLIS 156
           +  ++     
Sbjct: 139 VKQENSNKNP 148


>gi|111184257|gb|ABH08177.1| HSPV074a [Horsepox virus]
          Length = 80

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 19/96 (19%)

Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917
            A+ R  +IDQ+QS+N+++ +PS  KL  ++   W +GLKT  YYLR++ A++  + TL 
Sbjct: 1   MAADRGAFIDQSQSMNIHIADPSYFKLTSMHFYGWSLGLKTEMYYLRTKPASAPIQFTLD 60

Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
               K                  P        C  C
Sbjct: 61  KDKIK------------------PPVVCDSEICTSC 78


>gi|320527019|ref|ZP_08028208.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
 gi|320132604|gb|EFW25145.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
          Length = 734

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G   +FD SKI  AI KA  A +    + +  ++DI + ++ +    L +   
Sbjct: 1   MNVIKRSGEELAFDVSKIENAITKANNATDLSHRTTAKVIRDITERVSSK-CKSLKRS-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  LM++   ++   Y+ YR ER+ VR A
Sbjct: 58  ----VSVEEIQDMVENELMKAQVFQVAHNYITYRYERALVRKA 96


>gi|237749265|ref|ZP_04579745.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
 gi|229380627|gb|EEO30718.1| ribonucleoside-triphosphate reductase [Oxalobacter formigenes
           OXCC13]
          Length = 687

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
            PS+  P P+     ++IKR+G    FD ++I+ A+ KA  A    G             
Sbjct: 17  TPSVLPPLPQ-----RIIKRDGADVPFDANRITVALTKAGRATGDFGEDE--------AQ 63

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           L  Q   ++L+H        +E +QD VE  L+ + H K  R Y  YR++R  +R  +  
Sbjct: 64  LLTQRTLKVLRHRFVGAPPTVEQVQDVVEQMLVDANHTKTFRAYATYRDQRHRLRQDRRT 123

Query: 135 SKSDAPIAPKLKIMMDDGTLIS 156
               A    +  +   D  + +
Sbjct: 124 LVDVASSVEE-YVDRADWRVQA 144


>gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 429

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 96/271 (35%), Gaps = 30/271 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++  ++IKR+   + F  +KIS AI KA M+V            +    ++   +  LL
Sbjct: 5   QLEITEIIKRDYETSPFVLNKISNAIEKAMMSVGNGTK-------EDANGISVNVLQTLL 57

Query: 85  QHNKSALI--VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA---QSHSKSDA 139
           +           +E++QD VE  LM S    + + Y+LYR+E++  R     +       
Sbjct: 58  ERKGKDHSYLPTVEEVQDLVEEKLMGSAFPNVAKAYILYRDEQARNRKTNIFEKRINLKP 117

Query: 140 PIAPKLKIMMD------------DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187
              P L   +D            + T    + K    +VE+       ++   +      
Sbjct: 118 YEYPALNDYVDAIRHSYWIHSEFNFTSDIQDFKTRLTVVEQNAIKNTMLAISQIEVAVKS 177

Query: 188 ---NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244
               +Y+ + + ++       + + +     Y+ +     +  L  E      K      
Sbjct: 178 FWGEIYNKMPKPEIGAVGATFAESEVRHHDAYSHL---LEILGLNNEFKHLKKKPVIMKR 234

Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275
            H ++           +E  ++ LL    ++
Sbjct: 235 VHYLETALKNAKSEDNKEYAESILLFSLFIE 265


>gi|145633334|ref|ZP_01789065.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
 gi|144986180|gb|EDJ92770.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           influenzae 3655]
          Length = 108

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DGT    N  ++  ++  A  GL +VS   V   ++   Y+G+  SD+   +I
Sbjct: 4   SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRRE 231
            ++  LI K+ P+Y  + AR  +  LR++
Sbjct: 64  KAAADLISKDSPDYQYLAARLAIFHLRKK 92


>gi|330996499|ref|ZP_08320381.1| anaerobic ribonucleoside-triphosphate reductase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329573055|gb|EGG54674.1| anaerobic ribonucleoside-triphosphate reductase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 737

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  E              + L       +    K+ 
Sbjct: 5   VVKRDGRIVGFNARKIGDAIRKAMVHTEAGEN----------EELIHLICEHVTNRGKAQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  MT--VEEIQDAVEMELMKSRRKDVAQKYIAYRNQRSIARKAKTR----DIFQEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|224025811|ref|ZP_03644177.1| hypothetical protein BACCOPRO_02553 [Bacteroides coprophilus DSM
           18228]
 gi|224019047|gb|EEF77045.1| hypothetical protein BACCOPRO_02553 [Bacteroides coprophilus DSM
           18228]
          Length = 795

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F  +KI+ AI KAF+A   +          +I  +T++ +    +     
Sbjct: 8   IIKRDGKRENFSAAKITNAIGKAFVATGLEHQEA------MINEITQRVIEHFAE----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K
Sbjct: 57  PTITVEAIQDLVETELMKV-QPEVAKKYIIYRQWRNTERDRKTQIK 101


>gi|76664965|emb|CAJ17922.1| ribonucleotide reductase alpha subunit [Candidatus Phytoplasma
           solani]
          Length = 222

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 6/212 (2%)

Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662
           S NL +    N  + + +  T+  A+ V+++V    N   +    K+N  +R++G G+MG
Sbjct: 8   SCNLSSGHMENMINNNTIKETVFMAMEVMNSVSTKTNIDYVPAVAKANRLNRSVGFGIMG 67

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721
             S L   +I +   E  ++ D     I+++++  S   A++    +  F+ S +  G +
Sbjct: 68  HHSFLVKNYIDFGGEENKDLLDVFFNAINYYSLLHSCNKARQTGQKFYRFQNSHYADGSY 127

Query: 722 PIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777
             +   +L + +        ++  S+  W +L+K VK  G+ NS+ +A+AP  +I  I G
Sbjct: 128 FRNRGEILPKTQKIKKIFSKISLPSQKDWQQLEKDVKQYGLFNSHRLAVAPNGSIGYIMG 187

Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809
            + S+ P  Q +  ++  +         L   
Sbjct: 188 TTPSLTPVKQLVEERTYGNSKTYCPMPGLKEA 219


>gi|213583962|ref|ZP_03365788.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 208

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 91/200 (45%), Gaps = 8/200 (4%)

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456
             G+G +   +R LG+ I G      G IPF K       + +QGG R GA   +   WH
Sbjct: 4   RAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWH 63

Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY-- 514
           ++VE  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L+D +  
Sbjct: 64  LEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFA 123

Query: 515 -GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573
              EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D CN  SP 
Sbjct: 124 DQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPF 179

Query: 574 QH-VGVVHSSNLCTEITLNS 592
              V  V  SNLC EI L +
Sbjct: 180 DPVVAPVRQSNLCLEIALPT 199


>gi|163816122|ref|ZP_02207490.1| hypothetical protein COPEUT_02306 [Coprococcus eutactus ATCC 27759]
 gi|158448542|gb|EDP25537.1| hypothetical protein COPEUT_02306 [Coprococcus eutactus ATCC 27759]
          Length = 731

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             E  K V VIKRNG   +FD SKI  AI+ A   V+        +V  I  NL +Q  +
Sbjct: 2   SEEAKKHVHVIKRNGEEVTFDLSKIENAILAANNEVDNLHQLNEYQVHAIADNLEKQIES 61

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
                   +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +       +
Sbjct: 62  M-------SHAVHVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELARKSNTTDNGILAL 114

Query: 142 APKLK--IMMDDGTLISF 157
              +   +  ++      
Sbjct: 115 IDHMNEEVNQENSNKNPV 132


>gi|298527845|ref|ZP_07015249.1| anaerobic ribonucleoside-triphosphate reductase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511497|gb|EFI35399.1| anaerobic ribonucleoside-triphosphate reductase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 682

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + S+   +I+ AI+KA         +  I+   +   L  +   +L +    
Sbjct: 4   QIKKRDGCMESWSTDRIAHAILKAL-------KASGIKDPLLASRLARKVEGKLHEDIPE 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                 E +QD VE  LM+S  +   ++Y++YRE+R ++R       +   I     +  
Sbjct: 57  Q-----ETVQDMVEMVLMESRLYDAAKKYIIYREKRRELRCQDQAYLNIGEIIDS-YVYK 110

Query: 150 DD 151
            D
Sbjct: 111 SD 112


>gi|189424838|ref|YP_001952015.1| anaerobic ribonucleoside triphosphate reductase [Geobacter lovleyi
           SZ]
 gi|189421097|gb|ACD95495.1| anaerobic ribonucleoside-triphosphate reductase [Geobacter lovleyi
           SZ]
          Length = 669

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+ S+I  AI +A     G   +     + ++  +T Q +  L       
Sbjct: 12  VLKRDGTRAPFEASRIQSAIQRA-----GTATAEFGDDEAML--ITSQVLKVLRHRFP-Q 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               IE IQD VE +L+ + H    R Y +YRE+RS +R  + 
Sbjct: 64  EPPTIEQIQDVVEQALISANHFATLRAYAVYREQRSRLRQDRK 106


>gi|332829841|gb|EGK02483.1| anaerobic ribonucleoside-triphosphate reductase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 735

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G +  F+  KI  AI KA +  E    S       +I+ +T+          +  
Sbjct: 5   VIKRDGRIVGFNEEKIMAAIRKAMLHTEQGEDSS------LIRRITDFI------SCQGN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S   +  ++Y+ YR++R+  R A++       I  K   +  
Sbjct: 53  EQMTVEQIQDMVEVELMKSPRKEAAKKYIAYRDQRNIARKAKTRDMFLEIIETKSNDITR 112


>gi|325299812|ref|YP_004259729.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           salanitronis DSM 18170]
 gi|324319365|gb|ADY37256.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           salanitronis DSM 18170]
          Length = 795

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   SF  SKIS AI KAF A   +      + + +I+ +T + +          
Sbjct: 8   IIKRDGKQESFSASKISNAIGKAFQATGLE------KQEQLIEEITRRVIAHFTH----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++  K
Sbjct: 57  PTLGVEEIQDLVENELMKV-QPEVAKKYIIYRQWRNTERERKTQMK 101


>gi|333029184|ref|ZP_08457245.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           coprosuis DSM 18011]
 gi|332739781|gb|EGJ70263.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides
           coprosuis DSM 18011]
          Length = 794

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 12/106 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F P KI  A+ KAF A    G S       I   +T + V ++       
Sbjct: 8   IIKRDGKKEVFSPLKIQNALSKAFTATGINGDS------QITSEITNRVVDKIQ-----L 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +E +QD VE  LM+  +  + ++Y++YR+ R+  R  ++  K
Sbjct: 57  DTISVEQVQDLVENELMKV-YPDVAKKYIIYRDWRTTEREKKTKMK 101



 Score = 41.4 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            A    I+  DG    F+  +++  + +A +         + SE    + D +    L+T
Sbjct: 2   AAGTKSIIKRDGKKEVFSPLKIQNALSKAFTATGINGDSQITSEITNRVVDKI---QLDT 58

Query: 201 ALIFSSRTLIEKE--PNYAKVTARFLLEK 227
             +   + L+E E    Y  V  ++++ +
Sbjct: 59  ISVEQVQDLVENELMKVYPDVAKKYIIYR 87


>gi|313895284|ref|ZP_07828841.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312976179|gb|EFR41637.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 754

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 91/284 (32%), Gaps = 34/284 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D +KI  AI  A                  I+N+T    T         
Sbjct: 6   VTKRAGHSVPYDRAKILNAIAAA------SKEYAHPMTALEIENVTAAVETAFESR---- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP----IAPKLK 146
             + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H  +             
Sbjct: 56  AEISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRMAQKHLMASYRDIFFADAVDS 115

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETAL 202
            +  D   I+ ++  + ++++    G +      VL E      +  +  + + D     
Sbjct: 116 DLKRDNANINTDAS-MGIMLKLGAEGAKHFVDNYVLEERYADADRENFIHIHDKDFSLIT 174

Query: 203 IFSS----RTLIE----------KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
                     L            +EPN  +  A      ++         +   A    M
Sbjct: 175 FNCCQIDLLKLFRGGFSTGHGFLREPNSIRAYASLACIAIQSNQNDMFGGQSINAFDFAM 234

Query: 249 QCLYPEYF-CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
                + F    +EE  KA L       F        L+ E DF
Sbjct: 235 ADGVKKSFRKAIVEEAWKALLYRLGHGHFTHDAFKKALRAELDF 278


>gi|320530799|ref|ZP_08031839.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           artemidis F0399]
 gi|320136958|gb|EFW28900.1| anaerobic ribonucleoside-triphosphate reductase [Selenomonas
           artemidis F0399]
          Length = 754

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 91/284 (32%), Gaps = 34/284 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G    +D +KI  AI  A                  I+N+T    T         
Sbjct: 6   VTKRAGHSVPYDRAKILNAIAAA------SKEYAHPMTALEIENVTAAVETAFESR---- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP----IAPKLK 146
             + +E+IQD VE  L+  G + I R Y+ YR+  +  R AQ H  +             
Sbjct: 56  AEISVEEIQDLVEKQLLAHGFYDIARRYITYRQRHAQRRMAQKHLMASYRDIFFADAVDS 115

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE----TYKNMYDGLSESDLETAL 202
            +  D   I+ ++  + ++++    G +      VL E      +  +  + + D     
Sbjct: 116 DLKRDNANINTDAS-MGIMLKLGAEGAKHFVDNYVLEERYADADRENFIHIHDKDFSLIT 174

Query: 203 IFSS----RTLIE----------KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248
                     L            +EPN  +  A      ++         +   A    M
Sbjct: 175 FNCCQIDLLKLFRGGFSTGHGFLREPNSIRAYASLACIAIQSNQNDMFGGQSINAFDFAM 234

Query: 249 QCLYPEYF-CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291
                + F    +EE  KA L       F        L+ E DF
Sbjct: 235 ADGVKKSFRKAIVEEAWKALLYRLGHGHFTHDAFKKALRAELDF 278


>gi|323345594|ref|ZP_08085817.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
 gi|323093708|gb|EFZ36286.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella oralis ATCC 33269]
          Length = 710

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F   KI  AI+KAF +V       S  +  ++ +L       +       
Sbjct: 8   ITKRDGSKDRFSLDKIMNAIIKAFNSVNEPINLGS--ISKLLSHLA--IHDDIK------ 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +EDIQ+QVE +LM+ G++ + + ++LYR+  ++ R      K
Sbjct: 58  ----VEDIQNQVEEALMREGYYNVAKSFMLYRQAHTEDRETLERLK 99


>gi|302345375|ref|YP_003813728.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150044|gb|ADK96306.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica ATCC 25845]
          Length = 719

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   + KR+G    F   KI  AI+KAF +V       ++           + +  L  
Sbjct: 3   MKNFTITKRDGSKDRFSLDKIMNAILKAFESVNEPTDLGTLS----------KIIANLNI 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            N     + +EDIQ+QVE +LM+ G++++ + +++YR++ ++ R      K
Sbjct: 53  QND----IKVEDIQNQVELALMKEGYYQVAKSFIVYRQQHTEDRETLEKMK 99



 Score = 38.3 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETAL 202
             I   DG+   F+  ++   + +A   + + +    LS+   N+   + +   D++   
Sbjct: 6   FTITKRDGSKDRFSLDKIMNAILKAFESVNEPTDLGTLSKIIANLNIQNDIKVEDIQNQ- 64

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLR----REVLTTVYKKPQKATHHEMQCLYPEYFCR 258
                 L   +  Y +V   F++ + +    RE L  +                      
Sbjct: 65  ----VELALMKEGYYQVAKSFIVYRQQHTEDRETLEKMKFLSDYCVASNAATGSKFDANA 120

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +E    A L+   +     + L   L  +R
Sbjct: 121 NVEHKNIATLI-GELPKQGFIRLNRRLLVDR 150


>gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 427

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ--HN 87
           ++IKR+     F   KI+ AI  A  A+               K ++ Q    LL     
Sbjct: 8   KIIKRDYSTAPFVLEKITNAIANAMAALGHGSEQD-------AKLISMQVYESLLNNKEQ 60

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +S  I  +E +QD VE  LM S  H + + Y++YR +R+  R  
Sbjct: 61  ESEYIPTVEQVQDMVEDKLMSSEFHDVAKAYIIYRNKRALERKT 104


>gi|198277606|ref|ZP_03210137.1| hypothetical protein BACPLE_03828 [Bacteroides plebeius DSM 17135]
 gi|198270104|gb|EDY94374.1| hypothetical protein BACPLE_03828 [Bacteroides plebeius DSM 17135]
          Length = 794

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 12/111 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  +++IKR+G   +F  +KI+ AI KAF A            ++ +  +T Q V+    
Sbjct: 3   LTEIRIIKRDGKQENFSAAKITNAIGKAFEATGIPQQ------KEELDLITRQVVSHF-- 54

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              S   + +E+IQD VE  LM+    ++ ++Y++YR+ R+  R  ++H K
Sbjct: 55  ---SQPTMGVEEIQDLVENELMKV-QPEVAKKYIIYRQWRNTERDRKTHIK 101


>gi|325269325|ref|ZP_08135942.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
 gi|324988246|gb|EGC20212.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella multiformis DSM 16608]
          Length = 718

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F   KI  AI+KAF +V       ++              +++L      
Sbjct: 8   ITKRDGSKERFSLDKIMNAILKAFESVNEPTDLGTM--------------SKILADLDIQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + +EDIQ+QVE +LM+ G +K+ + +++YR++ ++ R      K
Sbjct: 54  NDIKVEDIQNQVETALMKEGFYKVAKSFIVYRQQHTEDRETLEKMK 99


>gi|288574330|ref|ZP_06392687.1| anaerobic ribonucleoside-triphosphate reductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570071|gb|EFC91628.1| anaerobic ribonucleoside-triphosphate reductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 679

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 19/184 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F+  +I +       AV    A+  I  Q I + +T Q  + L       
Sbjct: 5   IRKRDGREVPFEKDRIRK-------AVMKAAAAVDIHDQKIGEAVTRQAESYLDIFFNHE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E +QD VE  L++ GH  I + Y+LYR++ S +R  +        +  +  +   
Sbjct: 58  GSPSVEQVQDLVEKILIEKGHADIAKAYILYRQQHSRLRDTRQLLGGAVEMVGQ-YLHKL 116

Query: 151 D-----GTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           D      + +S++ + L   +     A   L ++    +        +      DL    
Sbjct: 117 DWKVNENSNMSYSLQGLNNYIASEITAQYWLNEIYPPSIREHHVSGDF---HIHDLSNLS 173

Query: 203 IFSS 206
           ++  
Sbjct: 174 VYCC 177


>gi|328943623|ref|ZP_08241088.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
 gi|327491592|gb|EGF23366.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Atopobium vaginae DSM 15829]
          Length = 740

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    F+  KI  AI  A      K      R+ +         V  L ++  
Sbjct: 1   MKIIKRNGSEVEFNLHKIINAISAA-----NKEVPEDERLTEREITFASLNVEDLCKN-- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
           +   V +E+IQD VE  +M   H  + R+Y++YR  ++  R   +   +   +       
Sbjct: 54  AGHTVTVEEIQDMVEDQIMALNHFSVARKYIIYRYLQAQKRHRNTTDDTILSLIESNNEE 113

Query: 147 IMMDDGTLIS 156
           +  ++     
Sbjct: 114 VKQENSNKNP 123


>gi|291532368|emb|CBL05481.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Megamonas hypermegale ART12/1]
          Length = 670

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR G +  F+  KI+ AI KA        +      ++ +  +T   +  L       
Sbjct: 5   IKKRTGDIVKFNAQKITDAIKKA-----NMESIDETFSKEQLSTITNNVIKALKNL---- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E IQD VE  L+        + Y+LYR E + +R A++            K    
Sbjct: 56  KTPGVEQIQDAVEKVLIAGNFASTAKAYILYRAEHTKLRQAKADLMDIYDELTFTKAKDA 115

Query: 151 DGTLISFNSK 160
           D    + N  
Sbjct: 116 DIKRENANID 125


>gi|213021498|ref|ZP_03335945.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 194

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 82/197 (41%), Gaps = 7/197 (3%)

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           SC L    D L  I               G+G +   +R LG+ I G      G IPF K
Sbjct: 1   SCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYK 60

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
                  + +QGG R GA   +   WH++VE  L L+ N G +  R   M+    I  L 
Sbjct: 61  HFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLM 120

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546
             R+ +    TLFSP +V  L+D +     EFE  Y  YE      +    +++ AV L+
Sbjct: 121 YTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELF 176

Query: 547 RKMLTMLFETGHPWITF 563
             M+     TG  +I  
Sbjct: 177 SLMMQERASTGRIYIQN 193


>gi|261878746|ref|ZP_06005173.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
 gi|270334755|gb|EFA45541.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bergensis DSM 17361]
          Length = 737

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 24/199 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +          + +I  +T+          K  
Sbjct: 5   VVKRDGRIVGFNDQKIQAAIRKAMLHTDKG------EDEQLIVRITDHIA------MKGN 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMSVEEIQDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKTR----DVFMEIVNIRKN 108

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQD-VSSKIVLSETYKNMYDG---LSESDLETALI 203
           + T  + N        M+++ A    +  V   ++  +    +      + + D      
Sbjct: 109 EVTRENANMNADTPAGMMMKFASESTKPFVDDYLLSEDVRDAVKHNMIHIHDKDYYPTKS 168

Query: 204 FSSRTLIEKEP-NYAKVTA 221
            +          NY  V  
Sbjct: 169 LTCVQHPLDHILNYGFVAG 187


>gi|300694471|ref|YP_003750444.1| ribonucleotide reductase oxidoreductase protein (nrdd) [Ralstonia
           solanacearum PSI07]
 gi|299076508|emb|CBJ35833.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum PSI07]
          Length = 683

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV KR+G +  FD  KI +AI           A+     ++    +     TR++ 
Sbjct: 1   MACTQVTKRDGMMVDFDAEKIRQAI-----------AAAGHATREFDLPVAADLTTRVIG 49

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                    IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA ++          + 
Sbjct: 50  RLADMPCPGIETIQNAVEETLVAAGYWRTARAYIVYREQHARLRALEATLVDVESTMDE- 108

Query: 146 KIMMDD 151
            +   D
Sbjct: 109 YLEQRD 114


>gi|126654392|ref|ZP_01726138.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126589160|gb|EAZ83341.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 199

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + GV+  ++P +   Y +S   G F  V + +V E   R                   + 
Sbjct: 1   MVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVKEYLDR-------------------HP 41

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
           E    +L +   TA E+ P    +     QKWID + S  +   +  + ++++ +Y + +
Sbjct: 42  EASEQELPEWFVTAMELKPEAHADVQCIIQKWIDSSISKTVNAPKGYTVQQVEKVYERLY 101

Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935
             G K        S    +  TLK  +  ++ +   +     
Sbjct: 102 KGGAKGGTVYVDGSR-DSQVLTLKAEENDMDQLSFEEELVEE 142


>gi|300725847|ref|ZP_07059313.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bryantii B14]
 gi|299776894|gb|EFI73438.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           bryantii B14]
          Length = 739

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +                L ++    +    KS 
Sbjct: 5   VVKRDGRIVGFNDVKIKSAIRKAMLVTDKGEDDV----------LIQKITDHIATKGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  --MSVEAIQDAVEVELMKSARKDVAQKYIAYRNQRSIARKAKTR----DVFMEIVNIQKN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|256838798|ref|ZP_05544308.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           sp. D13]
 gi|256739717|gb|EEU53041.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           sp. D13]
          Length = 735

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|301308020|ref|ZP_07213974.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           20_3]
 gi|300833490|gb|EFK64106.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           20_3]
          Length = 735

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 425

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+     F   KI+ AI+KA  A+E  G   + R+ D++ +  ++      +   ++
Sbjct: 6   IVKRDFQTKPFHQEKITSAILKAMTAIEHGGPEDAQRISDMVYSDLKK-----RKELDAS 60

Query: 91  LIVHIEDIQDQVECSLMQSGHH-KITREYVLYREERSDVRAA 131
            I  IE IQD VE  LM S     + + Y+LYR+E++  R  
Sbjct: 61  YIPTIEQIQDLVERKLMLSEEFVDVAKTYILYRDEQAQKRKT 102


>gi|298374346|ref|ZP_06984304.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_19]
 gi|298268714|gb|EFI10369.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           3_1_19]
          Length = 735

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|150009988|ref|YP_001304731.1| anaerobic ribonucleoside triphosphate reductase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938412|gb|ABR45109.1| anaerobic ribonucleoside-triphosphate reductase [Parabacteroides
           distasonis ATCC 8503]
          Length = 735

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|262382704|ref|ZP_06075841.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_33B]
 gi|262295582|gb|EEY83513.1| anaerobic ribonucleoside-triphosphate reductase [Bacteroides sp.
           2_1_33B]
          Length = 735

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|317505369|ref|ZP_07963296.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
 gi|315663511|gb|EFV03251.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella salivae DSM 15606]
          Length = 756

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E                L ++    +  H KS 
Sbjct: 21  VVKRDGRIVGFNEQKIMAAIRKAMMHTEKGEDDA----------LVQKITDHISIHGKSQ 70

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + + Y+ YR +RS  R A++           + I  +
Sbjct: 71  MT--VEKIQDSVEMELMKSARKDVAQRYIAYRNQRSIARKAKTR----DVFMEIVNIKNN 124

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 125 DVTRENANMN 134


>gi|328947069|ref|YP_004364406.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           succinifaciens DSM 2489]
 gi|328447393|gb|AEB13109.1| anaerobic ribonucleoside-triphosphate reductase [Treponema
           succinifaciens DSM 2489]
          Length = 725

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 11/131 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHN 87
           +++IKR+G    +D +KIS AI KA           S R+++  I+++ +      ++ +
Sbjct: 1   MKIIKRSGAEAIYDRNKISTAIRKA-----NVQVRESHRLKESQIESIVDDIE---IECH 52

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK- 146
            S   +++EDIQD VE  +MQ+G +++ + Y+ YR     +R   +  +    +  +   
Sbjct: 53  NSGHALNVEDIQDLVENGIMQNGAYEVAKLYITYRYRHQLLRKENTTDQQIMSLLEENNE 112

Query: 147 -IMMDDGTLIS 156
            +  ++     
Sbjct: 113 EVKQENSNKNP 123


>gi|255012747|ref|ZP_05284873.1| anaerobic ribonucleoside triphosphate reductase [Bacteroides sp.
           2_1_7]
          Length = 735

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +            +I+ +T+          K  
Sbjct: 5   VVKRDGRIVGFNEEKIVTAIRKAMLHTDKG------EDMQLIRQITDHI------SFKGE 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E IQD VE  LM S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 53  PQMTVEAIQDAVELELMASSRKDVAQKYIAYRNQRSVARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DITRENANMN 118


>gi|315652796|ref|ZP_07905770.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
 gi|315484998|gb|EFU75406.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium saburreum DSM 3986]
          Length = 722

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKI  AI KA  AV G+           +  +         Q   
Sbjct: 1   MRIIKRSGAEVDFDISKIIAAIYKA-NAVVGEDDKLKKS---QVDRIANTVEN---QCWS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + +E+IQD VE  +M+   +++ R Y+ YR  ++  R 
Sbjct: 54  MNRAMSVEEIQDMVEDGIMRENAYEVARRYITYRYVQNIKRK 95


>gi|316934448|ref|YP_004109430.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris DX-1]
 gi|315602162|gb|ADU44697.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris DX-1]
          Length = 673

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +FD +KI  AI +A       G +     +     LT Q+V  +     + 
Sbjct: 13  IIKRSGAEAAFDSTKIRSAIARA-------GQATGAFGELEAGLLTSQSVKVIAHRF-AG 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +  IE +QD VE  L+ + H    R Y++YRE+RS  R+ +  +        +
Sbjct: 65  AVPQIEQVQDIVEQVLISANHLTTARAYIVYREKRSQARSDRKVAVDAIASINE 118


>gi|304382155|ref|ZP_07364666.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella marshii DSM 16973]
 gi|304336753|gb|EFM02978.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella marshii DSM 16973]
          Length = 749

 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 24/199 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  +                L ++    +  H KS 
Sbjct: 16  VVKRDGRIVGFNEQKIMAAIRKAMMHTDKGEDDA----------LVQKITDHISIHGKSQ 65

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 66  MT--VEKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKTR----DVFMEIVNIKNN 119

Query: 151 DGTLISFNSKRLE---MIVEEACSGLQD-VSSKIVLSETYKNM---YDGLSESDLETALI 203
           D T  + N        M+++ A    +  V   ++  E  + +   Y  + + D      
Sbjct: 120 DVTRENANMNADTPAGMMMKFASETTKPFVDDYLLSEEVREAVTHNYIHIHDKDYYPTKS 179

Query: 204 FSSRTLIEKEP-NYAKVTA 221
            +           Y  V  
Sbjct: 180 LTCVQHPLDHILEYGFVAG 198


>gi|260885728|ref|ZP_05897138.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           tannerae ATCC 51259]
 gi|260852077|gb|EEX71946.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           tannerae ATCC 51259]
          Length = 727

 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 14/105 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F   KI  AI+KAF ++     ++   +Q +I++L      R        
Sbjct: 33  ITKRDGTTERFSLDKIKSAILKAFTSLHQPIDAQG--LQRVIEHL------RFCNGM--- 81

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
               +EDIQ+QVE +LM   H K+ + ++LYR++ ++ R      
Sbjct: 82  ---SVEDIQNQVEVALMAEKHFKVAKAFMLYRQQHTEDRDVAERL 123



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 15/191 (7%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
           A  +             I   DGT   F+  +++  + +A + L        L    +++
Sbjct: 16  AHNNKITRKPMCTENFIITKRDGTTERFSLDKIKSAILKAFTSLHQPIDAQGLQRVIEHL 75

Query: 190 --YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR----REVLTTVYKKPQKA 243
              +G+S  D++  +      + EK     KV   F+L + +    R+V   +       
Sbjct: 76  RFCNGMSVEDIQNQV--EVALMAEKHF---KVAKAFMLYRQQHTEDRDVAERLSFMFDYC 130

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
                           +E    A L+   +     + L   L  +R    + +  + L +
Sbjct: 131 DAANPATGSKYDANANVENKNIATLI-GELPKRSFIRLNRRLLTDR---IKQMYGKALAE 186

Query: 304 RYFLHINGSRI 314
           RY   ++   I
Sbjct: 187 RYLYLLDNHFI 197


>gi|317154199|ref|YP_004122247.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944450|gb|ADU63501.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 685

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + ++   +I++AI KA        A+  I+   + K L  +   +L      
Sbjct: 4   QIMKRDGRLETWSTDRIAQAIFKAL-------AASGIKDPLLAKRLARKVEKKL----DG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I   E +Q+ VE  LM+S  + I ++Y+LYRE+R  +R+ ++       +   
Sbjct: 53  MEIPEQEHVQNTVEQILMESRQYDIAKKYILYREKRRQLRSQKAAYLDIKDVIDT 107


>gi|331002724|ref|ZP_08326239.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330407137|gb|EGG86641.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 728

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   +++IKR+G    FD SKI  AI KA  AV G+           +  +         
Sbjct: 3   KDSDMRIIKRSGAEVDFDISKIIAAIYKA-NAVVGEDDKLKKS---QVDRIANTVEN--- 55

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           Q       + +E+IQD VE  +M+   +++ R+Y+ YR  +S  R 
Sbjct: 56  QCMSMNRAMSVEEIQDMVEDGIMRENAYEVARKYITYRYVQSIKRK 101


>gi|319935134|ref|ZP_08009574.1| ribonucleoside-triphosphate reductase [Coprobacillus sp. 29_1]
 gi|319809959|gb|EFW06342.1| ribonucleoside-triphosphate reductase [Coprobacillus sp. 29_1]
          Length = 726

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 9/130 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   SFD  KI+ AI KA      +         + I N+T     +  +   
Sbjct: 1   MKIIKRNGSEVSFDELKITAAIEKA----NAEAVETERLSDEDIDNITNNVKYQCEKMR- 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
               + +E+IQ+ VE  +M+     + R+Y+ YR +R+ VR A +  +    +       
Sbjct: 56  --RALSVEEIQNLVENEIMKLNAFAVARKYITYRYKRALVRKANTTDEQILSLIECDNEE 113

Query: 147 IMMDDGTLIS 156
           +  ++     
Sbjct: 114 VKQENSNKNP 123



 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 56/181 (30%), Gaps = 14/181 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS---ESDLETA 201
           +KI+  +G+ +SF+  ++   +E+A    + V ++ +  E   N+ + +    E      
Sbjct: 1   MKIIKRNGSEVSFDELKITAAIEKA--NAEAVETERLSDEDIDNITNNVKYQCEKMRRAL 58

Query: 202 LIFSSRTLIEKE--PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +   + L+E E     A   AR  +    +  L        +     ++C   E     
Sbjct: 59  SVEEIQNLVENEIMKLNAFAVARKYITYRYKRALVRKANTTDEQILSLIECDNEEVKQEN 118

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319
             +      +    M  ++          +        ++   +      +       Q 
Sbjct: 119 SNKNPTVNSVQRDYMAGEVSK-----DITKRLLLPEHIVKAHEEGIIHFHDSDYF--AQH 171

Query: 320 F 320
            
Sbjct: 172 M 172


>gi|51243916|ref|YP_063800.1| anaerobic ribonucleoside triphosphate reductase [Desulfotalea
           psychrophila LSv54]
 gi|50874953|emb|CAG34793.1| related to anaerobic ribonucleoside-triphosphate reductase
           [Desulfotalea psychrophila LSv54]
          Length = 705

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR G +  F+ +KI+ A+ KA +A E          QD  + LT + +T   +     
Sbjct: 16  VKKRTGNIVPFESAKITAALEKAGLATEEFA-------QDEARRLTIRVLTLAYEVLPE- 67

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               +E +QD VE  L+ S H K  + Y+LYR+++   R     +   
Sbjct: 68  -TPEVEQLQDLVEEVLLASPHRKTAKSYILYRDQQKRRRQMIEQADIQ 114


>gi|269217079|ref|ZP_06160933.1| anaerobic ribonucleoside-triphosphate reductase [Slackia exigua
           ATCC 700122]
 gi|269129216|gb|EEZ60301.1| anaerobic ribonucleoside-triphosphate reductase [Slackia exigua
           ATCC 700122]
          Length = 740

 Score = 99.2 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  AI  A   V         ++    +N+ +           
Sbjct: 1   MKIIKRNGSEVEFDISKIENAITAANAEVPAAQRLTDRQISYASQNVADACAEA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  +M+    ++ R+Y++YR  +   R  
Sbjct: 55  -GHAVSVEEIQDLVEDEIMKLDRFEVARKYIIYRYVQGLKRQK 96


>gi|210635440|ref|ZP_03298544.1| hypothetical protein COLSTE_02475 [Collinsella stercoris DSM 13279]
 gi|210158387|gb|EEA89358.1| hypothetical protein COLSTE_02475 [Collinsella stercoris DSM 13279]
          Length = 740

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A   V+        +V+   +N+ E+  T       
Sbjct: 1   MKIIKRSGSEVTFDLQKIINAINGANSEVKSGERLTDRQVRYAAENVAERCETA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  LM     ++ R Y++YR  +   R  
Sbjct: 55  -GHTVSVEEIQDMVEDELMALDRFEVARHYIIYRYVQGLKRQK 96


>gi|152987792|ref|YP_001348725.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           aeruginosa PA7]
 gi|150962950|gb|ABR84975.1| anaerobic ribonucleoside-triphosphate reductase [Pseudomonas
           aeruginosa PA7]
          Length = 675

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KRNG    FDP KI RAI  A       G +         + L E+ V            
Sbjct: 15  KRNGREVPFDPGKIERAIAAA-------GQATGELDSRQAQALAERVVE----RLPERAC 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLY 121
           + IE +QD VE  LM++GH+   R YV+Y
Sbjct: 64  LDIERVQDLVERVLMEAGHYPTARAYVVY 92


>gi|283852526|ref|ZP_06369794.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
 gi|283572134|gb|EFC20126.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           FW1012B]
          Length = 682

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA         +  I+   +   L  +   +L      
Sbjct: 4   QIRKRDGCLETWSTQRIAQAILKAL-------KASGIQDPLLATRLAHKVECKLE----D 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++     A +     I  
Sbjct: 53  EDVPEQERVQDAVELVLMESRLFGVARRYIVYREKRRELREQKAAFLDIADVIDT-YIAK 111

Query: 150 DD 151
            D
Sbjct: 112 TD 113


>gi|325281162|ref|YP_004253704.1| anaerobic ribonucleoside-triphosphate reductase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312971|gb|ADY33524.1| anaerobic ribonucleoside-triphosphate reductase [Odoribacter
           splanchnicus DSM 20712]
          Length = 735

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 41/278 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  F+  KI  A+ +A +  +                L  +   R+       
Sbjct: 5   VLKRDGRVVGFNEEKIVAAVRRAMLHTDKGEDM----------QLAHEIADRIACR--GQ 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQ+ VE  LM+S    + + Y+ YR +RS  R A++       I  K   +  
Sbjct: 53  EQMSVEDIQNCVEIELMKSRRKDVAQLYIAYRNQRSVARKAKTRDIFLEIIETKSNEVTR 112

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSET---YKNMYDGLSESDLETALIFS 205
                + N+     ++ +  S      V   +++ E     +  Y  + + D       +
Sbjct: 113 --ENANMNADTPAGMMMKFSSETTKPFVDDYLLVEEVKNAVRQGYLHIHDKDYYPTKSLT 170

Query: 206 SR----TLIEKEPNY-----AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC-----L 251
                   I K   Y     ++   R        E  + +     +   +EM        
Sbjct: 171 CVQHPLDKILKNGFYVGHGESRPAKRI-------ETASILGCISLETAQNEMHGGQAIPA 223

Query: 252 YPEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYE 288
           +  Y   Y+    ++   + E +   D  +L +    +
Sbjct: 224 FDFYLAPYVRNSFIEEVKVLEEITGEDYKHLYHFPIKD 261


>gi|52548363|gb|AAU82212.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos11H11]
          Length = 746

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  F+  KI+ AI KA       G        +I + L  + +    Q    
Sbjct: 4   KIEKRDGRVKKFEVEKITNAIAKA-------GVVTGEFDYEIAQKLCLKVLNLAQQAIPR 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             I  +E+IQD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 57  D-IPTVEEIQDVVEEILLSSPYRKTAKAYIIYREQHAGIREITSRANVD 104


>gi|255305054|ref|ZP_05349226.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile ATCC 43255]
          Length = 783

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHNKS 89
           V KR+G V  F+  +I+RAI   F+A         I     + + LT++ + + L H  S
Sbjct: 5   VKKRDGRVIPFNEDRITRAI---FLAATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                
Sbjct: 61  ESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAED 120

Query: 150 DDGTLISFNSKRLEMIVEEACSG 172
            D    + N      +      G
Sbjct: 121 ADIKRENANINGNTAMGTMLQYG 143


>gi|325854308|ref|ZP_08171507.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola CRIS 18C-A]
 gi|325484102|gb|EGC87036.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola CRIS 18C-A]
          Length = 718

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F   KI  AI+KAF +V       ++    II +L       +       
Sbjct: 8   ITKRDGSKERFSLDKIMNAILKAFESVNEPTDLGTMS--KIIADL--DIQNDIK------ 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +EDIQ+QVE +LM+ G +++ + +++YR++ ++ R      K
Sbjct: 58  ----VEDIQNQVETALMKEGFYQVAKSFIVYRQQHTEDRETLEKMK 99


>gi|255102947|ref|ZP_05331924.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-63q42]
          Length = 783

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHNKS 89
           V KR+G V  F+  +I+RAI   F+A         I     + + LT++ + + L H  S
Sbjct: 5   VKKRDGRVIPFNEDRITRAI---FLAATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                
Sbjct: 61  ESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAED 120

Query: 150 DDGTLISFNSKRLEMIVEEACSG 172
            D    + N      +      G
Sbjct: 121 ADIKRENANINGNTAMGTMLQYG 143


>gi|126697679|ref|YP_001086576.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile 630]
 gi|115249116|emb|CAJ66927.1| Anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile]
          Length = 783

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHNKS 89
           V KR+G V  F+  +I+RAI   F+A         I     + + LT++ + + L H  S
Sbjct: 5   VKKRDGRVIPFNEDRITRAI---FLAATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                
Sbjct: 61  ESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAED 120

Query: 150 DDGTLISFNSKRLEMIVEEACSG 172
            D    + N      +      G
Sbjct: 121 ADIKRENANINGNTAMGTMLQYG 143


>gi|327313621|ref|YP_004329058.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola F0289]
 gi|326946134|gb|AEA22019.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           denticola F0289]
          Length = 718

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 14/106 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F   KI  AI+KAF +V       ++    II +L       +       
Sbjct: 8   ITKRDGSKERFSLDKIMNAILKAFESVNEPTDLGTMS--KIIADL--DIQNDIK------ 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
               +EDIQ+QVE +LM+ G +++ + +++YR++ ++ R      K
Sbjct: 58  ----VEDIQNQVETALMKEGFYQVAKSFIVYRQQHTEDRETLEKMK 99


>gi|296449099|ref|ZP_06890888.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP08]
 gi|296879490|ref|ZP_06903483.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP07]
 gi|296262061|gb|EFH08867.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP08]
 gi|296429508|gb|EFH15362.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Clostridium difficile NAP07]
          Length = 783

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHNKS 89
           V KR+G V  F+  +I+RAI   F+A         I     + + LT++ + + L H  S
Sbjct: 5   VKKRDGRVIPFNEDRITRAI---FLAATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                
Sbjct: 61  ESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAED 120

Query: 150 DDGTLISFNSKRLEMIVEEACSG 172
            D    + N      +      G
Sbjct: 121 ADIKRENANINGNTAMGTMLQYG 143


>gi|281426110|ref|ZP_06257023.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           F0302]
 gi|281399686|gb|EFB30517.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           F0302]
          Length = 740

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E                L ++    +  H KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMMHTEKGEDDA----------LVQKITDHICIHGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  MT--VEKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKTR----DVFMEIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|254977366|ref|ZP_05273838.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-66c26]
 gi|255094694|ref|ZP_05324172.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile CIP 107932]
 gi|255316453|ref|ZP_05358036.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-76w55]
 gi|255519109|ref|ZP_05386785.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-97b34]
 gi|255652288|ref|ZP_05399190.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile QCD-37x79]
 gi|260681885|ref|YP_003213170.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile CD196]
 gi|260685483|ref|YP_003216616.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           difficile R20291]
 gi|260208048|emb|CBA60257.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           difficile CD196]
 gi|260211499|emb|CBE01646.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           difficile R20291]
          Length = 783

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQHNKS 89
           V KR+G V  F+  +I+RAI   F+A         I     + + LT++ + + L H  S
Sbjct: 5   VKKRDGRVIPFNEDRITRAI---FLAATNVAEREGIVPDYKLSEQLTQEVI-KFLNHKYS 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +  +EDIQD V   L+++GH K + EY++YR ERS +R +++                
Sbjct: 61  ESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNSKTRLMKAIEEITFEDAED 120

Query: 150 DDGTLISFNSKRLEMIVEEACSG 172
            D    + N      +      G
Sbjct: 121 ADIKRENANINGNTAMGTMLQYG 143


>gi|323700675|ref|ZP_08112587.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           ND132]
 gi|323460607|gb|EGB16472.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           desulfuricans ND132]
          Length = 685

 Score = 98.4 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + ++   +I++AI KA        ++  I+   + + L  +   +L      
Sbjct: 4   QIMKRDGRLETWSTDRIAQAIFKAL-------SASGIKDPLLARRLARKVEKKL----DG 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I   E +Q+ VE  LM+   + I ++Y+LYRE+R  +R+ ++       +   
Sbjct: 53  MDIPEQEHVQNMVEQVLMEGRQYDIAKKYILYREKRRQLRSQKAAYLDIKDVIDT 107


>gi|299141931|ref|ZP_07035066.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           C735]
 gi|298576782|gb|EFI48653.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella oris
           C735]
          Length = 740

 Score = 98.4 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA M  E                L ++    +  H KS 
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMMHTEKGEDDA----------LVQKITDHICIHGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  MT--VEKIQDSVEMELMKSARKDVAQKYIAYRNQRSIARKAKTR----DVFMEIVNIKNN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|229495535|ref|ZP_04389268.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317518|gb|EEN83418.1| anaerobic ribonucleoside-triphosphate reductase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 801

 Score = 98.0 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 11/125 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + + ++KR+G    F+  KI  AI KA+ A  G        V  I+  +        +  
Sbjct: 4   EELYILKRDGSRQLFEAEKIRSAIYKAYRA--GGVRPDPSSVDVIVARIES------VAR 55

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 + +EDIQD VE +LM +    I ++Y++YRE R+  R  ++       +   +K
Sbjct: 56  AHKEGALAVEDIQDMVEQALMAADPF-IAKKYIIYREWRTVERDKRTRL--KHTMDGIVK 112

Query: 147 IMMDD 151
           I  +D
Sbjct: 113 IEKND 117


>gi|291562920|emb|CBL41736.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SS3/4]
          Length = 729

 Score = 98.0 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   SFD  KI  A+ KA  A E    +         + LT+       + NK
Sbjct: 1   MKIIKRNGAEESFDTLKIVNAVQKACNATENAYLAP--------EQLTDIADYVEYKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  LM  G   I + YV YR +RS VR A
Sbjct: 53  LGRAVSVEEIQDMVENQLMAIGAFAIAKNYVRYRYDRSLVRKA 95


>gi|163857400|ref|YP_001631698.1| anaerobic ribonucleoside triphosphate reductase [Bordetella petrii
           DSM 12804]
 gi|163261128|emb|CAP43430.1| anaerobic ribonucleoside-triphosphate reductase [Bordetella petrii]
          Length = 668

 Score = 98.0 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G V +FD +KI  AI  A  A     A+         + L  + V RL  H   
Sbjct: 10  QILKRDGRVVAFDGAKIVHAIAAAGQATGEVDAAA-------AEILGARVVARLAGHL-- 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                IE IQ+ VE +L+++G     R Y++YRE  + +R+ Q           +
Sbjct: 61  --CPGIETIQNLVEEALVEAGCWHTARAYIVYRERHARLRSLQHTLVDVESSMEE 113


>gi|269795447|ref|YP_003314902.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Sanguibacter keddieii DSM 10542]
 gi|269097632|gb|ACZ22068.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 754

 Score = 98.0 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G V  +DP+++ RA+  AF  V    A     V+  +  LTEQ    + +     
Sbjct: 32  VLKRDGRVAEYDPARVERALTSAFADVHVGPAQL---VRPAVLGLTEQVGAEIARRFTD- 87

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREER--SDVRAAQSHSKSDAPIAPKLKIM 148
             V I +IQ+ VE  L++S H+++   Y+ YR  R  +  R    +      ++    ++
Sbjct: 88  -TVQIYEIQNVVEHVLLESRHYEVAEAYIAYRVRRDVARNRTTDVNHSIGELLSKASSVV 146

Query: 149 MDD 151
            ++
Sbjct: 147 NEN 149


>gi|309388303|gb|ADO76183.1| ATP-cone domain protein [Halanaerobium praevalens DSM 2228]
          Length = 235

 Score = 98.0 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + VIKR+    ++   KI++AI +A +       S     +D  + +     + L+  
Sbjct: 4   SDMTVIKRDEREVAYSRDKITKAIYRAMIE------SGEDATEDDAEQVALDVESDLILE 57

Query: 87  NKS-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
             +   I  +E+IQD VE  LM++ +    + Y+LYR +R   R  +   + + P+
Sbjct: 58  FYNEDQIPKVEEIQDLVEEKLMKAAYVTTAKAYILYRNKRQKTRLKRKKDRQENPL 113


>gi|303245838|ref|ZP_07332120.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
 gi|302492621|gb|EFL52489.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           fructosovorans JJ]
          Length = 682

 Score = 98.0 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++   +I++AI+KA  A   +    S R+   ++   E            
Sbjct: 4   QIRKRDGCLETWSTQRIAQAILKALKASGIQDPLLSTRLAHKVEAKLEGV---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             +   E +QD VE  LM+S    + R Y++YRE+R ++R  ++     + +     I  
Sbjct: 54  -DVPEQEAVQDAVEQVLMESRLFAVARRYIVYREKRRELREQKAAYLDISDVIDN-YISK 111

Query: 150 DD 151
            D
Sbjct: 112 TD 113


>gi|257063213|ref|YP_003142885.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790866|gb|ACV21536.1| anaerobic ribonucleoside-triphosphate reductase [Slackia
           heliotrinireducens DSM 20476]
          Length = 737

 Score = 98.0 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +FD SKI  AI  A        A  S + +   + +         Q   
Sbjct: 1   MKIIKRNGSEVTFDISKIINAIKAA-------NAEVSEKERLTERQVVYAAQNVADQCEA 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +   V +E+IQD VE  +M+    ++ R+Y++YR  +   R  
Sbjct: 54  AGHSVSVEEIQDMVEDEIMKLDRFEVARKYIIYRYVQGIKRQK 96


>gi|258623341|ref|ZP_05718346.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM573]
 gi|258584401|gb|EEW09145.1| Ribonucleoside-diphosphate reductase subunit alpha [Vibrio mimicus
           VM573]
          Length = 308

 Score = 98.0 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 120/304 (39%), Gaps = 21/304 (6%)

Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           S  DL+   + +   ++++E     +  K   R    +   +     +   +K  +   Q
Sbjct: 18  SRKDLDFHALNAMLNILDREGQIQFDADKRAVRQYFLQHVNQNTVFFHHLDEKLDYLLEQ 77

Query: 250 CLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308
             Y  + F  Y  E +           F         K+     F    L+         
Sbjct: 78  GYYDAQVFAPYSREFLHHIWQSAFTQKFRFPSFLGAYKF-----FTAYALKT-------R 125

Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367
                +E  +   +  A+ LA  +     + +     + S  F  +TPT  N+G +   +
Sbjct: 126 DGKRYLERFEDRVVMTALTLARGDEAFAMQLMR---EILSGRFQPATPTFINAGKKSRGE 182

Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427
           L SCFL  + D++  I  A+  +  L++  GG+    + +R  GA I     +S GVIP 
Sbjct: 183 LISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPV 242

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+  D+    NQ G R+GA   YL   H D+  FLD ++   D++ R   ++    +PD
Sbjct: 243 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPD 302

Query: 488 LFMK 491
           +  +
Sbjct: 303 ITFE 306


>gi|268323800|emb|CBH37388.1| putative anaerobic ribonucleoside-triphosphate reductase
           [uncultured archaeon]
          Length = 748

 Score = 98.0 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            + KR+G +  F+  KI+ AI KA       GA       +I + LT + +    Q    
Sbjct: 4   NIEKRDGRLVFFETEKITTAIAKA-------GAVTGEFDYEIAQKLTLKVLNLAQQAIPR 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             +  +E++QD VE  L+ S + K  + Y++YRE+ + +R   S +  D
Sbjct: 57  D-VPTVEELQDVVEEILLSSPYRKTAKAYIIYREQHAGIRDITSRANVD 104


>gi|310658265|ref|YP_003935986.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           sticklandii DSM 519]
 gi|308825043|emb|CBH21081.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           sticklandii]
          Length = 782

 Score = 98.0 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V KR+G +  F+P KI+RAI  A  A E            I   LTE+   +LL    +
Sbjct: 4   KVKKRDGRLIPFNPEKITRAIFLA--ASEVANKEGITADYQIASELTEEV-RKLLNRKFA 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
             I  +EDIQD V   L+++GH K +  Y+LYR E
Sbjct: 61  GKIPSVEDIQDAVTKVLIETGHAKTSETYILYRAE 95


>gi|166032728|ref|ZP_02235557.1| hypothetical protein DORFOR_02443 [Dorea formicigenerans ATCC
           27755]
 gi|166027085|gb|EDR45842.1| hypothetical protein DORFOR_02443 [Dorea formicigenerans ATCC
           27755]
          Length = 729

 Score = 97.6 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   +VIKRNG    FD  KI  AI  A   V+        +V+ I  ++  Q       
Sbjct: 4   LVKTKVIKRNGEEVGFDLEKIENAIRAANEEVDNIYKLNEFQVRAIADDIAGQV------ 57

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             KS   +H+EDIQD VE  +M    +++ ++YV YR +R   R + +       +   +
Sbjct: 58  -KKSTHAIHVEDIQDMVETGIMGMRGYEVAQKYVRYRYKRELARKSNTTDNGILALIDNI 116

Query: 146 K--IMMDDGTLISF 157
              +  ++      
Sbjct: 117 NEEVNQENSNKNPV 130


>gi|256831157|ref|YP_003159885.1| anaerobic ribonucleoside-triphosphate reductase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580333|gb|ACU91469.1| anaerobic ribonucleoside-triphosphate reductase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 686

 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 13/116 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-QHNK 88
           Q++KR+G V S+   +I++AI+K+  A         I+   + K L  +  ++L  +   
Sbjct: 4   QIVKRDGRVESWSVDRIAQAILKSLNA-------SGIKDPILAKRLAGKVESKLEAEAMP 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                  E +QD VE  LM+S  +++ R Y++YRE+R  +R+              
Sbjct: 57  EQ-----ELVQDTVEQVLMESRLYQVARRYIVYREKRRAIRSQTETFLDVTETIDS 107


>gi|148658653|ref|YP_001278858.1| ribonucleoside-triphosphate reductase [Roseiflexus sp. RS-1]
 gi|148570763|gb|ABQ92908.1| Ribonucleoside-triphosphate reductase [Roseiflexus sp. RS-1]
          Length = 768

 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 10/119 (8%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
             +       +  S     P+ +    +IKR+G V  FD S+I  A+ + F +       
Sbjct: 3   QSNTEFNGTRSNGSTDTLHPDVVVPTMIIKRDGRVVPFDVSRIENAMARCFASFG----- 57

Query: 64  RSIRVQDI-IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
              R+ D  I  L ++ V  +           +E +QD VE  L  +G  +  + Y+LY
Sbjct: 58  ---RIPDTPIPELAQRVVNIVAARL-QGRPPTVEGVQDIVEMVLQAAGEFEAAKRYILY 112



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 81/551 (14%), Positives = 159/551 (28%), Gaps = 68/551 (12%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEE--ACSG-LQDVSSKIVLSETYKNMYDGLS 194
              + P + I+  DG ++ F+  R+E  +    A  G + D     +       +   L 
Sbjct: 22  PDVVVPTM-IIKRDGRVVPFDVSRIENAMARCFASFGRIPDTPIPELAQRVVNIVAARLQ 80

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254
                   +     ++ +     +   R++L +  R         P        +     
Sbjct: 81  GRPPTVEGVQDIVEMVLQAAGEFEAAKRYILYRAERARERERRPVPDHVRRAFDEA--RV 138

Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDL---KYERDFAFEYLGLQILYDRYFLHING 311
           YF   +++            +++L      +       D+ +E  G + L    +  I  
Sbjct: 139 YFPTALQQFQFFDKYSR--FNYELGRRETWIETVDRAVDYLYELAGDR-LPRETYERIRR 195

Query: 312 SRIEMPQAFFMRV-----------AMGLALKETEKEKRAVEFYNLLSSFH------FMCS 354
           + +EM     MR+           A+ +     +  +    F   L          F   
Sbjct: 196 NILEMRSMPSMRLLAMAGPAARRNAVAIYNCSYQPVESIDSFVEALIISMAGCGVGFSVE 255

Query: 355 TPTLFNSGTRHPQ-LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413
           +  + N      Q         V D   G   AL+         G +  D + +R  GA 
Sbjct: 256 SRYVENFPRIKRQTGKPPVTFVVEDSAEGWADALRYGLETWFEGGDVHFDLSHLRPAGAP 315

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           +    G++ G  PF  + +      N+   R+G+    ++    D+     +        
Sbjct: 316 LRTKGGRASGPEPFRAMLDFVR---NRIFARQGSFLRPIDAH--DIM--CAVGNAAVSGG 368

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            R   M +     D  M+                 D      + +     N      RG 
Sbjct: 369 VRRTAMISLFDYDDDEMRLAKAG------------DFERENSQRWN---ANNSAVWPRGG 413

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
           +     I     + +M+      G P I  ++  N+  P +       +N C EI L   
Sbjct: 414 LTQREFIR---HFMEMIESQ--RGEPGIFNREAANLMKPARRKEADFGTNPCGEIVLRPW 468

Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNH 651
                       NL A  A     ++ L   +  A  +                 K++  
Sbjct: 469 QF---------CNLSAAVARVDDTFETLRDKVEVATIIGTIQSLATHFPGLRPMWKQNCE 519

Query: 652 THRAIGLGLMG 662
             R +G+ + G
Sbjct: 520 EERLLGVDITG 530


>gi|153814148|ref|ZP_01966816.1| hypothetical protein RUMTOR_00357 [Ruminococcus torques ATCC 27756]
 gi|317499950|ref|ZP_07958186.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087827|ref|ZP_08336752.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848544|gb|EDK25462.1| hypothetical protein RUMTOR_00357 [Ruminococcus torques ATCC 27756]
 gi|316898667|gb|EFV20702.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330409522|gb|EGG88963.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 719

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD  KI  A+ KA  + EG+  + S      I+++ E       + NK
Sbjct: 1   MKIIKRNGAEEVFDIKKIVIAVTKADSSSEGRSLTDS-----QIEDIAEFVE---FKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  +M +G  ++ + YV YR +RS VR A
Sbjct: 53  LNRAVSVEEIQDLVEDQIMATGAFELAKRYVRYRYKRSLVRKA 95


>gi|295093550|emb|CBK82641.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus sp.
           ART55/1]
          Length = 708

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 23/165 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G   ++D SKI  AI KA   VE           + I+ +      +  +   
Sbjct: 1   MQVIKRDGRAVTYDRSKIILAIQKANSEVE----PCEKISDEKIEEIVGSIEAKNRKRML 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +EDIQD +E  LM  G   + + Y++YR  R  +R A +   S   +     I 
Sbjct: 57  ------VEDIQDIIEQGLMADGKFVLAKTYIIYRYSRELIRKANTTDDSILSL-----IQ 105

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
             +  ++  NS +    V      L       +  E  K++   +
Sbjct: 106 NRNKDVMEENSNK-NATVASTQRDL-------IAGEVSKDLTKRM 142


>gi|315607270|ref|ZP_07882270.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella buccae ATCC 33574]
 gi|315250973|gb|EFU30962.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Prevotella buccae ATCC 33574]
          Length = 741

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +              + L  +    +    KS 
Sbjct: 5   VVKRDGRIAGFNEQKIMGAIRKAMLHTDKGED----------EALIVKITDHIAFRGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  --MSVEDIQDAVEVELMKSARKDVAQKYIQYRNQRSIARKAKTR----DVFLDIVNIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|288925296|ref|ZP_06419231.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella buccae
           D17]
 gi|288338061|gb|EFC76412.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella buccae
           D17]
          Length = 741

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +              + L  +    +    KS 
Sbjct: 5   VVKRDGRIAGFNEQKIMGAIRKAMLHTDKGED----------EALIVKITDHIAFRGKSQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +EDIQD VE  LM+S    + ++Y+ YR +RS  R A++ +         + I  +
Sbjct: 55  --MSVEDIQDAVEVELMKSARKDVAQKYIQYRNQRSIARKAKTRNV----FLDIVNIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|239627658|ref|ZP_04670689.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517804|gb|EEQ57670.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 719

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA        A +S    + IK++ +       + +K
Sbjct: 1   MKIIKRNGAEEDFDINKIVVAVSKA-----NVAAGKSKLSMEQIKDIADYVE---YKCDK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  +M +G  ++ ++YV YR +RS +R A
Sbjct: 53  LNRAVSVEEIQDMVENQIMSTGAFELAKDYVRYRFQRSLIRKA 95


>gi|213609532|ref|ZP_03369358.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 208

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 18/205 (8%)

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           S GVIP +K+  D     NQ G R+GA   YL   H D+  FLD ++   D++ R   ++
Sbjct: 1   SSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLS 60

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK- 539
               IPD+  +   +NA   LFSP    D+   YGK F     +        +  V +  
Sbjct: 61  LGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTY 117

Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------- 590
           I+A   ++ +  + FE+G+ +I F+D  N  +P    G ++ SNLC+EI           
Sbjct: 118 INARDFFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDD 175

Query: 591 ---NSSSEETAVCNLGSINLLAHFA 612
               +       CNLGS+N+     
Sbjct: 176 NLDYTHIGHDISCNLGSLNIAHVMD 200


>gi|332881385|ref|ZP_08449035.1| anaerobic ribonucleoside-triphosphate reductase [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680761|gb|EGJ53708.1| anaerobic ribonucleoside-triphosphate reductase [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 737

 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  A+ KA +  E              + L       +    K  
Sbjct: 5   VVKRDGRIVGFNARKIGDAVRKAMVHTEAGEN----------EELIHLICEHVANRGKVQ 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E+IQD VE  LM+S    + ++Y+ YR +RS  R A++           + I  +
Sbjct: 55  MT--VEEIQDAVEVELMKSRRKDVAQKYIAYRNQRSIARKAKTR----DMFLEIINIKSN 108

Query: 151 DGTLISFNSK 160
           D T  + N  
Sbjct: 109 DVTRENANMN 118


>gi|282858815|ref|ZP_06267960.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bivia
           JCVIHMP010]
 gi|282588384|gb|EFB93544.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella bivia
           JCVIHMP010]
          Length = 702

 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 14/112 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            ++   + KR+G    F   KI  AI+K F +V                 LT  TV+++L
Sbjct: 2   AMQNFTITKRDGSKELFSLDKIMGAILKGFESVNEPTD------------LT--TVSKIL 47

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            + K    + +E+IQ+QVE SLM+ G + + + +++YR + S+ R  Q   K
Sbjct: 48  SNIKIHDDITVEEIQNQVEESLMKEGFYHVAKSFIVYRHQHSEDRETQEKIK 99



 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 52/151 (34%), Gaps = 12/151 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN--MYDGLSESDLETAL 202
             I   DG+   F+  ++   + +    + + +    +S+   N  ++D ++  +++  +
Sbjct: 6   FTITKRDGSKELFSLDKIMGAILKGFESVNEPTDLTTVSKILSNIKIHDDITVEEIQNQV 65

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLR----REVLTTVYKKPQKATHHEMQCLYPEYFCR 258
             S    + KE  Y  V   F++ + +    RE    +    +                 
Sbjct: 66  EES----LMKEGFY-HVAKSFIVYRHQHSEDRETQEKIKFLTEYCGASNAATGSKYDANA 120

Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYER 289
            +E    A L+   +     + +   L  +R
Sbjct: 121 NVENKNIATLI-GELPKQGFIRMNRRLLTDR 150


>gi|303236548|ref|ZP_07323131.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella disiens
           FB035-09AN]
 gi|302483254|gb|EFL46266.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella disiens
           FB035-09AN]
          Length = 699

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 14/109 (12%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +K   + KR+G    F   KI  AI+KAF +V                 +  + ++ +  
Sbjct: 1   MKNFTITKRDGSKDRFSLDKIMNAIIKAFDSVNEPTDLA----------MVSKVLSNIDI 50

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           H+     + +EDIQ+QVE +LM+ G + + + +++YR++ ++ R     
Sbjct: 51  HDD----IKVEDIQNQVEVALMKEGFYNVAKSFIVYRQQHTEDREVLEK 95



 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 58/178 (32%), Gaps = 15/178 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN--MYDGLSESDLETAL 202
             I   DG+   F+  ++   + +A   + + +   ++S+   N  ++D +   D++   
Sbjct: 4   FTITKRDGSKDRFSLDKIMNAIIKAFDSVNEPTDLAMVSKVLSNIDIHDDIKVEDIQNQ- 62

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
           +  +   + KE  Y    +  +  +     REVL  +                       
Sbjct: 63  VEVA---LMKEGFYNVAKSFIVYRQQHTEDREVLEKMRFLTDYCRAENAATGSKFDANAN 119

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYER-----DFAFEYLGLQILYDRYFLHINGS 312
           +E    A L+   +     + L   L  +R             +++L   +    + +
Sbjct: 120 VENKNIATLI-GELPKQGFIRLNRRLLTDRIKHMYGKELSEEYIRLLTHHFIYKNDET 176


>gi|222153867|ref|YP_002563044.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           uberis 0140J]
 gi|222114680|emb|CAR43757.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           uberis 0140J]
          Length = 731

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD +KI  A++KA + V       S  ++  ++ ++E+ V  ++  
Sbjct: 12  PDIKVIKRDGRLVSFDTTKIYSALLKASLEVTKM----SPLMEAKLEAISERVVAEIIDR 67

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 68  FPNN--VKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 120

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 121 LLKKDETVVNENANK 135



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
                   P +K++  DG L+SF++ ++   + +A   +  +S           + V++E
Sbjct: 4   ENEKIITQPDIKVIKRDGRLVSFDTTKIYSALLKASLEVTKMSPLMEAKLEAISERVVAE 63

Query: 185 TYKNMYDGLSESDLETAL 202
                 + +   +++  +
Sbjct: 64  IIDRFPNNVKIYEIQNIV 81


>gi|256826696|ref|YP_003150655.1| anaerobic ribonucleoside triphosphate reductase [Cryptobacterium
           curtum DSM 15641]
 gi|256582839|gb|ACU93973.1| anaerobic ribonucleoside-triphosphate reductase [Cryptobacterium
           curtum DSM 15641]
          Length = 740

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD +KI  AI KA   V  +      ++     N+T +          
Sbjct: 1   MKVIKRNGSEVIFDVTKIVNAIAKANEEVVPENRLSQAQILTAANNVTTECEA------- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 +E+IQD VE  +M  G  ++ R+Y++YR  ++  RA
Sbjct: 54  CGHAPAVEEIQDMVEDQIMALGCFEVARKYIIYRYLQNQKRA 95


>gi|218132283|ref|ZP_03461087.1| hypothetical protein BACPEC_00140 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992798|gb|EEC58799.1| hypothetical protein BACPEC_00140 [Bacteroides pectinophilus ATCC
           43243]
          Length = 718

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD  KI  AI KA          R    ++ I ++ +    +  +   
Sbjct: 1   MKIIKRNGSEEEFDIDKIIMAIRKA-----NDAGIRKELTEEQIDDIADYIEYKCEKM-- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               + +E+IQD VE  +M  G  +I + YV YR  RS VR 
Sbjct: 54  -NRTLSVEEIQDLVENQIMAKGAFEIAKGYVRYRYTRSLVRK 94


>gi|302336271|ref|YP_003801478.1| anaerobic ribonucleoside-triphosphate reductase [Olsenella uli DSM
           7084]
 gi|301320111|gb|ADK68598.1| anaerobic ribonucleoside-triphosphate reductase [Olsenella uli DSM
           7084]
          Length = 740

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD  KI  AI  A   V          V+    N+ +           
Sbjct: 1   MKIIKRNGSEVQFDLEKIVNAINAANAEVTADERLTEREVRFAALNVEDACKAA------ 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
               V +E+IQD VE  +M      + R+Y++YR  ++  R   +       +       
Sbjct: 55  -GHTVTVEEIQDLVEDQIMALDRFAVARKYIIYRYLQNQKRHKNTTDDKILSLIESNNEE 113

Query: 147 IMMDDGTLIS 156
           +  ++     
Sbjct: 114 VKQENSNKNP 123


>gi|192291023|ref|YP_001991628.1| anaerobic ribonucleoside triphosphate reductase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284772|gb|ACF01153.1| anaerobic ribonucleoside-triphosphate reductase [Rhodopseudomonas
           palustris TIE-1]
          Length = 673

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   +F  +KI  AI +A  A  G+       +      LT Q+V  +     + 
Sbjct: 13  IIKRSGAEAAFASAKIRSAIARAGQAT-GEFGELEAGL------LTSQSVKVIAHRF-AG 64

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +  IE IQD VE  L+ + H    R Y++YRE+RS  R  +  +        +
Sbjct: 65  AVPQIEQIQDIVEQVLISANHLTTARAYIVYREKRSQARNDRKVAVDAIASINE 118


>gi|323698640|ref|ZP_08110552.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio sp.
           ND132]
 gi|323458572|gb|EGB14437.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           desulfuricans ND132]
          Length = 699

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 41/191 (21%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G + ++   +I  AI KA            I+   +   L  +   +L      
Sbjct: 4   KILKRDGCIETWSTKRIGNAIFKAL-------KGSGIKDPLLADRLAGKVEKKLK----D 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I   E +QD V+  LM++   K+   Y++YRE+R ++R+        A +        
Sbjct: 53  VDIPEQEQVQDMVQEVLMEARLFKVAERYIIYREKRRELRSQDEAFLDIAQVT------- 105

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
            DG                    L +V  ++  +    + Y GL    L  A    +R +
Sbjct: 106 -DGY-------------------LNNVDWRVNENSNMTHSYQGLI---LHMAGAVQARYM 142

Query: 210 IEKEPNYAKVT 220
           +EK P   ++ 
Sbjct: 143 LEKYPEEVRLA 153


>gi|169343319|ref|ZP_02864329.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens C str. JGS1495]
 gi|169298617|gb|EDS80698.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens C str. JGS1495]
          Length = 710

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 8/110 (7%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E++K + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +        
Sbjct: 2   EELKMLHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI---- 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                    V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 56  --EMSGKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 103


>gi|229550958|ref|ZP_04439683.1| ribonucleoside-triphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538331|ref|YP_003172830.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus Lc 705]
 gi|229315673|gb|EEN81646.1| ribonucleoside-triphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257150007|emb|CAR88979.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           rhamnosus Lc 705]
          Length = 727

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  FD +KIS AI KA  +V    A  S R    I +LT+    ++      
Sbjct: 7   QIKKRDGRIVDFDATKISTAITKAAESV----AKLSPRDVLTIDHLTDTVTAKIRDRYHD 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V I +IQ  VE +L+ +  +     Y  YR +R   R  +     +       +++ 
Sbjct: 63  D--VEIAEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLARKQKQDVNYNVA-----RLVN 115

Query: 150 DDGTLISFNSKRLEMIVE 167
            D ++++ N+ +   +  
Sbjct: 116 RDKSVVNENANKDSRVFS 133



 Score = 41.8 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL----------SETYKNMYDGLSE 195
           +I   DG ++ F++ ++   + +A   +  +S + VL          ++     +D +  
Sbjct: 7   QIKKRDGRIVDFDATKISTAITKAAESVAKLSPRDVLTIDHLTDTVTAKIRDRYHDDVEI 66

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++++T +  +     + +   A    R   +  R++     Y   +     +
Sbjct: 67  AEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLARKQKQDVNYNVARLVNRDK 118


>gi|199599013|ref|ZP_03212421.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus HN001]
 gi|258507133|ref|YP_003169884.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus GG]
 gi|199590121|gb|EDY98219.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus HN001]
 gi|257147060|emb|CAR86033.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           rhamnosus GG]
 gi|259648503|dbj|BAI40665.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           rhamnosus GG]
          Length = 727

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  FD +KIS AI KA  +V    A  S R    I +LT+    ++      
Sbjct: 7   QIKKRDGRIVDFDATKISTAITKAAESV----AKLSPRDVLTIDHLTDTVTAKIRDRYHD 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V I +IQ  VE +L+ +  +     Y  YR +R   R  +     +       +++ 
Sbjct: 63  D--VEIAEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLARKQKQDVNYNVA-----RLVN 115

Query: 150 DDGTLISFNSKRLEMIVE 167
            D ++++ N+ +   +  
Sbjct: 116 RDKSVVNENANKDSRVFS 133



 Score = 41.8 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL----------SETYKNMYDGLSE 195
           +I   DG ++ F++ ++   + +A   +  +S + VL          ++     +D +  
Sbjct: 7   QIKKRDGRIVDFDATKISTAITKAAESVAKLSPRDVLTIDHLTDTVTAKIRDRYHDDVEI 66

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++++T +  +     + +   A    R   +  R++     Y   +     +
Sbjct: 67  AEIQTVVEQTLIAAEKYDWAEAYTQYRLKRDLARKQKQDVNYNVARLVNRDK 118


>gi|299069356|emb|CBJ40622.1| putative ribonucleotide reductase oxidoreductase protein (nrdD)
           [Ralstonia solanacearum CMR15]
          Length = 683

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           + G QV KR+G +  FD  KI +AI  A       G + +       + L+   + +L  
Sbjct: 1   MTGTQVTKRDGSLAPFDGQKIRQAIAAA-------GQATNEFDTQEAQRLSAHVIGQLA- 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                    IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA +           + 
Sbjct: 53  ---GLACPGIETIQNHVEEALVVAGYWRTARAYIVYREQHARLRALRHTLVDVESTMDE- 108

Query: 146 KIMMDD 151
            +   D
Sbjct: 109 YLEQRD 114


>gi|261368242|ref|ZP_05981125.1| anaerobic ribonucleoside-triphosphate reductase [Subdoligranulum
           variabile DSM 15176]
 gi|282569755|gb|EFB75290.1| anaerobic ribonucleoside-triphosphate reductase [Subdoligranulum
           variabile DSM 15176]
          Length = 740

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 11/103 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV--QDIIKNLTEQTVTRLLQH 86
           +++IKRNG    FD +KI  A+ KA           S R+    II+ L ++     L  
Sbjct: 1   MKIIKRNGSEAVFDITKIIAAVTKA-----NNVVPESQRLTNHQIIE-LADKVQASCLSR 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 +++E+IQD VE ++M +G +++ R+Y+ YR  +S  R
Sbjct: 55  ---GHAMNVEEIQDIVEDAIMATGAYEVARKYITYRYVQSLKR 94


>gi|330809992|ref|YP_004354454.1| ribonucleoside-triphosphate reductase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378100|gb|AEA69450.1| Ribonucleoside-triphosphate reductase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 671

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G V +FD  KI +A+            +      +  +   E  +  +L   +    
Sbjct: 15  KRDGSVVAFDADKIRQAL-----------IAAGKATGEYAEVEAEALLEAVLARLEGQTR 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +++E IQD+VE  LM +G     R Y++YRE+   +R  +      A    +
Sbjct: 64  LNVEQIQDRVERVLMDAGFFLSMRAYIVYREQHGRLRRDRRTLVEVATSMNE 115


>gi|17549184|ref|NP_522524.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           solanacearum GMI1000]
 gi|17431436|emb|CAD18114.1| putative ribonucleotide reductase oxidoreductase protein [Ralstonia
           solanacearum GMI1000]
          Length = 683

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A  A        + R+   +           +     
Sbjct: 5   QVTKRDGSLAPFDGQKIRQAIAAAGRATNEFDTQEAQRLSAHV-----------IGQLAG 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA +           +  +  
Sbjct: 54  LACPGIETIQNHVEEALVVAGYWRTARAYIVYREQHARLRALRHTLVDVESTMDE-YLEQ 112

Query: 150 DD 151
            D
Sbjct: 113 RD 114


>gi|291526100|emb|CBK91687.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale DSM 17629]
          Length = 735

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       +    D I+ +     T      +
Sbjct: 1   MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTA----DQIEEIASNVETACENMKR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 57  S---PSVEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNSTDQQILSLLE 108


>gi|291527165|emb|CBK92751.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale M104/1]
          Length = 735

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       +    D I+ +     T      +
Sbjct: 1   MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTA----DQIEEIASNVETACENMKR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 57  S---PSVEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNSTDQQILSLLE 108


>gi|229825027|ref|ZP_04451096.1| hypothetical protein GCWU000182_00377 [Abiotrophia defectiva ATCC
           49176]
 gi|229790774|gb|EEP26888.1| hypothetical protein GCWU000182_00377 [Abiotrophia defectiva ATCC
           49176]
          Length = 737

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  V++IKR+G  + FD +KI  A+ KA   V       S   ++ +  +TE        
Sbjct: 1   MIAVKIIKRSGQESIFDSNKIKLAVQKANDEVVADDLKLS---EEEVLKITENVTKVC-- 55

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
            +     + +E+IQD VE  LM++G   + R+Y+ YR +R+ VR + +       +    
Sbjct: 56  -SSMNRALSVEEIQDLVEDELMKTGKTHVARKYITYRYKRALVRQSNTTDDQILSLIECD 114

Query: 146 K--IMMDDGTLIS 156
              +  ++     
Sbjct: 115 NEEVKQENSNKNP 127


>gi|218133064|ref|ZP_03461868.1| hypothetical protein BACPEC_00926 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991937|gb|EEC57941.1| hypothetical protein BACPEC_00926 [Bacteroides pectinophilus ATCC
           43243]
          Length = 708

 Score = 95.7 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    +D +KI  AI +A   V+ K      ++++I+ ++  + V  L     
Sbjct: 1   MKVIKRNGRQVEYDRNKIIVAIQRANDEVDEKEKITEGQIENIVASIENRNVDALK---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                 +EDIQD +E  LM      + + Y++YR  R+ VR A
Sbjct: 57  ------VEDIQDIIEQKLMAERKFILAKTYIIYRYTRALVRKA 93


>gi|238924749|ref|YP_002938265.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale ATCC 33656]
 gi|238876424|gb|ACR76131.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           rectale ATCC 33656]
          Length = 746

 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI  AI KA  +V       +    D I+ +     T      +
Sbjct: 12  MKIIKRSGSEDIFDAAKIVAAIRKANDSVLDYEKLTA----DQIEEIASNVETACENMKR 67

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           S     +E+IQD VE  LM      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 68  S---PSVEEIQDMVENQLMNKRAFTVARNYITYRYKRAIVRKSNSTDQQILSLLE 119


>gi|218513067|ref|ZP_03509907.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli
           8C-3]
          Length = 229

 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHAT 847
           ++K  +      +     + L       + + +   +  G  ++     +  +   +   
Sbjct: 46  FLKETLKVSDEQLADMSFSLLDHMGFSKKDIEAANIHVCGAMTLEGAPFLKAEHLPVFDC 105

Query: 848 AF--------EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898
           A          +     I   +  Q +I  A S  + + +E + +     Y  +W +GLK
Sbjct: 106 ANPCGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYLLSWKLGLK 165

Query: 899 TTYYLRSRSA 908
                R  S 
Sbjct: 166 ANALYRDGSK 175


>gi|313905496|ref|ZP_07838860.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           cellulosolvens 6]
 gi|313469680|gb|EFR65018.1| anaerobic ribonucleoside-triphosphate reductase [Eubacterium
           cellulosolvens 6]
          Length = 747

 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            VIKRNG   +FD  KI  AIMKA   V       + ++Q I  N++ +          S
Sbjct: 11  NVIKRNGEEVAFDRKKIYNAIMKANKEVGRIHQMSNYQIQAITDNVSAKVHA-------S 63

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
              V++EDIQD VE  +M+   +++ ++YV YR +R+  R + +       +  +    +
Sbjct: 64  THAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRTLARKSNTTDDGILALIDQNNEEV 123

Query: 148 MMDDGTLISF 157
             ++      
Sbjct: 124 KQENSNKNPV 133


>gi|328955274|ref|YP_004372607.1| anaerobic ribonucleoside-triphosphate reductase [Coriobacterium
           glomerans PW2]
 gi|328455598|gb|AEB06792.1| anaerobic ribonucleoside-triphosphate reductase [Coriobacterium
           glomerans PW2]
          Length = 745

 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KIS AI  A      +        +  +   ++       +   
Sbjct: 6   MKIIKRSGVEVAFDVDKISSAIRGA----NKEVKEADRLTERQVIYASQNVAEACER--- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
           +   V +E+IQD VE  +M     ++ R Y++YR  +   R   +       +       
Sbjct: 59  AGHTVSVEEIQDLVEDEIMALDRFEVARRYIIYRYLQGLKRQKNTTDDKILSLIEHNNEE 118

Query: 147 IMMDDGTLIS 156
           +  ++     
Sbjct: 119 VKQENSNKNP 128


>gi|332652519|ref|ZP_08418264.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
 gi|332517665|gb|EGJ47268.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcaceae
           bacterium D16]
          Length = 712

 Score = 95.7 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G V  +D SKI  AI KA         +     + +  +  E  V+R+    +
Sbjct: 5   MKVVKRDGSVVDYDRSKIITAIQKA--------NAEVSEEEQLSLDRIEAIVSRIEDLGR 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               + +E+IQD VE  L+      + + Y++YR  R+ VR  
Sbjct: 57  DK--LPVEEIQDLVEQGLVNENKFYLAKTYIIYRYTRALVRKQ 97


>gi|156740149|ref|YP_001430278.1| ribonucleoside-triphosphate reductase [Roseiflexus castenholzii DSM
           13941]
 gi|156231477|gb|ABU56260.1| Ribonucleoside-triphosphate reductase [Roseiflexus castenholzii DSM
           13941]
          Length = 769

 Score = 95.3 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 4   SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
                +       S+    P+ I    +IKR+G V  FD ++I  A+ + F +      +
Sbjct: 3   QSHTARNGTHDTGSIDVRHPDVIVPTTIIKRDGRVVPFDVTRIENAMARCFASFGRTPDT 62

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                   I  L ++ V  ++          +E +QD VE  L  +G  +  + Y+LY
Sbjct: 63  P-------IPELAQRVVN-IVAAKSQGKPPTVEGVQDIVEMVLQAAGEFEAAKRYILY 112



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 78/547 (14%), Positives = 157/547 (28%), Gaps = 75/547 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL---QDVSSKIVLSETYKNMYDGLSESDLETAL 202
            I+  DG ++ F+  R+E  +    +      D     +       +             
Sbjct: 29  TIIKRDGRVVPFDVTRIENAMARCFASFGRTPDTPIPELAQRVVNIVAAKSQGKPPTVEG 88

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT--HHEMQCLYPEYFCRYI 260
           +     ++ +     +   R++L +  R         P        E +  +P    ++ 
Sbjct: 89  VQDIVEMVLQAAGEFEAAKRYILYRAERARERERRPIPDHVRRAFDEARVYFPTPLQQFQ 148

Query: 261 EEGVKARLLHESMMDFDLVYLANDL---KYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317
                +R       ++DL      +       D+  E  G + L    +  I  S +EM 
Sbjct: 149 FFDKYSR------FNYDLGRRETWIETVDRAVDYLHELAGDR-LPRETYERIRRSILEMR 201

Query: 318 QAFFMRV-----------AMGLALKETEKEKRAVEFYNLLSSFH------FMCSTPTLFN 360
               MR+           A+ +     +  +    F   L          F   +  + N
Sbjct: 202 AMPSMRLLAMAGPAARRNAVAIYNCSYQPVESIDSFVEALIISMAGCGVGFSVESRYVEN 261

Query: 361 SGTRHPQ---LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417
                 Q     + F+  V D   G   AL+         G +  D + +R  GA +   
Sbjct: 262 FPRIKRQTGKPPTTFV--VEDSAEGWADALRYGLETWFEGGDVHFDLSHLRPAGAPLRTK 319

Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477
            G++ G  PF  + +      N+   R+G+    ++    D+     +         R  
Sbjct: 320 GGRASGPEPFRAMLDFVR---NRIFARQGSFLRPIDAH--DIM--CAVGNAAVSGGVRRT 372

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
            M +     D  M+                 D      + +         +    +++  
Sbjct: 373 AMISLFDYDDDEMRLAKSG------------DFERENSQRWNANNSAVWPRGGLTQLEFI 420

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597
           R       + +M+      G P I  ++  N+  P +       +N C EI L       
Sbjct: 421 R------HFMEMVESQ--RGEPGIFNREASNLMKPARRKEAEFGTNPCGEIVLRPWQF-- 470

Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT--IEKAKKSNHTHRA 655
                   NL A  A     +D L   +  A  +                 +++    R 
Sbjct: 471 -------CNLSAAVARVDDTFDTLRDKVEVATIIGTIQSLATHFPGLRPMWRQNCEEERL 523

Query: 656 IGLGLMG 662
           +G+ + G
Sbjct: 524 LGVDITG 530


>gi|28210021|ref|NP_780965.1| anaerobic ribonucleoside triphosphate reductase [Clostridium tetani
           E88]
 gi|28202456|gb|AAO34902.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium tetani
           E88]
          Length = 704

 Score = 95.3 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SF+  KI+ AI +A  + E     +         NLT+  +  L +  K  
Sbjct: 4   VVKRDGRRASFNSIKIANAIKRA--SEEIGFELKESEFM----NLTQNVIKVLEKSVKDE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + +E+IQ+ VE +LM++ +  I R Y  YR+ER+ +R  +S       
Sbjct: 58  --ITVEEIQNLVERTLMENNYKNIGRAYANYRQERTRIREIKSDLMKAIE 105



 Score = 44.8 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETY----KNMYDGLSE 195
            L ++  DG   SFNS ++   ++ A       L++     +         K++ D ++ 
Sbjct: 1   MLYVVKRDGRRASFNSIKIANAIKRASEEIGFELKESEFMNLTQNVIKVLEKSVKDEITV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
            +++  +  +      K    A    R    ++R E+ + + K  +K 
Sbjct: 61  EEIQNLVERTLMENNYKNIGRAYANYRQERTRIR-EIKSDLMKAIEKI 107


>gi|168217624|ref|ZP_02643249.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens NCTC 8239]
 gi|182380348|gb|EDT77827.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens NCTC 8239]
          Length = 705

 Score = 95.3 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|182624325|ref|ZP_02952110.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens D str. JGS1721]
 gi|177910543|gb|EDT72916.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens D str. JGS1721]
          Length = 705

 Score = 94.9 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|168205767|ref|ZP_02631772.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens E str. JGS1987]
 gi|168209745|ref|ZP_02635370.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens B str. ATCC 3626]
 gi|170662686|gb|EDT15369.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens E str. JGS1987]
 gi|170712053|gb|EDT24235.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens B str. ATCC 3626]
          Length = 705

 Score = 94.9 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|18311489|ref|NP_563423.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens str. 13]
 gi|18146173|dbj|BAB82213.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens str. 13]
          Length = 705

 Score = 94.9 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|195953774|ref|YP_002122064.1| anaerobic ribonucleoside triphosphate reductase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195933386|gb|ACG58086.1| anaerobic ribonucleoside-triphosphate reductase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 710

 Score = 94.9 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 30  QVIKRNG-GVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +V+KR+      FD ++I +AI KAF AV    +         IK++ ++ ++ + +   
Sbjct: 19  RVLKRDNVTEVDFDVNRIEKAIEKAFDAV----SEFKGIDNAYIKDIAKEVISAICRRGL 74

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
           S  ++ IE IQD VE +++  G  K+ R Y++Y
Sbjct: 75  S--VITIEQIQDIVEETIIAHGFSKVARAYIVY 105


>gi|168213431|ref|ZP_02639056.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens CPE str. F4969]
 gi|170714994|gb|EDT27176.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens CPE str. F4969]
          Length = 705

 Score = 94.9 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|160937929|ref|ZP_02085287.1| hypothetical protein CLOBOL_02823 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439155|gb|EDP16909.1| hypothetical protein CLOBOL_02823 [Clostridium bolteae ATCC
           BAA-613]
          Length = 719

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD +KI  A+ KA        A ++    + IK++ +    + ++   
Sbjct: 1   MKIIKRNGAEEDFDNNKIVVAVAKA-----NTAAGKNKLSLEQIKDIADYVEYKCVKL-- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  +M +G  ++ ++YV YR +RS +R A
Sbjct: 54  -NRAVSVEEIQDMVENQIMSTGAFELAKDYVRYRYQRSLIRKA 95


>gi|110798770|ref|YP_697194.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens ATCC 13124]
 gi|110673417|gb|ABG82404.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens ATCC 13124]
          Length = 705

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|110802339|ref|YP_699763.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           perfringens SM101]
 gi|110682840|gb|ABG86210.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           perfringens SM101]
          Length = 705

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G  + F+  KI+ AI +A  A E   A R  +V D I+ +             
Sbjct: 2   LHVVKRDGRESRFNADKIANAIKRA--ANEVGIAIRESQVLDTIQKVINYI------EMS 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
               V +E+IQ  VE +LM +G +++   Y  YR ER+ VR  +S
Sbjct: 54  GKTDVTVEEIQVLVEKALMDNGFNQVATAYKAYRTERTKVREIKS 98


>gi|284794820|gb|ADB93746.1| gp53 [Mycobacterium phage RedRock]
          Length = 687

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 106/616 (17%), Positives = 188/616 (30%), Gaps = 147/616 (23%)

Query: 375 TVPDDLYGIFGALQENAMLAK----YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF--- 427
            V D   G   AL +                 D + VR +GA +    G++ G  PF   
Sbjct: 170 EVEDSREGWAAALTDLIDTHYRDEVSHFQRVYDVSRVRPVGAKLKTFGGQASGPQPFAEM 229

Query: 428 ---------------------LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466
                                + + +  A  V  GG R+ A  + +      +EEF++++
Sbjct: 230 LIKVCKILSANVDLPLTGIDAMTIDHAIASCVVAGGVRRSARMSMMHWNDPQIEEFINVK 289

Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
             +G+        N +  + D F   +                   L+ +E    Y   E
Sbjct: 290 ATSGE----HWTTNISVEVDDEFWAALK--------------GQSPLWWQEAIGDYTTQE 331

Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
                          A  +   +       G P +      N+  P      V  +N C 
Sbjct: 332 --------------KAERIMEALSVGAVRNGEPGMWDSSLSNVGEPN----KVVCTNPCG 373

Query: 587 EITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
           EITL         CNLG INL A   +  + DY  L    R   R L      +     K
Sbjct: 374 EITLEP----WEPCNLGHINLAAFVTDAGKTDYLDLIRAHRLMTRFL-IRATFSAVADPK 428

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           +++    +R IG+G +G  S L L    Y +                 A +   +L +E 
Sbjct: 429 SREVLDRNRRIGVGHLGVASYLALTGQHYNATA---------------ANTRFKKLLREL 473

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
                 + S +              E+R  + + +                         
Sbjct: 474 ATEVDGEASRFCH------------ELRIPVPVKK-----------------------RT 498

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKS---NMSGDFTVVNS------FLVNELKQRDLW 816
           IAPT T+A + GVS+ I P +   + +    N   DF  +         + ++L      
Sbjct: 499 IAPTGTVAKLAGVSEGIHPIFAKYFNRRIRFNKVSDFDQLMEMYNQGYHVEDDL----FA 554

Query: 817 DEAMISDLKYHDGSIGNIERI--PDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQSL 873
               +  +   D  +  +E +  P+  + +  +A E+    ++   +  Q  W D A S 
Sbjct: 555 PNTAVVTIPTKDTLLAAVEALWGPERAESLVQSAGELSLQEMLSVQATYQTCWADNAVSF 614

Query: 874 NLYL--DEPSGKKLDFIY-RQAWLMG-LKTTYYLRSRSATSVEKSTLKG-VDGKLNAVPV 928
              +     S   +  +  R A   G +K +         S E++  +     +  +   
Sbjct: 615 TANVDPTAYSPGDVAGVLERFA---GSIKGSTIF---PEASFEQAPYERITKQQYESAAA 668

Query: 929 TDPNSSTHSLGIPSSC 944
                         +C
Sbjct: 669 KAVEDGVDENCANGAC 684


>gi|197302141|ref|ZP_03167201.1| hypothetical protein RUMLAC_00868 [Ruminococcus lactaris ATCC
           29176]
 gi|197298828|gb|EDY33368.1| hypothetical protein RUMLAC_00868 [Ruminococcus lactaris ATCC
           29176]
          Length = 746

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 8/109 (7%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
            E+  G+++IKRNG    FD +KI +A+ KA    +     RS+     I+++ E     
Sbjct: 22  SEETGGMKIIKRNGSEEVFDINKIIKAVKKA----DINSEERSLSDGQ-IEDIAEYVE-- 74

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             + NK    V +E+IQD VE  +M +G  ++ + YV YR +RS VR A
Sbjct: 75  -FKCNKLNRAVSVEEIQDMVENQIMATGAFELAKSYVRYRYKRSLVRKA 122



 Score = 38.7 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 53/173 (30%), Gaps = 17/173 (9%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--------VSSKIVLSETYKNM 189
           ++     +KI+  +G+   F+  ++   V++A    ++              +      +
Sbjct: 21  ESEETGGMKIIKRNGSEEVFDINKIIKAVKKADINSEERSLSDGQIEDIAEYVEFKCNKL 80

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR-EVLTTVYKKPQKATHHEM 248
              +S  +++  +          E   + V  R+    +R+            +  + ++
Sbjct: 81  NRAVSVEEIQDMVENQIMATGAFELAKSYVRYRYKRSLVRKANTTDNRILSLIEYNNEDV 140

Query: 249 QCLYPEYFCR-------YIEEGVKARLLHESMMDFDLVYLAND-LKYERDFAF 293
           +                Y+   V   L    ++  D+V      + +  D  +
Sbjct: 141 KQENSNKNPAVNSVQRDYMAGEVSRDLTTRMLLPEDIVEADRQGIIHFHDSDY 193


>gi|309782389|ref|ZP_07677113.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia sp.
           5_7_47FAA]
 gi|308918726|gb|EFP64399.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia sp.
           5_7_47FAA]
          Length = 687

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A       G +         ++LT   V  L      
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAA-------GQATGEFDTIEAQHLTSGVVAHLAPLP-- 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+ +           +  +  
Sbjct: 60  --CPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEE-YLEQ 116

Query: 150 DD 151
            D
Sbjct: 117 RD 118


>gi|241663376|ref|YP_002981736.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12D]
 gi|240865403|gb|ACS63064.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12D]
          Length = 687

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A       G +         ++LT   V  L      
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAA-------GQATGEFDTIEAQHLTSGVVAHLAPLP-- 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+ +           +  +  
Sbjct: 60  --CPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEE-YLEQ 116

Query: 150 DD 151
            D
Sbjct: 117 RD 118


>gi|187929185|ref|YP_001899672.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|187726075|gb|ACD27240.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
          Length = 687

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FD  KI +AI  A       G +         ++LT   V  L      
Sbjct: 9   QVTKRDGSLAPFDAQKIRQAIAAA-------GQATGEFDTIEAQHLTSGVVAHLAPLP-- 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE IQ+ VE  L+ +G+ +  R Y++YRE+ + +R+ +           +  +  
Sbjct: 60  --CPGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEE-YLEQ 116

Query: 150 DD 151
            D
Sbjct: 117 RD 118


>gi|238917493|ref|YP_002931010.1| ribonucleoside-triphosphate reductase [Eubacterium eligens ATCC
           27750]
 gi|238872853|gb|ACR72563.1| ribonucleoside-triphosphate reductase [Eubacterium eligens ATCC
           27750]
          Length = 726

 Score = 94.9 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD SKI  A+ KA M V       S R+ +         V  + +   
Sbjct: 1   MKIIKRSGSEVTFDISKIMAAVSKANMEV-----VHSERLSEEQIETISNNVESICKEM- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               + +E+IQD VE  +M      + R+Y+ YR +R+ VR + S  +    +  
Sbjct: 55  -NRSLSVEEIQDLVENQIMNLRAFAVARKYITYRYKRALVRKSNSTDEQILSLLE 108



 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 51/141 (36%), Gaps = 7/141 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE--SDLE-TA 201
           +KI+   G+ ++F+  ++   V +A   ++ V S+ +  E  + + + +     ++  + 
Sbjct: 1   MKIIKRSGSEVTFDISKIMAAVSKA--NMEVVHSERLSEEQIETISNNVESICKEMNRSL 58

Query: 202 LIFSSRTLIEKEPNY--AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            +   + L+E +     A   AR  +    +  L        +     ++C   E     
Sbjct: 59  SVEEIQDLVENQIMNLRAFAVARKYITYRYKRALVRKSNSTDEQILSLLECNNEEVKQEN 118

Query: 260 IEEGVKARLLHESMMDFDLVY 280
             +      +    M  ++  
Sbjct: 119 SNKNPTVNSVQRDYMAGEVSK 139


>gi|167766281|ref|ZP_02438334.1| hypothetical protein CLOSS21_00785 [Clostridium sp. SS2/1]
 gi|317496972|ref|ZP_07955302.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167712000|gb|EDS22579.1| hypothetical protein CLOSS21_00785 [Clostridium sp. SS2/1]
 gi|291559087|emb|CBL37887.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SSC/2]
 gi|316895984|gb|EFV18136.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 729

 Score = 94.9 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKRNG   +FD +KI  AI KA   V         ++  I + + +Q          S
Sbjct: 8   KIIKRNGEEVTFDLNKIINAITKANEEVTKIHQMNQYQIMAIAEKVADQVAN-------S 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
           +  V++EDIQ+ VE  +M+   +++ ++YV YR +R   R + +       +   +   +
Sbjct: 61  SHAVNVEDIQNMVETGIMEMRGYEVAQKYVRYRFKRELRRKSNTTDDGILSLLDNINEEV 120

Query: 148 MMDDGTLISF 157
             ++      
Sbjct: 121 NQENSNKNPV 130


>gi|332523314|ref|ZP_08399566.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314578|gb|EGJ27563.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 731

 Score = 94.5 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD +KI  A++KA M V       S  V+  ++ ++E+ V  +   
Sbjct: 12  PDIKVIKRDGRLVPFDTTKIYSALLKASMEV----TPMSPLVEAKLEAISERVVAEIRDR 67

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 68  FPKN--VKIYEIQNIVEHELLSANEYAIAKEYINYRTQRDFARSQATDINFTID-----K 120

Query: 147 IMMDDGTLISFNSKR 161
           ++  D ++++ N+ +
Sbjct: 121 LLQKDQSVVNENANK 135



 Score = 43.3 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
           H K    + P +K++  DG L+ F++ ++   + +A   +  +S           + V++
Sbjct: 3   HEKETVVVQPDIKVIKRDGRLVPFDTTKIYSALLKASMEVTPMSPLVEAKLEAISERVVA 62

Query: 184 ETYKNMYDGLSESDLETAL 202
           E        +   +++  +
Sbjct: 63  EIRDRFPKNVKIYEIQNIV 81


>gi|225376983|ref|ZP_03754204.1| hypothetical protein ROSEINA2194_02625 [Roseburia inulinivorans DSM
           16841]
 gi|225211160|gb|EEG93514.1| hypothetical protein ROSEINA2194_02625 [Roseburia inulinivorans DSM
           16841]
          Length = 720

 Score = 94.5 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI KA  +V         ++Q+I+ N+ E+    + +   
Sbjct: 1   MKIIKRSGMEDNFDIKKIEAAIRKANESVIDYEKLTEEKIQEILANV-EKACENMKRS-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD VE  +M      + R Y+ YR +R+ VR + S  +    +  
Sbjct: 58  ----PSVEEIQDMVENQIMNQRAFNVARNYITYRYKRALVRKSNSTDEQILSLLE 108


>gi|109392503|ref|YP_655632.1| gp53 [Mycobacterium phage Che12]
 gi|91980653|gb|ABE67372.1| gp53 [Mycobacterium phage Che12]
          Length = 672

 Score = 94.5 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 109/689 (15%), Positives = 204/689 (29%), Gaps = 137/689 (19%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY----NLLSSFHFMCS 354
           Q L++ +         +  Q  FMR+ M             +E Y    + L        
Sbjct: 84  QHLFNCWVSGWPEKISDHFQFTFMRL-MEGGGVGANYSNHYLEGYPAVVHPLKVEIVCDP 142

Query: 355 TPTLFNSGTRHPQLSSCF------LTTVPDDLYGIFGALQENAMLAKY----SGGLGNDW 404
               + +      LS  +         + D   G   A+ +                 D 
Sbjct: 143 DHVDYQAMKDAGILSEHYDSDWVGAFPIEDSREGWAAAMVDLIDTHYRYDTVHFQRVYDV 202

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + +R  GA +    G + G +PF ++    +  ++            +   H        
Sbjct: 203 SRIRPQGAKLKTFGGVASGPLPFAQMLQKVSEVLSDRAGEVLTGLDAMAVDH-------- 254

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD--EVSDLHDLYGKEFEIAY 522
                            A  +    ++R  + +      P   E  +     G  +    
Sbjct: 255 ---------------AIAQCVVAGGVRRSARMSMMHWADPQITEFINCKSESGDHWTTNI 299

Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582
                     E+K   + +A  +   +       G P +      N+  P      V  +
Sbjct: 300 SVEVDDQFWREVKSPSESTAHDVMDALSKGAVRNGEPGMWDSSLSNVGEPN----RVVCT 355

Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCH 641
           N C EITL         CNLG INL A    + + DY  L    R   R L      +  
Sbjct: 356 NPCGEITLEP----WEPCNLGHINLAAFVTPSGKTDYIDLIRAHRLMTRFL-IRATFSPV 410

Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701
              K+++    +R IG+G +G  S L L    Y+     +     +  ++     A V+L
Sbjct: 411 ADPKSREVLDRNRRIGVGHLGVASYLALTGRRYSEAPGDKRFTNFLREMA-----AEVDL 465

Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761
           A E+ ++                      E+R  + + +                     
Sbjct: 466 AAEQFSH----------------------ELRIPVPVKK--------------------- 482

Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE--- 818
               IAPT T+A + GVS+ I P +   +++     + + +    + +L       E   
Sbjct: 483 --RTIAPTGTVAKMPGVSEGIHPIFSKYFIRRIRFNENSDMAE--LRKLANEGYEIEKDL 538

Query: 819 ----AMISDLKYHDGSIGNIERIP-DDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQS 872
                 +  +   D  +  +  +   D ++I   A ++    L+   +  Q  W D A S
Sbjct: 539 FAPNTEVVSIPTKDTLVQAVVDLHGRDAEEIVEAANDLTLHQLLAFQALYQTCWADNAVS 598

Query: 873 LNLYLDEPSGKKLD---FIYRQAWLMGL-KTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928
               +D  + + +D    + R A   GL K +                   +      P 
Sbjct: 599 FTANVDPDAYEAVDVAADLKRFA---GLIKGSTIF---------------PEASFPQAPY 640

Query: 929 TDPNSSTHSLGIPSSCTS--DTECE--VC 953
                  +   +  + +   D EC    C
Sbjct: 641 ERITKQQYESAVAKAVSDGVDEECANGAC 669


>gi|319941888|ref|ZP_08016209.1| anaerobic ribonucleoside-triphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804541|gb|EFW01411.1| anaerobic ribonucleoside-triphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 679

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G V  FD  KI +A++KA +A +   A+   R ++I++      + RL++H  
Sbjct: 7   LHLIKRDGAVRDFDAEKIVQAVVKAGLATQEFDAA---RAREIVQTY---VLPRLMKH-D 59

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +A    IE +QD VE  L ++G     R Y++YRE R+  R A+    +      +
Sbjct: 60  AARTPTIEWVQDAVEHGLYEAGCFPTLRAYIVYRESRAKARDAKKSWVNVESSINE 115


>gi|281422174|ref|ZP_06253173.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella copri
           DSM 18205]
 gi|281403679|gb|EFB34359.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella copri
           DSM 18205]
          Length = 739

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  F+  KI  AI KA +  +    +       +I+ +T+    R        
Sbjct: 5   VVKRDGRIVGFNEQKIMAAIRKAMLHTDKGEDTT------LIEQITDHISYRGKSQM--- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               +E IQD +E  LM+S    + ++Y+ YR +R+  R A++     + +  K   +  
Sbjct: 56  ---SVEAIQDAIELELMKSARKDVAQKYIAYRNQRNIARKAKTRDVFMSIVNAKNNDITR 112


>gi|262274139|ref|ZP_06051951.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Grimontia hollisae CIP 101886]
 gi|262221949|gb|EEY73262.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Grimontia hollisae CIP 101886]
          Length = 706

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+GG   F+  +I  A+M A  AVE    +           + +  + + ++     
Sbjct: 5   VIKRDGGRVPFERQRIKDAVMSAAFAVEDMDEA-------YAAAVADGVLAQFMR----D 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I  IQD VE  LM   +  + R Y+ YR +R  +R  +S   ++        +   
Sbjct: 54  EEVDIHQIQDAVENHLMAGPYKAVARAYIEYRHDRDSIREKKSRLSNEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  +++ N+ +   ++      L  + +K    +
Sbjct: 110 NSDILNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|294782022|ref|ZP_06747354.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Fusobacterium sp. 1_1_41FAA]
 gi|294481833|gb|EFG29602.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Fusobacterium sp. 1_1_41FAA]
          Length = 161

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 68/213 (31%)

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804
                 + V+  G+RN    AIAP  + + + G + S+ P++   +++ N  G       
Sbjct: 11  CQSWEVQLVEANGLRNGELTAIAPNTSTSLLMGSTASVTPTFSRFFIEKNQRGAIPRTVK 70

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                LK R  +     +                            ++P+  ++  ++  
Sbjct: 71  H----LKDRAWFYPEFKN----------------------------VNPISYVKIMAKIG 98

Query: 865 KWIDQAQSL----NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920
            W  Q  S+    +L   +   K +      AW  G K+ YY+R+     ++K+T    +
Sbjct: 99  SWTTQGVSMEMVFDLN-KDIKAKDIYDTLITAWEEGCKSVYYIRT-----IQKNTNNISE 152

Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953
                                       ECE C
Sbjct: 153 K--------------------------EECESC 159


>gi|182413606|ref|YP_001818672.1| ATP-cone domain-containing protein [Opitutus terrae PB90-1]
 gi|177840820|gb|ACB75072.1| ATP-cone domain protein [Opitutus terrae PB90-1]
          Length = 842

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 3   PSKDVNKGDEDAF---PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG 59
           PS++   GD         L          + VIKR+G    FD SK++RA+  AF  V  
Sbjct: 9   PSQNRLNGDHPVARKGAQLLNRAIPADARM-VIKRDGSKVRFDQSKVTRALALAFHEVRT 67

Query: 60  KGASRSIRVQ------------DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLM 107
             A    R              + +  ++      L  + +      IE +QD  E ++ 
Sbjct: 68  DNAPNPYRDHLLACFGLDTETFNEVSRISGAVAQMLELYYRDGKHPSIEQVQDAAEKAIA 127

Query: 108 QSGHHKITREYVLYREERSDVR 129
            +GH ++ R Y+LYR   ++ R
Sbjct: 128 AAGHWEVARAYMLYRARHAERR 149


>gi|229138138|ref|ZP_04266736.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
 gi|228645483|gb|EEL01717.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST26]
          Length = 246

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 7/246 (2%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLDLRK 467
           FLD +K
Sbjct: 241 FLDTKK 246


>gi|291550831|emb|CBL27093.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus
           torques L2-14]
          Length = 719

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG   +FD  KI  A+ KA      K           I+++ E       + NK
Sbjct: 1   MKIIKRNGSEETFDIQKIVVAVTKA-----DKDNGERTLTDSQIEDIAEYVE---FKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V +E+IQD VE  +M +G  ++ R+YV YR +RS VR A
Sbjct: 53  LNRAVSVEEIQDMVENQIMATGAFELARKYVRYRYKRSLVRKA 95


>gi|226324292|ref|ZP_03799810.1| hypothetical protein COPCOM_02072 [Coprococcus comes ATCC 27758]
 gi|225206740|gb|EEG89094.1| hypothetical protein COPCOM_02072 [Coprococcus comes ATCC 27758]
          Length = 729

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG    F   KI  AI KA   VE        ++  I + + +Q           
Sbjct: 8   RVIKRNGEEVDFRLEKIVNAIKKANEEVENIHRMNDFQIIAIAEKIAQQAEEF------- 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
              V++EDIQD VE  +M+   +++ ++YV YR +R   R + +       +   +   +
Sbjct: 61  THAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELTRKSNTTDNGILALIDHMNEEV 120

Query: 148 MMDDGTLISF 157
             ++      
Sbjct: 121 KQENSNKNPV 130


>gi|257876806|ref|ZP_05656459.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|257810972|gb|EEV39792.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC20]
          Length = 730

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P         ++ ++++KR+G +  FD  KI  A++KA   V G     S    + I  +
Sbjct: 7   PEQGLERQSALRQLKIVKRDGRLVDFDDQKIYDALVKALRKVNG---ELSPIDHEKITEI 63

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
            +     + +  ++   V I +IQ+ VE  L+    + +  EY+ YR  R   R+  +  
Sbjct: 64  VDSVDHEIAERFRTN--VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERSKATDI 121

Query: 136 K 136
            
Sbjct: 122 N 122


>gi|187926824|ref|YP_001893169.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|241665153|ref|YP_002983512.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia
           pickettii 12D]
 gi|187728578|gb|ACD29742.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12J]
 gi|240867180|gb|ACS64840.1| anaerobic ribonucleoside-triphosphate reductase [Ralstonia
           pickettii 12D]
          Length = 683

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +   QV KR+G + +FD  KI RA+  A       G +         + L+   V ++  
Sbjct: 1   MACTQVTKRDGSLAAFDGQKIHRAMAAA-------GQATGEFDTQEAQRLSLYVVDQV-- 51

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +     IE IQ+ VE +L+ +G+ +  R Y++YRE+ + +RA +           + 
Sbjct: 52  --SALDCPGIEAIQNHVEETLVDAGYWRTARAYIVYREQHARLRALRHTLVDVESTMDE- 108

Query: 146 KIMMDD 151
            +   D
Sbjct: 109 YLQQRD 114


>gi|152991850|ref|YP_001357571.1| anaerobic ribonucleoside triphosphate reductase [Sulfurovum sp.
           NBC37-1]
 gi|151423711|dbj|BAF71214.1| anaerobic ribonucleoside triphosphate reductase [Sulfurovum sp.
           NBC37-1]
          Length = 698

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F P KI  AI KAF                  K   +   T L++  K  
Sbjct: 5   IIKRDGASQKFVPFKIEDAIKKAF--------------DSEAKAYDKHVFTELMESIKDR 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQD +E  L +  H ++ R ++LYR      R        D       + + +
Sbjct: 51  DEISVEEIQDLIEKVLYEHRHFEVMRSFILYRHMHKIQREQILGLNEDTTYINSTQTIKE 110


>gi|9625480|ref|NP_039714.1| predicted 76.3Kd protein [Mycobacterium phage L5]
 gi|465265|sp|Q05262|VG50_BPML5 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|579135|emb|CAA79426.1| gene 50 [Mycobacterium phage L5]
          Length = 682

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 108/694 (15%), Positives = 206/694 (29%), Gaps = 146/694 (21%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCST 355
           Q L++ +         +  Q  FMR+  G  +             E  N L         
Sbjct: 84  QHLFNCWVAGWPEKISDHFQFTFMRLMEGGGVGANYSNHYLEGYPEVVNPLRVEIVCDPE 143

Query: 356 PTLFNSGTRHPQLSSCFLTT------VPDDLYGIFGALQENAMLAKYSGGLGN----DWT 405
              + +      LS  +         + D   G   AL +        G +      D +
Sbjct: 144 HVDYQAMKDVGILSEHYSHDWAGAYAIEDSREGWAAALVDLIDTHYRPGTVHYQRVYDVS 203

Query: 406 PVRGLGAHIHGTNGKSQGVIPF------------------------LKVANDTAVAVNQG 441
            +R  GA +    G + G +PF                        ++V +  A  V  G
Sbjct: 204 RIRPQGAKLKTFGGVASGPLPFAVMLQKVANIFSEYAGITLDGIAAMEVDHAIAQCVVAG 263

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501
           G R+ A  + +      +++F++++ +TG+        N +  + D F +   +  G   
Sbjct: 264 GVRRSARMSMMHWDDYQIDKFINIKASTGE----HWTTNISVEVDDEFWRLAKEGYGSFA 319

Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561
            + +++                              ++  A  + + +       G P +
Sbjct: 320 VAREDMP-----------------------------KQKRAHRVLKALSEGAVRNGEPGM 350

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDK 620
                 N+  P      V  +N C EITL         CNLG INL A      + DY  
Sbjct: 351 WDSSLSNVGEPN----RVVCTNPCGEITLEP----WEPCNLGHINLAAFVTPAGKTDYLD 402

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L    R   R L      +     K+++    +R IG+G +G  S L L    Y+     
Sbjct: 403 LIRAHRLMTRFL-IRATFSEVADPKSREVLDRNRRIGVGHLGVASYLALTGSRYSEAP-- 459

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
                              +  +E  A    +   +              ++R  + + +
Sbjct: 460 -------------GDKRFTQFLREMAAEVDSEAERFAH------------DLRIPVPVKK 494

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM----- 795
                                    IAPT T+A + GVS+ I P +   +++        
Sbjct: 495 -----------------------RTIAPTGTVAKMPGVSEGIHPIFSRYFIRRVRFNLNS 531

Query: 796 -SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854
              +   + +      K     +  ++  +   D  +  +E +  D  +I  +A E+   
Sbjct: 532 DMAELRRLAAEGYEIEKDLFAPNTEVV-SIPTKDTLVQAVEELGWDE-EIVESADELTLH 589

Query: 855 WLIESASRRQ-KWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGL-KTTYYLRSRSATS 910
            L+   +  Q  W D A S    +  D    + +    ++    GL K +      S   
Sbjct: 590 QLLAFQALYQMCWADNAVSFTANVHPDAYEAEDVAADLKR--FAGLIKGSTIFPESSFPQ 647

Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
                 +    +  +                 +C
Sbjct: 648 AP--YERITKQQYESAAAKAVEDGVDEECANGAC 679


>gi|222823093|ref|YP_002574666.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter lari
           RM2100]
 gi|222538314|gb|ACM63415.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter lari
           RM2100]
          Length = 759

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+    +FD  KI  AI KA        +       D +  L ++ V  L + +   
Sbjct: 6   IIKRDKSQVAFDIFKIKNAIFKA-----NINSIDEKLNNDFLDKLCDEVVALLDEKH--- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
             + +E IQD+VE  L+++      + Y+LYR++R+ +R
Sbjct: 58  --IQVEQIQDKVEEVLIKNALVNTAKSYILYRQKRTQIR 94


>gi|291529710|emb|CBK95296.1| Oxygen-sensitive ribonucleoside-triphosphate reductase [Eubacterium
           rectale M104/1]
          Length = 735

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD +KI+ A+ KA               +D I  L+E           
Sbjct: 1   MKIIKRSGMEVDFDVTKIAAAVRKA----NNSVVDYEKISEDEIIKLSETIENACSNM-- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +EDIQD VE  LM      + R Y+ YR  R  VR + +       +  
Sbjct: 55  -QHTPTVEDIQDMVENQLMSMKKFTLARNYITYRYRRELVRKSNTTDDQILSLIE 108


>gi|291458234|ref|ZP_06597624.1| anaerobic ribonucleoside-triphosphate reductase [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418767|gb|EFE92486.1| anaerobic ribonucleoside-triphosphate reductase [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 731

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
             E +    VIKRNG    FD  KI  AI KA   V         +++   + +  Q   
Sbjct: 2   AAELLIRTNVIKRNGQEVKFDIQKIVNAIQKANHEVALVYQMNEYQIRGAAEKVARQI-- 59

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141
                  S   V++EDIQD VE ++M+   +++ ++YV YR +R   R + +       +
Sbjct: 60  -----GSSKHAVNVEDIQDMVETAIMEMRGYEVAQKYVRYRYKRELARKSNTTDDEILSL 114

Query: 142 APKLK 146
             +  
Sbjct: 115 IDQAN 119


>gi|291457375|ref|ZP_06596765.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           breve DSM 20213]
 gi|291381210|gb|EFE88728.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           breve DSM 20213]
          Length = 802

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           E+   +       K   V V KR+G V  FDP  I  AI  AF                +
Sbjct: 7   EENVTNNGTKAAAKASTVLVEKRDGRVVDFDPINIISAIKSAF---GDLNKEVGPEEDAM 63

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           I+   +Q    + +    A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA 
Sbjct: 64  IRGFADQVEGEIKERY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAK 121

Query: 132 QSHSKSD 138
            +     
Sbjct: 122 ATDVNEA 128


>gi|194172966|ref|YP_002003610.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia phage
           rv5]
 gi|114796004|gb|ABI79178.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia phage
           rv5]
          Length = 707

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 111/350 (31%), Gaps = 64/350 (18%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G    ++  K+ +A   A +         S   ++    +       +  +  
Sbjct: 1   MKVVKRDGREEFYNGIKVIKAAESALLE--------SGHTEEEAYRIACAVNEVVANNLP 52

Query: 89  SAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           +    + +++I   VE +LM  G     REY+ YR+ R + R A     +D         
Sbjct: 53  TDQCTISVKNIHILVEDALMDMGLKCAAREYIQYRQTRDNNREAGGKLLAD--------- 103

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSESDLETALIFS 205
                         +   ++  C      ++    +   T++++  G+    L +  I  
Sbjct: 104 --------------ISGFLDRTCDEFTKENAIKPTIHVHTHRDLLAGILSKHLASTQILP 149

Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265
            R  + +E N      R  +     + L +         + +M          ++ +   
Sbjct: 150 DR--VSEEHN------RGFIHVHDLDYLISPLTNCCLVNYPDMLENGFNIGNAHVSKPKS 201

Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL--YDRYFLHINGSRIEMP----QA 319
             +    +        +              G Q +   D Y      +  E      Q 
Sbjct: 202 IGVATTILSQISSAVASAQY-----------GGQTMSHIDHYLAQYAEATYEKNLKFCQE 250

Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369
            ++  A  +A++         + ++ + +  +  +T T  N  T    LS
Sbjct: 251 HWLPDAETVAMQ-----MTDKDVFDSMQTLLYQINTLTSVNGQTPFITLS 295


>gi|251783466|ref|YP_002997771.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242392098|dbj|BAH82557.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 732

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V    A  S  ++  ++ ++E+ +  + + 
Sbjct: 13  PEIKVIKRDGRLVNFDATKIYSALLKASMKV----ARMSPLIEAKLEAISERVIAEINER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    I P++K++  DG L++F++ ++   + +A   +  +S           + V++E
Sbjct: 5   EEDKVLIQPEIKVIKRDGRLVNFDATKIYSALLKASMKVARMSPLIEAKLEAISERVIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  INERFPTNIKIYEIQNIV 82


>gi|89899182|ref|YP_521653.1| anaerobic ribonucleoside triphosphate reductase [Rhodoferax
           ferrireducens T118]
 gi|89343919|gb|ABD68122.1| Ribonucleoside-triphosphate reductase, anaerobic [Rhodoferax
           ferrireducens T118]
          Length = 675

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 12/116 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-IKNLTE-QTVTRLLQHNK 88
           +IKR+GG+  FD +KI+ A+ +A        A  S    D   + LT    + ++  H  
Sbjct: 12  IIKRDGGIKPFDGAKIAHALARA--------AQVSGEFDDTEAQRLTHYLVLPKIKVH-- 61

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             +  HIE IQD VE +L  +G+ K  R Y++YRE+   +R+ +           +
Sbjct: 62  GQVTPHIEQIQDAVESALFDAGYPKTLRAYIVYREQHHKLRSDRKTLVDVESSMNE 117


>gi|313890379|ref|ZP_07824010.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121222|gb|EFR44330.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 731

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD +KI  A++KA + V       S  V+  ++ ++E+ V  +   
Sbjct: 12  PDIKVIKRDGRLVSFDTTKIYSALLKASIEVTKM----SPLVEAKLEAISERVVAEIRDR 67

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 V I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 68  FPKN--VKIYEIQNIVEHELLSANEYAIAKEYINYRTQRDFARSQATDINFTID-----K 120

Query: 147 IMMDDGTLISFNSKR 161
           ++  D ++++ N+ +
Sbjct: 121 LLQKDQSVVNENANK 135



 Score = 41.4 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVL 182
            H K    + P +K++  DG L+SF++ ++   + +A   +  +S           + V+
Sbjct: 2   RHEKETIVVQPDIKVIKRDGRLVSFDTTKIYSALLKASIEVTKMSPLVEAKLEAISERVV 61

Query: 183 SETYKNMYDGLSESDLETAL 202
           +E        +   +++  +
Sbjct: 62  AEIRDRFPKNVKIYEIQNIV 81


>gi|311106099|ref|YP_003978952.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
 gi|310760788|gb|ADP16237.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans A8]
          Length = 668

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V +FD  KI++A+  A  +      +         + LT+  +  L       
Sbjct: 10  ILKRDGRVAAFDRDKIAQAMAAAGQSTGELDLAG-------AQTLTDGVIAALA----GN 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               +E IQ++VE +L+Q+GH +  R Y+++RE+ + +R+ +           +
Sbjct: 59  PCPGVETIQNRVEEALVQAGHWRTARAYIVHREQHARLRSLRHTLVDVESAMEE 112


>gi|225163579|ref|ZP_03725888.1| anaerobic ribonucleoside triphosphate reductase [Opitutaceae
           bacterium TAV2]
 gi|224801814|gb|EEG20101.1| anaerobic ribonucleoside triphosphate reductase [Opitutaceae
           bacterium TAV2]
          Length = 748

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 13/164 (7%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
                 VQV KR+G +  FD  +I+RA+ +A       G +       +   LT + +  
Sbjct: 19  AAPTLPVQVRKRDGRLVPFDAKRITRALSRA-------GTATGEFDDAMAHRLTLRVINL 71

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA--AQSHSKSDAP 140
           LL          +E +QD +E  L+ S   K  R  ++YR++   +R   A+        
Sbjct: 72  LLATVADT-TPTVEQVQDVIEEFLLDSPFRKTARALIVYRDQHKRLREVTARQDVALIDG 130

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEA---CSGLQDVSSKIV 181
              +L   + + + +S++ + L   +  A      L  +    +
Sbjct: 131 YLKQLDWQVRENSNMSYSLQGLNNYLSSAVSKTYWLNAIYPPEI 174


>gi|153853583|ref|ZP_01994963.1| hypothetical protein DORLON_00953 [Dorea longicatena DSM 13814]
 gi|149753738|gb|EDM63669.1| hypothetical protein DORLON_00953 [Dorea longicatena DSM 13814]
          Length = 729

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            VIKRNG   +FD  KI  AI  A   V+        ++  +  N+ ++          S
Sbjct: 8   NVIKRNGEEVAFDLEKIINAIKGANKDVDKLHRMNEYQIMAVADNVAKKIEE-------S 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
              V++EDIQD VE  +M+   +++ ++YV YR +R  +R   +       +   +   +
Sbjct: 61  THAVNVEDIQDMVETGIMELRGYEVAQKYVRYRYKRELMRKTNTTDNGILALLDHMNEEV 120

Query: 148 MMDDGTLISF 157
             ++      
Sbjct: 121 NQENSNKNPV 130


>gi|313892083|ref|ZP_07825679.1| anaerobic ribonucleoside-triphosphate reductase [Dialister
           microaerophilus UPII 345-E]
 gi|313119475|gb|EFR42671.1| anaerobic ribonucleoside-triphosphate reductase [Dialister
           microaerophilus UPII 345-E]
          Length = 730

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG   +FD SKI  AI KA   V+G        +  +           + +    
Sbjct: 9   KVIKRNGEEVTFDISKIVAAIEKANKEVDG--------IHRMNHYQICGVAETIAKFADK 60

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
            +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +       +       
Sbjct: 61  CSHAVHVEDIQDMVERGIMEMRAYEVAQKYVRYRYKREISRKSNTTDDGILSLIDLNNEE 120

Query: 147 IMMDDGTLISF 157
           +  ++      
Sbjct: 121 VKQENSNKNPI 131


>gi|329121537|ref|ZP_08250160.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Dialister micraerophilus DSM 19965]
 gi|327468836|gb|EGF14309.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Dialister micraerophilus DSM 19965]
          Length = 730

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG   +FD SKI  AI KA   V+G        +  +           + +    
Sbjct: 9   KVIKRNGEEVTFDISKIVAAIEKANKEVDG--------IHRMNHYQICGVAETIAKFADK 60

Query: 90  -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
            +  VH+EDIQD VE  +M+   +++ ++YV YR +R   R + +       +       
Sbjct: 61  CSHAVHVEDIQDMVERGIMEMRAYEVAQKYVRYRYKREISRKSNTTDDGILSLIDLNNEE 120

Query: 147 IMMDDGTLISF 157
           +  ++      
Sbjct: 121 VKQENSNKNPI 131


>gi|328543068|ref|YP_004303177.1| ribonucleotide-diphosphate reductase alpha subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326412814|gb|ADZ69877.1| Ribonucleotide-diphosphate reductase alpha subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 145

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
             + +D    +  A+EI P  +I++ +   + +DQ  SL L+  +  + + ++     AW
Sbjct: 56  PFMTNDNLDYYRDAYEIGPEKIIDTYAAATRHVDQGLSLTLFFRDSATTRDINRAQIHAW 115

Query: 894 LMGLKTTYYLR 904
             G+KT YY+R
Sbjct: 116 KKGIKTIYYIR 126


>gi|833145|emb|CAA24929.1| unnamed protein product [Human herpesvirus 2]
          Length = 109

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 828 DGSI-GNIERI-PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----P 880
             S+   +  + P    +   TAF+ D   LI+  + R  ++D +QS+ LY+ E      
Sbjct: 2   QWSVAQALPCLDPAHPLRRFKTAFDYDQELLIDLCADRAPYVDHSQSMTLYVTEKADGTL 61

Query: 881 SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910
               L  +   A+  GLKT  YY + R AT+
Sbjct: 62  PASTLVRLLVHAYKRGLKTGMYYCKVRKATN 92


>gi|310722633|ref|YP_003969456.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage phiAS5]
 gi|306021476|gb|ADM80010.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage phiAS5]
          Length = 703

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 11/103 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G V +FD S I  AI  +  ++                + TE  V +L+  N 
Sbjct: 1   MQVQKRDGRVVNFDQSFIETAISNSLKSINIT-------DPTFPHHATEAVVRKLIGRN- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               V IE+IQ  VE +LM+S +  + R Y+ YR +R   R  
Sbjct: 53  ---TVTIEEIQRVVEDTLMRSRYPAVARAYIEYRYDRDVARDM 92


>gi|167758690|ref|ZP_02430817.1| hypothetical protein CLOSCI_01031 [Clostridium scindens ATCC 35704]
 gi|167663886|gb|EDS08016.1| hypothetical protein CLOSCI_01031 [Clostridium scindens ATCC 35704]
          Length = 729

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            VIKR+G   SFD  KI  AI KA   V+        ++  I  N+  +           
Sbjct: 8   NVIKRSGEEVSFDLEKIINAIRKANKEVDRLHQMNEYQINAIADNIAHRVEEI------- 60

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
              V++EDIQD VE  +M+   +++ ++YV YR +R   R + +       +   +   +
Sbjct: 61  PHAVNVEDIQDMVETGIMEMRGYEVAQKYVRYRYKRELTRKSNTTDNGILSLLEHINEEV 120

Query: 148 MMDDGTLISF 157
             ++      
Sbjct: 121 NQENSNKNPV 130


>gi|260437342|ref|ZP_05791158.1| anaerobic ribonucleoside-triphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810254|gb|EFF69459.1| anaerobic ribonucleoside-triphosphate reductase [Butyrivibrio
           crossotus DSM 2876]
          Length = 708

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   ++D  KI  AI KA           S R+ D         V  + +   
Sbjct: 1   MKVIKRDGREVTYDRGKIIIAIHKA-----NDEVPISERISD---EKIHGIVASIEKLGV 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +   + +E+IQD +E  LM      + + Y++YR +R  +R 
Sbjct: 53  N--TLQVEEIQDIIEQKLMAERKFVLAKTYIIYRYQRQMIRK 92


>gi|304570577|ref|YP_386773.2| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 683

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + ++ P +I+ AI+KA  A   K    S R+   ++   E            
Sbjct: 4   QIQKRDGCLETWSPDRIALAILKALKASGIKDPLLSRRLARKVEQRLEGI---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
             +   E +QD +E  LM+S  + + R +++YRE R  +R  Q+     +    
Sbjct: 54  -DVPCQEQVQDTIEMILMESRLYHVARRFIIYRENRRQLREQQAAYLDISETID 106


>gi|121592522|ref|YP_984418.1| anaerobic ribonucleoside triphosphate reductase [Acidovorax sp.
           JS42]
 gi|120604602|gb|ABM40342.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax sp.
           JS42]
          Length = 678

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VI+RNG  T FD  +I  AI +A       G +     +D  + LT Q    L+      
Sbjct: 15  VIQRNGERTPFDAVRIQSAIARA-------GQATGEFGEDEARLLTAQATKVLIHRFH-G 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               IE IQD VE +L+ + H +  R Y+ YR+  + +RA +           +
Sbjct: 67  EAPTIEQIQDVVEQTLIAANHLQTARAYMAYRQRHATLRADRQTLVHVESSINE 120


>gi|242280970|ref|YP_002993099.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123864|gb|ACS81560.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
          Length = 686

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + S+   +IS AI KA  A   K    S R+   ++                
Sbjct: 4   QILKRDGCLESWSTERISEAIFKALKASGIKDPLLSKRLGRKVEEKLADV---------- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             +   E +QD V+  LM++  + +   Y++YRE+R ++R         A     
Sbjct: 54  -DVPEQEMVQDMVQLVLMENRLYSVAERYIIYREKRRELRRQDETYLDIAGTIES 107


>gi|125623154|ref|YP_001031637.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|4098081|gb|AAD00215.1| anaerobic ribonucleotide reductase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124491962|emb|CAL96888.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300069900|gb|ADJ59300.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 747

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ +  
Sbjct: 12  LEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDKS-------VLSELTDRVVSEIFS 64

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                  V I +IQ  VE  L++SG   +  EY+ YR  R   R   +            
Sbjct: 65  RFSEN--VKIYEIQSIVEQELLESGETALAEEYISYRANRDLARTKATDINFTIE----- 117

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 118 KLINRDQTVVNENANK 133



 Score = 45.2 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-------KIVLS 183
            ++  K       ++ ++  DG  + FNS+++   + +A   ++             V+S
Sbjct: 1   MKTEVKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDKSVLSELTDRVVS 60

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +    + +   ++++ +        E       ++ R
Sbjct: 61  EIFSRFSENVKIYEIQSIVEQELLESGETALAEEYISYR 99


>gi|229108907|ref|ZP_04238511.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
 gi|228674563|gb|EEL29803.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           Rock1-15]
          Length = 243

 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 7/243 (2%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +     E    Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVEERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLD 464
           FLD
Sbjct: 241 FLD 243


>gi|229816394|ref|ZP_04446699.1| hypothetical protein COLINT_03448 [Collinsella intestinalis DSM
           13280]
 gi|229808043|gb|EEP43840.1| hypothetical protein COLINT_03448 [Collinsella intestinalis DSM
           13280]
          Length = 740

 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI  A      +           +    +       +   
Sbjct: 1   MKIIKRSGSEVNFDIQKIIDAIKGA----NSEVKEAERLTDRQVVYAAQNVAD---RCES 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +   V +E+IQD VE  +M     ++ R Y++YR  +   R  
Sbjct: 54  AGHTVSVEEIQDMVEDEIMALDRFEVARRYIIYRYVQGLKRQK 96


>gi|165870353|ref|ZP_02215008.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0488]
 gi|167634338|ref|ZP_02392659.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0442]
 gi|167639266|ref|ZP_02397538.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0193]
 gi|170686841|ref|ZP_02878061.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0465]
 gi|170706345|ref|ZP_02896806.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0389]
 gi|177651553|ref|ZP_02934342.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0174]
 gi|190568126|ref|ZP_03021036.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035396|ref|ZP_03102801.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus W]
 gi|218902558|ref|YP_002450392.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH820]
 gi|227815801|ref|YP_002815810.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. CDC 684]
 gi|228926481|ref|ZP_04089553.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228932733|ref|ZP_04095605.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|229120990|ref|ZP_04250232.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|229603385|ref|YP_002865864.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus anthracis str. A0248]
 gi|164713848|gb|EDR19370.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0488]
 gi|167512705|gb|EDR88079.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0193]
 gi|167530226|gb|EDR92952.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0442]
 gi|170128879|gb|EDS97745.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0389]
 gi|170669364|gb|EDT20107.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0465]
 gi|172082831|gb|EDT67894.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Bacillus anthracis str. A0174]
 gi|190560860|gb|EDV14835.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992073|gb|EDX56036.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus W]
 gi|218535235|gb|ACK87633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus AH820]
 gi|227003555|gb|ACP13298.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. CDC 684]
 gi|228662650|gb|EEL18248.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           95/8201]
 gi|228826938|gb|EEM72700.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228833305|gb|EEM78870.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229267793|gb|ACQ49430.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus anthracis str. A0248]
          Length = 243

 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 7/243 (2%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLD 464
           FLD
Sbjct: 241 FLD 243


>gi|320527903|ref|ZP_08029070.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
 gi|320131699|gb|EFW24262.1| anaerobic ribonucleoside-triphosphate reductase [Solobacterium
           moorei F0204]
          Length = 647

 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
            +V KR+G   +F+  K++ AI KAF       A        +I  +  +  +      +
Sbjct: 3   YRVKKRDGSTAAFNIKKVASAIRKAF------DACDREYTDSVIDLIALRITSDFEPKIQ 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           ++ ++ +E IQD  E  L +SG+  +++ Y+LYR++R +VR
Sbjct: 57  NS-LIDVEKIQDSAEKVLSESGYADVSKAYILYRKQRENVR 96



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEA----CSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           ++   DG+  +FN K++   + +A         D    ++      +    +  S ++  
Sbjct: 4   RVKKRDGSTAAFNIKKVASAIRKAFDACDREYTDSVIDLIALRITSDFEPKIQNSLIDVE 63

Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
            I  S   +  E  YA V+  ++L + +RE
Sbjct: 64  KIQDSAEKVLSESGYADVSKAYILYRKQRE 93


>gi|193214776|ref|YP_001995975.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroherpeton
            thalassium ATCC 35110]
 gi|193088253|gb|ACF13528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
            [Chloroherpeton thalassium ATCC 35110]
          Length = 1966

 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 21/174 (12%)

Query: 788  NLYVKSNMSGDF--------TVVNSFLVNELKQRDLWDEAMISDLKYHDGS--IGNIERI 837
              + K  +  +F          +N    + LK        + +   Y  G+  I +   +
Sbjct: 1556 FAFNKWTLGEEFCKSLGFSEQELNDPNFDMLKSLGYAKAEIEAANDYICGTMMIEDAPHL 1615

Query: 838  PDDLKKIHATA--------FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888
              +   +   A          ID M  +   +  Q +I  A S  + +  E + +++  +
Sbjct: 1616 KPEHLPVFDCASKCGRKGKRYIDYMAHVRMMAAVQPFISGAISKTVNMPAEATVEQIREV 1675

Query: 889  YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942
            Y  +W   LK     R  S  S   ++    D  L+ + +     +      P 
Sbjct: 1676 YLSSWHYMLKAIALYRDTSKLSQPLNSASYDD--LDEIVMLGDEQTLDETKGPK 1727



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 59/282 (20%)

Query: 363 TRHPQLSSCFLTTVPD---DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
              PQ  +CF+ +V D   +  GIF  +   A + K+  G G +++ +R  G  + G  G
Sbjct: 175 YTRPQAHACFIQSVQDDLVNEGGIFDLVVREARVFKFGSGTGTNFSNIRAEGEMLSG-GG 233

Query: 420 KSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT-- 476
            S G++ FLK+ +  A A+  G   R+ A    +   H D+EEF++ +    +       
Sbjct: 234 TSSGLMSFLKIFDAAAGAIKSGGTTRRAAKMVIVNIDHPDIEEFIEWKAKEEEKVAAMVA 293

Query: 477 --------------------HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516
                                D  T   + DL  + + +                     
Sbjct: 294 GSKINSTFLKAILHEALENGADRKTNPALNDLIQRALYRGVPMNYILRTLSLVSQGFTSL 353

Query: 517 EFE--------IAY------------------------ENYERQADRGEIKVFRKISAVA 544
           +FE         AY                        +       R +  V R + A  
Sbjct: 354 DFESYDTHYESEAYSTVSGQNSNNTIRLTNEFMQAVENDEMWELRWRTDGSVCRTVRAAE 413

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586
           LW K+    ++   P + F    N      + G +++SN C 
Sbjct: 414 LWNKIAFSAWKCADPGLQFDTTINEWHTCPNDGRINASNPCV 455



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 596  ETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653
            +   CNL S+NL+          D D L    R     L+  + +  +   K  + ++ +
Sbjct: 831  DDTACNLASLNLIHFVNEKTGDVDTDALRHAARVWTLTLEISVLMAQYPSPKIAQQSYDY 890

Query: 654  RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713
            R +GLG     S L +   PY SP+A+ +A      ++  A + S E+A + GA+  F  
Sbjct: 891  RTLGLGFANLGSLLMVSGTPYDSPKALAVAGAISAIMTGEAYATSAEMAADIGAFPKFAH 950

Query: 714  SLWDQGVFPIDSIGL------------------LAEVRDELAMNRTSRLPWDELKKRVKT 755
            +         +                      L        + + +   WD   K  + 
Sbjct: 951  NRDAMLRVVRNHRHAAHNAPKEDYEDLSVVPMSLDPAHCPKKLCKVAGETWDRALKLGEK 1010

Query: 756  IGMRNSNCMAIAPTA 770
             G RN+    IAPT 
Sbjct: 1011 HGFRNAQVSVIAPTG 1025



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 771  TIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH- 827
            TI  +    +  I+P +  + + K    G F +VN  +   L      DE +     Y  
Sbjct: 1456 TIGLVMDCGTTGIEPDFAIVKFKKLAGGGYFKIVNQSVHKSLMNLGYSDEQIADIENYCK 1515

Query: 828  -DGSIGNIERIPDD 840
              G++     +  +
Sbjct: 1516 GHGTLEGAPFVTRE 1529


>gi|261405435|ref|YP_003241676.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus sp.
           Y412MC10]
 gi|261281898|gb|ACX63869.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus sp.
           Y412MC10]
          Length = 744

 Score = 92.6 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 23/185 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG-ASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G +  F+  +I  A+ +AFMAVEG      S+R+ D + + T           
Sbjct: 1   MKVMKRDGCLVKFETIRIVEAVDRAFMAVEGVSRKDASLRIGDEVAHATAGMEQ------ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +E+IQD V   L  +G+ ++   Y  YRE R   R  +            + +
Sbjct: 55  -----VSVEEIQDIVVEHLQSTGYPEVASAYQHYREARDLERMRRGEL--YKISRDVIGV 107

Query: 148 MMDDGTLISFNSK------RLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLET 200
              D    + N        ++  I  E    +   S  I+ +E  + + DG +   DL+ 
Sbjct: 108 TDLDLLRENANLNGESFSGKMSRIGSEYAKWMA--SKFILPTELTRAVRDGYVYVHDLDQ 165

Query: 201 ALIFS 205
             + +
Sbjct: 166 YALGT 170


>gi|52548444|gb|AAU82293.1| oxygen-sensitive ribonucleoside-triphosphate reductase [uncultured
           archaeon GZfos13E1]
          Length = 699

 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 13/159 (8%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++ KR+G V  FD  KI+        A+   GA+       I + LT + +    Q    
Sbjct: 4   KIRKRDGRVVRFDSKKIAD-------AIAKAGAATGEFDHKIARALTLKVLNLAQQAIPH 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA--AQSHSKSDAPIAPKLKI 147
             I  +E IQD VE  L+ S + K  R Y++YRE+ + +R   A++          KL  
Sbjct: 57  -RIPTVEGIQDVVEEVLLSSPYRKTARAYIIYREQHAGIREITAKADVDMVDQYLEKLDW 115

Query: 148 MMDDGTLISFNSKRLEMIVEEA---CSGLQDVSSKIVLS 183
            +++ + ++F+ + L   +         L  +    +  
Sbjct: 116 QVNENSNMTFSLQGLNNYISSEISKTYWLIKIYPSEIRQ 154


>gi|281490762|ref|YP_003352742.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374531|gb|ADA64052.1| Anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 747

 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
             S        ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  
Sbjct: 1   MKSEVKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSE 53

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT++ V+ +         V I +IQ  VE  L++SG  ++  EY+ YR  R   R   + 
Sbjct: 54  LTDRVVSEIFTRFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATD 111

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKR 161
                      K++  D T+++ N+ +
Sbjct: 112 INFTIE-----KLINRDQTVVNENANK 133



 Score = 45.2 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-------SKIVLS 183
            +S  K       ++ ++  DG  + FNS+++   + +A   ++          +  V+S
Sbjct: 1   MKSEVKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMSVLSELTDRVVS 60

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +    + +   ++++ +        E +     ++ R
Sbjct: 61  EIFTRFSENVKIYEIQSIVEQELLESGETQLAEEYISYR 99


>gi|317407422|gb|EFV87384.1| anaerobic ribonucleoside-triphosphate reductase [Achromobacter
           xylosoxidans C54]
          Length = 666

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G V +FD  KI+        A+   G        D+ + LT   +  L       
Sbjct: 6   ILKRDGRVVAFDRDKIAA-------AIAAAGRGTGELDADVAQALTGAVIEALAAE--GN 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
           +   +E IQ+QVE +L+++G+ +  R Y++YRE+ + +RA +           +  +   
Sbjct: 57  VCPGVETIQNQVEETLVKAGYWRTARAYIVYREQHARLRALRHTLVDVESAMEE-YLEQR 115

Query: 151 D 151
           D
Sbjct: 116 D 116


>gi|289568498|ref|ZP_06448725.1| predicted protein [Mycobacterium tuberculosis T17]
 gi|289542252|gb|EFD45900.1| predicted protein [Mycobacterium tuberculosis T17]
          Length = 114

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA EI P W +      Q+ ++ A S  + L    +   +  IY  AW   +K     R 
Sbjct: 20  TAAEIAPQWHVRMQGAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRY 79

Query: 906 RSATSVEKS 914
            S      S
Sbjct: 80  GSREGQVLS 88


>gi|445482|prf||1909271A ribonucleotide reductase mutant
          Length = 214

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           + R     L+ R+ + G+ N+  +A+ PT + + +   S+   P++ N++ K  +SG+  
Sbjct: 89  SERPTGVCLRVRIASTGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELL 148

Query: 801 VVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGNI-ERIPDDLK-KIHATAFEIDPMW 855
             N  L+  L++   R+      ++ L+    S+      +P         TAFE D   
Sbjct: 149 RPNLPLMETLRRLFPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQEL 208

Query: 856 LIESAS 861
           LI+  +
Sbjct: 209 LIDMCA 214


>gi|332671990|ref|YP_004454998.1| anaerobic ribonucleoside-triphosphate reductase [Cellulomonas fimi
           ATCC 484]
 gi|332341028|gb|AEE47611.1| anaerobic ribonucleoside-triphosphate reductase [Cellulomonas fimi
           ATCC 484]
          Length = 752

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
               P    G+ V KR+G V  FDP ++  A+ +AF  V G            I  L E+
Sbjct: 21  TTQSPSTAAGLVVRKRDGRVLPFDPIRVHSALGRAFAHVHGLLGPLQ---DLTIAELVER 77

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               L         V I +IQ+ VE +L+++  +++   Y+ YR +R   R+ 
Sbjct: 78  IDAELAARF--TGEVRIYEIQNVVEHTLLEAREYEVAEAYIDYRVQRDLARSK 128


>gi|326405849|gb|ADZ62920.1| anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 747

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
             S        ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  
Sbjct: 1   MKSEVKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSE 53

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT++ V+ +         V I +IQ  VE  L++SG  ++  EY+ YR  R   R   + 
Sbjct: 54  LTDRVVSEIFTRFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATD 111

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKR 161
                      K++  D T+++ N+ +
Sbjct: 112 INFTIE-----KLINRDQTVVNENANK 133



 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-------SKIVLS 183
            +S  K       ++ ++  DG  + FNS+++   + +A   ++          +  V+S
Sbjct: 1   MKSEVKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMSVLSELTDRVVS 60

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +    + +   ++++ +        E +     ++ R
Sbjct: 61  EIFTRFSENVKIYEIQSIVEQELLESGETQLAEEYISYR 99


>gi|323128211|gb|ADX25508.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 732

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 70/135 (51%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  ++  ++ ++E+ +  + + 
Sbjct: 13  PEIKVIKRDGRLVNFDATKIYSALLKASMKVTRM----SPLIEAKLEAISERVIAEINER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    I P++K++  DG L++F++ ++   + +A   +  +S           + V++E 
Sbjct: 6   EDKVLIQPEIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLIEAKLEAISERVIAEI 65

Query: 186 YKNMYDGLSESDLETAL 202
            +     +   +++  +
Sbjct: 66  NERFPTNIKIYEIQNIV 82


>gi|164686917|ref|ZP_02210945.1| hypothetical protein CLOBAR_00514 [Clostridium bartlettii DSM
           16795]
 gi|164604040|gb|EDQ97505.1| hypothetical protein CLOBAR_00514 [Clostridium bartlettii DSM
           16795]
          Length = 786

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    FD + I++AI  A  A E      +    +I + +  Q V+ LL      
Sbjct: 5   IKKRDGRKVLFDKNCITKAIFAA--ASEVAEKENTEPNYEIAEGVAAQVVS-LLNKKFVD 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
            I  +EDIQD V   L+++GH K +  ++LYR ERS +R ++S  
Sbjct: 62  KIPTVEDIQDAVVKVLIENGHAKTSEAFILYRNERSRIRNSKSRL 106


>gi|15672255|ref|NP_266429.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|12723134|gb|AAK04371.1|AE006264_10 anaerobic ribonucleoside-triphosphate reductase [Lactococcus lactis
           subsp. lactis Il1403]
          Length = 747

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)

Query: 15  FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
             S        ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  
Sbjct: 1   MKSEVKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSE 53

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134
           LT++ V+ +         V I +IQ  VE  L++SG  ++  EY+ YR  R   R   + 
Sbjct: 54  LTDRVVSEIFTRFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATD 111

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKR 161
                      K++  D T+++ N+ +
Sbjct: 112 INFTIE-----KLINRDQTVVNENANK 133



 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-------SKIVLS 183
            +S  K       ++ ++  DG  + FNS+++   + +A   ++          +  V+S
Sbjct: 1   MKSEVKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMSVLSELTDRVVS 60

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +    + +   ++++ +        E +     ++ R
Sbjct: 61  EIFTRFSENVKIYEIQSIVEQELLESGETQLAEEYISYR 99


>gi|312961516|ref|ZP_07776017.1| anaerobic class III ribonucleotide reductase [Pseudomonas
           fluorescens WH6]
 gi|311284195|gb|EFQ62775.1| anaerobic class III ribonucleotide reductase [Pseudomonas
           fluorescens WH6]
          Length = 666

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 33  KRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
           KR+G +  F+P KI +A++ A  A      +        +  L    +       +S   
Sbjct: 15  KRDGSLAPFNPEKIRQALIAAGTATGEYQEAD-------VDLLLGAVLA----RLRSIDH 63

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           + +E IQD VE  LM +G+    R Y++YRE+   +R  +      A    +
Sbjct: 64  LDVEQIQDSVERVLMDAGYFLSMRAYIVYREQHGRLRRDRKTLVEVATSMNE 115


>gi|257867913|ref|ZP_05647566.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257874242|ref|ZP_05653895.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257801996|gb|EEV30899.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257808406|gb|EEV37228.1| ribonucleoside-triphosphate reductase [Enterococcus casseliflavus
           EC10]
          Length = 730

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P         ++ ++++KR+G +  FD  KI  A++KA   + G     S    + I  +
Sbjct: 7   PEQGLERQSALRQLKIVKRDGRLVDFDDQKIYDALVKALRKING---ELSPIDHEKITEI 63

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
            +     + +  ++   V I +IQ+ VE  L+    + +  EY+ YR  R   R+  +  
Sbjct: 64  VDSVDHEIAERFRTN--VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERSKATDI 121

Query: 136 K 136
            
Sbjct: 122 N 122


>gi|134094879|ref|YP_001099954.1| anaerobic ribonucleoside triphosphate reductase [Herminiimonas
           arsenicoxydans]
 gi|133738782|emb|CAL61829.1| anaerobic class III ribonucleotide reductase NrdD [Herminiimonas
           arsenicoxydans]
          Length = 673

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G +  FD  KI  A+++A           S      +       V          
Sbjct: 12  VVKRDGSIKPFDAGKIESALLRA--------GLASGEFDAGVAKNLSARVALARISFHEQ 63

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            + HIE IQD VE  L  +G+ K  R Y +YRE+   +R  +           +
Sbjct: 64  DVPHIEQIQDAVETVLFDTGYRKTLRAYTVYREQHQKLRRDRKTLVDVESSMNE 117


>gi|116511094|ref|YP_808310.1| anaerobic ribonucleoside triphosphate reductase [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116106748|gb|ABJ71888.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 747

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++ + VIKR+G    F+  KI  A+ KA   VE    S       ++  LT++ V+ +  
Sbjct: 12  LEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMS-------VLSELTDRVVSEIFT 64

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                  V I +IQ  VE  L++SG  ++  EY+ YR  R   R   +            
Sbjct: 65  RFSEN--VKIYEIQSIVEQELLESGETQLAEEYISYRANRDLARTKATDINFTIE----- 117

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 118 KLINRDQTVVNENANK 133



 Score = 45.6 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-------SKIVLS 183
            +S  K       ++ ++  DG  + FNS+++   + +A   ++          +  V+S
Sbjct: 1   MKSEIKYQDVTLEEINVIKRDGRSVKFNSEKIFDALTKAAKKVELTDMSVLSELTDRVVS 60

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +    + +   ++++ +        E +     ++ R
Sbjct: 61  EIFTRFSENVKIYEIQSIVEQELLESGETQLAEEYISYR 99


>gi|225869406|ref|YP_002745354.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702682|emb|CAX00785.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 732

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++E+ +  +++ 
Sbjct: 13  PAIKVIKRDGRLVNFDATKIYSALLKASMKVTRM----SPLVEAKLEAISERVIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK--SDAPIAPK 144
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +      D  I   
Sbjct: 69  FPTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDINFSIDKLIHKD 126

Query: 145 LKIMMDD 151
             ++ ++
Sbjct: 127 QTVVNEN 133



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    + P +K++  DG L++F++ ++   + +A   +  +S           + V++E
Sbjct: 5   EKDKVIVQPAIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLVEAKLEAISERVIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|225871404|ref|YP_002747351.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. equi 4047]
 gi|225700808|emb|CAW95505.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus equi
           subsp. equi 4047]
          Length = 732

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++E+ +  +++ 
Sbjct: 13  PAIKVIKRDGRLVNFDATKIYSALLKASMKVTRM----SPLVEAKLEAISERVIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK--SDAPIAPK 144
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +      D  I   
Sbjct: 69  FPTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDINFSIDKLIHKD 126

Query: 145 LKIMMDD 151
             ++ ++
Sbjct: 127 QTVVNEN 133



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    + P +K++  DG L++F++ ++   + +A   +  +S           + V++E
Sbjct: 5   EKDKVIVQPAIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLVEAKLEAISERVIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|195978954|ref|YP_002124198.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975659|gb|ACG63185.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 732

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++E+ +  +++ 
Sbjct: 13  PAIKVIKRDGRLVNFDATKIYSALLKASMKVTRM----SPLVEAKLEAISERVIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK--SDAPIAPK 144
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +      D  I   
Sbjct: 69  FPTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDINFSIDKLIHKD 126

Query: 145 LKIMMDD 151
             ++ ++
Sbjct: 127 QTVVNEN 133



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    + P +K++  DG L++F++ ++   + +A   +  +S           + V++E
Sbjct: 5   EKDKVIVQPAIKVIKRDGRLVNFDATKIYSALLKASMKVTRMSPLVEAKLEAISERVIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|325570716|ref|ZP_08146442.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
 gi|325156562|gb|EGC68742.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus casseliflavus ATCC 12755]
          Length = 731

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 16  PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
           P         ++ ++++KR+G +  FD  KI  A++KA   + G     S    + I  +
Sbjct: 8   PEQGLERQSALRQLKIVKRDGRLVDFDDQKIYDALVKALRKING---ELSPIDHEKITEI 64

Query: 76  TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
            +     + +  ++   V I +IQ+ VE  L+    + +  EY+ YR  R   R+  +  
Sbjct: 65  VDSVDHEIAERFRTN--VKIYEIQNIVEHILLAKNEYALAEEYINYRTHRDFERSKATDI 122

Query: 136 K 136
            
Sbjct: 123 N 123


>gi|49184284|ref|YP_027536.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Sterne]
 gi|49477194|ref|YP_035575.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|65318720|ref|ZP_00391679.1| COG0209: Ribonucleotide reductase, alpha subunit [Bacillus
           anthracis str. A2012]
 gi|254682486|ref|ZP_05146347.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726149|ref|ZP_05187931.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. A1055]
 gi|254733902|ref|ZP_05191616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740408|ref|ZP_05198099.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Kruger B]
 gi|254753799|ref|ZP_05205834.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Vollum]
 gi|254758894|ref|ZP_05210921.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           anthracis str. Australia 94]
 gi|49178211|gb|AAT53587.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           anthracis str. Sterne]
 gi|49328750|gb|AAT59396.1| ribonucleoside-diphosphate reductase alpha chain, N-terminal region
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 255

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 7/243 (2%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252

Query: 462 FLD 464
           FLD
Sbjct: 253 FLD 255


>gi|299821095|ref|ZP_07052983.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Listeria grayi DSM 20601]
 gi|299816760|gb|EFI83996.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Listeria grayi DSM 20601]
          Length = 717

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FDP KI +AI+ A  A E          ++ I    E  V  L       
Sbjct: 11  VEKRDGRQVDFDPGKIRKAILAAMNAQE-------TDAENQIDVFLENIVNELAN----D 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            ++ IE IQ+ VE  LM+S +  + R Y+ YR +R   R 
Sbjct: 60  TVLTIEKIQETVENVLMKSEYPDVARAYIEYRHDRDSERD 99


>gi|237736598|ref|ZP_04567079.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420460|gb|EEO35507.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           mortiferum ATCC 9817]
          Length = 729

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G +  FD  +I RA+  AF    G          ++++ +T Q      +    
Sbjct: 3   EVIKRDGAIVEFDRDRIVRAMTMAFKQSSGTVN------NELVEKITTQIENMDNKRM-- 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
               H+EDIQD V   LM S    I   Y  YR  ++++R  +     +        +  
Sbjct: 55  ----HVEDIQDIVVKKLMASSEKDIAIAYQSYRAIKTEIRNKEKGIYKNIAEL----VDA 106

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSS-----KIVLSETYKNMYD--GLSESDLETAL 202
            +  ++S N+ +    +      L  +SS       +L +  K  ++   +   DL+  L
Sbjct: 107 SNEDILSENANKDAKTISVQRDLLAGISSKDYYLNKILPKHLKKAHETGEIHIHDLDYLL 166


>gi|315301268|ref|ZP_07872490.1| anaerobic ribonucleoside-triphosphate reductase [Listeria ivanovii
           FSL F6-596]
 gi|313630362|gb|EFR98273.1| anaerobic ribonucleoside-triphosphate reductase [Listeria ivanovii
           FSL F6-596]
          Length = 598

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            ++  E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------ESFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 46/129 (35%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   +E +   +        + VL E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAIEASMKAINLEDESFLEEVLLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +++ ++  +   +    P+     AR  +E        RE +T ++K  +K    +  
Sbjct: 64  IDEIQNSVENTL--MKSTYPD----VARAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|319945850|ref|ZP_08020100.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus australis ATCC 700641]
 gi|319747915|gb|EFW00159.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus australis ATCC 700641]
          Length = 736

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           +L     + +  + V KR+G    FD  KI RA++KA   V G   +    ++  ++ +T
Sbjct: 3   TLREEHIQSLPQLFVEKRDGRKVKFDVDKIYRALVKATEEVTGLTPA----LEAKLETVT 58

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           ++ V  +L+       V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+  +   
Sbjct: 59  DRIVAEILERFPRG--VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERSKATDIN 116



 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +      P+L +   DG  + F+  ++   + +A   +  ++             +++E 
Sbjct: 6   EEHIQSLPQLFVEKRDGRKVKFDVDKIYRALVKATEEVTGLTPALEAKLETVTDRIVAEI 65

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +    G+   +++  +        E     + +T R
Sbjct: 66  LERFPRGVKIYEIQNVVEHELLQANEYAIAESYITYR 102


>gi|222109329|ref|YP_002551593.1| anaerobic ribonucleoside triphosphate reductase [Acidovorax ebreus
           TPSY]
 gi|221728773|gb|ACM31593.1| anaerobic ribonucleoside-triphosphate reductase [Acidovorax ebreus
           TPSY]
          Length = 675

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VI+RNG  T FD  +I  AI +A       G +     +D  + LT Q    L+      
Sbjct: 15  VIQRNGERTPFDAVRIQSAIARA-------GQATGEFGEDEARLLTAQATKVLIHRFH-G 66

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               IE IQD VE +L+ + H +  R Y+ YR+  + +RA +           +
Sbjct: 67  EAPAIEQIQDVVEQTLIAANHLQTARAYMAYRQRHATLRADRQTLVHVESSINE 120


>gi|297243781|ref|ZP_06927711.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis AMD]
 gi|296888202|gb|EFH26944.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis AMD]
          Length = 805

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M   ++      +         P  +  VQV KR+G V  FDP  I  AI  AF   +  
Sbjct: 1   MQVLEETAVTSAENCTDDVVEAP--VSRVQVEKRDGRVVDFDPLNIIMAIKAAF---KDL 55

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
           G     + + +I+++++     +           IEDIQ  VE SL+++  +++ R Y  
Sbjct: 56  GKEVGPQEEQMIRDISDHIEAEIQDRY--NGPAKIEDIQTLVEHSLIENHLYEVARCYTS 113

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKR 161
           YR  R   RA  +            +++  D +L+  N+ +
Sbjct: 114 YRLNRDIDRAKATDINEAVN-----RLVNRDESLVRENANK 149


>gi|228957723|ref|ZP_04119467.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801966|gb|EEM48839.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 243

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 7/243 (2%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            + + +R  G  I G +  + GV+P +K+  D+    NQ G+RKGA   YL  +H D+ E
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240

Query: 462 FLD 464
           FLD
Sbjct: 241 FLD 243


>gi|197287263|ref|YP_002153135.1| anaerobic ribonucleoside triphosphate reductase [Proteus mirabilis
           HI4320]
 gi|227357040|ref|ZP_03841410.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           ATCC 29906]
 gi|194684750|emb|CAR46763.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           HI4320]
 gi|227162732|gb|EEI47695.1| anaerobic ribonucleoside-triphosphate reductase [Proteus mirabilis
           ATCC 29906]
          Length = 712

 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD ++IS AI +A         +  I   D  + + +     L   +   
Sbjct: 5   VIKRDGCKVSFDQTRISDAIKRA-------AEACQITDDDYCEFVAQSVSQSLAGRS--- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   H  I R Y+ YR +R   R  +     +
Sbjct: 55  -NVDIREIQDAVENQLMAGEHKDIARAYIEYRHDRDVAREQRGRLTQE 101


>gi|163815689|ref|ZP_02207061.1| hypothetical protein COPEUT_01869 [Coprococcus eutactus ATCC 27759]
 gi|158448994|gb|EDP25989.1| hypothetical protein COPEUT_01869 [Coprococcus eutactus ATCC 27759]
          Length = 720

 Score = 91.8 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 23/166 (13%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + VIKR+G   ++D SKI  AI KA   VE           + I+++      +  +  
Sbjct: 12  EMLVIKRDGRAVNYDRSKIILAIQKANSEVE----PCEKISDEKIEDIVGSIEAKNRKRM 67

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                  +EDIQD +E  +M  G   + + Y++YR  R  +R A +   S   +     I
Sbjct: 68  L------VEDIQDIIEQGIMADGKFVLAKTYIIYRYSRELIRKANTTDDSILSL-----I 116

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
              +  ++  NS +    V      L       +  E  K++   +
Sbjct: 117 QNRNKDVMEENSNK-NATVASTQRDL-------IAGEVSKDLTKRM 154


>gi|269123987|ref|YP_003306564.1| anaerobic ribonucleoside-triphosphate reductase [Streptobacillus
           moniliformis DSM 12112]
 gi|268315313|gb|ACZ01687.1| anaerobic ribonucleoside-triphosphate reductase [Streptobacillus
           moniliformis DSM 12112]
          Length = 704

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 12/103 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++KR+G    +D +KI  AI KA                ++ + +  + +  ++QH +
Sbjct: 1   MNILKRDGREEKYDSNKIRDAINKA------------NETVELKERICNKKIEEIIQHIE 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +  I  +E+IQD +E SL+  G +K+ + Y++YR  RS VR A
Sbjct: 49  NEKISTVEEIQDFIEKSLVSEGLYKLAKNYIVYRYTRSLVRKA 91


>gi|289433629|ref|YP_003463501.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169873|emb|CBH26413.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 716

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------EPFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS--HSKSDAPIAPKLKIM 148
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +  H   +  +     ++
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVEKLLQKDKTVI 119

Query: 149 MDD 151
            ++
Sbjct: 120 NEN 122



 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 46/129 (35%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   +E +   +        + VL E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAIEASMKAINLEDEPFLEEVLLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +++ ++  +   +    P+     AR  +E        RE +T ++K  +K    +  
Sbjct: 64  IDEIQNSVENTL--MKSTYPD----VARAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VINENANKD 126


>gi|322412843|gb|EFY03751.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 732

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 70/135 (51%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  ++  ++ ++E+ +  + + 
Sbjct: 13  PEIKVIKRDGRLVNFDTTKIYSALLKASMKVTRM----SPLIEAKLEAISERVIAEINER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    I P++K++  DG L++F++ ++   + +A   +  +S           + V++E
Sbjct: 5   EEDKVLIQPEIKVIKRDGRLVNFDTTKIYSALLKASMKVTRMSPLIEAKLEAISERVIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  INERFPTNIKIYEIQNIV 82


>gi|191636946|ref|YP_001986112.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           casei BL23]
 gi|190711248|emb|CAQ65254.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           casei BL23]
 gi|327380973|gb|AEA52449.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei LC2W]
 gi|327384149|gb|AEA55623.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei BD-II]
          Length = 727

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  FD SKIS AI KA  +V    A  +      I +LT+    ++      
Sbjct: 7   QIKKRDGRIVDFDASKISTAITKAAESV----AKLAPSDVLTIDHLTDTVTAKIRDRYHD 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V I +IQ  VE +L+ +  +     Y  YR +R   R  +     +       +++ 
Sbjct: 63  D--VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVS-----RLVN 115

Query: 150 DDGTLISFNSKRLEMIVE 167
            D ++++ N+ +   +  
Sbjct: 116 RDESVVNENANKDSRVFS 133



 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL----------SETYKNMYDGLSE 195
           +I   DG ++ F++ ++   + +A   +  ++   VL          ++     +D +  
Sbjct: 7   QIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDDVEI 66

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++++T +  +     +     A    R   +  R++     Y   +     E
Sbjct: 67  AEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVSRLVNRDE 118


>gi|227533385|ref|ZP_03963434.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227188951|gb|EEI69018.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 727

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  FD SKIS AI KA  +V    A  +      I +LT+    ++      
Sbjct: 7   QIKKRDGRIVDFDASKISTAITKAAESV----AKLAPSDVLTIDHLTDTVTAKIRDRYHD 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V I +IQ  VE +L+ +  +     Y  YR +R   R  +     +       +++ 
Sbjct: 63  D--VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVS-----RLVN 115

Query: 150 DDGTLISFNSKRLEMIVE 167
            D ++++ N+ +   +  
Sbjct: 116 RDESVVNENANKDSRVFS 133



 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL----------SETYKNMYDGLSE 195
           +I   DG ++ F++ ++   + +A   +  ++   VL          ++     +D +  
Sbjct: 7   QIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDDVEI 66

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++++T +  +     +     A    R   +  R++     Y   +     E
Sbjct: 67  AEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVSRLVNRDE 118


>gi|111184259|gb|ABH08179.1| HSPV074c [Horsepox virus]
          Length = 124

 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307
           M+ L+     +  +       +   +++     L + + YER+F++ Y G + L   Y L
Sbjct: 1   MKDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERNFSYNYFGFKTLEKSYLL 60

Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367
            IN   +E PQ   MRVA+ +          A+E YNLLS   F  ++PTLFN+ T   Q
Sbjct: 61  KINNKIVEKPQHMLMRVAVKIHQ---WNIDLAIETYNLLSEKWFTHASPTLFNARTSRHQ 117

Query: 368 LSSCF 372
           +S CF
Sbjct: 118 MSRCF 122


>gi|242280417|ref|YP_002992546.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123311|gb|ACS81007.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           salexigens DSM 2638]
          Length = 683

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q++KR+G + ++   +I++AI KA        ++  I+   + K +  +   +L      
Sbjct: 4   QIMKRDGRLETWSTERIAQAIFKAL-------SASGIKDPLMAKRMARKVEYKLE----G 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
             I   E +Q+ VE  LM S  H + ++++LYR+ R  +R  +           +
Sbjct: 53  VDIPEQEHVQNMVEEVLMDSRLHSVAKKFILYRDSRRRLRNQKDAYLDIKETIDE 107


>gi|239630945|ref|ZP_04673976.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301065267|ref|YP_003787290.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei str. Zhang]
 gi|239527228|gb|EEQ66229.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300437674|gb|ADK17440.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Lactobacillus casei str. Zhang]
          Length = 727

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G +  FD SKIS AI KA  +V    A  +      I +LT+    ++      
Sbjct: 7   QIKKRDGRIVDFDASKISTAITKAAESV----AKLAPSDVLTIDHLTDTVTAKIRDRYHD 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V I +IQ  VE +L+ +  +     Y  YR +R   R  +     +       +++ 
Sbjct: 63  D--VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVS-----RLVN 115

Query: 150 DDGTLISFNSKRLEMIVE 167
            D ++++ N+ +   +  
Sbjct: 116 RDESVVNENANKDSRVFS 133



 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL----------SETYKNMYDGLSE 195
           +I   DG ++ F++ ++   + +A   +  ++   VL          ++     +D +  
Sbjct: 7   QIKKRDGRIVDFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDDVEI 66

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++++T +  +     +     A    R   +  R++     Y   +     E
Sbjct: 67  AEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVSRLVNRDE 118


>gi|313635001|gb|EFS01380.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           FSL N1-067]
          Length = 716

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------EPFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 46/129 (35%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   +E +   +        + VL E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAIEASMKAINLEDEPFLEEVLLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +++ ++  +   +    P+     AR  +E        RE +T ++K  +K    +  
Sbjct: 64  IDEIQNSVENTL--MKSTYPD----VARAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|254966981|gb|ACT97524.1| putative ribonucleotide reductase [uncultured organism]
          Length = 279

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 39/283 (13%)

Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346
           F  + L   +   +Y L  + G   E  P+    R+A  +   E          E + LL
Sbjct: 26  FDGDDLAATVWVSKYALKDSYGHIYEKTPRDMHERIAAEIERIEKKYPNPMNRQEVFELL 85

Query: 347 SSFHFMCSTPTLFNSGTRHPQ---LSSCFLT---TVPDDLYGIFGALQENAMLAKYSGGL 400
             F ++            + Q   LS+CF+       D   GIF   +E   L K  GG+
Sbjct: 86  DHFRYIIPQGGPMTGIGNNFQAASLSNCFVIGHKNPADSYGGIFRMDEEQVQLMKRRGGV 145

Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
           G+D + +R  G+ +  +   S G++PF++  +++         R+GA+   L   H D E
Sbjct: 146 GHDLSHIRPTGSPVLNSALTSTGIVPFMERYSNSTR-EVAQDGRRGALMLTLSIKHPDAE 204

Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520
            F+D + +T     +    N +  I D FM+       +    P                
Sbjct: 205 RFIDAKVDTS----KVTGANVSVKIDDEFMRAALAGKKYHQQFP---------------- 244

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563
                       +    + I A  LW K++   +++  P +  
Sbjct: 245 --------IHSDKPLYQQDIDAKKLWDKIIHNAWKSAEPGVMC 279


>gi|168188057|ref|ZP_02622692.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169294101|gb|EDS76234.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 705

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAV-EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           VIKR+G    F+ ++I  AI  A     +G     S+ + + I  +             +
Sbjct: 5   VIKRDGREVEFNINRIVNAIELAMKDTKQGIEKDLSVHIANDISEI-------------N 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
              + +E+IQD VE  LM S    + +EY+ YR ER+  R ++S+          +K   
Sbjct: 52  KDKITVEEIQDLVEDKLMDSR-KDVAKEYIKYRNERTKARDSKSNVFEKMQDTFDMKSED 110

Query: 148 MMDDGTLISFNSKRLEMIVEE-ACSGL--QDVSSKIVLSETYKNMYD 191
             D+        +    ++ + AC          + +L E  K +Y+
Sbjct: 111 NRDNANKAGDKLQTYRAMIADIACREFARTKTIPEKILKEHKKTIYN 157


>gi|226329644|ref|ZP_03805162.1| hypothetical protein PROPEN_03554 [Proteus penneri ATCC 35198]
 gi|225202830|gb|EEG85184.1| hypothetical protein PROPEN_03554 [Proteus penneri ATCC 35198]
          Length = 533

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD ++IS AI +A +A E       + V   +                  
Sbjct: 5   VIKRDGCKVSFDQTRISDAIKRAAVACEITDDDYCVSVAQSVSQ-----------SLAGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   H  + R Y+ YR +R   R  +     +
Sbjct: 54  SNVDIREIQDAVENQLMAGKHKDVARAYIEYRHDRDVAREQRGRLTQE 101


>gi|313639674|gb|EFS04463.1| anaerobic ribonucleoside-triphosphate reductase [Listeria seeligeri
           FSL S4-171]
          Length = 716

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  AI  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAIEASMKAINLED-----------EPFLEEVLLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ+ VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQNSVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 46/129 (35%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   +E +   +        + VL E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAIEASMKAINLEDEPFLEEVLLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +++ ++  +   +    P+     AR  +E        RE +T ++K  +K    +  
Sbjct: 64  IDEIQNSVENTL--MKSTYPD----VARAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|189485584|ref|YP_001956525.1| putative ribonucleoside-triphosphate reductase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287543|dbj|BAG14064.1| putative ribonucleoside-triphosphate reductase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 708

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KRNG   +F+  KIS AI KA       G +     QD    L  + ++ LL   +  
Sbjct: 10  IVKRNGTKEAFNSKKISAAIAKA-------GETTGEFGQDTANKLAIKALSLLLDTIED- 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               +E +QD VE  L+ S + K  R Y+LYR++ S +R 
Sbjct: 62  RKPTVEKVQDAVEEVLLYSKYKKTARAYILYRDQHSKIRE 101


>gi|38639964|ref|NP_943919.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage Aeh1]
 gi|33414653|gb|AAQ17696.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage Aeh1]
          Length = 704

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G V  FD S I  AI  +  ++        I       + TE  V +L+  N 
Sbjct: 1   MQVQKRDGRVVDFDQSFIETAITNSLQSIN-------IIDPTFPHHATEAVVRKLIGRN- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              +V IE+IQ  VE +LM+S +  + R Y+ YR +R   R 
Sbjct: 53  ---LVTIEEIQHVVEDTLMKSRYPAVARSYIEYRYDRDVARD 91


>gi|313885613|ref|ZP_07819363.1| anaerobic ribonucleoside-triphosphate reductase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619343|gb|EFR30782.1| anaerobic ribonucleoside-triphosphate reductase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 746

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  +QVIKR+    +FD SKI  AI KA   VEG+ +  S R+ + I+ L  + +T + +
Sbjct: 13  LASMQVIKRDKRQVAFDASKIQVAIEKAVTEVEGQVS--SQRLVE-IEALVAEILTTIQE 69

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  ++I +IQ  VE  L+QS   ++   Y+ YR ++   RA
Sbjct: 70  RFTRD--INIYEIQSIVEQHLLQSNMPEVAHAYIDYRVKQDFARA 112


>gi|329926784|ref|ZP_08281192.1| ATP cone domain protein [Paenibacillus sp. HGF5]
 gi|328938984|gb|EGG35352.1| ATP cone domain protein [Paenibacillus sp. HGF5]
          Length = 154

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 14/133 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG-ASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++V+KR+G +  F+ S+I  A+ KAFMAVEG      S+R+ D + + T           
Sbjct: 1   MKVMKRDGCLVKFETSRIVEAVDKAFMAVEGVSRKDASLRIGDEVAHATAGMEQ------ 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V +E+IQD V   L  +G+ ++   Y  YRE R   R  +            + +
Sbjct: 55  -----VSVEEIQDIVVEHLQSTGYPEVAAAYQHYREARDLERMRRGEL--YKISRDVIGV 107

Query: 148 MMDDGTLISFNSK 160
              D    + N  
Sbjct: 108 TDLDLLRENANLN 120


>gi|90408371|ref|ZP_01216534.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas sp.
           CNPT3]
 gi|90310534|gb|EAS38656.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas sp.
           CNPT3]
          Length = 705

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I+ AI+KA         +   +  D            +    +  
Sbjct: 5   VIKRDGSQVPFNALRIAEAILKA-------SGAARCKDVD-----AFAIAKEVELRLQGQ 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I  IQD VE SLM+SGH ++ R Y+ YR +R   R  +S   S+  
Sbjct: 53  KEVDIHHIQDAVEASLMKSGHIELARVYIEYRHDRDIARERKSQLNSEIH 102


>gi|329115737|ref|ZP_08244454.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parauberis NCFD 2020]
 gi|326906142|gb|EGE53056.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parauberis NCFD 2020]
          Length = 729

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA + V       S  ++  ++ ++E+ +  +   
Sbjct: 10  PDIRVIKRDGRLVNFDTTKIYSALLKASVEVTKM----SPVLEAKLEAISERVIAEIRDR 65

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +   
Sbjct: 66  FPNN--IKIYEIQNIVEHELLAANEYAIAKEYINYRTQRDFARSQATDIN 113



 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
           ++      P ++++  DG L++F++ ++   + +A   +  +S           + V++E
Sbjct: 2   TQEKVLEQPDIRVIKRDGRLVNFDTTKIYSALLKASVEVTKMSPVLEAKLEAISERVIAE 61

Query: 185 TYKNMYDGLSESDLETAL 202
                 + +   +++  +
Sbjct: 62  IRDRFPNNIKIYEIQNIV 79


>gi|187735364|ref|YP_001877476.1| anaerobic ribonucleoside-triphosphate reductase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425416|gb|ACD04695.1| anaerobic ribonucleoside-triphosphate reductase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 698

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 14/101 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    +   KI  AI KAF      G + +  + + ++                 
Sbjct: 5   IIKRSGKKEQYQGYKIEEAIRKAF---HSSGTAYNRSIYEEVEA-----------KLSHQ 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
              H+E+IQD +E +L +SG+    + ++ YR      R  
Sbjct: 51  DSAHVEEIQDMIERALFRSGYFDTAKAFITYRFLHKMQREQ 91


>gi|78358056|ref|YP_389505.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220461|gb|ABB39810.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 685

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G + ++   +I+ AI K+         +  I+   + K L  +   +L       
Sbjct: 5   ILKRDGRLETWSTDRIAGAIFKSL-------KASGIKDPLLSKRLARKVEEKLN----DE 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                E +QD V+  LM++  + +   Y++YRE+R ++R+        + +   
Sbjct: 54  DTPEQERVQDMVQQVLMEARLYNVAERYIIYREKRREMRSQGQAYLDISQMIES 107


>gi|294790367|ref|ZP_06755525.1| anaerobic ribonucleoside-triphosphate reductase [Scardovia
           inopinata F0304]
 gi|294458264|gb|EFG26617.1| anaerobic ribonucleoside-triphosphate reductase [Scardovia
           inopinata F0304]
          Length = 798

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  V+V KR+G V  FD   I  AI  AF AV+ +     +R   +I+ +T++  + +  
Sbjct: 17  IDSVKVEKRDGRVVPFDSVNIIHAIEAAFKAVDEEVGPEEVR---LIEQMTQRVASSITG 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                  V I+DIQ  VE  L+    + I + Y  YR ++   RA  S            
Sbjct: 74  RY--NGPVRIDDIQSLVEHELVNEHLYDIAKAYTSYRLDKDIKRAKASDVNEAIK----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D +L+  N+ +
Sbjct: 127 KLVNKDESLVRENANK 142


>gi|160895081|ref|ZP_02075855.1| hypothetical protein CLOL250_02632 [Clostridium sp. L2-50]
 gi|156863512|gb|EDO56943.1| hypothetical protein CLOL250_02632 [Clostridium sp. L2-50]
          Length = 708

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 15/133 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G   S+D SKI  AI KA   VE        ++++II  +  +   R+L    
Sbjct: 1   MQVIKRDGRAVSYDRSKIIVAIQKANAEVEDCEKISEEKIEEIIDGIEAKNRKRML---- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +EDIQD +E  LM  G   + + Y++YR  R  +R A +   S   +     I 
Sbjct: 57  ------VEDIQDIIEQKLMAEGKFVLAKTYIIYRYSRELIRKANTTDDSILSL-----IK 105

Query: 149 MDDGTLISFNSKR 161
             +  ++  NS +
Sbjct: 106 NRNKDVMEENSNK 118


>gi|331270949|ref|YP_004385660.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
 gi|329127341|gb|AEB77285.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
          Length = 706

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+ ++I  AI  A    +              K L+      + + NK  
Sbjct: 5   VIKRDGREVDFNINRIVNAIELAMKDTKQGVD----------KELSVHIANDISKINKDK 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--IM 148
           +   +E+IQD VE  LM S    + +EY+ YR ER+  R ++S+          +K    
Sbjct: 55  MT--VEEIQDLVEDKLMDSK-KDVAKEYIKYRNERTKERDSKSNVFEKMQDTFDMKSEDN 111

Query: 149 MDDGTLISFNSKRLEMIVEE-ACSGL--QDVSSKIVLSETYKNMY 190
            D+        +    ++ + AC          + +L E  K +Y
Sbjct: 112 RDNANKAGDKLQTYRAMIADIACREFARTKTIPEKILREHKKTIY 156


>gi|294785007|ref|ZP_06750295.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_27]
 gi|294486721|gb|EFG34083.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_27]
          Length = 728

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 45/202 (22%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +              I  
Sbjct: 51  DKVLSVEQIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIREREKG------------IYK 98

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
             G L+  ++++L           ++ +         +++  G+S  D           L
Sbjct: 99  QIGELVDASNEKLLS---------ENANKDAKTISVQRDLLAGISSRDY---------YL 140

Query: 210 IEKEPNYAKVT---ARFLLEKL 228
            +  P + K+        L  L
Sbjct: 141 NKIVPEHIKLAHIKGEIHLHDL 162


>gi|146283826|ref|YP_001173979.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           stutzeri A1501]
 gi|145572031|gb|ABP81137.1| anaerobic class III ribonucleotide reductase [Pseudomonas stutzeri
           A1501]
 gi|327482155|gb|AEA85465.1| anaerobic ribonucleoside triphosphate reductase [Pseudomonas
           stutzeri DSM 4166]
          Length = 672

 Score = 91.1 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
               E  + V + KR+G + +F+ +KI         A+   GA+       + + L E  
Sbjct: 2   PRQAEVNQPVSLRKRDGRLAAFELAKIE-------RAIAAAGAATGEFDAAVAQALAEAV 54

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
             +L +       V +E +QD VE +LM +GH    R Y++YRE  + +R  +      A
Sbjct: 55  RLQLARR----TAVEVEQVQDAVERALMAAGHFDTARAYIVYRERHARLRRDRKAVVDVA 110

Query: 140 PIAPK 144
               +
Sbjct: 111 ASMNE 115


>gi|315924356|ref|ZP_07920578.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622235|gb|EFV02194.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 725

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            VIKRNG    F+  KI  AI KA   V+      + ++Q +  N+ +Q           
Sbjct: 3   NVIKRNGEEVLFNIDKIVNAITKANAEVKPIRQLNAAQIQAVADNVEKQISAY------- 55

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                +EDIQD VE  +M+   +++ + Y+ YR++R+ +R
Sbjct: 56  QHAAGVEDIQDLVETGIMEMRGYEVAQAYMHYRDKRTALR 95


>gi|281357522|ref|ZP_06244010.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
 gi|281316125|gb|EFB00151.1| anaerobic ribonucleoside-triphosphate reductase [Victivallis
           vadensis ATCC BAA-548]
          Length = 720

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++++KR+G    F  +KI  A+ KA   VE K A  + +++ I + ++      L +   
Sbjct: 1   MKIVKRSGAEEEFSVAKILAAVTKANQTVEFKNALTAQQIEAIGEYVSG-ICKALDR--- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
               + +E+IQD VE  +MQ G  ++ ++Y+ YR  R+ +R A +       +  
Sbjct: 57  ---ALSVEEIQDIVETRIMQEGAFEVAKKYITYRYVRNLIRQANTTDNQILSLIE 108


>gi|94995281|ref|YP_603379.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|94548789|gb|ABF38835.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
          Length = 732

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|306826483|ref|ZP_07459794.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus pyogenes ATCC 10782]
 gi|304431342|gb|EFM34340.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus pyogenes ATCC 10782]
          Length = 732

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEGKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|288916312|ref|ZP_06410691.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
 gi|288352291|gb|EFC86489.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Frankia sp. EUN1f]
          Length = 701

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 200/648 (30%), Gaps = 104/648 (16%)

Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320
           E   +A  +H  +  F ++     LK          G Q L++ +         E     
Sbjct: 55  EIRQEADRIHSLIYTFKILPAGRHLKMS-----GVPGRQYLFNCHVSGWVSDLAEHFVFT 109

Query: 321 FMRVAMG--LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL----- 373
           ++R+A G  +    + +        + +            +        LS+ F      
Sbjct: 110 YLRLAEGGGVGANYSSRFTCRYSIVSPVEVHVVCNDAHPDYAELRDGGLLSTVFTADAVA 169

Query: 374 -TTVPDDLYGIFGALQENAMLAKYS--------GGLGNDWTPVRGLGAHIHGTNGKSQGV 424
              V D   G   AL      A+ +        G +  D + +R  GA I    G + G 
Sbjct: 170 DVDVEDSREGWADALALVLRRAELNHHLAGGQAGPIVVDVSRIRFRGAPIKAFGGTASGP 229

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
            P  ++   TA  ++            L+    ++++ +     +G+ RR          
Sbjct: 230 APLARMLLRTAEILSGCAVEGFGAIEPLDAM--EIDQAIAECVVSGNVRRSARMSIVHWQ 287

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544
            P +      ++     ++ +   ++ D +              A   +    R+I A+A
Sbjct: 288 DPHIREFIACKSDPGAHWTTNISVEIDDDF-------------VAAVNDDFHPRRIEAMA 334

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604
           +  +++T +   G P +         S    VG V ++N C EI L +       CNLG 
Sbjct: 335 VLEQVVTGMLTNGEPGLWNSSL----SAHGEVGEVIATNPCGEIALEA----WENCNLGH 386

Query: 605 INLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
           +NL A       +D+       R   R L         T +   +    +R IG+G  G 
Sbjct: 387 VNLDAFVDKQGFYDHAACLEAHRLMTRFL-IRATFGDITSKAQAEVVARNRRIGVGHFGA 445

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
           Q  L    I Y                           ++    Y +       Q     
Sbjct: 446 QGWLVKRGIRY---------------------------SKSWQDYPTRHFLRAMQDTVRA 478

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
           ++      +R    +                        C  +APT T+A + G S+   
Sbjct: 479 EAREYAFALRIPEPVK-----------------------CTTVAPTGTVAKLPGRSEGWH 515

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-- 841
           P Y   +V+    G      +  V  L       E  I   +    SI   + +  ++  
Sbjct: 516 PIYAREFVRRIRYGLDDPREAAEVEALHDAGHTVEPCIYSPRTLVVSIPTRDPLVAEVIA 575

Query: 842 ----KKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNLYLDEPSGKK 884
                 I   A EI    ++   +  Q+ + D A S  + + EP  ++
Sbjct: 576 AGGDPSIVEAANEISLHDMLSVQAMVQECFADNAVSFTVNV-EPDREQ 622


>gi|116493703|ref|YP_805437.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           casei ATCC 334]
 gi|116103853|gb|ABJ68995.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           casei ATCC 334]
          Length = 727

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           Q+ KR+G + +FD SKIS AI KA  +V    A  +      I +LT+    ++      
Sbjct: 7   QIKKRDGRIVNFDASKISTAITKAAESV----AKLAPSDVLTIDHLTDTVTAKIRDRYHD 62

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V I +IQ  VE +L+ +  +     Y  YR +R   R  +     +       +++ 
Sbjct: 63  D--VEIAEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVS-----RLVN 115

Query: 150 DDGTLISFNSKRLEMIVE 167
            D ++++ N+ +   +  
Sbjct: 116 RDESVVNENANKDSRVFS 133



 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL----------SETYKNMYDGLSE 195
           +I   DG +++F++ ++   + +A   +  ++   VL          ++     +D +  
Sbjct: 7   QIKKRDGRIVNFDASKISTAITKAAESVAKLAPSDVLTIDHLTDTVTAKIRDRYHDDVEI 66

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           ++++T +  +     +     A    R   +  R++     Y   +     E
Sbjct: 67  AEIQTVVEQTLIAAEKYNWAEAYTEYRLKRDLARKQKQDVNYNVSRLVNRDE 118


>gi|15675860|ref|NP_270034.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes M1 GAS]
 gi|19746977|ref|NP_608113.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS8232]
 gi|50915138|ref|YP_061110.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|56808133|ref|ZP_00365919.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M49 591]
 gi|139474550|ref|YP_001129266.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes str. Manfredo]
 gi|209560220|ref|YP_002286692.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes NZ131]
 gi|13623093|gb|AAK34755.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M1 GAS]
 gi|19749231|gb|AAL98612.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes MGAS8232]
 gi|50904212|gb|AAT87927.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|134272797|emb|CAM31074.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes str. Manfredo]
 gi|209541421|gb|ACI61997.1| Ribonucleotide reductase of class III (anaerobic), large subunit
           [Streptococcus pyogenes NZ131]
          Length = 732

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|322831246|ref|YP_004211273.1| anaerobic ribonucleoside-triphosphate reductase [Rahnella sp.
           Y9602]
 gi|321166447|gb|ADW72146.1| anaerobic ribonucleoside-triphosphate reductase [Rahnella sp.
           Y9602]
          Length = 727

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 20  YPFPEKIKGVQ--VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
              P K   +Q  VIKR+G    FD   I +A+ +A         +  I   D    +  
Sbjct: 7   ETVPAKSTKMQPIVIKRDGCQVPFDEVLIKQAVQRA-------AEAAGIDSVDYCAQVAR 59

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
                L         V I +IQD VE  LM   H K+ R Y+ YR +R   R  +     
Sbjct: 60  IVAENLQ----DQARVDIHEIQDAVENQLMAGPHKKLARAYIEYRHDRDVKREMRGRLNQ 115

Query: 138 D 138
           +
Sbjct: 116 E 116


>gi|188996398|ref|YP_001930649.1| anaerobic ribonucleoside-triphosphate reductase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931465|gb|ACD66095.1| anaerobic ribonucleoside-triphosphate reductase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 703

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 14/102 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    F P KI  AI KAF +V                   E     +L   K
Sbjct: 1   MFIIKRDGLAQEFMPYKIKDAIEKAFKSVNQTFD--------------EIIYNNVLTTLK 46

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              +  +E+IQD +E  L ++G+ ++ R ++LYR  R   R 
Sbjct: 47  QKDVWTVEEIQDLIEKELFRAGYFEVMRSFMLYRHTRKLQRE 88


>gi|94991370|ref|YP_599470.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94544878|gb|ABF34926.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
          Length = 732

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|71911606|ref|YP_283156.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|71854388|gb|AAZ52411.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
          Length = 732

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|71904439|ref|YP_281242.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71803534|gb|AAX72887.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
          Length = 732

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYAIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|171778524|ref|ZP_02919651.1| hypothetical protein STRINF_00503 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282747|gb|EDT48171.1| hypothetical protein STRINF_00503 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 741

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA           S  V+  ++ +++  +  +   
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKA----SNNVTKMSPVVEAKLEAISDNIIAEIFDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
            K    V I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FKDN--VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQATDINFTID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LLKKDQTVVNENANK 136



 Score = 45.2 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K      P +K++  DG  ++F++ ++   + +A + +  +S             +++E
Sbjct: 5   EKETIATQPAVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
            +    D +   +++  +
Sbjct: 65  IFDRFKDNVKIYEIQNIV 82


>gi|291522895|emb|CBK81188.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus catus
           GD/7]
          Length = 708

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 10/103 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G   +++ SKI  AI KA   V  +    +  +++I+       V    +   
Sbjct: 1   MIVIKRDGQEVNYNRSKIIVAIGKANEEVPEEERISNQEIEEIVSY-----VETRKRKR- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               + +EDIQD +E  LM  G   + + Y++YR  R  VR A
Sbjct: 55  ----ILVEDIQDIIEQKLMALGKFDLAKRYIVYRYTRELVRRA 93


>gi|29566069|ref|NP_817639.1| gp50 [Mycobacterium phage Bxz2]
 gi|34925222|sp|Q857H2|VG50_BPMB2 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|29424794|gb|AAN01804.1| gp50 [Mycobacterium phage Bxz2]
          Length = 672

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 102/688 (14%), Positives = 190/688 (27%), Gaps = 132/688 (19%)

Query: 299 QILYDRYFLHINGSRIEMPQAFFMR------VAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           Q L++ +         +  +  FMR      V    + +  +      E Y  +      
Sbjct: 81  QHLFNCWVSGWTEKPSDHFEFTFMRLMEGGGVGANYSNRFIDYGPVQQELYVHIVCDPDH 140

Query: 353 CSTPTLFNSGTRHPQL----SSCFLTTVPDDLYGIFGALQENAMLAK----YSGGLGNDW 404
                +  +G    +     +  F+    D   G   AL +                 D 
Sbjct: 141 PDYEAMKEAGVLSTEYDPDWAGAFVIE--DSREGWAAALVDLIDTHYRDEVSHFQRVYDV 198

Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
           + VR  GA +    G + G +P  ++  D    +++     G +         +++  + 
Sbjct: 199 SRVRQFGAKLKTFGGTASGPLPLARMLIDVCEILSEIATEGGQLTGIAAM---EIDHAIA 255

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
                G  RR               M        +      + +  H       E+  E 
Sbjct: 256 QCVVAGGVRRSARM----------SMMHWKDPQVYEFLRIKQDTGSHWTTNISLEVDDEF 305

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
           +    +              + R++   +   G P        N+  P      V  +N 
Sbjct: 306 WVAVEEGWAG------PNNRILRELTEGMVANGEPGFWNSSLSNVGEPN----EVVCTNP 355

Query: 585 CTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           C EITL         CNLG +NL A    N  +D   L    R   R L      +    
Sbjct: 356 CGEITLEP----WEPCNLGHVNLAAFAHGNGSYDITGLYRAHRLVTRFLM-RATFSPVAD 410

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            K+++    +R IG+G +G  S L L    Y+     E     +  ++     A+ + A 
Sbjct: 411 PKSREVLDRNRRIGVGHLGVASFLALCGWKYSEARTNEEFKWLLRSLAEEVDHAATQFAH 470

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           +                     I +  + R                              
Sbjct: 471 QLR-------------------IPVPVKKR------------------------------ 481

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
             +APT TIA + GVS+ I P +   +++       ++ +      L         +  D
Sbjct: 482 -TVAPTGTIAKMPGVSEGIHPIFSRYFIRRVR---LSMSDPDQTRMLADYGRQGYEVEDD 537

Query: 824 L-KYHDG--SIGNIERIPDDLKKIH--------ATAFEIDPMWLIESASRRQK-WIDQAQ 871
           L     G  SI   + +  ++ + +         +A ++    L+   +  Q  W D A 
Sbjct: 538 LYAKFTGVVSIPTQDTLVAEVIEHYGQDSESLVESAADLSLNELLGFQALYQTIWADNAV 597

Query: 872 SLNLYL--DEPSGKKLDFIYRQAWLMG--LKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927
           S    +  +  +   +    R     G  LK                             
Sbjct: 598 SFTANVDPETYNADDVRQQLRL---FGGLLKGATIF-------------PEASMPQAPYE 641

Query: 928 VTDPNSSTHSLGIPSSCTSDTECE--VC 953
                    +     +   D +C    C
Sbjct: 642 RITKEQYEQATAKAVADGVDEDCANGAC 669


>gi|227871727|ref|ZP_03990136.1| possible ribonucleoside-triphosphate reductase [Oribacterium sinus
           F0268]
 gi|227842436|gb|EEJ52657.1| possible ribonucleoside-triphosphate reductase [Oribacterium sinus
           F0268]
          Length = 738

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            VIKRNG    FD  KI  A+ KA   V         ++Q   + + ++          S
Sbjct: 17  NVIKRNGKEVKFDIYKIIHAMEKANKEVAPVYQMNEYQIQAAAETVAKKI-------QAS 69

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           +  V++EDIQD VE ++M+   +++ ++YV YR +R   R A S  +    +  +  
Sbjct: 70  SHAVNVEDIQDMVETAIMEMRAYEVAQKYVRYRYKREMARKANSTDEDILALIDQAN 126


>gi|157368772|ref|YP_001476761.1| anaerobic ribonucleoside triphosphate reductase [Serratia
           proteamaculans 568]
 gi|157320536|gb|ABV39633.1| anaerobic ribonucleoside-triphosphate reductase [Serratia
           proteamaculans 568]
          Length = 712

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I +AI +A +AV    A     V  ++                  
Sbjct: 5   VIKRDGCQVPFDEARIGQAIERAALAVGIVNADYCATVARVVAQ-----------RMSQQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  QRVDIHEIQQAVENQLMAGEYKQLARAYIEYRHDRDVARELRGRLNQE 101


>gi|160881178|ref|YP_001560146.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           phytofermentans ISDg]
 gi|160429844|gb|ABX43407.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           phytofermentans ISDg]
          Length = 708

 Score = 90.7 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G VT +D +KI  AI KA      +   +    +D I+ +             
Sbjct: 1   MKVVKRDGRVTDYDRNKILVAIRKA----NDEVDPKEKITEDKIEAIILGIEHLKKDTMY 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E+IQD +E  LM      + + Y++YR  R  VR A   + +D  I   ++  
Sbjct: 57  ------VEEIQDMIEQKLMAERKFVLAKTYIIYRFRRELVRKA---NTTDESIMSLIRHS 107

Query: 149 MDDGTLISFNSKRLEMIVEE 168
            +D    + N   +    + 
Sbjct: 108 NEDVMEENSNKNAVIASTQR 127



 Score = 41.8 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-VLSETYKNMYDGLSESDLETALI 203
           +K++  DG +  ++  ++ + + +A     +V  K  +  +  + +  G+     +T  +
Sbjct: 1   MKVVKRDGRVTDYDRNKILVAIRKAN---DEVDPKEKITEDKIEAIILGIEHLKKDTMYV 57

Query: 204 FSSRTLIEKEPNYA---KVTARFLLEKLRREV 232
              + +IE++        +   +++ + RRE+
Sbjct: 58  EEIQDMIEQKLMAERKFVLAKTYIIYRFRREL 89


>gi|118474565|ref|YP_891231.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413791|gb|ABK82211.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 689

 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 16/102 (15%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G +  F   KI  AI KA+ +   +  +           L ++ ++ +     
Sbjct: 1   MKIIKRDGSLQDFASYKIENAITKAYKSALKEPNTA----------LIKKVLSEVKDKM- 49

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                 +E+IQD +E +L  SG   + R ++LYR   +  R 
Sbjct: 50  -----SVEEIQDIIEKALFDSGDFTVMRNFMLYRHTHTMQRD 86



 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 29/61 (47%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +KI+  DG+L  F S ++E  + +A        +  ++ +    + D +S  +++  +  
Sbjct: 1   MKIIKRDGSLQDFASYKIENAITKAYKSALKEPNTALIKKVLSEVKDKMSVEEIQDIIEK 60

Query: 205 S 205
           +
Sbjct: 61  A 61


>gi|315645811|ref|ZP_07898932.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus
           vortex V453]
 gi|315278572|gb|EFU41886.1| anaerobic ribonucleoside-triphosphate reductase [Paenibacillus
           vortex V453]
          Length = 742

 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 21/184 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G + +F+ S+I +A+ KAF+AVEG             +    +   R      
Sbjct: 1   MKVMKRDGCLVNFEMSRIVKAVDKAFIAVEGASR----------EQAALEIGVRAAHIAA 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               V +E+IQD V   L  SG+ ++   Y  YRE R   R  +            + + 
Sbjct: 51  GMDQVTVEEIQDIVVEHLQSSGYTEVAAAYQQYREIRDLERVRRGEL--YKISRDVIGVA 108

Query: 149 MDDGTLISFNSK------RLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETA 201
             D    + N        ++  I  E    +   S  ++ +E  + + DG +   DL+  
Sbjct: 109 NLDLLRENANLNGDSFSGKMSRIGSEYAKWMA--SHFVLPAELMRAVKDGYVYVHDLDQY 166

Query: 202 LIFS 205
            + +
Sbjct: 167 ALGT 170


>gi|225026315|ref|ZP_03715507.1| hypothetical protein EUBHAL_00556 [Eubacterium hallii DSM 3353]
 gi|224956325|gb|EEG37534.1| hypothetical protein EUBHAL_00556 [Eubacterium hallii DSM 3353]
          Length = 720

 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G    FD SKI  A+ +A  +V         +V+ I +N     V  + +   
Sbjct: 1   MKIIKRSGMEVEFDRSKIIAAVKRANNSVVEGEKVSDEQVEKIAEN-----VETICEGM- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-- 146
               +++E+IQD VE  +M     ++   Y+ YR +R+ VR + S  K    +       
Sbjct: 55  -NRALNVEEIQDLVENQIMNQKAFRLASNYITYRYKRALVRKSNSTDKQILSLLECNNEE 113

Query: 147 IMMDDGTLIS 156
           ++ ++     
Sbjct: 114 VIQENSNKNP 123


>gi|315280721|ref|ZP_07869539.1| anaerobic ribonucleoside-triphosphate reductase [Listeria marthii
           FSL S4-120]
 gi|313615632|gb|EFR88959.1| anaerobic ribonucleoside-triphosphate reductase [Listeria marthii
           FSL S4-120]
          Length = 603

 Score = 90.3 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 16/138 (11%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E++   +VIKR+G   +FD  KI  A+  +  A+       S+  +  ++ +  + V+ L
Sbjct: 4   EQLNEQKVIKRDGRKANFDLIKIRNAVEASMKAI-------SLEDETFLEEILLEVVSEL 56

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                +   + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +          
Sbjct: 57  ----PNKTDMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE--- 109

Query: 144 KLKIMMDDGTLISFNSKR 161
             K++  D T+++ N+ +
Sbjct: 110 --KLLQKDKTVVNENANK 125



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               + K++  DG   +F+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQKVIKRDGRKANFDLIKIRNAVEASMKAISLEDETFLEEILLEVVSELPNKTDMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|266625307|ref|ZP_06118242.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
 gi|288862793|gb|EFC95091.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           hathewayi DSM 13479]
          Length = 424

 Score = 90.3 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 70/165 (42%), Gaps = 23/165 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G + ++D  KI RAI KA   V+    +         + L +  +  + +  +
Sbjct: 2   IKVQKRDGRIVNYDREKIVRAIQKANAEVDAAERAG--------EALIDGILDDVERECE 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              +VH+E IQD +E  L++   + ++++Y++YR +R+ +R A             +  +
Sbjct: 54  D--VVHVESIQDMIESRLVKQNKYTLSKKYMIYRYQRALLRKA-------NTTDESILKL 104

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
           + +           +  +      L       +  E  +++   +
Sbjct: 105 IRNENKELAEENSNKNTI------LASTQRDYIAGEVSRDLTKRM 143


>gi|298252649|ref|ZP_06976443.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 5-1]
 gi|297533013|gb|EFH71897.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 5-1]
          Length = 805

 Score = 90.3 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M   ++      +         P  +  VQV KR+G V  FDP  I  AI  AF   +  
Sbjct: 1   MQVLEETAVTSAENCTDDVVEIP--VSRVQVEKRDGRVVDFDPLNIIMAIKAAF---KDL 55

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
           G     + + +I+N+++     +           IEDIQ  VE SL+++  +++ R Y  
Sbjct: 56  GKEVGPQEEQLIRNISDHIEAEIQDRY--NGPAKIEDIQTLVEHSLIENHLYEVARCYTS 113

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKR 161
           YR  R   RA  +            +++  D +L+  N+ +
Sbjct: 114 YRLNRDIDRAKATDINEAVN-----RLVNRDESLVRENANK 149


>gi|311114309|ref|YP_003985530.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Gardnerella vaginalis ATCC 14019]
 gi|310945803|gb|ADP38507.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Gardnerella vaginalis ATCC 14019]
          Length = 817

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           VQV KR+G V  FD   I  AI  AF  +  +   +    + +I+++T+     +     
Sbjct: 39  VQVEKRDGRVVDFDQMNIIMAIKAAFKDLRKEVGPQE---EQMIRDITDHIEAEIQDRY- 94

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 IEDIQ  VE  L+++  +++ R Y  YR  R   RA  +            +++
Sbjct: 95  -NGPAKIEDIQTLVEHGLIENHLYEVARCYTSYRLNRDIDRAKATDINEAVN-----RLV 148

Query: 149 MDDGTLISFNSKR 161
             D +L+  N+ +
Sbjct: 149 NRDESLVRENANK 161


>gi|306822273|ref|ZP_07455654.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Bifidobacterium dentium ATCC 27679]
 gi|309802805|ref|ZP_07696907.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304554435|gb|EFM42341.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Bifidobacterium dentium ATCC 27679]
 gi|308220558|gb|EFO76868.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 799

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                  + V V KR+G V  FDP  I  A+  AF  ++ K   +    + +I+ +  Q 
Sbjct: 11  ATSATTAEKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQMIRGIANQV 67

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              + +         IEDIQ+ VE  L++   + + R Y  YR  +   RA  +      
Sbjct: 68  EAEIKERY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDINEAV 125

Query: 140 PIAPKLKIMMDDGTLISFNSKR 161
                 +++  D +L+  N+ +
Sbjct: 126 S-----RLVNRDESLVRENANK 142


>gi|21911330|ref|NP_665598.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS315]
 gi|28896704|ref|NP_803054.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes SSI-1]
 gi|21905545|gb|AAM80401.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes MGAS315]
 gi|28811958|dbj|BAC64887.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes SSI-1]
          Length = 732

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYTIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|171742360|ref|ZP_02918167.1| hypothetical protein BIFDEN_01471 [Bifidobacterium dentium ATCC
           27678]
 gi|283456546|ref|YP_003361110.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           dentium Bd1]
 gi|171277974|gb|EDT45635.1| hypothetical protein BIFDEN_01471 [Bifidobacterium dentium ATCC
           27678]
 gi|283103180|gb|ADB10286.1| nrdD Anaerobic ribonucleoside-triphosphate reductase
           [Bifidobacterium dentium Bd1]
          Length = 799

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                  + V V KR+G V  FDP  I  A+  AF  ++ K   +    + +I+ +  Q 
Sbjct: 11  ATSATTAEKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQMIRGIANQV 67

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              + +         IEDIQ+ VE  L++   + + R Y  YR  +   RA  +      
Sbjct: 68  EAEIKERY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDINEAV 125

Query: 140 PIAPKLKIMMDDGTLISFNSKR 161
                 +++  D +L+  N+ +
Sbjct: 126 S-----RLVNRDESLVRENANK 142


>gi|183602101|ref|ZP_02963469.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683013|ref|YP_002469396.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191333|ref|YP_002968727.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196739|ref|YP_002970294.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218594|gb|EDT89237.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620663|gb|ACL28820.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249725|gb|ACS46665.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251293|gb|ACS48232.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295794326|gb|ADG33861.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 808

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  FDP  I  A+  AF  ++ +   +  R   +I ++  Q    + +     
Sbjct: 32  VEKRDGRVVDFDPVNIVVAVKSAFADLDKEVGPQEER---MILDIANQIEGEIRERY--N 86

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               IEDIQ+ VE +L++   +++ R Y  YR  +   RA  +            +++  
Sbjct: 87  GPAKIEDIQNLVEHALIEDHLYEVARTYTNYRLNKDIQRAKATDINEAVS-----RLVNR 141

Query: 151 DGTLISFNSKR 161
           D +L+  N+ +
Sbjct: 142 DESLVRENANK 152


>gi|323692294|ref|ZP_08106533.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323503619|gb|EGB19442.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 725

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ +A   V+        ++  I        V  +     
Sbjct: 1   MKIIKRNGSEAVFDISKIMMAVSRANEVVQANQKLSKAQINAIAAQ-----VEEVCSTRP 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +++E+IQD VE  +M+    ++ R+Y+ YR  R+  R
Sbjct: 56  --HAMNVEEIQDLVENQIMEQQAFEVARKYITYRYIRTLKR 94


>gi|283783570|ref|YP_003374324.1| anaerobic ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 409-05]
 gi|283441058|gb|ADB13524.1| anaerobic ribonucleoside-triphosphate reductase [Gardnerella
           vaginalis 409-05]
          Length = 805

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M   ++      +         P  +  VQV KR+G V  FDP  I  AI  AF  +  +
Sbjct: 1   MQVLEETAVTSAENCTDDVVEVP--VSRVQVEKRDGRVVDFDPLNIIMAIKAAFKDLGKE 58

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
              +    + +I+N+++     +           IEDIQ  VE SL+++  +++ R Y  
Sbjct: 59  IGPQE---EQLIRNISDHIEAEIQDRY--NGPAKIEDIQTLVEHSLIENHLYEVARCYTS 113

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKR 161
           YR  R   RA  +            +++  D +L+  N+ +
Sbjct: 114 YRLNRDIDRARATDINEAVN-----RLVNRDESLVRENANK 149


>gi|94989434|ref|YP_597535.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94993323|ref|YP_601422.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94542942|gb|ABF32991.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94546831|gb|ABF36878.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
          Length = 732

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD +KI  A++KA M V       S  V+  ++ ++++ +  +++ 
Sbjct: 13  PDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRM----SPLVEAKLEAISDRIIAEIIER 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ+ VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FPTN--IKIYEIQNIVEHKLLAANEYTIAKEYINYRTQRDFARSQATDINFSID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG L++F+S ++   + +A   +  +S             +++E
Sbjct: 5   EEDKVTVQPDIKVIKRDGRLVNFDSTKIYSALLKASMKVTRMSPLVEAKLEAISDRIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
             +     +   +++  +
Sbjct: 65  IIERFPTNIKIYEIQNIV 82


>gi|289177458|gb|ADC84704.1| Anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 824

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  FDP  I  A+  AF  ++ +   +  R   +I ++  Q    + +     
Sbjct: 48  VEKRDGRVVDFDPVNIVVAVKSAFADLDKEVGPQEER---MILDIANQIEGEIRERY--N 102

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               IEDIQ+ VE +L++   +++ R Y  YR  +   RA  +            +++  
Sbjct: 103 GPAKIEDIQNLVEHALIEDHLYEVARTYTNYRLNKDIQRAKATDINEAVS-----RLVNR 157

Query: 151 DGTLISFNSKR 161
           D +L+  N+ +
Sbjct: 158 DESLVRENANK 168


>gi|323487570|ref|ZP_08092861.1| hypothetical protein HMPREF9474_04612 [Clostridium symbiosum
           WAL-14163]
 gi|323399108|gb|EGA91515.1| hypothetical protein HMPREF9474_04612 [Clostridium symbiosum
           WAL-14163]
          Length = 725

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ +A   V+        ++  I        V  +     
Sbjct: 1   MKIIKRNGSEAVFDISKIMMAVSRANEVVQANQKLSKAQINAIAAQ-----VEEVCSTRP 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               +++E+IQD VE  +M+    ++ R+Y+ YR  R+  R
Sbjct: 56  --HAMNVEEIQDLVENQIMEQQAFEVARKYITYRYIRTLKR 94


>gi|330822767|ref|YP_004386070.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans K601]
 gi|329308139|gb|AEB82554.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans K601]
          Length = 676

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
            P P       VI+RNG   +FD  +I  AI +A       G++      D  + LT Q 
Sbjct: 4   PPAPVATLPRDVIQRNGERAAFDAERIRSAIARA-------GSATGDFGADEAQLLTAQA 56

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              L+   +      IE IQD VE +L+ + H +  R Y+ +R+  + +RA +       
Sbjct: 57  TKVLIHRFR-GEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHALLRADRQTLVHVE 115

Query: 140 PIAPK 144
               +
Sbjct: 116 SSINE 120


>gi|319760862|ref|YP_004124799.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans BC]
 gi|317115423|gb|ADU97911.1| anaerobic ribonucleoside-triphosphate reductase [Alicycliphilus
           denitrificans BC]
          Length = 676

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
            P P       VI+RNG   +FD  +I  AI +A       G++      D  + LT Q 
Sbjct: 4   PPAPVATLPRDVIQRNGERAAFDAERIRSAIARA-------GSATGDFGADEAQLLTAQA 56

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
              L+   +      IE IQD VE +L+ + H +  R Y+ +R+  + +RA +       
Sbjct: 57  TKVLIHRFR-GEAPAIEQIQDVVEQTLIAANHLQTARAYMAHRQRHALLRADRQTLVHVE 115

Query: 140 PIAPK 144
               +
Sbjct: 116 SSINE 120


>gi|332290045|ref|YP_004420897.1| anaerobic ribonucleoside triphosphate reductase [Gallibacterium
           anatis UMN179]
 gi|330432941|gb|AEC18000.1| anaerobic ribonucleoside triphosphate reductase [Gallibacterium
           anatis UMN179]
          Length = 726

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD   I  A+ KA  AV        I      + L+++    +L      
Sbjct: 24  VIKRDGSKAQFDAQFILNAMKKAAQAVN-------IEDDGYFEQLSQEISFEILNGV--N 74

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I DIQ  VE  LMQS + ++ R Y+ YR +R   R  +S    +  
Sbjct: 75  QQIDIADIQQVVENHLMQSRYPQVARAYIEYRHDRDKEREKRSQLTQEIE 124


>gi|16272049|ref|NP_438248.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae Rd KW20]
 gi|260580621|ref|ZP_05848448.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae RdAW]
 gi|1171762|sp|P43752|NRDD_HAEIN RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|1573024|gb|AAC21751.1| anaerobic ribonucleoside-triphosphate reductase (nrdD) [Haemophilus
           influenzae Rd KW20]
 gi|260092683|gb|EEW76619.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae RdAW]
          Length = 707

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|145639636|ref|ZP_01795239.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittII]
 gi|145271193|gb|EDK11107.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittII]
 gi|309750606|gb|ADO80590.1| Anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Haemophilus influenzae R2866]
          Length = 707

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|117620502|ref|YP_855772.1| anaerobic ribonucleoside triphosphate reductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561909|gb|ABK38857.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 705

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     +           L E+    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVGRAAEAVNQASPA-----------LAERIAAAVTQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+     +
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARGRLAQE 101


>gi|224282538|ref|ZP_03645860.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310286999|ref|YP_003938257.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           bifidum S17]
 gi|311063874|ref|YP_003970599.1| anaerobic ribonucleoside-triphosphate reductase NrdD
           [Bifidobacterium bifidum PRL2010]
 gi|313139692|ref|ZP_07801885.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|309250935|gb|ADO52683.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           bifidum S17]
 gi|310866193|gb|ADP35562.1| NrdD Anaerobic ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum PRL2010]
 gi|313132202|gb|EFR49819.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 794

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 22  FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
                  V V KR+G V  FDP  I  A+  AF  ++ +        + +I+   +Q   
Sbjct: 9   STATSSKVLVEKRDGRVVDFDPINIISAVKSAFADLDKQVGPEE---EKLIRGFADQIEG 65

Query: 82  RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            + +         IEDIQ+ VE +L+ +  + + R Y  YR ++   RA  +     
Sbjct: 66  EITERY--NGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEA 120


>gi|46190969|ref|ZP_00120770.2| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium longum DJO10A]
 gi|189440791|ref|YP_001955872.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum DJO10A]
 gi|189429226|gb|ACD99374.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Bifidobacterium longum DJO10A]
          Length = 802

 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
                 K   V V KR+G V  FDP  I  A+  AF                +I+    Q
Sbjct: 14  ETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAF---GDLNKEVGPEEDAMIRGFANQ 70

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               + +    A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA  +     
Sbjct: 71  VEGEIKERY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAKATDVNEA 128


>gi|306834528|ref|ZP_07467641.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus bovis ATCC 700338]
 gi|304423330|gb|EFM26483.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus bovis ATCC 700338]
          Length = 738

 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA + V       S  V+  ++ +++  +  +   
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKASINVTKM----SPVVEAKLETISDNIIAEIFDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            K    V I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FKDN--VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQATDIN 116



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K      P +K++  DG  ++F++ ++   + +A   +  +S             +++E
Sbjct: 5   EKETIATQPAVKVIKRDGRSVNFDADKIYNALVKASINVTKMSPVVEAKLETISDNIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
            +    D +   +++  +
Sbjct: 65  IFDRFKDNVKIYEIQNIV 82


>gi|46581351|ref|YP_012159.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120601471|ref|YP_965871.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|46450773|gb|AAS97419.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561700|gb|ABM27444.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris DP4]
 gi|311235010|gb|ADP87864.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris RCH1]
          Length = 689

 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G V ++   +++ AI KA  A   K      R+   ++   E            
Sbjct: 4   KILKRDGRVETWSVDRVAHAINKALKASGIKDPLLGKRLASRVEAKLEDVDA------PE 57

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                 E +QD V+  LM++  + +   Y++YRE+R ++R         A +   
Sbjct: 58  Q-----EHVQDMVQRVLMEARLYAVAERYIIYREKRREMRNQNQAYLDIARMIES 107


>gi|213691512|ref|YP_002322098.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213522973|gb|ACJ51720.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320457589|dbj|BAJ68210.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 802

 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           E+           K   V V KR+G V  FDP  I  A+  AF                +
Sbjct: 7   EEIVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAF---GDLNKEVGPEEDAM 63

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           I+    Q    +      A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA 
Sbjct: 64  IRGFANQVEGEIKGRY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAK 121

Query: 132 QSHSKSD 138
            +     
Sbjct: 122 ATDVNEA 128


>gi|296454674|ref|YP_003661817.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296184105|gb|ADH00987.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 802

 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           E+           K   V V KR+G V  FDP  I  A+  AF                +
Sbjct: 7   EEIVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAF---GDLNKEVGPEEDAM 63

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           I+    Q    +      A    IEDIQ+ VE +L+ +  + + R Y  YR ++   RA 
Sbjct: 64  IRGFANQVEGEIKGRY--AGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAK 121

Query: 132 QSHSKSD 138
            +     
Sbjct: 122 ATDVNEA 128


>gi|301155917|emb|CBW15387.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           parainfluenzae T3T1]
          Length = 708

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I+ AI KA  AV        I  +  I +L+++  T +  H    
Sbjct: 6   VIKRDGSRIGFDLQRITNAIRKAASAVN-------IVDEMYIHDLSQRINTEIFSHY--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  HEIDINQIQKIVEDHLMTSKYPQIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|218886568|ref|YP_002435889.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757522|gb|ACL08421.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 704

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G V ++   ++  AI KA  A   K      R+   ++   +             
Sbjct: 5   IRKRDGRVETWSVDRVGHAINKALKASGIKDPLLGKRLAQRVEAKLDGVD------MPEQ 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                E +QD V+  LM++  + +   Y++YRE+R ++R+        A +   
Sbjct: 59  -----EQVQDLVQRVLMEARLYAVAERYIIYREKRREMRSQNEAYLDVARMIES 107


>gi|157164943|ref|YP_001467813.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           concisus 13826]
 gi|112801754|gb|EAT99098.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           concisus 13826]
          Length = 700

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 13/109 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G    F   KI  AI KAF +                + +    V  + Q + +
Sbjct: 3   EILKRDGTRQEFVAYKIVDAIKKAFASENKAYD----------EQVFTNVVQDIFQKSSA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              + +EDIQD +E  L   GH ++ + ++LYR      R        D
Sbjct: 53  ---ITVEDIQDAIEKELFDGGHFEVLKSFMLYRHTHKLQREQILGLNED 98


>gi|291461042|ref|ZP_06026597.2| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379291|gb|EFE86809.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 731

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 45/202 (22%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  F   +I  AI K F+       +       +I+ +  Q           
Sbjct: 6   RVIKRDGSVVEFSKDRIINAISKTFI------QASREPNMKLIEKIATQVEEL------P 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             ++ +E+IQD V   LM S    I   Y  YR  ++++R  +              I  
Sbjct: 54  GKVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIRDREKG------------IYK 101

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209
             G L+  ++++L           ++ +         +++  G+S  D           L
Sbjct: 102 QIGELVDASNEKLLS---------ENANKDAKTISVQRDLLAGISSRDY---------YL 143

Query: 210 IEKEPNYAKVT---ARFLLEKL 228
            +  P + K+        L  L
Sbjct: 144 NKIVPEHIKLAHIKGEIHLHDL 165


>gi|330448570|ref|ZP_08312218.1| anaerobic ribonucleoside-triphosphate reductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492761|dbj|GAA06715.1| anaerobic ribonucleoside-triphosphate reductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 708

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M         GA++SI   ++ +          L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVM---------GAAKSINDMEMSEVYAMSVAEAALAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 56  EEVEIHAIQDAVENQLMVGPHQAVARAYIEYRHDRDIAREKKSRLNNE 103


>gi|320547636|ref|ZP_08041921.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus equinus ATCC 9812]
 gi|320447711|gb|EFW88469.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus equinus ATCC 9812]
          Length = 738

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA           S  ++  ++++++  V  +   
Sbjct: 13  PTVKVIKRDGRSVNFDADKIYNALLKA----SNNVTKMSPVIEAKLESISDNIVAEIFDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            K    V I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FKDN--VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQATDIN 116



 Score = 46.0 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K      P +K++  DG  ++F++ ++   + +A + +  +S             +++E
Sbjct: 5   EKEKIATQPTVKVIKRDGRSVNFDADKIYNALLKASNNVTKMSPVIEAKLESISDNIVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
            +    D +   +++  +
Sbjct: 65  IFDRFKDNVKIYEIQNIV 82


>gi|188026380|ref|ZP_02961883.2| hypothetical protein PROSTU_03957 [Providencia stuartii ATCC 25827]
 gi|188020182|gb|EDU58222.1| hypothetical protein PROSTU_03957 [Providencia stuartii ATCC 25827]
          Length = 732

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  +I  AI +A        A+ +I+  D    +      +L       
Sbjct: 25  VIKRDGCQVNFDFQRIQEAIKRA-------SAAVNIQDDDYCLQVATTVTEQLGNR---- 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 74  EKVDIREIQDAVENQLMSGPYKDLARAYIEYRHDRDSAREKRSQLTHD 121


>gi|325578789|ref|ZP_08148836.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159613|gb|EGC71745.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 708

 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I+ AI KA  AV        I  +  I +L+++  T +  H    
Sbjct: 6   VIKRDGSRIGFDLQRITNAIKKAASAVN-------IVDEIYIHDLSQRINTEIFSHY--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  HEIDINQIQKIVEDHLMTSKYPQIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|254831898|ref|ZP_05236553.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 10403S]
 gi|284800577|ref|YP_003412442.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5578]
 gi|284993763|ref|YP_003415531.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5923]
 gi|284056139|gb|ADB67080.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5578]
 gi|284059230|gb|ADB70169.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 08-5923]
          Length = 716

 Score = 89.1 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|47096368|ref|ZP_00233963.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224502427|ref|ZP_03670734.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL R2-561]
 gi|254900532|ref|ZP_05260456.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes J0161]
 gi|254913517|ref|ZP_05263529.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes J2818]
 gi|254937902|ref|ZP_05269599.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes F6900]
 gi|47015242|gb|EAL06180.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258610511|gb|EEW23119.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes F6900]
 gi|293591526|gb|EFF99860.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes J2818]
          Length = 716

 Score = 89.1 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|16799382|ref|NP_469650.1| anaerobic ribonucleoside triphosphate reductase [Listeria innocua
           Clip11262]
 gi|16412734|emb|CAC95538.1| lin0305 [Listeria innocua Clip11262]
          Length = 716

 Score = 89.1 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+E +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIELED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   ++       + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAIELEDETFLEEILLEVVSELPNKTDMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +++             +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDEIQQ-----CVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|23466296|ref|NP_696899.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum NCC2705]
 gi|227546652|ref|ZP_03976701.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239621685|ref|ZP_04664716.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|312134044|ref|YP_004001383.1| nrdd [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482888|ref|ZP_07941895.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|322689748|ref|YP_004209482.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322691698|ref|YP_004221268.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|23327048|gb|AAN25535.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           longum NCC2705]
 gi|227212969|gb|EEI80848.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|239515560|gb|EEQ55427.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|291516291|emb|CBK69907.1| ribonucleoside-triphosphate reductase class III catalytic subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|311773352|gb|ADQ02840.1| NrdD [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915662|gb|EFV37077.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|320456554|dbj|BAJ67176.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320461084|dbj|BAJ71704.1| ribonucleoside triphosphate reductase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 802

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           E+           K   V V KR+G V  FDP  I  A+  AF                +
Sbjct: 7   EETVTDNETKVAAKASTVLVEKRDGRVVDFDPINIISAVKSAF---GDLNKEVGPEEDAM 63

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           I+    Q    +           IEDIQ+ VE +L+ +  + + R Y  YR ++   RA 
Sbjct: 64  IRGFANQVEGEIKGRY--TGPAKIEDIQNLVEHALIDAHLYDVARAYTNYRLDKDIQRAK 121

Query: 132 QSHSKSD 138
            +     
Sbjct: 122 ATDVNEA 128


>gi|255025356|ref|ZP_05297342.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J2-003]
          Length = 716

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|167947198|ref|ZP_02534272.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 72

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 6/78 (7%)

Query: 877 LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936
           + EPSGKKLD +Y+ AW+ GLKTTYYLRS  AT+VEK+T     G +N +    P  +  
Sbjct: 1   MAEPSGKKLDNLYKLAWVRGLKTTYYLRSMGATAVEKTTAS-SSGDVNRLGDGAPAEAPK 59

Query: 937 SLGIPSSCTSDTECEVCQ 954
                +    D +CE CQ
Sbjct: 60  -----ACSILDPDCEACQ 72


>gi|258646237|ref|ZP_05733706.1| anaerobic ribonucleoside-triphosphate reductase [Dialister invisus
           DSM 15470]
 gi|260403624|gb|EEW97171.1| anaerobic ribonucleoside-triphosphate reductase [Dialister invisus
           DSM 15470]
          Length = 735

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
            I    VIKRNG   +FD +KI  AI KA   V G     + +++ I  N+ ++      
Sbjct: 9   VIVRTNVIKRNGQEVTFDITKIINAIGKANHEVAGIHQMNNFQIRAIADNIAKKISNY-- 66

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                    ++EDIQD VE  +M+   +++ ++YV YR +R   R + +       +   
Sbjct: 67  -----PHAANVEDIQDMVETGIMEMRGYEVAQKYVRYRYKREISRKSNTTDDGILSLIEL 121

Query: 145 LK--IMMDDGTLISF 157
               +  ++      
Sbjct: 122 NNEEVKQENSNKNPV 136


>gi|16802325|ref|NP_463810.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes EGD-e]
 gi|16409644|emb|CAD00806.1| lmo0279 [Listeria monocytogenes EGD-e]
 gi|323676613|emb|CBZ41775.1| class III anaerobic ribonucleoside-triphosphate reductase catalytic
           subunit [Listeria monocytogenes EGD-e]
          Length = 710

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|254828739|ref|ZP_05233426.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL N3-165]
 gi|258601145|gb|EEW14470.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL N3-165]
          Length = 716

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   SF+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKASFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|229818102|ref|ZP_04448384.1| hypothetical protein BIFANG_03393 [Bifidobacterium angulatum DSM
           20098]
 gi|229784706|gb|EEP20820.1| hypothetical protein BIFANG_03393 [Bifidobacterium angulatum DSM
           20098]
          Length = 796

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QV KR+G +  FDP  I  A+  AF  ++ +        + +I++L  Q    + +    
Sbjct: 19  QVEKRDGRIVDFDPINIIAAVKSAFADLDKEVGPEE---EALIRDLANQVEGEIKERY-- 73

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
           A    IEDIQ+ VE +L++   + + R Y  YR ++   RA  +    
Sbjct: 74  AGPAKIEDIQNLVEHALIEDHLYDVARTYTNYRLDKDIQRAKATDVNE 121


>gi|152991511|ref|YP_001357233.1| anaerobic ribonucleoside triphosphate reductase [Nitratiruptor sp.
           SB155-2]
 gi|151423372|dbj|BAF70876.1| anaerobic ribonucleoside triphosphate reductase [Nitratiruptor sp.
           SB155-2]
          Length = 707

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G V SF P KI  AI  AF +V                   ++    +L      
Sbjct: 9   IIKRDGSVESFKPYKIEDAIKAAFDSVLVPYD--------------KKVYEAVLIRISFD 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
            +  +E+IQD +E  L ++G+  + + ++ YR      R        D         +
Sbjct: 55  TVKAVEEIQDIIEYELHRAGYFDVMKSFITYRFLHKMQRERILGLTPDTTFVDTTHAV 112


>gi|306832414|ref|ZP_07465567.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425454|gb|EFM28573.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 738

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA           S  V+  ++ +++  +  +   
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKA----SNNVTKMSPVVEAKLEAISDNIIAEIFDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            K    V I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FKDN--VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQATDIN 116



 Score = 45.2 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K      P +K++  DG  ++F++ ++   + +A + +  +S             +++E
Sbjct: 5   EKETIATQPAVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
            +    D +   +++  +
Sbjct: 65  IFDRFKDNVKIYEIQNIV 82


>gi|332686125|ref|YP_004455899.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Melissococcus plutonius ATCC 35311]
 gi|332370134|dbj|BAK21090.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 730

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 12/137 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS-RSIRVQDIIKNLTEQTVTRLL 84
           +  +++IKR+G +  F   KI  A+MKA   + G        R+Q+I+  + ++   R  
Sbjct: 16  LSKIKIIKRDGRLVDFSNKKIYDALMKAERQINGSLDPLAYERIQEILDRVDQEISERFT 75

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
            +      V I +IQ+ VE +L++   +++   Y+ YR  R   R+  +           
Sbjct: 76  NN------VKIYEIQNIVEHTLLEKNEYELAEAYINYRTRRDFERSKATDINFTIG---- 125

Query: 145 LKIMMDDGTLISFNSKR 161
            K++  D T+++ N+ +
Sbjct: 126 -KLINKDQTIVNENANK 141



 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS---------- 178
             +  + +D     K+KI+  DG L+ F++K++   + +A   +   +            
Sbjct: 4   KQKERTTNDDINLSKIKIIKRDGRLVDFSNKKIYDALMKAERQINGSLDPLAYERIQEIL 63

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
             V  E  +   + +   +++  +  +     E E   A +  R
Sbjct: 64  DRVDQEISERFTNNVKIYEIQNIVEHTLLEKNEYELAEAYINYR 107


>gi|327439701|dbj|BAK16066.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris
           StLB046]
          Length = 207

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 21/178 (11%)

Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830
           +   + GV+  ++P +   Y +S   G F  V + +V E    +   +            
Sbjct: 2   STGTMVGVATGLEPYFSFTYYRSGRLGKFIEVKAEIVKEYLDANPGVDE----------- 50

Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889
                   ++L     ++ E+      +     Q WID + S  +   +    +++  +Y
Sbjct: 51  --------NNLPDWFKSSMELSAEAHADVQCIIQNWIDSSISKTVNAPKGYGVEQVQKVY 102

Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947
            + +  G K        S    +  TLK  +   +     +    +           D
Sbjct: 103 ERLYRGGAKGGTVYVDGSR-DTQVLTLKAEEANSDEQLEFEELKQSEDQVKRQVVLVD 159


>gi|149194704|ref|ZP_01871799.1| anaerobic ribonucleoside triphosphate reductase [Caminibacter
           mediatlanticus TB-2]
 gi|149135127|gb|EDM23608.1| anaerobic ribonucleoside triphosphate reductase [Caminibacter
           mediatlanticus TB-2]
          Length = 698

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G + ++ P KI  AI KAF A + +       V + + NL ++           
Sbjct: 3   KVIKRDGRIDNYVPYKIEEAIKKAFKATKVEYDPL---VYEEVINLLKKV---------- 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                +E IQD +E SL + G+  + + ++LYR      R 
Sbjct: 50  -DTPEVEFIQDLIEKSLYKHGYFDVMKNFMLYRHLHKLQRE 89


>gi|288906369|ref|YP_003431591.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           gallolyticus UCN34]
 gi|325979382|ref|YP_004289098.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733095|emb|CBI14676.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus gallolyticus UCN34]
 gi|325179310|emb|CBZ49354.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 738

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             V+VIKR+G   +FD  KI  A++KA           S  V+  ++ +++  +  +   
Sbjct: 13  PAVKVIKRDGRSVNFDADKIYNALVKA----SNNVTKMSPVVEAKLEAISDNIIAEIFDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            K    V I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FKDN--VKIYEIQNIVEHELLEANEYAIAQEYINYRTKRDFARSQATDIN 116



 Score = 45.2 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K      P +K++  DG  ++F++ ++   + +A + +  +S             +++E
Sbjct: 5   EKETIATQPAVKVIKRDGRSVNFDADKIYNALVKASNNVTKMSPVVEAKLEAISDNIIAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
            +    D +   +++  +
Sbjct: 65  IFDRFKDNVKIYEIQNIV 82


>gi|194015138|ref|ZP_03053754.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
 gi|194012542|gb|EDW22108.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           pumilus ATCC 7061]
          Length = 262

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 108/262 (41%), Gaps = 21/262 (8%)

Query: 209 LIEKEPNYAKV----TAR-FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           +I+K+  +         R + ++ + +  +     K +     +      E+   Y  E 
Sbjct: 16  MIQKDGRFQFEKDEEAVRAYFIDYVNQNTVFFHDLKEKLDYLRDNDYYETEFLDAYTFEE 75

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323
           +KA         F      +  K+  D+      L+        +     +E  +    R
Sbjct: 76  IKAVYKTAYAAKFRFPSFMSAFKFYNDY-----ALKT-------NDRKKILERYED---R 120

Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYG 382
           +A            +A+EF  L+    +  +TPT  N+   R  ++ SCFL  V D L  
Sbjct: 121 IACCALYFGKGDGAKAIEFAKLMIRQEYQPATPTFLNAGRKRRGEMVSCFLLEVNDSLND 180

Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442
           I  A+  +  L+K  GG+  + + +R  G  I    G ++GV+  +K+ ++     +Q G
Sbjct: 181 ISRAIDISMQLSKSGGGVSLNLSKIRAKGESIKDVAGATKGVVGVMKLLDNAFRYADQMG 240

Query: 443 KRKGAVCAYLETWHIDVEEFLD 464
           +R+GA  AYL  +H D+ +FLD
Sbjct: 241 QRQGAGAAYLNVFHADINDFLD 262


>gi|153836863|ref|ZP_01989530.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ3810]
 gi|149749821|gb|EDM60566.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ3810]
          Length = 706

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLKDHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|322390437|ref|ZP_08063958.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 903]
 gi|321142895|gb|EFX38352.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 903]
          Length = 743

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI     KA +    +  S +  ++  ++ + ++ +  +L+   + 
Sbjct: 24  VEKRDGRRVPFDVEKI----YKALLKATEEVTSLTPVMEAKLEAIVDRVIAEILERFPNG 79

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+  +   
Sbjct: 80  --VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERSKATDIN 123



 Score = 44.5 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    +AP + +   DG  + F+ +++   + +A   +  ++             V++E 
Sbjct: 13  EEKLRMAPDIFVEKRDGRRVPFDVEKIYKALLKATEEVTSLTPVMEAKLEAIVDRVIAEI 72

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +   +G+   +++  +        E     + +T R
Sbjct: 73  LERFPNGVKIYEIQNVVEHELLQANEYAIAESYITYR 109


>gi|328470708|gb|EGF41619.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           parahaemolyticus 10329]
          Length = 706

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLKDHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|262395407|ref|YP_003287260.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. Ex25]
 gi|262339001|gb|ACY52795.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. Ex25]
          Length = 706

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLKDHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|308235049|ref|ZP_07665786.1| anaerobic ribonucleoside triphosphate reductase [Gardnerella
           vaginalis ATCC 14018]
          Length = 333

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           VQV KR+G V  FD   I  AI  AF  +  +   +    + +I+++T+     +     
Sbjct: 39  VQVEKRDGRVVDFDQMNIIMAIKAAFKDLRKEVGPQE---EQMIRDITDHIEAEIQDRY- 94

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 IEDIQ  VE  L+++  +++ R Y  YR  R   RA  +            +++
Sbjct: 95  -NGPAKIEDIQTLVEHGLIENHLYEVARCYTSYRLNRDIDRAKATDINEAVN-----RLV 148

Query: 149 MDDGTLISFNSKR 161
             D +L+  N+ +
Sbjct: 149 NRDESLVRENANK 161


>gi|262283635|ref|ZP_06061400.1| ribonucleoside-triphosphate reductase [Streptococcus sp. 2_1_36FAA]
 gi|262260692|gb|EEY79393.1| ribonucleoside-triphosphate reductase [Streptococcus sp. 2_1_36FAA]
          Length = 734

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + V+KR+G   +FD  KI +A++KA   V       S  ++  ++ +TE+ V  +  
Sbjct: 12  IPNIYVVKRDGRRVNFDVDKIYKALVKAACEV----TPMSPLLEAKLEGITEKIVAEITH 67

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+ +  + I + Y+ YR +R   R+  +   
Sbjct: 68  RFSQD--VKIYEIQNIVEHELLNANEYAIAKAYISYRTQRDFDRSQATDIN 116


>gi|28900796|ref|NP_800451.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260365699|ref|ZP_05778213.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus K5030]
 gi|260896111|ref|ZP_05904607.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus Peru-466]
 gi|260902097|ref|ZP_05910492.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ4037]
 gi|28809242|dbj|BAC62284.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088140|gb|EFO37835.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus Peru-466]
 gi|308109924|gb|EFO47464.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AQ4037]
 gi|308111794|gb|EFO49334.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus K5030]
          Length = 706

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    K  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLKDHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|60416880|emb|CAD71200.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 83

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYY 902
            +  A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I   A   G+KT YY
Sbjct: 8   YYKEAYDMDMFKVVDMIAAIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYY 67

Query: 903 LRSR 906
            R++
Sbjct: 68  ARTK 71


>gi|154483115|ref|ZP_02025563.1| hypothetical protein EUBVEN_00816 [Eubacterium ventriosum ATCC
           27560]
 gi|149735923|gb|EDM51809.1| hypothetical protein EUBVEN_00816 [Eubacterium ventriosum ATCC
           27560]
          Length = 368

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG    FD  KI  AI KA   VE        +++ + K + +Q         +S
Sbjct: 7   RVIKRNGEEVVFDVQKILNAIRKANNEVEPIHRLNEYQIEAVGKIVMDQI-------CQS 59

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
                +EDIQD VE  +M+   +++ + YV YR +R   R A +       +  ++   +
Sbjct: 60  NHATAVEDIQDMVERGIMEMRGYEVAQIYVRYRYKRDMARKANTTDDGILALIDQINEEV 119

Query: 148 MMDDGTLIS 156
             ++     
Sbjct: 120 KQENSNKNP 128


>gi|260582007|ref|ZP_05849802.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae NT127]
 gi|260094897|gb|EEW78790.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae NT127]
          Length = 707

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRTEFEIQRIINAIKKAANAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|312865276|ref|ZP_07725504.1| ATP cone domain protein [Streptococcus downei F0415]
 gi|311099387|gb|EFQ57603.1| ATP cone domain protein [Streptococcus downei F0415]
          Length = 112

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+ KR+G V  FDP KI +AI+KA  +V         +++  +  +T++ V  L + + 
Sbjct: 1   MQITKRSGQVVEFDPDKIYQAILKAAQSVYVLDD----KLRQELAEVTKKVVIDLEEAHA 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  +Q QVE  LM +G+  I   Y+ YR +R   R
Sbjct: 57  DRPTISM--VQSQVENRLMDAGYINIAEHYISYRLQRDLER 95


>gi|154489082|ref|ZP_02029931.1| hypothetical protein BIFADO_02392 [Bifidobacterium adolescentis
           L2-32]
 gi|154083219|gb|EDN82264.1| hypothetical protein BIFADO_02392 [Bifidobacterium adolescentis
           L2-32]
          Length = 801

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           +     PE +K + V KR+G V  FDP  I  A+  AF  ++ K   +  R   +I+++ 
Sbjct: 11  TETENAPEMVKVL-VEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEER---LIRDIA 66

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q    +           IEDIQ+ VE  L++   + + R Y  YR  +   RA  +   
Sbjct: 67  NQVEAEIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDIN 124

Query: 137 S 137
            
Sbjct: 125 E 125


>gi|157151175|ref|YP_001451281.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157075969|gb|ABV10652.1| ribonucleoside-triphosphate reductase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 734

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           I  + V+KR+G   +FD  KI +A++KA   V       S  ++  ++ +TE+ V  +  
Sbjct: 12  IPNIYVVKRDGRRVNFDVDKIYKALVKAACEV----TPMSPLLEAKLEGITEKIVAEITH 67

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+ +  + I + Y+ YR +R   R+  +   
Sbjct: 68  RFSQD--VKIYEIQNIVEHELLNANEYAIAKAYISYRTQRDFDRSQATDIN 116


>gi|330830675|ref|YP_004393627.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas veronii
           B565]
 gi|328805811|gb|AEB51010.1| Anaerobic ribonucleoside-triphosphate reductase, putative
           [Aeromonas veronii B565]
          Length = 705

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV     +           L  +    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVSRAAEAVNQANPA-----------LASRIANAVSQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+     +
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARGRLAQE 101


>gi|315639678|ref|ZP_07894818.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus italicus DSM 15952]
 gi|315484639|gb|EFU75095.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus italicus DSM 15952]
          Length = 729

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 10/137 (7%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++K ++V+KR+G    FD  KI  A++KA    +            +I  +  Q    + 
Sbjct: 17  QLKKMKVVKRDGRFVVFDDQKIYDALLKA---TQQVNGPLQASDHQVIHQIVTQINQEIA 73

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
              K    V I +IQ+ VE +L+Q+  +++   Y+ YR +R   R               
Sbjct: 74  ARFKKN--VKIYEIQNIVEHTLIQNHLYQLAEHYMHYRSQRDLEREQALDINVTID---- 127

Query: 145 LKIMMDDGTLISFNSKR 161
            K+   D T+++ N+ +
Sbjct: 128 -KLRNRDQTVVNENANK 143


>gi|254302715|ref|ZP_04970073.1| ribonucleoside-triphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322907|gb|EDK88157.1| ribonucleoside-triphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 728

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD ++I  AI K F        +       +++ +  Q           
Sbjct: 3   RVIKRDGSVVEFDRNRIINAIRKTF------EQASREPNMKLLEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 51  DKVLSVEQIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIREREKGIYRQIGELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIIPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|254520476|ref|ZP_05132532.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           7_2_43FAA]
 gi|226914225|gb|EEH99426.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           7_2_43FAA]
          Length = 705

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-IKNLTEQTVTRLLQHNKS 89
           V+KR+G   SF+  KI+ AI KA       G     R++++ + ++ ++ +  + +    
Sbjct: 4   VVKRDGREVSFNSVKIATAIRKA-------GDEIGERLKEVELLDIVKKVINYIEE--TG 54

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
              + +E+IQ+ VE SL+ S +  I   Y  YR+ER+ VR  +S       
Sbjct: 55  NEKITVEEIQNLVEKSLIDSNYKNIKTAYSSYRKERTKVREIKSDLMRAIE 105



 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEA----CSGLQDVSSKIVLSETYKNM----YDGLSE 195
            L ++  DG  +SFNS ++   + +A       L++V    ++ +    +     + ++ 
Sbjct: 1   MLYVVKRDGREVSFNSVKIATAIRKAGDEIGERLKEVELLDIVKKVINYIEETGNEKITV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +++  +     +LI+      K          R+E       K       E   +  + 
Sbjct: 61  EEIQNLVEK---SLIDSNYKNIKTAY----SSYRKERTKVREIKSDLMRAIEKIGIETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|293400325|ref|ZP_06644471.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306725|gb|EFE47968.1| anaerobic ribonucleoside-triphosphate reductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 720

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+G    FD SKI  A+ KA  +V         ++  I+ N+T      L +   
Sbjct: 1   MNIIKRSGKEVVFDASKIEDAVCKANQSVTHIYQMSGEQIAQIVTNVT-AYCQHLNRSA- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                 +E+IQD+VE  +M+    K+   Y+ YR +R  VR + S  K    +  
Sbjct: 59  -----TVEEIQDKVEEEIMKQSAFKVANNYITYRYKRELVRKSNSTDKQILSLLE 108


>gi|268592801|ref|ZP_06127022.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rettgeri DSM 1131]
 gi|291311585|gb|EFE52038.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rettgeri DSM 1131]
          Length = 714

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A  AV        ++  D    +      +L   ++  
Sbjct: 7   VIKRDGCQVGFDLPRIQEAVKRAAAAVN-------VKDDDYCLQVASVVTEQLCSRDR-- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 58  --VDIADIQDAVENQLMAGPYKDLARAYIEYRHDRDSEREKRSQLTHD 103


>gi|153832814|ref|ZP_01985481.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           HY01]
 gi|148870948|gb|EDL69838.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           HY01]
          Length = 706

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    +  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLQDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|269959772|ref|ZP_06174151.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           1DA3]
 gi|269835526|gb|EEZ89606.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio harveyi
           1DA3]
          Length = 706

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    +  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLQDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|290892573|ref|ZP_06555566.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J2-071]
 gi|290557882|gb|EFD91403.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J2-071]
          Length = 716

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|46906520|ref|YP_012909.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091416|ref|ZP_00229213.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 4b H7858]
 gi|226222915|ref|YP_002757022.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes Clip81459]
 gi|254825669|ref|ZP_05230670.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J1-194]
 gi|254853448|ref|ZP_05242796.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL R2-503]
 gi|254932506|ref|ZP_05265865.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes HPB2262]
 gi|300764588|ref|ZP_07074580.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL N1-017]
 gi|46879785|gb|AAT03086.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47020093|gb|EAL10829.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. 4b H7858]
 gi|225875377|emb|CAS04074.1| Putative anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606817|gb|EEW19425.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL R2-503]
 gi|293584062|gb|EFF96094.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes HPB2262]
 gi|293594913|gb|EFG02674.1| class III anaerobic ribonucleoside-triphosphate reductase NrdD
           [Listeria monocytogenes FSL J1-194]
 gi|300514695|gb|EFK41750.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL N1-017]
 gi|328467888|gb|EGF38928.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 1816]
 gi|328476118|gb|EGF46827.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes 220]
 gi|332310697|gb|EGJ23792.1| Oxygen-sensitive ribonucleoside-triphosphate reductase [Listeria
           monocytogenes str. Scott A]
          Length = 716

 Score = 88.0 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|156976928|ref|YP_001447834.1| anaerobic ribonucleoside triphosphate reductase [Vibrio harveyi
           ATCC BAA-1116]
 gi|156528522|gb|ABU73607.1| hypothetical protein VIBHAR_05713 [Vibrio harveyi ATCC BAA-1116]
          Length = 706

 Score = 88.0 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    +  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLQDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|269967747|ref|ZP_06181795.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           alginolyticus 40B]
 gi|269827653|gb|EEZ81939.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           alginolyticus 40B]
          Length = 706

 Score = 88.0 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    +  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLREH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLREHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|217965627|ref|YP_002351305.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes HCC23]
 gi|217334897|gb|ACK40691.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes HCC23]
 gi|307569824|emb|CAR83003.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes L99]
          Length = 716

 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|313611065|gb|EFR85944.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           monocytogenes FSL F2-208]
          Length = 603

 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|224498872|ref|ZP_03667221.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes Finland 1988]
          Length = 716

 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|296875605|ref|ZP_06899676.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433402|gb|EFH19178.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 743

 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI     KA +    + AS +  ++  ++ + ++ +  +L+   + 
Sbjct: 24  VEKRDGRRVQFDVEKI----YKALLKATEEVASLTPVLEAKLEAIVDRVIAEILERFPNG 79

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+  +   
Sbjct: 80  --VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERSKATDIN 123



 Score = 42.5 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    +AP + +   DG  + F+ +++   + +A   +  ++             V++E 
Sbjct: 13  EEKLRMAPDIFVEKRDGRRVQFDVEKIYKALLKATEEVASLTPVLEAKLEAIVDRVIAEI 72

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +   +G+   +++  +        E     + +T R
Sbjct: 73  LERFPNGVKIYEIQNVVEHELLQANEYAIAESYITYR 109


>gi|319937925|ref|ZP_08012325.1| hypothetical protein HMPREF9488_03161 [Coprobacillus sp. 29_1]
 gi|319806831|gb|EFW03470.1| hypothetical protein HMPREF9488_03161 [Coprobacillus sp. 29_1]
          Length = 587

 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 116/297 (39%), Gaps = 31/297 (10%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAF--MAVEGKGASRSIRVQDIIKN--LTEQTVTRL 83
            +++IKRNG +  FD  KI +AI+ A   +  + + A  + R+   ++   L ++    L
Sbjct: 16  QMKIIKRNGSLEDFDRGKIEKAILGAMEDLGADYRNAGVARRISREVEREFLDKEAQETL 75

Query: 84  LQHNKSALI-----VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR-AAQSHSKS 137
           + H  +  +     V I+DI+D+VE  LM S    + R+Y+ YR ++   R   ++   +
Sbjct: 76  IAHKDNPNLLLHYQVPIKDIEDRVEEKLMGSHCKDVARQYIRYRYKKKQQRDKYENIKSA 135

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-SKIVLSETYKN-------M 189
              I     +   +  +  ++        E A    +D++ S  + SE  K        +
Sbjct: 136 VKKIIKAESVNNSNANVDEYSFGG--KKFEGAGLLFKDIALSDFISSEVAKAHNENRIYI 193

Query: 190 YD---------GLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKL-RREVLTTVYK 238
           +D           S  DL+  L     T      P  +  TA  L+  + + +       
Sbjct: 194 HDLDNWATGMHNCSFVDLQRLLKEGFVTRNGDVRPANSISTAMQLVAVIFQCQSQVQFGG 253

Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295
                   ++     + F ++ ++G++     + +   D+      LK E    F Y
Sbjct: 254 VASAHIDFDLAPYVKKSFKKHFQDGLEFVENDKGVSIADIDMNNQVLKNEYPKTFRY 310


>gi|192824226|ref|YP_001994867.1| gp50 [Mycobacterium phage Pukovnik]
 gi|190610456|gb|ACE79976.1| gp50 [Mycobacterium phage Pukovnik]
          Length = 685

 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 106/624 (16%), Positives = 185/624 (29%), Gaps = 155/624 (24%)

Query: 375 TVPDDLYGIFGALQENAMLAK----YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF--- 427
            V D   G   AL +                 D + VR  GA +    GK+ G  PF   
Sbjct: 169 EVEDSREGWAAALTDLIDTHYRDEVSHFQRVYDVSRVRPEGAKLKTFGGKASGPKPFAEM 228

Query: 428 -----------------------LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464
                                  +++ +  A  V  GG R+ A  + +      + EF++
Sbjct: 229 LIKVGKILSQHAYEGLAVSGISAMEIDHAIASCVVAGGVRRSARMSMMHWADPQITEFVN 288

Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524
            +  +G+        N +  + D F +   ++                            
Sbjct: 289 CKNKSGE----HWTTNISVEVDDKFWRHAIKSPQ-------------------------R 319

Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584
            E +      ++   + A  +   +       G P +      N+  P      V  +N 
Sbjct: 320 PENEGY---GRLDDDVLAQNVLYTLAQGAVHNGEPGMWDSSLSNVGEPN----RVVCTNP 372

Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTI 643
           C EITL         CNLG INL A   +  + DY  L    R   R L      +    
Sbjct: 373 CGEITLEP----WEPCNLGHINLAAFVTDAGKTDYLDLIRAHRLMTRFL-IRATFSAVAD 427

Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703
            K+++    +R IG+G +G  S L L    Y+     +     +  ++    S + +   
Sbjct: 428 PKSREVLDRNRRIGVGHLGVASYLALTGRRYSQAPGDKRFTAFLRELASEVDSEAQKFCH 487

Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763
           E                     I +  + R                              
Sbjct: 488 ELR-------------------IPVPVKKR------------------------------ 498

Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823
             IAPT T+A + GVS+ I P +   + +      F  V+ F  ++L +       +  D
Sbjct: 499 -TIAPTGTVAKLAGVSEGIHPIFSRYFNRRIR---FNKVSDF--DQLMEMYSQGYDVEDD 552

Query: 824 LKYHDGSIGNIE---------RIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQSL 873
           L   + S+  I                ++I  +A ++    L+   +  Q  W D A S 
Sbjct: 553 LFAPNTSVVTIPTKDTLVQAVEDRGWDEEIVESADDLTLTELMAFQALYQTCWADNAVSF 612

Query: 874 NLYLDE--PSGKKLDFIY-RQAWLMGL-KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929
              +D        +     R A   GL K +           E S  +    ++      
Sbjct: 613 TANVDPDAYKAADVADTLKRFA---GLIKGSTIF-------PEASFQQAPYERITKQQYE 662

Query: 930 DPNSSTHSLGIPSSCTSDTECEVC 953
              +     G+  +C +      C
Sbjct: 663 SAAAKAVEDGVDEACANG----AC 682


>gi|257463668|ref|ZP_05628058.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           D12]
          Length = 750

 Score = 88.0 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD  +I  AI  AF          S  + ++++  +  Q          
Sbjct: 20  KVIKRDGTVIDFDAQRIVNAISMAF-------KQHSRVIPEELVSKIAHQIENL------ 66

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAP 143
              I+ +E+IQD V   LM S    I   Y  YR  ++++R  +                
Sbjct: 67  ENKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNE 126

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            L I   +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 127 SLLIENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKG---EIHLHDLDYLL 183



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 72/211 (34%), Gaps = 32/211 (15%)

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191
           ++ S  +       K++  DGT+I F+++R+   +  A      V  + ++S+    + +
Sbjct: 6   KNKSLEERGNFYGKKVIKRDGTVIDFDAQRIVNAISMAFKQHSRVIPEELVSKIAHQIEN 65

Query: 192 G----LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR---REVLTTVYKKPQKAT 244
                +S  +++  ++       EK+   A  + R L  ++R   + +   + +    + 
Sbjct: 66  LENKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASN 125

Query: 245 HHEMQCL--------------------YPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
              +                          Y  + +   +K   +   +   DL YL   
Sbjct: 126 ESLLIENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKGEIHLHDLDYL--- 182

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               R+   E + ++ +        N   +E
Sbjct: 183 --LFRETNCELVNIERMLKGGCNIGNAKMLE 211


>gi|300853392|ref|YP_003778376.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
 gi|300433507|gb|ADK13274.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           ljungdahlii DSM 13528]
          Length = 701

 Score = 88.0 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHN 87
           + V+KR+G    FD  KI+ AI        G        +++    +LT++    +    
Sbjct: 2   LHVVKRDGRRVPFDSIKITNAIK-------GSCDEIGFDLKESEFIDLTQKVTENIENL- 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
            +   V++EDIQ+ VE  LM+ G+ KI   Y  YR ER+D+R  +S
Sbjct: 54  -NLKEVNVEDIQNIVEEVLMKKGYVKIGLAYSNYRRERNDIREIKS 98



 Score = 42.9 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYDGLSESDLE 199
            L ++  DG  + F+S ++   ++ +C      L++     +  +  +N+ + L+  ++ 
Sbjct: 1   MLHVVKRDGRRVPFDSIKITNAIKGSCDEIGFDLKESEFIDLTQKVTENI-ENLNLKEVN 59

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
              I +    +  +  Y K+         RRE       K       +   +  +     
Sbjct: 60  VEDIQNIVEEVLMKKGYVKIG--LAYSNYRRERNDIREIKSDLMKAIDKIGVQTDRDNAN 117

Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKY 287
           +     A+LL  +        LA   K+
Sbjct: 118 VGNNFSAKLLRIASESNKWHNLATMPKH 145


>gi|253682276|ref|ZP_04863073.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum D str. 1873]
 gi|253561988|gb|EES91440.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum D str. 1873]
          Length = 703

 Score = 88.0 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKS 89
           V+KR+G    FD  KI+ AI        G     +  +++  +  LT++ + ++   N  
Sbjct: 4   VVKRDGRRVPFDSIKITNAIK-------GSADEIAFNLKESEVIELTQKVIHQIEDKNCD 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +E+IQ+ VE +L ++G+  I + Y  YR ER+ +R  +SH          + ++ 
Sbjct: 57  E--ISVEEIQNIVENALQKNGYELIWKTYSNYRRERTKIREKKSHL---------MTVIQ 105

Query: 150 DDGTLISFN 158
             G     +
Sbjct: 106 KIGVETDRD 114



 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 15/181 (8%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVE----EACSGLQDVSSKIVLSETYKNM----YDGLSE 195
            L ++  DG  + F+S ++   ++    E    L++     +  +    +     D +S 
Sbjct: 1   MLYVVKRDGRRVPFDSIKITNAIKGSADEIAFNLKESEVIELTQKVIHQIEDKNCDEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +++  ++ ++      E  +            RRE      KK    T  +   +  + 
Sbjct: 61  EEIQN-IVENALQKNGYELIWKT------YSNYRRERTKIREKKSHLMTVIQKIGVETDR 113

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
               +     ++LL  +        L    K+               D Y L IN   IE
Sbjct: 114 DNANVGNNFSSKLLRIASESNKWHNLGMMPKHLAKLHENGDLYYHDLDSYNLTINCLNIE 173

Query: 316 M 316
            
Sbjct: 174 T 174


>gi|145630624|ref|ZP_01786403.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
 gi|144983750|gb|EDJ91200.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
          Length = 707

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|91224720|ref|ZP_01259981.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           alginolyticus 12G01]
 gi|91190608|gb|EAS76876.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           alginolyticus 12G01]
          Length = 706

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      +          +    ++ 
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLRAH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 54  DEVHIHEIQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  +D +   +++  
Sbjct: 5   VIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLRAHDEVHIHEIQDL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINEN 117


>gi|66354484|gb|AAY44877.1| ribonucleotide reductase large subunit [Tortoise herpesvirus 2]
          Length = 125

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798
             +    WD L+ ++   G+ NS  +A+ PT + + I   S+   P + NLY K + +G+
Sbjct: 10  PLSFSERWDVLRPKIIEHGLYNSQFIALMPTVSSSQITESSEGFYPVFTNLYSKLSTNGE 69

Query: 799 FTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNI-ERIP-DDLKKIHATAFE 850
               N  L+ EL      +E +  +  L+ H   +      IP D +   + TAFE
Sbjct: 70  TIKPNVLLLRELNSVFKGEEYVAALDKLEKHKWVVKEAFPDIPSDHVLSKYLTAFE 125


>gi|317061216|ref|ZP_07925701.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D12]
 gi|313686892|gb|EFS23727.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D12]
          Length = 741

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD  +I  AI  AF          S  + ++++  +  Q          
Sbjct: 11  KVIKRDGTVIDFDAQRIVNAISMAF-------KQHSRVIPEELVSKIAHQIENL------ 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAP 143
              I+ +E+IQD V   LM S    I   Y  YR  ++++R  +                
Sbjct: 58  ENKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNE 117

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            L I   +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 118 SLLIENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKG---EIHLHDLDYLL 174


>gi|146301794|ref|YP_001196385.1| anaerobic ribonucleoside triphosphate reductase [Flavobacterium
           johnsoniae UW101]
 gi|146156212|gb|ABQ07066.1| anaerobic ribonucleoside-triphosphate reductase [Flavobacterium
           johnsoniae UW101]
          Length = 707

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    F+  KI  AI KAF +V                 + ++ +  +L   +  
Sbjct: 5   VIKRNGDYKPFEAYKIQDAIQKAFKSVNLP--------------MDKKILKIVLNGLEPK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
               +E+IQD +E  L ++G+ K  R +++YR  R   R   +    D      
Sbjct: 51  YSWPVEEIQDSIERVLFENGYFKTMRSFIIYRHTRKLQREHINGLNDDTTYVDS 104


>gi|196046441|ref|ZP_03113666.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225863316|ref|YP_002748694.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228914024|ref|ZP_04077646.1| Ribonucleotide reductase, alpha subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229090406|ref|ZP_04221649.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus Rock3-42]
 gi|229183645|ref|ZP_04310868.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus BGSC 6E1]
 gi|301052992|ref|YP_003791203.1| ribonucleoside-diphosphate reductase subunit alpha, C-terminal
           domain-containing protein [Bacillus anthracis CI]
 gi|196022625|gb|EDX61307.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide
           reductase) [Bacillus cereus 03BB108]
 gi|225787696|gb|ACO27913.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus
           cereus 03BB102]
 gi|228599888|gb|EEK57485.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228692989|gb|EEL46707.1| Ribonucleotide reductase, alpha subunit [Bacillus cereus Rock3-42]
 gi|228845629|gb|EEM90658.1| Ribonucleotide reductase, alpha subunit [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375161|gb|ADK04065.1| ribonucleoside-diphosphate reductase alpha chain, C-terminal domain
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 106

 Score = 87.6 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
            +  +  D    + ++++++   LI+  +  Q+ IDQ  S  LY++ + S ++L   Y  
Sbjct: 20  PMPYLSKDTFWYYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIY 79

Query: 892 AWLMGLKTTYYLRSRSATSVE 912
           A   GLK+ YY R+R  +  E
Sbjct: 80  AHKKGLKSLYYTRTRKLSVEE 100


>gi|116871673|ref|YP_848454.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116740551|emb|CAK19671.1| anaerobic ribonucleoside-triphosphate reductase [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 716

 Score = 87.6 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A++ +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIDLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   +        + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAIDLEDETFLEEILLEVVSELPNKTDMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +     I         +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDE-----IQHCVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|57867411|ref|YP_189076.1| truncated ribonucleoside-diphosphate reductase 2 alpha subunit
           [Staphylococcus epidermidis RP62A]
 gi|57638069|gb|AAW54857.1| truncated ribonucleoside-diphosphate reductase 2 alpha subunit
           [Staphylococcus epidermidis RP62A]
          Length = 87

 Score = 87.6 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 834 IERIPDDLKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891
           +  +  +    ++ TAF+I    +I  A+  QKWIDQ  S  L+++ E    KL  +Y  
Sbjct: 1   MPYLSPETMWFYSPTAFDIPQEHIINVAAVAQKWIDQGVSTILFVNSEIETNKLARLYAY 60

Query: 892 AWLMGLKTTYYLRSRSATSVE 912
           A   GLK+ YY R++  +  E
Sbjct: 61  AHDRGLKSLYYTRNKLISIAE 81


>gi|20026646|ref|NP_612688.1| ribonucleotide reductase subunit 1 [Panine herpesvirus 2]
 gi|19881074|gb|AAM00694.1|AF480884_46 ribonucleotide reductase large subunit UL45 [Panine herpesvirus 2]
          Length = 945

 Score = 87.6 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 40/337 (11%)

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE--FEIAYENYERQADRGEIKVFR 538
            A  +P L MKR              V+      G E  F+  Y   E    +       
Sbjct: 520 YAFNVPSLLMKRYRGRQPQYCLFGRAVARRLSDLGHEAAFDREYRRCEESCPKV------ 573

Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEET 597
            ++     +K+L      G   + F       S       +   + L  ++      E  
Sbjct: 574 TVNTEDFLKKVLVCALR-GRASVVFIHHVVKYSMLACESNLCLPACLSPDMASCHFGEYD 632

Query: 598 AVCNLGSINLLAH------------------FANNQFDYDKLASTIRTAVRVLDNVIDIN 639
           A      +NL                          FD   L   +  AV   +  +D  
Sbjct: 633 APVQRLMVNLSRCVFARSEQHEPHSPDVVLGNTRRYFDLRVLRELVTEAVIWGNARLDAL 692

Query: 640 CHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698
                   + +    R + +G++G  + L  L   Y    + ++ +   E + F A+ AS
Sbjct: 693 VAASDWWVENAVDRLRPLHIGVVGLHTVLMRLGFTY--FASWDLIERIFEHMYFAAVRAS 750

Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757
           V+L +        F+ +++  G F  +        R  L++       W+ L+  +   G
Sbjct: 751 VDLCKAGLPRCDWFERTIYAGGKFIFELYR-----RPRLSLPPA---RWEALRADMLEHG 802

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           MRN   +++ P   +A++  V+ S+  +   +Y +  
Sbjct: 803 MRNCQFLSVGPDDEVAHLWSVTPSVWAARDCVYDEET 839


>gi|167945438|ref|ZP_02532512.1| ribonucleotide-diphosphate reductase subunit alpha [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 93

 Score = 87.6 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315
             Y++  VK  LL   +  +DL  + + +K ERD  F YLGLQ LYDRYF+H   G+R E
Sbjct: 6   KAYVKRAVKLELLDSRLQQYDLQRITDAIKPERDLQFNYLGLQTLYDRYFIHTEEGTRFE 65

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEF 342
           +PQAFFMRVAMGLA+ E ++E RA+E 
Sbjct: 66  LPQAFFMRVAMGLAINEIDREGRAIEL 92


>gi|256845818|ref|ZP_05551276.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_36A2]
 gi|256719377|gb|EEU32932.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_36A2]
          Length = 728

 Score = 87.6 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQISELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|296327376|ref|ZP_06869925.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155491|gb|EFG96259.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 728

 Score = 87.6 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|304437818|ref|ZP_07397767.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369175|gb|EFM22851.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 761

 Score = 87.6 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 110/345 (31%), Gaps = 44/345 (12%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
              + +    V KR G    +D SKI  AI  A         +        I  +T+   
Sbjct: 3   KGAKSMTVTTVTKRAGNAVPYDRSKILNAITSASKEYVHPMTAL------EIDTVTKSVE 56

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  +    + +E+IQD VE  L+  GH+ I R Y+ YR+  +  R AQ H      
Sbjct: 57  EAFGDRTE----ISVEEIQDLVEKQLLAHGHYDIARRYITYRQRHAQRRRAQKHLMESYR 112

Query: 141 ----IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE----TYKNMYDG 192
                      +  D   I+ ++  + ++++    G +      VL E      +  +  
Sbjct: 113 DIFFADAVDSDLKRDNANINTDAS-MGIMLKLGAEGAKHFVDNYVLDERYATADRENFIH 171

Query: 193 LSESDLETALIFSS----RTLIE----------KEPNYAKVTARFLLEKLRREVLTTVYK 238
           + + D               L            +EPN  +  A      ++         
Sbjct: 172 IHDKDFSLITFNCCQIDLLKLFRGGFSTGHGFLREPNSIRAYASLACIAIQSNQNDMFGG 231

Query: 239 KPQKATHHEMQCLYPEYFCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
           +   A  + M     + F + I EE  KA L H     F        L+ E DFA     
Sbjct: 232 QSINAFDYAMADGVKKSFRKAILEEAWKALLYHIGHGYFTHEAFKKALRAELDFAVCV-- 289

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
                  Y    + +R E  +A  MR A+ +            E 
Sbjct: 290 -------YAEKQDDARAERARAELMR-ALNIVYSAAFDTPAEQEL 326


>gi|19703656|ref|NP_603218.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713772|gb|AAL94517.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 728

 Score = 87.6 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDRSRIINAIKKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|119026234|ref|YP_910079.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765818|dbj|BAF39997.1| anaerobic ribonucleoside triphosphate reductase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 801

 Score = 87.6 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
               PE +K + V KR+G V  FDP  I  A+  AF  ++ K   +  R   +I+++  Q
Sbjct: 13  TENAPEMVKVL-VEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQEER---LIRDIANQ 68

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS 137
               +           IEDIQ+ VE  L++   + + R Y  YR  +   RA  +    
Sbjct: 69  VEAEIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDINE 125


>gi|238926706|ref|ZP_04658466.1| possible ribonucleoside-triphosphate reductase [Selenomonas
           flueggei ATCC 43531]
 gi|238885463|gb|EEQ49101.1| possible ribonucleoside-triphosphate reductase [Selenomonas
           flueggei ATCC 43531]
          Length = 761

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 110/345 (31%), Gaps = 44/345 (12%)

Query: 21  PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
              + +    V KR G    +D SKI  AI  A         +        I  +T+   
Sbjct: 3   KGAKSMTVTTVTKRAGNAVPYDRSKILNAITSASKEYVHPMTAL------EIDTVTKSVE 56

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  +    + +E+IQD VE  L+  GH+ I R Y+ YR+  +  R AQ H      
Sbjct: 57  EAFGDRTE----ISVEEIQDLVEKQLLAHGHYDIARRYITYRQRHAQRRRAQKHLMESYR 112

Query: 141 ----IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE----TYKNMYDG 192
                      +  D   I+ ++  + ++++    G +      VL E      +  +  
Sbjct: 113 DIFFADAVDSDLKRDNANINTDAS-MGIMLKLGAEGAKHFVDNYVLDERYATADRENFIH 171

Query: 193 LSESDLETALIFSS----RTLIE----------KEPNYAKVTARFLLEKLRREVLTTVYK 238
           + + D               L            +EPN  +  A      ++         
Sbjct: 172 IHDKDFSLITFNCCQIDLLKLFRGGFSTGHGFLREPNSIRAYASLACIAIQSNQNDMFGG 231

Query: 239 KPQKATHHEMQCLYPEYFCRYI-EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297
           +   A  + M     + F + I EE  KA L H     F        L+ E DFA     
Sbjct: 232 QSINAFDYAMADGVKKSFRKAILEEAWKALLYHIGHGYFTHEAFKKALRAELDFAVCV-- 289

Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
                  Y    + +R E  +A  MR A+ +            E 
Sbjct: 290 -------YAEKQDDARAERARAELMR-ALNIVYSAAFDTPAEQEL 326


>gi|88799250|ref|ZP_01114829.1| anaerobic ribonucleoside triphosphate reductase [Reinekea sp.
           MED297]
 gi|88778009|gb|EAR09205.1| anaerobic ribonucleoside triphosphate reductase [Reinekea sp.
           MED297]
          Length = 709

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G V  F   +I++AI+ A +A     A            L +Q  + + Q  K  
Sbjct: 5   VTKRDGHVVPFYRPRITQAILNAMIAKNQVDAP-----------LADQLSSNVEQFFKDQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             V IE +Q QVE  L+Q+    + R Y+ YR++R   R  +S  
Sbjct: 54  TRVDIEQVQQQVEAELIQAALVPVARAYIRYRQQRDLARDRRSQL 98


>gi|268678694|ref|YP_003303125.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616725|gb|ACZ11090.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 701

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KR+G    F P KI  AI KAF +                    E   T +L+  + 
Sbjct: 4   KVLKRDGTTEEFQPYKIEDAIKKAFKSEGVMYD--------------ESIYTEILKRIEK 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +  +ED QD +E  L ++ +  + R ++LYR      R 
Sbjct: 50  KRVAAVEDFQDMIEQELYKARYFDVMRSFILYRHTHKMQRE 90


>gi|23006385|ref|ZP_00048729.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 346

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 103/310 (33%), Gaps = 67/310 (21%)

Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR--- 473
             KS G+  FLK+ +  A A+  G   R+ A    ++  H D+E F+D +          
Sbjct: 12  GAKSSGLRSFLKIGDRAAGAIKSGGTTRRAAKMVIVDIDHPDIEAFIDWKVKEEQKVAVL 71

Query: 474 -------------------------------------RRTHDMNTANWIPDLFMKRVTQ- 495
                                                +R         +PD ++KRV Q 
Sbjct: 72  VTGSKVVSKHLSAVMKACIQCEAEGDACFDPERNPALKREIKAARKAMVPDAYIKRVVQF 131

Query: 496 -------------NAGWTLFSPDEVSDLHDLYG----KEFEIAYENYERQ--ADRGEIKV 536
                        +  W   +   VS  +         +F  + E  E      R   KV
Sbjct: 132 ARQGFTKIEFPVYDTDWDSEAYLTVSGQNSNNSVSLTDQFLRSVEADEDWSLTSRTTGKV 191

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
            + + A  LW K+    + +  P + F    N        G + +SN C+E        +
Sbjct: 192 SKTLKARDLWEKIGEAAWASADPGLHFNTTMNDWHTCPTGGRIRASNPCSEYMF----LD 247

Query: 597 TAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNL S NLL  +     QFD +      R    VL+  + +     ++  + ++ +R
Sbjct: 248 DTACNLASANLLTMYDRQTKQFDVEAFEHLNRLWTVVLEISVMMAQFPSKEIAELSYKYR 307

Query: 655 AIGLGLMGFQ 664
            +GLG   + 
Sbjct: 308 TLGLGYAXYS 317


>gi|313620854|gb|EFR92063.1| anaerobic ribonucleoside-triphosphate reductase [Listeria innocua
           FSL S4-378]
          Length = 311

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+E +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIELED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   ++       + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAIELEDETFLEEILLEVVSELPNKTDMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +++             +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDEIQQ-----CVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|319775018|ref|YP_004137506.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3047]
 gi|329123079|ref|ZP_08251649.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
 gi|317449609|emb|CBY85814.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3047]
 gi|327471634|gb|EGF17076.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Haemophilus aegyptius ATCC 11116]
          Length = 707

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  + F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRSEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|212715440|ref|ZP_03323568.1| hypothetical protein BIFCAT_00336 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661615|gb|EEB22190.1| hypothetical protein BIFCAT_00336 [Bifidobacterium catenulatum DSM
           16992]
          Length = 799

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           +++         V V KR+G V  FDP  I  A+  AF  ++ K   +    + +I+++ 
Sbjct: 8   AVSATVKTGTGKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQLIRDIA 64

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q    +           IEDIQ+ VE  L++   + + R Y  YR  +   RA  +   
Sbjct: 65  NQVEAEIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDIN 122

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKR 161
                    +++  D  L+  N+ +
Sbjct: 123 EAVK-----RLVNRDEALVRENANK 142


>gi|69246407|ref|ZP_00603929.1| Ribonucleoside-triphosphate reductase [Enterococcus faecium DO]
 gi|257879321|ref|ZP_05658974.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257881863|ref|ZP_05661516.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257890147|ref|ZP_05669800.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257893475|ref|ZP_05673128.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|258615727|ref|ZP_05713497.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecium DO]
 gi|260558763|ref|ZP_05830952.1| ribonucleoside-triphosphate reductase [Enterococcus faecium C68]
 gi|261207358|ref|ZP_05922045.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TC 6]
 gi|289566865|ref|ZP_06447274.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium D344SRF]
 gi|293550613|ref|ZP_06673281.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1039]
 gi|293559577|ref|ZP_06676111.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1162]
 gi|293567572|ref|ZP_06678916.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1071]
 gi|294616063|ref|ZP_06695880.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1636]
 gi|294617660|ref|ZP_06697287.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1679]
 gi|294621765|ref|ZP_06700925.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium U0317]
 gi|314937917|ref|ZP_07845233.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a04]
 gi|314941408|ref|ZP_07848301.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133C]
 gi|314948537|ref|ZP_07851917.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0082]
 gi|314951292|ref|ZP_07854346.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133A]
 gi|314992877|ref|ZP_07858278.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133B]
 gi|314998081|ref|ZP_07862969.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a01]
 gi|68195279|gb|EAN09731.1| Ribonucleoside-triphosphate reductase [Enterococcus faecium DO]
 gi|257813549|gb|EEV42307.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257817521|gb|EEV44849.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257826507|gb|EEV53133.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257829854|gb|EEV56461.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|260075222|gb|EEW63535.1| ribonucleoside-triphosphate reductase [Enterococcus faecium C68]
 gi|260078418|gb|EEW66122.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TC 6]
 gi|289161353|gb|EFD09244.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium D344SRF]
 gi|291589673|gb|EFF21477.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1071]
 gi|291591080|gb|EFF22772.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1636]
 gi|291596067|gb|EFF27333.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1679]
 gi|291598652|gb|EFF29709.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium U0317]
 gi|291603234|gb|EFF33418.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1039]
 gi|291606453|gb|EFF35853.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E1162]
 gi|313587923|gb|EFR66768.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a01]
 gi|313592681|gb|EFR71526.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133B]
 gi|313596509|gb|EFR75354.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133A]
 gi|313599831|gb|EFR78674.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133C]
 gi|313642775|gb|EFS07355.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0133a04]
 gi|313645034|gb|EFS09614.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium TX0082]
          Length = 729

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
              ++VIKR+G    FD  KI+ A++KA    +    S S    + I+ + +  V  +  
Sbjct: 17  TSQMKVIKRDGRHVDFDEQKINEALIKA---EKKIHGSLSPLTYEKIQMIADLVVQEIKS 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                  V I +IQ+ VE  L++   +++  EY+ YR +R   R+  +            
Sbjct: 74  RFAEN--VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARSKATDINFSIE----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142



 Score = 43.7 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-----------VSSK 179
            +    +  P   ++K++  DG  + F+ +++   + +A   +             + + 
Sbjct: 6   EEKTVVTQQPETSQMKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIAD 65

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           +V+ E      + +   +++  +        E E     +  R
Sbjct: 66  LVVQEIKSRFAENVKIYEIQNIVEHILLEKNEYELAEEYINYR 108


>gi|315221491|ref|ZP_07863411.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           anginosus F0211]
 gi|315189325|gb|EFU23020.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           anginosus F0211]
          Length = 740

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           E+   +L     +    + V KR+G   +FD  KI +A++KA   V          ++  
Sbjct: 2   EELMIALKEETVQGFADIYVEKRDGRRVAFDADKIYKALVKASQEVTTMT----PLLEAK 57

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           ++ +T + V  +++   +   V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+ 
Sbjct: 58  LEGITNKIVAEVIERFPAG--VKIYEIQNIVEHELLQANEYAIAESYITYRTQRDFARSK 115

Query: 132 QSHSK 136
            +   
Sbjct: 116 ATDIN 120



 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSETYKNMYDGL 193
            + +   DG  ++F++ ++   + +A   +  ++             +++E  +    G+
Sbjct: 18  DIYVEKRDGRRVAFDADKIYKALVKASQEVTTMTPLLEAKLEGITNKIVAEVIERFPAGV 77

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTAR 222
              +++  +        E     + +T R
Sbjct: 78  KIYEIQNIVEHELLQANEYAIAESYITYR 106


>gi|225351560|ref|ZP_03742583.1| hypothetical protein BIFPSEUDO_03156 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157904|gb|EEG71187.1| hypothetical protein BIFPSEUDO_03156 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 799

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
           +++         V V KR+G V  FDP  I  A+  AF  ++ K   +    + +I+++ 
Sbjct: 8   AVSATVKTGTGKVLVEKRDGRVVDFDPINIISAVKSAFADLDKKIGPQE---EQLIRDIA 64

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
            Q    +           IEDIQ+ VE  L++   + + R Y  YR  +   RA  +   
Sbjct: 65  NQVEAEIKDRY--NGPAKIEDIQNLVEHGLIEDHLYDVARTYTNYRLNKDIERAKATDIN 122

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKR 161
                    +++  D  L+  N+ +
Sbjct: 123 EAVK-----RLVNRDEALVRENANK 142


>gi|257885069|ref|ZP_05664722.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257820921|gb|EEV48055.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,231,501]
          Length = 729

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
              ++VIKR+G    FD  KI+ A++KA    +    S S    + I+ + +  V  +  
Sbjct: 17  TSQMKVIKRDGRHVDFDEQKINEALIKA---EKKIHGSLSPLTYEKIQMIADLVVQEIKS 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
                  V I +IQ+ VE  L++   +++  EY+ YR +R   R+  +            
Sbjct: 74  RFAEN--VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARSKATDINFSIE----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142



 Score = 43.7 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-----------VSSK 179
            +    +  P   ++K++  DG  + F+ +++   + +A   +             + + 
Sbjct: 6   EEKTVVTQQPETSQMKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIAD 65

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           +V+ E      + +   +++  +        E E     +  R
Sbjct: 66  LVVQEIKSRFAENVKIYEIQNIVEHILLEKNEYELAEEYINYR 108


>gi|223038337|ref|ZP_03608631.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           rectus RM3267]
 gi|222880194|gb|EEF15281.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           rectus RM3267]
          Length = 718

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 28  GVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            ++ ++KR+G    + P KI  AI KAF +   +                ++    ++ H
Sbjct: 17  EMKFILKRDGTKQEYLPYKIQDAIKKAFESESKEYD--------------DKVFLDVMGH 62

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              + ++ +EDIQD +E +L  +GH  + + ++LYR      R        D
Sbjct: 63  VFDSEVLSVEDIQDYIEKALFNAGHFDVMKSFMLYRHTHKLQREQILGLNED 114


>gi|145633716|ref|ZP_01789442.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 3655]
 gi|145635474|ref|ZP_01791174.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittAA]
 gi|229845475|ref|ZP_04465604.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 6P18H1]
 gi|229846995|ref|ZP_04467101.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 7P49H1]
 gi|144985476|gb|EDJ92297.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 3655]
 gi|145267239|gb|EDK07243.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittAA]
 gi|229810079|gb|EEP45799.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 7P49H1]
 gi|229811578|gb|EEP47278.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 6P18H1]
          Length = 707

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   ++  
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRHQDE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|308172803|ref|YP_003919508.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605667|emb|CBI42038.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus
           amyloliquefaciens DSM 7]
          Length = 264

 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 12/265 (4%)

Query: 209 LIEKEPNYAKVTARFLL-----EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
           L  K  +Y ++    ++      +  +++             + +          Y+ + 
Sbjct: 3   LTNKHASYIELNNEIMIQKDGRFQFEKDIEAVRAYFIDYVNQNTVFFHDLREKLDYLRDN 62

Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING--SRIEMPQAF 320
                       FD +       Y   F F  ++     Y+ Y L  N     +E  +  
Sbjct: 63  DYYETEFLDAYTFDEIKAVYQAAYAHKFRFPSFMSAFKFYNDYALKTNDGKKILERYEDR 122

Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDD 379
              VA+     +     +A+E+ +L+    +  STPT  N+   R  +L SCFL  V D 
Sbjct: 123 VSIVALFFGGGD---VAKAIEYVDLMMRQEYQPSTPTFLNAGRKRRGELVSCFLLEVGDS 179

Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439
           L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +
Sbjct: 180 LNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYAD 239

Query: 440 QGGKRKGAVCAYLETWHIDVEEFLD 464
           Q G+R+G+  AYL  +H D+ +FLD
Sbjct: 240 QMGQRQGSGAAYLNVFHADINDFLD 264


>gi|148825645|ref|YP_001290398.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittEE]
 gi|148715805|gb|ABQ98015.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittEE]
          Length = 708

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   ++  
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRHQDE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 59  --IDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|34763888|ref|ZP_00144791.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886336|gb|EAA23608.1| Anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 728

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDKSRIINAIKKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|90578071|ref|ZP_01233882.1| anaerobic ribonucleoside triphosphate reductase [Vibrio angustum
           S14]
 gi|90441157|gb|EAS66337.1| anaerobic ribonucleoside triphosphate reductase [Vibrio angustum
           S14]
          Length = 708

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M         GA++SI   D+ +          L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVM---------GAAQSINDMDMSEVDAMSVAEATLAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 56  EEVDIHAIQDAVENQLMVGPHKTVARAYIEYRHDRDIAREKKSRLNNE 103


>gi|238783484|ref|ZP_04627506.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           bercovieri ATCC 43970]
 gi|238715539|gb|EEQ07529.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           bercovieri ATCC 43970]
          Length = 712

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|237742481|ref|ZP_04572962.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           4_1_13]
 gi|229430129|gb|EEO40341.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           4_1_13]
          Length = 728

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD S+I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDKSRIINAIKKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|213621398|ref|ZP_03374181.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 103

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893
             + ++   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     AW
Sbjct: 14  PFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAW 73

Query: 894 LMGLKTTYYLR 904
             G+K+ YY+R
Sbjct: 74  RKGIKSLYYIR 84


>gi|89075721|ref|ZP_01162116.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium sp.
           SKA34]
 gi|89048584|gb|EAR54158.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium sp.
           SKA34]
          Length = 708

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+M         GA++SI   D+ +          L   + A
Sbjct: 5   VIKRDGCRVPFEMQRIKEAVM---------GAAQSINDMDMSEVDAMSVAEATLAQFQHA 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 56  EEVDIHAIQDAVENQLMVGPHKTVARAYIEYRHDRDIAREKKSRLNNE 103


>gi|145629056|ref|ZP_01784855.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 22.1-21]
 gi|144978559|gb|EDJ88282.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 22.1-21]
          Length = 231

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|238799269|ref|ZP_04642714.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           mollaretii ATCC 43969]
 gi|238716873|gb|EEQ08744.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           mollaretii ATCC 43969]
          Length = 712

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|55821930|ref|YP_140372.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus LMG 18311]
 gi|55823849|ref|YP_142290.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus CNRZ1066]
 gi|55737915|gb|AAV61557.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus LMG 18311]
 gi|55739834|gb|AAV63475.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus CNRZ1066]
          Length = 734

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA           +  ++  ++ +  + V  +   
Sbjct: 13  PDIKVIKRDGRMVTFDSSKIYEAILKA----SETITPITPLIETKLEEIANRVVAEINDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FSHN--IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQATDIN 116



 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS------KIVLSETYKN 188
            K    + P +K++  DG +++F+S ++   + +A   +  ++       + + +     
Sbjct: 5   EKEKVTVNPDIKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEEIANRVVAE 64

Query: 189 MYD----GLSESDLETAL 202
           + D     +   ++++ +
Sbjct: 65  INDRFSHNIKIYEIQSIV 82


>gi|283768228|ref|ZP_06341141.1| ATP cone domain protein [Bulleidia extructa W1219]
 gi|283105105|gb|EFC06476.1| ATP cone domain protein [Bulleidia extructa W1219]
          Length = 511

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII-KNLTEQTVTRLLQHNK 88
           +V KR+  +T F+  KI  AI KAF            R+   +   L  + V        
Sbjct: 3   KVKKRDNSLTEFEMDKIKTAIKKAF-------HGSKKRIHSSVLDLLAIRAVADFEDKMV 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
              ++ +EDIQD VE  L + G+ ++ + Y+LY
Sbjct: 56  DD-VISVEDIQDSVEHVLSECGYSEVAKAYILY 87


>gi|261337705|ref|ZP_05965589.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277150|gb|EFA23004.1| anaerobic ribonucleoside-triphosphate reductase [Bifidobacterium
           gallicum DSM 20093]
          Length = 798

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +    V V KR+G +  FDP  I  A+  AF   +        + + +I+++ +Q    +
Sbjct: 15  QASSKVLVEKRDGRIVDFDPINIVVAVKSAF---DDLDKEVGPQEEGMIRDIAKQVEGEI 71

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                      IEDIQ+ VE +L++   + + R Y  YR  +   RA  +          
Sbjct: 72  KARY--NGPAKIEDIQNLVEHALIEDHLYDVARTYTNYRLNKDIERAKATDINEAVK--- 126

Query: 144 KLKIMMDDGTLISFNSKR 161
             +++  D +L+  N+ +
Sbjct: 127 --RLVNKDESLVRENANK 142


>gi|15893771|ref|NP_347120.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15023339|gb|AAK78460.1|AE007562_7 Oxygen-sensitive ribonucleoside-triphosphate reductase nrdD
           [Clostridium acetobutylicum ATCC 824]
 gi|325507894|gb|ADZ19530.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 702

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 94/281 (33%), Gaps = 51/281 (18%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD +KI  AI  A  A E     +   + ++ + +  +     ++   
Sbjct: 2   LNVVKRDGRQVVFDSNKIFNAIKGA--ADEIGYDIKQSDILELTQKVIGRVEDLKIRE-- 57

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + +E++Q+ VE  L+++G+ +I   Y  YR+ER+ VR  +S           +K++
Sbjct: 58  ----ISVEEVQNLVEEVLLENGNKEIGMAYCTYRKERTKVREIKS---------DLMKVI 104

Query: 149 MDDGTLISFN----------------------------SKRLEMIVEEACSGLQDVSSKI 180
              G     +                             K++    E     L D+ S  
Sbjct: 105 EKIGIETDRDNANVGNNYSSKLLRIASESNKWHNLSAMPKKISRAHENGDIYLHDLDSYN 164

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           +           +   ++  +   +    I   P   +  A      L+         + 
Sbjct: 165 LSINCL-----HIPTKEVLQSGFNTGYGYIRP-PKRIESAAELSCILLQSTQNDMFGGQS 218

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
                ++M     E   +   E  +  +  + + ++    L
Sbjct: 219 HPDFDNDMAEFIEETRRQIRHEYEEIGVEADKLDEYVEKKL 259


>gi|227550411|ref|ZP_03980460.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TX1330]
 gi|257897185|ref|ZP_05676838.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com12]
 gi|227180312|gb|EEI61284.1| ribonucleoside-triphosphate reductase [Enterococcus faecium TX1330]
 gi|257833750|gb|EEV60171.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com12]
          Length = 729

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ A++KA    +    S S    + I+ + +  V  +    
Sbjct: 19  QMKVIKRDGRHVDFDEQKINEALIKA---EKKIHGSLSPLTYEKIQMIADLVVQEIKSRF 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V I +IQ+ VE  L++   +++  EY+ YR +R   R+  +            K+
Sbjct: 76  AEN--VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARSKATDINFSIE-----KL 128

Query: 148 MMDDGTLISFNSKR 161
           +  D T+++ N+ +
Sbjct: 129 INKDQTVVNENANK 142



 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-----------VSSK 179
            +    +  P A ++K++  DG  + F+ +++   + +A   +             + + 
Sbjct: 6   EEKTVVTQQPEAHQMKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIAD 65

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           +V+ E      + +   +++  +        E E     +  R
Sbjct: 66  LVVQEIKSRFAENVKIYEIQNIVEHILLEKNEYELAEEYINYR 108


>gi|257888440|ref|ZP_05668093.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257899183|ref|ZP_05678836.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com15]
 gi|293572067|ref|ZP_06683078.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E980]
 gi|257824494|gb|EEV51426.1| ribonucleoside-triphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257837095|gb|EEV62169.1| ribonucleoside-triphosphate reductase [Enterococcus faecium Com15]
 gi|291607852|gb|EFF37163.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium E980]
          Length = 729

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ A++KA    +    S S    + I+ + +  V  +    
Sbjct: 19  QMKVIKRDGRHVDFDEQKINEALIKA---EKKIHGSLSPLTYEKIQMIADLVVQEIKSRF 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V I +IQ+ VE  L++   +++  EY+ YR +R   R+  +            K+
Sbjct: 76  AEN--VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARSKATDINFSIE-----KL 128

Query: 148 MMDDGTLISFNSKR 161
           +  D T+++ N+ +
Sbjct: 129 INKDQTVVNENANK 142



 Score = 43.7 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-----------VSSK 179
            +    +  P A ++K++  DG  + F+ +++   + +A   +             + + 
Sbjct: 6   EEKTVVTQQPEAHQMKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIAD 65

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           +V+ E      + +   +++  +        E E     +  R
Sbjct: 66  LVVQEIKSRFAENVKIYEIQNIVEHILLEKNEYELAEEYINYR 108


>gi|262363220|gb|ACY59941.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           D106004]
          Length = 712

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDIREIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIQGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|22124647|ref|NP_668070.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           KIM 10]
 gi|45440484|ref|NP_992023.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594871|ref|YP_069062.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808947|ref|YP_652863.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Antiqua]
 gi|108810799|ref|YP_646566.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|145600518|ref|YP_001164594.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Pestoides F]
 gi|153949602|ref|YP_001402510.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997506|ref|ZP_02022606.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CA88-4125]
 gi|162421738|ref|YP_001608327.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Angola]
 gi|165925838|ref|ZP_02221670.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936718|ref|ZP_02225285.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010082|ref|ZP_02230980.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214312|ref|ZP_02240347.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398618|ref|ZP_02304142.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420614|ref|ZP_02312367.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423681|ref|ZP_02315434.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469609|ref|ZP_02334313.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           FV-1]
 gi|170025906|ref|YP_001722411.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893881|ref|YP_001870993.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930468|ref|YP_002348343.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           CO92]
 gi|229839102|ref|ZP_04459261.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896590|ref|ZP_04511757.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides A]
 gi|229899665|ref|ZP_04514806.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901001|ref|ZP_04516125.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|270489180|ref|ZP_06206254.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM D27]
 gi|294505158|ref|YP_003569220.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Z176003]
 gi|21957455|gb|AAM84321.1|AE013675_1 anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM 10]
 gi|45435341|gb|AAS60900.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51588153|emb|CAH19759.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774447|gb|ABG16966.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Yersinia pestis
           Nepal516]
 gi|108780860|gb|ABG14918.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Yersinia pestis
           Antiqua]
 gi|115349079|emb|CAL22042.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CO92]
 gi|145212214|gb|ABP41621.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides F]
 gi|149289143|gb|EDM39223.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           CA88-4125]
 gi|152961097|gb|ABS48558.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354553|gb|ABX88501.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Angola]
 gi|165915367|gb|EDR33977.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922450|gb|EDR39627.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990989|gb|EDR43290.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204544|gb|EDR49024.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961420|gb|EDR57441.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051122|gb|EDR62530.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057851|gb|EDR67597.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752440|gb|ACA69958.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis YPIII]
 gi|186696907|gb|ACC87536.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           pseudotuberculosis PB1/+]
 gi|229682340|gb|EEO78432.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Nepal516]
 gi|229687157|gb|EEO79232.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695468|gb|EEO85515.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700368|gb|EEO88400.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           Pestoides A]
 gi|262367151|gb|ACY63708.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           D182038]
 gi|270337684|gb|EFA48461.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           KIM D27]
 gi|294355617|gb|ADE65958.1| anaerobic ribonucleoside triphosphate reductase [Yersinia pestis
           Z176003]
 gi|320016657|gb|ADW00229.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 712

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDIREIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIQGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|319896488|ref|YP_004134681.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3031]
 gi|317431990|emb|CBY80338.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae F3031]
          Length = 707

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASHYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|293379602|ref|ZP_06625739.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium PC4.1]
 gi|292641751|gb|EFF59924.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecium PC4.1]
          Length = 729

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 10/134 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    FD  KI+ A++KA    +    S S    + I+ + +  V  +    
Sbjct: 19  QMKVIKRDGRHVDFDEQKINEALIKA---EKKIHGSLSPLTYEKIQMIADLVVQEIKSRF 75

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V I +IQ+ VE  L++   +++  EY+ YR +R   R+  +            K+
Sbjct: 76  AEN--VKIYEIQNIVEHILLEKNEYELAEEYINYRTKRDFARSKATDINFSIE-----KL 128

Query: 148 MMDDGTLISFNSKR 161
           +  D T+++ N+ +
Sbjct: 129 INKDQTVVNENANK 142



 Score = 43.7 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-----------VSSK 179
            +    +  P A ++K++  DG  + F+ +++   + +A   +             + + 
Sbjct: 6   EEKTVVTQQPEAHQMKVIKRDGRHVDFDEQKINEALIKAEKKIHGSLSPLTYEKIQMIAD 65

Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           +V+ E      + +   +++  +        E E     +  R
Sbjct: 66  LVVQEIKSRFAENVKIYEIQNIVEHILLEKNEYELAEEYINYR 108


>gi|149276406|ref|ZP_01882550.1| anaerobic ribonucleoside triphosphate reductase [Pedobacter sp.
           BAL39]
 gi|149232926|gb|EDM38301.1| anaerobic ribonucleoside triphosphate reductase [Pedobacter sp.
           BAL39]
          Length = 706

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 14/118 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   SF+  KI  AI KAF +V                +L  + ++ L++  K A
Sbjct: 7   VIKRNGSFQSFESYKIEDAIRKAFSSVNVPH----------QHDLVVRVLSLLIRKEKWA 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               +E+IQD +E +L  +G  ++TR ++ YR  R   RA  +    D       + +
Sbjct: 57  ----VEEIQDVIERTLFDAGLFEVTRSFMRYRHTRKMQRAHSNGLNDDTTYIDSTQAI 110


>gi|237740150|ref|ZP_04570631.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           2_1_31]
 gi|229422167|gb|EEO37214.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           2_1_31]
          Length = 728

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  F   +I  AI K F+       +       +I+ +  Q          S
Sbjct: 3   RVIKRDGSVVEFSKDRIINAISKTFI------QASREPNMKLIEKIATQVEE-----LPS 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E+IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 52  -KVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIRDREKGIYRQISELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|238760373|ref|ZP_04621514.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia aldovae
           ATCC 35236]
 gi|238701433|gb|EEP94009.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia aldovae
           ATCC 35236]
          Length = 712

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV+   A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVDVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  + H   +        +   
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGHLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|284007690|emb|CBA73439.1| anaerobic ribonucleoside-triphosphate reductase [Arsenophonus
           nasoniae]
          Length = 710

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 13/108 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A+M+A         +  I        +      +L       
Sbjct: 5   VIKRDGCQVLFDKNRIKEAVMRA---------ATGICDDQYCAVVASVVEQQLGNR---- 51

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR ER   R  +S    +
Sbjct: 52  QTVDIHEIQDAVENQLMAGRYKDLARNYIAYRHERDIAREQRSRLTHE 99


>gi|240146770|ref|ZP_04745371.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis L1-82]
 gi|257201054|gb|EEU99338.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis L1-82]
          Length = 729

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI +A  +V         ++ +I KN+  +     ++ + 
Sbjct: 1   MKIIKRSGMEDTFDIKKIEAAIRRANNSVIDYEKLTDKQIDEISKNV--EVACENMKRSP 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           S     +E+IQD VE  +M      + R Y+ YR ++  VR + S  +    +  
Sbjct: 59  S-----VEEIQDMVENQIMNQRAFNVARNYITYRYKQELVRKSNSTDEQILSLLE 108


>gi|54302122|ref|YP_132115.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum SS9]
 gi|46915543|emb|CAG22315.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Photobacterium profundum SS9]
          Length = 711

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI+ A  +V+          +    ++ +  +++ +    SA
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVDEVDVEAMN--EAYAASVADGVLSQFM----SA 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 59  EEVEIHAIQDAVENHLMVGPHKAVARAYIEYRHDRDIARDKKSLLNNE 106



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-----LSESDLETA 201
           ++  DG  + FN++R++  +  A   + +V  + +      ++ DG     +S  ++E  
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVDEVDVEAMNEAYAASVADGVLSQFMSAEEVEIH 64

Query: 202 LIFSSRT 208
            I  +  
Sbjct: 65  AIQDAVE 71


>gi|302386691|ref|YP_003822513.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
 gi|302197319|gb|ADL04890.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           saccharolyticum WM1]
          Length = 709

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 73/165 (44%), Gaps = 23/165 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  +D  KI  AI KA   VE    +     +++I  + +   +       
Sbjct: 2   IKVQKRDGRIVEYDREKIVTAIGKANAEVEASEQAG----EEMIDGILDFVESHAED--- 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              ++++E IQD +E  L+    + ++++Y++YR +R+ +R A +  +S   +     I 
Sbjct: 55  ---VINVETIQDMIESGLVNRNKYTLSKKYIIYRYQRALLRKANTTDESILKL-----IK 106

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
            ++  L   NS +  +        L       +  E  +++   +
Sbjct: 107 NENKELAEENSNKNTI--------LASTQRDYIAGEVSRDLTKRM 143


>gi|68248626|ref|YP_247738.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 86-028NP]
 gi|68056825|gb|AAX87078.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae 86-028NP]
          Length = 707

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +   +   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTRH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKVVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|320541289|ref|ZP_08040588.1| putative ribonucleoside diphosphate reductase 1, alpha subunit
           [Serratia symbiotica str. Tucson]
 gi|320028648|gb|EFW11028.1| putative ribonucleoside diphosphate reductase 1, alpha subunit
           [Serratia symbiotica str. Tucson]
          Length = 81

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L +   DG     N  ++  +++ A  GL ++S   V   ++   YDG+  +D+   +I
Sbjct: 4   SLLVTKRDGRKERINLDKIHRVIDWAAEGLNNISVSQVELRSHIQFYDGIKTADIHETII 63

Query: 204 FSSRTLIEKE-PNYAKVT 220
            ++  LI ++ P+Y  + 
Sbjct: 64  KAAADLISRDAPDYQYLA 81


>gi|15602805|ref|NP_245877.1| anaerobic ribonucleoside triphosphate reductase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721261|gb|AAK03024.1| NrdD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 713

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  AI KA  AV        I  +     + +Q    +       
Sbjct: 6   VIKRDGSRTGFEIQRIINAIKKAAQAVN-------IEDERYCHTMGQQVCNDIFTRY--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I  IQ  VE +LM   + +I R Y+ YR +R   R  +S    +        I   
Sbjct: 57  QEIDISHIQKIVENTLMAGKYPEIARAYIEYRHDRDLAREKRSQLTKEIEGL----IQQS 112

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K     
Sbjct: 113 NVELLNENANKDAKVIPTQRDLLAGIVAKHYAKR 146


>gi|312262459|gb|ADQ52754.1| NrdD anaerobic NTP reductase large subunit [Aeromonas phage PX29]
          Length = 704

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G +  FD S I  AI  +  ++        I       + TE  V +L+  + 
Sbjct: 1   MQVQKRDGRIVDFDQSFIETAISNSLQSI-------GITDPTFPHHATEAVVRKLIGRS- 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              +V I +IQ  VE +LM+S +  + R Y+ YR +R   R 
Sbjct: 53  ---MVTIGEIQHVVEDTLMRSRYPAVARAYIEYRYDRDVARD 91


>gi|302873254|ref|YP_003841887.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulovorans 743B]
 gi|307688579|ref|ZP_07631025.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           cellulovorans 743B]
 gi|302576111|gb|ADL50123.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           cellulovorans 743B]
          Length = 703

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KI++AI ++  + E     +     D    LT+  +T + +     
Sbjct: 4   VVKRDGRKVKFNSDKITKAIKRS--SEELGYDLKESEAID----LTQGIITSIEEE--DL 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             V +E IQ+ VE  L + G+  I++ Y  YR ER+ VR  +S
Sbjct: 56  EEVTVEQIQNFVEKVLTEKGYTNISKSYSAYRNERTRVRELKS 98



 Score = 46.0 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            L ++  DG  + FNS ++   ++ +   L     +    +  + +   + E DLE   +
Sbjct: 1   MLYVVKRDGRKVKFNSDKITKAIKRSSEELGYDLKESEAIDLTQGIITSIEEEDLEEVTV 60

Query: 204 FSSRTLIEK---EPNYAKVT 220
              +  +EK   E  Y  ++
Sbjct: 61  EQIQNFVEKVLTEKGYTNIS 80


>gi|90413429|ref|ZP_01221421.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum 3TCK]
 gi|90325517|gb|EAS41994.1| anaerobic ribonucleoside triphosphate reductase [Photobacterium
           profundum 3TCK]
          Length = 711

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI+ A  +V+       + V+ + +         +L    S 
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVD------EVDVEAMSEAYAASVADGVLSQFMSV 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM   H  + R Y+ YR +R   R  +S   ++
Sbjct: 59  EEVEIHAIQDAVENHLMVGPHKAVARAYIEYRHDRDIARDKKSLLNNE 106



 Score = 44.1 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-----LSESDLETA 201
           ++  DG  + FN++R++  +  A   + +V  + +      ++ DG     +S  ++E  
Sbjct: 5   VIKRDGCRVPFNTQRIKEAILGAAQSVDEVDVEAMSEAYAASVADGVLSQFMSVEEVEIH 64

Query: 202 LIFSSRT 208
            I  +  
Sbjct: 65  AIQDAVE 71


>gi|312866777|ref|ZP_07726990.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parasanguinis F0405]
 gi|311097560|gb|EFQ55791.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           parasanguinis F0405]
          Length = 739

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI     KA +    +  S +  ++  ++ + ++ +  +L+   + 
Sbjct: 20  VEKRDGRRVQFDVEKI----YKALLKATEEVTSLTPVMEAKLEAIVDRVIAEILERFPNG 75

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+Q+  + I   Y+ YR +R   R+  +   
Sbjct: 76  --VKIYEIQNVVEHELLQANEYAIAESYITYRTQRDFERSKATDIN 119



 Score = 41.8 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSET 185
           +    + P + +   DG  + F+ +++   + +A   +  ++             V++E 
Sbjct: 9   EEKLRMVPDIFVEKRDGRRVQFDVEKIYKALLKATEEVTSLTPVMEAKLEAIVDRVIAEI 68

Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +   +G+   +++  +        E     + +T R
Sbjct: 69  LERFPNGVKIYEIQNVVEHELLQANEYAIAESYITYR 105


>gi|52424688|ref|YP_087825.1| anaerobic ribonucleoside triphosphate reductase [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306740|gb|AAU37240.1| NrdD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 711

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G   SF+  +I  AI KA         +  I  +     +++Q    + QHN++ 
Sbjct: 9   IIKRDGSRASFEIQRIINAIKKA-------AKAVGIDDERFCHLVSQQVFDEIFQHNQNE 61

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    D  
Sbjct: 62  --IDISRIQQFVENKLMASAYPQVARAYIEYRHDRDLAREKRSQLTKDIE 109


>gi|291536646|emb|CBL09758.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis M50/1]
 gi|291541014|emb|CBL14125.1| anaerobic ribonucleoside-triphosphate reductase [Roseburia
           intestinalis XB6B4]
          Length = 729

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKR+G   +FD  KI  AI +A  +V         ++ +I KN+  +     ++ + 
Sbjct: 1   MKIIKRSGMEDTFDIKKIESAIRRANNSVIDYEKLTDKQIDEISKNV--EVACENMKRSP 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           S     +E+IQD VE  +M      + R Y+ YR ++  VR + S  +    +  
Sbjct: 59  S-----VEEIQDMVENQIMNQRAFNVARNYITYRYKQELVRKSNSTDEQILSLLE 108


>gi|329769428|ref|ZP_08260841.1| hypothetical protein HMPREF0433_00605 [Gemella sanguinis M325]
 gi|328838998|gb|EGF88589.1| hypothetical protein HMPREF0433_00605 [Gemella sanguinis M325]
          Length = 294

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 13/136 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           IK + VIKR+G V  FDP KI +AI KA   V G+  S +      I N+ ++ +  +  
Sbjct: 18  IKNLLVIKRDGRVVKFDPDKIYKAIEKAVFKVFGEKHSVN------IDNIVDKVILEISN 71

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             K    + I ++Q+ VE +L+ SG   I  EYV YR +R   R                
Sbjct: 72  RFKDN--IKIYEVQNIVEHTLLTSGEEAIYEEYVGYRSKRDIEREHSLDINIAIE----- 124

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D  +++ N+ +
Sbjct: 125 KLVNRDENVVNENANK 140



 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEA---------CSGLQDVSSKIVLSETYKNMYDGLSE 195
           L ++  DG ++ F+  ++   +E+A            + ++    V+ E      D +  
Sbjct: 21  LLVIKRDGRVVKFDPDKIYKAIEKAVFKVFGEKHSVNIDNI-VDKVILEISNRFKDNIKI 79

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTAR 222
            +++  +  +  T  E+      V  R
Sbjct: 80  YEVQNIVEHTLLTSGEEAIYEEYVGYR 106


>gi|238750152|ref|ZP_04611655.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia rohdei
           ATCC 43380]
 gi|238711696|gb|EEQ03911.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia rohdei
           ATCC 43380]
          Length = 712

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV          V  ++               ++ 
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDTDYCATVARVVAQ-----------TMENQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ+ VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  AKVDIRDIQNAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|50119334|ref|YP_048501.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609860|emb|CAG73294.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 712

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A         +  +   D    +         Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERA-------AHAAGVNDADYCATVACAV----AQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQD VE  LM   + K+ R Y+ YR +R   R        +
Sbjct: 54  SRVDIRDIQDAVENLLMSGNYKKLARTYIEYRHDRDIARERHGRLNQE 101


>gi|312279281|gb|ADQ63938.1| Ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus ND03]
          Length = 734

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA           +  ++  ++ +  + V  +   
Sbjct: 13  PDIKVIKRDGRMVTFDSSKIYEAILKA----SETITPITPLIETKLEGIANRVVAEINDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FSHN--IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQATDIN 116



 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    + P +K++  DG +++F+S ++   + +A   +  ++             V++E
Sbjct: 5   EKEKVTVNPDIKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEGIANRVVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
                   +   ++++ +
Sbjct: 65  INDRFSHNIKIYEIQSIV 82


>gi|116628629|ref|YP_821248.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           thermophilus LMD-9]
 gi|116101906|gb|ABJ67052.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Streptococcus
           thermophilus LMD-9]
          Length = 734

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA           +  ++  ++ +  + V  +   
Sbjct: 13  PDIKVIKRDGRMVTFDSSKIYEAILKA----SETITPITPLIETKLEGIANRVVAEINDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FSHN--IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQATDIN 116



 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    + P +K++  DG +++F+S ++   + +A   +  ++             V++E
Sbjct: 5   EKEKVTVNPDIKVIKRDGRMVTFDSSKIYEAILKASETITPITPLIETKLEGIANRVVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
                   +   ++++ +
Sbjct: 65  INDRFSHNIKIYEIQSIV 82


>gi|76786720|ref|YP_330615.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae A909]
 gi|77406616|ref|ZP_00783662.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae H36B]
 gi|77411839|ref|ZP_00788173.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae CJB111]
 gi|76561777|gb|ABA44361.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae A909]
 gi|77162116|gb|EAO73093.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae CJB111]
 gi|77174775|gb|EAO77598.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae H36B]
          Length = 723

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD  KI  A++KA   V       S  V+  ++ + +  +  +   
Sbjct: 4   SDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKM----SPLVEAKLEMIADHVIAEIYNR 59

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
            K    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +            K
Sbjct: 60  FKDN--IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQATDINFSIG-----K 112

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 113 LINKDQTVVNENANK 127



 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSETYKNMY 190
               +K++  DG L+SF+  ++   + +A + +  +S             V++E Y    
Sbjct: 2   TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFK 61

Query: 191 DGLSESDLETAL 202
           D +   +++  +
Sbjct: 62  DNIKIYEIQNIV 73


>gi|22538221|ref|NP_689072.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae 2603V/R]
 gi|77412973|ref|ZP_00789176.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 515]
 gi|22535133|gb|AAN00945.1|AE014286_8 anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 2603V/R]
 gi|77160985|gb|EAO72093.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae 515]
          Length = 723

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD  KI  A++KA   V       S  V+  ++ + +  +  +   
Sbjct: 4   SDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKM----SPLVEAKLEMIADHVIAEIYNR 59

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
            K    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +            K
Sbjct: 60  FKDN--IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQATDINFSIG-----K 112

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 113 LINKDQTVVNENANK 127



 Score = 38.7 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSETYKNMY 190
               +K++  DG L+SF+  ++   + +A + +  +S             V++E Y    
Sbjct: 2   TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFK 61

Query: 191 DGLSESDLETAL 202
           D +   +++  +
Sbjct: 62  DNIKIYEIQNIV 73


>gi|301168668|emb|CBW28259.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus
           influenzae 10810]
          Length = 707

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I  +     + ++    +  H+   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFIHH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|294661640|ref|YP_003580093.1| NrdD anaerobic ribonucleotide reductase subunit [Klebsiella phage
           KP15]
 gi|292660801|gb|ADE35049.1| NrdD anaerobic ribonucleotide reductase subunit [Klebsiella phage
           KP15]
          Length = 707

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G +  FD  KI  A+ KA     G   +                +  L    +
Sbjct: 1   MKVEKRDGTIVDFDQEKIRNAVYKA-----GGTMTDEDS----------AIMLVLRSQIR 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + I  IQ+ VE SLM++    + R Y+ YR +R   R        D  
Sbjct: 46  DGKAMKISQIQELVEESLMKTNP-TVARAYIEYRHDRDIAREQNGKLFRDIK 96



 Score = 44.5 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETAL 202
           +K+   DGT++ F+ +++   V +A   + D     ++      + DG  +  S ++  +
Sbjct: 1   MKVEKRDGTIVDFDQEKIRNAVYKAGGTMTDED-SAIMLVLRSQIRDGKAMKISQIQELV 59

Query: 203 IFS--------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
             S        +R  IE   +     AR    KL R++   +    ++ T+  
Sbjct: 60  EESLMKTNPTVARAYIEYRHDRDI--AREQNGKLFRDIKGLMTLSNKELTNEN 110


>gi|319746024|gb|EFV98305.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus agalactiae ATCC 13813]
          Length = 732

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD  KI  A++KA   V       S  V+  ++ + +  +  +   
Sbjct: 13  SDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKM----SPLVEAKLEMIADHVIAEIYNR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
            K    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FKDN--IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQATDINFSIG-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 38.7 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSETYKNM 189
                +K++  DG L+SF+  ++   + +A + +  +S             V++E Y   
Sbjct: 10  TTESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRF 69

Query: 190 YDGLSESDLETAL 202
            D +   +++  +
Sbjct: 70  KDNIKIYEIQNIV 82


>gi|313625297|gb|EFR95116.1| anaerobic ribonucleoside-triphosphate reductase [Listeria innocua
           FSL J1-023]
          Length = 196

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+E +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAIELED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  TDMTIDEIQQCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125



 Score = 38.3 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 16/129 (12%)

Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS---KIVLSETYKNMYD--GLS 194
               +  ++  DG   +F+  ++   VE +   ++       + +L E    + +   ++
Sbjct: 4   EQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAIELEDETFLEEILLEVVSELPNKTDMT 63

Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR-----REVLTTVYKKPQKATHHEMQ 249
             +++             +  Y  V  R  +E        RE +T ++K  +K    +  
Sbjct: 64  IDEIQQ-----CVENTLMKSTYPDVA-RAYIEYRHDRDHERENITDMHKSVEKLLQKDKT 117

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 118 VVNENANKD 126


>gi|260497987|ref|ZP_05816102.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_33]
 gi|260196452|gb|EEW93984.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_33]
          Length = 728

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                 
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNKK 110

Query: 150 -------DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
                   D   IS     L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRD-LLAGISSRDYYLNKIVPEHIKLAHIKG---EIHLHDLDYLL 166


>gi|182420124|ref|ZP_02951358.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237669565|ref|ZP_04529545.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376161|gb|EDT73748.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237655009|gb|EEP52569.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 702

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KI++AI  +  A E     +   V   +  +T+       +     
Sbjct: 4   VVKRDGREVEFNSDKIAQAIKGS--ASEIGLTLKESEVLTTVAKVTDYIEIEYKKS---- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQ+ VE +L   GH  I   Y  YR+ER+ VR  +S
Sbjct: 58  --ITVEQIQNFVERALQNQGHIDIAVAYSTYRKERTKVREIKS 98


>gi|223986900|ref|ZP_03636877.1| hypothetical protein HOLDEFILI_04200 [Holdemania filiformis DSM
           12042]
 gi|223961156|gb|EEF65691.1| hypothetical protein HOLDEFILI_04200 [Holdemania filiformis DSM
           12042]
          Length = 811

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G    F   KI   I K F  V          V+ ++     Q     L   
Sbjct: 56  EIEVIKRDGRTVRFHKEKIQNVIEKGFANV--GTHCSEENVRKVLNRALNQIEAANLPQ- 112

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                + IE IQDQVE + ++ G  +  + +  YR++R+  R 
Sbjct: 113 -----IEIEKIQDQVEEAFVEEGFIEEYKAFKNYRQKRAVARD 150


>gi|25012079|ref|NP_736474.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           agalactiae NEM316]
 gi|24413623|emb|CAD47700.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 732

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD  KI  A++KA   V       S  V+  ++ + +  +  +   
Sbjct: 13  SDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKM----SPLVEAKLEMIADHVIAEIYNR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
            K    + I +IQ+ VE  L+++  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FKDN--IKIYEIQNIVEHKLLEANEYAIAQEYINYRTQRDFERSQATDINFSIG-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS------KIVLSETYKNMY---- 190
               +K++  DG L+SF+  ++   + +A + +  +S       +++       +Y    
Sbjct: 11  TESDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKMSPLVEAKLEMIADHVIAEIYNRFK 70

Query: 191 DGLSESDLETAL 202
           D +   +++  +
Sbjct: 71  DNIKIYEIQNIV 82


>gi|150014960|ref|YP_001307214.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901425|gb|ABR32258.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 702

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KI++AI  +  A E     +  +V D +  +         +     
Sbjct: 4   VVKRDGREVEFNSDKIAQAIKGS--ASEIGLNLKESQVLDTVHKVITYIEEEYKK----- 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
             + +E IQ+ VE +L   GH  I   Y  YR ER+ VR  +S
Sbjct: 57  -TITVEQIQNFVEKALRNEGHKDIAVAYSAYRRERTKVRDIKS 98


>gi|227115429|ref|ZP_03829085.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 712

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A         +  +   D    +         Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERA-------AHAAGVNDADYCATVACAV----AQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   + K+ R Y+ YR +R   R        +
Sbjct: 54  SRVDIREIQDAVENLLMSGNYKKLARTYIEYRHDRDIARERHGRLNQE 101


>gi|253686765|ref|YP_003015955.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753343|gb|ACT11419.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 712

 Score = 85.3 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A         +  +   D    +         Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERA-------AHAAGVNDADYCATVACAV----AQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   + K+ R Y+ YR +R   R        +
Sbjct: 54  SRVDIREIQDAVENLLMSGNYKKLARTYIEYRHDRDIARERHGRLNQE 101


>gi|145298237|ref|YP_001141078.1| anaerobic ribonucleoside triphosphate reductase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851009|gb|ABO89330.1| anaerobic ribonucleoside-triphosphate reductase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 705

 Score = 85.3 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+   I+ A+ +A  AV                 L E+    + Q  +  
Sbjct: 5   VIKRDGCRAPFNAQLIAEAVGRAAEAVSQANP-----------TLGERVAAAVTQELEGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ++VE  LM S    I R Y+ YR +R   R A+     +
Sbjct: 54  GEVDIHEIQNRVENHLMASDDKAIARAYIEYRHDRDQAREARGRLAQE 101


>gi|319940096|ref|ZP_08014450.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           anginosus 1_2_62CV]
 gi|319810810|gb|EFW07137.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           anginosus 1_2_62CV]
          Length = 736

 Score = 85.3 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G   +FD  KI +A++KA   V          ++  ++ +T + V  ++    + 
Sbjct: 17  VEKRDGRRVAFDADKIYKALVKASQEVTTMT----PLLEAKLEGITNKIVAEVISRFPAG 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 73  --VKIYEIQNIVEHELLNANEYAIAESYITYRTQRDFARSKATDIN 116



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSETYKNMYDGL 193
            + +   DG  ++F++ ++   + +A   +  ++             +++E       G+
Sbjct: 14  DIYVEKRDGRRVAFDADKIYKALVKASQEVTTMTPLLEAKLEGITNKIVAEVISRFPAGV 73

Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTAR 222
              +++  +        E     + +T R
Sbjct: 74  KIYEIQNIVEHELLNANEYAIAESYITYR 102


>gi|291333308|gb|ADD93015.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S04-C246]
          Length = 440

 Score = 85.3 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL- 728
           + IPY       I       +   + + S E+A   G Y  ++ +         +     
Sbjct: 1   MGIPYDDERGYAICGAMTAIMCGESYATSAEMASILGPYPDYERNKEHMLKVMRNHRRAA 60

Query: 729 -----------------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
                            +   +    +   +R  WD   +  +  G RN+    IAPT T
Sbjct: 61  YGTNDDEYEGLTVKPMSIDSKKCPKDLLEAARNAWDVALREGEEHGYRNAQTTVIAPTGT 120

Query: 772 IANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829
           I  + G  +  ++P +  + Y      G   +VNS + N LK+    D+      +Y  G
Sbjct: 121 IGLVMGADTTGVEPQFSLVQYKTLAGGGSLRIVNSGVSNALKRLGYSDKETTEIEQYITG 180

Query: 830 --SIGNIERIPDD 840
             ++ N   +  +
Sbjct: 181 TKTLSNCPHLSAE 193



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 12/117 (10%)

Query: 803 NSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATA--------FEID 852
           N F  + L    L  + +   +D  +    I     + ++   +   A          ID
Sbjct: 245 NPFF-DVLSHMGLSSDEIDTANDYVFGYNMIEGAPGLKEEHLAVFDCATPCGKYGKRSID 303

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908
               +   +  Q +I  A S  + +    + +++   Y  + L   K     R  S 
Sbjct: 304 WKAHVMMMAAAQPFISGAISKTINMPSNSTVEEIRDAYNLSHLTMNKACAVYRDCSK 360


>gi|238793046|ref|ZP_04636675.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           intermedia ATCC 29909]
 gi|238727646|gb|EEQ19171.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           intermedia ATCC 29909]
          Length = 712

 Score = 85.3 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|228478027|ref|ZP_04062638.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
 gi|228250207|gb|EEK09460.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
          Length = 734

 Score = 85.3 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD SKI  AI+KA  A+         +++ I   +  +   R  Q+
Sbjct: 13  PDIKVIKRDGRMVVFDSSKIYEAILKASEAITPITPLIEAKLEGIANRIVAEINDRFTQN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 73  ------IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQATDIN 116



 Score = 43.7 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    I P +K++  DG ++ F+S ++   + +A   +  ++             +++E
Sbjct: 5   EKEKVTINPDIKVIKRDGRMVVFDSSKIYEAILKASEAITPITPLIEAKLEGIANRIVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
                   +   ++++ +
Sbjct: 65  INDRFTQNIKIYEIQSIV 82


>gi|315633672|ref|ZP_07888962.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
 gi|315477714|gb|EFU68456.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aggregatibacter segnis ATCC 33393]
          Length = 708

 Score = 85.3 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV+           DI + ++        Q     
Sbjct: 6   VIKRDGSRIGFEIQRIINAIKKAAQAVDI---QDERFCHDIAQKVSNDIFAHHQQE---- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR ER   R  +S    +  
Sbjct: 59  --IDISHIQKIVENHLMASQYPQIARAYIEYRHERDMAREKRSQLTKEIE 106


>gi|259047272|ref|ZP_05737673.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           adiacens ATCC 49175]
 gi|259036048|gb|EEW37303.1| anaerobic ribonucleoside-triphosphate reductase [Granulicatella
           adiacens ATCC 49175]
          Length = 732

 Score = 85.3 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           +++K + V KR+G    F   KI RAI KA             + +  +  + ++ +  +
Sbjct: 4   QELKTLLVTKRDGREVEFQKEKIERAIFKA---ETELNGEMDAKREAELNRIVDEVLQEI 60

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
            +       + I +IQ  +E  L++ G  ++ + Y+ YR +R   R  Q
Sbjct: 61  SRRFSE--TIQIYEIQSIIEHFLIEDGESELAQAYISYRVDRDLRRKNQ 107


>gi|238787629|ref|ZP_04631427.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           frederiksenii ATCC 33641]
 gi|238724416|gb|EEQ16058.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           frederiksenii ATCC 33641]
          Length = 712

 Score = 84.9 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|318607315|emb|CBY28813.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 712

 Score = 84.9 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|257869794|ref|ZP_05649447.1| ribonucleoside-triphosphate reductase [Enterococcus gallinarum EG2]
 gi|257803958|gb|EEV32780.1| ribonucleoside-triphosphate reductase [Enterococcus gallinarum EG2]
          Length = 732

 Score = 84.9 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++  ++++KR+G +  FD  KI  A++KA   V+G     S    + I  + E     + 
Sbjct: 16  QLTQLKIVKRDGRLVDFDDQKIYDALVKAQRKVKG---ELSPLDHERILEIVEGIDHEIA 72

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +       V I +IQ+ VE  L+    + +  EY+ YR  R   R+  +   
Sbjct: 73  ERFTKN--VKIYEIQNIVEHILLAKNEYALAEEYINYRTRRDFERSKATDIN 122


>gi|257452311|ref|ZP_05617610.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           3_1_5R]
 gi|317058854|ref|ZP_07923339.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_5R]
 gi|313684530|gb|EFS21365.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           3_1_5R]
          Length = 734

 Score = 84.9 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTVTRLLQHNK 88
           +VIKR+G V  FD  +I  AI  AF          S  + +++I  +  Q          
Sbjct: 4   KVIKRDGTVIDFDAKRIVHAISMAF-------KQNSRTIPEELISKIAHQIENI------ 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAP 143
              I+ +E+IQD V   LM S    I   Y  YR  ++++R  +                
Sbjct: 51  ENKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNE 110

Query: 144 KLKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
            L +   +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 111 SLLVENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKG---EIHLHDLDYLL 167


>gi|257458936|ref|ZP_05624056.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           gracilis RM3268]
 gi|257443640|gb|EEV18763.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           gracilis RM3268]
          Length = 702

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 14/109 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IKR+G    F   KI  AI KA+ +V  +            + + +  ++ ++  +K 
Sbjct: 3   KIIKRDGSFQEFQSYKIKDAIKKAYKSVGSEFD----------EKVFDNVMSAIVFKDK- 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              + +EDIQD +E  L ++G   + + +++YR      R      + D
Sbjct: 52  ---LSVEDIQDLIEKKLFEAGDFAVLKSFMIYRHTHKMQREHILGLEED 97


>gi|168177426|ref|ZP_02612090.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum NCTC 2916]
 gi|182670415|gb|EDT82389.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum NCTC 2916]
          Length = 713

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G    FD  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  + F+  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|153938050|ref|YP_001389457.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum F str. Langeland]
 gi|152933946|gb|ABS39444.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum F str. Langeland]
 gi|295317561|gb|ADF97938.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum F str. 230613]
          Length = 713

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G    FD  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  + F+  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|148378101|ref|YP_001252642.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933790|ref|YP_001382500.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153935349|ref|YP_001386052.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A str. Hall]
 gi|148287585|emb|CAL81650.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929834|gb|ABS35334.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931263|gb|ABS36762.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A str. Hall]
          Length = 713

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G    FD  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  + F+  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|170756294|ref|YP_001779720.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum B1 str. Okra]
 gi|169121506|gb|ACA45342.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum B1 str. Okra]
          Length = 713

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G    FD  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 42.5 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  + F+  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|257465898|ref|ZP_05630209.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917054|ref|ZP_07913294.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313690929|gb|EFS27764.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 734

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI  AF              + I + L  +   ++      
Sbjct: 4   KVIKRDGTVIDFDAKRIVHAISMAF----------KQNSRTIPEELISKIAHQIENL--E 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             I+ +E+IQD V   LM S    I   Y  YR  ++++R  +                 
Sbjct: 52  NKIMSVEEIQDLVVKKLMASSEKDIAMAYQSYRTLKTEIRNKEKSIYKQIGELVDASNES 111

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L +   +    + + +R L   +      L  +  + +     K     +   DL+  L
Sbjct: 112 LLVENANKDAKTISVQRDLLAGISSRDYYLNKIVPRHIKEAHIKG---EIHLHDLDYLL 167


>gi|256028545|ref|ZP_05442379.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium sp.
           D11]
 gi|289766464|ref|ZP_06525842.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D11]
 gi|289718019|gb|EFD82031.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           D11]
          Length = 728

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                 
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNKK 110

Query: 150 -------DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
                   D   IS     L   +      L  +  K +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRD-LLAGISSRDYYLNKIVPKHIKLAHIKG---EIHLHDLDYLL 166


>gi|255321696|ref|ZP_05362851.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           showae RM3277]
 gi|255301176|gb|EET80438.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           showae RM3277]
          Length = 701

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    + P KI  AI KAF +   +                ++    ++ H   +
Sbjct: 4   ILKRDGTKQEYLPYKIQDAIKKAFESESKEYD--------------DKVFLDVMGHVFDS 49

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            ++ +ED+QD +E +L  +GH  + + ++LYR      R        D
Sbjct: 50  EVLSVEDVQDYIEKALFNAGHFDVMKSFMLYRHTHKLQREQILGLNED 97


>gi|34497867|ref|NP_902082.1| anaerobic ribonucleoside triphosphate reductase [Chromobacterium
           violaceum ATCC 12472]
 gi|34103723|gb|AAQ60084.1| ribonucleoside-triphosphate reductase [Chromobacterium violaceum
           ATCC 12472]
          Length = 712

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QV KR+G V  FD  KI+ A  +A        A+       +   +  Q      +   
Sbjct: 2   LQVSKRDGAVVGFDIGKIANACQRA------AMAAGHAEPARLALEIASQVERE-CRQLA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I  IQ +VE +LM   + ++ R Y+ YR +R +VRA  S   +   +   +   
Sbjct: 55  RDGRLDIPAIQKRVEDALM-QRYPEVARVYIEYRHDRDNVRARGSELHAK--LMGLVHKT 111

Query: 149 MDDGTLISFNSK 160
             + T  + N  
Sbjct: 112 DREATTENANKD 123


>gi|332160122|ref|YP_004296699.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664352|gb|ADZ40996.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861978|emb|CBX72146.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           enterocolitica W22703]
          Length = 712

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A                    + Q  ++ 
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCA-----------TVARAVAQTMENQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  PKVDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 110 NKALLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 143


>gi|237744003|ref|ZP_04574484.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           7_1]
 gi|229431232|gb|EEO41444.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           7_1]
          Length = 728

 Score = 84.9 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F        +       +I+ +  Q           
Sbjct: 3   RVIKRDGSVVEFDKGRIINAIRKTF------EQASREPNMKLIEKIASQVEDL------P 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             ++ +E IQD V   LM S    I   Y  YR  ++++R  +                 
Sbjct: 51  DKVLAVEQIQDIVVKKLMGSSEKDIAMSYQSYRTLKAEIREKEKGIYRQIGELVDASNKK 110

Query: 150 -------DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
                   D   IS     L   +      L  +  K +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRD-LLAGISSRDYYLNKIVPKHIKLAHIKG---EIHLHDLDYLL 166


>gi|253991475|ref|YP_003042831.1| anaerobic ribonucleoside triphosphate reductase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638353|emb|CAR66975.1| anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782925|emb|CAQ86090.1| anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           asymbiotica]
          Length = 712

 Score = 84.9 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A        ++  +   +    +       +  H++  
Sbjct: 5   VIKRDGHQVPFDGERIRDAVKRA-------ASAAGVTDDEYCAQVASVVTQLMTNHSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I DIQ+ VE  LM   +  + R Y+ YR +R   R   SH   +        +   
Sbjct: 56  --VDIRDIQNAVENQLMAGNYKHLARIYIEYRHDRDIARELHSHLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NVSLLNENANKDSKVIPTQRDLLAGIVAKNYAKQ 143


>gi|304373799|ref|YP_003858544.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB16]
 gi|299829755|gb|ADJ55548.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB16]
          Length = 709

 Score = 84.5 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V KR+G    FD  KI  A+ KA     G                    +       +
Sbjct: 1   MKVEKRDGKTVDFDKEKIRIAVEKA----GGTMTDADA-----------AIMLVQYNQIR 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + I  IQ+ VE SLM++    + R Y+ YR +R   R  +S    D  
Sbjct: 46  DGSAMKIARIQELVEESLMKTNP-AVARAYIEYRHDRDIAREQKSKLFKDIS 96



 Score = 45.6 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETAL 202
           +K+   DG  + F+ +++ + VE+A   + D  + I+L + Y  + DG  +  + ++  +
Sbjct: 1   MKVEKRDGKTVDFDKEKIRIAVEKAGGTMTDADAAIMLVQ-YNQIRDGSAMKIARIQELV 59

Query: 203 IFS------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
             S      +      E  + +  AR    KL +++   V    ++ T+  
Sbjct: 60  EESLMKTNPAVARAYIEYRHDRDIAREQKSKLFKDISGMVNLSNKEITNEN 110


>gi|238755179|ref|ZP_04616525.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia ruckeri
           ATCC 29473]
 gi|238706626|gb|EEP98997.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia ruckeri
           ATCC 29473]
          Length = 712

 Score = 84.5 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV+   A         +  +  Q + +L Q     
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVDVVDADYCA----TVARVVAQKMEKLAQ----- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIREIQEAVENQLMAGDYKQLARAYIEYRHDRDVSRELRGRLNQE 101


>gi|123440857|ref|YP_001004848.1| anaerobic ribonucleoside triphosphate reductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087818|emb|CAL10604.1| anaerobic ribonucleoside-triphosphate reductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 712

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +AV    A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAVGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISREVRGRLNQE 101


>gi|168187697|ref|ZP_02622332.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
 gi|169294428|gb|EDS76561.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum C str. Eklund]
          Length = 703

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 17/128 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD   I+ AI                  +  +  LT++ + ++   +   
Sbjct: 4   VVKRDGRRVPFDSINITNAIK------GSADEIAFALKESEVIELTQKVIEQIELRDYKE 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQ+ VEC L Q+G+  I + Y  YR ER+ +R  +SH          + ++  
Sbjct: 58  --ISVEEIQNIVECVLQQNGYETIWKTYSNYRRERTKIREKKSHL---------MTVIQK 106

Query: 151 DGTLISFN 158
            G     +
Sbjct: 107 IGVETDRD 114



 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVE----EACSGLQDVSSKIVLSETYKNM----YDGLSE 195
            L ++  DG  + F+S  +   ++    E    L++     +  +  + +    Y  +S 
Sbjct: 1   MLYVVKRDGRRVPFDSINITNAIKGSADEIAFALKESEVIELTQKVIEQIELRDYKEISV 60

Query: 196 SDLETAL 202
            +++  +
Sbjct: 61  EEIQNIV 67


>gi|224373779|ref|YP_002608151.1| anaerobic ribonucleoside triphosphate reductase [Nautilia
           profundicola AmH]
 gi|223589780|gb|ACM93516.1| anaerobic ribonucleoside-triphosphate reductase [Nautilia
           profundicola AmH]
          Length = 703

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V ++ P KI  AI KAF A                          +++  + 
Sbjct: 3   KVIKRDGSVQNYFPYKIEDAIKKAFEATNVSYDPH--------------VFEEVIKQIQK 48

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +  +E IQD +E SL + G+  + + ++LYR      R 
Sbjct: 49  IEMPEVEYIQDLIEHSLYKHGYFDVMKNFMLYRHLHKLQRE 89


>gi|187777315|ref|ZP_02993788.1| hypothetical protein CLOSPO_00867 [Clostridium sporogenes ATCC
           15579]
 gi|187774243|gb|EDU38045.1| hypothetical protein CLOSPO_00867 [Clostridium sporogenes ATCC
           15579]
          Length = 713

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G    FD  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGA--------AEEIAFDMKESENISLTQRVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  KE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  + F+  ++   ++ A       +++  +  +     K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQRVIKKIEDSNKKEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|170760773|ref|YP_001785422.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169407762|gb|ACA56173.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 713

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G    FD  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  KE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  + F+  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKKEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|255028153|ref|ZP_05300104.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes LO28]
          Length = 180

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKASFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|168182298|ref|ZP_02616962.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Bf]
 gi|237793411|ref|YP_002860963.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum Ba4 str. 657]
 gi|182674680|gb|EDT86641.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Bf]
 gi|229260713|gb|ACQ51746.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum Ba4 str. 657]
          Length = 713

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G    FD  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEFDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  KE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 42.5 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  + F+  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEFDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKKEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|152979072|ref|YP_001344701.1| anaerobic ribonucleoside triphosphate reductase [Actinobacillus
           succinogenes 130Z]
 gi|150840795|gb|ABR74766.1| anaerobic ribonucleoside-triphosphate reductase [Actinobacillus
           succinogenes 130Z]
          Length = 708

 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  +SF+  +I  AI KA  AV+       I+ +     + +Q    + +H ++ 
Sbjct: 6   VIKRDGSRSSFEIQRIINAIKKAAKAVD-------IQDERYYHQIGQQACDEIFEHYQNE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +         + +
Sbjct: 59  --IDISHIQRIVENKLMASSYPQVARAYIEYRHDRDSAREKRSKLTKEIEGLIEQTNMAV 116

Query: 148 MMDD 151
           + ++
Sbjct: 117 LNEN 120


>gi|294782760|ref|ZP_06748086.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           1_1_41FAA]
 gi|294481401|gb|EFG29176.1| anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.
           1_1_41FAA]
          Length = 728

 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 21/179 (11%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G V  FD  +I  AI K F+       +       +I+ +  Q          S
Sbjct: 3   RVIKRDGSVIEFDKKRIINAISKTFI------QASREPNMKLIEKIATQVEE-----LPS 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-----APIAPK 144
             ++ +E+IQD V   LM S    I   Y  YR  ++++R  +                K
Sbjct: 52  -KVLSVEEIQDIVVKKLMASSEKDIAMSYQSYRTLKAEIRDREKGIYKQISELVDASNEK 110

Query: 145 LKIMMDDGTLISFNSKR-LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L     +    + + +R L   +      L  +  K +     K     +   DL+  L
Sbjct: 111 LLSENANKDAKTISVQRDLLAGISSRDYYLNKIVPKHIKLAHIKG---EIHLHDLDYLL 166


>gi|309972792|gb|ADO95993.1| Anaerobic ribonucleoside-triphosphate reductase, alpha subunit
           [Haemophilus influenzae R2846]
          Length = 707

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  AI KA  AV        I  +     + ++    +  H+   
Sbjct: 6   VIKRDGSRAEFKIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFIHH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|228477618|ref|ZP_04062251.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
 gi|228250762|gb|EEK09960.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           salivarius SK126]
          Length = 112

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     +     +  +  +T++ V  L     
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVLDDTW----RQNLAQVTKKVVLDLQDAQV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM++G   I   Y+ YR +R   R
Sbjct: 57  ER--PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLER 95


>gi|251791877|ref|YP_003006597.1| anaerobic ribonucleoside triphosphate reductase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533264|gb|ACS96510.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 708

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV   G        DI + ++        Q     
Sbjct: 6   VIKRDGSRIGFEIQRIINAIKKAAQAV---GIQDERFCHDIAQKVSNDIFAHHQQE---- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + +I R Y+ YR ER   R  +S    +  
Sbjct: 59  --IDISHIQKIVENHLMASRYPQIARAYIEYRHERDMAREKRSLLTKEIE 106


>gi|312863781|ref|ZP_07724019.1| ATP cone domain protein [Streptococcus vestibularis F0396]
 gi|322373150|ref|ZP_08047686.1| ATP cone domain protein [Streptococcus sp. C150]
 gi|322516549|ref|ZP_08069465.1| ATP cone domain protein [Streptococcus vestibularis ATCC 49124]
 gi|311101317|gb|EFQ59522.1| ATP cone domain protein [Streptococcus vestibularis F0396]
 gi|321278192|gb|EFX55261.1| ATP cone domain protein [Streptococcus sp. C150]
 gi|322124937|gb|EFX96357.1| ATP cone domain protein [Streptococcus vestibularis ATCC 49124]
          Length = 112

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     +     +  +  +T + V  L     
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVIDDAW----RQNLAQVTRKVVLDLQDAQV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM++G   I   Y+ YR +R   R
Sbjct: 57  ER--PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLER 95


>gi|167957220|ref|ZP_02544294.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 97

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202
           +K++  DGT  +F++ ++ M +  A  GL D       + SE    ++DG++   L  ++
Sbjct: 6   IKVVKRDGTSEAFDANKINMELIAAAEGLPDQISKVAQISSEVQLTLFDGITTEQLNESI 65

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEK-LRREV 232
           I ++   I+ +P++  + +R LL+  L++  
Sbjct: 66  INTALQNIKDDPDFDVIASRLLLKNYLQKRA 96


>gi|261868776|ref|YP_003256698.1| anaerobic ribonucleoside triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414108|gb|ACX83479.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 708

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  AI KA  AV        I        + ++    +  H    
Sbjct: 6   VIKRDGSRISFELQRIVNAIKKAAQAV-------GITDDRYCYAVAQKVSDDIFSHY--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 57  QEIDISHIQKIVENHLMASQYPQVARAYIEYRHDRDLAREKRSQLTREIE 106


>gi|322515844|ref|ZP_08068788.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus vestibularis ATCC 49124]
 gi|322125730|gb|EFX97052.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus vestibularis ATCC 49124]
          Length = 734

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD SKI  AI+KA           +  ++  ++ +  + V  +   
Sbjct: 13  PDIKVIKRDGRMVVFDSSKIYEAILKA----SEAITPITPIIETKLEGIATRIVAEINDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FSHN--IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQATDIN 116



 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +    + P +K++  DG ++ F+S ++   + +A   +  ++             +++E
Sbjct: 5   EQEKVTVNPDIKVIKRDGRMVVFDSSKIYEAILKASEAITPITPIIETKLEGIATRIVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
                   +   ++++ +
Sbjct: 65  INDRFSHNIKIYEIQSIV 82


>gi|293390629|ref|ZP_06634963.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951163|gb|EFE01282.1| anaerobic ribonucleoside-triphosphate reductase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 708

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  AI KA  AV        I        + ++    +  H    
Sbjct: 6   VIKRDGSRISFELQRIVNAIKKAAQAV-------GITDDRYCYAVAQKVSDDIFSHY--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 57  QEIDISHIQKIVENHLMASQYPQVARAYIEYRHDRDLAREKRSQLTREIE 106


>gi|317056517|ref|YP_004104984.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
 gi|315448786|gb|ADU22350.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           7]
          Length = 723

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FDP KI  A+ KA +A E    S      + I ++T+       + NK
Sbjct: 1   MKIIKRNGAEEVFDPDKIINAVKKANIAGEKGRIS-----DEEIADVTDYVE---YKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKIT 115
               V +E+IQD VE  LM  G  ++ 
Sbjct: 53  LGRAVTVEEIQDMVENQLMAKGAFELA 79


>gi|170718686|ref|YP_001783879.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus somnus
           2336]
 gi|168826815|gb|ACA32186.1| anaerobic ribonucleoside-triphosphate reductase [Haemophilus somnus
           2336]
          Length = 708

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I+ +     + +     +  H    
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------IQDEMFCHKIGQLVCDNIFAHY--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ+ VE  LM S + ++ R Y+ YR ER   R  +S+   +  
Sbjct: 57  KEIDISHIQEIVENHLMASKYPQVARAYIEYRHERDLAREKRSNLTKEIE 106


>gi|237807193|ref|YP_002891633.1| anaerobic ribonucleoside triphosphate reductase [Tolumonas auensis
           DSM 9187]
 gi|237499454|gb|ACQ92047.1| anaerobic ribonucleoside-triphosphate reductase [Tolumonas auensis
           DSM 9187]
          Length = 707

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD S+I +A+ KA         + ++R      ++  Q  + L   ++  
Sbjct: 7   VIKRDGCRVSFDGSRIWQAVAKA-------AEAVNVRDDAYCASVAGQIASLLAGRDE-- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I ++Q  VE  LM+  H K+ R Y+ YR +R   R  Q     +        I   
Sbjct: 58  --VDISEVQTLVENLLMEGPHKKLARAYIEYRHDRDLAREKQGRLNKEIQGL----IQQT 111

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K    +
Sbjct: 112 NAELLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 145


>gi|113461609|ref|YP_719678.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus somnus
           129PT]
 gi|112823652|gb|ABI25741.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Haemophilus
           somnus 129PT]
          Length = 708

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 13/154 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI KA  AV        I+ +     + +     +  H+   
Sbjct: 6   VIKRDGSRAEFEIQRIINAIKKAASAVN-------IQDEMFCHKIGQLVCDDIFAHH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I  IQ+ VE  LM S + ++ R Y+ YR ER   R  +S+   +        I   
Sbjct: 57  KEIDISRIQEIVENHLMGSQYPQVARAYIEYRHERDLAREKRSNLTKEIEGL----IQQS 112

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K     
Sbjct: 113 NVELLNENANKDAKVIPTQRDLLAGIVAKHYAKR 146


>gi|315928437|gb|EFV07749.1| ATP cone domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 91

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           +K++  +G     +  +++    +A   L+ V+   +  +      DG+S  +++  LI 
Sbjct: 1   MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60

Query: 205 SSRTLIEKE-PNYAKVTARFLL 225
           ++   I+ + PN+  V AR  L
Sbjct: 61  TAVDKIDIDCPNWTFVAARLFL 82


>gi|290581341|ref|YP_003485733.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans NN2025]
 gi|254998240|dbj|BAH88841.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans NN2025]
          Length = 734

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI +AI++A      +    +  ++  +  + ++ V  + +     
Sbjct: 17  VIKRDGRHVAFDKDKIYQAIVRA----SNQVTELTPFIEAKLSGIADRVVAEIYERFTEN 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + I +IQ+ VE  L+Q+G + I +EY+ YR +R   R+  +   
Sbjct: 73  --IKIYEIQNIVEHELLQAGEYVIAQEYINYRAKRDFERSQATDIN 116



 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K +  + P + ++  DG  ++F+  ++   +  A + + +++             V++E
Sbjct: 5   EKENIFVKPDVIVIKRDGRHVAFDKDKIYQAIVRASNQVTELTPFIEAKLSGIADRVVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
            Y+   + +   +++  +
Sbjct: 65  IYERFTENIKIYEIQNIV 82


>gi|322374031|ref|ZP_08048565.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C150]
 gi|321276997|gb|EFX54068.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C150]
          Length = 734

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + +FD SKI  AI+KA  A+        ++++ I   +  +   R  Q+
Sbjct: 13  PDIKVIKRDGRMVAFDSSKIYEAILKASDAITPVTPLIEVKLESIANRIVAEINDRFSQN 72

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 V I +IQ  VE  L+ +  + I +EY+ YR +R   R+  +   
Sbjct: 73  ------VKIYEIQSIVEHELLSANEYAIAQEYINYRTKRDFERSQATDIN 116



 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    + P +K++  DG +++F+S ++   + +A   +  V+             +++E
Sbjct: 5   EKEKVTVNPDIKVIKRDGRMVAFDSSKIYEAILKASDAITPVTPLIEVKLESIANRIVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
                   +   ++++ +
Sbjct: 65  INDRFSQNVKIYEIQSIV 82


>gi|254993187|ref|ZP_05275377.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J2-064]
          Length = 165

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|153956348|ref|YP_001397113.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           kluyveri DSM 555]
 gi|219856663|ref|YP_002473785.1| hypothetical protein CKR_3320 [Clostridium kluyveri NBRC 12016]
 gi|146349206|gb|EDK35742.1| NrdD [Clostridium kluyveri DSM 555]
 gi|219570387|dbj|BAH08371.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 701

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 17/130 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    F+  KI+ AI  A  + E     +     D    LT++ +  + +   
Sbjct: 2   LHVVKRDGRKVEFNSIKITNAIKSA--SEEIGYELKESDFID----LTQKVIKEIEEL-- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   + +E+IQ+ VE  L+++GH KI   Y  YR ER+ +R  +S           +K++
Sbjct: 54  NVKEIEVEEIQNIVEKILLKNGHRKIGLVYSNYRSERTKIRDIKS---------DLMKVI 104

Query: 149 MDDGTLISFN 158
              G     +
Sbjct: 105 DKIGVETDRD 114



 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC----SGLQDVSSKIVLSETYKNMYDGLSESDLE 199
            L ++  DG  + FNS ++   ++ A       L++     +  +  K + + L+  ++E
Sbjct: 1   MLHVVKRDGRKVEFNSIKITNAIKSASEEIGYELKESDFIDLTQKVIKEI-EELNVKEIE 59

Query: 200 TALIFSSRTLI 210
              I +    I
Sbjct: 60  VEEIQNIVEKI 70


>gi|24380409|ref|NP_722364.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           mutans UA159]
 gi|24378433|gb|AAN59670.1|AE015029_9 putative anaerobic ribonucleoside-triphosphate reductase
           [Streptococcus mutans UA159]
          Length = 734

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI +AI++A      +    +  ++  +  + ++ V  + +     
Sbjct: 17  VIKRDGRHVAFDKDKIYQAIVRA----SNQVTELTPFIEAKLSGIADRVVAEIYERFTEN 72

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             + I +IQ+ VE  L+Q+G + I +EY+ YR +R   R+  +   
Sbjct: 73  --IKIYEIQNIVEHELLQAGEYVIAQEYINYRAKRDFERSQATDIN 116



 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K +  + P + ++  DG  ++F+  ++   +  A + + +++             V++E
Sbjct: 5   EKENIFVKPDVIVIKRDGRHVAFDKDKIYQAIVRASNQVTELTPFIEAKLSGIADRVVAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
            Y+   + +   +++  +
Sbjct: 65  IYERFTENIKIYEIQNIV 82


>gi|145636719|ref|ZP_01792385.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittHH]
 gi|145270017|gb|EDK09954.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae PittHH]
          Length = 707

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+     F+  +I  AI KA  AV        I  +     + ++    +  H+   
Sbjct: 6   VIKRDSSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFTHH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|251782435|ref|YP_002996737.1| hypothetical protein SDEG_1024 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391064|dbj|BAH81523.1| hypothetical protein SDEG_1024 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 118

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  +  +T++ V  L + + 
Sbjct: 7   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDDTW----RQNLAQVTKKVVIDLEEVHA 62

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM +G+  I   Y+ YR +R   R
Sbjct: 63  ER--PTINMIQSLVENRLMDAGYITIAEHYISYRLQRDLER 101



 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS------KIVLSETYKNMYDGLSESDL 198
           ++I+  DG +  F+  ++   + +A   +  +          V  +   ++ + +     
Sbjct: 7   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDDTWRQNLAQVTKKVVIDL-EEVHAERP 65

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
              +I S       +  Y  +   ++  +L+R++
Sbjct: 66  TINMIQSLVENRLMDAGYITIAEHYISYRLQRDL 99


>gi|255522361|ref|ZP_05389598.1| anaerobic ribonucleoside triphosphate reductase [Listeria
           monocytogenes FSL J1-175]
          Length = 148

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  KI  A+  +  A+  +            +   E+ +  ++    + 
Sbjct: 11  VIKRDGRKANFDLIKIRNAVEASMKAINLED-----------ETFLEEILLEVVSELPNK 59

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I++IQ  VE +LM+S +  + R Y+ YR +R   R   +            K++  
Sbjct: 60  ADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVE-----KLLQK 114

Query: 151 DGTLISFNSKR 161
           D T+++ N+ +
Sbjct: 115 DKTVVNENANK 125


>gi|307720177|ref|YP_003891317.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978270|gb|ADN08305.1| anaerobic ribonucleoside-triphosphate reductase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 702

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 14/100 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           ++KR+G    F   KI  AI KAF++                    E    +++Q   + 
Sbjct: 5   ILKRDGSYKQFFSYKIEDAIKKAFLSEHVDFD--------------ETVYIKVIQRLDAK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +V +EDIQD +E  L ++ +  + R ++LYR      R 
Sbjct: 51  RVVAVEDIQDIIEQELFKAKYFDVMRSFMLYRHLHKLQRD 90


>gi|329117224|ref|ZP_08245941.1| ATP cone domain protein [Streptococcus parauberis NCFD 2020]
 gi|326907629|gb|EGE54543.1| ATP cone domain protein [Streptococcus parauberis NCFD 2020]
          Length = 112

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  F+P KI +AI+KA   V     +     +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQVAEFNPDKIYQAIIKAARTVYVIDETW----RQNLAQVTKKVVLDLEE--A 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM +G   +   Y+ YR +R   R
Sbjct: 55  KVEKPTINMIQSLVENRLMDAGFINVAEHYISYRLQRDLER 95


>gi|148982125|ref|ZP_01816601.1| anaerobic ribonucleoside triphosphate reductase [Vibrionales
           bacterium SWAT-3]
 gi|145960658|gb|EDK26004.1| anaerobic ribonucleoside triphosphate reductase [Vibrionales
           bacterium SWAT-3]
          Length = 496

 Score = 83.7 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S +    I          +    +  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAA-----------SDKTDKEIAIYALNVALAVELKLEDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   F+  R++  VE A         + +  V       +  YD +  S+++T 
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVELKLEDYDEVHISEIQTM 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          S      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDLINEN 117


>gi|312278622|gb|ADQ63279.1| Anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           thermophilus ND03]
          Length = 112

 Score = 83.7 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     S    +  + K +        ++   
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVLDDSWRQNLAQVTKKVALDLQDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM++G   I   Y+ YR +R   R
Sbjct: 59  ----PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLER 95


>gi|55821294|ref|YP_139736.1| hypothetical protein stu1289 [Streptococcus thermophilus LMG 18311]
 gi|55823206|ref|YP_141647.1| hypothetical protein str1289 [Streptococcus thermophilus CNRZ1066]
 gi|55737279|gb|AAV60921.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55739191|gb|AAV62832.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 112

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKRNG V  FDP KI +AI+KA   V     S    +  + K +        ++   
Sbjct: 1   MQIIKRNGQVAEFDPDKIYQAILKAAQTVYVLDDSWRQNLAQVTKKVALDLKDAQVER-- 58

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM++G   I   Y+ YR +R   R
Sbjct: 59  ----PTINMIQSLVENRLMEAGFINIAEHYISYRLQRDLER 95


>gi|156932481|ref|YP_001436397.1| anaerobic ribonucleoside triphosphate reductase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156530735|gb|ABU75561.1| hypothetical protein ESA_00260 [Cronobacter sakazakii ATCC BAA-894]
          Length = 711

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+ ++I  AI++A         +  +   D    + E   +++    +  
Sbjct: 5   VVKRDGCKVPFNSTRIREAILRA-------AQAAGVDDADYCATVAEIVSSQMQHRRE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 56  --VDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKE 101



 Score = 43.3 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS--GLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG  + FNS R+   +  A    G+ D      ++E   +      E D+    I
Sbjct: 4   HVVKRDGCKVPFNSTRIREAILRAAQAAGVDDADYCATVAEIVSSQMQHRREVDIHE--I 61

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259
            ++        NY ++   ++  +  R++      +  K     ++   P      
Sbjct: 62  QTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKEIRGLVEQTNPALLNEN 117


>gi|157737486|ref|YP_001490169.1| anaerobic ribonucleoside triphosphate reductase [Arcobacter
           butzleri RM4018]
 gi|157699340|gb|ABV67500.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Arcobacter
           butzleri RM4018]
          Length = 704

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V ++KR+G   SF+  KI  AI KAF +V  K                      +L   K
Sbjct: 3   VDILKRDGSKQSFESYKIEDAIKKAFKSVNIKYDI--------------SVFFNVLFELK 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              +V +EDIQD +E  L ++ +  + + +++YR      R        D
Sbjct: 49  CKRVVAVEDIQDIIEKELYKARYFDVMKSFMIYRHLHKIQREQILQINKD 98


>gi|309799048|ref|ZP_07693301.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           infantis SK1302]
 gi|308117283|gb|EFO54706.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           infantis SK1302]
          Length = 560

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 18  LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTE 77
                P     V+  KR+G    FD  KI +A+ KA      K    +  V+  +  L E
Sbjct: 5   EEKTAPSPTLFVE--KRDGRRVVFDVEKIEKALHKA----AEKVMDVTPLVEKRLSTLVE 58

Query: 78  QTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           + V  +         V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 59  RIVEEIHSRFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +     +P L +   DG  + F+ +++E  + +A   + DV+           + ++ E
Sbjct: 4   LEEKTAPSPTLFVEKRDGRRVVFDVEKIEKALHKAAEKVMDVTPLVEKRLSTLVERIVEE 63

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 64  IHSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|322411829|gb|EFY02737.1| Putative anaerobic ribonucleotide reductase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323127322|gb|ADX24619.1| Putative anaerobic ribonucleotide reductase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 112

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  +  +T++ V  L + + 
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDDTW----RQNLAQVTKKVVIDLEEVHA 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM +G+  I   Y+ YR +R   R
Sbjct: 57  ER--PTINMIQSLVENRLMDAGYITIAEHYISYRLQRDLER 95



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS------KIVLSETYKNMYDGLSESDL 198
           ++I+  DG +  F+  ++   + +A   +  +          V  +   ++ + +     
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDDTWRQNLAQVTKKVVIDL-EEVHAERP 59

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
              +I S       +  Y  +   ++  +L+R++
Sbjct: 60  TINMIQSLVENRLMDAGYITIAEHYISYRLQRDL 93


>gi|315637212|ref|ZP_07892432.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
 gi|315478484|gb|EFU69197.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Arcobacter butzleri JV22]
          Length = 704

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V ++KR+G   SF+  KI  AI KAF +V  K                      +L   K
Sbjct: 3   VDILKRDGSKQSFESYKIEDAIKKAFKSVNIKYDI--------------SVFFNVLFELK 48

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              +V +EDIQD +E  L ++ +  + + +++YR      R        D
Sbjct: 49  CKRVVAVEDIQDIIEKELYKARYFDVMKSFMIYRHLHKIQREQILQINKD 98


>gi|293393112|ref|ZP_06637427.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
 gi|291424258|gb|EFE97472.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Serratia odorifera DSM 4582]
          Length = 708

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    FD ++I +AI +A +AV    A     V  ++               +   
Sbjct: 2   IKRDGCQVPFDQARIGQAIERAALAVGVVDADYCATVARVVAQ-----------QMEQQQ 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 51  RVDIHDIQLAVENQLMAGPYKQLARAYIEYRHDRDVSRELRGRLNQE 97


>gi|168492156|ref|ZP_02716299.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573603|gb|EDT94131.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 735

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLDDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  +++  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYELAEEYITYRTQRDFERSKATDIN 115



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLDDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E E     +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYELAEEYITYR 101


>gi|194397878|ref|YP_002036904.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae G54]
 gi|194357545|gb|ACF55993.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae G54]
          Length = 735

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALYKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 45.6 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALYKAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|149911726|ref|ZP_01900333.1| anaerobic ribonucleoside triphosphate reductase [Moritella sp.
           PE36]
 gi|149805199|gb|EDM65217.1| anaerobic ribonucleoside triphosphate reductase [Moritella sp.
           PE36]
          Length = 711

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  AI  A  +V+ +    ++ + + ++ +       + Q   S 
Sbjct: 5   VIKRDGCRVRFNIQRIQDAIFAAAKSVQQQSRDHAVEMANKVQKIL------ITQDVSSE 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I  IQ+ VE  LMQ  +  I R Y+ YR +R   R  QS   ++        I   
Sbjct: 59  HAIEIHTIQNTVEDVLMQESNKLIARAYIEYRHQRDIARETQSILTNEIKGL----IEQS 114

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 115 NESLLNENANKDSKVIPTQRDLLAGIVAKHYAKQ 148


>gi|255528304|ref|ZP_05395116.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           carboxidivorans P7]
 gi|255508006|gb|EET84434.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           carboxidivorans P7]
          Length = 700

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD  KI+ AI  +  + E     +     +    LT++ + +L + + 
Sbjct: 2   LHVVKRDGREVEFDSIKITNAIKGS--SEEIGYDLKESEFIE----LTQKVIKQLEELDA 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           +   +++E IQ+ VE +L+++ + +I   Y  YR+ER+ +R  +S       
Sbjct: 56  NE--INVEQIQNFVEKTLLENDYREIGTAYCNYRKERNKIREIKSDLMKAIE 105



 Score = 43.3 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIV----EEACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
            L ++  DG  + F+S ++   +    EE    L++     +  +  K + + L  +++ 
Sbjct: 1   MLHVVKRDGREVEFDSIKITNAIKGSSEEIGYDLKESEFIELTQKVIKQL-EELDANEIN 59

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231
              I +       E +Y ++   +     R+E
Sbjct: 60  VEQIQNFVEKTLLENDYREIGTAYC--NYRKE 89


>gi|145642160|ref|ZP_01797729.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae R3021]
 gi|145273151|gb|EDK13028.1| anaerobic ribonucleoside triphosphate reductase [Haemophilus
           influenzae 22.4-21]
          Length = 707

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+     F+  +I  AI KA  AV        I  +     + ++    +  H+   
Sbjct: 6   VIKRDSSRAEFEIQRIINAIKKAASAVN-------ISDEFYCHQIGQEVGNEIFIHH--Q 56

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM S + ++ R Y+ YR +R   R  +S    +  
Sbjct: 57  GEIDINQIQKIVEDKLMASRYPEVARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|256544963|ref|ZP_05472333.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399350|gb|EEU12957.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           vaginalis ATCC 51170]
          Length = 706

 Score = 83.0 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 22/181 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V+KRNG    FD  KI  AI KA  +  G            I+N  E+    + +  +
Sbjct: 2   VKVVKRNGQKVDFDKEKIKIAIEKAMNSPNGV----------YIENQAEKIADEIEKRAE 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK--LK 146
           +   + I  I+DQV   L+   +    + Y  YR   +  R A +       +  +  + 
Sbjct: 52  NKREISIYQIEDQVYYKLIDKKNPATAKSYEAYRSVHAYKREANTTDDDIIGLLERTNID 111

Query: 147 IMMDDGTLISFNSKRLEMIVE-EACSGLQD---VSSKIVLSETYKNMYDG-LSESDLETA 201
           +M ++       +     ++  E    L     + + +V +       DG +   DL+  
Sbjct: 112 VMDENSNKNPLIASTQRDLIAGEVSKDLAKRKLIDADLVEAHE-----DGAIHIHDLDYL 166

Query: 202 L 202
           +
Sbjct: 167 I 167


>gi|294510243|ref|YP_002395294.2| anaerobic ribonucleoside-triphosphate reductase (N-terminal part)
           [Vibrio splendidus LGP32]
 gi|223587979|emb|CAV26396.2| anaerobic ribonucleoside-triphosphate reductase [Vibrio splendidus
           LGP32]
          Length = 707

 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S +    I          +    +  
Sbjct: 6   VIKRDGSRAPFSRDRIQAAVEAA-----------SDKTDKEIAIYALNVALAVELKLEDY 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 55  DEVHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 114

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 115 INENANKDGKVIPTQRDLLAGIVAK 139



 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   F+  R++  VE A         + +  V       +  YD +  S+++T 
Sbjct: 6   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVELKLEDYDEVHISEIQTM 65

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          S      E  + +  AR     L RE+   + +      +  
Sbjct: 66  VENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDLINEN 118


>gi|86148016|ref|ZP_01066319.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. MED222]
 gi|85834240|gb|EAQ52395.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. MED222]
          Length = 706

 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S +    I          +    +  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAA-----------SDKTDKEIAIYALNVALAVELKLEDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHISEIQTMVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   F+  R++  VE A         + +  V       +  YD +  S+++T 
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAASDKTDKEIAIYALNVALAVELKLEDYDEVHISEIQTM 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          S      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDLINEN 117


>gi|152973118|ref|YP_001338264.1| anaerobic ribonucleoside triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892730|ref|YP_002917464.1| anaerobic ribonucleoside triphosphate reductase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150957967|gb|ABR79997.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238545046|dbj|BAH61397.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 712

 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  +I  AI++A  A     A     V +++               +  
Sbjct: 5   VMKRDGCKVPFNSERIQEAILRAAKAAGVDDADYCATVAEVVSQ-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  AQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101



 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS--GLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +M  DG  + FNS+R++  +  A    G+ D      ++E       G ++ D+    I
Sbjct: 4   HVMKRDGCKVPFNSERIQEAILRAAKAAGVDDADYCATVAEVVSQQMQGRAQVDINE--I 61

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRRE 231
            ++         Y ++   ++  +  R+
Sbjct: 62  QTAVENQLMSGPYKQLARAYIEYRHDRD 89


>gi|84393950|ref|ZP_00992691.1| anaerobic ribonucleoside triphosphate reductase [Vibrio splendidus
           12B01]
 gi|84375449|gb|EAP92355.1| anaerobic ribonucleoside triphosphate reductase [Vibrio splendidus
           12B01]
          Length = 706

 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S +    I          +    +  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAA-----------SDKADKEIAIYALNVALAVELKLEDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHISEIQTLVENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   F+  R++  VE A         + +  V       +  YD +  S+++T 
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAASDKADKEIAIYALNVALAVELKLEDYDEVHISEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          S      E  + +  AR     L RE+   + +      +  
Sbjct: 65  VENELMQGPYKSLARAYIEYRHDRDIAREKQSALTREIEGLIEESNVDLINEN 117


>gi|24379431|ref|NP_721386.1| putative ribonucleotide reductase [Streptococcus mutans UA159]
 gi|290580558|ref|YP_003484950.1| putative ribonucleotide reductase [Streptococcus mutans NN2025]
 gi|24377364|gb|AAN58692.1|AE014938_8 putative ribonucleotide reductase [Streptococcus mutans UA159]
 gi|254997457|dbj|BAH88058.1| putative ribonucleotide reductase [Streptococcus mutans NN2025]
          Length = 122

 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +AI+ A   V     +    ++  +  +T++ V  L +   
Sbjct: 11  MQVIKRSGQVVDFDPDKIYQAILGAAQTVYVLDDA----LRQDLAQVTKKVVVDLEEAQT 66

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ QVE  L+ +G+  I   Y+ YR +R   R
Sbjct: 67  ERPTISM--IQSQVEHRLLDAGYITIAEHYISYRLQRDLER 105


>gi|254459239|ref|ZP_05072661.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacterales
           bacterium GD 1]
 gi|207084132|gb|EDZ61422.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacterales
           bacterium GD 1]
          Length = 702

 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G    F   KI  AI KAF +      S                   +L   K+
Sbjct: 4   NILKRDGTHKEFLSFKIEDAIKKAFKSENITYDS--------------SIFFNVLDRLKN 49

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +V +EDIQD +E  L +  +  + R ++LYR      R 
Sbjct: 50  KRVVAVEDIQDAIEKELYKGRYFDVMRSFILYRHMHKMQRD 90


>gi|307711059|ref|ZP_07647481.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|307617021|gb|EFN96199.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
          Length = 735

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.0 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +      P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITTLPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|313890446|ref|ZP_07824076.1| ATP cone domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522961|ref|ZP_08399213.1| ATP cone domain protein [Streptococcus porcinus str. Jelinkova 176]
 gi|313121189|gb|EFR44298.1| ATP cone domain protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|332314225|gb|EGJ27210.1| ATP cone domain protein [Streptococcus porcinus str. Jelinkova 176]
          Length = 112

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAARTVYVIDETW----RQNLAQVTKKVVIDLEE--A 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM +G   I   Y+ YR +R   R
Sbjct: 55  KVEKPTINMIQSLVENRLMDAGFINIAEHYISYRLQRDLER 95


>gi|307704058|ref|ZP_07640988.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
 gi|307622388|gb|EFO01395.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
          Length = 735

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.4 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|307709905|ref|ZP_07646352.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
 gi|307619276|gb|EFN98405.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
          Length = 735

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPKG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.4 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPKGVKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|260599405|ref|YP_003211976.1| anaerobic ribonucleoside triphosphate reductase [Cronobacter
           turicensis z3032]
 gi|260218582|emb|CBA33838.1| Anaerobic ribonucleoside-triphosphate reductase [Cronobacter
           turicensis z3032]
          Length = 711

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+ ++I  AI++A         +  +   D    + E   +++    +  
Sbjct: 5   VVKRDGCKVPFNSARIHEAILRA-------AQAAGVDDADYCATVAEIVSSQMQGRRE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 56  --VDIHEIQTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKE 101



 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACS--GLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            ++  DG  + FNS R+   +  A    G+ D      ++E   +   G  E D+    I
Sbjct: 4   HVVKRDGCKVPFNSARIHEAILRAAQAAGVDDADYCATVAEIVSSQMQGRREVDIHE--I 61

Query: 204 FSSRTLIEKEPNYAKVT------------ARFLLEKLRREVLTTVYKKPQKATHHE 247
            ++        NY ++             AR    +L +E+   V +      +  
Sbjct: 62  QTAVENQLMAGNYKQLARAYIEYRHDRDIAREKQGRLNKEIRGLVEQTNSALLNEN 117


>gi|118444516|ref|YP_877160.1| anaerobic ribonucleoside triphosphate reductase [Clostridium novyi
           NT]
 gi|118134972|gb|ABK62016.1| oxygen-sensitive ribonucleoside-triphosphate reductase nrdD
           [Clostridium novyi NT]
          Length = 703

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD   I  AI                  +  I  LT++ + ++     + 
Sbjct: 4   VVKRDGRRVPFDSINIKNAIK------GSADEIAFALKESEIIELTQKVIEQI--EIINC 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQ+ VEC L Q+G+  I + Y  YR ER+ +R  +SH          + ++  
Sbjct: 56  KEISVEEIQNIVECVLQQNGYETIWKTYSNYRRERTKIREKKSHL---------MTVIQK 106

Query: 151 DGTLISFN 158
            G     +
Sbjct: 107 IGVETDRD 114


>gi|307708055|ref|ZP_07644523.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis NCTC 12261]
 gi|307615840|gb|EFN95045.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis NCTC 12261]
          Length = 735

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.4 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|323491825|ref|ZP_08097000.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           brasiliensis LMG 20546]
 gi|323313960|gb|EGA67049.1| anaerobic ribonucleoside triphosphate reductase [Vibrio
           brasiliensis LMG 20546]
          Length = 706

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVESA-----------AEHVDQEIAVYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARSYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++  DG+   F+  R++  VE A   +     V +  V       + D     ++    I
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVESAAEHVDQEIAVYALNVALAVELQLKD---HDEVHIHEI 61

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREV 232
            +       +  Y  +   ++  +  R++
Sbjct: 62  QTRVENELMQGPYKSLARSYIEYRHDRDI 90


>gi|289168739|ref|YP_003447008.1| anaerobic ribonucleotide reductase [Streptococcus mitis B6]
 gi|288908306|emb|CBJ23148.1| anaerobic ribonucleotide reductase [Streptococcus mitis B6]
          Length = 737

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 69  RFPQG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.0 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 5   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVT 64

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 65  EIHSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|322377235|ref|ZP_08051727.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M334]
 gi|321281948|gb|EFX58956.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M334]
          Length = 737

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  +  LTE+ VT +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNALTERIVTEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 69  RFPKG--VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 5   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNALTERIVT 64

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 65  EIHSRFPKGVKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|328944724|gb|EGG38885.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1087]
          Length = 732

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 10  ESAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 65

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 66  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 116


>gi|157150561|ref|YP_001450490.1| anaerobic ribonucleotide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262282234|ref|ZP_06060002.1| anaerobic ribonucleotide reductase [Streptococcus sp. 2_1_36FAA]
 gi|157075355|gb|ABV10038.1| anaerobic ribonucleotide reductase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262261525|gb|EEY80223.1| anaerobic ribonucleotide reductase [Streptococcus sp. 2_1_36FAA]
          Length = 112

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVDFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLQEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVESRLLGAGYITIAEHYISYRLQRDLER 95


>gi|333010248|gb|EGK29681.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           VA-6]
          Length = 712

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVNE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|66391712|ref|YP_239237.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB43]
 gi|62288800|gb|AAX78783.1| NrdD anaerobic ribonucleotide reductase subunit [Enterobacteria
           phage RB43]
          Length = 707

 Score = 82.2 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  A+ KA     G                    +       +
Sbjct: 1   MLVEKRDGKTVDFDKEKIRIAVEKA----GGTMTDADA-----------AIMLVQYNQIR 45

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + I  IQ+ VE SLM++    + R Y+ YR +R   R  +S    D  
Sbjct: 46  DGSAMKIARIQELVEESLMKTNP-AVARAYIEYRHDRDIAREQKSKLFKDIS 96



 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLETAL 202
           + +   DG  + F+ +++ + VE+A   + D  + I+L + Y  + DG  +  + ++  +
Sbjct: 1   MLVEKRDGKTVDFDKEKIRIAVEKAGGTMTDADAAIMLVQ-YNQIRDGSAMKIARIQELV 59

Query: 203 IFS------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
             S      +      E  + +  AR    KL +++   V    ++ T+ E    +   F
Sbjct: 60  EESLMKTNPAVARAYIEYRHDRDIAREQKSKLFKDISGMVNLSNKEITN-ENANKHARVF 118

Query: 257 C 257
            
Sbjct: 119 P 119


>gi|333011226|gb|EGK30640.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-272]
 gi|333012117|gb|EGK31499.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-227]
          Length = 712

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVNE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|110808020|ref|YP_691540.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           5 str. 8401]
 gi|110617568|gb|ABF06235.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           5 str. 8401]
          Length = 712

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVNE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|24115453|ref|NP_709963.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           2a str. 301]
 gi|30065475|ref|NP_839646.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           2a str. 2457T]
 gi|24054771|gb|AAN45670.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2a str. 301]
 gi|30043739|gb|AAP19458.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2a str. 2457T]
 gi|281603563|gb|ADA76547.1| Anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2002017]
 gi|332748966|gb|EGJ79389.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-671]
 gi|332749245|gb|EGJ79666.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           4343-70]
 gi|332749871|gb|EGJ80284.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2747-71]
 gi|332763139|gb|EGJ93382.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2930-71]
 gi|333009101|gb|EGK28557.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-218]
 gi|333012034|gb|EGK31419.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           K-304]
          Length = 712

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVNE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|262173685|ref|ZP_06041362.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus MB-451]
 gi|261891043|gb|EEY37030.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus MB-451]
          Length = 706

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------ADHADQEIAIYALNVALAVELKLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103



 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-----KIVLSETYKNMYDGLSESDLETA 201
           ++  DG+   FN  R++  VE A        +       +  E     Y+ +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAADHADQEIAIYALNVALAVELKLKGYEEVHIAEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIEGLIQESNADLLNEN 117


>gi|258624529|ref|ZP_05719471.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM603]
 gi|258583182|gb|EEW07989.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM603]
          Length = 706

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------ADHADQEIAIYALNVALAVELKLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103



 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-----KIVLSETYKNMYDGLSESDLETA 201
           ++  DG+   FN  R++  VE A        +       +  E     Y+ +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAADHADQEIAIYALNVALAVELKLKGYEEVHIAEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIEGLIQESNADLLNEN 117


>gi|238761800|ref|ZP_04622774.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           kristensenii ATCC 33638]
 gi|238699914|gb|EEP92657.1| Anaerobic ribonucleoside-triphosphate reductase [Yersinia
           kristensenii ATCC 33638]
          Length = 712

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+ +A +A     A     V         + V + +++    
Sbjct: 5   VIKRDGCQVPFDEVRIKEAVERAALAAGVVDADYCATV--------ARVVAQTMENQPK- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDIRDIQTAVENQLMAGQYKQLARAYIEYRHDRDISRELRGRLNQE 101


>gi|91792777|ref|YP_562428.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           denitrificans OS217]
 gi|91714779|gb|ABE54705.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           denitrificans OS217]
          Length = 704

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T F+  +I  A++ A  +        + +  D    L EQ      Q  +  
Sbjct: 4   VIKRDGCRTVFNAERIQEAVIAAMAS-------ANKQDVDYACTLAEQV----RQQMQGK 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I ++QD VE  LM   +  + R Y+ YR +R   R A+S             +   
Sbjct: 53  REVDIHELQDAVENLLMAGPYKAVARHYIEYRHDRDLCREAKSKLNQQILGL----VEQS 108

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183
           D  L++ N+ +   ++      L  + +K    
Sbjct: 109 DAALLNENANKDAKVIPTQRDLLAGIVAKHYAK 141


>gi|258623425|ref|ZP_05718428.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM573]
 gi|262164241|ref|ZP_06031979.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus VM223]
 gi|258584240|gb|EEW08986.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio mimicus
           VM573]
 gi|262026621|gb|EEY45288.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio mimicus VM223]
          Length = 706

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------ADHADQEIAIYALNVALAVELKLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103



 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-----KIVLSETYKNMYDGLSESDLETA 201
           ++  DG+   FN  R++  VE A        +       +  E     Y+ +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAADHADQEIAIYALNVALAVELKLKGYEEVHIAEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIEGLIQESNADLLNEN 117


>gi|324112138|gb|EGC06116.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           fergusonii B253]
          Length = 712

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  SQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|294786353|ref|ZP_06751607.1| anaerobic ribonucleoside-triphosphate reductase [Parascardovia
           denticolens F0305]
 gi|315225896|ref|ZP_07867684.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Parascardovia denticolens DSM 10105]
 gi|294485186|gb|EFG32820.1| anaerobic ribonucleoside-triphosphate reductase [Parascardovia
           denticolens F0305]
 gi|315120028|gb|EFT83160.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Parascardovia denticolens DSM 10105]
          Length = 797

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 10/173 (5%)

Query: 12  EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71
           E      A    +  + ++V KR+G +  FD   I  AI  +F   +G         + +
Sbjct: 2   EQLVADAAVRTHDVDETIKVEKRDGRIVPFDRVNIIHAIEGSF---KGSHVEVGPEEERL 58

Query: 72  IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           I+ + ++  + +         V I+DIQ  VE  L+    + I + Y  YR ++   RA 
Sbjct: 59  IEQMAQRVESAVTGRY--NGPVRIDDIQSLVEHELVNEHLYDIAKAYTSYRLDKDIKRAK 116

Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            S            K++  D +L+  N+ +   +       L    SK    +
Sbjct: 117 ASDVNEAIK-----KLINKDESLVRENANKDSNVYATQRDLLAGTVSKASAMK 164


>gi|218551536|ref|YP_002385328.1| anaerobic ribonucleoside triphosphate reductase [Escherichia
           fergusonii ATCC 35469]
 gi|331681261|ref|ZP_08381898.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H299]
 gi|218359078|emb|CAQ91739.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           fergusonii ATCC 35469]
 gi|320193644|gb|EFW68279.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           WV_060327]
 gi|323965629|gb|EGB61083.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M863]
 gi|325499798|gb|EGC97657.1| anaerobic ribonucleoside triphosphate reductase [Escherichia
           fergusonii ECD227]
 gi|327250183|gb|EGE61902.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           STEC_7v]
 gi|331081482|gb|EGI52643.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H299]
          Length = 712

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  SQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|322388113|ref|ZP_08061719.1| ATP cone domain protein [Streptococcus infantis ATCC 700779]
 gi|322392172|ref|ZP_08065634.1| ATP cone domain protein [Streptococcus peroris ATCC 700780]
 gi|321141134|gb|EFX36633.1| ATP cone domain protein [Streptococcus infantis ATCC 700779]
 gi|321145072|gb|EFX40471.1| ATP cone domain protein [Streptococcus peroris ATCC 700780]
          Length = 112

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGQVADFDPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVEHRLLGAGYITIAEHYISYRLQRDLER 95



 Score = 38.7 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  DG +  F+  ++   + +A   +  +    +  L++  K +   L E+ +E A 
Sbjct: 1   MQVIKRDGQVADFDPDKIYQAILKAAQTVYVLTDDLRQNLAQVTKKVVLDLEEAKVERAT 60

Query: 203 IFSSRTLIEKE---PNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           I   ++++E       Y  +   ++  +L+R++  + Y        H
Sbjct: 61  ISMIQSMVEHRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLH 107


>gi|332202118|gb|EGJ16187.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA41317]
          Length = 735

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLDDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLDDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|323481675|gb|ADX81114.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis 62]
          Length = 726

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 13  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 69

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 70  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 122

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 123 KLINKDQTVVNENANK 138


>gi|312902577|ref|ZP_07761783.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0635]
 gi|310634247|gb|EFQ17530.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0635]
 gi|315579613|gb|EFU91804.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0630]
          Length = 727

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|307126423|ref|YP_003878454.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 670-6B]
 gi|306483485|gb|ADM90354.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 670-6B]
 gi|332076649|gb|EGI87111.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA17545]
          Length = 735

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|301793476|emb|CBW35849.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae INV104]
          Length = 735

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|148987939|ref|ZP_01819402.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147926403|gb|EDK77476.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 735

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|148983601|ref|ZP_01816920.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP3-BS71]
 gi|148992779|ref|ZP_01822422.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP9-BS68]
 gi|149011071|ref|ZP_01832376.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP19-BS75]
 gi|168483839|ref|ZP_02708791.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486030|ref|ZP_02710538.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489680|ref|ZP_02713879.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP195]
 gi|168493896|ref|ZP_02718039.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC3059-06]
 gi|169832955|ref|YP_001693735.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|221231107|ref|YP_002510259.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225853809|ref|YP_002735321.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae JJA]
 gi|225858057|ref|YP_002739567.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae 70585]
 gi|225860244|ref|YP_002741753.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229095|ref|ZP_06962776.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255981|ref|ZP_06979567.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|303259255|ref|ZP_07345233.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261010|ref|ZP_07346959.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303263338|ref|ZP_07349261.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS397]
 gi|303265503|ref|ZP_07351403.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS457]
 gi|303267939|ref|ZP_07353741.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS458]
 gi|147764707|gb|EDK71637.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147923748|gb|EDK74860.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147928505|gb|EDK79520.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168995457|gb|ACA36069.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042826|gb|EDT50872.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1873-00]
 gi|183570916|gb|EDT91444.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183571822|gb|EDT92350.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP195]
 gi|183576223|gb|EDT96751.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae CDC3059-06]
 gi|220673567|emb|CAR68053.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225721134|gb|ACO16988.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae 70585]
 gi|225723312|gb|ACO19165.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae JJA]
 gi|225727716|gb|ACO23567.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|301799352|emb|CBW31887.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae OXC141]
 gi|301801147|emb|CBW33820.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae INV200]
 gi|302637847|gb|EFL68333.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639673|gb|EFL70130.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP-BS293]
 gi|302642635|gb|EFL72980.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS458]
 gi|302644943|gb|EFL75190.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS457]
 gi|302647111|gb|EFL77335.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae BS397]
 gi|327390622|gb|EGE88962.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA04375]
 gi|332075868|gb|EGI86335.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA17570]
 gi|332077504|gb|EGI87965.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA41301]
 gi|332203368|gb|EGJ17435.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA47368]
          Length = 735

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|148996624|ref|ZP_01824342.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168576370|ref|ZP_02722253.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae MLV-016]
 gi|307066880|ref|YP_003875846.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|147757199|gb|EDK64238.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183577900|gb|EDT98428.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae MLV-016]
 gi|306408417|gb|ADM83844.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|332204211|gb|EGJ18276.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae GA47901]
          Length = 735

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|209809560|ref|YP_002265099.1| anaerobic ribonucleoside triphosphate reductase [Aliivibrio
           salmonicida LFI1238]
 gi|208011123|emb|CAQ81545.1| anaerobic ribonucleoside-triphosphate reductase [Aliivibrio
           salmonicida LFI1238]
          Length = 706

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +++ S+I  A+  A           S +V   I++  +     +    +  
Sbjct: 5   VIKRDGSRAAYENSRIIDAVKGA-----------SEQVTPEIESYAQLVAHAVEVALQGQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKI-TREYVLYREERSDVRAAQSHSKSDAP 140
             V I  IQD VE  LM  G HK+  R Y+ YR +R   R   S    +  
Sbjct: 54  KEVGIRQIQDLVENELM-QGPHKVLARAYIEYRHDRDIAREKISVLNKEIS 103


>gi|315151788|gb|EFT95804.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0012]
          Length = 727

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|307271805|ref|ZP_07553076.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0855]
 gi|306511683|gb|EFM80682.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0855]
          Length = 727

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|227519463|ref|ZP_03949512.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX0104]
 gi|229544864|ref|ZP_04433589.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX1322]
 gi|227073075|gb|EEI11038.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX0104]
 gi|229310032|gb|EEN76019.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis TX1322]
 gi|315025480|gb|EFT37412.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2137]
 gi|315032604|gb|EFT44536.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0017]
 gi|315155614|gb|EFT99630.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0043]
          Length = 727

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|323171679|gb|EFZ57325.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           LT-68]
          Length = 712

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|315173494|gb|EFU17511.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1346]
          Length = 727

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|312906437|ref|ZP_07765445.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 512]
 gi|310627591|gb|EFQ10874.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 512]
          Length = 727

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|29377228|ref|NP_816382.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis V583]
 gi|227554237|ref|ZP_03984284.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis HH22]
 gi|229549131|ref|ZP_04437856.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis ATCC 29200]
 gi|294779724|ref|ZP_06745112.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis PC1.1]
 gi|300860551|ref|ZP_07106638.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|307269217|ref|ZP_07550571.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4248]
 gi|307276990|ref|ZP_07558100.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2134]
 gi|307278683|ref|ZP_07559751.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0860]
 gi|307288628|ref|ZP_07568609.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0109]
 gi|307290242|ref|ZP_07570158.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0411]
 gi|312900113|ref|ZP_07759429.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0470]
 gi|312951928|ref|ZP_07770816.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0102]
 gi|29344694|gb|AAO82452.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis V583]
 gi|227176637|gb|EEI57609.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis HH22]
 gi|229305756|gb|EEN71752.1| anaerobic ribonucleoside triphosphate reductase [Enterococcus
           faecalis ATCC 29200]
 gi|294453215|gb|EFG21629.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis PC1.1]
 gi|300849590|gb|EFK77340.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498663|gb|EFM68164.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0411]
 gi|306500382|gb|EFM69718.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0109]
 gi|306504623|gb|EFM73825.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0860]
 gi|306506413|gb|EFM75573.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2134]
 gi|306514436|gb|EFM82997.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4248]
 gi|310630117|gb|EFQ13400.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0102]
 gi|311292748|gb|EFQ71304.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0470]
 gi|315030426|gb|EFT42358.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4000]
 gi|315035125|gb|EFT47057.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0027]
 gi|315148715|gb|EFT92731.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX4244]
 gi|315154283|gb|EFT98299.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0031]
 gi|315159625|gb|EFU03642.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0312]
 gi|315162082|gb|EFU06099.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0645]
 gi|315165321|gb|EFU09338.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1302]
 gi|315168735|gb|EFU12752.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1341]
 gi|315170449|gb|EFU14466.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1342]
 gi|315573791|gb|EFU85982.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0309B]
 gi|315580303|gb|EFU92494.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX0309A]
 gi|327535968|gb|AEA94802.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Enterococcus faecalis OG1RF]
          Length = 727

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|187731109|ref|YP_001882978.1| anaerobic ribonucleoside triphosphate reductase [Shigella boydii
           CDC 3083-94]
 gi|187428101|gb|ACD07375.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           CDC 3083-94]
          Length = 712

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|315617655|gb|EFU98261.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           3431]
          Length = 712

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  I+               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAIVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  SQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|302858564|gb|ADL71310.1| gp50 [Mycobacterium phage Eagle]
          Length = 677

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 154/475 (32%), Gaps = 113/475 (23%)

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I    G   G+   +++ +  A  V  GG R+ A  + +      +EEF+  ++ TG   
Sbjct: 238 IATVGGSLNGIAA-MEIDHAIAQCVVAGGVRRSARMSMMHWQDPQIEEFVRCKQETG--- 293

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +    N +  + DLF   +      ++   D+                           
Sbjct: 294 -KHWTTNISVVVDDLFWTALNMPNQVSIMVRDQ--------------------------- 325

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
                   A    + +   +   G P        N   P      V  +N C EITL   
Sbjct: 326 --------AHKALKWITDGMVANGEPGFWDSSLSNQGEPN----EVVCTNPCGEITL--- 370

Query: 594 SEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
            +E   CNLG INL A   +N + D   L  + R   R L      +     K+++    
Sbjct: 371 -QEWEPCNLGHINLAAFVKDNGKVDTIDLIRSHRLMARFL-IRATFSAVGDPKSREVLDR 428

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G +G  S L +    Y+                                     
Sbjct: 429 NRRIGVGHLGVASYLAMTGRRYS------------------------------------- 451

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                    P+D             + ++++    EL+  V            +APT TI
Sbjct: 452 -------KAPLDKHFRKTLRELAKEVEQSAQQFSHELRIPV------PVKTRTVAPTGTI 498

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE-------AMISDLK 825
           A + GVS+ I P +   + +      F+  ++ L   L  +    E        ++  + 
Sbjct: 499 AKMPGVSEGIHPIFAKYFNRRIR---FSKGDAELEK-LIDQGYDFEPCQYAQNTVVVTIP 554

Query: 826 YHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLD 878
             D  +   ++R   D ++I  +A ++    L+   +  Q  W D A S    +D
Sbjct: 555 TKDTLVQEVVDRFGRDAEEIVESAEDLTLNQLLAFQAMYQMLWADNAVSFTANVD 609


>gi|218702942|ref|YP_002410571.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           IAI39]
 gi|218372928|emb|CAR20810.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IAI39]
          Length = 712

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|293384613|ref|ZP_06630478.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis R712]
 gi|293386751|ref|ZP_06631322.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis S613]
 gi|312979405|ref|ZP_07791093.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 516]
 gi|291078071|gb|EFE15435.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis R712]
 gi|291083754|gb|EFE20717.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis S613]
 gi|311287776|gb|EFQ66332.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis DAPTO 516]
          Length = 727

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|257090991|ref|ZP_05585352.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis CH188]
 gi|256999803|gb|EEU86323.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis CH188]
          Length = 730

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|170767095|ref|ZP_02901548.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           albertii TW07627]
 gi|170124533|gb|EDS93464.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia
           albertii TW07627]
          Length = 712

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  I+               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAIVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  SQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|182683182|ref|YP_001834929.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CGSP14]
 gi|182628516|gb|ACB89464.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CGSP14]
          Length = 737

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 5   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 64

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 65  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|74314715|ref|YP_313134.1| anaerobic ribonucleoside triphosphate reductase [Shigella sonnei
           Ss046]
 gi|73858192|gb|AAZ90899.1| anaerobic ribonucleoside-triphosphate reductase [Shigella sonnei
           Ss046]
 gi|323166725|gb|EFZ52483.1| anaerobic ribonucleoside-triphosphate reductase [Shigella sonnei
           53G]
          Length = 712

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|146310102|ref|YP_001175176.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter sp.
           638]
 gi|145316978|gb|ABP59125.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter sp.
           638]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E    ++ + ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEIVSQQMNERSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   H ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPHKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|170021751|ref|YP_001726705.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           ATCC 8739]
 gi|193069836|ref|ZP_03050786.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E110019]
 gi|218561398|ref|YP_002394311.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           S88]
 gi|256025176|ref|ZP_05439041.1| anaerobic ribonucleoside triphosphate reductase [Escherichia sp.
           4_1_40B]
 gi|307312986|ref|ZP_07592614.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|312973946|ref|ZP_07788117.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1827-70]
 gi|331671145|ref|ZP_08371978.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA271]
 gi|169756679|gb|ACA79378.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ATCC 8739]
 gi|192956890|gb|EDV87343.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E110019]
 gi|218368167|emb|CAR05976.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           S88]
 gi|306907154|gb|EFN37661.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|309704744|emb|CBJ04095.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ETEC H10407]
 gi|310331480|gb|EFP98736.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1827-70]
 gi|315063548|gb|ADT77875.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           W]
 gi|320200633|gb|EFW75219.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           EC4100B]
 gi|323380372|gb|ADX52640.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           KO11]
 gi|323935363|gb|EGB31711.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E1520]
 gi|323940158|gb|EGB36352.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E482]
 gi|323945973|gb|EGB42011.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H120]
 gi|331061734|gb|EGI33660.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA271]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|328956597|ref|YP_004373983.1| anaerobic ribonucleoside-triphosphate reductase [Carnobacterium sp.
           17-4]
 gi|328672921|gb|AEB28967.1| anaerobic ribonucleoside-triphosphate reductase [Carnobacterium sp.
           17-4]
          Length = 738

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G    F   KI  A++KA  ++E +    ++     +K +  +    + +   
Sbjct: 18  LKVLKRDGREVEFKEEKIFSALLKAHQSLEKETDKETV---KELKGIVTKVKEEIAKRFS 74

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           +   + I +IQ  VE +L+ +  H +   Y+LYR  R   R+ 
Sbjct: 75  AD--IKIYEIQSIVEHTLLDAHEHDLAEAYLLYRSRRDLERSQ 115



 Score = 38.7 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
            +  S  +      LK++  DG  + F  +++   + +A   L+  + K  + E  K + 
Sbjct: 4   EKDVSICEISNKHLLKVLKRDGREVEFKEEKIFSALLKAHQSLEKETDKETVKE-LKGIV 62

Query: 191 DGLSES-------DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
             + E        D++   I S       + +   +   +LL + RR++  +       A
Sbjct: 63  TKVKEEIAKRFSADIKIYEIQSIVEHTLLDAHEHDLAEAYLLYRSRRDLERSQSTDINYA 122

Query: 244 THH 246
            HH
Sbjct: 123 IHH 125


>gi|194433892|ref|ZP_03066165.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1012]
 gi|194417873|gb|EDX33969.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1012]
 gi|320177637|gb|EFW52627.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           ATCC 9905]
 gi|332083239|gb|EGI88470.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           5216-82]
 gi|332083702|gb|EGI88920.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 155-74]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|188494309|ref|ZP_03001579.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           53638]
 gi|191167267|ref|ZP_03029085.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B7A]
 gi|188489508|gb|EDU64611.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           53638]
 gi|190902720|gb|EDV62451.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B7A]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|16132060|ref|NP_418659.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89110956|ref|AP_004736.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157163713|ref|YP_001461031.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           HS]
 gi|170083679|ref|YP_001732999.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|193063742|ref|ZP_03044830.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E22]
 gi|194426625|ref|ZP_03059179.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B171]
 gi|194437791|ref|ZP_03069886.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           101-1]
 gi|209921734|ref|YP_002295818.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           SE11]
 gi|218556788|ref|YP_002389702.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           IAI1]
 gi|218707847|ref|YP_002415366.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UMN026]
 gi|238903341|ref|YP_002929137.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           BW2952]
 gi|253775137|ref|YP_003037968.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037259|ref|ZP_04871336.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           1_1_43]
 gi|254164165|ref|YP_003047275.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli B
           str. REL606]
 gi|256019890|ref|ZP_05433755.1| anaerobic ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|260858393|ref|YP_003232284.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O26:H11 str. 11368]
 gi|260870993|ref|YP_003237395.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O111:H- str. 11128]
 gi|293402863|ref|ZP_06646960.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           FVEC1412]
 gi|293417740|ref|ZP_06660362.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B185]
 gi|293476542|ref|ZP_06664950.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B088]
 gi|298378391|ref|ZP_06988275.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           FVEC1302]
 gi|301028070|ref|ZP_07191351.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 196-1]
 gi|307140932|ref|ZP_07500288.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           H736]
 gi|312965919|ref|ZP_07780145.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           2362-75]
 gi|331644987|ref|ZP_08346104.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H736]
 gi|331656073|ref|ZP_08357061.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M718]
 gi|331680375|ref|ZP_08381034.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H591]
 gi|332281030|ref|ZP_08393443.1| ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|34395948|sp|P28903|NRDD_ECOLI RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|537080|gb|AAA97135.1| ribonucleoside triphosphate reductase [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790686|gb|AAC77195.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85676987|dbj|BAE78237.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K12 substr. W3110]
 gi|157069393|gb|ABV08648.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           HS]
 gi|169891514|gb|ACB05221.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|192930729|gb|EDV83335.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E22]
 gi|194415364|gb|EDX31632.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B171]
 gi|194423287|gb|EDX39279.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           101-1]
 gi|209914993|dbj|BAG80067.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SE11]
 gi|218363557|emb|CAR01212.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IAI1]
 gi|218434944|emb|CAR15883.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           UMN026]
 gi|226840365|gb|EEH72367.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           1_1_43]
 gi|238859989|gb|ACR61987.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           BW2952]
 gi|242379760|emb|CAQ34587.1| ribonucleoside-triphosphate reductase, subunit of anaerobic
           nucleoside-triphosphate reductase activating system
           [Escherichia coli BL21(DE3)]
 gi|253326181|gb|ACT30783.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976068|gb|ACT41739.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli B
           str. REL606]
 gi|253980224|gb|ACT45894.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           BL21(DE3)]
 gi|257757042|dbj|BAI28544.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O26:H11 str. 11368]
 gi|257767349|dbj|BAI38844.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O111:H- str. 11128]
 gi|260450939|gb|ACX41361.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           DH1]
 gi|284924412|emb|CBG37536.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           042]
 gi|291320995|gb|EFE60437.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B088]
 gi|291429778|gb|EFF02792.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           FVEC1412]
 gi|291430458|gb|EFF03456.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B185]
 gi|298280725|gb|EFI22226.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           FVEC1302]
 gi|299878843|gb|EFI87054.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 196-1]
 gi|312289162|gb|EFR17056.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           2362-75]
 gi|315138791|dbj|BAJ45950.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           DH1]
 gi|320175802|gb|EFW50886.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae CDC 74-1112]
 gi|323157557|gb|EFZ43666.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           EPECa14]
 gi|323162035|gb|EFZ47907.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E128010]
 gi|323176153|gb|EFZ61745.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1180]
 gi|323970506|gb|EGB65765.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA007]
 gi|323975417|gb|EGB70518.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TW10509]
 gi|324118800|gb|EGC12692.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E1167]
 gi|331035962|gb|EGI08200.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H736]
 gi|331046427|gb|EGI18517.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M718]
 gi|331071838|gb|EGI43174.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H591]
 gi|332103382|gb|EGJ06728.1| ribonucleoside triphosphate reductase [Shigella sp. D9]
 gi|332346317|gb|AEE59651.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Escherichia
           coli UMNK88]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|325697285|gb|EGD39171.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK160]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|325686730|gb|EGD28756.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK72]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|324992630|gb|EGC24551.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK405]
 gi|324995841|gb|EGC27752.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK678]
 gi|327460033|gb|EGF06372.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1]
 gi|327472179|gb|EGF17616.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK408]
 gi|327488623|gb|EGF20423.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1058]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|60416873|emb|CAD71196.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 73

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906
           A+++D   +++  +  Q+ +DQ  S  L+L +  + + L+ I   A   G+KT YY R++
Sbjct: 2   AYDMDMFKVVDLIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 61

Query: 907 SATS 910
             T 
Sbjct: 62  DTTQ 65


>gi|324989646|gb|EGC21590.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK353]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|257087719|ref|ZP_05582080.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis D6]
 gi|257416922|ref|ZP_05593916.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257421637|ref|ZP_05598627.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis X98]
 gi|256995749|gb|EEU83051.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis D6]
 gi|257158750|gb|EEU88710.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           ARO1/DG]
 gi|257163461|gb|EEU93421.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis X98]
          Length = 730

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|257084282|ref|ZP_05578643.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis Fly1]
 gi|256992312|gb|EEU79614.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis Fly1]
          Length = 730

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|256963857|ref|ZP_05568028.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|256954353|gb|EEU70985.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           HIP11704]
          Length = 730

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|256616745|ref|ZP_05473591.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256596272|gb|EEU15448.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis ATCC
           4200]
          Length = 730

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|255971849|ref|ZP_05422435.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T1]
 gi|255974846|ref|ZP_05425432.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T2]
 gi|256763375|ref|ZP_05503955.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T3]
 gi|256854049|ref|ZP_05559414.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis T8]
 gi|256957980|ref|ZP_05562151.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis DS5]
 gi|257079917|ref|ZP_05574278.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis JH1]
 gi|257420141|ref|ZP_05597135.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T11]
 gi|255962867|gb|EET95343.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T1]
 gi|255967718|gb|EET98340.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T2]
 gi|256684626|gb|EEU24321.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T3]
 gi|256710992|gb|EEU26035.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis T8]
 gi|256948476|gb|EEU65108.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis DS5]
 gi|256987947|gb|EEU75249.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis JH1]
 gi|257161969|gb|EEU91929.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis T11]
          Length = 730

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|332365289|gb|EGJ43052.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1059]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|261883922|ref|ZP_06007961.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 160

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897
            +L +   TA E+ P    +     Q+W+D + S  +      + ++++ +Y + +  G 
Sbjct: 8   QNLPEWFVTAMELAPEAHADVQCIIQRWVDSSISKTVNAPRGYTVEQVEKVYERLYKGGA 67

Query: 898 KTTYYLRSRSATSV------------EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945
           K        S  S             E++ ++    +   V + +      S  +     
Sbjct: 68  KGGTVYVDGSRDSQVLTLKAEENSLEEQTDIQDKVVEKRPVVLIETIQDLRSTNVTIGSE 127

Query: 946 SDTECEVC 953
               C VC
Sbjct: 128 VGNTCPVC 135


>gi|225855968|ref|YP_002737479.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae P1031]
 gi|225726017|gb|ACO21869.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae P1031]
          Length = 737

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 5   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 64

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 65  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|149005952|ref|ZP_01829681.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP18-BS74]
 gi|298502017|ref|YP_003723957.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147762308|gb|EDK69269.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae SP18-BS74]
 gi|298237612|gb|ADI68743.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 737

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 5   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 64

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 65  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|332363726|gb|EGJ41506.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK49]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|325680853|ref|ZP_08160391.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
 gi|324107633|gb|EGC01911.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus albus
           8]
          Length = 723

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    FD SKI  A+ KA  A E    S      + I ++T+       + NK
Sbjct: 1   MKIIKRNGAEEIFDQSKIINAVKKANFAGEKGRIS-----DEEIADVTDYVE---YKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKIT 115
               V +E+IQD VE  LM  G  ++ 
Sbjct: 53  LGRAVSVEEIQDMVENQLMAKGAFELA 79


>gi|256961001|ref|ZP_05565172.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           Merz96]
 gi|256951497|gb|EEU68129.1| ribonucleoside-triphosphate reductase [Enterococcus faecalis
           Merz96]
          Length = 730

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|327467918|gb|EGF13408.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK330]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|257081685|ref|ZP_05576046.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Enterococcus faecalis E1Sol]
 gi|256989715|gb|EEU77017.1| anaerobic ribonucleoside-triphosphate reductase activating protein
           [Enterococcus faecalis E1Sol]
          Length = 730

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 17  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 73

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 74  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDINVSIG----- 126

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 127 KLINKDQTVVNENANK 142


>gi|149017891|ref|ZP_01834350.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147931455|gb|EDK82433.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 735

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD +KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVNKIDKALHKA----ADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.0 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVNKIDKALHKAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|332360461|gb|EGJ38272.1| ATP cone domain protein [Streptococcus sanguinis SK355]
          Length = 112

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVDFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVESRLLGAGYITIAEHYISYRLQRDLER 95


>gi|325688821|gb|EGD30829.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK115]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|323960281|gb|EGB55922.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H489]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|323350681|ref|ZP_08086342.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis VMC66]
 gi|322123101|gb|EFX94792.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis VMC66]
          Length = 731

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|82546515|ref|YP_410462.1| anaerobic ribonucleoside triphosphate reductase [Shigella boydii
           Sb227]
 gi|81247926|gb|ABB68634.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           Sb227]
 gi|320185332|gb|EFW60104.1| anaerobic ribonucleoside triphosphate reductase [Shigella flexneri
           CDC 796-83]
 gi|332087111|gb|EGI92245.1| anaerobic ribonucleoside-triphosphate reductase [Shigella boydii
           3594-74]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|332360137|gb|EGJ37951.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1056]
          Length = 756

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +      A
Sbjct: 41  VEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEISSRF--A 94

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 95  KYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 140


>gi|325695345|gb|EGD37245.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK150]
          Length = 732

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 65

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 66  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 116


>gi|146970|gb|AAA24226.1| ribonucleoside triphosphate reductase [Escherichia coli str. K-12
           substr. W3110]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|82779300|ref|YP_405649.1| anaerobic ribonucleoside triphosphate reductase [Shigella
           dysenteriae Sd197]
 gi|81243448|gb|ABB64158.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae Sd197]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|15804828|ref|NP_290869.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 EDL933]
 gi|15834469|ref|NP_313242.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751072|ref|ZP_02776094.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754815|ref|ZP_02779822.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760488|ref|ZP_02785495.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766524|ref|ZP_02791531.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774045|ref|ZP_02799052.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168782760|ref|ZP_02807767.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784883|ref|ZP_02809890.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC869]
 gi|168797813|ref|ZP_02822820.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC508]
 gi|195937263|ref|ZP_03082645.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808013|ref|ZP_03250350.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811996|ref|ZP_03253325.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820712|ref|ZP_03261032.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209395826|ref|YP_002273781.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325941|ref|ZP_03442025.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796258|ref|YP_003081095.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225358|ref|ZP_05939639.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255389|ref|ZP_05947922.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291285651|ref|YP_003502469.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O55:H7 str. CB9615]
 gi|12519242|gb|AAG59435.1|AE005656_3 anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13364692|dbj|BAB38638.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770204|gb|EDU34048.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014840|gb|EDU52962.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188999753|gb|EDU68739.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357853|gb|EDU76272.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364193|gb|EDU82612.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368865|gb|EDU87281.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374739|gb|EDU93155.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC869]
 gi|189379431|gb|EDU97847.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727814|gb|EDZ77415.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733273|gb|EDZ81960.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740835|gb|EDZ88517.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157226|gb|ACI34659.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209749668|gb|ACI73141.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749670|gb|ACI73142.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749672|gb|ACI73143.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749674|gb|ACI73144.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|209749676|gb|ACI73145.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli]
 gi|217322162|gb|EEC30586.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595658|gb|ACT75019.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290765524|gb|ADD59485.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190629|gb|EFW65279.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320638997|gb|EFX08643.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. G5101]
 gi|320644366|gb|EFX13431.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649684|gb|EFX18208.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H- str. H 2687]
 gi|320655080|gb|EFX23041.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660587|gb|EFX28048.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665856|gb|EFX32893.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326345429|gb|EGD69172.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346713|gb|EGD70447.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O157:H7 str. 1044]
          Length = 712

 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|260847071|ref|YP_003224849.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O103:H2 str. 12009]
 gi|257762218|dbj|BAI33715.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O103:H2 str. 12009]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|294055877|ref|YP_003549535.1| anaerobic ribonucleoside-triphosphate reductase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615210|gb|ADE55365.1| anaerobic ribonucleoside-triphosphate reductase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 724

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 11  DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
              A  S  +  P  +    VIKR+G  + +   +I++A+ KA          +S++++D
Sbjct: 4   TSSAIQSTLFDTPNSLPYPLVIKRDGTHSPYSAERIAQAVYKA---------GQSMQIED 54

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
                  Q    +         + + +IQ  VE  LM   H ++ R Y+ +R +R+  R 
Sbjct: 55  FAY--AGQVTAAVTAKLIGTQEICVTEIQKLVEDELMSGPHKELARAYIEFRHDRNVARE 112

Query: 131 AQSHSKSD 138
             S    +
Sbjct: 113 RVSKLSRE 120


>gi|229523013|ref|ZP_04412425.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TM 11079-80]
 gi|229339863|gb|EEO04873.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TM 11079-80]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 45.2 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|254285124|ref|ZP_04960090.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           AM-19226]
 gi|150425127|gb|EDN16904.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           AM-19226]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 45.2 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|327463474|gb|EGF09793.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK1057]
          Length = 732

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 65

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 66  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 116


>gi|323181971|gb|EFZ67382.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           1357]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|26251144|ref|NP_757184.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           CFT073]
 gi|91213791|ref|YP_543777.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UTI89]
 gi|110644599|ref|YP_672329.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           536]
 gi|117626584|ref|YP_859907.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           APEC O1]
 gi|191170771|ref|ZP_03032323.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           F11]
 gi|237703913|ref|ZP_04534394.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           3_2_53FAA]
 gi|306815544|ref|ZP_07449693.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           NC101]
 gi|331650369|ref|ZP_08351441.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M605]
 gi|331660818|ref|ZP_08361750.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA206]
 gi|26111576|gb|AAN83758.1|AE016771_269 Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           CFT073]
 gi|91075365|gb|ABE10246.1| NrdD subunit of ribonucleoside-triphosphate reductase and anaerobic
           nucleoside-triphosphate reductase activating system
           [Escherichia coli UTI89]
 gi|110346191|gb|ABG72428.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           536]
 gi|115515708|gb|ABJ03783.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           APEC O1]
 gi|190908995|gb|EDV68582.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           F11]
 gi|222036011|emb|CAP78756.1| Anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           LF82]
 gi|226901825|gb|EEH88084.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia sp.
           3_2_53FAA]
 gi|281181337|dbj|BAI57667.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SE15]
 gi|294490614|gb|ADE89370.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           IHE3034]
 gi|305851206|gb|EFM51661.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           NC101]
 gi|307556410|gb|ADN49185.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ABU 83972]
 gi|307629314|gb|ADN73618.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           UM146]
 gi|312948891|gb|ADR29718.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|323950691|gb|EGB46569.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H252]
 gi|323955527|gb|EGB51291.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           H263]
 gi|330908585|gb|EGH37104.1| ribonucleotide reductase of class 3 (anaerobic), large subunit
           [Escherichia coli AA86]
 gi|331040763|gb|EGI12921.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           M605]
 gi|331051860|gb|EGI23899.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA206]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|254226501|ref|ZP_04920085.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V51]
 gi|125620958|gb|EAZ49308.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V51]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 45.2 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|323189881|gb|EFZ75159.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           RN587/1]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    +      ++   N+  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAEVDDDDYCATVAAVVSEQMQGRNQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|218692626|ref|YP_002400838.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           ED1a]
 gi|218430190|emb|CAR11048.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           ED1a]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|170681280|ref|YP_001746642.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           SMS-3-5]
 gi|218697988|ref|YP_002405655.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           55989]
 gi|293407962|ref|ZP_06651802.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B354]
 gi|331665909|ref|ZP_08366803.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA143]
 gi|331671386|ref|ZP_08372184.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA280]
 gi|170518998|gb|ACB17176.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           SMS-3-5]
 gi|218354720|emb|CAV01764.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           55989]
 gi|291472213|gb|EFF14695.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           B354]
 gi|331056960|gb|EGI28954.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA143]
 gi|331071231|gb|EGI42588.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           TA280]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|66391367|ref|YP_238600.1| ORF118 [Staphylococcus phage Twort]
 gi|62637297|gb|AAX92408.1| ORF118 [Staphylococcus phage Twort]
          Length = 108

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905
           TA+++D   +I +++  QK +DQA S  LY++ E    KL  +Y  AW  GLK+ YY RS
Sbjct: 36  TAYKLDNKRIINTSAVIQKHVDQAISTILYVESEIPTNKLVSLYYYAWEKGLKSLYYTRS 95

Query: 906 RSATSVE 912
           ++   +E
Sbjct: 96  QTLKVIE 102


>gi|313676821|ref|YP_004054817.1| anaerobic ribonucleoside-triphosphate reductase [Marivirga
           tractuosa DSM 4126]
 gi|312943519|gb|ADR22709.1| anaerobic ribonucleoside-triphosphate reductase [Marivirga
           tractuosa DSM 4126]
          Length = 702

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG        KI  AI KAF +V  +                   +  +L+  +  
Sbjct: 5   VIKRNGEYQPLKHYKIEDAIKKAFKSVGVEYDVI--------------ILKSVLEKLEEK 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
               +E+IQD +E  L    + K+ R ++LYR  R   R  +   K D
Sbjct: 51  TTWAVEEIQDIIELQLYHYHYFKVMRSFMLYRHTRKLQRNQKKGIKHD 98


>gi|215489583|ref|YP_002332014.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215267655|emb|CAS12112.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    +      ++   N+  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAEVDDDDYCATVAAVVSEQMQGRNQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|153212457|ref|ZP_01948226.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           1587]
 gi|124116494|gb|EAY35314.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           1587]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|77407156|ref|ZP_00784145.1| Unknown [Streptococcus agalactiae H36B]
 gi|77174233|gb|EAO77113.1| Unknown [Streptococcus agalactiae H36B]
          Length = 112

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +AI+KA   V     S    +++ +  +T++ +  L     
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDES----LRZDLAQVTKKVILDLEDAQV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ER--PTINMIQSLVENRLLDAGYIHIAEHYISYRLQRDLER 95



 Score = 38.3 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK------IVLSETYKNMYDGLSESDL 198
           ++I+  DG ++ F+ +++   + +A   +  +          V  +   ++ D    + +
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRZDLAQVTKKVILDLED----AQV 56

Query: 199 ETALIFSSRTLIEK---EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           E   I   ++L+E    +  Y  +   ++  +L+R++    Y        H
Sbjct: 57  ERPTINMIQSLVENRLLDAGYIHIAEHYISYRLQRDLERNGYDDQITVHLH 107


>gi|157157950|ref|YP_001465747.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           E24377A]
 gi|157079980|gb|ABV19688.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           E24377A]
          Length = 712

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|312862463|ref|ZP_07722706.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           vestibularis F0396]
 gi|311102106|gb|EFQ60306.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           vestibularis F0396]
          Length = 734

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G +  FD SKI  AI+KA           +  ++  ++ +    +  +   
Sbjct: 13  PDIKVIKRDGRMVVFDSSKIYEAILKA----SEAITPITPIIETKLEGIATHILAEINDR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 + I +IQ  VE  L+++  + I +EY+ YR +R   R+  +   
Sbjct: 69  FSHN--IKIYEIQSIVEHELLEANEYAIAQEYINYRTKRDFERSQATDIN 116



 Score = 41.8 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            K    I P +K++  DG ++ F+S ++   + +A   +  ++             +L+E
Sbjct: 5   EKEKVTINPDIKVIKRDGRMVVFDSSKIYEAILKASEAITPITPIIETKLEGIATHILAE 64

Query: 185 TYKNMYDGLSESDLETAL 202
                   +   ++++ +
Sbjct: 65  INDRFSHNIKIYEIQSIV 82


>gi|15601271|ref|NP_232902.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae O1
           biovar eltor str. N16961]
 gi|121586449|ref|ZP_01676236.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           2740-80]
 gi|121726189|ref|ZP_01679487.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V52]
 gi|153819569|ref|ZP_01972236.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           NCTC 8457]
 gi|227812081|ref|YP_002812091.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           M66-2]
 gi|229506317|ref|ZP_04395826.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae BX 330286]
 gi|229509563|ref|ZP_04399045.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae B33]
 gi|229516616|ref|ZP_04406063.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC9]
 gi|229605868|ref|YP_002876572.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae
           MJ-1236]
 gi|254849674|ref|ZP_05239024.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MO10]
 gi|262151236|ref|ZP_06028373.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae INDRE 91/1]
 gi|9657915|gb|AAF96414.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121549274|gb|EAX59305.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           2740-80]
 gi|121631408|gb|EAX63780.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           V52]
 gi|126509879|gb|EAZ72473.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           NCTC 8457]
 gi|227011223|gb|ACP07434.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           M66-2]
 gi|229346497|gb|EEO11468.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC9]
 gi|229353513|gb|EEO18451.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae B33]
 gi|229356668|gb|EEO21586.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae BX 330286]
 gi|229372354|gb|ACQ62776.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae MJ-1236]
 gi|254845379|gb|EET23793.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MO10]
 gi|262031003|gb|EEY49630.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae INDRE 91/1]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|229513317|ref|ZP_04402782.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TMA 21]
 gi|229349727|gb|EEO14682.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae TMA 21]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|229526819|ref|ZP_04416223.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae bv. albensis VL426]
 gi|229527641|ref|ZP_04417032.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae 12129(1)]
 gi|229334003|gb|EEN99488.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae 12129(1)]
 gi|229336977|gb|EEO01995.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae bv. albensis VL426]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|222153086|ref|YP_002562263.1| ATP-binding protein [Streptococcus uberis 0140J]
 gi|222113899|emb|CAR42086.1| ATP-binding protein [Streptococcus uberis 0140J]
          Length = 112

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V           +  +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAAQTVY----VIDENWRQNLAQVTKKVVIDLEE--A 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  LM +G+  I   Y+ YR +R   R
Sbjct: 55  KVEKPTINMIQSLVENRLMDAGYINIAEHYISYRLQRDLER 95



 Score = 38.3 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETAL 202
           ++I+  DG +  F+  ++   + +A   +  +    +  L++  K +   L E+ +E   
Sbjct: 1   MQIIKRDGQVAEFDPDKIYQAIIKAAQTVYVIDENWRQNLAQVTKKVVIDLEEAKVEKPT 60

Query: 203 IFSSRTLIEK---EPNYAKVTARFLLEKLRREV 232
           I   ++L+E    +  Y  +   ++  +L+R++
Sbjct: 61  INMIQSLVENRLMDAGYINIAEHYISYRLQRDL 93


>gi|153809894|ref|ZP_01962562.1| hypothetical protein RUMOBE_00275 [Ruminococcus obeum ATCC 29174]
 gi|149834072|gb|EDM89152.1| hypothetical protein RUMOBE_00275 [Ruminococcus obeum ATCC 29174]
          Length = 763

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 70  DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           D+I  L  +         +    V +EDIQD VE  L+Q+G+  + + Y+LYR++R  +R
Sbjct: 10  DMIDLLALRVTADFQNKIQDGK-VTVEDIQDSVENVLIQAGYSDVAKAYILYRKQREKIR 68

Query: 130 AAQSHSKSDAPIAPKLKIMMDD 151
             +S       I     + ++D
Sbjct: 69  NMKSTILDYKEIVDS-YVKVED 89


>gi|329768462|ref|ZP_08259953.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans M341]
 gi|328836795|gb|EGF86445.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans M341]
          Length = 727

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                 +  + VIKR+G +  FD  KI +AI KA  +V GK  S +      I  + +  
Sbjct: 12  AKVDSLMNNLLVIKRDGRIVKFDAEKIYKAIEKAIHSVFGKNHSVN------IDGIVDNV 65

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139
           +  +    K    + I ++Q+ VE +L+  G   I  EYV YR  R   R          
Sbjct: 66  IIEIGNRFKDN--IKIYELQNIVEHTLLTLGEEAIYEEYVSYRSMRDIERERSLDINVAI 123

Query: 140 PIAPKLKIMMDDGTLISFNSKR 161
                 K++  D  +++ N+ +
Sbjct: 124 E-----KLVNRDENVVNENANK 140



 Score = 44.8 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 11/129 (8%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEA---------CSGLQDVSSKIVLSETYKNM 189
             +   L ++  DG ++ F+++++   +E+A            +  +    V+ E     
Sbjct: 15  DSLMNNLLVIKRDGRIVKFDAEKIYKAIEKAIHSVFGKNHSVNIDGI-VDNVIIEIGNRF 73

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
            D +   +L+  +  +  TL E+      V+ R  +  + RE    +    +K  + +  
Sbjct: 74  KDNIKIYELQNIVEHTLLTLGEEAIYEEYVSYR-SMRDIERERSLDINVAIEKLVNRDEN 132

Query: 250 CLYPEYFCR 258
            +       
Sbjct: 133 VVNENANKD 141


>gi|262403554|ref|ZP_06080112.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC586]
 gi|262350058|gb|EEY99193.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC586]
          Length = 706

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLKGY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 43.7 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSS-----KIVLSETYKNMYDGLSESDLETA 201
           ++  DG+   FN  R++  VE A        +       +  E     Y+ +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLKGYEEVHIAEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIEESNADLLNEN 117


>gi|327197765|ref|YP_004301463.1| gp130 [Brochothrix phage A9]
 gi|299810365|gb|ADJ53164.1| gp130 [Brochothrix phage A9]
          Length = 163

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 48/178 (26%)

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804
            + +++ ++  G+  S    I    +I  +   S SI P  Q +  +    +G       
Sbjct: 1   MESIEQFIRERGLC-SEQSRIHRNGSIGYVAEASPSIQPIIQRVEERQEKKTGKTYYPAP 59

Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864
                                          ++ D     + +A+++  + +I+  +   
Sbjct: 60  -------------------------------KLSDRTMPYYRSAYDMSMLDMIDVYAEAT 88

Query: 865 KWIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907
           K +DQ  S+++Y                +E + + L  +   A   G+K+ YY RS S
Sbjct: 89  KHVDQGISMSVYFAKHIKAGLYPWKTGDNEYNTRDLSLVRSYAHAKGIKSMYYTRSYS 146


>gi|294678858|ref|YP_003579473.1| anaerobic ribonucleoside-triphosphate reductase [Rhodobacter
           capsulatus SB 1003]
 gi|294477678|gb|ADE87066.1| anaerobic ribonucleoside-triphosphate reductase [Rhodobacter
           capsulatus SB 1003]
          Length = 676

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 17  SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76
             A   P     ++   R+G +  FD  +I  A+ +A       G +         ++LT
Sbjct: 5   DAALTAPAGFSTLRT--RDGALVPFDARRIVAALARA-------GDASGEFGAAEARDLT 55

Query: 77  EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           +  + RL     ++    +E IQ+ VE  L  + H    R Y +YR++ + +RA
Sbjct: 56  QAVLDRLALLAPAS-PPDVETIQNMVEAVLADTAHVATARAYAVYRDQHARLRA 108


>gi|237649729|ref|ZP_04523981.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821427|ref|ZP_04597272.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 735

 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVIDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.4 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVIDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|76787167|ref|YP_329761.1| ATP cone domain-containing protein [Streptococcus agalactiae A909]
 gi|77409851|ref|ZP_00786486.1| Unknown [Streptococcus agalactiae COH1]
 gi|77410524|ref|ZP_00786885.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77415022|ref|ZP_00791098.1| Unknown [Streptococcus agalactiae 515]
 gi|76562224|gb|ABA44808.1| ATP cone domain protein [Streptococcus agalactiae A909]
 gi|77158928|gb|EAO70163.1| Unknown [Streptococcus agalactiae 515]
 gi|77163472|gb|EAO74422.1| Unknown [Streptococcus agalactiae CJB111]
 gi|77171541|gb|EAO74775.1| Unknown [Streptococcus agalactiae COH1]
          Length = 112

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +AI+KA   V     S    ++  +  +T++ +  L     
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDES----LRQDLAQVTKKVILDLEDAQV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ER--PTINMIQSLVENRLLDAGYIHIAEHYISYRLQRDLER 95



 Score = 38.3 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK------IVLSETYKNMYDGLSESDL 198
           ++I+  DG ++ F+ +++   + +A   +  +          V  +   ++ D    + +
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDESLRQDLAQVTKKVILDLED----AQV 56

Query: 199 ETALIFSSRTLIEK---EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           E   I   ++L+E    +  Y  +   ++  +L+R++    Y        H
Sbjct: 57  ERPTINMIQSLVENRLLDAGYIHIAEHYISYRLQRDLERNGYDDQITVHLH 107


>gi|153830794|ref|ZP_01983461.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           623-39]
 gi|148873724|gb|EDL71859.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           623-39]
          Length = 579

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|147671741|ref|YP_001215286.1| anaerobic ribonucleoside triphosphate reductase [Vibrio cholerae
           O395]
 gi|262169066|ref|ZP_06036759.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC27]
 gi|146314124|gb|ABQ18664.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           O395]
 gi|227015436|gb|ACP11645.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           O395]
 gi|262022347|gb|EEY41055.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae RC27]
          Length = 706

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|153825874|ref|ZP_01978541.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-2]
 gi|149740474|gb|EDM54597.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-2]
          Length = 706

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A               Q+I+          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA----------AEHADQEIVIY-ALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIVIYALNVALAVELKLRDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|323351559|ref|ZP_08087213.1| ATP cone domain protein [Streptococcus sanguinis VMC66]
 gi|322122045|gb|EFX93771.1| ATP cone domain protein [Streptococcus sanguinis VMC66]
 gi|324991140|gb|EGC23074.1| ATP cone domain protein [Streptococcus sanguinis SK353]
 gi|324992890|gb|EGC24810.1| ATP cone domain protein [Streptococcus sanguinis SK405]
 gi|324994473|gb|EGC26386.1| ATP cone domain protein [Streptococcus sanguinis SK678]
 gi|325687472|gb|EGD29493.1| ATP cone domain protein [Streptococcus sanguinis SK72]
 gi|325689691|gb|EGD31695.1| ATP cone domain protein [Streptococcus sanguinis SK115]
 gi|325696517|gb|EGD38407.1| ATP cone domain protein [Streptococcus sanguinis SK160]
 gi|327460343|gb|EGF06680.1| ATP cone domain protein [Streptococcus sanguinis SK1057]
 gi|327462195|gb|EGF08522.1| ATP cone domain protein [Streptococcus sanguinis SK1]
 gi|327470024|gb|EGF15488.1| ATP cone domain protein [Streptococcus sanguinis SK330]
 gi|327474216|gb|EGF19623.1| ATP cone domain protein [Streptococcus sanguinis SK408]
 gi|327489683|gb|EGF21474.1| ATP cone domain protein [Streptococcus sanguinis SK1058]
 gi|328946296|gb|EGG40440.1| ATP cone domain protein [Streptococcus sanguinis SK1087]
 gi|332360873|gb|EGJ38679.1| ATP cone domain protein [Streptococcus sanguinis SK49]
 gi|332361190|gb|EGJ38994.1| ATP cone domain protein [Streptococcus sanguinis SK1056]
 gi|332366880|gb|EGJ44621.1| ATP cone domain protein [Streptococcus sanguinis SK1059]
          Length = 112

 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVESRLLGAGYITIAEHYISYRLQRDLER 95


>gi|315143853|gb|EFT87869.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX2141]
          Length = 727

 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +            
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFQRSKATDINVSIG----- 123

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D T+++ N+ +
Sbjct: 124 KLINKDQTVVNENANK 139


>gi|290512190|ref|ZP_06551557.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp.
           1_1_55]
 gi|289775185|gb|EFD83186.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp.
           1_1_55]
          Length = 712

 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A     A     V +++               +  
Sbjct: 5   VMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVSQ-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  AQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101


>gi|237729175|ref|ZP_04559656.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter sp.
           30_2]
 gi|226908904|gb|EEH94822.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter sp.
           30_2]
          Length = 712

 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++ + ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNERSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|206579484|ref|YP_002240794.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae 342]
 gi|206568542|gb|ACI10318.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae 342]
          Length = 712

 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A     A     V +++               +  
Sbjct: 5   VMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVSQ-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  AQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101


>gi|297519341|ref|ZP_06937727.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           OP50]
          Length = 455

 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|288937450|ref|YP_003441509.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           variicola At-22]
 gi|288892159|gb|ADC60477.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           variicola At-22]
          Length = 712

 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A     A     V +++               +  
Sbjct: 5   VMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVAEVVSQ-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  AQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 101


>gi|270292547|ref|ZP_06198758.1| ATP cone domain-containing protein [Streptococcus sp. M143]
 gi|270278526|gb|EFA24372.1| ATP cone domain-containing protein [Streptococcus sp. M143]
          Length = 112

 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVENRLLGAGYITIAEHYISYRLQRDLER 95



 Score = 38.3 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETAL 202
           ++++  +G +  F+  ++   V +A   +  +    +  L++  K +   L E+ +E A 
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTVYVLTDDLRQNLAQVTKKVVLDLEEAKVERAT 60

Query: 203 IFSSRTLIEKE---PNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
           I   ++++E       Y  +   ++  +L+R++  + Y        H
Sbjct: 61  ISMIQSMVENRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLH 107


>gi|329577341|gb|EGG58799.1| anaerobic ribonucleoside-triphosphate reductase [Enterococcus
           faecalis TX1467]
          Length = 727

 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++V+KR+G + +FD  KI  A++KA    +      +      ++++       + +
Sbjct: 14  LSTIKVVKRDGRLVTFDDQKIYDALIKA---EQKIHDQVTPLTHQKVQSIVADVNREIAE 70

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
              +   V I +IQ+ VE +L+ +  + +  EY+ YR +R   R+  +   
Sbjct: 71  RFTNN--VKIYEIQNIVEHTLLSNNEYALAEEYIHYRTQRDFERSKATDIN 119


>gi|125719012|ref|YP_001036145.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           sanguinis SK36]
 gi|125498929|gb|ABN45595.1| Ribonucleotide reductase, class III, anaerobic, putative
           [Streptococcus sanguinis SK36]
          Length = 731

 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD SKI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 9   ETAPAIYVEKRDGRRVTFDVSKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 64

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 65  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|317496440|ref|ZP_07954792.1| anaerobic ribonucleoside-triphosphate reductase [Gemella moribillum
           M424]
 gi|316913455|gb|EFV34949.1| anaerobic ribonucleoside-triphosphate reductase [Gemella moribillum
           M424]
          Length = 727

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 13/136 (9%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
            K + VIKR+G V  FD  KI +AI KA  +V G+  S +      I ++ +  +  +  
Sbjct: 18  TKNLLVIKRDGRVVKFDADKIYKAIEKAVKSVFGEKHSVN------IDSIVDNVIIEIGN 71

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145
             K    + I ++Q+ VE +L+  G   I  EYV YR  R   R                
Sbjct: 72  RFKDN--IKIYELQNIVEHTLLTLGEEAIYEEYVGYRSMRDIERERSLDINVAIE----- 124

Query: 146 KIMMDDGTLISFNSKR 161
           K++  D  +++ N+ +
Sbjct: 125 KLVNRDENVVNENANK 140



 Score = 43.7 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL----QDVSSKIVLSETYKNM----YDGLSES 196
           L ++  DG ++ F++ ++   +E+A   +      V+   ++      +     D +   
Sbjct: 21  LLVIKRDGRVVKFDADKIYKAIEKAVKSVFGEKHSVNIDSIVDNVIIEIGNRFKDNIKIY 80

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
           +L+  +  +  TL E+      V  R  +  + RE    +    +K  + +   +     
Sbjct: 81  ELQNIVEHTLLTLGEEAIYEEYVGYR-SMRDIERERSLDINVAIEKLVNRDENVVNENAN 139

Query: 257 CR 258
             
Sbjct: 140 KD 141


>gi|125718012|ref|YP_001035145.1| hypothetical protein SSA_1190 [Streptococcus sanguinis SK36]
 gi|125497929|gb|ABN44595.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36]
          Length = 112

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVESRLLGAGYITIAEHYISYRLQRDLER 95


>gi|261210268|ref|ZP_05924564.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC341]
 gi|260840612|gb|EEX67168.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio sp. RC341]
          Length = 706

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A  A               I          +    +  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA--AEHADQD---------IAIYALNVALAVELKLRDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVHIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTREIE 103



 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  Y+ +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQDIAIYALNVALAVELKLRDYEEVHIAEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL RE+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTREIEGLIQESNADLLNEN 117


>gi|294634537|ref|ZP_06713072.1| anaerobic ribonucleoside-triphosphate reductase [Edwardsiella tarda
           ATCC 23685]
 gi|291092051|gb|EFE24612.1| anaerobic ribonucleoside-triphosphate reductase [Edwardsiella tarda
           ATCC 23685]
          Length = 724

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+++A         +  +   D    +      ++    +  
Sbjct: 17  VIKRDGCQVPFNEQRIKEAVLRA-------SQAAGVDDADYCATVARVVAMQMADRER-- 67

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 68  --VDINEIQNAVENQLMAGDYKQLARAYIEYRHDRDVAREQRGRLNQD 113


>gi|291541491|emb|CBL14601.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus
           bromii L2-63]
          Length = 723

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IKRNG    F+  KI  A+ KA                + I+++ +       + NK
Sbjct: 1   MRIIKRNGSEEDFNIEKIINAVKKA-----NGSGEHKFLTDEQIEDVADYVE---YKCNK 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKIT 115
               V +E+IQD VE  LM  G  ++ 
Sbjct: 53  IRRAVSVEEIQDMVEDQLMAKGAFELA 79


>gi|15900138|ref|NP_344742.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae TIGR4]
 gi|14971670|gb|AAK74382.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae TIGR4]
          Length = 735

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKCLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKCLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|37528320|ref|NP_931665.1| anaerobic ribonucleoside triphosphate reductase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787758|emb|CAE16871.1| Anaerobic ribonucleoside-triphosphate reductase [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 712

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A+ +A  AV        I           Q  + + Q     
Sbjct: 5   VIKRDGRQVPFDETRIRDAVKRATSAVGMTDDEYCI-----------QVASAVTQSMADY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V ++DIQ+ VE  L+ + H  +   Y+ YR +R  VR   S    +        +   
Sbjct: 54  RQVDVQDIQNAVEHQLIANKHDHLVHRYIQYRHDRDTVRELHSRLNQEIRGL----VEQS 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NVSLLNENANKDSKVIPTQRDLLAGIVAKNYAKQ 143


>gi|149001693|ref|ZP_01826666.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
 gi|147760151|gb|EDK67140.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae SP14-BS69]
          Length = 185

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVIDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.0 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVIDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|330016521|ref|ZP_08308476.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp. MS
           92-3]
 gi|328528692|gb|EGF55652.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella sp. MS
           92-3]
          Length = 707

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F+  +I  AI++A  A     A     V +++               +   
Sbjct: 1   MKRDGCKVPFNSERIQEAILRAAKAAGVDDADYCATVAEVVSQ-----------QMQGRA 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 96


>gi|295098395|emb|CBK87485.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 712

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++ + ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMHERSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NSSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|111658806|ref|ZP_01409437.1| hypothetical protein SpneT_02000104 [Streptococcus pneumoniae
           TIGR4]
          Length = 737

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI +A+ KA      K    +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKCLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  + +A   + DV+           + +++
Sbjct: 5   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKCLNDLTERIIT 64

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 65  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|283786925|ref|YP_003366790.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           rodentium ICC168]
 gi|282950379|emb|CBG90027.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           rodentium ICC168]
          Length = 712

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++ + ++  
Sbjct: 5   VMKRDGCKVPFKSERIQEAILRA-------AKAAGVDDADYCATVAEVVSSQMNERSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|323126203|gb|ADX30668.1| gp50 [Mycobacterium phage Wonder]
          Length = 670

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 84/488 (17%), Positives = 148/488 (30%), Gaps = 128/488 (26%)

Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476
            +G+    I  + + +  A  V  GG R+ A  A +      ++ F+ ++  TG      
Sbjct: 237 HDGERLDGISAMGIDHAIAQCVVAGGVRRSARMAMMHWNDPQIDRFVGIKAATGS----H 292

Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
              N +  +   F   V    G                                      
Sbjct: 293 WTTNISVEVDQDFWDAVKVGGG-------------------------------------- 314

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
               +A  + RK+   +   G P   +    N+  P      V  +N C EITL      
Sbjct: 315 ----NAEYILRKITEGMVANGEPG-FWDSLSNVGEPN----EVVCTNPCGEITLEP---- 361

Query: 597 TAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654
              CNLG +NL A    +    DY  L    R   R L      +     K+++    +R
Sbjct: 362 WEPCNLGHVNLAAFVREDTNKVDYLGLYKAHRLITRFL-IRATFSEVADPKSREVLDRNR 420

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714
            IG+G +G  S L +    Y S        + +  ++     A+ E A +          
Sbjct: 421 RIGVGHLGVASFLAMTGKRY-SEAPASPFRDVLRHLAHEVDKAAEEFAHQLR-------- 471

Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774
                      I +  + R                                +APT TIA 
Sbjct: 472 -----------IPVPVKKR-------------------------------TVAPTGTIAK 489

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834
           + GVS+ I P +   +++       ++ +      L         +  DL      + +I
Sbjct: 490 MPGVSEGIHPIFSRYFIRRVR---LSMSDPEQTRMLADYGRQGYEVEDDLYAKFTGVVSI 546

Query: 835 ER----IPDDLKKIHATAFEI----DPMWLIESASRRQK-----WIDQAQSLNLYL--DE 879
                 + + +K+    A ++    D + L E  +  Q      W D A S    +  D+
Sbjct: 547 PTQDTLVAEVVKRYGRDAEDLVESADQLTLNEMLA-FQAMYQMIWADNAVSFTANVDPDK 605

Query: 880 PSGKKLDF 887
            +   +  
Sbjct: 606 YNADDVRQ 613


>gi|261885165|ref|ZP_06009204.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 74

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 28/95 (29%)

Query: 862 RRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919
            RQKWIDQ QSLN+++  D+ SG+ L  IY  AW +G+K+TYYLRS S            
Sbjct: 6   VRQKWIDQGQSLNIFMRLDKASGRYLSEIYTLAWELGVKSTYYLRSES----------PD 55

Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
              L+  P+                    ECE CQ
Sbjct: 56  SSHLDNKPMDRSV----------------ECEGCQ 74


>gi|332365428|gb|EGJ43189.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis SK355]
          Length = 732

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E    + V KR+G   +FD +KI +A+++A   V       +  ++  ++ +T++ V  +
Sbjct: 10  ETAPAIYVEKRDGRRVAFDVAKIYKAMVRAAQEV----GPLNPMLEAKLEAITDRIVAEI 65

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 A  V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 66  SSRF--AKYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 116


>gi|306829697|ref|ZP_07462886.1| ATP cone domain protein [Streptococcus mitis ATCC 6249]
 gi|304428048|gb|EFM31139.1| ATP cone domain protein [Streptococcus mitis ATCC 6249]
          Length = 112

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLDEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVENRLLGAGYITIAEHYISYRLQRDLER 95



 Score = 38.7 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV------SSKIVLSETYKNMYDGLSESDL 198
           ++++  +G +  F+  ++   V +A   +  +      +   V  +   ++ D       
Sbjct: 1   MQVIKRNGEVADFDPDKIYQAVLKAAQTVYVLTDDLRQNLAQVTKKVVLDL-DEAKVERA 59

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246
             ++I S          Y  +   ++  +L+R++  + Y        H
Sbjct: 60  TISMIQSMVENRLLGAGYITIAEHYISYRLQRDLERSGYGDHIAVHLH 107


>gi|331268374|ref|YP_004394866.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
 gi|329124924|gb|AEB74869.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum BKT015925]
          Length = 700

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHNKSA 90
           +KR+G    FD  KI+ AI        G     +  +++     +T++ + +L   N   
Sbjct: 2   VKRDGRRVPFDSIKITNAIK-------GSADEIAFNLKESEAIEITQKVIEQLEDKNCDE 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + +E+IQ+ VE  L  +G   I + Y  YR ER+ +R  +SH          + ++  
Sbjct: 55  --ISVEEIQNIVESVLQANGCEVIWKTYSNYRRERTKIREKKSHL---------MTVIQK 103

Query: 151 DGTLISFN 158
            G     +
Sbjct: 104 IGVETDRD 111



 Score = 41.8 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 148 MMDDGTLISFNSKRLEMIVE----EACSGLQDVSSKIVLSETYKNM----YDGLSESDLE 199
           +  DG  + F+S ++   ++    E    L++  +  +  +  + +     D +S  +++
Sbjct: 2   VKRDGRRVPFDSIKITNAIKGSADEIAFNLKESEAIEITQKVIEQLEDKNCDEISVEEIQ 61

Query: 200 TAL 202
             +
Sbjct: 62  NIV 64


>gi|154175399|ref|YP_001407350.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           curvus 525.92]
 gi|112802436|gb|EAT99780.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           curvus 525.92]
          Length = 701

 Score = 80.3 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 13/102 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G    F   KI  AI KAF +                + +    V  + Q +  
Sbjct: 3   EILKRDGTRQEFVAYKIVDAIKKAFESENTPYD----------EKIFTNVVQDIFQKS-- 50

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
              + +EDIQD +E  L +  +  I + ++LYR      R  
Sbjct: 51  -GAITVEDIQDAIEKELFEGHYFNILKSFMLYRHTHKLQREQ 91


>gi|322391193|ref|ZP_08064665.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus peroris ATCC 700780]
 gi|321145946|gb|EFX41335.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus peroris ATCC 700780]
          Length = 733

 Score = 80.3 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA   V         R+  +++ + ++  +R  Q     
Sbjct: 16  VEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSALVERIVDEIHSRFPQG---- 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 72  --VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.0 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +  A  AP L +   DG  + F+  +++  + +A   + DV+           + ++ E
Sbjct: 4   LEEKAVPAPTLFVEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSALVERIVDE 63

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 64  IHSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|322804365|emb|CBZ01915.1| ribonucleotide reductase of class III (anaerobic), large subunit
           [Clostridium botulinum H04402 065]
          Length = 713

 Score = 80.3 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G     D  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEIDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 41.8 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  +  +  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEIDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|306825992|ref|ZP_07459328.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431708|gb|EFM34688.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 737

 Score = 80.3 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ VT +       
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----AEKVMDVTPLVEKRLNGLVERIVTEIHSRFPKG 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 74  --VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.4 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +      P L +   DG  + F+  +++  + +A   + DV+           + +++E
Sbjct: 6   LEEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTE 65

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 66  IHSRFPKGVKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|226947317|ref|YP_002802408.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842007|gb|ACO84673.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 713

 Score = 80.3 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN--LTEQTVTRLLQHNK 88
           V+KR+G     D  KIS AI  A        A          +N  LT++ + ++   NK
Sbjct: 4   VVKRDGRKVEIDVVKISNAIKGA--------AEEIAFDMKESENISLTQKVIKKIEDSNK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               + +EDIQ+ VE  L+ SG  +I   Y  YR ER+ +R  +S   +   
Sbjct: 56  EE--ISVEDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIE 105



 Score = 41.8 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 15/134 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACS----GLQDVSSKIVLSETYKNMYD----GLSE 195
            L ++  DG  +  +  ++   ++ A       +++  +  +  +  K + D     +S 
Sbjct: 1   MLYVVKRDGRKVEIDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV 60

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            D++  +         KE  YA           RRE       K +  T  E   +  + 
Sbjct: 61  EDIQNLVEHVLIDSGFKEIGYAY-------SNYRRERTKIREIKSELMTAIEKIGVETDR 113

Query: 256 FCRYIEEGVKARLL 269
               +     ++LL
Sbjct: 114 DNANVGNNFSSKLL 127


>gi|323343205|ref|ZP_08083436.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463269|gb|EFY08464.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 783

 Score = 80.3 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 9/141 (6%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E ++ + ++KR+     F+  KI+ AI K F ++E    S      D   ++  + + ++
Sbjct: 5   EHLEKITILKRDNQKMKFNGEKIAIAIKKGFDSLESNKYS-----NDDANHVYMEVLKQI 59

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA----AQSHSKSDA 139
            +       + IE IQD +E  L++  +  +   +  YR  R++ R      Q       
Sbjct: 60  EEIATHEDYISIEHIQDLIERELLRQNYTDVYESFSQYRNRRNESRKIFISKQHKFLKAI 119

Query: 140 PIAPKLKIMMDDGTLISFNSK 160
               + + + +D    + N  
Sbjct: 120 EKLNQKEAVEEDSKRENANVD 140



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 56/143 (39%), Gaps = 18/143 (12%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-----DVSSKIVLSETYKNMYDGLSESD 197
            K+ I+  D   + FN +++ + +++    L+     +  +  V  E  K + + ++  +
Sbjct: 8   EKITILKRDNQKMKFNGEKIAIAIKKGFDSLESNKYSNDDANHVYMEVLKQI-EEIATHE 66

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK-KPQKATHHEMQCLYPEYF 256
            +   I   + LIE+E          LL +   +V  +  + + ++    ++       F
Sbjct: 67  -DYISIEHIQDLIERE----------LLRQNYTDVYESFSQYRNRRNESRKIFISKQHKF 115

Query: 257 CRYIEEGVKARLLHESMMDFDLV 279
            + IE+  +   + E     +  
Sbjct: 116 LKAIEKLNQKEAVEEDSKRENAN 138


>gi|62182877|ref|YP_219294.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62130510|gb|AAX68213.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322717379|gb|EFZ08950.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATIAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|238918443|ref|YP_002931957.1| anaerobic ribonucleoside triphosphate reductase [Edwardsiella
           ictaluri 93-146]
 gi|238868011|gb|ACR67722.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+++A  A +   A     V  ++                  
Sbjct: 5   VIKRDGCQVPFNEQRIKEAVLRAAQAADVNDADYCATVARVVAM-----------QMADR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 54  ERVDINDIQHAVENQLMAGNYKQLARAYIEYRHDRDVAREQRGRLNQD 101


>gi|313636849|gb|EFS02470.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria
           seeligeri FSL S4-171]
          Length = 100

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 835 ERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
             +       +   A+++D    +    RRQ+ +DQ+ S N Y+       KL  ++  A
Sbjct: 15  PDLNLSTYPYYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 74

Query: 893 WLMGLKTTYYLRSR 906
           W  GLKTTYY+RS 
Sbjct: 75  WNEGLKTTYYVRSN 88


>gi|307129134|ref|YP_003881150.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           3937]
 gi|306526663|gb|ADM96593.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           3937]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA         +  +   D    +         Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKA-------AKAAGVDDADYCATVAGAV----AQQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  TRVDIREIQNVVENLLMSGKYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|213419210|ref|ZP_03352276.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 605

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|195978076|ref|YP_002123320.1| anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|225868594|ref|YP_002744542.1| ATP-binding protein [Streptococcus equi subsp. zooepidemicus]
 gi|225870449|ref|YP_002746396.1| ATP-binding protein [Streptococcus equi subsp. equi 4047]
 gi|195974781|gb|ACG62307.1| anaerobic ribonucleoside triphosphate reductase NrdD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|225699853|emb|CAW93719.1| ATP-binding protein [Streptococcus equi subsp. equi 4047]
 gi|225701870|emb|CAW99344.1| ATP-binding protein [Streptococcus equi subsp. zooepidemicus]
          Length = 112

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +A++KA   V       S R    +  +T++ V  L +   
Sbjct: 1   MQIIKRDGQLADFDPDKIYQALIKAARTVY--VIDDSWRQH--LAQVTKKVVIDLEEVQA 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ER--PTINMIQSLVENRLIDAGYMTIAEHYIAYRLQRDLER 95



 Score = 37.9 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK------IVLSETYKNMYDGLSESDL 198
           ++I+  DG L  F+  ++   + +A   +  +          V  +   ++ + +     
Sbjct: 1   MQIIKRDGQLADFDPDKIYQALIKAARTVYVIDDSWRQHLAQVTKKVVIDL-EEVQAERP 59

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232
              +I S       +  Y  +   ++  +L+R++
Sbjct: 60  TINMIQSLVENRLIDAGYMTIAEHYIAYRLQRDL 93


>gi|25011136|ref|NP_735531.1| hypothetical protein gbs1085 [Streptococcus agalactiae NEM316]
 gi|76798073|ref|ZP_00780329.1| anaerobic ribonucleotide reductase [Streptococcus agalactiae
           18RS21]
 gi|23095535|emb|CAD46744.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586578|gb|EAO63080.1| anaerobic ribonucleotide reductase [Streptococcus agalactiae
           18RS21]
 gi|319745053|gb|EFV97380.1| ribonucleoside-diphosphate reductase [Streptococcus agalactiae ATCC
           13813]
          Length = 112

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G +  FDP KI +AI+KA   V     S    ++  +  +T++ +  L     
Sbjct: 1   MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVLDES----LRQDLAQVTKKVILDLEDAQV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  IQ  VE  L+ +G+      Y+ YR +R   R
Sbjct: 57  ER--PTINMIQSLVENRLLDAGYIHTAEHYISYRLQRDLER 95


>gi|56416224|ref|YP_153299.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197365147|ref|YP_002144784.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56130481|gb|AAV79987.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197096624|emb|CAR62238.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|16763252|ref|NP_458869.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29144731|ref|NP_808073.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213053330|ref|ZP_03346208.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213427660|ref|ZP_03360410.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213612406|ref|ZP_03370232.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213645913|ref|ZP_03375966.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213855089|ref|ZP_03383329.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289827022|ref|ZP_06545838.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25285854|pir||AC1058 ribonucleoside-triphosphate reductase (EC 1.17.4.2) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505560|emb|CAD06912.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29140370|gb|AAO71933.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|16767698|ref|NP_463313.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167991234|ref|ZP_02572333.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168232785|ref|ZP_02657843.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168244067|ref|ZP_02668999.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168262510|ref|ZP_02684483.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464674|ref|ZP_02698577.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168821129|ref|ZP_02833129.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194451821|ref|YP_002048475.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471484|ref|ZP_03077468.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197264126|ref|ZP_03164200.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198244214|ref|YP_002218315.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388147|ref|ZP_03214759.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927049|ref|ZP_03218251.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205355187|ref|YP_002228988.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859579|ref|YP_002246230.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|18203220|sp|Q9L646|NRDD_SALTY RecName: Full=Anaerobic ribonucleoside-triphosphate reductase
 gi|7331271|gb|AAF60351.1|AF242390_1 anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium]
 gi|16423016|gb|AAL23272.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194410125|gb|ACF70344.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457848|gb|EDX46687.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195632571|gb|EDX51025.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197242381|gb|EDY25001.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197938730|gb|ACH76063.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199605245|gb|EDZ03790.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323714|gb|EDZ08909.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205274968|emb|CAR40039.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330264|gb|EDZ17028.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332912|gb|EDZ19676.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337077|gb|EDZ23841.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342347|gb|EDZ29111.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348967|gb|EDZ35598.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711382|emb|CAR35760.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|267996792|gb|ACY91677.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301160937|emb|CBW20470.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312915548|dbj|BAJ39522.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320088879|emb|CBY98637.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321222579|gb|EFX47651.1| Ribonucleotide reductase of class III anaerobic, large subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332991262|gb|AEF10245.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|261249540|emb|CBG27406.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|153801436|ref|ZP_01956022.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-3]
 gi|124123011|gb|EAY41754.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio cholerae
           MZO-3]
          Length = 706

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +      I          +       
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEHADQEIAIYALNVALAVELKLCDY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  DEVHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 103



 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A         + +  V       +  YD +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEHADQEIAIYALNVALAVELKLCDYDEVHITEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIEGLIQESNADLLNEN 117


>gi|262045318|ref|ZP_06018343.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037374|gb|EEW38620.1| anaerobic ribonucleoside-triphosphate reductase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 707

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F+  +I  AI++A  A     A     V +++               +   
Sbjct: 1   MKRDGCKVPFNLERIQEAILRAAKAAGVDDADYCATVAEVVSQ-----------QMQGRA 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDSQREKRGRLNQE 96


>gi|306828775|ref|ZP_07461967.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus mitis ATCC 6249]
 gi|304428953|gb|EFM32041.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus mitis ATCC 6249]
          Length = 737

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ VT +       
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----AEKVMDLTPLVEKRLNGLVERIVTEIHSRFPQG 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 74  --VKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 44.5 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +      P L +   DG  + F+  +++  + +A   + D++           + +++E
Sbjct: 6   LEEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDLTPLVEKRLNGLVERIVTE 65

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 66  IHSRFPQGVKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|161617740|ref|YP_001591705.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551298|ref|ZP_02345053.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442441|ref|YP_002043690.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197250742|ref|YP_002149369.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|238910608|ref|ZP_04654445.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|161367104|gb|ABX70872.1| hypothetical protein SPAB_05603 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401104|gb|ACF61326.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197214445|gb|ACH51842.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205323917|gb|EDZ11756.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|313646436|gb|EFS10898.1| anaerobic ribonucleoside-triphosphate reductase [Shigella flexneri
           2a str. 2457T]
          Length = 708

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 2   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVNE-----------QMQGRN 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 51  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 106

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 107 ASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 139


>gi|224586276|ref|YP_002640075.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224470804|gb|ACN48634.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|323132788|gb|ADX20218.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326626121|gb|EGE32466.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326630345|gb|EGE36688.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 714

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 7   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 58  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 103


>gi|289167678|ref|YP_003445947.1| hypothetical protein smi_0831 [Streptococcus mitis B6]
 gi|307708979|ref|ZP_07645439.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
 gi|288907245|emb|CBJ22080.1| conserved hypothetical protein [Streptococcus mitis B6]
 gi|307620315|gb|EFN99431.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK564]
          Length = 112

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSLVEHRLLGAGYITIAEHYISYRLQRDLER 95


>gi|300928061|ref|ZP_07143611.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 187-1]
 gi|300463908|gb|EFK27401.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 187-1]
          Length = 707

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQDRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 ASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|251791307|ref|YP_003006028.1| anaerobic ribonucleoside triphosphate reductase [Dickeya zeae
           Ech1591]
 gi|247539928|gb|ACT08549.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya zeae
           Ech1591]
          Length = 712

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA         + ++   D    +         Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKA-------AKAANVDDADYCATVAGAV----AQQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  ARVDIREIQNAVENLLMSGKYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|322615614|gb|EFY12534.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618674|gb|EFY15563.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322621913|gb|EFY18763.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627637|gb|EFY24428.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630944|gb|EFY27708.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637837|gb|EFY34538.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642296|gb|EFY38902.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643930|gb|EFY40478.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650994|gb|EFY47379.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656754|gb|EFY53042.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659823|gb|EFY56066.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322661966|gb|EFY58182.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666285|gb|EFY62463.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672705|gb|EFY68816.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676135|gb|EFY72206.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680619|gb|EFY76657.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684487|gb|EFY80491.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192802|gb|EFZ78028.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197321|gb|EFZ82461.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201561|gb|EFZ86625.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206075|gb|EFZ91037.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213084|gb|EFZ97886.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323215457|gb|EGA00201.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219442|gb|EGA03927.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227745|gb|EGA11899.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228915|gb|EGA13044.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236473|gb|EGA20549.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323240025|gb|EGA24072.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241927|gb|EGA25956.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247924|gb|EGA31861.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251438|gb|EGA35309.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258196|gb|EGA41873.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263658|gb|EGA47179.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265746|gb|EGA49242.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270190|gb|EGA53638.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 712

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|260913068|ref|ZP_05919550.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632655|gb|EEX50824.1| anaerobic ribonucleoside-triphosphate reductase [Pasteurella
           dagmatis ATCC 43325]
          Length = 708

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+  +I  A+ KA  AV             I + ++++  T         
Sbjct: 6   VIKRDGSRASFEVQRIINAVKKAAEAVNIDNEHY---CHTIGQRVSDEIFTGYQNE---- 58

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + I  IQ  VE  LM   + +I R Y+ YR +R   R  +S    +  
Sbjct: 59  --IDISHIQKIVENQLMSGQYPEIARAYIEYRHDRDLAREKRSQLTKEIE 106


>gi|195546290|ref|YP_002117548.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           plantarum]
 gi|195537749|dbj|BAG67046.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           plantarum]
          Length = 807

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRN  +  F    I+ A+ KAF  V         ++  I+  LT   + +LL+ NK  
Sbjct: 67  VIKRNKSIAKFHRENITNAVTKAFEDVYSNIEDHITKIDQIVD-LT---INKLLRQNKMQ 122

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
               I +IQ  VE SL+     K+   Y  YR +    R  Q+            K++  
Sbjct: 123 --FDITEIQSAVEQSLVDVEEFKVAEAYTAYRLQHDIDRKKQTSVDYQIN-----KLLKK 175

Query: 151 DGTLISFNSKR 161
           D  +++ N+ +
Sbjct: 176 DDDVVNENANK 186


>gi|307706340|ref|ZP_07643152.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|307708487|ref|ZP_07644952.1| ATP cone domain protein [Streptococcus mitis NCTC 12261]
 gi|322376343|ref|ZP_08050836.1| ATP cone domain protein [Streptococcus sp. M334]
 gi|307615403|gb|EFN94611.1| ATP cone domain protein [Streptococcus mitis NCTC 12261]
 gi|307618258|gb|EFN97413.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK321]
 gi|321282150|gb|EFX59157.1| ATP cone domain protein [Streptococcus sp. M334]
          Length = 112

 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSLVEHRLLGAGYITIAEHYISYRLQRDLER 95


>gi|187935520|ref|YP_001884381.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723673|gb|ACD24894.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 701

 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KIS+AI  A  A+E     R  +V + I+ +         +     
Sbjct: 4   VVKRDGRTVEFNGEKISQAIKGA--ALEIGVTLRESQVLETIQKVIMYIEDTKKEK---- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + +E IQ+ VE +L +     I   Y  YR ER+ VR  +S       
Sbjct: 58  --ITVEAIQNLVEKAL-REEDKNIAFAYSSYRRERTRVRDIKSDLMKAIE 104


>gi|300922868|ref|ZP_07138951.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 182-1]
 gi|300935905|ref|ZP_07150861.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 21-1]
 gi|300950236|ref|ZP_07164175.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 116-1]
 gi|300957147|ref|ZP_07169386.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 175-1]
 gi|301329263|ref|ZP_07222240.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 78-1]
 gi|300316091|gb|EFJ65875.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 175-1]
 gi|300420817|gb|EFK04128.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 182-1]
 gi|300450426|gb|EFK14046.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 116-1]
 gi|300458924|gb|EFK22417.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 21-1]
 gi|300844423|gb|EFK72183.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 78-1]
          Length = 707

 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 ASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|301646694|ref|ZP_07246557.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 146-1]
 gi|309792876|ref|ZP_07687304.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 145-7]
 gi|301075102|gb|EFK89908.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 146-1]
 gi|308123162|gb|EFO60424.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 145-7]
          Length = 707

 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 ASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|300821341|ref|ZP_07101489.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 119-7]
 gi|300899378|ref|ZP_07117636.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 198-1]
 gi|300906083|ref|ZP_07123803.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 84-1]
 gi|301304713|ref|ZP_07210821.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 124-1]
 gi|300357023|gb|EFJ72893.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 198-1]
 gi|300402091|gb|EFJ85629.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 84-1]
 gi|300526230|gb|EFK47299.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 119-7]
 gi|300840063|gb|EFK67823.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 124-1]
 gi|315255593|gb|EFU35561.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 85-1]
 gi|324019287|gb|EGB88506.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 117-3]
          Length = 707

 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 ASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|296101023|ref|YP_003611169.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055482|gb|ADF60220.1| anaerobic ribonucleoside triphosphate reductase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 712

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A     A     V D++            +     
Sbjct: 5   VMKRDGCKVPFKSERIQEAILRAAKAAGVDDADYCATVADVVS-----------RQMNER 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  SQVDISEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQE 101


>gi|157147776|ref|YP_001455095.1| anaerobic ribonucleoside triphosphate reductase [Citrobacter koseri
           ATCC BAA-895]
 gi|157084981|gb|ABV14659.1| hypothetical protein CKO_03580 [Citrobacter koseri ATCC BAA-895]
          Length = 707

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A         +  +   D    + E    ++ + ++   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSNQMNERSQ--- 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 51  -VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 96


>gi|309784144|ref|ZP_07678784.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1617]
 gi|308928007|gb|EFP73474.1| anaerobic ribonucleoside-triphosphate reductase [Shigella
           dysenteriae 1617]
          Length = 707

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 ASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|300916607|ref|ZP_07133328.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 115-1]
 gi|300416091|gb|EFJ99401.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 115-1]
          Length = 707

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 SSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|288803351|ref|ZP_06408784.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica D18]
 gi|288334171|gb|EFC72613.1| anaerobic ribonucleoside-triphosphate reductase [Prevotella
           melaninogenica D18]
          Length = 696

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 14/89 (15%)

Query: 48  RAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLM 107
            AI+KAF +V       ++           + +  L   N     + +EDIQ+QVE +LM
Sbjct: 2   NAILKAFESVNEPTDLGTLS----------KIIANLNIQND----IKVEDIQNQVELALM 47

Query: 108 QSGHHKITREYVLYREERSDVRAAQSHSK 136
           + G++++ + +++YR++ ++ R      K
Sbjct: 48  KEGYYQVAKSFIVYRQQHTEDRETLEKMK 76


>gi|297600071|ref|NP_001048435.2| Os02g0804900 [Oryza sativa Japonica Group]
 gi|255671328|dbj|BAF10349.2| Os02g0804900 [Oryza sativa Japonica Group]
          Length = 78

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895
            T +EI    +++ A  R  +IDQ+QSLN+++D+P+  KL  ++  AW  
Sbjct: 2   RTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSK 51


>gi|227886709|ref|ZP_04004514.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           83972]
 gi|300987086|ref|ZP_07177993.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 45-1]
 gi|300988327|ref|ZP_07178623.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 200-1]
 gi|301048558|ref|ZP_07195575.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 185-1]
 gi|227836282|gb|EEJ46748.1| anaerobic ribonucleoside triphosphate reductase [Escherichia coli
           83972]
 gi|300299602|gb|EFJ55987.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 185-1]
 gi|300305945|gb|EFJ60465.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 200-1]
 gi|300407781|gb|EFJ91319.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 45-1]
 gi|315288409|gb|EFU47807.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 110-3]
 gi|315293597|gb|EFU52949.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 153-1]
 gi|315299003|gb|EFU58257.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 16-3]
 gi|324005185|gb|EGB74404.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 57-2]
 gi|324013749|gb|EGB82968.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 60-1]
          Length = 707

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 SSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|300818539|ref|ZP_07098748.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 107-1]
 gi|300528943|gb|EFK50005.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 107-1]
          Length = 707

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 SSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|301024457|ref|ZP_07188137.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 69-1]
 gi|300396589|gb|EFJ80127.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli
           MS 69-1]
          Length = 707

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A  A E   A     V  ++               +   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGRN 49

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 50  QVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 SSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|325694491|gb|EGD36400.1| ATP cone domain protein [Streptococcus sanguinis SK150]
          Length = 112

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G V  FDP KI +A++KA   V          ++  +  +T++    L +   
Sbjct: 1   MQVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVALDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVESRLLGAGYITIAEHYISYRLQRDLER 95


>gi|322386564|ref|ZP_08060191.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus cristatus ATCC 51100]
 gi|321269483|gb|EFX52416.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus cristatus ATCC 51100]
          Length = 731

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G   +FD +KI +A+++A           +  ++  ++ +T++ V  +      A
Sbjct: 16  VEKRDGRRVAFDVTKIYKAMVRA----AQDLGPMTPMLEAKLETITDRVVAEISSRF--A 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+ +  + I   Y+ YR +R   R+  +   
Sbjct: 70  KYVKIYEIQNIVEHELLNAKEYAIAENYITYRTQRDFERSKATDIN 115


>gi|304314792|ref|YP_003849939.1| ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588251|gb|ADL58626.1| predicted ribonucleoside-diphosphate reductase, large subunit
           [Methanothermobacter marburgensis str. Marburg]
          Length = 144

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLL 346
                 L++L +RY L    G  +E P+  F RVA  +A  +      + E    FY+++
Sbjct: 4   NLTKTALKVLEERYLLKNERGEVVETPEEMFRRVARAVASADEMYGFDSYETEELFYSVM 63

Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404
            +  F+ ++PTL N+GT   QLS+CF+  V D +  IF +L+  A++ K  G L + +
Sbjct: 64  RNLEFLPNSPTLMNAGTPINQLSACFVLPVDDSIESIFESLRNMAIIHKSGGALDSHF 121


>gi|313669387|ref|YP_004049814.1| anaerobic ribonucleoside-triphosphate reductase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156584|gb|ADR35261.1| anaerobic ribonucleoside-triphosphate reductase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 704

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    + P KI  AI KA+ +V+               ++ E  +T +L     
Sbjct: 6   RVIKRDGSSELYHPFKIEDAIRKAYESVQ--------------VSVNEDVITEILFQVMY 51

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             +  +E IQD +E  L +SG   + + ++ YR      R 
Sbjct: 52  HSVFEVEKIQDLIEEELYKSGAFSVMKSFITYRFLHKMQRE 92


>gi|282598656|ref|YP_003358753.1| gp50 [Mycobacterium phage Peaches]
 gi|255928183|gb|ACU41801.1| gp50 [Mycobacterium phage Peaches]
          Length = 677

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 155/475 (32%), Gaps = 113/475 (23%)

Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473
           I    G   G+   +++ +  A  V  GG R+ A  + +      +EEF+  ++ TG   
Sbjct: 238 IATVGGSLNGIAA-MEIDHAIAQCVVAGGVRRSARMSMMHWQDPQIEEFVRCKQETG--- 293

Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
            +    N +  + DLF   +      ++   D+                           
Sbjct: 294 -KHWTTNISVVVDDLFWTALNMPNQVSIMVRDQ--------------------------- 325

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593
                   A      +   +   G P   F D       + +   V  +N C EITL   
Sbjct: 326 --------AHKALTWITDGMVANGEPG--FWDSSLSSQGEPN--EVVCTNPCGEITL--- 370

Query: 594 SEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
            +E   CNLG INL A   +N + D   L  + R   R L      +     K+++    
Sbjct: 371 -QEWEPCNLGHINLAAFVKDNGKVDTIDLIRSHRLMARFL-IRATFSPVGDPKSREVLDR 428

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R IG+G +G  S L +    Y+                                     
Sbjct: 429 NRRIGVGHLGVASYLAMTGRRYS------------------------------------- 451

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772
                    P+D             + ++++    EL+  V            +APT TI
Sbjct: 452 -------KAPLDKHFRKTLRELAKEVEQSAQQFSHELRIPV------PVKTRTVAPTGTI 498

Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE-------AMISDLK 825
           A + GVS+ I P +   + +      F+  ++ L   L  +    E        ++  + 
Sbjct: 499 AKMPGVSEGIHPIFAKYFNRRIR---FSKGDAELEK-LIDQGYDFEPCQYAQNTVVVTIP 554

Query: 826 YHDGSIGN-IERIPDDLKKIHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLD 878
             D  +   ++R   D ++I  +A ++    L+   +  Q  W D A S    +D
Sbjct: 555 TKDTLVQEVVDRFGRDAEEIVESAEDLTLNQLLAFQAMYQMLWADNAVSFTANVD 609


>gi|15902732|ref|NP_358282.1| hypothetical protein spr0688 [Streptococcus pneumoniae R6]
 gi|111658331|ref|ZP_01409019.1| hypothetical protein SpneT_02000471 [Streptococcus pneumoniae
           TIGR4]
 gi|116515795|ref|YP_816174.1| hypothetical protein SPD_0680 [Streptococcus pneumoniae D39]
 gi|118090036|ref|YP_873928.1| ATP cone domain-containing protein [Streptococcus pneumoniae TIGR4]
 gi|148985870|ref|ZP_01818964.1| glutathione reductase [Streptococcus pneumoniae SP3-BS71]
 gi|148989862|ref|ZP_01821156.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992445|ref|ZP_01822140.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997142|ref|ZP_01824796.1| glutathione reductase [Streptococcus pneumoniae SP11-BS70]
 gi|149003402|ref|ZP_01828291.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007662|ref|ZP_01831279.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|149010592|ref|ZP_01831963.1| glutathione reductase [Streptococcus pneumoniae SP19-BS75]
 gi|149021646|ref|ZP_01835677.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484438|ref|ZP_02709390.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1873-00]
 gi|168486207|ref|ZP_02710715.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488449|ref|ZP_02712648.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae SP195]
 gi|168490869|ref|ZP_02715012.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC0288-04]
 gi|168492931|ref|ZP_02717074.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC3059-06]
 gi|168575441|ref|ZP_02721377.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae MLV-016]
 gi|169833820|ref|YP_001694239.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|182683698|ref|YP_001835445.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           CGSP14]
 gi|194397979|ref|YP_002037425.1| hypothetical protein SPG_0710 [Streptococcus pneumoniae G54]
 gi|221231573|ref|YP_002510725.1| ATP-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854287|ref|YP_002735799.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae JJA]
 gi|225856453|ref|YP_002737964.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae P1031]
 gi|225858587|ref|YP_002740097.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae 70585]
 gi|225861318|ref|YP_002742827.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649422|ref|ZP_04523674.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821920|ref|ZP_04597765.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230987|ref|ZP_06964668.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298254140|ref|ZP_06977726.1| ribonucleoside-triphosphate reductase [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|298503216|ref|YP_003725156.1| anaerobic ribonucleotide reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255807|ref|ZP_07341848.1| ATP-binding protein [Streptococcus pneumoniae BS455]
 gi|303260246|ref|ZP_07346217.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303261452|ref|ZP_07347400.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264120|ref|ZP_07350041.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS397]
 gi|303266269|ref|ZP_07352160.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS457]
 gi|303268708|ref|ZP_07354498.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS458]
 gi|307067384|ref|YP_003876350.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|307127671|ref|YP_003879702.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           670-6B]
 gi|15458277|gb|AAK99492.1| Hypothetical protein spr0688 [Streptococcus pneumoniae R6]
 gi|85720552|gb|ABC75778.1| ribonucleoside-diphosphate reductase, alpha subunit, truncation
           [Streptococcus pneumoniae TIGR4]
 gi|116076371|gb|ABJ54091.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|147756842|gb|EDK63882.1| glutathione reductase [Streptococcus pneumoniae SP11-BS70]
 gi|147758585|gb|EDK65583.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760817|gb|EDK67788.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|147765073|gb|EDK72002.1| glutathione reductase [Streptococcus pneumoniae SP19-BS75]
 gi|147922016|gb|EDK73140.1| glutathione reductase [Streptococcus pneumoniae SP3-BS71]
 gi|147924804|gb|EDK75888.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928762|gb|EDK79775.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930107|gb|EDK81093.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996322|gb|ACA36934.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172042325|gb|EDT50371.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1873-00]
 gi|182629032|gb|ACB89980.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           CGSP14]
 gi|183570715|gb|EDT91243.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183573047|gb|EDT93575.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae SP195]
 gi|183574590|gb|EDT95118.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183577037|gb|EDT97565.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183578590|gb|EDT99118.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae MLV-016]
 gi|194357646|gb|ACF56094.1| hypothetical protein SPG_0710 [Streptococcus pneumoniae G54]
 gi|220674033|emb|CAR68546.1| ATP-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225720177|gb|ACO16031.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae 70585]
 gi|225723761|gb|ACO19614.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae JJA]
 gi|225724472|gb|ACO20324.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae P1031]
 gi|225726538|gb|ACO22389.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238811|gb|ADI69942.1| anaerobic ribonucleotide reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793936|emb|CBW36332.1| ATP-binding protein [Streptococcus pneumoniae INV104]
 gi|301799793|emb|CBW32362.1| ATP-binding protein [Streptococcus pneumoniae OXC141]
 gi|301801624|emb|CBW34322.1| ATP-binding protein [Streptococcus pneumoniae INV200]
 gi|302597191|gb|EFL64296.1| ATP-binding protein [Streptococcus pneumoniae BS455]
 gi|302637586|gb|EFL68073.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638570|gb|EFL69034.1| ATP cone domain-containing protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641768|gb|EFL72125.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS458]
 gi|302644199|gb|EFL74455.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS457]
 gi|302646525|gb|EFL76751.1| ATP cone domain-containing protein [Streptococcus pneumoniae BS397]
 gi|306408921|gb|ADM84348.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pneumoniae AP200]
 gi|306484733|gb|ADM91602.1| ATP cone domain protein [Streptococcus pneumoniae 670-6B]
 gi|327390136|gb|EGE88479.1| ATP cone domain protein [Streptococcus pneumoniae GA04375]
 gi|332073096|gb|EGI83575.1| ATP cone domain protein [Streptococcus pneumoniae GA17570]
 gi|332076058|gb|EGI86524.1| ATP cone domain protein [Streptococcus pneumoniae GA41301]
 gi|332077193|gb|EGI87655.1| ATP cone domain protein [Streptococcus pneumoniae GA17545]
 gi|332202642|gb|EGJ16711.1| ATP cone domain protein [Streptococcus pneumoniae GA41317]
 gi|332203933|gb|EGJ18000.1| ATP cone domain protein [Streptococcus pneumoniae GA47368]
 gi|332204787|gb|EGJ18852.1| ATP cone domain protein [Streptococcus pneumoniae GA47901]
          Length = 112

 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLQEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVEHRLLGAGYITIAEHYISYRLQRDLER 95


>gi|21910387|ref|NP_664655.1| putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           MGAS315]
 gi|21904584|gb|AAM79458.1| putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           MGAS315]
          Length = 112

 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  + ++T++ V  L + + 
Sbjct: 1   MQIIKRDGHVADFDPDKIYQAIIKAARTVYVIDDTW----RQNLTHVTKKVVIDLEEAHV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  +Q  VE  LM +G+  I   Y+ YR +R   R
Sbjct: 57  ER--PTINMVQSLVENRLMDAGYITIAEHYISYRLQRDLER 95


>gi|114563613|ref|YP_751126.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           frigidimarina NCIMB 400]
 gi|114334906|gb|ABI72288.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 705

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G  T+FD  +I  A++ A         S  I      + L +    ++    +  
Sbjct: 4   VVKRDGCRTAFDGCRIKEAVVAAM-------ESAGIADHQYAQQLAQTVEQQMTVKTE-- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I ++QD VE  LM      + R Y+ YR +R   R  QS   
Sbjct: 55  --VDIHELQDAVENLLMSGPFKSVARHYIEYRHDRDKHRETQSKLN 98


>gi|293365648|ref|ZP_06612357.1| ATP cone domain protein [Streptococcus oralis ATCC 35037]
 gi|306825031|ref|ZP_07458374.1| ATP cone domain protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|307703596|ref|ZP_07640538.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|315613358|ref|ZP_07888267.1| ATP cone domain protein [Streptococcus sanguinis ATCC 49296]
 gi|322375430|ref|ZP_08049943.1| ATP cone domain protein [Streptococcus sp. C300]
 gi|331266169|ref|YP_004325799.1| conserved hypothetical protein,ribonucleotide-diphosphate
           reductase, ATP cone domain-containing protein, putative
           [Streptococcus oralis Uo5]
 gi|291316016|gb|EFE56460.1| ATP cone domain protein [Streptococcus oralis ATCC 35037]
 gi|304432858|gb|EFM35831.1| ATP cone domain protein [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|307623003|gb|EFO01998.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|315314593|gb|EFU62636.1| ATP cone domain protein [Streptococcus sanguinis ATCC 49296]
 gi|321279693|gb|EFX56733.1| ATP cone domain protein [Streptococcus sp. C300]
 gi|326682841|emb|CBZ00458.1| conserved hypothetical protein,ribonucleotide-diphosphate
           reductase, ATP cone domain-containing protein, putative
           [Streptococcus oralis Uo5]
          Length = 112

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG +  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEIAEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVEHRLLGAGYITIAEHYISYRLQRDLER 95


>gi|319939165|ref|ZP_08013529.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus anginosus 1_2_62CV]
 gi|319812215|gb|EFW08481.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus anginosus 1_2_62CV]
          Length = 112

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKRNG VT F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRNGEVTDFNPDKIYQAILKAAQTVYVLTDD----LRQNLALVTKKVVLDLEEAGV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVENRLLGAGYITIAEHYISYRLQRDLDR 95


>gi|317493663|ref|ZP_07952084.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918606|gb|EFV39944.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 712

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I  A+++A         +++  V D   +        +       
Sbjct: 5   VIKRDGCQVPFDEQRIKEAVVRA---------AQAAGVDDT--DYCATVARVVAMQMADL 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQ+ VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  ERVDIHVIQNAVENQLMAGNYKQLARAYIEYRHDRDVSREQRGRLNQE 101


>gi|241889296|ref|ZP_04776599.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans ATCC 10379]
 gi|241864133|gb|EER68512.1| anaerobic ribonucleoside-triphosphate reductase [Gemella
           haemolysans ATCC 10379]
          Length = 727

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 20  YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79
                  K + VIKR+G +  FD  KI +AI KA  +V GK  S +      I  + +  
Sbjct: 12  AKVDSLTKNLLVIKRDGRIVRFDTEKIYKAIEKAVHSVFGKNHSVN------INGIVDNV 65

Query: 80  VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER--SDVRAAQSHSKS 137
           +  +    K    + I ++Q+ VE +L+  G   I  EYV YR  R     R+   +   
Sbjct: 66  ILEIANRFK--GNIKIYELQNIVEHTLLTLGEEAIYEEYVGYRSMRDIERERSLDINVAI 123

Query: 138 DAPIAPKLKIMMDDGTLISFNSK 160
           +  +  +  ++ ++    S    
Sbjct: 124 EKLVNREENVVNENANKDSLVFN 146


>gi|261251118|ref|ZP_05943692.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio orientalis CIP 102891]
 gi|260937991|gb|EEX93979.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio orientalis CIP 102891]
          Length = 706

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S  +     N+      +L   ++  
Sbjct: 5   VIKRDGSRAPFSRDRIQAAVEAA-------ADHNSQEIAIYALNVALAVELKLQDRDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             V I ++Q  VE  LMQ  +  + R Y+ YR +R   R  QS    +         L +
Sbjct: 56  --VEITEVQSLVEDELMQGPYKGLARSYIEYRHDRDTAREKQSALTQEIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|15675175|ref|NP_269349.1| hypothetical protein SPy_1211 [Streptococcus pyogenes M1 GAS]
 gi|19746144|ref|NP_607280.1| hypothetical protein spyM18_1163 [Streptococcus pyogenes MGAS8232]
 gi|28895963|ref|NP_802313.1| hypothetical protein SPs1051 [Streptococcus pyogenes SSI-1]
 gi|50914260|ref|YP_060232.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|56808671|ref|ZP_00366394.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus pyogenes M49 591]
 gi|71903562|ref|YP_280365.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71910738|ref|YP_282288.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|94988658|ref|YP_596759.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94990548|ref|YP_598648.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94992481|ref|YP_600580.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94994470|ref|YP_602568.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|139473716|ref|YP_001128432.1| ATP-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|209559480|ref|YP_002285952.1| Putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           NZ131]
 gi|306827309|ref|ZP_07460596.1| ATP cone domain protein [Streptococcus pyogenes ATCC 10782]
 gi|13622339|gb|AAK34070.1| hypothetical protein SPy_1211 [Streptococcus pyogenes M1 GAS]
 gi|19748321|gb|AAL97779.1| hypothetical protein spyM18_1163 [Streptococcus pyogenes MGAS8232]
 gi|28811213|dbj|BAC64146.1| hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|50903334|gb|AAT87049.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10394]
 gi|71802657|gb|AAX72010.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS6180]
 gi|71853520|gb|AAZ51543.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS5005]
 gi|94542166|gb|ABF32215.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS9429]
 gi|94544056|gb|ABF34104.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10270]
 gi|94545989|gb|ABF36036.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS2096]
 gi|94547978|gb|ABF38024.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pyogenes MGAS10750]
 gi|134271963|emb|CAM30201.1| ATP-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|209540681|gb|ACI61257.1| Putative anaerobic ribonucleotide reductase [Streptococcus pyogenes
           NZ131]
 gi|304430456|gb|EFM33478.1| ATP cone domain protein [Streptococcus pyogenes ATCC 10782]
          Length = 118

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +Q+IKR+G V  FDP KI +AI+KA   V     +     +  + ++T++ V  L + + 
Sbjct: 7   MQIIKRDGHVADFDPDKIYQAIIKAARTVYVIDDTW----RQNLTHVTKKVVIDLEEAHV 62

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                 I  +Q  VE  LM +G+  I   Y+ YR +R   R
Sbjct: 63  ER--PTINMVQSLVENRLMDAGYITIAEHYISYRLQRDLER 101



 Score = 37.9 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLE 199
              ++I+  DG +  F+  ++   + +A   +  +    +  L+   K +   L E+ +E
Sbjct: 4   DDLMQIIKRDGHVADFDPDKIYQAIIKAARTVYVIDDTWRQNLTHVTKKVVIDLEEAHVE 63

Query: 200 TALIFSSRTLIEK---EPNYAKVTARFLLEKLRREV 232
              I   ++L+E    +  Y  +   ++  +L+R++
Sbjct: 64  RPTINMVQSLVENRLMDAGYITIAEHYISYRLQRDL 99


>gi|260770526|ref|ZP_05879459.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio furnissii CIP 102972]
 gi|260615864|gb|EEX41050.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio furnissii CIP 102972]
 gi|315181612|gb|ADT88525.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio furnissii
           NCTC 11218]
          Length = 706

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+  A           +  V   I          +    K  
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESA-----------AEEVNSEIAIYALNVALAVELKLKEY 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 54  EEVRIAEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIE 103



 Score = 41.8 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNM--YDGLSESDLETA 201
           ++  DG+   FN  R++  VE A   +     + +  V       +  Y+ +  ++++T 
Sbjct: 5   VIKRDGSKAPFNRDRIQAAVESAAEEVNSEIAIYALNVALAVELKLKEYEEVRIAEIQTL 64

Query: 202 LIFS-------SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
           +          +      E  + +  AR    KL +E+   + +      +  
Sbjct: 65  VENELMQGPYKALARSYIEYRHDRDVAREKQSKLTQEIEGLIQESNADLLNEN 117


>gi|322388408|ref|ZP_08062011.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus infantis ATCC 700779]
 gi|321140721|gb|EFX36223.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus infantis ATCC 700779]
          Length = 737

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ V  +       
Sbjct: 18  VEKRDGRRVIFDVDKIDKALHKA----AEKVMDVTPLVEKRLSTLVERIVEEIHSRFPQG 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L++   + +  EY+ YR +R   R+  +   
Sbjct: 74  --VKIYEIQNIVEHELLEVKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +  A   P L +   DG  + F+  +++  + +A   + DV+           + ++ E
Sbjct: 6   LEEKAVPDPTLFVEKRDGRRVIFDVDKIDKALHKAAEKVMDVTPLVEKRLSTLVERIVEE 65

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +      + E       +T R
Sbjct: 66  IHSRFPQGVKIYEIQNIVEHELLEVKEYALAEEYITYR 103


>gi|213583801|ref|ZP_03365627.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 398

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|146318383|ref|YP_001198095.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|146320575|ref|YP_001200286.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|145689189|gb|ABP89695.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|145691381|gb|ABP91886.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|292558174|gb|ADE31175.1| Anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           GZ1]
          Length = 124

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
            +   +K   +QVIKR+G +  FDP KI +AI+KA   V     +     +  +  +T++
Sbjct: 3   GFTENQKGAFMQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETW----RKNLAQVTKK 58

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
            V  L + +     + +  +Q QVE  L+ +G+  I   Y+ YR +R   R
Sbjct: 59  VVLDLEEAHTERPTISM--VQSQVEHRLLDAGYISIAEHYISYRLQRDLER 107


>gi|459403|gb|AAC43383.1| ribonucleoside triphosphate reductase [Escherichia coli]
          Length = 229

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A E   A     V  ++               +  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAAVVSE-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   
Sbjct: 54  NQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEIRGL----VEQT 109

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           + +L++ N+ +   ++      L  + +K    +
Sbjct: 110 NASLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 143


>gi|315223014|ref|ZP_07864893.1| ATP cone domain protein [Streptococcus anginosus F0211]
 gi|315187964|gb|EFU21700.1| ATP cone domain protein [Streptococcus anginosus F0211]
          Length = 122

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QVIKRNG VT F+P KI +AI+KA   V          ++  +  +T++ V  L +  
Sbjct: 10  SMQVIKRNGEVTDFNPDKIYQAILKAAQTVYVLTDD----LRQNLALVTKKVVLDLEEAG 65

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
                + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 66  VERATISM--IQSMVENRLLGAGYITIAEHYISYRLQRDLDR 105


>gi|291086001|ref|ZP_06354610.2| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           youngae ATCC 29220]
 gi|291069121|gb|EFE07230.1| anaerobic ribonucleoside-triphosphate reductase [Citrobacter
           youngae ATCC 29220]
          Length = 707

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A         +  +   D    + E  V+ L+       
Sbjct: 1   MKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAE-VVSSLMNERSQ-- 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 51  -VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 96


>gi|307704585|ref|ZP_07641490.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
 gi|307621882|gb|EFO00914.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           mitis SK597]
          Length = 112

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  F+P KI +AI+KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MQVIKRDGEIAEFNPDKIYQAILKAAQTVYVLTDD----LRQNLAQVTKKVVLDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVEHRLLGAGYITIAEHYISYRLQRDLER 95


>gi|322375044|ref|ZP_08049558.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C300]
 gi|321280544|gb|EFX57583.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           C300]
          Length = 737

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ VT +       
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----AEKVMDVTPLVEKRLNGLVERIVTEIHSRFPQG 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 74  --VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.0 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +      P L +   DG  + F+  +++  + +A   + DV+           + +++E
Sbjct: 6   LEEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTE 65

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 66  IHSRFPQGVKIYEIQNVVEHELLEAKEYALAEEYITYR 103


>gi|307702678|ref|ZP_07639630.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
 gi|307623794|gb|EFO02779.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           oralis ATCC 35037]
          Length = 735

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ VT +       
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----AEKVMDVTPLVEKRLNGLVERIVTEIHSRFPQG 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 72  --VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 46.0 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +      P L +   DG  + F+  +++  + +A   + DV+           + +++E
Sbjct: 4   LEEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTE 63

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 64  IHSRFPQGVKIYEIQNVVEHELLEAKEYALAEEYITYR 101


>gi|157962440|ref|YP_001502474.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           pealeana ATCC 700345]
 gi|157847440|gb|ABV87939.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           pealeana ATCC 700345]
          Length = 705

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  + A  + +V + +     +            
Sbjct: 4   VIKRDGYRTPFDETRIKDAVIAAANSVGIECAEYAQQVAEKVSQTVAELEE--------- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V+I D+QD VE  LM+  H  + R Y+ YR +R   R   S    +
Sbjct: 55  --VNIHDLQDSVENLLMEGPHKSLARVYIEYRHDRDVKREVSSRLNKE 100


>gi|315612325|ref|ZP_07887238.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis ATCC 49296]
 gi|315315306|gb|EFU63345.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus sanguinis ATCC 49296]
          Length = 737

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ VT +       
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----AEKVMDVTPLVEKRLNGLVERIVTEIHSRFPQG 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 74  --VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.0 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +      P L +   DG  + F+  +++  + +A   + DV+           + +++E
Sbjct: 6   LEEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTE 65

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 66  IHSRFPQGVKIYEIQNVVEHELLEAKEYALAEEYITYR 103


>gi|293364355|ref|ZP_06611081.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus oralis ATCC 35037]
 gi|291317201|gb|EFE57628.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Streptococcus oralis ATCC 35037]
          Length = 737

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ VT +       
Sbjct: 18  VEKRDGRRVVFDVDKIDKALHKA----AEKVMDVTPLVEKRLNGLVERIVTEIHSRFPQG 73

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 74  --VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 46.0 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +      P L +   DG  + F+  +++  + +A   + DV+           + +++E
Sbjct: 6   LEEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDVTPLVEKRLNGLVERIVTE 65

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 66  IHSRFPQGVKIYEIQNVVEHELLEAKEYALAEEYITYR 103


>gi|288550521|ref|ZP_05970770.2| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314816|gb|EFC53754.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 707

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 15/153 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A         +  +   D    + E   +++ + ++   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEIVSSQMNERSQ--- 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +        +   +
Sbjct: 51  -VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQEIRGL----VEQTN 105

Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
            +L++ N+ +   ++      L  + +K    +
Sbjct: 106 SSLLNENANKDSKVIPTQRDLLAGIVAKHYARQ 138


>gi|331267142|ref|YP_004326772.1| anaerobic ribonucleotide reductase,oxygen-sensitive
           ribonucleoside-triphosphate reductase [Streptococcus
           oralis Uo5]
 gi|326683814|emb|CBZ01432.1| anaerobic ribonucleotide reductase,oxygen-sensitive
           ribonucleoside-triphosphate reductase [Streptococcus
           oralis Uo5]
          Length = 735

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ VT +       
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----AEKVMDLTPLVEKRLNGLVERIVTEIHSRFPQG 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 72  --VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            +      P L +   DG  + F+  +++  + +A   + D++           + +++E
Sbjct: 4   LEEKLATVPTLFVEKRDGRRVVFDVDKIDKALHKAAEKVMDLTPLVEKRLNGLVERIVTE 63

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 64  IHSRFPQGVKIYEIQNVVEHELLEAKEYALAEEYITYR 101


>gi|260773807|ref|ZP_05882722.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio metschnikovii CIP 69.14]
 gi|260610768|gb|EEX35972.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio metschnikovii CIP 69.14]
          Length = 706

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF   +I  A+  A           +  +     N+      +L       
Sbjct: 5   VIKRDGSKASFSRDRIQAAVESA-------ADQVTSEIAIYALNVALAVELQLE----GQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS------HSKSDAPIAPK 144
             VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS          +   A  
Sbjct: 54  QQVHIAEIQTLVENELMQGPYKGLARSYIEYRHDRDIAREKQSTLTKEIEGLIEESNADL 113

Query: 145 LKIM-MDDGTLISFNSKRLEMIVEE 168
           L      DG +I      L  IV +
Sbjct: 114 LNENANKDGKVIPTQRDLLAGIVAK 138


>gi|296876485|ref|ZP_06900536.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 15912]
 gi|296432478|gb|EFH18274.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 15912]
          Length = 112

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L +   
Sbjct: 1   MEVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVEHRLLGAGYITIAEHYISYRLQRDLER 95


>gi|163789959|ref|ZP_02184395.1| anaerobic ribonucleoside triphosphate reductase [Carnobacterium sp.
           AT7]
 gi|159874899|gb|EDP68967.1| anaerobic ribonucleoside triphosphate reductase [Carnobacterium sp.
           AT7]
          Length = 737

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-RVQDIIKNLTEQTVTRLLQH 86
            ++V+KR+G    F   KI  A++KA  ++  +   +SI  +++I++ + ++   R + +
Sbjct: 16  KIKVMKRDGREVEFKEEKIFEALLKAQRSLIKETDEKSIQELKEIVEVIKKEIAQRFVSN 75

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                 + I +IQ  VE  L+ +  H++   Y++YR  R   R+  +   
Sbjct: 76  ------IKIYEIQSIVEHVLIDAHKHELAEAYLVYRTRRDLERSQATDIN 119


>gi|270291993|ref|ZP_06198208.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M143]
 gi|270279521|gb|EFA25363.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus sp.
           M143]
          Length = 735

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KR+G    FD  KI +A+ KA      K    +  V+  +  L E+ V  +       
Sbjct: 16  VEKRDGRRVVFDVDKIDKALHKA----ADKVMDVTPLVEKRLNGLLERIVAEIHSRFPQG 71

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
             V I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 72  --VKIYEIQNVVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSE 184
            + +    P L +   DG  + F+  +++  + +A   + DV+           + +++E
Sbjct: 4   LEENLATVPTLFVEKRDGRRVVFDVDKIDKALHKAADKVMDVTPLVEKRLNGLLERIVAE 63

Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            +     G+   +++  +        E       +T R
Sbjct: 64  IHSRFPQGVKIYEIQNVVEHELLEAKEYALAEEYITYR 101


>gi|168234575|ref|ZP_02659633.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736623|ref|YP_002117372.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194712125|gb|ACF91346.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291908|gb|EDY31258.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 712

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A  A     A     V +++ +              + 
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRAAKAAGVDDAGYCATVAEVVSS-----------QMNAR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  SQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|312866583|ref|ZP_07726798.1| ATP cone domain protein [Streptococcus parasanguinis F0405]
 gi|311097882|gb|EFQ56111.1| ATP cone domain protein [Streptococcus parasanguinis F0405]
          Length = 112

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  F+P KI +AI+KA   V          ++  +  +T++    L +   
Sbjct: 1   MEVIKRSGEVVEFNPDKIYQAILKAAQVVYVLTDD----LRQNLAQVTKKVAMDLDEAQV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSLVEQRLLGAGYITIAEHYISYRLQRDLER 95


>gi|85540880|gb|ABC70825.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+  
Sbjct: 6   TFQDRWSALRPKIIKYGLCNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETV 65

Query: 801 VVNSFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIPDDL 841
             N  L+ +L    +       +  L+ H   +      +P D 
Sbjct: 66  KPNVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPKDH 109


>gi|311281208|ref|YP_003943439.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cloacae SCF1]
 gi|308750403|gb|ADO50155.1| anaerobic ribonucleoside-triphosphate reductase [Enterobacter
           cloacae SCF1]
          Length = 711

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F  ++I  AI++A  A     A     V +++               +  
Sbjct: 5   VMKRDGCKVPFTSARIQEAILRAASAAGVDDADYCATVAEVVSQ-----------QMQGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 54  EQVDISEIQTAVENQLMSGPYKQLARAYIEYRHDRDVQREKRGRLNQE 101


>gi|319947078|ref|ZP_08021312.1| ATP cone domain protein [Streptococcus australis ATCC 700641]
 gi|322389596|ref|ZP_08063145.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 903]
 gi|319747126|gb|EFV99385.1| ATP cone domain protein [Streptococcus australis ATCC 700641]
 gi|321143722|gb|EFX39151.1| ATP cone domain protein [Streptococcus parasanguinis ATCC 903]
          Length = 118

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   ++VIKR+G V  FDP KI +A++KA   V          ++  +  +T++ V  L 
Sbjct: 3   KENKMEVIKRSGEVVEFDPDKIYQAVLKAAQTVYVLTDD----LRQNLAQVTKKVVMDLE 58

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
           +       + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 59  EAKVERATISM--IQSMVEHRLLGAGYITIAEHYISYRLQRDLER 101


>gi|302669117|ref|YP_003832942.1| anaerobic ribonucleoside triphosphate reductase NrdD3 [Butyrivibrio
           proteoclasticus B316]
 gi|302397457|gb|ADL36360.1| anaerobic ribonucleoside triphosphate reductase NrdD3 [Butyrivibrio
           proteoclasticus B316]
          Length = 751

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI-IKNLTEQTVTRLLQHN 87
           + +IKRNG    FD  K+  AI KA      + +S   R+  I I  +            
Sbjct: 1   MYIIKRNGTEVEFDIEKVKTAISKA-----NEASSERARMNSIYIDAIASDVEEYANNTV 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK- 146
                + +EDI D++E  LM+    ++ + ++ YR  R+ VR A +  ++   +  +   
Sbjct: 56  ---ATLTVEDISDKIELLLMKMAP-EVAKNFMNYRHNRALVRKANTTDETILSLIERDNE 111

Query: 147 -IMMDDGTLISF 157
            +  ++      
Sbjct: 112 EVKQENSNKNPI 123


>gi|213023622|ref|ZP_03338069.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 4/129 (3%)

Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688
           VR LD ++D   + I  AK+     R +G+G++ F   L      Y+   A  +  ++ E
Sbjct: 1   VRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFE 60

Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748
            I ++ + AS ELA+E+GA   F  + + +G+ PID+     +      +N      W++
Sbjct: 61  AIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAI----VNEPLHYDWEQ 116

Query: 749 LKKRVKTIG 757
           L++ +KT G
Sbjct: 117 LRESIKTHG 125


>gi|85540868|gb|ABC70819.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540882|gb|ABC70826.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540884|gb|ABC70827.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           TS+  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+  
Sbjct: 6   TSQDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETV 65

Query: 801 VVNSFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIPDDL 841
             N  L+ +L    +       +  L+ H   +      +P D 
Sbjct: 66  KPNVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDH 109


>gi|157374739|ref|YP_001473339.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           sediminis HAW-EB3]
 gi|157317113|gb|ABV36211.1| Ribonucleoside-triphosphate reductase [Shewanella sediminis
           HAW-EB3]
          Length = 705

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A         S  I   D    +       +       
Sbjct: 4   VIKRDGYRTPFDETRIRDAVSAA-------ANSAGIDDNDYATLVANNVAESVAD-MPE- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +        +   
Sbjct: 55  --VDIHDLQDVVENQLMEGPYKSLARVYIEYRHDRDLHRETSSRLNQEIKGL----VEQS 108

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K   + 
Sbjct: 109 NAALLNENANKDSKVIPTQRDLLAGIVAKHYATR 142


>gi|78777437|ref|YP_393752.1| anaerobic ribonucleoside triphosphate reductase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497977|gb|ABB44517.1| Ribonucleoside-triphosphate reductase, anaerobic [Sulfurimonas
           denitrificans DSM 1251]
          Length = 698

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
            ++KR+G    F   KI  AI KAF +        S    +++  L  + V         
Sbjct: 4   NILKRDGTHKEFLSFKIEDAIKKAFKS--QNIIYDSSIFFNVLDELKNKRV--------- 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              + +EDIQD +E  L +S +  + R +++YR      R 
Sbjct: 53  ---IAVEDIQDLIEKELYKSRYFDVMRSFMIYRHTHKMQRD 90


>gi|85540870|gb|ABC70820.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
             +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+  
Sbjct: 6   AFQDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETV 65

Query: 801 VVNSFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIPDDL 841
             N  L+ +L    +       +  L+ H   +      +P D 
Sbjct: 66  KPNVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPKDH 109


>gi|161505067|ref|YP_001572179.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160866414|gb|ABX23037.1| hypothetical protein SARI_03201 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 707

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           +KR+G    F   +I  AI++A         +  +   D    + E   +++   ++   
Sbjct: 1   MKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ--- 50

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 51  -VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 96


>gi|223932456|ref|ZP_03624458.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|253751528|ref|YP_003024669.1| ATP-binding protein [Streptococcus suis SC84]
 gi|253753429|ref|YP_003026570.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|253755743|ref|YP_003028883.1| ATP-binding protein [Streptococcus suis BM407]
 gi|330832683|ref|YP_004401508.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis ST3]
 gi|223898910|gb|EEF65269.1| ATP-cone domain protein [Streptococcus suis 89/1591]
 gi|251815817|emb|CAZ51425.1| ATP-binding protein [Streptococcus suis SC84]
 gi|251818207|emb|CAZ56008.1| ATP-binding protein [Streptococcus suis BM407]
 gi|251819675|emb|CAR45457.1| ATP-binding protein [Streptococcus suis P1/7]
 gi|319757960|gb|ADV69902.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis JS14]
 gi|329306906|gb|AEB81322.1| oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis ST3]
          Length = 112

 Score = 77.6 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G +  FDP KI +AI+KA   V     +     +  +  +T++ V  L + + 
Sbjct: 1   MQVIKRSGEIVEFDPDKIYQAIIKAAQTVYVIDETW----RKNLAQVTKKVVLDLEEAHT 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  +Q QVE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERPTISM--VQSQVEHRLLDAGYISIAEHYISYRLQRDLER 95


>gi|269957087|ref|YP_003326876.1| anaerobic ribonucleoside-triphosphate reductase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305768|gb|ACZ31318.1| anaerobic ribonucleoside-triphosphate reductase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 765

 Score = 77.6 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 18/194 (9%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           M     ++     A P+L    P       VIKR+G  T++D  ++  AI  A+M     
Sbjct: 1   MVVVTQLDVERNVATPTLLVTAPT------VIKRDGTRTTYDLRRVRDAIRPAWM----- 49

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
            A      +  +  +       + +   +   V + +IQ  VE +L+++GH  +   Y  
Sbjct: 50  RAWDDAVDESELAAVVAAVDGEIFRRFPTD--VKVYEIQAIVEQTLIETGHGDVAEIYAT 107

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKI----MMDDGTLISFNSKRLEMIVEEACSGLQDV 176
           YR E+   R      +         ++       D  +      R+   V +A  GL  +
Sbjct: 108 YRLEKDLRRKQAFSVEHQVGRLTDSEVANENANKDSRVFHVQRDRMAGSVAKA-RGLAML 166

Query: 177 SSKIVLSETYKNMY 190
             ++  +     ++
Sbjct: 167 PPRVASAHIKGQIH 180


>gi|254508355|ref|ZP_05120477.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus 16]
 gi|219548769|gb|EED25772.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus 16]
          Length = 706

 Score = 77.6 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+  A           S        N+      +L   ++  
Sbjct: 5   VIKRDGSRAEFTRDRIQAAVEAA-------ADHNSKETAIYALNVALAVELKLQDRDE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKI 147
             V I ++Q  VE  LMQ  + ++ R Y+ YR +R   R  QS    +         L +
Sbjct: 56  --VEITEVQKLVEDELMQGPYKELARAYIEYRHDRDIAREKQSALTQEIEGLIEESNLDL 113

Query: 148 M----MDDGTLISFNSKRLEMIVEE 168
           +      DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|116516887|ref|YP_815706.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae D39]
 gi|116077463|gb|ABJ55183.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           pneumoniae D39]
          Length = 735

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI     KA      K    +  V+  + +LTE+ +T +  
Sbjct: 11  LPTLFVEKRDGRRVVFDVDKID----KALHTAADKVMDVTPLVEKRLNDLTERIITEIHS 66

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 67  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 115



 Score = 45.6 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  +  A   + DV+           + +++
Sbjct: 3   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERIIT 62

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 63  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 101


>gi|9630433|ref|NP_046865.1| gp50 [Mycobacterium phage D29]
 gi|6136221|sp|O64240|VG50_BPMD2 RecName: Full=Putative adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; AltName:
           Full=Gp50
 gi|3172297|gb|AAC18490.1| putative ribonucleotide reductase [Mycobacterium phage D29]
          Length = 693

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 138/468 (29%), Gaps = 120/468 (25%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +++ +  A  V  GG R+ A  A +      VE F ++++    D       N +  + D
Sbjct: 261 MEIDHAIAQCVVAGGVRRSARMAMMHWADWQVETFTNIKQ----DSGSHWTTNISVEVDD 316

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            F                                                R   A  + +
Sbjct: 317 AFWSLAKAPVD-----------------------------------PLNPRSTKAHRVLK 341

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
            +       G P +      N+  P      V  +N C EITL         CNLG INL
Sbjct: 342 ALSEGAVRNGEPGMWDSSLSNVGEPN----EVVCTNPCGEITLEP----WEPCNLGHINL 393

Query: 608 LAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            A   +  + DY  L    R   R L      +     K+++    +R IG+G +G  S 
Sbjct: 394 AAFVTDAGKTDYIDLIRAHRLMTRFL-IRATFSAVADPKSREVLDRNRRIGVGHLGVASY 452

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L L    Y+                                              P D  
Sbjct: 453 LALTGRRYSQ--------------------------------------------APGDKR 468

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRV--KTIGMRNSNCMAIAPTATIANICGVSQSIDP 784
                      ++R +     EL+  V  K           +APT TIA + GVS+ I P
Sbjct: 469 FTAFLREMAAEVDRAAEEFSHELRIPVPVKK--------RTVAPTGTIAKMPGVSEGIHP 520

Query: 785 SYQNLYVKSNMSGDFTVV-NSFLV--NELKQRDLWDEAMISDLKYHDGSIG--NIERIPD 839
            +   +++      F+V+ N   +  ++        E    D   +   +     + + +
Sbjct: 521 IFSRYFIRRIR---FSVLDNDQFLTASQYAADGYHVEKDQYDKSGNTWVVEIPTKDTLVE 577

Query: 840 DLKKIH--------ATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLD 878
            +             +A E+    L+   +  Q  W D A S    +D
Sbjct: 578 AVAARFGRDAEDIVESANELTLHQLLAFQALYQTCWADNAVSFTANVD 625


>gi|85540876|gb|ABC70823.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+  
Sbjct: 6   TFQDRWSALRPKIVKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETV 65

Query: 801 VVNSFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIPDDL 841
             N  L+ +L    +       +  L+ H   +      +P D 
Sbjct: 66  KPNVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDH 109


>gi|85540872|gb|ABC70821.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540874|gb|ABC70822.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
 gi|85540878|gb|ABC70824.1| ribonucleotide reductase large subunit [Tortoise herpesvirus]
          Length = 115

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800
           T +  W  L+ ++   G+ NS  +A+ PT + + I   S++  P + NLY K +++G+  
Sbjct: 6   TFQDRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETV 65

Query: 801 VVNSFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIPDDL 841
             N  L+ +L    +       +  L+ H   +      +P D 
Sbjct: 66  KPNVMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDH 109


>gi|15902227|ref|NP_357777.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
           pneumoniae R6]
 gi|15457727|gb|AAK98987.1| Ribonucleotide reductase, class III, anaerobic [Streptococcus
           pneumoniae R6]
          Length = 737

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + V KR+G    FD  KI     KA      K    +  V+  + +LTE+ +T +  
Sbjct: 13  LPTLFVEKRDGRRVVFDVDKID----KALHTAADKVMDVTPLVEKRLNDLTERIITEIHS 68

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                  + I +IQ+ VE  L+++  + +  EY+ YR +R   R+  +   
Sbjct: 69  RFPQG--IKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDIN 117



 Score = 45.6 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLS 183
             +    I P L +   DG  + F+  +++  +  A   + DV+           + +++
Sbjct: 5   ALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERIIT 64

Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           E +     G+   +++  +        E       +T R
Sbjct: 65  EIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYR 103


>gi|295104971|emb|CBL02515.1| anaerobic ribonucleoside-triphosphate reductase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 731

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD SKI  AI KA     G       RV + I +        +       
Sbjct: 4   VIKRDGTKVPFDKSKIVNAIEKAMTNTTGGVD---SRVSNAIADYIADIHDTM------- 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL--KIM 148
               +E IQD V   L  S    +   Y  +R  R ++R  Q        I      K+ 
Sbjct: 54  ---SVEQIQDVVIDQLKNSPLSDVADAYSHWRILRQEIREKQRAYGEILSICDVDNEKVK 110

Query: 149 MDDGTLISF 157
            ++      
Sbjct: 111 QENSNKNPV 119



 Score = 41.4 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET---YKNMYDGLSESDLETAL 202
            ++  DGT + F+  ++   +E+A +         V +       +++D +S   ++  +
Sbjct: 3   YVIKRDGTKVPFDKSKIVNAIEKAMTNTTGGVDSRVSNAIADYIADIHDTMSVEQIQDVV 62

Query: 203 I 203
           I
Sbjct: 63  I 63


>gi|163751120|ref|ZP_02158350.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           benthica KT99]
 gi|161329076|gb|EDQ00148.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           benthica KT99]
          Length = 705

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A         + S  ++D    ++      + +     
Sbjct: 4   VIKRDGYRTPFDETRIRDAVVAA---------ANSAGIEDKSYAVS--VAASVAKCVAEH 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             + I ++QD VE  LM+  +  + R Y+ YR +R   R   S    +        +   
Sbjct: 53  AEIDIHELQDLVENHLMEGPYKSLARVYIEYRHDRDLHRETSSRLNQEIRGL----VDQT 108

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + +K   + 
Sbjct: 109 NAELLNENANKDAKVIPTQRDLLAGIVAKHYATR 142


>gi|251779984|ref|ZP_04822904.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084299|gb|EES50189.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 701

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KIS+AI  A  A+E     R  +V + ++ +               
Sbjct: 4   VVKRDGRTVEFNGEKISQAIKGA--ALEIGVTLRESQVLETVQKVIMYIEDTKKDK---- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + +E IQ+ VE +L +     I   Y  YR ER+ VR  +S       
Sbjct: 58  --ITVEAIQNLVEKALGEED-KNIAFAYSSYRRERTRVRDIKSDLMKAIE 104


>gi|188589097|ref|YP_001919565.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499378|gb|ACD52514.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 701

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F+  KIS+AI  A  A+E     R  +V + ++ +               
Sbjct: 4   VVKRDGRTVEFNGEKISQAIKGA--ALEIGVTLRESQVLETVQKVIMYIEDTKKDK---- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + +E IQ+ VE +L +     I   Y  YR ER+ VR  +S       
Sbjct: 58  --ITVEAIQNLVEKALGEED-KNIAFAYSSYRRERTRVRDIKSDLMKAIE 104


>gi|322385546|ref|ZP_08059190.1| ATP cone domain protein [Streptococcus cristatus ATCC 51100]
 gi|321270284|gb|EFX53200.1| ATP cone domain protein [Streptococcus cristatus ATCC 51100]
          Length = 112

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G V  FDP KI +A++KA   V          ++  +  +T++    L +   
Sbjct: 1   MKVIKRSGEVVDFDPDKIYQAVLKAAQTVYVLTDD----LRQNLALVTKKVALDLEEAKV 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVR 129
               + +  IQ  VE  L+ +G+  I   Y+ YR +R   R
Sbjct: 57  ERATISM--IQSMVENRLLGAGYITIAEHYISYRLQRDLER 95


>gi|126653223|ref|ZP_01725344.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
 gi|126590054|gb|EAZ84181.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp.
           B14905]
          Length = 494

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 313 RIEMPQAFF-----MRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTPTLFNSGTR 364
            +E P   F      R A GLA+ E   EK      +FY  L S  F+ +   ++ +G+ 
Sbjct: 123 VLEKPLEIFYEQIAKRNATGLAVVEKTPEKRQEWFEKFYEQLVSLKFIPAGRVIYGAGSE 182

Query: 365 HP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422
                 +C++   V D   GI    ++   +    GG+G + + +R       G NGKS 
Sbjct: 183 TDVTFFNCYVMPFVADSREGISDHRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSS 242

Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
           G + +L         V QGG R+GA    L  WH D+ EF+  +    
Sbjct: 243 GSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFIISKMQNP 290



 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD---EVSDLHDLYGKEFEI 520
           D    T  +       N +  +   FM+ V  +A + L  P       +    Y  E+  
Sbjct: 355 DGGTYTVHNSEFLTGANISVTLTKEFMEAVENDADFELRFPAVEEYSKEEMHAYNTEWHH 414

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVV 579
             +  E +    +I+ +R I A  LW  +      +  P I F D  N  +  + +   V
Sbjct: 415 VGDVREWEKMGYKIRTYRTIKAKELWNLINVCATYSAEPGIFFIDNANDMTNAKAYGQSV 474

Query: 580 HSSNLCTEITLNSS 593
            ++N C E  L   
Sbjct: 475 VATNPCGEQPLAPY 488


>gi|300718561|ref|YP_003743364.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia billingiae
           Eb661]
 gi|299064397|emb|CAX61517.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia billingiae
           Eb661]
          Length = 709

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD ++I  AI        G   +  I  Q     +T Q   +L Q + 
Sbjct: 1   MRVIKRDGCSMPFDATRIGDAIK-------GAAHAAGIEDQGYCAEVTVQICQQLQQQDC 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
                 I DIQ  VE  LM   + ++ R Y+ YR +R   R  +    + 
Sbjct: 54  LD----IHDIQRAVENQLMAGRYPELARTYIEYRHDRDIARELRGKLNTA 99


>gi|326790793|ref|YP_004308614.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
 gi|326541557|gb|ADZ83416.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
          Length = 705

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +F+ +KI  AI+++         ++++ V   I ++T +   R+       
Sbjct: 5   VIKRDGRKVTFNTTKIENAILRS---------AKNVEVDIPISDITSKVTGRIQDLYS-- 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             + +E IQD +E +LM      +   Y  YR+ER+ +R  +S       
Sbjct: 54  YEITVEQIQDVIEDTLMDLQLEALKNSYANYRKERTRIRDLKSELMDTVH 103



 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 16/180 (8%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYD----GLSESDLET 200
            ++  DG  ++FN+ ++E  +  +   ++ D+    + S+    + D     ++   ++ 
Sbjct: 4   YVIKRDGRKVTFNTTKIENAILRSAKNVEVDIPISDITSKVTGRIQDLYSYEITVEQIQD 63

Query: 201 ALIFSSRTLIEK-----EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
            +  +   L  +       NY K   R     L+ E++ TV+    +             
Sbjct: 64  VIEDTLMDLQLEALKNSYANYRKERTRI--RDLKSELMDTVHNIGIETDRDNANVGNNFS 121

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315
                      +  + S M   L  L      + D  +  L    L         G   E
Sbjct: 122 SKLLRIASETNKWHNLSKMPKHLAKL----HEQGDLYYHDLDSYNLTTNCLHIDTGKVFE 177


>gi|213421653|ref|ZP_03354719.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 152

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650
           N  + E A+C L + NL A         D+L      AVR LD ++D   + I  AK+  
Sbjct: 3   NDENGEIALCTLSAFNLGAIKT-----LDELEELAILAVRALDALLDYQDYPIPAAKRGA 57

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
              R +G+G++ F   L      Y+   A  +  ++ E I ++ + AS ELA+E+GA   
Sbjct: 58  MGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPW 117

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749
           F  + + +G+ PID+     +      +N      W++L
Sbjct: 118 FNETTYAKGILPIDTYKKDLDAI----VNEPLHYDWEQL 152


>gi|312864356|ref|ZP_07724589.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           downei F0415]
 gi|311100077|gb|EFQ58288.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           downei F0415]
          Length = 735

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + VIKR+G   SFD  KI +A++KA        +  S  ++  +K + ++ V  +   
Sbjct: 13  PEITVIKRDGRHVSFDSDKIYQALIKA----SQNVSHMSPLMEVKLKGICDRIVAEIANR 68

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
             +   + I +IQ  VE  L+ +  + I +EY+ YR +R   R+  +            K
Sbjct: 69  FMAD--IKIYEIQSIVEHELLNANEYAIAQEYINYRTQRDFARSQATDINFTID-----K 121

Query: 147 IMMDDGTLISFNSKR 161
           ++  D T+++ N+ +
Sbjct: 122 LINKDQTVVNENANK 136



 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS----------KIVLSETYKNMY 190
             P++ ++  DG  +SF+S ++   + +A   +  +S             +++E      
Sbjct: 11  TDPEITVIKRDGRHVSFDSDKIYQALIKASQNVSHMSPLMEVKLKGICDRIVAEIANRFM 70

Query: 191 DGLSESDLETAL 202
             +   ++++ +
Sbjct: 71  ADIKIYEIQSIV 82


>gi|197337531|ref|YP_002157872.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           MJ11]
 gi|197314783|gb|ACH64232.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           MJ11]
          Length = 706

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   ++  S+I  A+  A           S +V   I++  +     +    +  
Sbjct: 5   VIKRDGSRAAYKSSRIIDAVKGA-----------SEQVTPEIESYAKLVAHAVEIALQGQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKI-TREYVLYREERSDVRAAQSHSKS------DAPIAP 143
             V I  IQ+ VE  LM  G HK+  R Y+ YR +R   R   S          +   A 
Sbjct: 54  QEVGIRQIQELVENELM-QGPHKVLARAYIEYRHDRDIAREKISVLNKEISGLIEQSNAE 112

Query: 144 KLKIM-MDDGTLISFNSKRLEMIVEE 168
            L      DG +I      L  IV +
Sbjct: 113 LLNENANKDGKVIPTQRDLLAGIVAK 138


>gi|223934158|ref|ZP_03626100.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           89/1591]
 gi|330833719|ref|YP_004402544.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           ST3]
 gi|223897180|gb|EEF63599.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           89/1591]
 gi|329307942|gb|AEB82358.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           ST3]
          Length = 723

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  
Sbjct: 12  ELLVLKRDGRTVSFDQDKIFSALRRANQELEHPVSEAGLKI------VLEAVLAEIGRRF 65

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           +    V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 66  EKD--VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 116


>gi|59713464|ref|YP_206239.1| anaerobic ribonucleoside triphosphate reductase [Vibrio fischeri
           ES114]
 gi|59481712|gb|AAW87351.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio fischeri
           ES114]
          Length = 706

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 20/146 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   ++  S+I  A+  A           S +V   I++  +     +    +  
Sbjct: 5   VIKRDGSRAAYKSSRIIDAVKGA-----------SEQVTPEIESYAKLVAHAVEIALQGQ 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKI-TREYVLYREERSDVRAAQSHSKS------DAPIAP 143
             V I  IQ+ VE  LM  G HK+  R Y+ YR +R   R   S          +   A 
Sbjct: 54  QEVGIRQIQELVENELM-QGPHKVLARAYIEYRHDRDIAREKISVLNKEISGLIEQSNAE 112

Query: 144 KLKIM-MDDGTLISFNSKRLEMIVEE 168
            L      DG +I      L  IV +
Sbjct: 113 LLNENANKDGKVIPTQRDLLAGIVAK 138


>gi|325847808|ref|ZP_08170030.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480826|gb|EGC83879.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 706

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 22/180 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+KRNG    FD  KI  AI KA  +  G            I+N  E+    + +  ++
Sbjct: 3   KVVKRNGQKVDFDKEKIKIAIEKAMNSPNGV----------FIENQAEEIANEIEKSVEN 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK--LKI 147
              + I  I+D+V   L+   +    + Y  YR  ++  RAA +       +  +  + +
Sbjct: 53  KREISIYQIEDRVYYKLIDKKNPATAKSYEAYRSVQAYKRAANTTDDDIIGLLERTNIDV 112

Query: 148 MMDDGTLISFNSKRLEMIVE-EACSGLQD---VSSKIVLSETYKNMYDG-LSESDLETAL 202
           M ++       +     ++  E    L     + + +V +       DG +   DL+  +
Sbjct: 113 MDENSNKNPLIASTQRDLIAGEVSKDLAKRKLIDADLVEAHE-----DGAIHIHDLDYLI 167


>gi|253584288|ref|ZP_04861486.1| ribonucleoside-triphosphate reductase [Fusobacterium varium ATCC
           27725]
 gi|251834860|gb|EES63423.1| ribonucleoside-triphosphate reductase [Fusobacterium varium ATCC
           27725]
          Length = 748

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++ ++VIKRNG + +F+  KI + + K                +  I+++    V ++  
Sbjct: 1   MQKIEVIKRNGSIVTFNKEKIEKVLEK-------IDKEVKFIDKVSIEHMMNDIVKKIN- 52

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
                  + +E IQD V  +L  +G  +  + +  YR +R++ R  ++
Sbjct: 53  ---GNTRMSVEAIQDIVFYTLCTNGLFEQAKAFQTYRTQRAEQRLMEA 97


>gi|113951970|gb|ABI48920.1| NrdA [Enterobacteria phage LZ2]
          Length = 150

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 36/172 (20%)

Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817
           +RNS   A+ P  + + +   +  I+P    + VK +  G F  V   +       DL+D
Sbjct: 1   IRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEGSFNQVVPNIE---HNIDLYD 57

Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877
                  K +               K + T             +   KW+ Q+ S N Y 
Sbjct: 58  YTWKLAKKGN---------------KPYLT-----------QVAIMLKWVCQSASANTYY 91

Query: 878 D-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           D       +     +       W  G+K  YY  +R  +  +   ++    +
Sbjct: 92  DPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSGTDDYEIETPKAE 143


>gi|289449636|ref|YP_003474856.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184183|gb|ADC90608.1| anaerobic ribonucleoside-triphosphate reductase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 736

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            ++VIKR+G   +F+  KI +A++KA    E  G     R+ + +  L +     +    
Sbjct: 16  DLKVIKRDGRKVAFNDEKILQALIKA--ETETNGIPTDERL-ERLSQLVQIINCEIADRF 72

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
                + I +IQ+ VE  L++    ++   Y+ YR +R   RA  +   
Sbjct: 73  HQD--IKIYEIQNIVEHFLLEEHEVELATAYIRYRSQRDIDRAKATDIN 119


>gi|294141701|ref|YP_003557679.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           violacea DSS12]
 gi|293328170|dbj|BAJ02901.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           violacea DSS12]
          Length = 705

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A         + S  + D    ++      + +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVVAA---------ANSAGIDDKNYAMS--VADSVAKCVADK 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             + I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 53  TEIDIHDLQDLVENHLMEGPYKSLARVYIEYRHDRDLHRETSSRLNQE 100


>gi|327197763|ref|YP_004301461.1| gp128 [Brochothrix phage A9]
 gi|299810363|gb|ADJ53162.1| gp128 [Brochothrix phage A9]
          Length = 727

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 8/206 (3%)

Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502
           +R GA   YL  +H D+  FL  +K   D++ R   ++    +PD F + V  +    LF
Sbjct: 2   QRNGAGAVYLNVFHPDIINFLATKKENADEKVRIKTLSMGLILPDKFYELVGNDDYMYLF 61

Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWI 561
           SP    D+   YGK F       E         + + +I A  L  ++  +  E G+P+I
Sbjct: 62  SP---YDVEREYGKPFSYINITEEYDNLVENKSITKSRIKARQLNDEISKLQQEAGYPYI 118

Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----SEETAVCNLGSINLLAHFANNQFD 617
             +D  N+ +      ++ +  L  +  +N+       E         N++        D
Sbjct: 119 INEDTVNLANAGDGKVIMSNLCLTGDTRINTDIGYRKLEDLHTTQDDFNVVVDNRAKNMD 178

Query: 618 YDKLASTIRTAVRVLDNVIDINCHTI 643
            +    ++ ++ +V+    D + + +
Sbjct: 179 INDYGVSLTSSTKVVKTAEDADVYKL 204


>gi|282600036|ref|ZP_05972779.2| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rustigianii DSM 4541]
 gi|282566824|gb|EFB72359.1| anaerobic ribonucleoside-triphosphate reductase [Providencia
           rustigianii DSM 4541]
          Length = 728

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  +I         AV    A+  ++  D   ++      +L       
Sbjct: 21  VIKRDGCQVNFDLPRIQE-------AVRRAAAAVDVKDDDYCHHVATTVAEQLCCR---- 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR +R   R  +S    D
Sbjct: 70  ETVDIAEIQDAVEDQLMSGPYKDLARAYIEYRHDRDSEREKRSKLTHD 117


>gi|302024619|ref|ZP_07249830.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus suis
           05HAS68]
          Length = 723

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  +  
Sbjct: 15  VLKRDGRTVSFDQDKIFSALRRANQELEHPVSEAGLKI------VLEAVLAEIGRRFEKD 68

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 69  --VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 116


>gi|81429068|ref|YP_396068.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610710|emb|CAI55761.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 738

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 23  PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           P+    ++V+KR+G +  F   KI +A++KA   V+ +          I+ ++    V+ 
Sbjct: 10  PKMDLEIKVLKRDGRILPFSADKIEQAVIKAAKNVKDELEPL---DYQILNSVATDVVSE 66

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136
           +         V I +IQ+ VE  L++   + I +EY+ YR +R   R   +   
Sbjct: 67  VGARFDKD--VKIYEIQNIVEHKLLEHHQYDIAQEYINYRTQRDFARNKATDIN 118



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVS----- 177
           ++R  Q     D  +  ++K++  DG ++ F++ ++E  V +A       L+ +      
Sbjct: 3   EIREEQ-----DPKMDLEIKVLKRDGRILPFSADKIEQAVIKAAKNVKDELEPLDYQILN 57

Query: 178 --SKIVLSETYKNMYDGLSESDLETAL 202
             +  V+SE        +   +++  +
Sbjct: 58  SVATDVVSEVGARFDKDVKIYEIQNIV 84


>gi|167624610|ref|YP_001674904.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354632|gb|ABZ77245.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           halifaxensis HAW-EB4]
          Length = 705

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A         S  I   +  + + E     + Q     
Sbjct: 4   VIKRDGYRTPFDETRIKDAVIAA-------ANSAGIECAEYAQQIAENVRESVSQL---- 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V+I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 53  AEVNIHDLQDTVENLLMEGPYKSLARVYIEYRHDRDTNREVSSRLNKE 100


>gi|213417043|ref|ZP_03350187.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 142

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 8/146 (5%)

Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510
           +   WH++VE  L L+ N G +  R   M+    I  L   R+ +    TLFSP +V  L
Sbjct: 1   FYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGDITLFSPSDVPGL 60

Query: 511 HDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
           +D +     EFE  Y  YE      +    +++ AV L+  M+     TG  +I   D C
Sbjct: 61  YDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHC 116

Query: 568 NIRSPQQH-VGVVHSSNLCTEITLNS 592
           N  SP    V  V  SNLC EI L +
Sbjct: 117 NTHSPFDPVVAPVRQSNLCLEIALPT 142


>gi|322510781|gb|ADX06095.1| putative ribonucleoside-diphosphate reductase ATP-cone domain
           protein [Organic Lake phycodnavirus 1]
          Length = 97

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 8/97 (8%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202
            + ++  +      +  ++   V +       ++    ++ +    ++D +  S ++  L
Sbjct: 1   MIHVLKRNSKKEVLSYDKILERVNKFIVKYNLNIQGSGLVLKVIDQLHDNIKTSQIDELL 60

Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239
                ++     +Y+K+     +    +E   T+++ 
Sbjct: 61  AEQCASMGTIHYDYSKLAGYICISNHHKETKRTLFEV 97


>gi|257469813|ref|ZP_05633905.1| anaerobic ribonucleoside triphosphate reductase [Fusobacterium
           ulcerans ATCC 49185]
 gi|317064043|ref|ZP_07928528.1| anaerobic ribonucleotide reductase [Fusobacterium ulcerans ATCC
           49185]
 gi|313689719|gb|EFS26554.1| anaerobic ribonucleotide reductase [Fusobacterium ulcerans ATCC
           49185]
          Length = 748

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  ++VIKRNG + +F+  KI + + K                +  IK + +  V ++  
Sbjct: 1   MHKIEVIKRNGSIVTFNKEKIEKVLEK-------IDKEVKFIDKVTIKQMMDDIVIKING 53

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           H +    + +E IQD V  +L  +G  +  + +  YR +R++ R  ++
Sbjct: 54  HTR----MSVEAIQDIVFYTLCTNGLFEQAKAFQTYRTQRAEQRLKEA 97


>gi|253752756|ref|YP_003025897.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           SC84]
 gi|253754581|ref|YP_003027722.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           P1/7]
 gi|253756514|ref|YP_003029654.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           BM407]
 gi|251817045|emb|CAZ52697.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           SC84]
 gi|251818978|emb|CAZ56825.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           BM407]
 gi|251820827|emb|CAR47593.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           P1/7]
 gi|319759174|gb|ADV71116.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus suis
           JS14]
          Length = 723

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  
Sbjct: 12  ELLVLKRDGRTVSFDQDKIFSALQRANQELEHPVSEAGLKI------VLEAVLAEIGRRF 65

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           +    V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 66  EKD--VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 116


>gi|213028162|ref|ZP_03342609.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 113

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    F   +I  AI++A         +  +   D    + E   +++   ++  
Sbjct: 5   VMKRDGCKVPFKSERIKEAILRA-------AKAAGVDDADYCATVAEVVSSQMNARSQ-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 56  --VDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 101


>gi|146319772|ref|YP_001199484.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus suis
           05ZYH33]
 gi|146321971|ref|YP_001201682.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus suis
           98HAH33]
 gi|145690578|gb|ABP91084.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 05ZYH33]
 gi|145692777|gb|ABP93282.1| Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Streptococcus suis 98HAH33]
 gi|292559379|gb|ADE32380.1| putative Ribonucleoside-triphosphate reductase [Streptococcus suis
           GZ1]
          Length = 728

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            + V+KR+G   SFD  KI  A+ +A   +E   +   +++      + E  +  + +  
Sbjct: 17  ELLVLKRDGRTVSFDQDKIFSALQRANQELEHPVSEAGLKI------VLEAVLAEIGRRF 70

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           +    V I +IQ  VE  L+++  + +   Y+ YR  R   R   +    +  
Sbjct: 71  EKD--VQIYEIQTVVEQELLKAHLYDLAELYIQYRTRRDFRRHQATDINFEIH 121


>gi|120599363|ref|YP_963937.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           W3-18-1]
 gi|146292640|ref|YP_001183064.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           putrefaciens CN-32]
 gi|120559456|gb|ABM25383.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           W3-18-1]
 gi|145564330|gb|ABP75265.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           putrefaciens CN-32]
 gi|319425944|gb|ADV54018.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella
           putrefaciens 200]
          Length = 705

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+M A  +V  +            ++        + Q   S 
Sbjct: 4   VIKRDGCRTPFDETRIRDAVMAAANSVGIED-----------EDYAATVAACVSQRVASL 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +
Sbjct: 53  TEVDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICREATSKLNLE 100


>gi|317471779|ref|ZP_07931118.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900756|gb|EFV22731.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 719

 Score = 74.9 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FDPSKI  AI+KA     G             +   +     + + ++
Sbjct: 1   MKVIKRNGSKVDFDPSKIELAILKAMRYGSGVVD----------EKCAKDISFEIHEEHQ 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               + I  I+DQV   L+Q       + Y  YR+ R   R  
Sbjct: 51  GDEDISIYRIEDQVFEKLIQKDQILTAKAYEGYRKVREFQRET 93


>gi|167746967|ref|ZP_02419094.1| hypothetical protein ANACAC_01679 [Anaerostipes caccae DSM 14662]
 gi|167653927|gb|EDR98056.1| hypothetical protein ANACAC_01679 [Anaerostipes caccae DSM 14662]
          Length = 719

 Score = 74.9 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FDPSKI  AI+KA     G             +   +     + + ++
Sbjct: 1   MKVIKRNGSKVDFDPSKIELAILKAMRYGSGVVD----------EKCAKDISFEIHEEHQ 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               + I  I+DQV   L+Q       + Y  YR+ R   R  
Sbjct: 51  GDEDISIYRIEDQVFEKLIQKDQILTAKAYEGYRKVREFQRET 93


>gi|149190192|ref|ZP_01868467.1| anaerobic ribonucleoside triphosphate reductase [Vibrio shilonii
           AK1]
 gi|148835939|gb|EDL52901.1| anaerobic ribonucleoside triphosphate reductase [Vibrio shilonii
           AK1]
          Length = 706

 Score = 74.9 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I  A+            S +      ++   +     +    +  
Sbjct: 5   VIKRDGSRAPFTKDRIEAAV-----------VSAAEHADKELEIYAKNVALAVELKLQDC 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I++IQ  VE  LMQ  +  + R Y+ YR +R   R  +S    +  
Sbjct: 54  EHVDIQEIQTAVENELMQGPYKGLARSYIEYRHDRDIAREKKSALTKEIE 103


>gi|226941177|ref|YP_002796251.1| anaerobic ribonucleoside triphosphate reductase [Laribacter
           hongkongensis HLHK9]
 gi|226716104|gb|ACO75242.1| NrdD [Laribacter hongkongensis HLHK9]
          Length = 705

 Score = 74.5 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IKR+G    F+ ++I+ A+  A  A     A            L       +       
Sbjct: 5   IIKRDGCRAPFNATRIAEAVDAARRACAHADAG-----------LGNALARTIGDELAGR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
             V I +IQ +VE  LM     ++ R Y+ YR +R   R A+     D  
Sbjct: 54  EEVDIHEIQTRVEDLLMAQAP-EVARAYIEYRHDRDLAREARGRLAQDIA 102


>gi|323448022|gb|EGB03926.1| hypothetical protein AURANDRAFT_7614 [Aureococcus anophagefferens]
          Length = 86

 Score = 74.5 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554
            N  W+L  P+E   L D +G EFE  YE YE      E +  + I A  LW  +L    
Sbjct: 1   ANGFWSLMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWFAILDSQV 55

Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +TG P++ +KD CN +S Q+H+G + SSNLC
Sbjct: 56  KTGTPYMLYKDACNDKSNQKHLGTIKSSNLC 86


>gi|212635935|ref|YP_002312460.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           piezotolerans WP3]
 gi|212557419|gb|ACJ29873.1| Ribonucleoside-triphosphate reductase [Shewanella piezotolerans
           WP3]
          Length = 705

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A         + S  + D      E+            
Sbjct: 4   VIKRDGYRTPFDETRIKDAVIAA---------ANSAGIDDSAY--AEKVAKNAADSVAML 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             ++I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 53  DEINIHDLQDAVENLLMEGPYKSLARVYIEYRHDRDIKREVSSRLNKE 100


>gi|242240979|ref|YP_002989160.1| anaerobic ribonucleoside triphosphate reductase [Dickeya dadantii
           Ech703]
 gi|242133036|gb|ACS87338.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech703]
          Length = 712

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I  A++K            +        +        + Q  +  
Sbjct: 5   VIKRDGCQVPFDENRIKDAVLK-----------AAQAADVDDADYCATVACAVAQQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  ARVDIREIQNAVENLLMSGRYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|226331039|ref|ZP_03806557.1| hypothetical protein PROPEN_04969 [Proteus penneri ATCC 35198]
 gi|225201834|gb|EEG84188.1| hypothetical protein PROPEN_04969 [Proteus penneri ATCC 35198]
          Length = 86

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904
              +I++ +   + IDQ  SL L+  +  + + ++     AW  G+KT YY+R
Sbjct: 15  QKKIIDTYAEASQHIDQGLSLTLFFSDEATTRDINKAQIYAWRKGIKTLYYIR 67


>gi|308049531|ref|YP_003913097.1| anaerobic ribonucleoside-triphosphate reductase [Ferrimonas
           balearica DSM 9799]
 gi|307631721|gb|ADN76023.1| anaerobic ribonucleoside-triphosphate reductase [Ferrimonas
           balearica DSM 9799]
          Length = 706

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F P  I +A+++A         + +    D++          +    +  
Sbjct: 5   VIKRDGCRVPFKPELIQQAVLRA---------ATAAGCDDLVYA--AGVAQAVAAQLEGE 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  IQD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 54  SEVAINRIQDAVENQLMEGPYKDLARSYIEYRHDRDLAREKASRLNQE 101


>gi|224541172|ref|ZP_03681711.1| hypothetical protein CATMIT_00325 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525923|gb|EEF95028.1| hypothetical protein CATMIT_00325 [Catenibacterium mitsuokai DSM
           15897]
          Length = 722

 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   +FD SKI  AI+KA     G          +I   ++ +        + 
Sbjct: 1   MEVIKRDGSKVAFDGSKIENAILKAMRYGSGIVKP------EIASKISHEIED--WHKSS 52

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
            A  + I  I+ QV   L++ G     + Y  YR+ R   R  
Sbjct: 53  GAASISIYRIEGQVFEKLIEKGEVLTAKAYEGYRKVREFQRET 95



 Score = 39.1 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 53/153 (34%), Gaps = 28/153 (18%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           ++++  DG+ ++F+  ++E  + +A      +    + S+    +               
Sbjct: 1   MEVIKRDGSKVAFDGSKIENAILKAMRYGSGIVKPEIASKISHEI--------------- 45

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ----KATHHEMQCLYPEYFCRYI 260
                  ++ + +   A   + ++  +V   + +K +    KA     +    +     I
Sbjct: 46  -------EDWHKSSGAASISIYRIEGQVFEKLIEKGEVLTAKAYEGYRKVREFQRETNTI 98

Query: 261 EEGVKA--RLLHESMMDFDLVYLANDLKYERDF 291
           +  +       ++  MD +    A  L  +RD 
Sbjct: 99  DNAIYGIVNQTNKEAMDENSNKDATVLATQRDL 131


>gi|167957418|ref|ZP_02544492.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7c]
          Length = 78

 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922
           QKW+DQA S N+YL+     +   IY +AW  GLKTTYYL  +     E++T+K     
Sbjct: 1   QKWVDQAISRNMYLETRDIDEYVKIYSEAWRRGLKTTYYLHVKPRHQSEQTTVKSDKSA 59


>gi|210621330|ref|ZP_03292592.1| hypothetical protein CLOHIR_00535 [Clostridium hiranonis DSM 13275]
 gi|210154813|gb|EEA85819.1| hypothetical protein CLOHIR_00535 [Clostridium hiranonis DSM 13275]
          Length = 706

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD +KI  AI+KA            I + +I  N++            
Sbjct: 1   MKVIKRDGSTVPFDRTKIEVAILKAM------KNGSGIYIPEIASNISIDAEKHFENFKP 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 I  I+  V   L+  G  +  R Y  YR  +S  R     + +D  I   +   
Sbjct: 55  ---TPTIHQIEVYVYERLIHYGQKETARAYEGYRAVQSFKRH---VNTTDENILGLIAKT 108

Query: 149 MDDGTLISFNSKRLEMIVEE 168
            +D    + N   +    + 
Sbjct: 109 NEDILKENSNKNSIIASTQR 128



 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 91/350 (26%), Gaps = 38/350 (10%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET-------YKNMYDGLSESD 197
           +K++  DG+ + F+  ++E+ + +A      +    + S         ++N     +   
Sbjct: 1   MKVIKRDGSTVPFDRTKIEVAILKAMKNGSGIYIPEIASNISIDAEKHFENFKPTPTIHQ 60

Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
           +E  +        +KE   A    R  ++  +R V TT               L      
Sbjct: 61  IEVYVYERLIHYGQKETARAYEGYR-AVQSFKRHVNTTDENILGLIAKTNEDILKENSNK 119

Query: 258 RYIEEGVKARLLHESMMDFDLVYL-----------ANDLKY-ERDFAFEYLGLQILYDRY 305
             I    +  L+   +                      + + + D+  + +    L +  
Sbjct: 120 NSIIASTQRDLIAGEVSRDIARRKLIPPHIVQAHDDGAIHWHDMDYTLQSIFNCCLINIQ 179

Query: 306 FLHINGSRI-----EMPQAF----------FMRVAMGLALKETEKEKRAVEFYNLLSSFH 350
            +  NG+ I     E P++F            +VA      ++   K    +        
Sbjct: 180 DMLDNGTVINEKMVESPKSFSTACTVTTQIMAQVASNQYGGQSITIKHLAPYLRRTYDKF 239

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410
           F        N               + D   G+     + + L   +G        +   
Sbjct: 240 FKMYMEKYNNEELAKDIAHD---MMMKDLKDGVQTIRYQLSTLMTTNGQAPFATIYLEIE 296

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460
               +             +          Q          YL   H  +E
Sbjct: 297 EGSEYEEEMALICEEMIRQRLEGMKNYKGQQIGEAFPKLVYLLDEHNCLE 346


>gi|37676555|ref|NP_936951.1| anaerobic ribonucleoside triphosphate reductase [Vibrio vulnificus
           YJ016]
 gi|37201097|dbj|BAC96921.1| oxygen-sensitive ribonucleoside-triphosphate reductase [Vibrio
           vulnificus YJ016]
          Length = 706

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAENVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQSTLTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|320158663|ref|YP_004191041.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio vulnificus MO6-24/O]
 gi|319933975|gb|ADV88838.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 706

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAENVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQSTLTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|27366780|ref|NP_762307.1| anaerobic ribonucleoside triphosphate reductase [Vibrio vulnificus
           CMCP6]
 gi|27358347|gb|AAO07297.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio vulnificus
           CMCP6]
          Length = 706

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAENVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI +IQ +VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHIHEIQTRVENELMQGPYKSLARAYIEYRHDRDIAREKQSTLTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|269137781|ref|YP_003294481.1| anaerobic ribonucleoside triphosphate reductase [Edwardsiella tarda
           EIB202]
 gi|267983441|gb|ACY83270.1| anaerobic ribonucleoside triphosphate reductase [Edwardsiella tarda
           EIB202]
 gi|304557838|gb|ADM40502.1| Ribonucleotide reductase of class III large subunit [Edwardsiella
           tarda FL6-60]
          Length = 712

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F+  +I  A+++            ++       +        +       
Sbjct: 5   VIKRDGCQVPFNEQRIKEAVLR-----------AALAADVDDADYCATVARVVAMQMADR 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     D
Sbjct: 54  ERVDINDIQHAVENQLMAGNYKQLARAYIEYRHDRDVAREQRGRLNQD 101


>gi|227486785|ref|ZP_03917101.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235255|gb|EEI85270.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 706

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    F+  KI+ AI KA  +  G            ++    +  + + + +K
Sbjct: 2   LQVIKRDGTKVDFNKDKITIAIEKAMHSPSGI----------YVEGQAAEIASEIEERSK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           +   + I +I+D V   L+   +    + Y  Y+  ++  R   +       +  +  I
Sbjct: 52  NKREISIYEIEDLVYYKLIDRKNPATAKSYESYKSVQAYKREQNTSDDEIIGLLNQTNI 110


>gi|271498937|ref|YP_003331962.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech586]
 gi|270342492|gb|ACZ75257.1| anaerobic ribonucleoside-triphosphate reductase [Dickeya dadantii
           Ech586]
          Length = 712

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD ++I+ A++KA        ++  +   D            + Q  +  
Sbjct: 5   VIKRDGCQVPFDENRINDAVIKA-------ASAAGVDDADY----CATVAAAVAQQMQGK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQ+ VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 54  ARVDIREIQNAVENLLMAGQYKQLARTYIEYRHDRDVARERQGRLNQE 101


>gi|333023287|ref|ZP_08451351.1| putative predicted 76.3Kd protein [Streptomyces sp. Tu6071]
 gi|332743139|gb|EGJ73580.1| putative predicted 76.3Kd protein [Streptomyces sp. Tu6071]
          Length = 631

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 105/598 (17%), Positives = 186/598 (31%), Gaps = 120/598 (20%)

Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLG----NDWTPVRGLGAHIHGTNGKSQGVIPF 427
           +   V D   G   AL++    A   G        D + VR  G+ +    G + G +PF
Sbjct: 127 YAYEVEDSREGWARALEDLIGTAHEPGEGSRDRIYDVSQVRAKGSPLESFGGTASGPLPF 186

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
             +  +    +++         A +E  H  + + +         R     M+ A+    
Sbjct: 187 ALMLVEIGEILSEEEGEPLNGTAAMEIDHA-IAKCIISGGVRRSARMSI--MHWADPRIG 243

Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547
            FM+       WT     E+ +         E   +  ER +            A  +++
Sbjct: 244 EFMRLKKYGGHWTTNISVEIDN---------EFLAQVAERDSW-----------ARFVFQ 283

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607
           ++   +   G P +         S +  V  V+++N C E TL         CNLGS+NL
Sbjct: 284 RITEGMLRNGEPGVWNSSL----SAEGEVDGVYTTNPCGEATLTP----WEPCNLGSVNL 335

Query: 608 LAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666
            A  +     D   L        R L      +     +++K+   +R IG+G  GF   
Sbjct: 336 GAFVSPGGSVDRTGLLQAHALMTRYLLRATFASVSDF-RSRKAISRYRRIGVGHFGFADY 394

Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726
           L    I Y+           +E ++                                   
Sbjct: 395 LAKRGIKYSDAWCNTSVILELEELAH---------------------------------- 420

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKR--VKTIGMRNSNCMAIAPTATIANICGVS-QSID 783
                     A++  +    + L+    +K           IAPT TI+ + GVS + I 
Sbjct: 421 ----------AVDEVAIEYANALRIAVPIKK--------RVIAPTGTISKLAGVSGEGIH 462

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
             + + +++           +  + E +      E    D    +  +  I    D L  
Sbjct: 463 APFADYFIRRIRFSSLEPAEASKIEEYRAAGYLVE---PDKVAANTMVVAIPT-KDPLVD 518

Query: 844 IHATAFEIDPMWLIESASRRQ-------------KWIDQAQSLNLYLD--EPSGKKLDFI 888
           +   A       +IE A   Q              W DQA S    +D  E + + L   
Sbjct: 519 LVQDA------GMIEHAGMLQVTDMLRVQELYQSAWADQAVSYTANVDPKEYTPESLQNC 572

Query: 889 YRQAWLMGLKTTYYLRSRSATSV--EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944
            R  +L  LK T      S      E+ T +  +     +     ++S   +    +C
Sbjct: 573 LRD-YLFHLKGTTVFPEMSFEQPPYERITKEEYERLTRKIGTETSDTSYDEVCASGAC 629


>gi|293380785|ref|ZP_06626830.1| ribonucleotide-diphosphate reductase subunit alpha domain protein
           [Lactobacillus crispatus 214-1]
 gi|290922649|gb|EFD99606.1| ribonucleotide-diphosphate reductase subunit alpha domain protein
           [Lactobacillus crispatus 214-1]
          Length = 141

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 31/140 (22%)

Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786
             + E+  +  +   ++  W+EL  ++K  G+ N+N +A+APT +I+ +   + S+ P  
Sbjct: 30  DKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVV 89

Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH- 845
             +  +         V ++                              +I  D  + + 
Sbjct: 90  APVETRKEADLGRIYVPAY------------------------------KINKDNYEYYE 119

Query: 846 ATAFEIDPMWLIESASRRQK 865
             A+E+ P  +I+  +  QK
Sbjct: 120 KGAYEVGPNAIIDITAAAQK 139


>gi|114048003|ref|YP_738553.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           MR-7]
 gi|113889445|gb|ABI43496.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           MR-7]
          Length = 705

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS----RSIRVQDIIKNLTEQTVTRLLQH 86
           VIKR+G  T FD ++I  A++ A  +V  + A      +  V++ + NL E         
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAE--------- 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +        
Sbjct: 55  ------VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDATSKLNLEIRGL---- 104

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           +   +  L++ N+ +   ++      L  + +K    +++    D ++  +L
Sbjct: 105 VEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYA-KSHILPKDVVAAHEL 155


>gi|113970776|ref|YP_734569.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           MR-4]
 gi|113885460|gb|ABI39512.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella sp.
           MR-4]
          Length = 705

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS----RSIRVQDIIKNLTEQTVTRLLQH 86
           VIKR+G  T FD ++I  A++ A  +V  + A      +  V++ + NL E         
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAE--------- 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +        
Sbjct: 55  ------VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDATSKLNLEIRGL---- 104

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           +   +  L++ N+ +   ++      L  + +K    +++    D ++  +L
Sbjct: 105 VEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYA-KSHILPKDVVAAHEL 155


>gi|217973855|ref|YP_002358606.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS223]
 gi|217498990|gb|ACK47183.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS223]
          Length = 705

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +      +     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAA----TVAACISQSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATSKLNLE 100


>gi|117921044|ref|YP_870236.1| anaerobic ribonucleoside triphosphate reductase [Shewanella sp.
           ANA-3]
 gi|117613376|gb|ABK48830.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella sp.
           ANA-3]
          Length = 705

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 24/172 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS----RSIRVQDIIKNLTEQTVTRLLQH 86
           VIKR+G  T FD ++I  A++ A  +V  + A      +  V++ + NL E         
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDADYAATVAACVRERVANLAE--------- 54

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
                 V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +        
Sbjct: 55  ------VEIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDICRDATSKLNLEIRGL---- 104

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
           +   +  L++ N+ +   ++      L  + +K    +++    D ++  +L
Sbjct: 105 VEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYA-KSHILPKDVVAAHEL 155


>gi|160874804|ref|YP_001554120.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS195]
 gi|160860326|gb|ABX48860.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS195]
 gi|315267042|gb|ADT93895.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS678]
          Length = 705

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +      +     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAA----TVAACISQSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATSKLNLE 100


>gi|153000177|ref|YP_001365858.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS185]
 gi|151364795|gb|ABS07795.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS185]
          Length = 705

 Score = 72.6 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +      +     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAA----TVAACISQSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATSKLNLE 100


>gi|304409768|ref|ZP_07391388.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS183]
 gi|307304124|ref|ZP_07583877.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           BA175]
 gi|304352286|gb|EFM16684.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           OS183]
 gi|306913022|gb|EFN43445.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella baltica
           BA175]
          Length = 705

 Score = 72.6 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +      +     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAA----TVAACISQSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATSKLNLE 100


>gi|212709921|ref|ZP_03318049.1| hypothetical protein PROVALCAL_00971 [Providencia alcalifaciens DSM
           30120]
 gi|212687433|gb|EEB46961.1| hypothetical protein PROVALCAL_00971 [Providencia alcalifaciens DSM
           30120]
          Length = 728

 Score = 72.2 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD  +I         AV    A+  ++  D    +      +L       
Sbjct: 21  VIKRDGCQVNFDLPRIQE-------AVRRAAAAVDVKDDDYCLQVATVVSEQLCHR---- 69

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I +IQD VE  LM   +  + R Y+ YR +R   R  +S    +
Sbjct: 70  EKVDIAEIQDAVENQLMSGPYKDLARAYIEYRHDRDSEREKRSQLTHE 117


>gi|291522482|emb|CBK80775.1| anaerobic ribonucleoside-triphosphate reductase [Coprococcus catus
           GD/7]
          Length = 714

 Score = 72.2 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 16/165 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-NKS 89
           +IKRNG    FD +KI                +       + +   +  V    +    S
Sbjct: 5   IIKRNGTKMDFDGTKIYN--------AVAAANAEVKPEHVLSEAQLQTVVEMASKQILAS 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              + +E+IQD VE ++M    +++ + Y+ YR  R   R + +   +   +     I  
Sbjct: 57  EKDMSVEEIQDIVELAIMSVRGYEVAQHYIRYRHNRELARRSNTTDDNILDL-----IKG 111

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194
            +  +   NS +   +       +  V+S+ +       + + +S
Sbjct: 112 SNKEMNEENSNKDTKMASTQRDYIAGVTSRDLTERVL--LPEKIS 154


>gi|126173897|ref|YP_001050046.1| anaerobic ribonucleoside triphosphate reductase [Shewanella baltica
           OS155]
 gi|125997102|gb|ABN61177.1| ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate
           reductase class III catalytic subunit [Shewanella
           baltica OS155]
          Length = 705

 Score = 72.2 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A+  A  +V  +    +      +     Q+V  L +     
Sbjct: 4   VIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAA----TVAACISQSVATLTE----- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +
Sbjct: 55  --VDIHHLQDAVENLLMEGPYKSLARVYIEYRHDRDVCREATSKLNLE 100


>gi|260777713|ref|ZP_05886606.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605726|gb|EEX32011.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 706

 Score = 72.2 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAEHVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             VHI ++Q  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVHITEVQTLVENELMQGPYKSLARSYIEYRHDRDIAREKQSALTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|3789889|gb|AAC67536.1| UL45 protein [Macacine herpesvirus 3]
          Length = 195

 Score = 72.2 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 78/196 (39%), Gaps = 14/196 (7%)

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT-HR 654
           +  V    ++ L        FD   L + +  AV   +  +D    + +   +S     R
Sbjct: 10  DDDVLCRDNVVLGNTRR--YFDMQVLRTLVTEAVVWGNARLDALIRSGDWPLESAICKMR 67

Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713
           ++ +G+ G  + L  L   Y    + ++ +   E + + A+  SV+L +        F  
Sbjct: 68  SLNIGVTGLHTVLMRLGFTY--FASWDLIERIFENMYYAALRTSVDLCKSGLPPCEWFDR 125

Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773
           +++ +G F  +        R        ++  W+ L+  ++  G+RN+  ++IA     A
Sbjct: 126 TIYKEGKFIFELY------RKPHLSLPVAQ--WETLRTEMQEYGVRNAQLLSIAADEETA 177

Query: 774 NICGVSQSIDPSYQNL 789
            +  V+ SI  +   +
Sbjct: 178 FLWNVTPSIWAARDRI 193


>gi|38637904|ref|NP_942878.1| anaerobic ribonucleoside triphosphate reductase [Ralstonia eutropha
           H16]
 gi|4127320|emb|CAA10041.1| NrdD protein [Ralstonia eutropha H16]
 gi|32527242|gb|AAP85992.1| anaerobic class III ribonucleotide reductase [Ralstonia eutropha
           H16]
          Length = 676

 Score = 72.2 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR G   +F   +I         +   +  + +    D         V R+L H   
Sbjct: 15  EVIKRTGESMAFAIERIQ--------SALRRAGAAAGEFGDAQAVSLAGQVARVLAHRYH 66

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                +E IQD VE  L+ + +    R ++ YR + + +R  +           +
Sbjct: 67  NQTPGVEQIQDVVEQVLIAANYWNTARAFIAYRGQHARLRQDRKALVDVEASINE 121


>gi|260878201|ref|ZP_05890556.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AN-5034]
 gi|308093471|gb|EFO43166.1| anaerobic ribonucleoside-triphosphate reductase [Vibrio
           parahaemolyticus AN-5034]
          Length = 694

 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 18/137 (13%)

Query: 39  TSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDI 98
             F+  +I  A+  A           +      +          +    K    VHI +I
Sbjct: 1   APFNRDRIQAAVEAA-----------AENKDKDVAIYALNVALAVELQLKDHDEVHIHEI 49

Query: 99  QDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKIM----MDD 151
           QD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L ++      D
Sbjct: 50  QDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINENANKD 109

Query: 152 GTLISFNSKRLEMIVEE 168
           G +I      L  IV +
Sbjct: 110 GKVIPTQRDLLAGIVAK 126


>gi|219556408|ref|ZP_03535484.1| ribonucleoside-diphosphate reductase large subunit nrdZ
           [Mycobacterium tuberculosis T17]
          Length = 83

 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914
                Q+ ++ A S  + L    +   +  IY  AW   +K     R  S      S
Sbjct: 1   MQGAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLS 57


>gi|261819761|ref|YP_003257867.1| anaerobic ribonucleoside triphosphate reductase [Pectobacterium
           wasabiae WPP163]
 gi|261603774|gb|ACX86260.1| anaerobic ribonucleoside-triphosphate reductase [Pectobacterium
           wasabiae WPP163]
          Length = 712

 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD  +I         AVE    +  +   D    +         Q  +  
Sbjct: 5   VIKRDGCQVPFDEVRIKE-------AVERAARAADVNDADYCATVACAV----AQQMQDK 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I DIQD VE  LM   + ++ R Y+ YR +R   R        +
Sbjct: 54  SRVDIRDIQDAVENLLMSGNYKQLARTYIEYRHDRDIARERHGRLNQE 101


>gi|152974878|ref|YP_001374395.1| ribonucleoside-diphosphate reductase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023630|gb|ABS21400.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 233

 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 17/224 (7%)

Query: 225 LEKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282
             +L +  E L    ++ +  T      ++ +     I+  ++    +  + ++ L  + 
Sbjct: 17  FYQLHKDKEALEVFMEEARANT------IHFDSVAERIKYMIEHDYYYNVLDEYKLEEIE 70

Query: 283 NDLKY---ERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEK 337
                   E      Y+     Y  Y L  N     +E  +    RVA+          K
Sbjct: 71  AVYDIAYGENFKFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVK 127

Query: 338 RAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396
           +A +F +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K 
Sbjct: 128 KAKQFASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKI 187

Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            GG+  + + +R  G  I G    + GV+P +K+  D+    NQ
Sbjct: 188 GGGVALNLSKLRARGEQIKGIENAASGVVPVMKLLEDSFSYANQ 231


>gi|34557096|ref|NP_906911.1| anaerobic ribonucleoside triphosphate reductase [Wolinella
           succinogenes DSM 1740]
 gi|34482811|emb|CAE09811.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 702

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+G    F P KI  AI KAF +V        +R  D I       +  +   N + 
Sbjct: 5   IFKRDGHAEKFQPYKIEDAIKKAFESVN-------VRYDDRIYT---NVILAIESENLN- 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
               +E IQD++E    ++G+  + + ++ YR      R 
Sbjct: 54  ---SVECIQDRIELEFFKAGYFAVMKSFMNYRFLHKMQRE 90


>gi|15894492|ref|NP_347841.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15024132|gb|AAK79181.1|AE007634_11 Anaerobic ribonucleotide reductase [Clostridium acetobutylicum ATCC
           824]
 gi|325508623|gb|ADZ20259.1| anaerobic ribonucleoside triphosphate reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 699

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 20/129 (15%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD  +I  AI KA  ++E         + DI+  + E  + ++      
Sbjct: 4   KVIKRDGREKDFDILRIEHAIKKAEKSIEVNECWDDDALCDILMKIDETNLKKIE----- 58

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                IE +QD V   L +     + + Y  YR+ER+ +R  +S+          +KI+ 
Sbjct: 59  -----IEKVQDIVIDVLNKYN-KNVAKAYSDYRKERTKIRQDKSNL---------MKIID 103

Query: 150 DDGTLISFN 158
             G     +
Sbjct: 104 KIGVETDRD 112


>gi|323497288|ref|ZP_08102307.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sinaloensis
           DSM 21326]
 gi|323317645|gb|EGA70637.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sinaloensis
           DSM 21326]
          Length = 706

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   +I           +    + +  V   I          +    K  
Sbjct: 5   VIKRDGSRAPFSRDRI-----------QAAVEAAAEHVDKEIAIYALNVALAVELQLKDH 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD-APIAPKLKI-- 147
             V+I +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +   +  +  +  
Sbjct: 54  DEVNIAEIQTLVENELMQGPYKSLARSYIEYRHDRDMAREKQSALTREIEGLIEESNVDL 113

Query: 148 ----MMDDGTLISFNSKRLEMIVEE 168
                  DG +I      L  IV +
Sbjct: 114 INENANKDGKVIPTQRDLLAGIVAK 138


>gi|24374363|ref|NP_718406.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           oneidensis MR-1]
 gi|24348920|gb|AAN55850.1|AE015721_13 anaerobic ribonucleoside-triphosphate reductase [Shewanella
           oneidensis MR-1]
          Length = 705

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I  A++ A  +V  +    +  V   +                + 
Sbjct: 4   VIKRDGCRTPFDETRIRDAVIAAANSVGIEDTDYAATVAACVSA-----------RVANM 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I  +QD VE  LM+  +  + R Y+ YR +R   R A S    +
Sbjct: 53  AEVEIHHLQDVVENLLMEGPYKSLARVYIEYRHDRDICRDATSKLNLE 100


>gi|218886910|ref|YP_002436231.1| anaerobic ribonucleoside triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757864|gb|ACL08763.1| anaerobic ribonucleoside-triphosphate reductase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 636

 Score = 69.9 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 96  EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151
           E +QD VE  LM+S  + + + Y++YRE R  +R  ++     +       +   D
Sbjct: 14  EQVQDTVEQVLMESRLYAVAKRYIIYRETRRTLREQKAAFLDISETIDN-YLTKAD 68


>gi|168334507|ref|ZP_02692673.1| anaerobic ribonucleoside-triphosphate reductase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 707

 Score = 69.9 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKR+G V  FD  KI  AI+KA     G          +I K +  +   + LQ  K
Sbjct: 1   MDVIKRDGQVVQFDEGKIYNAIVKAMRFGSGMVNL------EIAKKIAFEIKEKFLQTPK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
             +I  I  I+ +V   L+ + H    + Y  YR  ++  R  
Sbjct: 55  --VIPTIFQIETEVYLKLIDNNHQITAKSYEGYRAIQAFKRET 95


>gi|213421566|ref|ZP_03354632.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 123

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD----- 878
              DG +  +    + LK  +   +E+      ++     QK+IDQ+ S N   D     
Sbjct: 8   ASKDGILRQVVPDYEHLKDAYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFP 67

Query: 879 --EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
             +   ++L      A+  G+KT YY  +R
Sbjct: 68  SGKVPMQQLLKDLLTAYKFGVKTLYYQNTR 97


>gi|258647549|ref|ZP_05735018.1| ribonucleoside-diphosphate reductase [Prevotella tannerae ATCC
           51259]
 gi|260852335|gb|EEX72204.1| ribonucleoside-diphosphate reductase [Prevotella tannerae ATCC
           51259]
          Length = 775

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 96/509 (18%), Positives = 160/509 (31%), Gaps = 88/509 (17%)

Query: 311 GSRIEM-PQAFFMRVA--MGLALKETEKEKRAVEFYNLLS-SFHFMCSTPTLFNSGTRHP 366
           G+ +E  P+A   R A  +G    +        E ++ L  + H   STP L   G  H 
Sbjct: 40  GNLLETTPEATLRRCAGALGRIEAKYPDPVSEEEIFDFLYPAHHVSLSTPMLAGLGNPHR 99

Query: 367 QLS--SCFLTTVPDDLYGIFG---ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421
           Q      F        Y       A +E   L +    LG+D + +         +   +
Sbjct: 100 QAPVSDAFTIGFGPKAYSYNDLLQADEEEVYLLRRGAALGHDLSRIYPAQLQTEQSEKAT 159

Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
             V+  L+     +          GA+   L   H D E F+D         R T  +N 
Sbjct: 160 PDVVSALERY-ARSRQEAARLTACGAITLSLSIKHPDAEAFIDAGARM----RTTAGVNC 214

Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541
              I D FM  V +   +    P +                                 I 
Sbjct: 215 CLLIDDDFMYAVAKGESYRQQFPVDAESPLLATN------------------------ID 250

Query: 542 AVALWRKMLTMLFETGHPWITFKDPC--NIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599
           A  LW K+L        P I F D       +         +       T+  ++ +++ 
Sbjct: 251 ARRLWEKLLRKAMRNEAPEIHFSDNMLKEQLAGCYAGARPQALAATLNATIPLATYDSSR 310

Query: 600 CNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVID----------------- 637
                +NL ++          FD+      +    R+ D+++D                 
Sbjct: 311 LLT--VNLYSYVEQPFTEQAIFDHKLFRRHLFLVQRLADDLVDIEEEKIDSMLQNIADAE 368

Query: 638 -------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690
                  I     EK ++   T+R  GL L G    L  L +   +P A        + +
Sbjct: 369 VPAEAKMIEQKLWEKVRRHLLTYRPTGLLLTGEAETLAALGLSQDTPAAGAHTRALKQSL 428

Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750
           +     ++V++A+ERGA+     S +D G    +S+ L              R    +L 
Sbjct: 429 AIATCESTVKMAEERGAF-----SDYDAGREAENSLILR------------LRNVAPDLY 471

Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVS 779
            R++ IG RN  C  + P        G +
Sbjct: 472 DRMQKIGRRNLACTIVTPNRPDQQANGTT 500


>gi|326791108|ref|YP_004308929.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
 gi|326541872|gb|ADZ83731.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
          Length = 706

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G   +FD  KI  AI+KA            I  QDI + ++ +  + + +   
Sbjct: 1   MKVIKRDGEAVAFDEGKIYSAIIKAM------TYGSGIVDQDIARKISMEIKSLVSKLPA 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146
           S  I  IE     V   L+++GH    + Y  YR  ++  R   +  +S   +     
Sbjct: 55  SPTIFQIET---YVYLKLIENGHELTAKAYEGYRAIQAFKRETNTTDQSILGLIEMTN 109


>gi|228990451|ref|ZP_04150416.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
 gi|228996552|ref|ZP_04156191.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|229004202|ref|ZP_04162003.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228757063|gb|EEM06307.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock1-4]
 gi|228763184|gb|EEM12092.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides Rock3-17]
 gi|228768977|gb|EEM17575.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           pseudomycoides DSM 12442]
          Length = 221

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 87/219 (39%), Gaps = 7/219 (3%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y+ +      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARANTVHFDSVAERIEYMNKHDYYYNVLDEYKLEEVEEVYNV 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RV++           +A +F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNNQKQYLESYED---RVSIVSLYLGRGDVNKAKQF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 219


>gi|182419956|ref|ZP_02951192.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237665650|ref|ZP_04525638.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376207|gb|EDT73792.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum 5521]
 gi|237658597|gb|EEP56149.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 705

 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 20/279 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + +IKR+  V  F+P KI  AI+K+     G         ++I   ++       +    
Sbjct: 1   MLIIKRDKSVEDFNPDKIKNAILKSMKFGIGNIN------ENIADEISINIYNVFVNEK- 53

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                 +E +++ V   L+++    + + Y  YR  +   R     + +D  I   L   
Sbjct: 54  --TPPTVEQVENLVYYELVKNSFEGVAKAYEGYRAVQEFKRH---KNTTDEGIISLLNST 108

Query: 149 MDDGTLISFNSKRLEMIVEE---ACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204
            +D    + N        +    A    +D++ + +L       +D G+         I 
Sbjct: 109 NEDVLKENSNKDGNIAATQRDLIAGEVSKDIARRKLLPTNIVQAHDEGILHYHDMDYAIQ 168

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
           +                  + +KL  E   +       AT    Q    +Y  + I    
Sbjct: 169 NIHNCCLINLEDMFENGTVINDKLV-ETPKSFSTACTVATQIMAQVSSNQYGGQSITIKH 227

Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
            A  L  S   +   YL      ++D A++    +++ +
Sbjct: 228 LAPFLRVSFDKYHKKYLEK---CDKDLAYDLATERMMEE 263


>gi|153840630|ref|ZP_01993297.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
 gi|149745707|gb|EDM56837.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
          Length = 125

 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 39/146 (26%)

Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842
           +P    + VK++  G    V              +  ++ ++  +DG +           
Sbjct: 1   EPPRGYVSVKASKDGILKQVVPEFTEL-----KNNYELLWNIGSNDGYLH---------- 45

Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895
                                QK++DQA S N   D       +   KKL      A+  
Sbjct: 46  ----------------LVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLLQDLLTAYKF 89

Query: 896 GLKTTYYLRSR-SATSVEKSTLKGVD 920
           G+KT YY  +R  A   +K  ++  D
Sbjct: 90  GVKTLYYHNTRDGAKDDQKDAVQPQD 115


>gi|62996798|gb|AAY24449.1| ribonucleoside-diphosphate reductase large chain precursor [Wiseana
           iridescent virus]
          Length = 330

 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 29/157 (18%)

Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTG---DDRRRTHDMNTANWIPDLFM-------- 490
             R+G+  AYL+  H ++  FL+ R+ +G   D   +  +++ A  IPD FM        
Sbjct: 1   QTRRGSYAAYLDITHPEIISFLNTRRVSGVGGDYNFKLMNIHNAVNIPDEFMRKIWFIST 60

Query: 491 -----------------KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533
                            K +  +  W  FS  ++ D      ++F     +     D   
Sbjct: 61  VTPLLRENKYLKIEETIKEIKNSNKWVEFSELKIEDFTPQNSQKFIKE-MDKWNLFDPHT 119

Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570
            KV   ISA  LW ++L    ETG P++ F D  N  
Sbjct: 120 KKVKETISATELWERILITRAETGEPYLHFIDASNRN 156


>gi|291166947|gb|EFE28993.1| anaerobic ribonucleoside-triphosphate reductase [Filifactor alocis
           ATCC 35896]
          Length = 717

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           G+QVIKR+G    FD  KI  AI KA  +  G           + + +  +      +  
Sbjct: 2   GLQVIKRDGSKVPFDKEKIVVAIKKAMDSSTGIYEDG------LAERIATEI-EEFARSL 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           K  L ++   I+DQV   L+Q  +    R Y  Y+  ++  R 
Sbjct: 55  KRDLTIY--GIEDQVYYKLIQYENPATARAYENYKAVQAFKRK 95



 Score = 41.4 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 56/149 (37%), Gaps = 21/149 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           L+++  DG+ + F+ +++ + +++A              ++   +Y+      + T +  
Sbjct: 3   LQVIKRDGSKVPFDKEKIVVAIKKA-------------MDSSTGIYEDGLAERIATEIEE 49

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264
            +R+L      Y         +++  +++        +A  +       +     I+E V
Sbjct: 50  FARSLKRDLTIYGIE------DQVYYKLIQYENPATARAYENYKAVQAFKRKVNTIDEDV 103

Query: 265 --KARLLHESMMDFDLVYLANDLKYERDF 291
                  + +++D +    A  +  +RD 
Sbjct: 104 VGILNRSNINVLDENSNKDAKIVSTQRDL 132


>gi|23005511|ref|ZP_00048288.1| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 96

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK-GASRSIRVQDIIKNLTEQTVTRLL 84
              ++V+KR+G    FD ++I  A+ KAF  V G   A+   RV +++  +  +   R  
Sbjct: 15  TATLEVLKRDGRRRPFDDARIRAAVTKAFAEVHGDLTATHRRRVAEVVDRVDAEIAARF- 73

Query: 85  QHNKSALIVHIEDIQDQVECSL 106
                   V I +IQ  VE  L
Sbjct: 74  -----DATVKIYEIQGVVEHVL 90


>gi|223983088|ref|ZP_03633286.1| hypothetical protein HOLDEFILI_00566 [Holdemania filiformis DSM
           12042]
 gi|223964944|gb|EEF69258.1| hypothetical protein HOLDEFILI_00566 [Holdemania filiformis DSM
           12042]
          Length = 379

 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 311 GSRIEMP-QAFFMRVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RH 365
              +E+  +    RV   LA  ET   ++EK A  F   L   + + +   LF +G+   
Sbjct: 120 DKPMEIYYEQIARRVGTALAEPETDVAQREKYAGLFTEQLKKLNVIPAGRVLFGAGSGTQ 179

Query: 366 PQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
               +CF+   V D   GI    +E   +    GG+G + + +R   A   G  G+S G 
Sbjct: 180 VTYFNCFVMPFVEDSRGGIAEHRKEVMEIMSRGGGVGTNGSTLRPKHAPAKGVGGRSSGA 239

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-----------DLRKNTGDDR 473
           + +L    +    V QGG R+GA    L  WH D+ EF+            L +N  D++
Sbjct: 240 VSWLNDIANLTNLVEQGGSRRGAQMIMLADWHPDIIEFIISKMQNPRVLKWLSENNKDEQ 299

Query: 474 RRTHDMNTANWIPDLFMKR 492
            R        +IP   ++R
Sbjct: 300 VRELAQRKLKFIPLSRLER 318


>gi|6782386|emb|CAB70098.1| ribonucleotide reductase R1 subunit [Plasmodium yoelii]
          Length = 86

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
            Y  YE +         + + A  LW  +L    ETG P++ +KD CN  S Q+++G + 
Sbjct: 1   LYTKYEEENL-----GKKTVLAQDLWFAILQSQIETGVPYMLYKDACNSESNQKNLGTIK 55

Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHF 611
            SNLC EI   +S +E AVCNL SI L+   
Sbjct: 56  CSNLCCEIIEYTSPDEVAVCNLASIALMQIC 86


>gi|229166285|ref|ZP_04294044.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
 gi|228617230|gb|EEK74296.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           AH621]
          Length = 221

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 7/219 (3%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEGVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A  F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKHF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 219


>gi|169351479|ref|ZP_02868417.1| hypothetical protein CLOSPI_02259 [Clostridium spiroforme DSM 1552]
 gi|169291701|gb|EDS73834.1| hypothetical protein CLOSPI_02259 [Clostridium spiroforme DSM 1552]
          Length = 719

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SKI  AI+KA     G G   +    DI        V     H  
Sbjct: 1   MKVIKRDGQKVDFDASKIENAILKAMK--CGSGIVDTKCAHDIA-------VEIEKWHEF 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               + I  I+ QV   L++ G     + Y  YR+ R   R  
Sbjct: 52  DGNNISIYRIEGQVFEKLIEKGQILTAKAYEGYRKVREFQRET 94


>gi|213621683|ref|ZP_03374466.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 120

 Score = 68.3 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDS 725
           + Y SPEA++  +     I++HA+  S+ LA+ER   ++ F  S +  G +       D 
Sbjct: 1   MAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDW 60

Query: 726 IGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
               A+VR   A   +   +R  W +L+  V   G+ N N  A+ PT +I+ I   + SI
Sbjct: 61  QPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSI 120


>gi|229010747|ref|ZP_04167944.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
 gi|229132248|ref|ZP_04261104.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228651186|gb|EEL07165.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus
           BDRD-ST196]
 gi|228750421|gb|EEM00250.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus
           mycoides DSM 2048]
          Length = 221

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 7/219 (3%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 5   FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 63

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A  F
Sbjct: 64  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKHF 120

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 219


>gi|119944511|ref|YP_942191.1| anaerobic ribonucleoside triphosphate reductase [Psychromonas
           ingrahamii 37]
 gi|119863115|gb|ABM02592.1| anaerobic ribonucleoside-triphosphate reductase [Psychromonas
           ingrahamii 37]
          Length = 704

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F    I+ A+  A   VE  G  +         NL  +   ++      A
Sbjct: 5   VIKRDGAKAVFKSVFIANAVNAA---VEQSGVQKP--------NLGSEISKKVEYLLADA 53

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             V I+ IQ  VE  LM      + R Y+ YR +R   R  +S   ++        +   
Sbjct: 54  KEVSIQAIQHMVESELMDRDPS-VARAYIEYRHDRDIEREKKSLLNNEIQGL----VEQS 108

Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184
           +  L++ N+ +   ++      L  + S+     
Sbjct: 109 NADLLNENANKDSKVIPTQRDLLAGIVSRHYARN 142


>gi|127513377|ref|YP_001094574.1| anaerobic ribonucleoside triphosphate reductase [Shewanella loihica
           PV-4]
 gi|126638672|gb|ABO24315.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella
           loihica PV-4]
          Length = 705

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I               A+ S  + D+      +   ++ Q     
Sbjct: 4   VIKRDGYRTPFDETRIRD---------AVVAAASSAGIDDVAY--ATEVALQVRQSVAEL 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I D+QD VE  LM+  + ++ R Y+ YR +R   R   S    +
Sbjct: 53  EQVDIHDLQDAVENQLMEGPYKQLARVYIEYRHDRDIHRELSSRLNRE 100


>gi|270717088|ref|ZP_06223220.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae HK1212]
 gi|270315576|gb|EFA27785.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus
           influenzae HK1212]
          Length = 131

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 4/135 (2%)

Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680
           L      AVR LD ++D   + +  AK+S+   R++G+G++ +   L    + Y+   A 
Sbjct: 1   LEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVRYSDGSAN 60

Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740
           ++   + E I ++ + AS+ LA+E+GA   F  + + +G+ PID+     +         
Sbjct: 61  DLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLDS----LTQE 116

Query: 741 TSRLPWDELKKRVKT 755
                W+ L+K ++ 
Sbjct: 117 PLHYDWESLRKDIQE 131


>gi|119774412|ref|YP_927152.1| anaerobic ribonucleoside triphosphate reductase [Shewanella
           amazonensis SB2B]
 gi|119766912|gb|ABL99482.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Shewanella
           amazonensis SB2B]
          Length = 705

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   +FD +++  A++ A         +  +  +D    +       + Q ++  
Sbjct: 4   VIKRDGCRAAFDETRLRDAVIAA-------QGAAGVEDKDYAATVASVVAAEVAQRDE-- 54

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I ++QD VE  LM   + ++ R Y+ YR +R   R A S    +
Sbjct: 55  --VAIHELQDAVENCLMSGPYKEVARHYIEYRHDRDVCREATSRLNLE 100


>gi|167754898|ref|ZP_02427025.1| hypothetical protein CLORAM_00402 [Clostridium ramosum DSM 1402]
 gi|167704948|gb|EDS19527.1| hypothetical protein CLORAM_00402 [Clostridium ramosum DSM 1402]
          Length = 719

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SKI +AI+KA            I       ++  +       H  
Sbjct: 1   MKVIKRDGQSVEFDASKIEKAILKAM------QCGSGIVDSKCAHDIAVEIENW---HQF 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           S   + I  I+ QV   L++ G     + Y  YR+ R   R  
Sbjct: 52  SDNNISIYRIEGQVFEKLIEKGQILTAKAYEGYRKVREFQRET 94


>gi|237735373|ref|ZP_04565854.1| anaerobic ribonucleoside-triphosphate reductase [Mollicutes
           bacterium D7]
 gi|229381118|gb|EEO31209.1| anaerobic ribonucleoside-triphosphate reductase [Coprobacillus sp.
           D7]
          Length = 719

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G    FD SKI +AI+KA            I       ++  +       H  
Sbjct: 1   MKVIKRDGQSVEFDASKIEKAILKAM------QCGSGIVDSKCAHDIAVEIENW---HQF 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
           S   + I  I+ QV   L++ G     + Y  YR+ R   R  
Sbjct: 52  SDNNISIYRIEGQVFEKLIEKGQILTAKAYEGYRKVREFQRET 94


>gi|322785763|gb|EFZ12389.1| hypothetical protein SINV_05398 [Solenopsis invicta]
          Length = 209

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 451 YLETWHIDVEEFLDLRKNT----GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506
            ++     +E F  L  +      + R     M    W PDLFMKRV  +    L    E
Sbjct: 5   SIDVILDTLERFAILCHHNGKVGFNARSSFESMCYGLWTPDLFMKRVYDDIS-NLICSHE 63

Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK-MLTMLFETGHPWITFKD 565
              L ++        YE   +           K  A  L R  ++ + FET  P+I FKD
Sbjct: 64  CPGLIEII-----DIYEKKGQVLKD-------KFKARELIRLLIIQIQFETEVPYIVFKD 111

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLAS 623
             N +S  Q++G +  S+ CTE+   SSS E A+CN+ SI  N+  +     FD+ KL  
Sbjct: 112 YYNRKSNYQNLGTIECSSFCTEVVQYSSSGEVAMCNVASITVNMFMNSTKRIFDFYKLKF 171

Query: 624 TIRTAVRVLDNVIDINC 640
              +   + D +I +  
Sbjct: 172 IGVSVQELADALILMRY 188


>gi|163939259|ref|YP_001644143.1| ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861456|gb|ABY42515.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
          Length = 233

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 7/219 (3%)

Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284
             +L ++    +    ++A  + +          Y++E      + +     ++  + N 
Sbjct: 17  FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75

Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342
              E      Y+     Y  Y L  N     +E  +    RVA+           +A  F
Sbjct: 76  AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKHF 132

Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
            +++   ++  +TPT  N+  +R  ++ SCFL  + D L  I   +     L+K  GG+ 
Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440
            + + +R  G  I G +  + GV+P +K+  D+    NQ
Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQ 231


>gi|296273197|ref|YP_003655828.1| anaerobic ribonucleoside-triphosphate reductase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097371|gb|ADG93321.1| anaerobic ribonucleoside-triphosphate reductase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 704

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 14/100 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           + KR+     +   KI  AI KAF + +                  E+    ++      
Sbjct: 5   IFKRDKEKEVYQSYKIKDAIKKAFKSEQINYD--------------ERVFFNVVNKLGLI 50

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
             + +EDIQD +E  L    + ++ + +++YR      R 
Sbjct: 51  EELFVEDIQDIIEKELYNFKYFEVMKSFMVYRHTHKLQRE 90


>gi|303231093|ref|ZP_07317833.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514224|gb|EFL56226.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 716

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD  KI+ AI KA      + +S  +    + + + ++     ++  K
Sbjct: 2   LQVIKRDGTKVPFDKHKIAVAIEKA------EHSSTGLYESGLAERIADEIEAYAIKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE   DQV   L++  +    R Y  Y+  ++  R   +  +    +  +  + 
Sbjct: 56  DMTIYAIE---DQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDEDVIGLLDRSNVS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|303229516|ref|ZP_07316304.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515641|gb|EFL57595.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 716

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD  KI+ AI KA      + +S  +    + + + ++     ++  K
Sbjct: 2   LQVIKRDGTKVPFDKHKIAVAIEKA------EHSSTGLYESGLAERIADEIEAYAIKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE   DQV   L++  +    R Y  Y+  ++  R   +  +    +  +  + 
Sbjct: 56  DMTIYAIE---DQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDEDVIGLLDRSNVS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|308189133|ref|YP_003933264.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea vagans
           C9-1]
 gi|308059643|gb|ADO11815.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea vagans
           C9-1]
          Length = 712

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 15/107 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT--EQTVTRLLQHNK 88
           VIKR+G  T FD  +I               A  +      + +     Q   R+     
Sbjct: 5   VIKRDGCRTGFDAQRIE-------------QAVMAAARAAEVDDAAWCAQVAERVALRLA 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
               V I +IQ  VE +LM   + ++ R Y+ YR +R   R  QS  
Sbjct: 52  DRPEVDISEIQCAVEETLMAGPYPQLARAYIEYRHDRDVARDRQSQL 98


>gi|160946438|ref|ZP_02093647.1| hypothetical protein PEPMIC_00398 [Parvimonas micra ATCC 33270]
 gi|158447554|gb|EDP24549.1| hypothetical protein PEPMIC_00398 [Parvimonas micra ATCC 33270]
          Length = 707

 Score = 66.8 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD +KI+ AI KA  +  G             + L E+  + +     
Sbjct: 2   IKVIKRNGQEVDFDANKIAIAINKAMHSSTGVYE----------EGLAEKIASEIETFAT 51

Query: 89  S-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK--L 145
           +    + I DI+D V  SL++ G+    R Y  Y+  ++  R   +  +S   +  K  L
Sbjct: 52  TIGKKMSIYDIEDHVYYSLIKYGNPATARAYENYKAVQTFKRLKNTTDESILGLLDKTNL 111

Query: 146 KIMMDD 151
            ++ ++
Sbjct: 112 DVINEN 117


>gi|312897931|ref|ZP_07757344.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           micronuciformis F0359]
 gi|310620965|gb|EFQ04512.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           micronuciformis F0359]
          Length = 716

 Score = 66.8 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEG-KGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIKR+G    FD  KI+ AI KA  +  G     ++ R+   I++  ++    +    
Sbjct: 2   LEVIKRDGTKVPFDRKKIAVAIEKAMNSSSGIYEDGQADRIAKEIEDYAKEMHKEMT--- 58

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
                  I  I+DQV   L+Q+ +    R Y  Y+  ++  R  
Sbjct: 59  -------IYAIEDQVYYRLIQANNPATARAYENYKTIQAFKRQT 95


>gi|326791111|ref|YP_004308932.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
 gi|326541875|gb|ADZ83734.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           lentocellum DSM 5427]
          Length = 706

 Score = 66.8 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD-IIKNLTEQTVTRLLQHN 87
           ++V+KR+G   +F+  KI  AI+KA           S  V + I + +  +      + N
Sbjct: 1   MEVVKRDGMSVAFNERKIYEAIIKAM-------KYGSGIVDEGIAEKIANEIKGIFEKSN 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
               I  IE     V   L+++GH    + Y  YR  ++  R  
Sbjct: 54  SKPTIFQIET---YVYLKLIENGHELTAKAYEGYRAIQAFKRET 94


>gi|319645698|ref|ZP_07999929.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
 gi|317392245|gb|EFV73041.1| bsu nrdEB intein containing protein [Bacillus sp. BT1B_CT2]
          Length = 242

 Score = 66.8 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 15/236 (6%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +I+K+  +     R  +           Y        H+++    E     +E       
Sbjct: 18  MIQKDGKFQFEKDREAVHS-----YFVDYVNQNTVFFHDLK----EKLDYLLENDYYEEE 68

Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAM 326
                    +  +       +     ++     Y+ Y L  N     +E  +    RV++
Sbjct: 69  FLSKYTFEQIKEVFKLAYSFKFRFPSFMSAFKFYNDYALKTNDKTKILERYED---RVSV 125

Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFG 385
                     ++A EF +L+    +  STPT  N+   R  ++ SCFL  V D L  I  
Sbjct: 126 VALFFANGDAEKAKEFTSLMMKQEYQPSTPTFLNAGRKRRGEMVSCFLLEVNDSLNDISR 185

Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441
           A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++     +Q 
Sbjct: 186 AVDISMQLSKLGGGVALNLSKIRAKGEPIKKVENATKGVVGVMKLLDNAFRYADQM 241


>gi|170727389|ref|YP_001761415.1| anaerobic ribonucleoside triphosphate reductase [Shewanella woodyi
           ATCC 51908]
 gi|169812736|gb|ACA87320.1| anaerobic ribonucleoside-triphosphate reductase [Shewanella woodyi
           ATCC 51908]
          Length = 705

 Score = 66.8 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G  T FD ++I         AV     S  I        +  +    +       
Sbjct: 4   VIKRDGYRTPFDETRIRD-------AVAAAAISAGIDDNGYATQVATKVADTVANM---- 52

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             V I D+QD VE  LM+  +  + R Y+ YR +R   R   S    +
Sbjct: 53  AEVDIHDLQDVVENQLMEGPYKSLARVYIEYRHDRDLHRETSSRLNRE 100


>gi|317046759|ref|YP_004114407.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. At-9b]
 gi|316948376|gb|ADU67851.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. At-9b]
          Length = 712

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 15/107 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT--EQTVTRLLQHNK 88
           VIKR+G    FD  +I               A ++      + ++T   Q    + Q   
Sbjct: 5   VIKRDGCKVPFDAQRI-------------ASAVQAAARAVQVNDITWCAQVAAEVEQQLV 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
           +   V I DIQ  VE +LM     ++ R Y+ YR +R   R  +   
Sbjct: 52  ARHEVDIRDIQCAVEETLMSGPWPQLARAYIEYRHDRDLAREQRGKL 98


>gi|164686957|ref|ZP_02210985.1| hypothetical protein CLOBAR_00583 [Clostridium bartlettii DSM
           16795]
 gi|164603842|gb|EDQ97307.1| hypothetical protein CLOBAR_00583 [Clostridium bartlettii DSM
           16795]
          Length = 710

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + +IKR+G    FD  KI  AI+KA     G         +DI KN+ ++     LQ 
Sbjct: 4   ANLNIIKRDGSKAEFDKLKIENAILKAMKYGSGVLE------EDIAKNIADEIEKIYLQG 57

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           + S  +  +E+    V   L+        + Y  YR  +S  R 
Sbjct: 58  SPSPTVSKVEE---LVYKELIDHKQELTAKAYEGYRAVQSFKRE 98


>gi|299471070|emb|CBN78929.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 57

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198
           + ++  DG        ++   + + C GL    V S  +  +  + +Y G++  +L
Sbjct: 1   MFVVKRDGRKEDVKFDKITSRINKLCYGLDSRFVDSIKISQKVIQGVYPGVTTIEL 56


>gi|307243878|ref|ZP_07526003.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492700|gb|EFM64728.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 706

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    FD SKI  AI KA     G          DI + +        L+      
Sbjct: 4   IKRDGTTVPFDRSKIRIAIEKAMKNGSGLYHP------DIAEAVARDCENHFLKL---DE 54

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
              I  I+  V   L+   H +  R Y  YR  +   R 
Sbjct: 55  TPTIYKIEGFVYDRLIHYNHSETARAYEGYRAVQQFKRQ 93


>gi|170118628|ref|XP_001890489.1| ribonucleotide reductase, alpha subunit [Laccaria bicolor
           S238N-H82]
 gi|164634518|gb|EDQ98854.1| ribonucleotide reductase, alpha subunit [Laccaria bicolor
           S238N-H82]
          Length = 156

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 32/165 (19%)

Query: 432 NDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
           + T   V+QGG ++ G    Y+E WH D+ EFLDLRKN G +           W+     
Sbjct: 17  SSTGCYVDQGGNQRSGTFTIYIEPWHADIFEFLDLRKNHGMEE-------VCEWVG---- 65

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA----VALW 546
                N  W LF P++   L  +                 R   +  + + A      +W
Sbjct: 66  ----PNRDWPLFCPNKAPGLGKVNS------------AVSRLFTRRRKVVPASPFLPRIW 109

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591
             +L    +TG P++ ++D  N +S Q+++G + SS+LC EIT  
Sbjct: 110 YAILEAQIKTGGPFMVYRDHTNTKSNQKNLGTIKSSDLCMEITKY 154


>gi|77409841|ref|ZP_00786479.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae COH1]
 gi|77171549|gb|EAO74780.1| anaerobic ribonucleoside-triphosphate reductase [Streptococcus
           agalactiae COH1]
          Length = 88

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             ++VIKR+G + SFD  KI  A++KA   V       S  V+  ++ + +  +  +   
Sbjct: 4   SDIKVIKRDGRLVSFDKYKIYTALLKASNKVIKM----SPLVEAKLEMIADHVIAEIYNR 59

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKIT 115
                 + I +IQ+ VE  L+++  + I 
Sbjct: 60  FXDN--IZIYEIQNIVEHKLLEANEYAIA 86


>gi|169838795|ref|ZP_02871983.1| ribonucleotide-diphosphate reductase subunit alpha [candidate
           division TM7 single-cell isolate TM7a]
          Length = 68

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884
           S   IE IPD++K ++ T+F+I P   IE A+R QKW+DQA S N+YL+     +
Sbjct: 2   STKYIEAIPDEIKSVYKTSFQILPYAFIEVAARAQKWVDQAISRNMYLETRDIDE 56


>gi|289423801|ref|ZP_06425596.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           anaerobius 653-L]
 gi|289155840|gb|EFD04510.1| anaerobic ribonucleoside-triphosphate reductase [Peptostreptococcus
           anaerobius 653-L]
          Length = 706

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V+KR+G    FD SKI  A+ KA     G          DI + +        L  ++
Sbjct: 1   MLVMKRDGSKVDFDRSKIRIAVEKAMKNGSGLYHP------DIAEAVARDCENYFLSLDE 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE     V   L+   H +  R Y  YR  +   R     + +D  I   +K  
Sbjct: 55  EPTIYKIEG---YVYDRLIHYNHSETARAYEGYRAVQQFKR---QVNTTDDSILNLMKKS 108

Query: 149 MDDGTLISFNSKRL 162
            +D  + + N   +
Sbjct: 109 NEDVMMENSNKNAI 122


>gi|313892720|ref|ZP_07826301.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442651|gb|EFR61062.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 716

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD  KI+ AI KA      + +S  +  + + + + ++      +  K
Sbjct: 2   LQVIKRDGTKVPFDKHKIALAIEKA------EHSSTGLYEEGLAQRIADEIEEYAQKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE   DQV   L++  +    R Y  Y+  ++  R   +       +  +  + 
Sbjct: 56  DMTIYAIE---DQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNVS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|227499470|ref|ZP_03929581.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
 gi|227218532|gb|EEI83775.1| possible ribonucleoside-triphosphate reductase [Anaerococcus
           tetradius ATCC 35098]
          Length = 711

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 38/200 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +++F+ +KI  AI KA  +  G            + N   +    +     
Sbjct: 7   LKVIKRDGSLSNFEKNKIVVAIEKAMNSPSGV----------FVSNQALEIANEIESEAL 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
           +   + I DI+D+V   L+   +    + Y  Y+  ++  R   +       +  +  I 
Sbjct: 57  NIDKISIYDIEDKVYYKLIDRNNPATAKSYESYKSVQAYKREINTSDDDILGLLNQTNID 116

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D                      ++ +   +++ T +++  G    D+        R 
Sbjct: 117 VMD----------------------ENSNKNPIIASTQRDLIAGEVAKDIAK------RK 148

Query: 209 LIEKEPNYAKVTARFLLEKL 228
           LI  +   A  +A   +  L
Sbjct: 149 LIPLDLVEAHESAAIHIHDL 168


>gi|255657771|ref|ZP_05403180.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
 gi|260849961|gb|EEX69968.1| anaerobic ribonucleoside-triphosphate reductase [Mitsuokella
           multacida DSM 20544]
          Length = 727

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+V+KRNG +  FD SKIS AI+KA   V               +++  Q         K
Sbjct: 2   VKVVKRNGSLADFDKSKISNAILKAM-TVGNTIN----------ESIASQIADDAEHQYK 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               V I DI+  V   L + G     + Y  YR  R   R A +  +    
Sbjct: 51  DKEKVSISDIETFVFNELCKYGQQMTAKAYEGYRSIREFQRKASNSIEKQVK 102


>gi|282883212|ref|ZP_06291811.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297024|gb|EFA89521.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           lacrimalis 315-B]
          Length = 707

 Score = 64.5 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 90/288 (31%), Gaps = 52/288 (18%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKRNG    FD  KI+ AI KA  +  G            +++  E+    + ++  
Sbjct: 2   LTVIKRNGTEVPFDKEKITVAIEKAMNSTTGV----------FVEDQAEKIAREIEEYAN 51

Query: 89  SALIV-HIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           +  +   I DI+ +V   L+   +    R Y  Y+  +   R   +       +  +  I
Sbjct: 52  TKEVPMSIYDIETEVYYKLINYNNPATARAYESYKSVQQYKREQNTTDNEILGLLNETNI 111

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207
            + D                      ++ +   +++ T +++  G    D+        R
Sbjct: 112 DVMD----------------------ENSNKNPIIASTQRDLIAGEVSKDIAK------R 143

Query: 208 TLIEKEPNYAKVTARFLLEKLRREV----------LTTVYKKPQKATHHEMQCLYPEYFC 257
            +I  +   A  +    +  +   +          +  +           ++        
Sbjct: 144 KMIPLDLVEAHESGAIHIHDMDYIIQPIFNCCLVNMKDMLDNGTVVNGKMIETPKSFQVA 203

Query: 258 RYIEEGVKARLLHESM--MDFDLVYLANDLKYERDFAFEYLGLQILYD 303
             +   + A++          D+  L   L+   D       ++ L D
Sbjct: 204 CNVMTQIIAQIASNQYGGQSIDISCLGKYLRRSFDKNLS-SAIETLGD 250


>gi|227545416|ref|ZP_03975465.1| ribonucleotide reductase, alpha subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300908501|ref|ZP_07125964.1| ribonucleoside-triphosphate reductase [Lactobacillus reuteri
           SD2112]
 gi|227184608|gb|EEI64679.1| ribonucleotide reductase, alpha subunit [Lactobacillus reuteri
           CF48-3A]
 gi|300893908|gb|EFK87266.1| ribonucleoside-triphosphate reductase [Lactobacillus reuteri
           SD2112]
          Length = 734

 Score = 64.5 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 91/595 (15%), Positives = 173/595 (29%), Gaps = 103/595 (17%)

Query: 377 PDDLYGIFGALQENAMLA------KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           PD   G   A+ +   L            L  D T +R  GA IHG  G + G  P +++
Sbjct: 222 PDTREGWVLAVAQLIDLHFKNTNQNNVNKLILDMTNIRPRGAKIHGFGGTASGPTPLIEM 281

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D    +N    + G   + ++    D+   +      G+  RR+ ++   +     F+
Sbjct: 282 LQDVNKVLN---AKDGTNLSAVDCT--DICNLIGKAVVAGN-VRRSAELALGSGNNHQFI 335

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                                             + R A    I + +       ++++ 
Sbjct: 336 TMKQDQEK------------------------LQHHRWASNNSISIDKD---FDHFQEVA 368

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LA 609
             + E G P I           +   G   + +   E T      E ++ N    NL   
Sbjct: 369 DSIQENGEPGIVNTSLS-KNYGRIADGYQKNIDGDVEGTNPCG--EISLANGEPCNLFEV 425

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                +     L    R  VR     +  + +  E ++K    +R IG+ + G Q  +  
Sbjct: 426 FPLVAEKQGWDLNDAFRLGVRFA-KRVTFSHYDWEVSRKMIQKNRRIGISMSGIQDWILN 484

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                      +  D  ME +    +                           ID    L
Sbjct: 485 DFGNRVVTGFAKNNDGVMEPVYDQRV---------------------------IDKFNTL 517

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +         ++ L        +K           + P+ T+A + GVS+ +   Y   
Sbjct: 518 YQAVINADKEYSAEL---NCNLSIK--------HTTVKPSGTVAKLAGVSEGMHFHYAGY 566

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE-RIPDDLKKIHATA 848
            ++      F   +  L++ LK+       M  D+            +  +   K  A+A
Sbjct: 567 LIQRIR---FQDTDP-LLDALKECGY---RMEPDIYTDHTICVEFPVKATNAENKNFASA 619

Query: 849 FEIDPMWLIESASRRQK-WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----YYL 903
             +       + +  QK W D A S  +        ++  + +Q +L G+K+T    YY 
Sbjct: 620 GNVSIAEQFATQAFLQKYWSDNAVSCTITFQNKEAAQIPVLLKQ-YLNGIKSTSLLPYY- 677

Query: 904 RSRSATSVEKSTLKGV---DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953
              S     K  +        +           +             ++C    C
Sbjct: 678 -GGSLKQAPKEPITKEFFVKRQAEITGNVIDVFNAQQQDKALDLVDQSDCAGGAC 731


>gi|221309913|ref|ZP_03591760.1| hypothetical protein Bsubs1_11101 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314236|ref|ZP_03596041.1| hypothetical protein BsubsN3_11027 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319158|ref|ZP_03600452.1| hypothetical protein BsubsJ_10953 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323432|ref|ZP_03604726.1| hypothetical protein BsubsS_11072 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 240

 Score = 64.5 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    PN+ K+    +   ++++      K  +    + +  +       +  +     L
Sbjct: 1   MTNTIPNWIKLNNEIM---IQKDGKYQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYL 57

Query: 269 LHESMMDFDL------VYLANDLKYERDFAFEYLGLQI---LYDRYFLHINGS--RIEMP 317
           +     + +         + +  K    + F +         Y+ Y L  N     +E  
Sbjct: 58  IKNDYYEEEFLSKYTFEQIKSIYKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERY 117

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTV 376
           +    RV++          ++AVE  + +    +  +TPT  N+   R  ++ SCFL  V
Sbjct: 118 ED---RVSIVALYCADGDYEKAVEEVHTMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEV 174

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I  A+  +  L+K  GG+  +   +R  G  I      ++GV+  +K+ ++   
Sbjct: 175 GDSLNDISRAIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFR 234

Query: 437 AVNQG 441
             +Q 
Sbjct: 235 YADQM 239


>gi|290968608|ref|ZP_06560146.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781261|gb|EFD93851.1| anaerobic ribonucleoside-triphosphate reductase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 716

 Score = 64.5 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 9/103 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    FD +KI  AI KA  +  G             + + E+     +   K
Sbjct: 2   LEVIKRNGTRVVFDRNKIVVAIEKAMNSSSGVYEPG------QAEKIAEEIEHYAVSLRK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131
              I  IE   D+V   L++  +    R Y  Y+  ++  R  
Sbjct: 56  DMTIYGIE---DKVYEFLLKYNNPATARAYENYKAIQAFKRQT 95


>gi|304396367|ref|ZP_07378248.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. aB]
 gi|304355876|gb|EFM20242.1| anaerobic ribonucleoside-triphosphate reductase [Pantoea sp. aB]
          Length = 712

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT--EQTVTRLLQHNK 88
           VIKR+G  T FD  +I             + A  +      + +L    Q   ++     
Sbjct: 5   VIKRDGCRTGFDAQRI-------------EQAVAAAAQAAEVDDLAWCTQVAEQVALRLA 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
               V I +IQ  VE +LM   + ++ R Y+ YR +R   R  QS  
Sbjct: 52  DRPEVDIREIQCAVEETLMAGPYPQLARAYIEYRHDRDVARDRQSQL 98


>gi|238019525|ref|ZP_04599951.1| hypothetical protein VEIDISOL_01394 [Veillonella dispar ATCC 17748]
 gi|237864224|gb|EEP65514.1| hypothetical protein VEIDISOL_01394 [Veillonella dispar ATCC 17748]
          Length = 716

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + + ++      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQLIADEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE   DQV   L++  +    R Y  Y+  ++  R   +       +  +  + 
Sbjct: 56  DMTIYAIE---DQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNVS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|221316540|ref|ZP_03598345.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 108

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYI---EEGVKARLLHESMMDFDLVYLANDLKYER 289
           L  +YK+  K   ++ +  Y +++   +   E+G+    +  +    +LV   N +  ER
Sbjct: 6   LQELYKRASKNRSYDSKEKYGDFYGLIVTLTEKGLYTPDILANYTREELVKAGNSIVPER 65

Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331
           D  F++ GL  L  RY +   + S  E+PQ  FM  A+ L + 
Sbjct: 66  DELFDFAGLHSLSGRYCVKDFDKSVYELPQERFMIAALHLMMP 108


>gi|153838732|ref|ZP_01991399.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
 gi|149747857|gb|EDM58737.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Vibrio
           parahaemolyticus AQ3810]
          Length = 123

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 837 IPD--DLKKIHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLD 886
           +P+  +LK  +   + I      +      QK++DQA S N   D       +   KKL 
Sbjct: 19  VPEFTELKNNYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLL 78

Query: 887 FIYRQAWLMGLKTTYYLRSR-SATSVEKSTLKGVD 920
                A+  G+KT YY  +R  A   +K  ++  D
Sbjct: 79  QDLLTAYKFGVKTLYYHNTRDGAKDDQKDAVQPQD 113


>gi|282849022|ref|ZP_06258411.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula ATCC 17745]
 gi|294793515|ref|ZP_06758652.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           3_1_44]
 gi|282581297|gb|EFB86691.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula ATCC 17745]
 gi|294455085|gb|EFG23457.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           3_1_44]
          Length = 716

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + +  +      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQRIANEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE   DQV   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 56  DMTIYAIE---DQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNIS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|294791657|ref|ZP_06756805.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           6_1_27]
 gi|294456887|gb|EFG25249.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella sp.
           6_1_27]
          Length = 716

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + +  +      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQRIANEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE   DQV   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 56  DMTIYAIE---DQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNIS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|60416886|emb|CAD71204.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 55

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 865 KWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
           + +DQ  S  L+L +  + + L+ I   A   G+KT YY R++  T 
Sbjct: 1   QHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTKDTTQ 47


>gi|328912187|gb|AEB63783.1| Ribonucleoside-diphosphate reductase nrdEB subunit alpha [Bacillus
           amyloliquefaciens LL3]
          Length = 240

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 18/245 (7%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P + K+    +   ++++      K  +    + +  +       +  +     L
Sbjct: 1   MTNTIPKWIKLNNEIM---IQKDGKFQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYL 57

Query: 269 LHESMMDFDL------VYLANDLKYERDFAFEYLGLQI---LYDRYFLHINGS--RIEMP 317
           +     + +         + +  K    + F +         Y+ Y L  N     +E  
Sbjct: 58  IKNDYYEEEFLSEYTFEQIKSIFKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERY 117

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTV 376
           +    RV++           +A+E  + +    +  +TPT  N+   R  ++ SCFL  V
Sbjct: 118 ED---RVSIVALYCADGDYDKAIEEVHAMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEV 174

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I   +  +  L+K  GG+  +   +R  G  I      ++GV+  +K+ ++   
Sbjct: 175 GDSLNDISRTIDISMQLSKLGGGVALNLNKLRAKGEAIKDVENATKGVVGVMKLLDNAFR 234

Query: 437 AVNQG 441
             +Q 
Sbjct: 235 YADQM 239


>gi|269797749|ref|YP_003311649.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula DSM 2008]
 gi|269094378|gb|ACZ24369.1| anaerobic ribonucleoside-triphosphate reductase [Veillonella
           parvula DSM 2008]
          Length = 716

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    FD +KI+ AI KA      + +S  +  + + + +  +      +  K
Sbjct: 2   LQVIKRDGTKVPFDKNKIALAIEKA------EHSSTGLYEEGLAQRIANEIEEYATKLQK 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
              I  IE   DQV   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 56  DMTIYAIE---DQVYYKLIEYHNPATARAYEGYKAVQAFKRRQNTTDDDVIGLLDRSNIS 112

Query: 149 MDD 151
           + D
Sbjct: 113 VLD 115


>gi|15211874|emb|CAC51106.1| ribonucleotide reductase large subunit [Bacillus sp. BSG40]
          Length = 104

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%)

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    
Sbjct: 1   VGVMKLLDNAFRYADQMGQRQGSGAAYLSVFHPDIIDFLDTKKISADEDVRVKTLSIGVV 60

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           IPD F++   ++  + +F P  V   +  Y
Sbjct: 61  IPDKFIELAREDKDYYMFYPHSVYKEYGQY 90


>gi|257066494|ref|YP_003152750.1| anaerobic ribonucleoside triphosphate reductase [Anaerococcus
           prevotii DSM 20548]
 gi|256798374|gb|ACV29029.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           prevotii DSM 20548]
          Length = 706

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +QVIKR+G    F+  KI  AI KA  +  G            ++N        +     
Sbjct: 2   IQVIKRDGSKAKFEKDKIVIAIEKAMKSASGV----------FVENQAMDIANEIESEAL 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
               + I  I+D V   L+   +    + Y  Y+  ++  R   +       +  +  I
Sbjct: 52  DGDDISIYKIEDMVYYKLINRKNPATAKSYESYKSVQAYKREQNTSDDDILGLLNQTNI 110


>gi|15211861|emb|CAC51099.1| ribonucleotide reductase large subunit [Bacillus sp. M1918]
          Length = 104

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +  +K+ ++     +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    
Sbjct: 1   VGVMKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVV 60

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514
           +PD F++   ++  + +F P  V   +  Y
Sbjct: 61  VPDKFIELAREDKDYYMFYPHSVYKEYGQY 90


>gi|303234116|ref|ZP_07320762.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           BVS033A4]
 gi|302494657|gb|EFL54417.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           BVS033A4]
          Length = 707

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  AI KA  +        S  + +  +NL E+    +  + K
Sbjct: 2   LTVEKRDGRQVEFDAKKIVVAIEKAMNS--------STGIYE--ENLAEKIAKEIEGYAK 51

Query: 89  S-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   ++ I DI+DQV   L+Q  +    R Y  Y+  +   R   +  +S   +  +
Sbjct: 52  TIGKVLSITDIEDQVYYKLIQYNNPATARAYENYKAVQKYKRETNTTDESIIGLLEE 108


>gi|169824875|ref|YP_001692486.1| anaerobic ribonucleoside triphosphate reductase [Finegoldia magna
           ATCC 29328]
 gi|302379554|ref|ZP_07268039.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           ACS-171-V-Col3]
 gi|167831680|dbj|BAG08596.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           ATCC 29328]
 gi|302312461|gb|EFK94457.1| anaerobic ribonucleoside-triphosphate reductase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 707

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  AI KA  +        S  + +  +NL E+    +  + K
Sbjct: 2   LTVEKRDGRQVEFDAKKIVVAIEKAMNS--------STGIYE--ENLAEKIAKEIEGYAK 51

Query: 89  S-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   ++ I DI+DQV   L+Q  +    R Y  Y+  +   R   +  +S   +  +
Sbjct: 52  TIGKVLSITDIEDQVYYKLIQYNNPATARAYENYKAVQKYKRETNTTDESIIGLLEE 108


>gi|15211868|emb|CAC51103.1| ribonucleotide reductase large subunit [Bacillus sp. M1321]
          Length = 104

 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 52/102 (50%)

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           +  +K+ ++     +Q G+R+G+  AYL  +H D+ +FLD +K + D+  R   ++    
Sbjct: 1   VGVMKLLDNAFRYADQMGQRQGSGAAYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVV 60

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526
           +PD F++   ++  + +F P  V   +  Y  E +I     E
Sbjct: 61  VPDKFIELAREDKDYYMFYPHSVYKEYGQYLDEMDINKMYDE 102


>gi|327396279|dbj|BAK13701.1| anaerobic ribonucleoside-triphosphate reductase NrdD [Pantoea
           ananatis AJ13355]
          Length = 712

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  +I+        AV+    + ++        + ++  T+L    +  
Sbjct: 5   VVKRDGCRVGFDSQRIAA-------AVKAAARAANVEDARWCDTVADRVSTQLAHRQE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             V I DIQ  VE +LM   + ++ R Y+ YR +R   R  +SH 
Sbjct: 56  --VDIGDIQYAVEETLMAGPYPQLARTYIEYRHDRDVERERRSHL 98


>gi|328553044|gb|AEB23536.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 240

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 90/245 (36%), Gaps = 18/245 (7%)

Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268
           +    P + K+    +   ++++      K  +    + +  +       +  +     L
Sbjct: 1   MTNTIPKWIKLNNEIM---IQKDGKFQFEKDKEAVHSYFVDYINQNTVFFHDLKEKLDYL 57

Query: 269 LHESMMDFDL------VYLANDLKYERDFAFEYLGLQI---LYDRYFLHINGS--RIEMP 317
           +     + +         + +  K    + F +         Y+ Y L  N     +E  
Sbjct: 58  IKNDYYEEEFLSEYTFEQIKSIFKIAYSYKFRFPSFMSAFKFYNDYALKTNDKTKILERY 117

Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTV 376
           +    RV++           +A+E  + +    +  +TPT  N+   R  ++ SCFL  V
Sbjct: 118 ED---RVSIVALYCADGDYDKAIEEVHAMMKQEYQPATPTFLNAGRKRRGEMVSCFLLEV 174

Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436
            D L  I  A+  +  L+K  GG+  + + +R  G  I      ++GV+  +K+ ++   
Sbjct: 175 GDSLNDISRAIDISMQLSKLGGGVALNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFR 234

Query: 437 AVNQG 441
             +Q 
Sbjct: 235 YADQM 239


>gi|291616027|ref|YP_003518769.1| NrdD [Pantoea ananatis LMG 20103]
 gi|291151057|gb|ADD75641.1| NrdD [Pantoea ananatis LMG 20103]
          Length = 712

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  +I+        AV+    + ++        + ++  T+L    +  
Sbjct: 5   VVKRDGCRVGFDSQRIAA-------AVKAAARAANVEDARWCDTVADRVSTQLAHRQE-- 55

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135
             V I DIQ  VE +LM   + ++ R Y+ YR +R   R  +SH 
Sbjct: 56  --VDIGDIQYTVEETLMAGPYPQLARTYIEYRHDRDVERERRSHL 98


>gi|297587260|ref|ZP_06945905.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Finegoldia magna ATCC 53516]
 gi|297575241|gb|EFH93960.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Finegoldia magna ATCC 53516]
          Length = 707

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 11/117 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + V KR+G    FD  KI  AI KA  +  G              NL E+    +  + K
Sbjct: 2   LTVEKRDGRQVEFDAKKIVVAIEKAMNSSTGIYEP----------NLAEKIANEIEGYAK 51

Query: 89  S-ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
           +   ++ I DI+DQV   L+Q  +    R Y  Y+  +   R   +  +S   +  +
Sbjct: 52  TIGKVLSITDIEDQVYYKLIQYNNPATARAYENYKAVQKYKRETNTTDESIIGLLEE 108


>gi|78217729|gb|ABB37078.1| anaerobic ribonucleoside-triphosphate reductase, putative
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 638

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           + Q  +   +   E +QD +E  LM+S  + + R +++YRE R  +R  Q+     +   
Sbjct: 1   MEQRLEGIDVPCQEQVQDTIEMILMESRLYHVARRFIIYRENRRQLREQQAAYLDISETI 60

Query: 143 P 143
            
Sbjct: 61  D 61


>gi|304439573|ref|ZP_07399478.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371952|gb|EFM25553.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 706

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 47/205 (22%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMA-----VEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + V KRNG    FD SKI  AI KA  +     VEG+  + +  + +  K L ++     
Sbjct: 1   MYVRKRNGDRVPFDKSKIEIAINKAMHSSNGVFVEGQAKAIADEIYEDAKALNKE----- 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
                    + I DI++QV   L+   +    R Y  Y+  ++  R + +       +  
Sbjct: 56  ---------LSIYDIEEQVYYRLINLNNPATARAYESYKSVQAFKRESNTTDDEIIGLLD 106

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +  I + D                      ++ +   +++ T +++  G    D+     
Sbjct: 107 QTNIEVID----------------------ENSNKNAIIASTQRDLIAGEVSKDIAK--- 141

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKL 228
              R +I  +   A  +    +  L
Sbjct: 142 ---RKMIPADLVEAHDSGAIHIHDL 163


>gi|289810082|ref|ZP_06540711.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 98

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 843 KIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWL 894
             +   +E+      ++     QK+IDQ+ S N   D       +   ++L      A+ 
Sbjct: 1   DAYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYK 60

Query: 895 MGLKTTYYLRSR 906
            G+KT YY  +R
Sbjct: 61  FGVKTLYYQNTR 72


>gi|328480219|gb|EGF49143.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 190

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 13/172 (7%)

Query: 508 SDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565
             +   YGK F      + Y++     +IK ++ I A  L  ++  +  E+G+P+I   D
Sbjct: 6   YSVERAYGKPFSYVDITKEYDKMVANPDIKKYK-IKARDLENEISKLQQESGYPYIINID 64

Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLG-SINLLAHFANNQFDY 618
             N  +P    G +  SNLC+EI          + +E  V     S NL +    N    
Sbjct: 65  TANRANPI--EGKIIMSNLCSEIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHS 122

Query: 619 DKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                ++   VR L  V D  N   +   +  NH   +IGLG MG  + L  
Sbjct: 123 RDFGHSVEAMVRALTYVTDHSNIDVVPSVQHGNHLAHSIGLGAMGLHTYLPR 174


>gi|938283|emb|CAA49151.1| ribonucleotide reductase [Saccharomyces cerevisiae]
          Length = 72

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 43/72 (59%)

Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523
           D+RKN G +  R  D+  A WIPDLFMKRV +N  WTLFSP     L D YG EFE  Y 
Sbjct: 1   DIRKNHGKEEIRARDLLPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYT 60

Query: 524 NYERQADRGEIK 535
            YE++     IK
Sbjct: 61  RYEKEGRGKTIK 72


>gi|293380784|ref|ZP_06626829.1| hypothetical protein HMPREF0891_0024 [Lactobacillus crispatus
           214-1]
 gi|290922648|gb|EFD99605.1| hypothetical protein HMPREF0891_0024 [Lactobacillus crispatus
           214-1]
          Length = 78

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918
           K++DQ+ SL L++++  + + L+  Y  A+     + YY+R R       E  T   
Sbjct: 9   KYVDQSISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRVREKVLAGSENLTADE 65


>gi|149068637|gb|EDM18189.1| ribonucleotide reductase M1 (mapped), isoform CRA_a [Rattus
           norvegicus]
          Length = 56

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSES 196
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G++  
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTQ 54


>gi|291561294|emb|CBL40093.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SS3/4]
          Length = 708

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G +  FD  KI  A+ K+  A          +  +I+  +      R  +   
Sbjct: 1   MNVIKKDGTIEQFDGQKIVNAVSKS--AARAMIELDDTQYHEIVSKVMAIVTERFPEQ-- 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
               VH+ D+ + VE  L +    KI + Y  YR
Sbjct: 57  ----VHVADMHNIVEQVLDEVNP-KIAKSYRDYR 85


>gi|213422935|ref|ZP_03355960.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 49

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792
            W++L++ +KT G+RNS   A+ P+ T + I   +  I+P    + +K
Sbjct: 1   DWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 48


>gi|163804060|ref|ZP_02197860.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. AND4]
 gi|159172129|gb|EDP57065.1| anaerobic ribonucleoside triphosphate reductase [Vibrio sp. AND4]
          Length = 540

 Score = 61.8 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP---IAPKLKIM- 148
           VHI +IQD VE  LMQ  +  + R Y+ YR +R   R  QS    +         L ++ 
Sbjct: 1   VHIHEIQDLVENELMQGSYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLIN 60

Query: 149 ---MDDGTLISFNSKRLEMIVEE 168
                DG +I      L  IV +
Sbjct: 61  ENANKDGKVIPTQRDLLAGIVAK 83


>gi|306820567|ref|ZP_07454198.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551384|gb|EFM39344.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 708

 Score = 61.8 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 106/324 (32%), Gaps = 46/324 (14%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  +I RAI KA    +      S ++     ++ ++      +     
Sbjct: 5   VIKRNGKEVDFDKQRIVRAIEKAM---KYGSGIYSYQI---AVDIAKEIYEECEEKQTDK 58

Query: 91  -LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
             I  IE+   +V   L+  G +   R Y  Y+  R+  R   +  K+   +  +   ++
Sbjct: 59  ISIFTIEE---KVFNKLIAHGQNDTARAYEAYKAIRTYQRENNTTDKNIMSLVDRTNEVL 115

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY------DG-LSESDLETAL 202
            +    + N   +    +     L    SK +        +      +G +   D++  L
Sbjct: 116 IN---ENSNKDAILNSTQR--DLLAGEISKDIAMRKLIPTHLVQAHRNGAIHIHDMDYIL 170

Query: 203 -------IFSSRTLIE----------KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245
                  + +   + E          K+P   +V    L + + +        +     H
Sbjct: 171 QPMTNCCLINIGDMFENGTVINKKQIKKPRSFQVACTVLTQIIAQIASNQYGGQSVDLRH 230

Query: 246 --HEMQCLYPEYFCRYIEEGVK---ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
               +   Y +Y+   IEE      A+ +   M   +L      ++Y+ +      G   
Sbjct: 231 LAQFLPISYEKYYNTIIEEVQDEEIAKKIATKMTKRELQSGIQTIQYQVNTLLTTNGQAP 290

Query: 301 LYDRYFLHINGSRIEMPQAFFMRV 324
               +     G   E  +   M +
Sbjct: 291 FVTMFMNIKEGMPYE--KEMAMII 312


>gi|322779112|gb|EFZ09483.1| hypothetical protein SINV_11842 [Solenopsis invicta]
          Length = 92

 Score = 61.8 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352
           ++Y+  + L   Y L ING   E PQ   MRVA+G+   + +K    +E YN LS  +F 
Sbjct: 18  YDYIDFKTLERSYLLKINGKMGERPQHMLMRVAIGIHENDIDKV---IETYNYLSEQYFT 74

Query: 353 CSTPTLFNSGTRHP 366
              PTLFN+ T+  
Sbjct: 75  HPLPTLFNACTKFD 88


>gi|7532417|emb|CAB86984.1| aerobic ribonucleotide reductase class Ib [Acinetobacter
           calcoaceticus]
          Length = 174

 Score = 61.4 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 21/180 (11%)

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEF-----EIAYENYERQADRGEIKVFRKISAVALWR 547
             +N    LFSP    D+  +YGK F        Y          +    +KI+A   ++
Sbjct: 3   AKRNEDMYLFSP---YDVERVYGKPFGDISVSDHYAEMVEDPRITK----KKINARHFFQ 55

Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVC 600
            +  + FE+G+P+I F+D  N  +P +  G ++ SNLC+EI   +S            + 
Sbjct: 56  TVAELQFESGYPYIMFEDTVNNANPVK-TGRINMSNLCSEILQVNSPSSFNDDLSYEEMG 114

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659
           +  S NL +       D      T+  A+R L  V D     ++   +  N    AIGLG
Sbjct: 115 SDISCNLGSMNIALAMDSPDFGGTVEAAIRGLTAVADKTAIDSVPSIRHGNDQSHAIGLG 174


>gi|293375208|ref|ZP_06621494.1| ATP cone domain protein [Turicibacter sanguinis PC909]
 gi|292646188|gb|EFF64212.1| ATP cone domain protein [Turicibacter sanguinis PC909]
          Length = 285

 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD +KI +AI+KA            +  +++ + +  +        N +
Sbjct: 3   EVIKRDGSHVVFDENKIYQAILKAM------KFGSGVVDEELAQKIAHEINLIFDTLNTT 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
             I  IE     V   L+++GH    + Y  YR  +   R   +   S   +       +
Sbjct: 57  PTIFQIET---FVYLKLIENGHELTAKAYEGYRAIQQFKRETNTTDDSILSLIELDNEEV 113

Query: 148 MMDDGTLISFNSKRLEMIVE 167
           M ++       +     ++ 
Sbjct: 114 MNENSNKNPMMASTQRDLIA 133


>gi|325842286|ref|ZP_08167659.1| ATP cone domain protein [Turicibacter sp. HGF1]
 gi|325489659|gb|EGC92020.1| ATP cone domain protein [Turicibacter sp. HGF1]
          Length = 285

 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    FD +KI +AI+KA            +  +++ + +  +        N +
Sbjct: 3   EVIKRDGSHVVFDENKIYQAILKAM------KFGSGVVDEELAQKIAHEINLIFDTLNTT 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK--I 147
             I  IE     V   L+++GH    + Y  YR  +   R   +   S   +       +
Sbjct: 57  PTIFQIET---FVYLKLIENGHELTAKAYEGYRAIQQFKRETNTTDDSILSLIELDNEEV 113

Query: 148 MMDDGTLISFNSKRLEMIVE 167
           M ++       +     ++ 
Sbjct: 114 MNENSNKNPMMASTQRDLIA 133


>gi|213021750|ref|ZP_03336197.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 89

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 33/120 (27%)

Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833
           +   + SI P    + ++    +G       F+ N                         
Sbjct: 1   VNHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN------------------------- 35

Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892
                 +   ++  A++I P  +I++ +   + +DQ  SL L+  +  + + ++     A
Sbjct: 36  ------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 89


>gi|15673894|ref|NP_268069.1| hypothetical protein L173045 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116512848|ref|YP_811755.1| ATP-cone domain-containing protein [Lactococcus lactis subsp.
           cremoris SK11]
 gi|125624940|ref|YP_001033423.1| ribonucleoside-diphosphate reductase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|281492525|ref|YP_003354505.1| hypothetical protein LLKF_2105 [Lactococcus lactis subsp. lactis
           KF147]
 gi|12724949|gb|AAK06010.1|AE006421_3 unknown protein [Lactococcus lactis subsp. lactis Il1403]
 gi|116108502|gb|ABJ73642.1| ATP-cone domain [Lactococcus lactis subsp. cremoris SK11]
 gi|124493748|emb|CAL98737.1| unnamed protein product [Lactococcus lactis subsp. cremoris MG1363]
 gi|281376189|gb|ADA65680.1| Hypothetical protein LLKF_2105 [Lactococcus lactis subsp. lactis
           KF147]
 gi|300071739|gb|ADJ61139.1| hypothetical protein LLNZ_11205 [Lactococcus lactis subsp. cremoris
           NZ9000]
 gi|326407465|gb|ADZ64536.1| ribonucleoside-diphosphate reductase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 105

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG V  +D  +I  A+ KA  A+ GK   + +    I  N+T+     + +   S 
Sbjct: 10  VIKRNGHVVDWDSFRIQTAVFKA--AINGKYKDKPLHANMIANNVTKVVEKVIAEL--SF 65

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS-DVR 129
             + IE IQ+QV   L       + R+++ Y+ +++ + R
Sbjct: 66  EKIEIETIQNQVIKQLNDFD-KDVARDFLAYKTKQNIEQR 104


>gi|242218095|ref|XP_002474841.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725968|gb|EED79933.1| predicted protein [Postia placenta Mad-698-R]
          Length = 158

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 888 IYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           ++   W  GLKT  YYLR+R A    + T+     K          ++  + G
Sbjct: 1   MHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSVLKGAKKNEAAQRNAAKANG 53


>gi|148684654|gb|EDL16601.1| ribonucleotide reductase M1, isoform CRA_a [Mus musculus]
          Length = 88

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202
           + ++  DG        ++   +++ C GL    V    +  +  + +Y G  +  ++  +
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGADDLSIDRIV 60


>gi|58336392|ref|YP_192977.1| ribonucleoside triphosphate reductase [Lactobacillus acidophilus
           NCFM]
 gi|227902554|ref|ZP_04020359.1| ribonucleoside triphosphate reductase [Lactobacillus acidophilus
           ATCC 4796]
 gi|75358220|sp|Q5FMX8|RTPR_LACAC RecName: Full=Adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; Short=RTPR
 gi|58253709|gb|AAV41946.1| ribonucleoside triphosphate reductase [Lactobacillus acidophilus
           NCFM]
 gi|227869643|gb|EEJ77064.1| ribonucleoside triphosphate reductase [Lactobacillus acidophilus
           ATCC 4796]
          Length = 744

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 89/596 (14%), Positives = 167/596 (28%), Gaps = 99/596 (16%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           PD   G   A      +   +           D + +R  GA IHG  G + G +P +++
Sbjct: 226 PDTREGWVLANARLIDMHFNNTNPDQKTKLVLDISDIRPYGAKIHGFGGTASGPMPLVEM 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     N    R G     ++    D+   +  +     + RR+ ++   +     F+
Sbjct: 286 FIDI---NNVINARVGKNLTAVDAT--DICNLIG-KTVVAGNVRRSAELALGSNDDQDFI 339

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
           K                           E  Y +     +   I      S    +  + 
Sbjct: 340 KMKQDK----------------------EKLYHHRWASNNSVAIN-----SKFNNYGPIA 372

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LA 609
             +   G P I   D       +   G     +   E T      E ++ N    NL   
Sbjct: 373 DGILHNGEPGIVNLDLS-RNYGRIVDGYQPGIDDDVEGTNPCG--EISLANGEPCNLFEV 429

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                +     L      A R     +  + +  E ++K    +R IG+ + G Q  L  
Sbjct: 430 FPYTAEKQGWNLKEAFTLATRFA-KRVTFSHYDWEVSRKIIQKNRRIGVSMSGIQDWLLN 488

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                      ++    +          S E  ++          +       I +    
Sbjct: 489 -----------DLGHRVVTGFEDAVDEQSGEKIKKPIYDPKGIEMVDSLYKAVITADKAY 537

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           +E                 +   +K           + P+ T+A + GVS+ +   Y   
Sbjct: 538 SEELG--------------VNPSIK--------HTTVKPSGTVAKLAGVSEGMHFHYAGY 575

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-HATA 848
            ++      F   +  L+  LK+     E    D+   +                  A+A
Sbjct: 576 LIQRIR---FQASDP-LLPALKECGYHTE---PDIYTKNTICVEFPLRAAHADSKNFASA 628

Query: 849 FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----YYL 903
             +       + +  Q  W D A S  +        ++  + RQ +   +K+T    YY 
Sbjct: 629 GTVSIEEQFATQAFLQTYWSDNAVSCTITFQSDENDEIAPLLRQ-YRHTIKSTSLLPYY- 686

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECE--VC 953
              S     K  +     +  A  +TD      +         +    T+CE   C
Sbjct: 687 -GGSLKQAPKEPINKKTYEERAALITDDVEEVFTKQNDDQKGLELVGQTDCEGGAC 741


>gi|73912904|gb|AAZ91396.1| NrdA [Neisseria lactamica]
          Length = 84

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 854 MWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906
              ++     QK++DQA S N          ++ S K++      A+  G+KT YY  +R
Sbjct: 3   EGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYHNTR 62

Query: 907 SATSVEKSTLKGV 919
                 ++ ++  
Sbjct: 63  DGADDTQADIQDD 75


>gi|313888571|ref|ZP_07822237.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845457|gb|EFR32852.1| anaerobic ribonucleoside-triphosphate reductase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 707

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKRNG   +FD  KI  AI KA  +  G      + ++D    + ++        N  
Sbjct: 3   EVIKRNGEKVAFDRGKIVIAIEKAMHSSSG------VYIEDQALEIAKEIEELA---NSK 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
            L + I DI+ +V   L+Q+ +    R Y  Y+  +   R     + +D  I   L    
Sbjct: 54  DLPLSIYDIEGEVYYRLIQNDNPATARAYESYKSVQQYKRE---QNTTDEDILGLLNETN 110

Query: 150 DD 151
           +D
Sbjct: 111 ED 112


>gi|167948816|ref|ZP_02535890.1| hypothetical protein Epers_20772 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 67

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 868 DQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLR 904
           DQA S  + L E  +      IY +AW +GLK     R
Sbjct: 2   DQAISKTINLPERLNFDDFASIYEEAWRLGLKGCTCYR 39


>gi|7532773|emb|CAB87139.1| aerobic ribonucleotide reductase class Ib [Yersinia pestis]
 gi|7532777|emb|CAB87141.1| aerobic ribonucleotide reductase class Ib [Yersinia
           pseudotuberculosis]
          Length = 173

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKM 549
           +    N    LFSP    D+  +YG        + + +      ++ + KI A   ++ +
Sbjct: 1   ELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQIL 57

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602
             + FE+G+P++ F+D  N  +P    G ++ SNLC+EI   ++  E             
Sbjct: 58  AEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLTYRRIGKD 115

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659
            S NL +       D      +I  A+R L  V ++ N  ++   +K N    AIGLG
Sbjct: 116 ISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLG 173


>gi|239993884|ref|ZP_04714408.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas
           macleodii ATCC 27126]
          Length = 140

 Score = 58.7 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 38/137 (27%)

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
            I+P    + +KS+  G    V       L+ +      ++ D+  +DG +         
Sbjct: 1   GIEPPRGFISIKSSKDGVLKQVVPEY-ETLRDQ----YELLWDIPSNDGYLQ-------- 47

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAW 893
                                  QK+IDQ  S N          ++   K L       +
Sbjct: 48  ------------------LVGIMQKFIDQTISANTNYDPSRYEGNKVPMKLLLKDLLTTY 89

Query: 894 LMGLKTTYYLRSRSATS 910
            +G+KT YY  +R   S
Sbjct: 90  KLGVKTLYYHNTRDGAS 106


>gi|325661467|ref|ZP_08150093.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325472416|gb|EGC75628.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 723

 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+     F+  KI+ AI+KA     G               + E     + +  K
Sbjct: 1   MKVIKRDCTEVKFEKRKITNAILKAMKNGSGIIKP----------KIAEAIADEIYEECK 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
               V I  I++ V   L+        + Y  YR  R   R   + +     
Sbjct: 51  EKDEVDISYIEELVYDKLITKKQRLTAKAYEGYRCVREFQRENMNTTDEQIS 102



 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES-DLETALI 203
           +K++  D T + F  +++   + +A      +    +       +Y+   E  +++ + I
Sbjct: 1   MKVIKRDCTEVKFEKRKITNAILKAMKNGSGIIKPKIAEAIADEIYEECKEKDEVDISYI 60

Query: 204 FSSRT--LIEK 212
                  LI K
Sbjct: 61  EELVYDKLITK 71


>gi|269104286|ref|ZP_06156982.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160926|gb|EEZ39423.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 674

 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 73  KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132
           +         +L    +A  V I  IQ+ VE  LM   H  + R Y+ YR +R   R  +
Sbjct: 3   EAYATTVAEAVLAQFVNAEEVEIHAIQNAVETQLMTGPHKAVARAYIEYRHDRDISREKK 62

Query: 133 SHSKSD 138
           S   ++
Sbjct: 63  SRLNNE 68


>gi|325479489|gb|EGC82585.1| anaerobic ribonucleoside-triphosphate reductase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 706

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 38/200 (19%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKRNG    F   KI  AI K+  +  G            + N  E+    +   +K
Sbjct: 2   LRVIKRNGLKDQFYKYKIVNAIEKSMNSPSGV----------FVHNQAEEIAREIENESK 51

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
               + I DI+D+V   L++  +    R Y  Y+  ++  R   +       +  +  I 
Sbjct: 52  DLEEISIYDIEDKVYYKLIERKNPATARAYESYKSVQAYKREQNTSDNDILGLLNQTNID 111

Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208
           + D                      ++ +   +++ T +++  G    D+        R 
Sbjct: 112 VMD----------------------ENSNKNPIIASTQRDLIAGEVAKDIAK------RK 143

Query: 209 LIEKEPNYAKVTARFLLEKL 228
           LI  +   A  +    +  L
Sbjct: 144 LIPADLVEAHESGAIHIHDL 163


>gi|188532516|ref|YP_001906313.1| anaerobic ribonucleoside triphosphate reductase [Erwinia
           tasmaniensis Et1/99]
 gi|188027558|emb|CAO95405.1| Anaerobic ribonucleoside-triphosphate reductase [Erwinia
           tasmaniensis Et1/99]
          Length = 712

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G    FDP++I         A+     + +I   D   +   Q    L      
Sbjct: 4   QVIKRDGCKVVFDPARIEA-------AIRAAAKAANIDDDDYCTSAASQISAALGNR--- 53

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I ++Q  VE  LM   + ++ R Y+ YR +R   R  Q    S+
Sbjct: 54  -QQVDINEVQQAVENLLMAGRYPRLARRYIEYRHDRDVARERQGRLNSE 101


>gi|295424991|ref|ZP_06817700.1| ribonucleoside-triphosphate reductase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065309|gb|EFG56208.1| ribonucleoside-triphosphate reductase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 520

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 87/597 (14%), Positives = 180/597 (30%), Gaps = 99/597 (16%)

Query: 376 VPDDLYGIFGALQENAMLA------KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           +PD   G   A      +       +    L  D + +R  G  IHG  G + G +P ++
Sbjct: 1   MPDTREGWVLANARLIDMHFNATNPEGKKKLVLDISNIRPYGTKIHGFGGTASGPMPLVE 60

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D    +N    + G     ++    D+   +  +     + RR+ ++   +     F
Sbjct: 61  MFFDINKVIN---PKAGEKLTAVDAT--DICNLIG-KTVVAGNVRRSAELALGSNDDQDF 114

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           +K                           +  Y +     +   I      S    +  +
Sbjct: 115 IKMKQDK----------------------DKLYHHRWASNNSVAID-----SKFDNYGPI 147

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-L 608
              +   G P +   +       +   G     +   E T      E ++ N    NL  
Sbjct: 148 ADGILHNGEPGVVNLELS-RNYGRIVDGYQAGIDDNVEGTNPCG--EISLSNGEPCNLFE 204

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +     L      AVR     +  + +  E ++K    +R IG+ + G Q  + 
Sbjct: 205 VFPYVAEKQGWDLKEAFALAVRFA-KRVTFSHYDWEISRKIIQKNRRIGISMSGIQDWIL 263

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                                   H +    E A++    ++ K  ++D  +  + +   
Sbjct: 264 SR--------------------FGHRVVTGWEDAKDPETGAAIKKPIYDPEI--VKTFDG 301

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788
           L +   +   + +  L  +   K              + P+ T+A + GVS+ +   Y  
Sbjct: 302 LYKAVVKADKDYSDVLGCNTSIKH-----------TTVKPSGTVAKLAGVSEGMHFHYAG 350

Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE-RIPDDLKKIHAT 847
             ++      F   +  L+  LK+   + E    D+   +        R  +   K  A+
Sbjct: 351 YMIQRIR---FQASDP-LLPALKECGYYTE---PDIYTKNTICVEFPLRAANADSKQFAS 403

Query: 848 AFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----YY 902
           A  +       + +  Q  W D A S  +   +   K++  +    +   +K+T    YY
Sbjct: 404 AGTVSIGEQFATQAFLQTYWSDNAVSCTVTFQDGESKQIAPL-LHQYRHIIKSTSLLPYY 462

Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECE--VC 953
               S     K  +     +  A  +     +            +    T+CE   C
Sbjct: 463 --GGSLKQAPKEPINKEKYEERAAQIKGDVEAVFMKQNDDEKDLELVGQTDCEGGAC 517


>gi|215923|gb|AAA32531.1| ORF3 [Enterobacteria phage T4]
          Length = 67

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++   G   SF+ +++  ++  A  G   V    +       + DG++  D++T +I 
Sbjct: 4   INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62

Query: 205 SSRT 208
           ++  
Sbjct: 63  AAAN 66


>gi|323448182|gb|EGB04084.1| hypothetical protein AURANDRAFT_67511 [Aureococcus anophagefferens]
          Length = 739

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-----VSSKIVLSETYKNMYDGLSESDLETA 201
           +   D +  + +  ++    ++  +G        V    +  +    MY G+   +L+  
Sbjct: 299 VANRDNSRETVSFDKIAKRFKQLINGDSKKKPLKVDWISLTQKICGEMYSGVHTHELDEL 358

Query: 202 LIFSSRTLIEK 212
              +  +LI +
Sbjct: 359 AAQTCASLITE 369


>gi|7532463|emb|CAB86985.1| aerobic ribonucleotide reductase class Ib [Allochromatium vinosum]
          Length = 173

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 24/181 (13%)

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLT 551
             ++    LFSP +V     +YG+ F     + +      + ++ + +I+A A ++ +  
Sbjct: 3   ARRSEDMYLFSPHDV---GRVYGQPFSEISVSEKYAEMVDDRRIRKSRINARAFFQTLAE 59

Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAV 599
           + FE+G+P+I F+D           G +  SNLC+EI               S       
Sbjct: 60  IQFESGYPYILFEDAATR--ANPAGGRISMSNLCSEILQTNEASLYQEDLSYSRLGTDIS 117

Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGL 658
           CNLGS+N+ A       D     +++  A+R L  V +++    +   ++ N    A+GL
Sbjct: 118 CNLGSLNVAAV-----MDGPDFGASVEAAIRALTAVSNMSAIDCVPSIRRGNDEAHAVGL 172

Query: 659 G 659
           G
Sbjct: 173 G 173


>gi|154149519|ref|YP_001406022.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           hominis ATCC BAA-381]
 gi|153805528|gb|ABS52535.1| anaerobic ribonucleoside-triphosphate reductase [Campylobacter
           hominis ATCC BAA-381]
          Length = 893

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
           + +EDIQD +E  L +SG+ K+ + ++LYR      R 
Sbjct: 217 ISVEDIQDMIEKELFKSGNFKVLKSFMLYRHTHKLQRE 254



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
          +++IKR+G + +F P KI  AI KAF +  
Sbjct: 2  IKIIKRDGSLENFMPFKIQDAIKKAFESEN 31


>gi|167038019|ref|YP_001665597.1| ATP-cone domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116431|ref|YP_004186590.1| ATP-cone domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856853|gb|ABY95261.1| ATP-cone domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929522|gb|ADV80207.1| ATP-cone domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 85

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +  FD  KI R+I  A        A + +   D+  N+       + +  K
Sbjct: 1   MKVIKRDGRLQEFDLDKIIRSIGAA-----SDDAGKPLNTSDL-HNIARDIEKSIKKLGK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREY 118
             +     +I+  V  +L ++G   + + Y
Sbjct: 55  EQISFD--EIRTIVIDALEKNGFKDVAKAY 82



 Score = 41.8 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNM----YDGLSES 196
           +K++  DG L  F+  ++   +  A       L       +  +  K++     + +S  
Sbjct: 1   MKVIKRDGRLQEFDLDKIIRSIGAASDDAGKPLNTSDLHNIARDIEKSIKKLGKEQISFD 60

Query: 197 DLETALIFS 205
           ++ T +I +
Sbjct: 61  EIRTIVIDA 69


>gi|26553948|ref|NP_757882.1| anaerobic ribonucleoside-triphosphate reductase [Mycoplasma
           penetrans HF-2]
 gi|26453956|dbj|BAC44286.1| anaerobic ribonucleoside-triphosphate reductase [Mycoplasma
           penetrans HF-2]
          Length = 713

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IK++    SFDP+KI  A+ K+  AV          +  I+ N+ ++            
Sbjct: 11  IIKKDNTKQSFDPNKIKTAVSKS--AVRVMVNFTEQDLDKIVNNVLDKI------RQSEY 62

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             +HI  + + VE SL +  +  + + Y  YR
Sbjct: 63  SEIHISLMHNLVEKSL-EELYPAVAKSYKDYR 93


>gi|329850491|ref|ZP_08265336.1| B12-dependent ribonucleoside diphosphate reductase [Asticcacaulis
           biprosthecum C19]
 gi|328840806|gb|EGF90377.1| B12-dependent ribonucleoside diphosphate reductase [Asticcacaulis
           biprosthecum C19]
          Length = 909

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 83/261 (31%), Gaps = 3/261 (1%)

Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662
            +IN+   F ++ F  +     I      LD    +            H  R + L L G
Sbjct: 297 AAINVARFFQDDGFQAEAFVDAITLWAWALDIEASVAFTGTYTDSLKLHAERPVALTLAG 356

Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722
              AL  L +  +   A + A      +   A+ AS  LAQ    + SFK          
Sbjct: 357 LTDALMSLGLSLSDSAAGDYASHLFALLEASAVHASAVLAQRLSPHDSFKADKPAAIDRL 416

Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782
              +  +  ++    +   S        K  K  G+RN    A+     +A   G +   
Sbjct: 417 SSKLYQITAMKGHGDLKGRSLELIQSGLKLAKLTGLRNVQSTALFADDELALRLGATLGD 476

Query: 783 DPSYQNLYVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERI-PDD 840
               +   V     G F  V    ++  L+      + +   L  H  S+ +   I    
Sbjct: 477 QAIREVRGVIEGDDGTFVTVLKAPVIKGLQALAADWDEVRGHLLGHR-SLYDAPHINTAS 535

Query: 841 LKKIHATAFEIDPMWLIESAS 861
           LK    + FE+  +  +   +
Sbjct: 536 LKSKGLSEFEVSQLQDVLMTA 556


>gi|289577907|ref|YP_003476534.1| ATP-cone domain protein [Thermoanaerobacter italicus Ab9]
 gi|297544184|ref|YP_003676486.1| ATP-cone domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527620|gb|ADD01972.1| ATP-cone domain protein [Thermoanaerobacter italicus Ab9]
 gi|296841959|gb|ADH60475.1| ATP-cone domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 85

 Score = 56.4 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +  FD  KI R+I  A        A + +   D+  N+       + +  K
Sbjct: 1   MKVIKRDGRLQEFDLDKIVRSIGAA-----SDDAGKPLNTSDL-HNIARDIEKSIKKLGK 54

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREY 118
             +     +I+  V  +L ++G   + + Y
Sbjct: 55  EQISFD--EIRTIVIDTLEKNGFKDVAKAY 82



 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNM----YDGLSES 196
           +K++  DG L  F+  ++   +  A       L       +  +  K++     + +S  
Sbjct: 1   MKVIKRDGRLQEFDLDKIVRSIGAASDDAGKPLNTSDLHNIARDIEKSIKKLGKEQISFD 60

Query: 197 DLETALIFS 205
           ++ T +I +
Sbjct: 61  EIRTIVIDT 69


>gi|14270378|emb|CAC39437.1| UL39 protein [Suid herpesvirus 1]
          Length = 367

 Score = 56.4 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 302 YDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYNLLSSF 349
            + Y   +   R E    FF+R            +A+ L   +   E     ++  L++ 
Sbjct: 198 EEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFD-AYFRALATQ 256

Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLAKYSGGLGNDWTPV 407
             + +TP +  +G     L+SC+L           +     E A +    GG+G      
Sbjct: 257 AIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLSLQSF 316

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463
                    +   ++G++  LK  +    A+N   +R   VC Y+E WH DV   L
Sbjct: 317 NRT-----PSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVL 367


>gi|325955753|ref|YP_004286363.1| ribonucleoside triphosphate reductase [Lactobacillus acidophilus
           30SC]
 gi|325332318|gb|ADZ06226.1| ribonucleoside triphosphate reductase [Lactobacillus acidophilus
           30SC]
          Length = 744

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 86/596 (14%), Positives = 165/596 (27%), Gaps = 99/596 (16%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           PD   G   A      +               D T +R  GA IHG  G + G +P +++
Sbjct: 226 PDTREGWVLANARLIDMHFNPTNPDRKTKLVLDITDIRPYGAKIHGFGGTASGPMPLVEM 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     N    R G     ++    D+   +      G+ RR       ++       
Sbjct: 286 FIDI---NNVINARAGKNLTAVDAT--DICNLIGKTVVAGNVRRSAELALGSS------- 333

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                             D  D    + +     + R A    + +  K +    +  + 
Sbjct: 334 ------------------DDQDFIKMKQDKKKLYHHRWASNNSVAINSKFNN---YGPIA 372

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LA 609
             +   G P I   D       +   G     +   E T      E ++ N    NL   
Sbjct: 373 DGILHNGEPGIVNLDLS-RNYGRIVDGYQPGIDDDVEGTNPCG--EISLANGEPCNLFEV 429

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                +     L      A R     +  + +  E ++K    +R IG+ + G Q  L  
Sbjct: 430 FPYIAEMQGWDLKEAFALATRFA-KRVTFSHYDWEVSRKIIQKNRRIGISMSGIQDWLLN 488

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                      ++    +        + + E  ++    S     +       +D+    
Sbjct: 489 -----------DLGHRVVTGFEDAVDAETGEKIKKPIYDSQAVERVDGLYKAVVDADKAY 537

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           ++        +                         + P+ T+A + GVS+ +   Y   
Sbjct: 538 SKELGTHPSIK----------------------HTTVKPSGTVAKLAGVSEGMHFHYAGY 575

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-HATA 848
            ++      F   +  L+  L++     E    D+   +                  A+A
Sbjct: 576 LIQRIR---FQASDP-LLPALRECGYHTE---PDIYTKNTICVEFPLRAAHADSKNFASA 628

Query: 849 FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----YYL 903
             +       + +  Q  W D A S  +        ++  +    +   +K+T    YY 
Sbjct: 629 GTVSIAEQFATQAFLQTYWSDNAVSCTITFQSDESDEIAPL-LHQYRHTIKSTSLLPYY- 686

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECE--VC 953
              S     K  +     K  A  +TD      +         +    T+CE   C
Sbjct: 687 -GGSLKQAPKEPIDKKTYKERAALITDDVEEVFAKQNDDQKGLEIVGQTDCEGGAC 741


>gi|315037275|ref|YP_004030843.1| ribonucleoside triphosphate reductase [Lactobacillus amylovorus GRL
           1112]
 gi|312275408|gb|ADQ58048.1| ribonucleoside triphosphate reductase [Lactobacillus amylovorus GRL
           1112]
          Length = 744

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 86/596 (14%), Positives = 165/596 (27%), Gaps = 99/596 (16%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           PD   G   A      +               D T +R  GA IHG  G + G +P +++
Sbjct: 226 PDTREGWVLANARLIDMHFNPTNPDRKTKLVLDITDIRPYGAKIHGFGGTASGPMPLVEM 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     N    R G     ++    D+   +      G+ RR       ++       
Sbjct: 286 FIDI---NNVINARAGKNLTAVDAT--DICNLIGKTVVAGNVRRSAELALGSS------- 333

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                             D  D    + +     + R A    + +  K +    +  + 
Sbjct: 334 ------------------DDQDFIKMKQDKKKLYHHRWASNNSVAINSKFNN---YGPIA 372

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LA 609
             +   G P I   D       +   G     +   E T      E ++ N    NL   
Sbjct: 373 DGILHNGEPGIVNLDLS-RNYGRIVDGYQPGIDDDVEGTNPCG--EISLANGEPCNLFEV 429

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                +     L      A R     +  + +  E ++K    +R IG+ + G Q  L  
Sbjct: 430 FPYIAEMQGWDLKEAFALATRFA-KRVTFSHYDWEVSRKIIQKNRRIGISMSGIQDWLLN 488

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                      ++    +        + + E  ++    S     +       +D+    
Sbjct: 489 -----------DLGHRVVTGFEDAVDAETGEKIKKPIYDSQAVERVDGLYKAVVDADKAY 537

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           ++        +                         + P+ T+A + GVS+ +   Y   
Sbjct: 538 SKELGTHPSIK----------------------HTTVKPSGTVAKLAGVSEGMHFHYAGY 575

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-HATA 848
            ++      F   +  L+  L++     E    D+   +                  A+A
Sbjct: 576 LIQRIR---FQASDP-LLPALRECGYHTE---PDIYTKNTICVEFPLRAAHADSKNFASA 628

Query: 849 FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----YYL 903
             +       + +  Q  W D A S  +        ++  +    +   +K+T    YY 
Sbjct: 629 GTVSIAEQFATQAFLQTYWSDNAVSCTITFQSDESDEIAPL-LHQYRHTIKSTSLLPYY- 686

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECE--VC 953
              S     K  +     K  A  +TD      +         +    T+CE   C
Sbjct: 687 -GGSLKQAPKEPIDKKTYKERAALITDDVEEVFAKQNDDQKGLEIVGQTDCEGGAC 741


>gi|327182580|gb|AEA31027.1| ribonucleoside triphosphate reductase [Lactobacillus amylovorus GRL
           1118]
          Length = 744

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 86/596 (14%), Positives = 165/596 (27%), Gaps = 99/596 (16%)

Query: 377 PDDLYGIFGALQENAMLAKYSGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           PD   G   A      +               D T +R  GA IHG  G + G +P +++
Sbjct: 226 PDTREGWVLANARLIDMHFNPTNPDRKTKLVLDITDIRPYGAKIHGFGGTASGPMPLVEM 285

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D     N    R G     ++    D+   +      G+ RR       ++       
Sbjct: 286 FIDI---NNVINARAGKNLTAVDAT--DICNLIGKTVVAGNVRRSAELALGSS------- 333

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
                             D  D    + +     + R A    + +  K +    +  + 
Sbjct: 334 ------------------DDQDFIKMKQDKKKLYHHRWASNNSVAINSKFNN---YGPIA 372

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LA 609
             +   G P I   D       +   G     +   E T      E ++ N    NL   
Sbjct: 373 DGILHNGEPGIVNLDLS-RNYGRIVDGYQPGIDDDVEGTNPCG--EISLANGEPCNLFEV 429

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                +     L      A R     +  + +  E ++K    +R IG+ + G Q  L  
Sbjct: 430 FPYIAEMQGWDLKEAFALATRFA-KRVTFSHYDWEVSRKIIQKNRRIGISMSGIQDWLLN 488

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                      ++    +        + + E  ++    S     +       +D+    
Sbjct: 489 -----------DLGHRVVTGFEDAVDAETGEKIKKPIYDSQAVERVDGLYKAVVDADKAY 537

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
           ++        +                         + P+ T+A + GVS+ +   Y   
Sbjct: 538 SKELGTHPSIK----------------------HTTVKPSGTVAKLAGVSEGMHFHYAGY 575

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-HATA 848
            ++      F   +  L+  L++     E    D+   +                  A+A
Sbjct: 576 LIQRIR---FQASDP-LLPALRECGYHTE---PDIYTKNTICVEFPLRAAHADSKNFASA 628

Query: 849 FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----YYL 903
             +       + +  Q  W D A S  +        ++  +    +   +K+T    YY 
Sbjct: 629 GTVSIAEQFATQAFLQTYWSDNAVSCTITFQSDESDEIAPL-LHQYRHTIKSTSLLPYY- 686

Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECE--VC 953
              S     K  +     K  A  +TD      +         +    T+CE   C
Sbjct: 687 -GGSLKQAPKEPIDKKTYKERAALITDDVEEVFAKQNDDQKGLEIVGQTDCEGGAC 741


>gi|320038061|gb|EFW19997.1| ribonucleotide reductase large subunit Rnr1 [Coccidioides posadasii
           str. Silveira]
          Length = 154

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 888 IYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939
           ++   W +GLKT  YYLR+ +A++  + T+     K+    V   +      G
Sbjct: 1   MHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNVARSSVVGKKRG 53


>gi|260101819|ref|ZP_05752056.1| adenosylcobalamin-dependent ribonucleoside-triphosphate reductase
           [Lactobacillus helveticus DSM 20075]
 gi|260084373|gb|EEW68493.1| adenosylcobalamin-dependent ribonucleoside-triphosphate reductase
           [Lactobacillus helveticus DSM 20075]
          Length = 744

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 86/598 (14%), Positives = 163/598 (27%), Gaps = 101/598 (16%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           +PD   G   A      L               D + +R  GA IHG  G + G +P ++
Sbjct: 225 IPDTREGWVLANARLIDLHFNDTNPDQKTKLVLDISDIRPYGAKIHGFGGTASGPMPLVE 284

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +  D     N   +R G     ++    D+   +  +     + RR+ ++   +     F
Sbjct: 285 MFFDI---NNVINERVGQKLTAVDAT--DICNLIG-KTVVAGNVRRSAELALGSSDNQDF 338

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           +K                           E  Y +     +   I      S    +  +
Sbjct: 339 IKMKQDK----------------------EKLYHHRWASNNSVAIN-----SKFNNYGPI 371

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-L 608
              +   G P I   D       +   G     +   E T      E ++ N    NL  
Sbjct: 372 ADGIMHNGEPGIVNLDLS-RNYGRIADGYQAGIDDDVEGTNPCG--EISLANGEPCNLFE 428

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +     L      AVR     +  + +  E ++     +R IG+ + G Q  L 
Sbjct: 429 VFPYIAEQQGWDLKEAFSLAVR-YTKRVTFSHYDWEVSRNIIQKNRRIGVSMSGIQDWLL 487

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                       ++    +                          +         D  G+
Sbjct: 488 N-----------DLGHRVVTGFKDATDK----------------ETGASIKKPIYDPQGI 520

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS-NCMAIAPTATIANICGVSQSIDPSYQ 787
                   A+    +   +EL       G+  S     + P+ T+A + GVS+ +   Y 
Sbjct: 521 KMVDGLYHAVIAADKAYSEEL-------GVNPSIKHTTVKPSGTVAKLAGVSEGMHFHYA 573

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-HA 846
              ++      F   +  L+  L++     E    D+   +     I            A
Sbjct: 574 GYLIQRIR---FQASDP-LLPALRKCGYHTE---PDIYTKNTICVEIPLRAAHADSKNFA 626

Query: 847 TAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----Y 901
           +A  +       + +  Q  W D A S  +        ++  +    +   +K+T    Y
Sbjct: 627 SAGTVSIAEQFATQAFLQTYWSDNAVSCTVTFQANESNQIAPL-LHQYRHTIKSTSLLPY 685

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS----CTSDTECE--VC 953
           Y    S     K  +     +     +T                      ++C    C
Sbjct: 686 Y--GGSLKQAPKEPINKKTYEDRVAMITGDVKEVFENQNKDQKGLELVDQSDCASGAC 741


>gi|207093469|ref|ZP_03241256.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 54

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 23/54 (42%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
            + ++  +G +   +  +++   ++A   L+ VS   +  +      D ++  +
Sbjct: 1   MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEE 54


>gi|226331038|ref|ZP_03806556.1| hypothetical protein PROPEN_04968 [Proteus penneri ATCC 35198]
 gi|225201833|gb|EEG84187.1| hypothetical protein PROPEN_04968 [Proteus penneri ATCC 35198]
          Length = 96

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQ 812
            T G+ N N  AI PT +I+ I   + SI P    + ++     G       F+ NE +Q
Sbjct: 1   MTHGIYNQNLQAIPPTGSISYINHSTSSIHPIAAPIEIRKEGKIGRVYYPAPFMTNENRQ 60

Query: 813 RDLWDEAMISDLKYHD 828
                  + ++  Y  
Sbjct: 61  YYQDAYEIGAEKNYRY 76


>gi|167821507|ref|ZP_02453187.1| hypothetical protein Bpse9_40693 [Burkholderia pseudomallei 91]
          Length = 252

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 59/188 (31%), Gaps = 9/188 (4%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS- 503
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL   
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRHT 241

Query: 504 --PDEVSD 509
             P +   
Sbjct: 242 APPRDAPG 249


>gi|270265098|ref|ZP_06193361.1| anaerobic ribonucleoside-triphosphate reductase [Serratia odorifera
           4Rx13]
 gi|270041032|gb|EFA14133.1| anaerobic ribonucleoside-triphosphate reductase [Serratia odorifera
           4Rx13]
          Length = 671

 Score = 54.9 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             + Q       V I DIQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 3   RVVAQQMAQQPRVDIHDIQQAVENQLMAGEYKQLARAYIEYRHDRDVARELRGRLNQE 60


>gi|262189796|ref|ZP_06048142.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae CT 5369-93]
 gi|262034322|gb|EEY52716.1| ribonucleotide reductase of class III (anaerobic) large subunit
           [Vibrio cholerae CT 5369-93]
          Length = 665

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 93  VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
           VHI +IQ  VE  LMQ  +  + R Y+ YR +R   R  QS    +  
Sbjct: 15  VHITEIQTLVENELMQGPYKALARSYIEYRHDRDVAREKQSKLTKEIE 62


>gi|15679535|ref|NP_276652.1| anaerobic ribonucleoside-triphosphate reductase
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622659|gb|AAB86013.1| anaerobic ribonucleoside-triphosphate reductase
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 776

 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 93/671 (13%), Positives = 178/671 (26%), Gaps = 98/671 (14%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++ ++G    F+ ++L   +    + L   +S+ V SE  +++Y+G++  +++  +  S 
Sbjct: 24  VLKNNGVREKFSHEKLVKSLLNLGASL--WTSENVASEVARSVYNGITTKEIKILVYDSL 81

Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266
           R + E+  +      R  +   R ++ T   KK +     E                  A
Sbjct: 82  RKVDEELADRYLAANRLRVRTSRDKIETFDQKKIEDNLIRETGASEDVA-------REIA 134

Query: 267 RLLHESMMDFDLVYLANDLKYE-RDFAFEYLGLQILYDRYFL----------------HI 309
             +   +   ++ YL   +  E  +      GL+ L  RY                    
Sbjct: 135 TEVWRELKKLNVEYLTAPMIREVVNTKLIEHGLETLRKRYTRLGIPVYNITNLIENGSRD 194

Query: 310 NGSRIEMPQAFFMRVAMGLALKET----------------EKEKRAVEFYNLLSSFHFMC 353
           N + I  P+     VA     + T                +     +EF+          
Sbjct: 195 NANMIHNPETVHKYVADEALKQYTLLHILPSRLADAHMSGDIHIHDLEFFAARPLNCLQH 254

Query: 354 STPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAK--YSGGLGNDWTPVRGL 410
                   G R             P  L  +     E  + ++   SGG       V   
Sbjct: 255 DLRLFIRHGLRVDGTGDHTSVAGPPKHLETLMNHAGEIMLASQQNMSGGQAMSLWNVFVA 314

Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470
                 +  K +  +  + + N       +G  +       LE     V EFL+      
Sbjct: 315 PFASGLSYEKIKQAVQ-MFIFNLNMAYAARGS-QVPFTSINLEFG---VPEFLE------ 363

Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530
           D+         A    D              F+   +    D     F     +  R+  
Sbjct: 364 DEPAYGPRGEYAGVYGDF---AEEARLLTRAFTEVLLEGDADGKPHLFPNTIYSLRRETF 420

Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590
           RGE               +  +  + G  +        +   +  +              
Sbjct: 421 RGEF--------DEELSLVHELASKYGTAYFINM----LADYRGKMANYMGCRTSLADNW 468

Query: 591 NSSSEETAVCNLGS-----INLLAHFANNQFD---YDKLASTIRTAV------RVLDNVI 636
            +   E      G+     +NL      ++ D   ++ L   I  AV      R      
Sbjct: 469 -TGDWEKDCLRTGNLAYITLNLPRIAYQSRDDDELFEYLDEYIDMAVEVLRIRRSQAQRC 527

Query: 637 DINCHTIEKAKKSNHTHR-------AIGLGLMGFQSAL-HLLHIPYASPEAVEIADESME 688
             + H +    +     R        +  G  G    L + L     SPEA       +E
Sbjct: 528 LDDYHLLPFLSQEIDGERYYRIENATMSFGFTGLNEMLEYHLGAGIQSPEANRFGLRVIE 587

Query: 689 FISFHA----ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744
            I+  A           +  +    S                 +L           +S  
Sbjct: 588 HINERAAELKKETGWRWSVLQTPAESTAHRFAMLDHEHYPEEAVLQGTEGAYYYTNSSHT 647

Query: 745 PWDELKKRVKT 755
           P +     V+ 
Sbjct: 648 PVNAEVDLVEK 658


>gi|167725382|ref|ZP_02408618.1| hypothetical protein BpseD_40561 [Burkholderia pseudomallei DM98]
          Length = 245

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 6/179 (3%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL  
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH 240


>gi|167899957|ref|ZP_02487358.1| hypothetical protein Bpse7_39910 [Burkholderia pseudomallei 7894]
          Length = 242

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 6/179 (3%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 62  PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 121

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 122 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 181

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503
           + A  A L   H D+  F   +        R   +  A    D FM+ V Q+  WTL  
Sbjct: 182 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATDAFMQAVEQDLPWTLRH 240


>gi|300813764|ref|ZP_07094075.1| hypothetical protein HMPREF9131_1513 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
 gi|300512129|gb|EFK39318.1| hypothetical protein HMPREF9131_1513 [Peptoniphilus sp. oral
          taxon 836 str. F0141]
          Length = 46

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67
          + VIKRNG    FD  KI+ AI KA  +  G        
Sbjct: 2  LTVIKRNGTEVPFDKEKITIAIEKAMNSTTGVFVEDQAE 40


>gi|218128619|ref|ZP_03457423.1| hypothetical protein BACEGG_00189 [Bacteroides eggerthii DSM 20697]
 gi|217989221|gb|EEC55535.1| hypothetical protein BACEGG_00189 [Bacteroides eggerthii DSM 20697]
          Length = 233

 Score = 53.7 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%)

Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943
           ++ +Y +AW  G K     R  S + V  ST      +L          +   +     
Sbjct: 6   VNRLYVEAWKSGCKGCTVYRDGSRSGVLISTKSDKKNELPPCKPPTVVETRPKVLEADV 64


>gi|302793899|ref|XP_002978714.1| hypothetical protein SELMODRAFT_27935 [Selaginella moellendorffii]
 gi|300153523|gb|EFJ20161.1| hypothetical protein SELMODRAFT_27935 [Selaginella moellendorffii]
          Length = 90

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546
           DLFM+RV  N+  +LF P++   L D +G+EFE  Y  Y++     E +  R +S   LW
Sbjct: 1   DLFMERVKSNSDSSLFCPNKAPGLADCWGEEFESLYTRYKK-----EGRAKRSLSGQKLW 55

Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
             +L    ETG+    F    + +S QQ++G +  SNLC
Sbjct: 56  FAILETQMETGN----FLRCEDRKSNQQNLGTIKCSNLC 90


>gi|327197952|ref|YP_004306269.1| putative ribonucleotide diphosphate reductase alpha subunit
           [Lactococcus phage 949]
 gi|306009272|gb|ADM73667.1| putative ribonucleotide diphosphate reductase alpha subunit
           [Lactococcus phage 949]
          Length = 499

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312
            E     ++       + +      +  L   L  ++     ++G    Y +Y +H    
Sbjct: 59  REKLDYLVKHKYIKGEVLDKYTFKFIKKLFKTLYDKKFRFTTFMGAYKFYTQYAMHTTDG 118

Query: 313 --RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLS 369
              +E  +    R+A    +     E+ A+   N + S  +  +TPT  N+G        
Sbjct: 119 KSILERYED---RIAFNALVMADGDEQLALNIANEMISQTYQPATPTFSNAGKLRGGNAV 175

Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401
           SCFL  + D++  I  ++     L+K  GG+ 
Sbjct: 176 SCFLLNIEDNMTSIGRSVNSVLQLSKMGGGVA 207


>gi|328480215|gb|EGF49141.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 83

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 16/65 (24%)

Query: 857 IESASRRQKWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTT 900
           ++  +  Q+ +DQ  ++ L++                   + + L+ +   A   G+K+ 
Sbjct: 1   MDVYAAAQQHVDQGMAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSI 60

Query: 901 YYLRS 905
           YY+R+
Sbjct: 61  YYIRT 65


>gi|47195913|emb|CAF89003.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 120

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 32/101 (31%)

Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSS------------------------------ 178
           DG   + +  ++   V++ C GL    V                                
Sbjct: 1   DGRQEAVSFDKITSRVQKLCYGLNSEFVDPVSTNRQCGPVGQTGPLCVLVPVTRLLWLCQ 60

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
             +  +  + +Y G++ ++L+T    ++ TL  K P+YA +
Sbjct: 61  AQITLKVIQGLYSGVTTAELDTLAAETAATLTTKHPDYAIL 101


>gi|154502201|ref|ZP_02039261.1| hypothetical protein RUMGNA_00011 [Ruminococcus gnavus ATCC 29149]
 gi|153797080|gb|EDN79500.1| hypothetical protein RUMGNA_00011 [Ruminococcus gnavus ATCC 29149]
          Length = 719

 Score = 52.2 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 98/296 (33%), Gaps = 37/296 (12%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIK++G +  ++  KI  AI K+               QD    +  + +  + + + 
Sbjct: 1   MKVIKKDGTLEEYNEQKIINAIDKS------AQRENFTFSQDEYGMICNRVLNEVDEEDF 54

Query: 89  SALIVHIEDIQDQVECSLM----QSGH-HKITREYVL---------YREERSDVRAAQSH 134
               V +  I + VE +L+    + G+ ++  R Y L         Y E+   +R     
Sbjct: 55  ENDEVPVGFIHNIVEKTLLDLFPKVGYQYQQYRNYKLDFVHMMDTVY-EKSQSIRYIGDK 113

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----Y 190
           S ++      L            +S+  +                I + +    +     
Sbjct: 114 SNAN--TDSALVATKRSLIYNELSSELYKKFFLTLDEKQAMKDGFIYIHDRSARLDTFNC 171

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVT----ARFLLEKLRREVLTTVYKKPQKATHH 246
           D +   ++          +   EPNY           +L    ++       +  K    
Sbjct: 172 DLMRVGEIMKNGFE-MGNIWYNEPNYLDTAFDVMGDIVLSTAAQQYGGFTVPEVDKILSP 230

Query: 247 EMQCLYPEYFCRYIE--EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
             +  Y +Y+  +I+    V+A    +   D +   +      +RD+   + G+++
Sbjct: 231 YAEKSYKKYYKEFIDIANEVEASGFTDLYNDAEKFAVNK---VKRDYEQGWQGIEM 283


>gi|304313898|ref|YP_003849045.1| anaerobic ribonucleotide-triphosphate reductase
           [Methanothermobacter marburgensis str. Marburg]
 gi|302587357|gb|ADL57732.1| anaerobic ribonucleotide-triphosphate reductase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 771

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 83/674 (12%), Positives = 170/674 (25%), Gaps = 104/674 (15%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206
           ++ ++G    F+ ++L   +    + L   +S+ V SE  +++Y+G++  ++   L++ +
Sbjct: 19  VLKNNGIREKFSHEKLVKSLLNLGASL--WTSENVASEVARSVYNGITTKEI-KILVYDA 75

Query: 207 RTLIEKEPNYAKVTA---RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
              +++E     + A   R    + R E       +                        
Sbjct: 76  LKKVDEELADRYLAANRMRVRTSRDRIETFDQKKIEDNLVREAGASEEVAREI------- 128

Query: 264 VKARLLHESMMDFDLVYLANDLKYE-RDFAFEYLGLQILYDRYFL--------------- 307
             A  +   +   ++ YL   +  E  +      GL+ L  RY                 
Sbjct: 129 --ASDVWRELKKLNVEYLTAPMIREVVNTKLIEHGLETLRRRYTRLGIPVYNITNLIENG 186

Query: 308 -HINGSRIEMPQAFFMRVAMGLALKE----------------TEKEKRAVEFYNLLSSFH 350
              N + I  P+     VA     +                  +     +EF+       
Sbjct: 187 SRDNANMIHNPETVHKYVADEALKQYALLHILPSRLADAHMSGDIHIHDLEFFAARPLNC 246

Query: 351 FMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAK--YSGGLGNDWTPV 407
                      G R             P  L  +     E  + ++   SGG       V
Sbjct: 247 LQHDLRLFIRHGLRVDGTGDHTSVAGPPKHLETLMNHAGEIMLASQQNMSGGQAMSLWNV 306

Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467
                       K +  +  + + N       +G  +       LE     V EFL+   
Sbjct: 307 FVAPFASGLPYEKIKQAVQ-MFIFNLNMAYAARGS-QVPFTSINLEFG---VPEFLE--- 358

Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527
              D+              D              F+   +    D     F        R
Sbjct: 359 ---DEPAYGPRGEHVGVYGDF---AEEARLLTRAFTEVLLEGDADGKPHLFPNTIYTIRR 412

Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587
           +  +GE               +  +  + G  +        +   +  +           
Sbjct: 413 ETLKGEF--------HEELGLVHELASKYGTAYFINM----LADYRGEMANYMGCRTSLA 460

Query: 588 ITLNSSSEETAVCNLGS-----INLLAHFANNQFD---YDKLASTIRTAV------RVLD 633
               + + E      G+     +NL      ++ D   ++ L   I  AV      R   
Sbjct: 461 DNW-TGNWEEDCLRTGNLAYITLNLPRVAYQSRDDDELFEYLDEYIDMAVEVLRIRREQA 519

Query: 634 NVIDINCHTIEKAKKSNHTHR-------AIGLGLMGFQSAL-HLLHIPYASPEAVEI--- 682
                + H +    +     R        +  G  G    L + L      PE+      
Sbjct: 520 LHCLDDYHLLPFLSQEIDGERYYRIENATMSFGFTGLNEMLEYHLGSGIEDPESNRFGLR 579

Query: 683 -ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741
             +   E  +          +  +    S                 +L   +       +
Sbjct: 580 VVEHINERAAELKKETGWRWSVLQTPAESTAHRFAMLDHEHYPEEAVLQGTKGAYYYTNS 639

Query: 742 SRLPWDELKKRVKT 755
           S  P +     V+ 
Sbjct: 640 SHTPVNAEVDIVQK 653


>gi|157265425|ref|YP_001467983.1| ribonucleoside-triphosphate reductase [Thermus phage P74-26]
 gi|156905320|gb|ABU96963.1| ribonucleoside-triphosphate reductase [Thermus phage P74-26]
          Length = 661

 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 126/448 (28%), Gaps = 106/448 (23%)

Query: 373 LTTVPDDLYGIFGALQENAMLA--KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
              V D   G   A++    L   ++   L  +   VR LG+ +    G + G  P L+ 
Sbjct: 166 TLVVGDSREGWAEAVKLFLELLGDRHVELLHVNLNSVRPLGSPLKRFGGFASGPGP-LED 224

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
               A  +  G K +G    + +   +DV   +  R       RR+  ++  +W    F+
Sbjct: 225 FFLNAAFILGGTKPEG----WTDVKALDVANLIG-RMVVAGGTRRSAQISLGDWDSKNFI 279

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +   W   +P      + +        Y   +R                       
Sbjct: 280 AA--KTGNWWATAPWRAQSNNSVL------FYAKPDR----------------DTLLAFF 315

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
             + + G P        N ++  +        N C+EI L        VCNL ++ L  H
Sbjct: 316 DAVLQYGEPGF-----VNAQTALKRREDFRGVNPCSEILL----RNKGVCNLTTVVLPNH 366

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT-HRAIGLGLMGFQSALHL 669
             N + DY  L  T+R   R    +       +    +      R IG+   G    +HL
Sbjct: 367 VRNGKVDYALLEDTLRLLTRHAIRITTAQFPDVLSEWQRVQDEDRLIGVSFTGLDDFIHL 426

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
             +   +     +A       S     A    A+                          
Sbjct: 427 TGLDNDA-----LAKVLAWMRSVVNDEAKRYSAELGLPKPK------------------- 462

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                                               + P  T++ + GVS  + P+Y   
Sbjct: 463 --------------------------------LATTVKPEGTLSLLAGVSSGVHPAYAPY 490

Query: 790 YVKSNMSGDFTVVNSF--LVNELKQRDL 815
           Y++         +N    +   L+   +
Sbjct: 491 YIRRV------RINKHDSVAQALRALGM 512


>gi|289809784|ref|ZP_06540413.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 669

 Score = 51.4 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
             +     +   V I +IQ  VE  LM   + ++ R Y+ YR +R   R  +     +
Sbjct: 1   EVVSSQMNARSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQE 58


>gi|146341345|ref|YP_001206393.1| transcriptional regulator NrdR [Bradyrhizobium sp. ORS278]
 gi|189030513|sp|A4YW96|NRDR_BRASO RecName: Full=Transcriptional repressor NrdR
 gi|146194151|emb|CAL78172.1| conserved hypothetical protein with ATP cone domain [Bradyrhizobium
           sp. ORS278]
          Length = 161

 Score = 51.4 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+      S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKL-------MRSVQ-----ISLRKRSVDPERVEKMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  +S     +  E I + V    M+       +   YV    +YR  R
Sbjct: 93  RELESGGESEVSSEAIGEIV----MEHLRDLDDVA--YVRFASVYRNFR 135



 Score = 37.9 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV---LSETYKNMYDG----LSES 196
           +L ++  +G  + F+  +L   V+ +    + V  + V   +S   + +  G    +S  
Sbjct: 48  ELTVIKRNGRRVPFDRDKLMRSVQISLRK-RSVDPERVEKMVSAIVRELESGGESEVSSE 106

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
            +   ++   R L   +  Y +  +   + +  RE         + +   E   L P
Sbjct: 107 AIGEIVMEHLRDL--DDVAYVRFAS---VYRNFREAKDFEAVLGELSAEDETPRLAP 158


>gi|330844781|ref|XP_003294292.1| hypothetical protein DICPUDRAFT_51421 [Dictyostelium purpureum]
 gi|325075275|gb|EGC29184.1| hypothetical protein DICPUDRAFT_51421 [Dictyostelium purpureum]
          Length = 733

 Score = 51.4 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 97/697 (13%), Positives = 190/697 (27%), Gaps = 154/697 (22%)

Query: 268 LLHESMMDFDLVYLANDLKYERD----FAFEYLGLQILYDRYFL-HINGSRIEMPQAFFM 322
            L     + D       ++  R     F F  LG  +    Y     + +  E       
Sbjct: 56  FLTNKGKNTDFKLNDQFIEEYRKKKAKFGFGILGEIVYRRTYSRVKPDTNTNEKWYETVE 115

Query: 323 RV-------------AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR----- 364
           RV             + GL+  +T+ +  A E Y  +    F+     L+  G+      
Sbjct: 116 RVVNGTYNMQKRWIESHGLSWNDTKAQSSAQEMYRKIFEMKFLPPGRGLWAMGSPITEKK 175

Query: 365 --HPQLSSC---FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419
             +  L++C       + D+    F  L + +ML     G+G  +         I G + 
Sbjct: 176 GLYAALNNCAFVSTMDMKDNPTKPFIFLMDASML-----GVGVGFDCRGANSFIIKGQSK 230

Query: 420 KSQGVIPFL-------------------------KVAN-DTAVAVNQGGKRKGAVCAYLE 453
           ++ G   F+                            +        +  K  G VC+  +
Sbjct: 231 RNCGDEMFIIPDSREGWVQSVQILLDSYFLNKPKPQFDYSKIRKKGEPIKGFGGVCSGYQ 290

Query: 454 TW---HIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507
                H D+   LD       +  +     ++     +       V Q+A      P+  
Sbjct: 291 PLQELHYDISNILDESTGKPISITNIVDLMNLIGKCVVSG----SVRQSAEIAFGDPNST 346

Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567
             ++         A  + +         VF +I     + K+   + E G P   F +  
Sbjct: 347 EYINLKNY----KANPHRQAFGWTSNNSVFAEI--GMEYDKICERIIENGEPGFAFLENM 400

Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627
              S       +  S    + +            L S  L         ++D L   + T
Sbjct: 401 KSYS------RMIPSEKDFKDSKALGGNPCLEQTLESYELCCLVETFPNNHDSLEEYLST 454

Query: 628 A--VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685
                +    + +         +    +R IG  + G    +                  
Sbjct: 455 LKYAFLYSKTVTLGATQWPDTNRVLLRNRRIGCSMSGIAQFIQEKG-------------- 500

Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745
                    ++   E   +   Y +   +++                             
Sbjct: 501 ---------LNELREWCLKGYDYVTELDNIYS---------------------------D 524

Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805
           W  + K +K          +I P+ T++ + G +  +       Y++           S 
Sbjct: 525 WLAIPKSIKK--------TSIKPSGTVSLLAGATPGMHYPISEYYIRRIR----IHKGSD 572

Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865
           L+ ELK      E  + ++         +  IP    K   +A  I     +  A+  QK
Sbjct: 573 LLPELKHAGYHIEEALDNVNNM------VVEIPIHSGKNIRSANSISIWEQLSLAAFLQK 626

Query: 866 -WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTT 900
            W D   S  +  +  + G +L       +   LK  
Sbjct: 627 HWADNQVSSTVSFNPATEGPQLKHALNY-FQYQLKGV 662


>gi|148255997|ref|YP_001240582.1| transcriptional regulator NrdR [Bradyrhizobium sp. BTAi1]
 gi|189030512|sp|A5EKI2|NRDR_BRASB RecName: Full=Transcriptional repressor NrdR
 gi|146408170|gb|ABQ36676.1| hypothetical protein BBta_4648 [Bradyrhizobium sp. BTAi1]
          Length = 161

 Score = 51.4 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+      S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKL-------MRSVQ-----ISLRKRSVDPERVEKMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  +S     +  E I + V    M+       +   YV    +YR  R
Sbjct: 93  RELESGGESEVSSEAIGEIV----MEHLRDLDDVA--YVRFASVYRNFR 135



 Score = 37.9 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV---LSETYKNMYDG----LSES 196
           +L ++  +G  + F+  +L   V+ +    + V  + V   +S   + +  G    +S  
Sbjct: 48  ELTVIKRNGRRVPFDRDKLMRSVQISLRK-RSVDPERVEKMVSAIVRELESGGESEVSSE 106

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
            +   ++   R L   +  Y +  +   + +  RE         + +   E   L P
Sbjct: 107 AIGEIVMEHLRDL--DDVAYVRFAS---VYRNFREAKDFEAVLGELSAEDEAPRLAP 158


>gi|323465614|gb|ADX69301.1| ribonucleotide reductase, alpha subunit [Lactobacillus helveticus
           H10]
          Length = 744

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 84/598 (14%), Positives = 163/598 (27%), Gaps = 101/598 (16%)

Query: 376 VPDDLYGIFGALQENAMLAKYSGGLG------NDWTPVRGLGAHIHGTNGKSQGVIPFLK 429
           +PD   G   A      L               D + +R  GA IHG  G + G +P ++
Sbjct: 225 IPDTREGWVLANARLIDLHFNDTNPDQKTKLVLDISDIRPYGAKIHGFGGTASGPMPLVE 284

Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489
           +        N   +R G     ++    D+   +  +     + RR+ ++   +     F
Sbjct: 285 MF---LDINNVINERVGQKLTAVDAT--DICNLIG-KTVVAGNVRRSAELALGSSDNQDF 338

Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549
           +K                           E  Y +     +   I      S    +  +
Sbjct: 339 IKMKQDK----------------------EKLYHHRWASNNSVAIN-----SKFNNYGPI 371

Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-L 608
              +   G P I   D       +   G     +   E T      E ++ N    NL  
Sbjct: 372 ADGIMHNGEPGIVNLDLS-RNYGRIADGYQAGIDDDVEGTNPCG--EISLANGEPCNLFE 428

Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668
                 +     L      A R     +  + +  E ++     +R IG+ + G Q  L 
Sbjct: 429 VFPYIAEQQGWDLKEAFSLAAR-YTKRVTFSHYDWEVSRNIIQKNRRIGVSMSGIQDWLL 487

Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728
                                +    ++   +   E       K     QG+  +D +  
Sbjct: 488 N-------------------DLGHRVVTGFKDATDEETGAPIKKPIYDPQGIKMVDGLYH 528

Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS-NCMAIAPTATIANICGVSQSIDPSYQ 787
                D+                  + +G+  S     + P+ T+A + GVS+ +   Y 
Sbjct: 529 AVIAADKAYS---------------EELGVNPSIKHTTVKPSGTVAKLAGVSEGMHFHYA 573

Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI-HA 846
              ++      F   +  L+  L++     E    D+   +                  A
Sbjct: 574 GYLIQRIR---FQASDP-LLPALRKCGYHTE---PDIYTKNTICVEFPLRAAHADSKNFA 626

Query: 847 TAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT----Y 901
           +A  +       + +  Q  W D A S  +        ++  +    +   +K+T    Y
Sbjct: 627 SAGTVSIAEQFATQAFLQTYWSDNAVSCTVTFQANESNQIAPL-LHQYRHTIKSTSLLPY 685

Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS----CTSDTECE--VC 953
           Y    S     K  +     +     +T                      ++C    C
Sbjct: 686 Y--GGSLKQAPKEPINKKTYEDRVAMITGDVKEVFENQNKDQKGLELVDQSDCASGAC 741


>gi|60416876|emb|CAD71198.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 62

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+   YL  +H D+ +FLD +K + D+  R   ++    +PD
Sbjct: 1   MKLLDNAFRYADQMGQRQGSGAVYLSVFHPDITDFLDTKKISADEDVRVKTLSIGVVVPD 60

Query: 488 LF 489
            F
Sbjct: 61  KF 62


>gi|220925142|ref|YP_002500444.1| transcriptional regulator NrdR [Methylobacterium nodulans ORS 2060]
 gi|254768019|sp|B8ILE2|NRDR_METNO RecName: Full=Transcriptional repressor NrdR
 gi|219949749|gb|ACL60141.1| ATP-cone domain protein [Methylobacterium nodulans ORS 2060]
          Length = 193

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 31/129 (24%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+D +        P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPSEDASAIRRRRICPDCGGRFTTFERVQLRELTVVKRSGRKVPFDRDKLQRSIDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI--EDIQDQVECSLMQSG 110
              +VE      S R++ ++  +T        +  +S+    +  E I + V   L   G
Sbjct: 77  --RSVE------SDRIERLVSGIT--------RQLESSGEPEVTSEAIGELVMEGL--KG 118

Query: 111 HHKITREYV 119
              +   YV
Sbjct: 119 LDDVA--YV 125


>gi|60416866|emb|CAD71192.1| ribonucleoside-diphosphate reductase large subunit [Bacillus
           subtilis]
          Length = 62

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           +K+ ++     +Q G+R+G+  AYL  +H D+ EFLD +K + D+  R   ++    +PD
Sbjct: 1   MKLLDNAFRYADQMGQRQGSGAAYLSVFHPDITEFLDTKKISADEDVRVKTLSIGVVVPD 60

Query: 488 LF 489
            F
Sbjct: 61  KF 62


>gi|257053405|ref|YP_003131238.1| transcriptional regulator NrdR [Halorhabdus utahensis DSM 12940]
 gi|256692168|gb|ACV12505.1| ATP-cone domain protein [Halorhabdus utahensis DSM 12940]
          Length = 160

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + +QV KR+G +  FD  K+   I +A   VE +        +  +  + +     L + 
Sbjct: 47  ESLQVKKRDGAIEPFDREKLRAGIERA---VEKRPV-----DEQAVTAIVDAIHDALTER 98

Query: 87  NKSALIVHIEDIQDQVECSL 106
                IV    I D V   L
Sbjct: 99  --EGRIVTTTQIGDLVSEHL 116



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVLSETYKNMYDG----LSES 196
             L++   DG +  F+ ++L   +E A     + + +   ++   +  + +     ++ +
Sbjct: 47  ESLQVKKRDGAIEPFDREKLRAGIERAVEKRPVDEQAVTAIVDAIHDALTEREGRIVTTT 106

Query: 197 DLETALIFSSRTL 209
            +   +    R  
Sbjct: 107 QIGDLVSEHLRER 119


>gi|255284353|ref|ZP_05348908.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
 gi|255265095|gb|EET58300.1| anaerobic ribonucleoside-triphosphate reductase [Bryantella
           formatexigens DSM 14469]
          Length = 710

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           + VIK++G    F+  KI  A+ K A  A+              I+ L E    R  +  
Sbjct: 1   MYVIKKDGTEEEFNVEKIVVAVNKSAARALYKFT-------PQEIEELCEFATRRAQEMG 53

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           K    + I+++ + VE +L +     + + Y  YR
Sbjct: 54  KEG--ITIQEMHNIVESAL-EKVSPAVAKSYRDYR 85



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIV-EEACSGLQDVSSKIVLS-------ETYKNMYDGLSES 196
           + ++  DGT   FN +++ + V + A   L   + + +            +   +G++  
Sbjct: 1   MYVIKKDGTEEEFNVEKIVVAVNKSAARALYKFTPQEIEELCEFATRRAQEMGKEGITIQ 60

Query: 197 DLETALIFSSRTLIE 211
           ++   ++ S+   + 
Sbjct: 61  EMHN-IVESALEKVS 74


>gi|288869603|ref|ZP_05975186.2| anaerobic ribonucleoside-triphosphate reductase [Methanobrevibacter
           smithii DSM 2374]
 gi|288860553|gb|EFC92851.1| anaerobic ribonucleoside-triphosphate reductase [Methanobrevibacter
           smithii DSM 2374]
          Length = 776

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 10/179 (5%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
              S    +   + K+ +  ++G    F+ ++L   +           S  ++++   ++
Sbjct: 6   EKTSEIMKELANSKKINVEKNNGIKERFSYEKLLKSL--VMVETPFFESDKIVAQVVSSL 63

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG+   +++  +++     I+ E     + +  L  +  R+ +          T  E  
Sbjct: 64  YDGIKTKEIKK-IVYECLEDIDGEIANKYLASTQLKVRTSRDTIEAFDLSKIANTLIEET 122

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER-DFAFEYLGLQILYDRYFL 307
               E           A  + + +   ++ YL   +  E  +      GL+ L  RY  
Sbjct: 123 GASQETAFEI------ATEVWKELKKLNVEYLTAPMIREMVNTKLVEYGLEDLRSRYTR 175


>gi|222445683|ref|ZP_03608198.1| hypothetical protein METSMIALI_01324 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435248|gb|EEE42413.1| hypothetical protein METSMIALI_01324 [Methanobrevibacter smithii
           DSM 2375]
          Length = 776

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 10/179 (5%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
              S    +   + K+ +  ++G    F+ ++L   +           S  ++++   ++
Sbjct: 6   EKTSEIMKELANSKKINVEKNNGIKERFSYEKLLKSL--VMVETPFFESDKIVAQVVSSL 63

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG+   +++  +++     I+ E     + +  L  +  R+ +          T  E  
Sbjct: 64  YDGIKTKEIKK-IVYECLEDIDGEIANKYLASTQLKVRTSRDTIEAFDLSKIANTLIEET 122

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER-DFAFEYLGLQILYDRYFL 307
               E           A  + + +   ++ YL   +  E  +      GL+ L  RY  
Sbjct: 123 GASQETAFEI------ATEVWKELKKLNVEYLTAPMIREMVNTKLVEYGLEDLRSRYTR 175


>gi|148643443|ref|YP_001273956.1| anaerobic ribonucleoside-triphosphate reductase, NrdD
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552460|gb|ABQ87588.1| anaerobic ribonucleoside-triphosphate reductase, NrdD
           [Methanobrevibacter smithii ATCC 35061]
          Length = 776

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 10/179 (5%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
              S    +   + K+ +  ++G    F+ ++L   +           S  ++++   ++
Sbjct: 6   EKTSEIMKELANSKKINVEKNNGIKERFSYEKLLKSL--VMVETPFFESDKIVAQVVSSL 63

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249
           YDG+   +++  +++     I+ E     + +  L  +  R+ +          T  E  
Sbjct: 64  YDGIKTKEIKK-IVYECLEDIDGEIANKYLASTQLKVRTSRDTIEAFDLSKIANTLIEET 122

Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER-DFAFEYLGLQILYDRYFL 307
               E           A  + + +   ++ YL   +  E  +      GL+ L  RY  
Sbjct: 123 GASQETAFEI------ATEVWKELKKLNVEYLTAPMIREMVNTKLVEYGLEDLRSRYTR 175


>gi|299135085|ref|ZP_07028276.1| ATP-cone domain protein [Afipia sp. 1NLS2]
 gi|298590062|gb|EFI50266.1| ATP-cone domain protein [Afipia sp. 1NLS2]
          Length = 158

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSLQ------------ISLRKRPVDPERVEKMVSTIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHH--KITREYV----LYREER 125
           +  +S     +  E I + V    M+       +   YV    +YR+ R
Sbjct: 93  RELESGGEAEVSSEAIGEIV----MEHLRQLDDVA--YVRFASVYRDFR 135


>gi|86749752|ref|YP_486248.1| transcriptional regulator NrdR [Rhodopseudomonas palustris HaA2]
 gi|119372218|sp|Q2IWS3|NRDR_RHOP2 RecName: Full=Transcriptional repressor NrdR
 gi|86572780|gb|ABD07337.1| Protein of unknown function DUF193 [Rhodopseudomonas palustris
           HaA2]
          Length = 160

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     EQ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSLQ------------ISLRKRPVEPERVEQMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  +S     I  E I + V    M        +   YV    +YR  R
Sbjct: 93  RELESGGEADISSETIGEIV----MDHLRKLDDVA--YVRFASVYRNFR 135


>gi|241589596|ref|YP_002979621.1| Ribonucleotide reductase alpha subunit-like protein [Ralstonia
           pickettii 12D]
 gi|240868308|gb|ACS65967.1| Ribonucleotide reductase alpha subunit-like protein [Ralstonia
           pickettii 12D]
          Length = 442

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 34/193 (17%)

Query: 598 AVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
            +     INL  +       NN FD  +L   IR AVR LD++ D+        +     
Sbjct: 210 EMVAGSVINLCDYLADTPRENNWFDSKRLEEQIRLAVRELDSMHDVKETLGCLGQPG--L 267

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
            R IG+G+ G   AL  L +   + +A     +    +   A  AS +LA+E GA   F 
Sbjct: 268 GRRIGIGISGVAFALQQLGVAGNADKARAALAQVTRIVRDEAYRASCDLAEEVGASPWFD 327

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN-----CMAIA 767
              +  G                      +     EL +R++T G+RN++      MA  
Sbjct: 328 SVEFHTG--------------------PVADQLPPELVERIRTYGLRNAHIFGWALMADR 367

Query: 768 PTATIANICGVSQ 780
           P   ++   GV+ 
Sbjct: 368 PAFAVSV--GVTS 378


>gi|261886386|ref|ZP_06010425.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 90

 Score = 49.1 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 94  HIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130
            +E+IQD +E +L  SG   + R ++LYR   +  R 
Sbjct: 9   SVEEIQDIIEKALFDSGDFTVMRNFMLYRHTHTMQRD 45


>gi|290993049|ref|XP_002679146.1| predicted protein [Naegleria gruberi]
 gi|284092761|gb|EFC46402.1| predicted protein [Naegleria gruberi]
          Length = 659

 Score = 49.1 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 94/342 (27%), Gaps = 78/342 (22%)

Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605
           + K+   +   G P I F +     S         +     +    +         L S 
Sbjct: 316 YTKVSKRMEINGEPGIAFLENMRKFSR-------MNGIEDNKDFRATGGNPCLEQTLESY 368

Query: 606 NLLAHFANNQFDYDKLASTIRTA--VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663
            L         +++ L    RT     +    + +         +    +R IG  + G 
Sbjct: 369 ELCCLVETFPTNHESLEDFQRTLKYAFLFAKTVTLGKTHWPDVNRVMLRNRRIGCSMSGI 428

Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723
              +    I              ++  +     +  +  ++                   
Sbjct: 429 AQFITKRGIDE------------LKKWASVGYESIQDFDKKFS----------------- 459

Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783
                     D LA+ R+ +                     +I P+ T++ + G +  + 
Sbjct: 460 ----------DWLAIPRSIK-------------------TTSIKPSGTVSLLAGATPGMH 490

Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843
                 Y++     +    NS LV  L++     E  +SD          I   P D  +
Sbjct: 491 YPISRFYIRRLRLAN----NSPLVETLREAGFKTEPAVSDPNTT------IIEFPIDCGE 540

Query: 844 IHATAFEIDPMWLIESASRRQK-WIDQAQSLNLYLDEPSGKK 884
              TA E+     +  AS  QK W D   S  +  +  +  K
Sbjct: 541 GIRTAKELSMWEQLSLASFLQKYWSDNQVSATITFNPQTEGK 582


>gi|157265307|ref|YP_001467866.1| ribonucleoside-triphosphate reductase [Thermus phage P23-45]
 gi|156905202|gb|ABU96846.1| ribonucleoside-triphosphate reductase [Thermus phage P23-45]
          Length = 661

 Score = 49.1 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 122/448 (27%), Gaps = 106/448 (23%)

Query: 373 LTTVPDDLYGIFGALQENAMLA--KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
              V D   G   A++    L   ++   L  +   VR LG+ +    G + G  P L+ 
Sbjct: 166 TLVVGDSREGWAEAVKLFLELLGDRHVELLHVNLNSVRPLGSPLKRFGGFASGPGP-LED 224

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
               A  +  G   KG    + +   +DV   +  R       RR+  ++  +W    F+
Sbjct: 225 FFLNAAFILGGTIPKG----WTDVKALDVANLIG-RMVVAGGTRRSAQISLGDWDSKNFI 279

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
               +   W   +P      + +        YE  +R                       
Sbjct: 280 AA--KTGNWWATAPWRAQSNNSVL------FYEKPDR----------------DTLLSFF 315

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610
             + + G P        N ++  +        N C EI L        VCNL ++ L  H
Sbjct: 316 DAILQYGEPGF-----VNAQAALKRREDFRGLNPCAEIIL----RNKGVCNLVTVVLPNH 366

Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT-HRAIGLGLMGFQSALHL 669
             + Q DY  L  T+R   R    +       +    +      R IG+   G    +  
Sbjct: 367 VKDGQVDYALLEDTLRLLTRHAIRITMAQFPDVLSEWQRVQDEDRLIGVSFTGLDDFI-- 424

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                   +   +A       S     A    A+                          
Sbjct: 425 ---HLTGLDNDALAKVLAWMRSVVDDEAKRYSAELGIPKPK------------------- 462

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
                                               + P  T++ + GVS  + P+Y   
Sbjct: 463 --------------------------------LATTVKPEGTLSLLAGVSSGVHPAYAPY 490

Query: 790 YVKSNMSGDFTVVNSF--LVNELKQRDL 815
           Y++         +N    +   L+   +
Sbjct: 491 YIRRV------RINKHDSVAQALRALGM 512


>gi|116334462|ref|YP_795989.1| ribonucleotide reductase, alpha subunit [Lactobacillus brevis ATCC
           367]
 gi|122268859|sp|Q03PB4|RTPR_LACBA RecName: Full=Adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; Short=RTPR
 gi|116099809|gb|ABJ64958.1| Ribonucleotide reductase, alpha subunit [Lactobacillus brevis ATCC
           367]
          Length = 749

 Score = 48.7 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 79/623 (12%), Positives = 167/623 (26%), Gaps = 107/623 (17%)

Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY------SGGLGNDWTPVR 408
                +       L+      +PD   G   A                   +  D + +R
Sbjct: 207 GAVNRSEWMHDNSLADVRFYRLPDTREGWVLANANMMDAHFNSTNPEKKTKVVLDISDIR 266

Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468
              A IHG  G + G +P +++  D    +N      G     ++    D+   +     
Sbjct: 267 PKNAPIHGFGGTASGPMPLVEMLFDINQILNNA---VGRQLTAVDCT--DMGNMIGKTVV 321

Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528
            G+ RR                 +  ++  +        S+       +F          
Sbjct: 322 AGNVRRSAELALGGAEDDAFITMKQDKDQLYHHRW---ASNNSVAVDSDFTD-------- 370

Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT-E 587
                            +  +   +   G P I      N+   + +  ++        E
Sbjct: 371 -----------------YAPIADSIQHNGEPGI-----VNLGLSRNYGRLIDGRQEGIDE 408

Query: 588 ITLNSSSE-ETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
               ++   E ++ N    NL     +  +    +L        R     +  + +  E 
Sbjct: 409 AVEGTNPCGEISLSNGEPCNLFEVFPSVAEEQGWQLEDAFGLGAR-YTKRVTFSHYDWEV 467

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
           ++K+   +R IG+ + G Q  +                    +        A  + A+  
Sbjct: 468 SRKAIQKNRRIGVSMSGIQDWILKT----------------FKQRVVTGFEAKHD-AETG 510

Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765
             +     +      F      ++   +D               +  +K           
Sbjct: 511 KTFMQPIYNQAAVNRFNALYQAVVKADQDY--------SDTLGCQPSIK--------HTT 554

Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825
           + P+ T+A + GVS+ +   Y    ++      F   +  L+  LK        +  D+ 
Sbjct: 555 VKPSGTVAKLAGVSEGMHFHYARYLIQRIR---FQDSDP-LLPALKASGY---KVEPDVY 607

Query: 826 YHDGSIGNIERIPDDLKK-IHATAFEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGK 883
             +              +   A+A E+       + +  Q  W D A S  +      G+
Sbjct: 608 SQNTMCVEFPVKAAHADEPAFASAGEVSMAEQFATQAFLQTYWSDNAVSCTVTFQPEEGQ 667

Query: 884 KLDFIYRQAWLMGLKTT----YYLRSRSA-TSVEKSTLKGV--DGKLNAVPVTDPNSSTH 936
            +  +  Q +   +K+T    Y   S +      K  +     D K   +          
Sbjct: 668 DISDLLLQ-YRHTIKSTSLLPY---SGADFKQAPKEPIDAATYDAKCQEITADVAEKFAA 723

Query: 937 SLGIPSS----CTSDTECE--VC 953
             G            ++CE   C
Sbjct: 724 MTGNHDQKDIELVDQSDCESGAC 746


>gi|325171079|ref|YP_004251054.1| anaerobic nucleoside diphosphate reductase [Vibrio phage ICP1]
 gi|323512474|gb|ADX87929.1| anaerobic nucleoside diphosphate reductase [Vibrio phage ICP1]
          Length = 695

 Score = 48.7 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++V+KR+G    FD  KI  A+ K+  A         + + ++   + ++          
Sbjct: 1   MKVVKRDGIKQDFDIKKIFNAVSKS--ATRCNITLSEVDLVELEFLILDEVC-------- 50

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
               + ++++ + VE  L +    ++   Y  YR
Sbjct: 51  --GDIEVKELHNTVEKCLSRINP-EVADSYKQYR 81



 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 57/164 (34%), Gaps = 16/164 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESDLET 200
           +K++  DG    F+ K++   V ++ +     L +V    +       +   +   +L  
Sbjct: 1   MKVVKRDGIKQDFDIKKIFNAVSKSATRCNITLSEVDLVELEFLILDEVCGDIEVKELHN 60

Query: 201 ALIFSSRTLIEKEPNYAKVTAR-------FLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
             +    + I  E   +    R        L +K+  +    +Y   ++ ++ E   +  
Sbjct: 61  T-VEKCLSRINPEVADSYKQYRNYKQDFVGLWDKIYNKTKDVLYAGDRENSNFESTLVST 119

Query: 254 EY--FCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFE 294
           +      Y+ + +  +       + +   +    +++ RD  F 
Sbjct: 120 KGSLVKGYLAKELYTKFFLSK-EEKEATDIGFIYQHDQRDLIFN 162


>gi|300122456|emb|CBK23027.2| unnamed protein product [Blastocystis hominis]
          Length = 753

 Score = 48.7 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             ++ P+ T++ + G +  +      +Y++    G     N  LV  L++      +++ 
Sbjct: 475 TTSVKPSGTVSLLAGSTPGMHFPESRIYIRRMRMGK----NDPLVAPLRRAGY---SVVP 527

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNL-YLDEP 880
            +   D ++  +  +P  L        E+     +  A+  Q+ W D   S  + +  E 
Sbjct: 528 AIGQEDTTV--VVEVPVKLPANVRVQSEVSMFEQLSLAAFLQRYWADNQVSCTVTFDPES 585

Query: 881 SGKKLDFIYRQAWLMGLKTT 900
            G  +  + +  +   LK  
Sbjct: 586 EGPHIAQMLQY-FQYQLKGV 604


>gi|300120728|emb|CBK20282.2| unnamed protein product [Blastocystis hominis]
          Length = 717

 Score = 48.7 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             ++ P+ T++ + G +  +      +Y++    G     N  LV  L++      +++ 
Sbjct: 475 TTSVKPSGTVSLLAGSTPGMHFPESRIYIRRMRMGK----NDPLVAPLRRAGY---SVVP 527

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNL-YLDEP 880
            +   D ++  +  +P  L        E+     +  A+  Q+ W D   S  + +  E 
Sbjct: 528 AIGQEDTTV--VVEVPVKLPANVRVQSEVSMFEQLSLAAFLQRYWADNQVSCTVTFDPES 585

Query: 881 SGKKLDFIYRQAWLMGLKTT 900
            G  +  + +  +   LK  
Sbjct: 586 EGPHIAQMLQY-FQYQLKGV 604


>gi|292900754|ref|YP_003540123.1| anaerobic ribonucleoside-triphosphate reductase [Erwinia amylovora
           ATCC 49946]
 gi|291200602|emb|CBJ47733.1| anaerobic ribonucleoside-triphosphate reductase [Erwinia amylovora
           ATCC 49946]
          Length = 711

 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G   +FD +            +E    + +   +    +      +R+     +
Sbjct: 4   QVIKRDGCQVAFDQA-----------RIEAAIRAAAKAAKIDDDDYCANAASRVSALLSA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I D+Q  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 53  RQRVEIADVQQAVENLLMSGRYPQLARRYMEYRHDRDVARERQGRLNRE 101


>gi|75675918|ref|YP_318339.1| transcriptional regulator NrdR [Nitrobacter winogradskyi Nb-255]
 gi|91208016|sp|Q3SRV4|NRDR_NITWN RecName: Full=Transcriptional repressor NrdR
 gi|74420788|gb|ABA04987.1| Protein of unknown function DUF193 [Nitrobacter winogradskyi
           Nb-255]
          Length = 160

 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 35/141 (24%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     E  V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSLQ------------ISLRKRPVEPERIETMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREERSDVRAAQSHSK 136
           +  +S     I  E I + V    M+       +   YV    +YR    + R A+    
Sbjct: 93  RELESGGEAEISSETIGEIV----MEHLRSLDDVA--YVRFASVYR----NFREAKDFEA 142

Query: 137 SDAPIAPKLKIMMDDGTLISF 157
               ++ +     DD   +  
Sbjct: 143 VLGELSSE-----DDPRRVPL 158


>gi|312170917|emb|CBX79176.1| K00527 ribonucleoside-triphosphate reductase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 712

 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           QVIKR+G   +FD +            +E    + +   +    +      +R+     +
Sbjct: 4   QVIKRDGCQVAFDQA-----------RIEAAIRAAAKAAKIDDDDYCANAASRVSALLSA 52

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
              V I D+Q  VE  LM   + ++ R Y+ YR +R   R  Q     +
Sbjct: 53  RQRVEIADVQQAVENLLMSGRYPQLARRYMEYRHDRDVARERQGRLNRE 101


>gi|310005708|gb|ADP00095.1| ribonucleotide reductase domain-containing protein [Cyanophage
           NATL1A-7]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             SC +  V D + G   I  + +  +   ++  G     + +R  G H +G    + G 
Sbjct: 24  PVSCTVFVVEDSMEGKDGIEASWRFVSHALRHGAGCAVHLSKLRPKG-HDNGRGLTASGP 82

Query: 425 IPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + F K+ +     + +GG  K GAV  +L+  H D+ EF+ L ++     +R  D++  +
Sbjct: 83  VSFAKIYSTLNETLRRGGVYKNGAVVVHLDISHPDILEFVQLPRSEAPWIKRCVDLSPGD 142

Query: 484 W 484
           W
Sbjct: 143 W 143


>gi|220909393|ref|YP_002484704.1| ATP-cone domain-containing protein [Cyanothece sp. PCC 7425]
 gi|254768006|sp|B8HVN1|NRDR_CYAP4 RecName: Full=Transcriptional repressor NrdR
 gi|219866004|gb|ACL46343.1| ATP-cone domain protein [Cyanothece sp. PCC 7425]
          Length = 184

 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 20/98 (20%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    FD SK+ R I+ AF    GK    +IRV+ ++  +  +   R L+   SA
Sbjct: 51  VIKRDGQREPFDRSKLLRGIVTAF----GKNGIANIRVEALVDEIEAELQQRALREVTSA 106

Query: 91  LIVHIEDI-QDQVECSLMQSGHHKITREYV----LYRE 123
            I   E + Q+  E S       ++   YV    +YR+
Sbjct: 107 EIG--EAVLQNLKELS-------EVA--YVRFASVYRQ 133



 Score = 43.3 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYD----GLSESDL 198
           + ++  DG    F+  +L   +  A   +G+ ++  + ++ E    +       ++ +++
Sbjct: 49  ITVIKRDGQREPFDRSKLLRGIVTAFGKNGIANIRVEALVDEIEAELQQRALREVTSAEI 108

Query: 199 ETALIFSSRTLIE 211
             A++ + + L E
Sbjct: 109 GEAVLQNLKELSE 121


>gi|38707876|ref|NP_944999.1| Anaerobic nucleoside diphosphate reductase [Enterobacteria phage
           Felix 01]
 gi|33340479|gb|AAQ14830.1| putative anaerobic nucleoside diphosphate reductase [Enterobacteria
           phage Felix 01]
          Length = 714

 Score = 48.3 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 21/140 (15%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  VQ+IK+NG +   D  K+  A+ K+         +  +  +++  ++T+   +  ++
Sbjct: 1   MNKVQIIKKNGSLEEPDIKKVLAAVTKS---------ANRVGYKELPPDVTQALESAFMR 51

Query: 86  -----HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  ++ L++ + DI   VE +L +  H +I   Y  YR  R +V  AQ+  +    
Sbjct: 52  ILVKSTKQNNLLISVNDIHSIVEGALAEVNH-EIYESYSTYRNYRKEV--AQNWDELYQK 108

Query: 141 IAPKLKIMMDDGTLISFNSK 160
               L +    G   + N  
Sbjct: 109 TKDTLFL----GDRENANFD 124


>gi|91977143|ref|YP_569802.1| transcriptional regulator NrdR [Rhodopseudomonas palustris BisB5]
 gi|119372220|sp|Q136T8|NRDR_RHOPS RecName: Full=Transcriptional repressor NrdR
 gi|91683599|gb|ABE39901.1| Protein of unknown function DUF193 [Rhodopseudomonas palustris
           BisB5]
          Length = 160

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     EQ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSVQ------------ISLRKRPVEPERVEQLVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  +S+    I  E I + V    M        +   YV    +YR  R
Sbjct: 93  RELESSGEADISSETIGEIV----MDHLRKLDDVA--YVRFASVYRNFR 135


>gi|313117007|ref|YP_004038131.1| transcriptional regulator NrdR [Halogeometricum borinquense DSM
          11551]
 gi|312294959|gb|ADQ68995.1| transcriptional regulator NrdR [Halogeometricum borinquense DSM
          11551]
          Length = 169

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 16/62 (25%)

Query: 29 VQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          +QV KR+G +  FD  K    I RA+ K                 D +++L E     L 
Sbjct: 49 LQVKKRDGRIEPFDREKLRGGIERAVEK------------RPVDDDAVESLIEDVERELA 96

Query: 85 QH 86
            
Sbjct: 97 GR 98



 Score = 46.0 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSK 179
           R  R   R +   +  + P    L++   DG +  F+ ++L   +E A     + D + +
Sbjct: 26  RRRRECKRCSFRFTTYERPEWETLQVKKRDGRIEPFDREKLRGGIERAVEKRPVDDDAVE 85

Query: 180 IVLSETYKNM 189
            ++ +  + +
Sbjct: 86  SLIEDVEREL 95


>gi|157781903|gb|ABV72277.1| NrdA [Azospirillum brasilense]
          Length = 108

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438
           +  GI       A L KY  G G++++ +RG G  + G  GKS G++ FLK+ +  A A+
Sbjct: 4   NEGGIMDLWVREARLFKYGSGTGSNFSRLRGEGEKLAG-GGKSSGLMSFLKIGDRAAGAI 62

Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLR 466
             G   R+ A    ++  H D+E ++D +
Sbjct: 63  KSGGTTRRAAKMVTVDMDHPDIEAYIDWK 91


>gi|27380143|ref|NP_771672.1| transcriptional regulator NrdR [Bradyrhizobium japonicum USDA 110]
 gi|38258764|sp|Q89K77|NRDR_BRAJA RecName: Full=Transcriptional repressor NrdR
 gi|27353297|dbj|BAC50297.1| bll5032 [Bradyrhizobium japonicum USDA 110]
          Length = 160

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+      S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKL-------MRSVQ-----ISLRKRQVEPERVEKMVSTIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  ++     I  E I + V    M+       +   YV    +YR  R
Sbjct: 93  RELETGGEAEISSEVIGETV----MEHLRTLDDVA--YVRFASVYRNFR 135


>gi|25028919|ref|NP_738973.1| anaerobic ribonucleoside triphosphate reductase [Corynebacterium
           efficiens YS-314]
 gi|259507983|ref|ZP_05750883.1| anaerobic ribonucleoside-triphosphate reductase [Corynebacterium
           efficiens YS-314]
 gi|23494206|dbj|BAC19173.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Corynebacterium efficiens YS-314]
 gi|259164478|gb|EEW49032.1| anaerobic ribonucleoside-triphosphate reductase [Corynebacterium
           efficiens YS-314]
          Length = 728

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 72/209 (34%), Gaps = 34/209 (16%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             P  E I G+ V+K++G V  + P KI  ++  A         + S           +Q
Sbjct: 6   TLPAEELIIGLSVLKKDGRVVDYRPRKILNSLEAAERTSGEPLHAPS-----------DQ 54

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138
            +  + +      I+  ED+   VE +L QS    +   Y      R   R  +    S 
Sbjct: 55  LLGEITRRVAEHHIISTEDLSRLVEQTLAQSP--AVLAAY------RDYQRRQEEKINSS 106

Query: 139 APIAPKL--------KIMMDDGTLISFNSKRLEMIVEEA---CSGLQDVSSKIVLSETYK 187
             I   +        KI+ ++G   +        I+  A     GLQ +  + +     K
Sbjct: 107 TDITHAITGVVEGDAKILAENGNKDARTFTTQREILAGAVSKAKGLQML-PEDIRRAHLK 165

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNY 216
            +   +   DL+ +   +       + +Y
Sbjct: 166 GL---IHVHDLDRSPFAAMPNCSLPDFDY 191


>gi|269975274|gb|ACZ55498.1| anaerobic nucleoside diphosphate reductase [Staphylococcus phage
           SA1]
          Length = 714

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 29/144 (20%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  VQ+IK+NG +   D  K+  A+ K+         +  +  +++  ++T+   +  ++
Sbjct: 1   MNKVQIIKKNGSLEEPDIKKVLAAVTKS---------ANRVGYKELPPDVTQALESAFMR 51

Query: 86  -----HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  ++ L++ + DI   VE +L +  H +I   Y  YR  R +V          A 
Sbjct: 52  ILVKSTKQNNLLISVNDIHSIVEGALAEVNH-EIYESYSTYRNYRKEV----------AQ 100

Query: 141 IAPKLKIMMDD----GTLISFNSK 160
              +L     D    G   + N  
Sbjct: 101 NWDELYQKTRDTLFLGDRENANFD 124


>gi|134046497|ref|YP_001097982.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C5]
 gi|132664122|gb|ABO35768.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C5]
          Length = 791

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++   G    FN  +L   +  +    +++ +  +LSE Y  +Y+G+S  DL+T L 
Sbjct: 32  KINVVKRSGNEELFNVNKLVKSLLNSGVDYENIDA--ILSEIYSKVYNGMSTDDLKTILY 89

Query: 204 FSSRT 208
            + + 
Sbjct: 90  KTLKE 94


>gi|85715451|ref|ZP_01046432.1| hypothetical protein NB311A_17139 [Nitrobacter sp. Nb-311A]
 gi|85697646|gb|EAQ35522.1| hypothetical protein NB311A_17139 [Nitrobacter sp. Nb-311A]
          Length = 160

 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 35/141 (24%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     E  V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSLQ------------ISLRKRPVEPEQIETMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREERSDVRAAQSHSK 136
           +  +S     I  E I + V    M        +   YV    +YR    + R A+    
Sbjct: 93  RELESGGEAEISSETIGEIV----MDHLRSLDDVA--YVRFASVYR----NFREAKDFEA 142

Query: 137 SDAPIAPKLKIMMDDGTLISF 157
               ++ +     DD   +  
Sbjct: 143 VLGELSSE-----DDARRVPL 158


>gi|295109175|emb|CBL23128.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus obeum
           A2-162]
          Length = 711

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G    FDP KI +A+ K   +      + S   +D I    ++    L ++    
Sbjct: 4   VIKKDGTREEFDPQKIVKAVNK---SAARILYTFSQEERDFICRFAQEHADSLGKNE--- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             + I+++ + VE +L +     + + Y  YR
Sbjct: 58  --IEIQEMHNIVEGALERVNP-AVAKSYRDYR 86


>gi|300773288|ref|ZP_07083157.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759459|gb|EFK56286.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 281

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           +++    G L+ F    L+  +    SG  D   + V     +N+YDG+S  +L    
Sbjct: 1   MQVKKHSGELVPFEPNSLKQSLSR--SGASDQDVEKVFQSIQQNLYDGISTKELYKLA 56


>gi|76664795|emb|CAJ17837.1| ribonucleotide reductase alpha subunit [Candidatus Phytoplasma
           solani]
          Length = 89

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505
           GA   YL  +H D+E FL ++K   D+  R   ++    IPD  ++   +N     F P 
Sbjct: 2   GAGATYLNVFHADIENFLSIKKLNADEDVRVKTLSLGVIIPDKMIELARKNEVTYTFYPH 61

Query: 506 E 506
            
Sbjct: 62  T 62


>gi|170750354|ref|YP_001756614.1| ATP-cone domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|226733007|sp|B1LZ89|NRDR_METRJ RecName: Full=Transcriptional repressor NrdR
 gi|170656876|gb|ACB25931.1| ATP-cone domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 177

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 31/157 (19%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+           P  A  F      +++ V V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPSEDGAAIRRRRVCPDCAGRFTTFERVQLREVVVLKRSGKRVPFDRDKLQRSIDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI--EDIQDQVECSLMQSG 110
              AV            + I+ L    V+ + +  +SA    +  E I + V   L   G
Sbjct: 77  --RAV----------DPERIERL----VSGITRQLESAGEPEVTSEAIGELVMAGL--KG 118

Query: 111 HHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
              +   YV +     + R A+   +    ++  + +
Sbjct: 119 LDDVA--YVRFASVYKNFREARDFEELLGTLSDGMPV 153


>gi|115524815|ref|YP_781726.1| transcriptional regulator NrdR [Rhodopseudomonas palustris BisA53]
 gi|122295992|sp|Q07MT8|NRDR_RHOP5 RecName: Full=Transcriptional repressor NrdR
 gi|115518762|gb|ABJ06746.1| Ribonucleotide reductase regulator NrdR-like protein
           [Rhodopseudomonas palustris BisA53]
          Length = 160

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSLQ------------ISLRKRPVDPERLEEMVSAVV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  +S     I  E I + V    M+       +   YV    +YR  R
Sbjct: 93  RELESGGESEISSEAIGEIV----MEHLRKLDDVA--YVRFASVYRNFR 135


>gi|261886385|ref|ZP_06010424.1| anaerobic ribonucleoside triphosphate reductase [Campylobacter
          fetus subsp. venerealis str. Azul-94]
          Length = 43

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMA 56
          +++IKR+G +  F   KI  AI KA+ +
Sbjct: 1  MKIIKRDGSLQDFASYKIENAITKAYKS 28


>gi|153809853|ref|ZP_01962521.1| hypothetical protein RUMOBE_00234 [Ruminococcus obeum ATCC 29174]
 gi|149834031|gb|EDM89111.1| hypothetical protein RUMOBE_00234 [Ruminococcus obeum ATCC 29174]
          Length = 762

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G    FDP KI +A+ K+           +  +        +       +H  S 
Sbjct: 55  VIKKDGTREEFDPQKIVKAVNKS----------AARILYKFSPEEKDFICRFAQEHADSL 104

Query: 91  LIVHIEDIQ---DQVECSLMQSGHHKITREYVLYR 122
               IE IQ   + VE +L +     + + Y  YR
Sbjct: 105 GKNEIE-IQEMHNIVEGALERVNP-AVAKSYRDYR 137


>gi|289192803|ref|YP_003458744.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           sp. FS406-22]
 gi|288939253|gb|ADC70008.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           sp. FS406-22]
          Length = 937

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +L ++  D     FN  +L   +  +     D+    ++SE    +Y+G++  +L+  ++
Sbjct: 13  ELYVIKRDKRKEKFNVNKLAKSLINSGVNYGDLD--QIISEVCTKVYNGITTDELKD-VV 69

Query: 204 FSSRTLIEKEPNYAKVTARFL-LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           ++    I+K+          L +    +E      +K  KA   E             E 
Sbjct: 70  YNILKKIDKDVAENYRKGIILKVRTSEKEFEPFDKEKIVKALIRETGADKETAQKIADEV 129

Query: 263 GVKARLLHESM 273
             + + L    
Sbjct: 130 ERELKKLKVKY 140


>gi|296124322|ref|YP_003632100.1| ATP-cone domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016662|gb|ADG69901.1| ATP-cone domain protein [Planctomyces limnophilus DSM 3776]
          Length = 154

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 108 QSGHHKITRE-----YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRL 162
           + G  K+        +V+ R  R  +  A+  +  +      ++++  DG+ + F+  ++
Sbjct: 7   RHGETKVIDSRTSQDFVI-RRRRECLACARRFTTYEKIEESPIRVIKKDGSRVPFDRDKI 65

Query: 163 EMIVEEACSG--LQDVSSKIVLSETYKNMYDG----LSESDLETALIFSSRTL 209
              +E+AC    +     + ++S   + +Y+     +   ++   ++   RTL
Sbjct: 66  AQGLEKACYKRPISPERIEEIISAIERELYENFDREVPSREIGERVMEQLRTL 118



 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIK++G    FD  KI++ + KA      K      R+++II  +  +      +   
Sbjct: 48  IRVIKKDGSRVPFDRDKIAQGLEKA----CYKRPISPERIEEIISAIERELYENFDREVP 103

Query: 89  SALI 92
           S  I
Sbjct: 104 SREI 107


>gi|90419409|ref|ZP_01227319.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336346|gb|EAS50087.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 168

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 27/121 (22%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ +QV+K++G    FD  K    +  A+ K   +V            D ++ L    V
Sbjct: 45  QLRELQVLKKSGRKVPFDRDKLARSVEVALRK--RSV----------DPDRVERLISGIV 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYREERSDVRAAQSHSK 136
            RL Q       V  E + + V  +L   G   +   YV    +YR+ R + R  QS   
Sbjct: 93  RRLEQS--GEQEVRSEALGEMVMEAL--KGLDDVA--YVRFASVYRDFR-EARDFQSLIG 145

Query: 137 S 137
            
Sbjct: 146 E 146


>gi|225573040|ref|ZP_03781795.1| hypothetical protein RUMHYD_01231 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039604|gb|EEG49850.1| hypothetical protein RUMHYD_01231 [Blautia hydrogenotrophica DSM
           10507]
          Length = 711

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           +IK++G    F+  KI  A+ K+           +  +    +   E       +  +S 
Sbjct: 4   IIKKDGTREEFNAEKIVTAVNKS----------AARILYKFSEEEKEFICRFATEKAESL 53

Query: 91  LIVHIEDIQD---QVECSLMQSGHHKITREYVLYR 122
               I  IQD    VE +L +     + + Y  YR
Sbjct: 54  GKKEI-PIQDMHNIVEGALERVNP-AVAKSYRDYR 86


>gi|15211882|emb|CAC51111.1| ribonucleotide reductase large subunit [Bacillus sp. BSG40]
          Length = 47

 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 873 LNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             L+L +  + + L+ I   A   G+KT YY R++  T 
Sbjct: 1   FTLFLKDTMTTRDLNRIDLYAHHRGIKTLYYARTKDTTQ 39


>gi|323512705|gb|ADX88159.1| anaerobic nucleoside diphosphate reductase [Vibrio phage
           ICP1_2006_D]
 gi|323512933|gb|ADX88386.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2006_C]
 gi|323513161|gb|ADX88613.1| anaerobic nucleoside diphosphate reductase [Vibrio phage
           ICP1_2006_B]
 gi|323513388|gb|ADX88839.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2006_A]
 gi|323513620|gb|ADX89070.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2005_A]
          Length = 721

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + ++V+KR+G    FD  KI  A+ K+  A         + + ++   + ++        
Sbjct: 25  EKLKVVKRDGIKQDFDIKKIFNAVSKS--ATRCNITLSEMDLVELEFLILDEVC------ 76

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                 + ++++ + VE  L +    ++   Y  YR
Sbjct: 77  ----GDIEVKELHNTVEKCLSRINP-EVADSYKQYR 107



 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 58/166 (34%), Gaps = 16/166 (9%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESDL 198
            KLK++  DG    F+ K++   V ++ +     L ++    +       +   +   +L
Sbjct: 25  EKLKVVKRDGIKQDFDIKKIFNAVSKSATRCNITLSEMDLVELEFLILDEVCGDIEVKEL 84

Query: 199 ETALIFSSRTLIEKEPNYAKVTAR-------FLLEKLRREVLTTVYKKPQKATHHEMQCL 251
               +    + I  E   +    R        L +K+  +    +Y   ++ ++ E   +
Sbjct: 85  HNT-VEKCLSRINPEVADSYKQYRNYKQDFVGLWDKIYNKTKDVLYAGDRENSNFESTLV 143

Query: 252 YPEY--FCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFE 294
             +      Y+ + +  +       + +   +    +++ RD  F 
Sbjct: 144 STKGSLVKGYLAKELYTKFFLSK-EEKEATDIGFIYQHDQRDLIFN 188


>gi|159905115|ref|YP_001548777.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C6]
 gi|159886608|gb|ABX01545.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C6]
          Length = 791

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++   G   +FN  +L   +  +    +++ +  +LSE Y  +Y+G+S  DL+T L 
Sbjct: 32  KINVVKRSGNEETFNVNKLVKSLLNSGVDYENIDA--ILSEIYGKVYNGMSTDDLKTILY 89

Query: 204 FSSRT 208
            + + 
Sbjct: 90  KTLKE 94


>gi|327405169|ref|YP_004346007.1| ATP-cone domain-containing protein [Fluviicola taffensis DSM 16823]
 gi|327320677|gb|AEA45169.1| ATP-cone domain protein [Fluviicola taffensis DSM 16823]
          Length = 284

 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           L +    G    F+ ++++  +  + +    +    +L E  KNMY+G++  ++    
Sbjct: 5   LTVTKASGEQSPFSEEKIKKSLRRSGADEDQID--FILQEIKKNMYNGMTTRNIYKTA 60


>gi|92117360|ref|YP_577089.1| transcriptional regulator NrdR [Nitrobacter hamburgensis X14]
 gi|119372209|sp|Q1QMB8|NRDR_NITHX RecName: Full=Transcriptional repressor NrdR
 gi|91800254|gb|ABE62629.1| Protein of unknown function DUF193 [Nitrobacter hamburgensis X14]
          Length = 160

 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     E  V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSLQ------------ISLRKRPVEPERVETMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  +S     I  E I + V    M+       +   YV    +YR  R
Sbjct: 93  RELESGGEAEISSEIIGEIV----MEHLRSLDDVA--YVRFASVYRNFR 135


>gi|298291638|ref|YP_003693577.1| ATP-cone domain protein [Starkeya novella DSM 506]
 gi|296928149|gb|ADH88958.1| ATP-cone domain protein [Starkeya novella DSM 506]
          Length = 172

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 31/137 (22%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            P++D          P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPTEDSAAIRRRRICPDCGGRFTTFERVQLRELTVLKRSGRRVPFDRDKLARSIEVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + ++ L    V RL    +S   +  E I ++V  SL      
Sbjct: 77  ------------RPVDPERVERLVSGLVRRLESMGESE--ISSEMIGERVMESL--KQLD 120

Query: 113 KITREYV----LYREER 125
            +   YV    +YR  R
Sbjct: 121 DVA--YVRFASVYRNFR 135


>gi|209884994|ref|YP_002288851.1| transcriptional regulator NrdR [Oligotropha carboxidovorans OM5]
 gi|226733010|sp|B6JGI0|NRDR_OLICO RecName: Full=Transcriptional repressor NrdR
 gi|209873190|gb|ACI92986.1| transcriptional regulator NrdR [Oligotropha carboxidovorans OM5]
          Length = 158

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSLQ------------ISLRKRPVETERLEKMVSTIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQSGHH--KITREYV----LYREER 125
           +  +S+    I  E I + V    M++      +   YV    +YR  R
Sbjct: 93  RELESSGEAEISSEMIGEIV----MENLRQLDDVA--YVRFASVYRNFR 135


>gi|150403147|ref|YP_001330441.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C7]
 gi|150034177|gb|ABR66290.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis C7]
          Length = 791

 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K+ ++   G   +FN  +L   +  +    +++ +  +LSE Y  +Y+G+S  DL++ L 
Sbjct: 32  KINVVKRSGNEETFNVNKLVKSLLNSGVDYENIDA--ILSEIYGKVYNGMSTDDLKSILY 89

Query: 204 FSSRT 208
            + + 
Sbjct: 90  KTLKE 94


>gi|39935792|ref|NP_948068.1| transcriptional regulator NrdR [Rhodopseudomonas palustris CGA009]
 gi|192291381|ref|YP_001991986.1| NrdR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|59799117|sp|Q6N692|NRDR_RHOPA RecName: Full=Transcriptional repressor NrdR
 gi|226736127|sp|B3QJK5|NRDR_RHOPT RecName: Full=Transcriptional repressor NrdR
 gi|39649645|emb|CAE28167.1| DUF193:ATP cone domain [Rhodopseudomonas palustris CGA009]
 gi|192285130|gb|ACF01511.1| ATP-cone domain protein [Rhodopseudomonas palustris TIE-1]
          Length = 160

 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 14/76 (18%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V+      S+R + +     EQ V+ ++
Sbjct: 45  QLRELIVIKRNGRRVPFDRDKL-------MRSVQ-----ISLRKRPVDPERVEQMVSAIV 92

Query: 85  QHNKSALIVHI--EDI 98
           +  +S     I  E I
Sbjct: 93  RELESGGEAEISSETI 108


>gi|288932406|ref|YP_003436466.1| restriction endonuclease [Ferroglobus placidus DSM 10642]
 gi|288894654|gb|ADC66191.1| restriction endonuclease [Ferroglobus placidus DSM 10642]
          Length = 261

 Score = 46.8 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            +++   DG L  F+  ++      + + ++   ++ VL +  + +YDG++  ++   +I
Sbjct: 1   MVRVRKKDGRLEEFDRTKVLKTCLRSGANVE--IAEKVLRDVEERLYDGITTDEILEIVI 58

Query: 204 FS 205
            S
Sbjct: 59  ES 60


>gi|15669019|ref|NP_247823.1| anaerobic ribonucleoside-triphosphate reductase NrdD
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2496131|sp|Q58242|Y832_METJA RecName: Full=Uncharacterized protein MJ0832; Contains: RecName:
           Full=Mja rnr-1 intein; Contains: RecName: Full=Mja rnr-2
           intein
 gi|1591520|gb|AAB98834.1| anaerobic ribonucleoside-triphosphate reductase (nrdD)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 1750

 Score = 46.8 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           +  ++  D     FN  +L   +  +     D+    ++SE    +Y+G++  +L+  ++
Sbjct: 13  EFYVIKRDKRKEKFNVNKLAKSLINSGVNYGDLD--TIISEVCAKVYNGITTDELKD-IV 69

Query: 204 FSSRTLIEKEPNYAKVTARFL-LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262
           ++    I+K+          L +    +E  +   +K  KA   E             E 
Sbjct: 70  YNVLKKIDKDVAENYRNGIILKVRTSEKEFESFDKEKIAKALIRETGADEETARKIADEV 129

Query: 263 GVKARLLHESM 273
             + + L    
Sbjct: 130 ERELKKLKVKY 140


>gi|90424159|ref|YP_532529.1| transcriptional regulator NrdR [Rhodopseudomonas palustris BisB18]
 gi|119372219|sp|Q214H6|NRDR_RHOPB RecName: Full=Transcriptional repressor NrdR
 gi|90106173|gb|ABD88210.1| Protein of unknown function DUF193 [Rhodopseudomonas palustris
           BisB18]
          Length = 161

 Score = 46.4 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 26/109 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     E+ V+ ++
Sbjct: 45  QLRELTVIKRNGRRVPFDRDKLVRSVQ------------ISLRKRPVEPEKVEKMVSAIV 92

Query: 85  QHNKSALIVHI--EDIQDQVECSLMQS--GHHKITREYV----LYREER 125
           +  +SA    I  E I + V    M+       +   YV    +YR  R
Sbjct: 93  RELESAGEAEISSEAIGEIV----MEHLRKLDDVA--YVRFASVYRNFR 135


>gi|291547153|emb|CBL20261.1| anaerobic ribonucleoside-triphosphate reductase [Ruminococcus sp.
           SR1/5]
          Length = 711

 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G    F+P KI  A+ K   + E    + S   +D I    ++    L ++    
Sbjct: 4   VIKKDGTREEFNPQKIVAAVNK---SAERILYTFSDEEKDFICRFAQEHADSLGKNE--- 57

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             + I+++ + VE +L +     + + Y  YR
Sbjct: 58  --IEIQEMHNIVEGALERVNP-AVAKSYRDYR 86


>gi|254562343|ref|YP_003069438.1| NrdR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254269621|emb|CAX25592.1| transcriptional regulator NrdR [Methylobacterium extorquens DM4]
          Length = 185

 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 27/127 (21%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+D +        P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPSEDSSAIRRRRVCPDCGGRFTTFERVQLRELVVLKRSGKRVPFDRDKLQRSIDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + ++ L      RL   +     V  E I + V   L   G  
Sbjct: 77  ------------RTVDPERVERLVSGITRRL--ESGGEGEVTSEAIGEAVMEGL--KGLD 120

Query: 113 KITREYV 119
            +   YV
Sbjct: 121 DVA--YV 125


>gi|240139919|ref|YP_002964396.1| transcriptional regulator NrdR [Methylobacterium extorquens AM1]
 gi|240009893|gb|ACS41119.1| transcriptional regulator NrdR [Methylobacterium extorquens AM1]
          Length = 173

 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 27/127 (21%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+D +        P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 5   RPSEDSSAIRRRRVCPDCGGRFTTFERVQLRELVVLKRSGKRVPFDRDKLQRSIDVALRK 64

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + ++ L      RL   +     V  E I + V   L   G  
Sbjct: 65  ------------RTVDPERVERLVSGITRRL--ESGGEGEVTSEAIGEAVMEGL--KGLD 108

Query: 113 KITREYV 119
            +   YV
Sbjct: 109 DVA--YV 113


>gi|188582605|ref|YP_001926050.1| NrdR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|226733006|sp|B1ZJM9|NRDR_METPB RecName: Full=Transcriptional repressor NrdR
 gi|179346103|gb|ACB81515.1| ATP-cone domain protein [Methylobacterium populi BJ001]
          Length = 185

 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 27/127 (21%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+D +        P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPSEDSSAIRRRRVCPDCGGRFTTFERVQLRELVVLKRSGKRVPFDRDKLQRSIDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + ++ L      RL   +     V  E I + V   L   G  
Sbjct: 77  ------------RTVDPERVERLVSGITRRL--ESGGEGEVTSEAIGEAVMEGL--KGLD 120

Query: 113 KITREYV 119
            +   YV
Sbjct: 121 DVA--YV 125


>gi|218531425|ref|YP_002422241.1| NrdR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|254768018|sp|B7KUT4|NRDR_METC4 RecName: Full=Transcriptional repressor NrdR
 gi|218523728|gb|ACK84313.1| ATP-cone domain protein [Methylobacterium chloromethanicum CM4]
          Length = 185

 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 27/127 (21%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+D +        P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPSEDSSAIRRRRVCPDCGGRFTTFERVQLRELVVLKRSGKRVPFDRDKLQRSIDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + ++ L      RL   +     V  E I + V   L   G  
Sbjct: 77  ------------RTVDPERVERLVSGITRRL--ESGGEGEVTSEAIGEAVMEGL--KGLD 120

Query: 113 KITREYV 119
            +   YV
Sbjct: 121 DVA--YV 125


>gi|163852585|ref|YP_001640628.1| ATP-cone domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|226733004|sp|A9VYW5|NRDR_METEP RecName: Full=Transcriptional repressor NrdR
 gi|163664190|gb|ABY31557.1| ATP-cone domain protein [Methylobacterium extorquens PA1]
          Length = 185

 Score = 46.4 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 27/127 (21%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+D +        P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPSEDSSAIRRRRVCPDCGGRFTTFERVQLRELVVLKRSGKRVPFDRDKLQRSIDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + ++ L      RL   +     V  E I + V   L   G  
Sbjct: 77  ------------RTVDPERVERLVSGITRRL--ESGGEGEVTSEAIGEAVMEGL--KGLD 120

Query: 113 KITREYV 119
            +   YV
Sbjct: 121 DVA--YV 125


>gi|454035|gb|AAA18339.1| ORF1, homologous to UL45 in GenBank Accession Number X17403 [Human
           herpesvirus 6]
          Length = 185

 Score = 46.4 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 24/128 (18%)

Query: 775 ICGVSQSIDPSYQN----------------------LYVKSNMSGDFTVVNSFLVNELKQ 812
           I   S+S  P   N                      +Y     S    V N+ L+N   +
Sbjct: 4   IINSSESFWPMEDNKILRRSNIKVVIGKDGLNDVTSVYSSELKSLYIPVYNNLLLNRFNK 63

Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872
              + + +   +   D ++   + + D    +    F      LIE       ++DQ Q+
Sbjct: 64  HQQYLKTVGYRVLNVDTNLFTDKELDD--LAVFKDGFSYHLNDLIEMYKSGLPFLDQGQA 121

Query: 873 LNLYLDEP 880
              Y ++ 
Sbjct: 122 NVFYFNDT 129


>gi|308233666|ref|ZP_07664403.1| anaerobic ribonucleoside triphosphate reductase [Atopobium
          vaginae DSM 15829]
          Length = 59

 Score = 46.4 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA 53
          +++IKRNG    F+  KI  AI  A
Sbjct: 1  MKIIKRNGSEVEFNLHKIINAISAA 25


>gi|319942807|ref|ZP_08017109.1| anaerobic nucleoside diphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
 gi|319803617|gb|EFW00573.1| anaerobic nucleoside diphosphate reductase [Sutterella
           wadsworthensis 3_1_45B]
          Length = 724

 Score = 46.4 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 16/131 (12%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +V+K++  +  F P KI  AIMKA               + I           + +  +S
Sbjct: 7   KVLKKDNTLEDFKPQKIVEAIMKA----------AFRCDKQIPDETMFAMANSISERLQS 56

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
              V + ++ + V  +L   G   +   Y  YR  +++        + DA        ++
Sbjct: 57  RKKVPVAELHELVIGTLATFGFKDVATSYAEYRYYKNNYAKTFEQLRQDADD------VL 110

Query: 150 DDGTLISFNSK 160
             G   + N  
Sbjct: 111 RLGDRENANFD 121


>gi|332292994|ref|YP_004431603.1| hypothetical protein Krodi_2357 [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171080|gb|AEE20335.1| hypothetical protein Krodi_2357 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 279

 Score = 46.0 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           I   +++    G  + F+ ++L+  +  + +G  DVS   +L+     +Y G+S  ++  
Sbjct: 2   IKKSIQVKKSSGEKVDFSLEKLKASLHRSGAGENDVSH--ILNIVRDELYQGISTKEIYN 59


>gi|238801857|ref|YP_002922907.1| anaerobic nucleoside diphosphate reductase [Enterobacteria phage
           WV8]
 gi|216263070|gb|ACJ71938.1| anaerobic nucleoside diphosphate reductase [Enterobacteria phage
           WV8]
          Length = 714

 Score = 46.0 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 21/140 (15%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  VQ+IK+NG +   D  K+  A+ K+         +  +  +++  ++T+   +  ++
Sbjct: 1   MNKVQIIKKNGSLEEPDIKKVLAAVAKS---------ANRVGYKELPPDVTQALESAFMR 51

Query: 86  -----HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140
                  ++ L++ + DI   VE +L +  H +I   Y  YR  R +V  AQ+  +    
Sbjct: 52  ILVKSTKQNNLLISVNDIHSIVEGALAEVNH-EIYESYSTYRNYRKEV--AQNWDELYQK 108

Query: 141 IAPKLKIMMDDGTLISFNSK 160
               L +    G   + N  
Sbjct: 109 TKDTLFL----GDRENANFD 124


>gi|42518223|ref|NP_964153.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           johnsonii NCC 533]
 gi|41582507|gb|AAS08119.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii NCC 533]
 gi|329666534|gb|AEB92482.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii DPC 6026]
          Length = 736

 Score = 46.0 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI   +            S  +   +         +  +LQ    A 
Sbjct: 21  IKRDGSIYPFALYKIEMVL-----------DSLHLTEHE------ADILPAILQKLNGAK 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               E I D    +L++ G       YV YR      R  +++ K       +L +++  
Sbjct: 64  QTSTEKIADAFVQTLIELGFSDEANAYVDYR------REDEANFKKQTETTNRLGRLIHH 117

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 118 DPTIVNENANKDSRVFS 134


>gi|312113517|ref|YP_004011113.1| ATP-cone domain protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218646|gb|ADP70014.1| ATP-cone domain protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 159

 Score = 46.0 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 21/103 (20%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+D        + P     F      +++ + +IKR+G    FD  K    I  A  K
Sbjct: 17  RPSEDHTAIRRRRSCPECGARFTTFERVQLRELTIIKRSGRRVPFDREKLRRSIEIATRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
                           +D I+    + V +L   N+S +   I
Sbjct: 77  ------------RPIGEDRIEQFVSEIVRKLEISNESEIPSEI 107


>gi|288559499|ref|YP_003422985.1| anaerobic ribonucleoside-triphosphate reductase NrdD
           [Methanobrevibacter ruminantium M1]
 gi|288542209|gb|ADC46093.1| anaerobic ribonucleoside-triphosphate reductase NrdD
           [Methanobrevibacter ruminantium M1]
          Length = 780

 Score = 46.0 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 61/173 (35%), Gaps = 12/173 (6%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
            +     K+ +  ++G   +F+ ++L   +           S+ ++S   +N+YDG++  
Sbjct: 18  ENDIRKAKITVKKNNGVCEAFSYEKLLKSL--VMVEAPYFESEKIVSTVVENLYDGITTK 75

Query: 197 DLETALIFSSRTLIEKEPNYAKVTA-RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255
           +++  +++     ++ E     +      +   R ++      K       E        
Sbjct: 76  EIKK-IVYECLEEVDSEAANKYLAKTTLKVRSSRDKIEPFDMAKIASTLVEETGASQETA 134

Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFEYLGLQILYDRYFL 307
           F         A  + + +   ++ YL   +  E  +      GL+ L  RY  
Sbjct: 135 FEI-------ASEVWKELKKLNVEYLTAPMIREIVNTKLVEYGLEDLRSRYTR 180


>gi|76803439|ref|YP_327708.1| transcriptional regulator NrdR [Natronomonas pharaonis DSM 2160]
 gi|114152101|sp|Q3IM07|NRDR_NATPD RecName: Full=Transcriptional repressor NrdR
 gi|76559254|emb|CAI50861.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 162

 Score = 46.0 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS--GLQDVSSK 179
           R  R   R +   +  + P    L++   DGT+ SF+ ++L   +E A    G+ + +  
Sbjct: 26  RRRRECQRCSFRFTTYERPEWKSLQVKKRDGTIESFDQQKLRTGIERAVEKRGVAETTVT 85

Query: 180 IVLSETYKNMYDG----LSESDLETALIFSSRTL 209
            ++ +    + D     +S S +   +  + RTL
Sbjct: 86  ALVDDIESELQDREARIVSSSLIGELVSENLRTL 119



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          K +QV KR+G + SFD  K+   I +A   VE +G + +      +  L +   + L   
Sbjct: 47 KSLQVKKRDGTIESFDQQKLRTGIERA---VEKRGVAET-----TVTALVDDIESELQDR 98


>gi|325960250|ref|YP_004291716.1| anaerobic ribonucleoside-triphosphate reductase [Methanobacterium
           sp. AL-21]
 gi|325331682|gb|ADZ10744.1| anaerobic ribonucleoside-triphosphate reductase [Methanobacterium
           sp. AL-21]
          Length = 773

 Score = 46.0 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 81/630 (12%), Positives = 170/630 (26%), Gaps = 102/630 (16%)

Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187
            R  +    +  P   +  ++ ++G    F  +++         G    +++ + S   K
Sbjct: 6   ERNER--IIAALPTRAQTCVIKNNGIFERFTHEKIVKSC--LMVGAPLWAAEKISSYVAK 61

Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
             YDG+S +++   L++     ++ +     + +  L  +  R+ +    ++  + T   
Sbjct: 62  AAYDGISTAEI-KMLVYDCLKKVDLKTADKYLASTALKVRTTRDTIEPFDQRKIEKTLIV 120

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFEYLGLQILYDRYF 306
                 E   +       A    + +   D+ YL   +  E  +      GL+ L  +Y 
Sbjct: 121 ETEASGELARKI------ATQTWKELKKLDVDYLTAPMIREIVNTKLVENGLETLRKKYT 174

Query: 307 L----------------HINGSRIEMP-------------QAFFMRV-----AMGLALKE 332
                              N + I  P             Q   +R+     A      +
Sbjct: 175 RLGIPVYNITNLIKNGSRDNANMIHNPETVHKYVADEALKQYALLRILPNELADAHMSGD 234

Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENA 391
                  +EF+                  G +             P+ +  +     E  
Sbjct: 235 IH--IHDLEFFAGRPLNCLQHDLRFFIKHGLKVDGTGDHTSVAGPPNHIETLMNHSGEIM 292

Query: 392 MLAK--YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449
           + A+   SGG       V           GK +  +  L + N       +G  +     
Sbjct: 293 LAAQQNMSGGQSMSLWNVFVAPFAAGLPYGKVKQAVEML-IYNLNMAYAARGS-QVPFTS 350

Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK-RVTQNAGWTLFSPDEVS 508
             LE     V +FL+      D+              D   + R+ Q A        +  
Sbjct: 351 MNLEFT---VPKFLE------DEPAYGPKGKQVGVYGDYEEETRLLQRAFTETLLAGDSD 401

Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568
               L+         N        ++K+  ++SA            + G  +       N
Sbjct: 402 GKPHLFPNTIYNLRANMMNDEFYDDLKLVHELSA------------KYGSSYFVN----N 445

Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS-----INLLAHFANNQFD------ 617
           +   +  +               +   E      G+     +NL     N++ D      
Sbjct: 446 LPDYRGDMANYMGCRTSLGDNW-TGDWEQDCFRTGNLAYVTLNLPRIAYNSRDDTDVFEY 504

Query: 618 ---YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG-------LGLMGFQSAL 667
              Y KL   +    R        N + +    +     R           G +G    L
Sbjct: 505 LDSYMKLGEEVLMLRREQAMNCLDNYNLLPFLTQEAEGDRYYHIDNATLSFGFVGLNEML 564

Query: 668 HL-LHIPYASPEAVEIADESMEFISFHAIS 696
                      +A +   + ++ I+  A  
Sbjct: 565 MSHCGNGIDDDDARKFGLDVLKHINKRADE 594


>gi|297619990|ref|YP_003708095.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           voltae A3]
 gi|297378967|gb|ADI37122.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           voltae A3]
          Length = 772

 Score = 45.6 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 5/172 (2%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196
           +   I P +KI+   G    F+  +L   +  +     DV    +LS  Y+++ +G++  
Sbjct: 3   ASKKIVPDIKIIKKSGDSEQFDINKLVKSLLNSGVDYSDVEP--ILSNLYEDIDEGMTTE 60

Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256
            L+ ++        E+               L+       ++   K    E         
Sbjct: 61  QLKKSIYNVLYEYEEEHGKSKYSEKYLYDNCLKIRTSGKEFEGFDKNKIAEALINEANAD 120

Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYE-RDFAFEYLGLQILYDRYFL 307
                +   A  + + +   ++ YL   +  E  ++     GL+ +  ++  
Sbjct: 121 ESVALKI--ANEVEKELKKMNVKYLTAPMIREVVNYKLIEHGLEDIRHQHTR 170


>gi|84489081|ref|YP_447313.1| anaerobic ribonucleotide-triphosphate reductase [Methanosphaera
           stadtmanae DSM 3091]
 gi|84372400|gb|ABC56670.1| anaerobic ribonucleotide-triphosphate reductase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 771

 Score = 45.6 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 66/178 (37%), Gaps = 16/178 (8%)

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEM--IVEEACSGLQDVSSKIVLSETYKNMYD 191
            +  D     ++ ++ +DG    F+ ++L    I+     GL    ++ +  +  K  +D
Sbjct: 6   ETIQDTYNLNEIHVIKNDGIKEKFSYEKLVKSCIMINIPLGL----AEKIAYKVSKKAHD 61

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEK-LRREVLTTVYKKPQKATHHEMQC 250
            ++  +++  +      L++KE    K+  ++     LR        +   K+       
Sbjct: 62  NITTKEIKNLIYK----LLQKEN--TKLADKYYNNNTLRVRTGRDTIEAFDKSKIANTLI 115

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER-DFAFEYLGLQILYDRYFL 307
              +   +  ++   A  +++ +    L YL   +  E  +      GL+ L  +Y  
Sbjct: 116 QETQTTPKLADKI--ATEVYKELKKLQLDYLTAPIIREMVNTKLTENGLESLRRKYTR 171


>gi|330836647|ref|YP_004411288.1| Transcriptional repressor nrdR [Spirochaeta coccoides DSM 17374]
 gi|329748550|gb|AEC01906.1| Transcriptional repressor nrdR [Spirochaeta coccoides DSM 17374]
          Length = 162

 Score = 45.6 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIKR+G +  F+  KI R +    +A +           + I+ + +     ++    
Sbjct: 49  LRVIKRDGRIEDFNLDKIERGVR---IATDKLKV-----TPETIEQILQNIEDSVVLQAG 100

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITR-EYV----LYRE 123
           S   +  + I    E +L     +K+ +  YV    +YR 
Sbjct: 101 SKREITSKAIG---EETL--RQLYKVDKVAYVRFASVYRA 135



 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
           +  I   L+++  DG +  FN  ++E  V  A   L+ V+ + +     +N+ D +
Sbjct: 42  ERIIDTPLRVIKRDGRIEDFNLDKIERGVRIATDKLK-VTPETIEQ-ILQNIEDSV 95


>gi|325847039|ref|ZP_08169865.1| hypothetical protein HMPREF9246_1200 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481011|gb|EGC84056.1| hypothetical protein HMPREF9246_1200 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 130

 Score = 45.6 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG +  FD  KISR+I  A  A  G     +  V  +  +L +       +   +A
Sbjct: 44  VKKRNGKIELFDVEKISRSIKNA--ARNGNIELNTSDVSILKNDLEKIIKKNHHRILPTA 101

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                  I++ VE  L + G+ K+   Y  Y
Sbjct: 102 T------IKEYVENILEEDGYKKVLESYTSY 126



 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 37/150 (24%)

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +LT+  V            + IE+I DQ     M                 R+ V     
Sbjct: 3   DLTKLIVE-----YYQGKNLSIEEIADQ-----MD----------------RAKV----- 31

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNM 189
               +  +  KL +   +G +  F+ +++   ++ A       L      I+ ++  K +
Sbjct: 32  -EVIENFLDNKLYVKKRNGKIELFDVEKISRSIKNAARNGNIELNTSDVSILKNDLEKII 90

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKV 219
                   L TA I      I +E  Y KV
Sbjct: 91  KKN-HHRILPTATIKEYVENILEEDGYKKV 119


>gi|23008994|ref|ZP_00050210.1| COG1327: Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains [Magnetospirillum
           magnetotacticum MS-1]
          Length = 185

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 22/99 (22%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    I  A+ K             +   + ++ L     
Sbjct: 45  QLRELVVLKRSGKRVPFDRDKLQRSIDVALRK------------RLVDPERVERLVSGIT 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
            RL   +     V  E I + V   L   G   +   YV
Sbjct: 93  RRL--ESSGEGEVTSEAIGEAVMEGL--KGLDDVA--YV 125


>gi|212697477|ref|ZP_03305605.1| hypothetical protein ANHYDRO_02047 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675476|gb|EEB35083.1| hypothetical protein ANHYDRO_02047 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 130

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG +  FD  KISR+I  A  A  G     +  +  +  +L +       +   +A
Sbjct: 44  VKKRNGKIELFDVEKISRSIKNA--ARNGNIELNTSDISILKNDLEKIIKKNHHRILPTA 101

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                  I++ VE  L + G+ K+   Y  Y
Sbjct: 102 T------IKEYVENILEEDGYKKVLESYTSY 126



 Score = 39.1 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 37/150 (24%)

Query: 74  NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133
           +LT+  V            + IE+I DQ     M                 R+ V     
Sbjct: 3   DLTKLIVE-----YYQGKNLSIEEIADQ-----MD----------------RAKV----- 31

Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNM 189
               +  +  KL +   +G +  F+ +++   ++ A       L      I+ ++  K +
Sbjct: 32  -EVIENFLDNKLYVKKRNGKIELFDVEKISRSIKNAARNGNIELNTSDISILKNDLEKII 90

Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKV 219
                   L TA I      I +E  Y KV
Sbjct: 91  KKN-HHRILPTATIKEYVENILEEDGYKKV 119


>gi|170781780|ref|YP_001710112.1| transcriptional regulator NrdR [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|189030528|sp|B0RIK5|NRDR_CLAMS RecName: Full=Transcriptional repressor NrdR
 gi|169156348|emb|CAQ01496.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 157

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 6  DVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKA 53
           ++       P     F   +   + VIKRNG V  F   KI   + KA
Sbjct: 22 GLSIRRRRQCPECGRRFSTTETASLSVIKRNGVVEPFSREKIVTGVRKA 70


>gi|148273028|ref|YP_001222589.1| transcriptional regulator NrdR [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|189030527|sp|A5CS39|NRDR_CLAM3 RecName: Full=Transcriptional repressor NrdR
 gi|147830958|emb|CAN01903.1| putative transcriptional regulator [Clavibacter michiganensis
          subsp. michiganensis NCPPB 382]
          Length = 157

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 6  DVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKA 53
           ++       P     F   +   + VIKRNG V  F   KI   + KA
Sbjct: 22 GLSIRRRRQCPECGRRFSTTETASLSVIKRNGVVEPFSREKIVTGVRKA 70


>gi|317499778|ref|ZP_07958033.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316892944|gb|EFV15171.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 706

 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIK++G    F+  K+  A+ K A+ A+           ++ +  +      ++ Q  
Sbjct: 2   IKVIKKDGTKEEFNVQKVVVAVNKSAYRAL-------VTFTEEELDFICNFVTEKVEQMR 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           K  + +   D+ + VE +L Q+    + +    YR+ R+  +            +  +  
Sbjct: 55  KKEVTIS--DMHNVVEGALEQTNPL-VAKS---YRDYRNYKQDFVQMLDEVYKKSQSIMY 108

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           +   G   + N+           S L      ++ +E  K +Y    ++  +++
Sbjct: 109 I---GDKENSNTD----------SALVSTKRSLIFNELNKELYQKFFMTTEEIQ 149


>gi|256810871|ref|YP_003128240.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           fervens AG86]
 gi|256794071|gb|ACV24740.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           fervens AG86]
          Length = 764

 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 4/133 (3%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201
           A +  ++  +     F+  +L   +  +     D+    ++SE    +Y+G+S  +L+  
Sbjct: 11  ATEFYVIKRNRKKEKFDINKLAKSLINSGVNYNDLD--QIISEVTTKIYNGISTDELKD- 67

Query: 202 LIFSSRTLIEKEPNYAKVTARFL-LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
           ++++    I+K+          L +    +E      +K  KA   E             
Sbjct: 68  IVYNVLKKIDKDVAENYRRGVILKVRTSEKEFEPFNKEKIVKALIREAGADKETAQKIAD 127

Query: 261 EEGVKARLLHESM 273
           E   + + L    
Sbjct: 128 EVERELKKLKVKY 140


>gi|323465717|gb|ADX69404.1| Ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus H10]
          Length = 742

 Score = 45.2 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 18/93 (19%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K+   +              ++ + D    + E+   +L        
Sbjct: 24  IKRDGAKYPFEIFKLKMVL-------------HNLDLDDEADAVIEKIAAKLT-----GA 65

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
            V  ED+    + SL + G+    + Y+ YR++
Sbjct: 66  TVKAEDVAHAFKESLNELGYLDEAKAYIDYRKQ 98


>gi|256544583|ref|ZP_05471955.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399472|gb|EEU13077.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 130

 Score = 45.2 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V KRNG +  FD  KI R+I  A  A +G     +  +  +  +L +       +   +A
Sbjct: 44  VKKRNGKIELFDIDKILRSIKNA--ARDGNIDLNTSDISILKNDLMKMVEKNHKRIIPTA 101

Query: 91  LIVHIEDIQDQVECSLMQSGHHKIT---REYV 119
                  I++ VE  L + G+ K+    + Y+
Sbjct: 102 K------IKEYVENILYEDGYKKVLENYKSYI 127


>gi|291560161|emb|CBL38961.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SSC/2]
          Length = 706

 Score = 45.2 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIK++G    F+  K+  A+ K A+ A+           ++ +  +      ++ Q  
Sbjct: 2   IKVIKKDGTKEEFNVQKVVVAVNKSAYRAL-------VTFTEEELDFICNFVTEKVEQMR 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           K  + +   D+ + VE +L Q+    + +    YR+ R+  +            +  +  
Sbjct: 55  KKEVTIS--DMHNVVEGALEQTNPL-VAKS---YRDYRNYKQDFVQMLDEVYKKSQSIMY 108

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           +   G   + N+           S L      ++ +E  K +Y    ++  +++
Sbjct: 109 I---GDKENSNTD----------SALVSTKRSLIFNELNKELYQKFFMTTEEIQ 149


>gi|312137287|ref|YP_004004624.1| anaerobic ribonucleoside-triphosphate reductase [Methanothermus
           fervidus DSM 2088]
 gi|311225006|gb|ADP77862.1| anaerobic ribonucleoside-triphosphate reductase [Methanothermus
           fervidus DSM 2088]
          Length = 764

 Score = 45.2 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 64/178 (35%), Gaps = 10/178 (5%)

Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190
            Q   K   P    + I    G    F   ++   +      L    +K + S+   N Y
Sbjct: 1   MQKDVKMYVPSKAGITIKKSSGIKEKFRPGKIIRSLLNIGVSLSM--AKKIASKVASNAY 58

Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250
           DG++ S+++  +    + + EK  +         +   R ++     KK ++A   E   
Sbjct: 59  DGMTTSEIKMLVYNELQKIDEKAADEYLAANELKVRTSRDKIEKFDKKKIERALIVETGA 118

Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN-DLKYERDFAFEYLGLQILYDRYFL 307
             P++  + I     A  + + +    + ++ +  ++   +      GL+ L  R+  
Sbjct: 119 --PKHIAKKI-----ASEIWKELKKLRIDHVTSPMIREFVNVKLVEYGLEDLRKRHTR 169


>gi|4585801|emb|CAB40907.1| anaerobic ribonucleotide reductase [Pseudomonas stutzeri]
          Length = 63

 Score = 45.2 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72
             +L     E  K V V KR+G + +F+  KI RAI+ A  A     A  +  + + +
Sbjct: 2  VMEALMPRQAELAKPVSVRKRDGRLAAFEVDKIERAIVAAGAATGEFEAPVAQPLAEAV 60


>gi|295398082|ref|ZP_06808131.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aerococcus viridans ATCC 11563]
 gi|294973601|gb|EFG49379.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Aerococcus viridans ATCC 11563]
          Length = 756

 Score = 45.2 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+V KR+G   +FD  K+ ++I+KA  + + + A  ++ +  ++ NL +          
Sbjct: 16  QVKVHKRDGRTVAFDVDKLQQSIIKASQSKQAETADINLILHQVLANLAD-IQKANPNDA 74

Query: 88  KSALIVH---IEDIQDQ 101
                +H   ++ +QDQ
Sbjct: 75  IEVTTIHHQLVQVLQDQ 91



 Score = 38.3 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVLSETYK 187
           A             ++K+   DG  ++F+  +L+  + +A      +     ++L +   
Sbjct: 2   AQAVQEILHLDSFDQVKVHKRDGRTVAFDVDKLQQSIIKASQSKQAETADINLILHQVLA 61

Query: 188 NM--------YDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222
           N+         D +  + +   L+   +           +  R
Sbjct: 62  NLADIQKANPNDAIEVTTIHHQLVQVLQDQNFNHIAETYLANR 104


>gi|323486663|ref|ZP_08091984.1| hypothetical protein HMPREF9474_03735 [Clostridium symbiosum
           WAL-14163]
 gi|323692191|ref|ZP_08106434.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
 gi|323400044|gb|EGA92421.1| hypothetical protein HMPREF9474_03735 [Clostridium symbiosum
           WAL-14163]
 gi|323503765|gb|EGB19584.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium
           symbiosum WAL-14673]
          Length = 710

 Score = 45.2 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT--EQTVTRLL 84
             ++VIK++G    F+  K+  A+ K+         +    ++     +T   + V   +
Sbjct: 4   SEIKVIKKDGTREDFNIQKVVVAVHKS---------AERAMIRFSQDEITFICRFVEEKV 54

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           +  +   I  I  + + VE +L +     + + Y  YR
Sbjct: 55  EKLEDNRIP-IFQMHNLVEGALERVNP-AVAKSYRDYR 90


>gi|195119231|ref|XP_002004135.1| GI18283 [Drosophila mojavensis]
 gi|193914710|gb|EDW13577.1| GI18283 [Drosophila mojavensis]
          Length = 68

 Score = 45.2 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSE 184
           KL ++  DG     +  ++   +++ C  L    V    ++S 
Sbjct: 11  KLYVIKRDGRKEEIHFDKITSRIQKLCYNLNMDFVDPVSIMSN 53


>gi|167768131|ref|ZP_02440184.1| hypothetical protein CLOSS21_02686 [Clostridium sp. SS2/1]
 gi|167709655|gb|EDS20234.1| hypothetical protein CLOSS21_02686 [Clostridium sp. SS2/1]
          Length = 716

 Score = 45.2 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIK++G    F+  K+  A+ K A+ A+           ++ +  +      ++ Q  
Sbjct: 12  IKVIKKDGTKEEFNVQKVVVAVNKSAYRAL-------VTFTEEELDFICNFVTEKVEQMR 64

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
           K  + +   D+ + VE +L Q+    + +    YR+ R+  +            +  +  
Sbjct: 65  KKEVTIS--DMHNVVEGALEQTNPL-VAKS---YRDYRNYKQDFVQMLDEVYKKSQSIMY 118

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           +   G   + N+           S L      ++ +E  K +Y    ++  +++
Sbjct: 119 I---GDKENSNTD----------SALVSTKRSLIFNELNKELYQKFFMTTEEIQ 159


>gi|45357790|ref|NP_987347.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis S2]
 gi|45047350|emb|CAF29783.1| Anaerobic Ribonucleoside-triphosphate reductase [Methanococcus
           maripaludis S2]
          Length = 770

 Score = 45.2 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           K+ I+   G   +FN  +L   +  +    +++    +LSE Y  +Y+G+S  DL++ L
Sbjct: 11  KINIVKRSGNEETFNINKLVKSLLNSGVDYENID--EILSEIYGKVYNGMSTDDLKSIL 67


>gi|227889023|ref|ZP_04006828.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850252|gb|EEJ60338.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 736

 Score = 45.2 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI   +            S  +   +         +  +LQ    A 
Sbjct: 21  IKRDGSIYPFALYKIEMVL-----------DSLHLTEHE------ADILPAILQKLNGAK 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               E I D    +L++ G       YV YR      R  + + K       +L +++  
Sbjct: 64  QTSTEKIADAFVQTLIELGFSDEANAYVDYR------REDEVNFKKQTETTNRLGRLIHH 117

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 118 DPTIVNENANKDSRVFS 134


>gi|268318702|ref|YP_003292358.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii FI9785]
 gi|262397077|emb|CAX66091.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           johnsonii FI9785]
          Length = 736

 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI   +            S  +   +         +  +LQ    A 
Sbjct: 21  IKRDGSIYPFALYKIEMVL-----------DSLHLTEHE------ADILPAILQKLNGAK 63

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               E I D    +L++ G       YV YR      R  + + K       +L +++  
Sbjct: 64  QTSTERIADAFVQTLIELGFSDEANAYVDYR------REDEVNFKKQTETTNRLGRLIHH 117

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 118 DPTIVNENANKDSRVFS 134


>gi|323514080|gb|ADX89528.1| anaerobic nucleoside diphosphate reductase (Enterobacteria phage
           Felix 01) [Vibrio phage ICP1_2004_A]
          Length = 721

 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + ++V+KR+G    FD  KI  A+ K+  A         + +  +   + ++        
Sbjct: 25  EKLKVVKRDGIKQDFDIKKIFNAVSKS--ATRCNITLSEMDLVKLEFLILDEVC------ 76

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                 + ++++ + VE SL +    ++   Y  YR
Sbjct: 77  ----GDIEVKELHNTVEKSLSRINP-EVADSYRQYR 107



 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESDL 198
            KLK++  DG    F+ K++   V ++ +     L ++    +       +   +   +L
Sbjct: 25  EKLKVVKRDGIKQDFDIKKIFNAVSKSATRCNITLSEMDLVKLEFLILDEVCGDIEVKEL 84

Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253
              +     +L    P    V   +   +  ++          K  +     LY 
Sbjct: 85  HNTVEK---SLSRINPE---VADSYRQYRNYKQ---DFVGLWDKIYNKTKDVLYA 130


>gi|254469258|ref|ZP_05082663.1| transcriptional regulator NrdR [Pseudovibrio sp. JE062]
 gi|211961093|gb|EEA96288.1| transcriptional regulator NrdR [Pseudovibrio sp. JE062]
          Length = 149

 Score = 45.2 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+         +V      R +   + I+ +    V +L 
Sbjct: 33  QLRELTVIKRNGRRVPFDREKL-------MRSVLIATRKRPVE-PERIERMVSGLVRQLE 84

Query: 85  QHNKSALIVHIEDIQDQVECSL 106
              +S ++   EDI   V   L
Sbjct: 85  SSGESDVVA--EDIGHLVMEGL 104


>gi|253580139|ref|ZP_04857406.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848658|gb|EES76621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 741

 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G    F+  KI  A+ K   +      + S + ++ I    E+    L ++    
Sbjct: 34  VIKKDGTREEFNSQKIVAAVNK---SAARILYTFSDKEKEFICQFAEEHAEALGKNE--- 87

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
             + I+++ + VE +L +     + + Y  YR
Sbjct: 88  --IEIQEMHNIVEGALERVNP-AVAKSYRDYR 116


>gi|294102417|ref|YP_003554275.1| ATP-cone domain protein [Aminobacterium colombiense DSM 12261]
 gi|293617397|gb|ADE57551.1| ATP-cone domain protein [Aminobacterium colombiense DSM 12261]
          Length = 153

 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 18/104 (17%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           E+ + ++VIK+NG    FD  KI+R I KA    E    S      + I+ +  +     
Sbjct: 45  EEKRTLRVIKKNGSREIFDREKITRGISKA---CEKLPVSL-----EQIEEVASRIEESF 96

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
              +     + +  I ++V   L     +K+   YV    +YRE
Sbjct: 97  --RSGGYGEIPVSLIGERVMEEL--KQLNKVA--YVRFASVYRE 134



 Score = 41.4 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187
                   L+++  +G+   F+ +++   + +AC  L  VS + +     +
Sbjct: 42  EKVEEKRTLRVIKKNGSREIFDREKITRGISKACEKLP-VSLEQIEEVASR 91


>gi|52551157|gb|AAU84577.1| putative ribonucleotide reductase [uncultured organism BAC21E04]
          Length = 471

 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 18/257 (7%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             SC +    D + G   I  + +  +   +Y  G+    + +R  G+        + G 
Sbjct: 24  PVSCTIFKPTDSMEGPNGIEASWRFVSHALRYGAGVAVHLSGIRSAGSDNGR-GLIASGP 82

Query: 425 IPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + F K+ +     + +GG  K GAV  +L+  H D+ EF++  +N     +R  ++    
Sbjct: 83  VSFGKIYSCLNEQLRRGGIYKNGAVVLHLDLSHPDILEFIETPRNELPWAKRCINITQEM 142

Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543
           W  D   + V         +  ++      + +     Y N         ++VF +    
Sbjct: 143 W--DESSEEVKDAVL-AGIARGDIWLAKIRWNQHGRRIYANVC-------LEVFLESRGT 192

Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603
            L   +     E       F D             V   +   E     +  +  +  LG
Sbjct: 193 CLLEHINLAACEVDEIPQAFVDGMTELIELHSNTNV---DSSGEYLAPENDRQVGLGMLG 249

Query: 604 SINLLAHFANNQFDYDK 620
             NLLA       ++  
Sbjct: 250 LANLLALEGVTYKEFAD 266


>gi|332981324|ref|YP_004462765.1| ATP-cone domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332699002|gb|AEE95943.1| ATP-cone domain protein [Mahella australiensis 50-1 BON]
          Length = 156

 Score = 44.8 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 115 TREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS--- 171
             EY + R  R  V   +  +  +      L ++  DG    F+  +++  + +AC    
Sbjct: 19  AEEYTIIRRRRECVECGKRFTTYEKVERIPLMVIKKDGRREPFDIDKIKNGIIKACEKRP 78

Query: 172 ----GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
                ++DV    +  + Y ++   ++  ++   ++   + L   E  Y +  +
Sbjct: 79  VSMDDIEDV-VSDIEKQVYTDVKSEITSHEIGEMVMKHLKDL--DEVAYVRFAS 129



 Score = 38.3 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 18/99 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G    FD  KI   I+KA          +     D I+++      ++    KS 
Sbjct: 51  VIKKDGRREPFDIDKIKNGIIKA--------CEKRPVSMDDIEDVVSDIEKQVYTDVKSE 102

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYV----LYREER 125
           +  H  +I + V   L      ++   YV    +YR+ R
Sbjct: 103 ITSH--EIGEMVMKHL--KDLDEVA--YVRFASVYRQFR 135


>gi|170077577|ref|YP_001734215.1| transcriptional regulator NrdR [Synechococcus sp. PCC 7002]
 gi|226736147|sp|B1XJ17|NRDR_SYNP2 RecName: Full=Transcriptional repressor NrdR
 gi|169885246|gb|ACA98959.1| conserved hypothetical protein TIGR00244, ATP cone domain
           [Synechococcus sp. PCC 7002]
          Length = 181

 Score = 44.8 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 20/100 (20%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIKRNG   +FD SKI R +++A          ++  +   ++ + E+   +L Q  K
Sbjct: 49  ISVIKRNGQSEAFDRSKILRGMVRA--------CEKTTVLPSTLEAIAEEIEAQLQQKPK 100

Query: 89  SALIVHIEDIQDQVECSLMQ-SGHHKITREYV----LYRE 123
               +    I D V   L +     ++   YV    +YR+
Sbjct: 101 --RSITTAQIGDLV---LHRLRQESEVA--YVRFASVYRQ 133


>gi|304314636|ref|YP_003849783.1| hypothetical protein MTBMA_c08750 [Methanothermobacter
          marburgensis str. Marburg]
 gi|302588095|gb|ADL58470.1| conserved hypothetical protein [Methanothermobacter marburgensis
          str. Marburg]
          Length = 90

 Score = 44.8 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          + VIKR G   ++DPSKI  ++ KA +             ++II+ + +    ++   
Sbjct: 1  MNVIKRRGSREAYDPSKIRASLEKAAI----DAGYSPEEKREIIEKVYQTVTEKIKGE 54



 Score = 42.5 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYDGLS-ESDLETA 201
           + ++   G+  +++  ++   +E+A   +G      + ++ + Y+ + + +  E +++T 
Sbjct: 1   MNVIKRRGSREAYDPSKIRASLEKAAIDAGYSPEEKREIIEKVYQTVTEKIKGEEEIKTD 60

Query: 202 LIFSSRTLIEKEPNYAKVT 220
            I     L E +     + 
Sbjct: 61  TIRMCL-LTELDKCEPYIA 78


>gi|328464507|gb|EGF35886.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           helveticus MTCC 5463]
          Length = 739

 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 18/93 (19%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K+   +              ++ + D    + E+   +L        
Sbjct: 21  IKRDGAKYPFEIFKLKMVL-------------HNLDLDDEADAVIEKIAAKLT-----GA 62

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
            V  ED+    + SL + G+    + YV YR++
Sbjct: 63  TVKAEDVAHAFKESLNELGYLDEAKAYVDYRKQ 95


>gi|260102171|ref|ZP_05752408.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus DSM 20075]
 gi|260084061|gb|EEW68181.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus DSM 20075]
          Length = 741

 Score = 44.8 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 18/93 (19%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K+   +              ++ + D    + E+   +L        
Sbjct: 23  IKRDGAKYPFEIFKLKMVL-------------HNLDLDDEADAVIEKIAAKLT-----GA 64

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
            V  ED+    + SL + G+    + YV YR++
Sbjct: 65  TVKAEDVAHAFKESLNELGYLDEAKAYVDYRKQ 97


>gi|194762326|ref|XP_001963301.1| GF14010 [Drosophila ananassae]
 gi|190616998|gb|EDV32522.1| GF14010 [Drosophila ananassae]
          Length = 676

 Score = 44.8 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 33/384 (8%), Positives = 81/384 (21%), Gaps = 61/384 (15%)

Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD---MNTANWIPDLFMKRVT 494
                  +G     ++  +  +E+F +          +        T     D ++K   
Sbjct: 39  EPFFVNTEGCRIIAMDVMNHQIEKFTNWEWKHPRFYLKCPKTTWFRTEMANGDWYLKLSR 98

Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE-----------IKVFRKISAV 543
                   +          Y   F+I +  + +   R              K  +++   
Sbjct: 99  DIGEILKENKLTNDWQITCYWLNFKIRWRWHSKLTHRTRFYLEFPYVLKVPKGVKQLRLQ 158

Query: 544 ALWRKMLTMLFETGH---------------PWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588
            +  +    L+   H               P + F D  + R        V    + +  
Sbjct: 159 CVETETNKTLYNDAHFFIQPPPEKLLRKAPPRLQFWDKIDERKTNMPPISVMILGMDSVS 218

Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKA 646
            LN   +          N+             +   + I     +            +  
Sbjct: 219 HLNFLRQMPKTAAYMRTNMSHVEFWGMNKIGVNTYPNLISLLTGLSTQEAYKLILKDKYM 278

Query: 647 KKSNHTHRAIGLGLMGFQ----------SALHLLHIPYASPEA--VEIADESM------- 687
            +     +                               + +    +   E         
Sbjct: 279 DRLPLIWKDFKKAGYNTSFGEDHARLSVFYFDQKGFENETTDHNLHDFMAELFLIRENSS 338

Query: 688 ---------EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738
                           +  +  L      Y  F    W  G+    +   L + R +  +
Sbjct: 339 LPLAYCVGERTFLDVLMEMTDRLLPHYQRYPFFSFYWWSNGLHEFFNAPRLMDDRFQRLL 398

Query: 739 N--RTSRLPWDELKKRVKTIGMRN 760
                S +  + +   +   G+R 
Sbjct: 399 RSLDDSGVTNNTIIFFMSDHGLRW 422


>gi|62996800|gb|AAY24450.1| ribonucleoside-diphosphate reductase large chain precursor
           [Costelytra zealandica iridescent virus]
          Length = 378

 Score = 44.5 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 34/150 (22%)

Query: 457 IDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRV-----------TQNAGWTLF 502
            ++  FL+ R+     GD   +  +++    IPD FM+++            +N      
Sbjct: 1   PEIISFLNTRRVSGFGGDYNYKLMNIHNGVNIPDNFMRKIWFISTVAPILKQENGKRMKM 60

Query: 503 SPDEVSDLHDLYGKEFE------------------IAYENYERQADRGEIKVFRKISAVA 544
             + +    +      E                     +         E+K    ISA  
Sbjct: 61  LEEAIKTFQNSDKWVDENNLDLNKLTIENAQTYIKEMDKFDLTDPHNKEVK--ETISATE 118

Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574
           LW ++L    E G P+  F D  N + P+ 
Sbjct: 119 LWERILVTRAECGEPYCHFIDTSNRKLPEF 148


>gi|316934112|ref|YP_004109094.1| ATP-cone domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601826|gb|ADU44361.1| ATP-cone domain protein [Rhodopseudomonas palustris DX-1]
          Length = 160

 Score = 44.5 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIKRNG    FD  K+ R++              S+R + +     EQ V+ ++
Sbjct: 45  QLRELIVIKRNGRRVPFDRDKLVRSVQ------------ISLRKRPVDPERVEQMVSAIV 92

Query: 85  QHNKSALIVHI 95
           +  +S     I
Sbjct: 93  RELESGGEAEI 103


>gi|11528328|gb|AAG37223.1|AF298223_1 anaerobic nucleoside-triphosphate reductase [Methanococcus
           maripaludis]
          Length = 307

 Score = 44.5 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           K+ I+   G   +FN  +L   +  +    +++    +LSE Y  +Y+G+S  DL++ L
Sbjct: 11  KINIVKRSGNEETFNINKLVKSLLNSGVDYENID--EILSEIYGKVYNGMSTDDLKSIL 67


>gi|310005853|gb|ADP00238.1| ribonucleotide reductase domain-containing protein [Cyanophage
           Syn26]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 110/384 (28%), Gaps = 38/384 (9%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH--GTNGKSQ 422
             SC +  V D + G   I  + +  +   ++  G+    + +R  G   +       + 
Sbjct: 28  PVSCTIFVVEDSMEGPNGIEASWRFVSHALRFGAGVAVHLSKLRPAGTKTNKGPDTLVAS 87

Query: 423 GVIPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G + F K+ +     + +GG  + GA   +L+  H D+ +F+ +++      +R  D+  
Sbjct: 88  GPVSFAKIYSTLNEILRRGGTYRNGACVLHLDIDHTDIIDFVQVQRQELPWVKRCVDLTQ 147

Query: 482 ANWI-----PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
           + W+         + R        L      +D + ++       Y              
Sbjct: 148 SGWLNSSAKTKEAIIRGIARGDIWLNKIKYDNDGNRIWSNVCLEVYLPS----------- 196

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
                   L + +       G      ++  +          +   +   E        +
Sbjct: 197 ----RGTCLLQHLNMSACRIGDIRQGMREGMSDLCKLHSRTGI---DKSGEYLAPDIDRQ 249

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV------RVLDNVIDINCHTIEKAKKSN 650
                LG  N LA+      ++ K       A        +    + +         + N
Sbjct: 250 VGFGLLGLANFLANNNITYAEFGKALEATNDAQPYEGYAGLAARELFLGIQEAANVAREN 309

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  RA  +      S        +      EIA      +   +    VE  Q  G    
Sbjct: 310 NMVRAFAIAPTASCSY--RSRDLHGYTATPEIAPPIARTVDRDSGEFGVEQVQ-YGNVEI 366

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRD 734
                WD      D I ++ +   
Sbjct: 367 ASEVGWDNYKKVADQIMIMLDRTG 390


>gi|536840|gb|AAA85331.1| ribonucleotide reductase large subunit [Gallid herpesvirus 1]
          Length = 64

 Score = 44.5 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNA 497
           N    R   +C Y E WH D  + L +R ++  ++  R  ++ TA W+PDLFMKR+ Q  
Sbjct: 1   NGAANRPTGLCVYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFTAIWMPDLFMKRLQQPG 60


>gi|167748122|ref|ZP_02420249.1| hypothetical protein ANACAC_02866 [Anaerostipes caccae DSM 14662]
 gi|167652114|gb|EDR96243.1| hypothetical protein ANACAC_02866 [Anaerostipes caccae DSM 14662]
          Length = 722

 Score = 44.5 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 14/112 (12%)

Query: 15  FPSLAY---PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQD 70
            P               ++V+K++G    F+  K+  A+ K A+ A+           +D
Sbjct: 1   MPQAGRCSGNSQGGESMIRVVKKDGTKEDFNIQKVVTAVNKSAYRALVKFT-------ED 53

Query: 71  IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            +  +      R+ + NKS   VHI ++ + VE +L +     + + Y  YR
Sbjct: 54  ELDEICRFVNGRVDELNKSE--VHITEMHNVVEGALERVNP-GVAKSYRDYR 102


>gi|222475862|ref|YP_002564383.1| ATP-cone domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|254768014|sp|B9LWA7|NRDR_HALLT RecName: Full=Transcriptional repressor NrdR
 gi|222454233|gb|ACM58497.1| ATP-cone domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 162

 Score = 44.5 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           R  R   R +   +  + P    L++   +GT+  FN  +L   +E A      V  + V
Sbjct: 26  RRRRECQRCSFRFTTYERPEWDSLQVKKRNGTIEPFNRTKLRAGIERA------VEKRDV 79

Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLI 210
              T   + D +  +  +      S +LI
Sbjct: 80  SETTVTTLVDDIESALQDRETRLVSSSLI 108



 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +QV KRNG +  F+ +K+   I +A   VE +  S +      +  L +   + L   
Sbjct: 48 SLQVKKRNGTIEPFNRTKLRAGIERA---VEKRDVSET-----TVTTLVDDIESALQDR 98


>gi|261402257|ref|YP_003246481.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           vulcanius M7]
 gi|261369250|gb|ACX71999.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           vulcanius M7]
          Length = 764

 Score = 44.5 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           KL+I+  DG    FN  +L   +    SG+     + +LSE Y  +Y+G+S  +L+  +
Sbjct: 13  KLQIIKRDGREEKFNINKLVKSLIN--SGVNYGDLENILSEIYTKVYNGMSTEELKNIV 69


>gi|170741292|ref|YP_001769947.1| transcriptional regulator NrdR [Methylobacterium sp. 4-46]
 gi|226733008|sp|B0UML4|NRDR_METS4 RecName: Full=Transcriptional repressor NrdR
 gi|168195566|gb|ACA17513.1| ATP-cone domain protein [Methylobacterium sp. 4-46]
          Length = 186

 Score = 44.5 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 38/142 (26%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS D +        P     F      +++ + V+KR+G    FD  K    I  A+ K
Sbjct: 17  RPSDDASAIRRRRICPDCGGRFTTFERVQLRDLTVVKRSGRRVPFDRDKLQRSIDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI--EDIQDQVECSLMQSG 110
               VE           D ++ L    V+ + +  +S     +  E I + V   L    
Sbjct: 77  --RPVEA----------DRVERL----VSGIARQLESGGEAEVSSEAIGELVMEGL--KA 118

Query: 111 HHKITREYV----LY---REER 125
              +   YV    +Y   RE R
Sbjct: 119 LDDVA--YVRFASVYKNFREAR 138


>gi|184201115|ref|YP_001855322.1| hypothetical protein KRH_14690 [Kocuria rhizophila DC2201]
 gi|183581345|dbj|BAG29816.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 298

 Score = 44.5 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVL 182
           R   R  +   +        + ++   G    F+ +++   V +AC G  + +    ++ 
Sbjct: 26  RRRRRCTECGRRFSTLETTSISVIKRSGVTEPFDRQKIVNGVRKACQGRPVSEDDLAMLA 85

Query: 183 SETYKNM 189
            E  +++
Sbjct: 86  QEVEESI 92



 Score = 42.5 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
              + VIKR+G    FD  KI   + KA               +D +  L ++    +  
Sbjct: 43  TTSISVIKRSGVTEPFDRQKIVNGVRKA--------CQGRPVSEDDLAMLAQEVEESIRA 94

Query: 86  HNKSALIVH 94
              + +  H
Sbjct: 95  SGSAEVEAH 103


>gi|289582312|ref|YP_003480778.1| ATP-cone domain protein [Natrialba magadii ATCC 43099]
 gi|289531865|gb|ADD06216.1| ATP-cone domain protein [Natrialba magadii ATCC 43099]
          Length = 176

 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           +QV KR+G +  FD +K+   I +A   VE +  + +      + +L +Q    L + 
Sbjct: 48 SLQVKKRDGALEPFDRAKLRAGIERA---VEKRDVTDT-----TVTSLIDQVEATLQER 98


>gi|61806420|ref|YP_214197.1| ribonucleotide reductase domain [Prochlorococcus phage P-SSP7]
 gi|61374345|gb|AAX44199.1| ribonucleotide reductase domain [Prochlorococcus phage P-SSP7]
 gi|265525457|gb|ACY76223.1| ribonucleotide reductase domain-containing protein [Prochlorococcus
           phage P-SSP7]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 108/384 (28%), Gaps = 38/384 (9%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH--GTNGKSQ 422
             SC +  V D + G   I  + +  +   ++  G+    + +R  G   +       + 
Sbjct: 28  PVSCTIFVVEDSMEGKDGIEASWRFVSHALRFGAGVAVHLSKLRPAGTRTNKGPDTLVAS 87

Query: 423 GVIPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481
           G + F K+ +     + +GG  + GA   +L+  H D+ +F+ +++      +R  D+  
Sbjct: 88  GPVSFAKIYSTLNEILRRGGTYRNGACVLHLDINHPDIIDFVQVKRQELPWVKRCVDLTR 147

Query: 482 ANWI-----PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536
             W          + +        L      +D + +Y       Y              
Sbjct: 148 EQWSNTETRTKEAIIQGIARGDIWLNKIKYDNDGNRIYSNVCLEVYLPS----------- 196

Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596
                   L + +       G      ++  +          +  S    E        +
Sbjct: 197 ----RGTCLLQHLNMSACRIGDIREGMREGMSDLCKLHSRTGIEESG---EYLAPDIDRQ 249

Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV------RVLDNVIDINCHTIEKAKKSN 650
                LG  N LA+      ++ K       A        +    + +         + N
Sbjct: 250 VGFGLLGLANFLANNKITYAEFGKALRATNDAQPYEGYAGLAARELYLGIQEAANVAREN 309

Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710
           +  RA  +      S        +      EIA      +   +    VE  +  G    
Sbjct: 310 NMVRAFAIAPTASCSY--RSRDLHGYTATPEIAPPIARTVDRDSGEFGVEQVK-YGNVEI 366

Query: 711 FKGSLWDQGVFPIDSIGLLAEVRD 734
                WD      D I ++ E   
Sbjct: 367 ASEVGWDAYKLVADQIMIMLERTG 390


>gi|148544541|ref|YP_001271911.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri DSM 20016]
 gi|184153904|ref|YP_001842245.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri JCM 1112]
 gi|227363031|ref|ZP_03847168.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri MM2-3]
 gi|325682862|ref|ZP_08162378.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri MM4-1A]
 gi|148531575|gb|ABQ83574.1| ribonucleoside-triphosphate reductase class III catalytic subunit /
           ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri DSM 20016]
 gi|183225248|dbj|BAG25765.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri JCM 1112]
 gi|227071915|gb|EEI10201.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri MM2-3]
 gi|324977212|gb|EGC14163.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri MM4-1A]
          Length = 744

 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +  VQV+KR+G VT F   KI+  +  A  A E                  +     L
Sbjct: 12  QSLTSVQVVKRDGTVTPFYSYKINLVL-NALNADEQTS---------------QSVYVTL 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           L    +   V  + I D     L+ + H ++ + Y  YR+        ++ +++  P   
Sbjct: 56  LDALLNQTTVTTKKIADLFVQGLVNANHEELAKVYRDYRQH-----DEEAFAEATNPQNK 110

Query: 144 KLKIMMDDGTLISFNSKR 161
             ++   +  ++  N+ +
Sbjct: 111 LEQLFDRNSRIVHENANK 128


>gi|227543860|ref|ZP_03973909.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri CF48-3A]
 gi|300909603|ref|ZP_07127064.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri SD2112]
 gi|227186157|gb|EEI66228.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           reuteri CF48-3A]
 gi|300893468|gb|EFK86827.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus reuteri SD2112]
          Length = 744

 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +  VQV+KR+G VT F   KI+  +  A  A E                  +     L
Sbjct: 12  QSLTSVQVVKRDGTVTPFYSYKINLVL-NALNADEQTS---------------QSVYVTL 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           L    +   V  + I D     L+ + H ++ + Y  YR+        ++ +++  P   
Sbjct: 56  LDALLNQTTVTTKKIADLFVQGLVNANHEELAKVYRDYRQH-----DEEAFAEATNPQNK 110

Query: 144 KLKIMMDDGTLISFNSKR 161
             ++   +  ++  N+ +
Sbjct: 111 LEQLFDRNSRIVHENANK 128


>gi|227536870|ref|ZP_03966919.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243297|gb|EEI93312.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 290

 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           K+    G L+ F    L+  +    SG  D   + V     +N+YDG+S  +L    
Sbjct: 11  KVKKHSGELVPFEPNSLKQSLSR--SGASDQDVENVFQSIQQNLYDGISTKELYKMA 65


>gi|194466729|ref|ZP_03072716.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri 100-23]
 gi|194453765|gb|EDX42662.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           reuteri 100-23]
          Length = 744

 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           + +  VQV+KR+G VT F   KI+  +  A  A E                  +     L
Sbjct: 12  QSLTSVQVVKRDGTVTPFYSYKINLVL-NALNADEQTS---------------QSVYVTL 55

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143
           L    +   V  + I D     L+ + H ++ + Y  YR+        ++ +++  P   
Sbjct: 56  LDALLNQTTVTTKKIADLFVQGLVNANHEELAKVYRDYRQH-----DEEAFAEATNPQNK 110

Query: 144 KLKIMMDDGTLISFNSKR 161
             ++   +  ++  N+ +
Sbjct: 111 LEQLFDRNSRIVHENANK 128


>gi|317472347|ref|ZP_07931674.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900189|gb|EFV22176.1| anaerobic ribonucleoside-triphosphate reductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 706

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++V+K++G    F+  K+  A+ K A+ A+           +D +  +      R+ + N
Sbjct: 2   IRVVKKDGTKEDFNIQKVVTAVNKSAYRALVKFT-------EDELDEICRFVNGRVDELN 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           KS   VHI ++ + VE +L +     + + Y  YR
Sbjct: 55  KSE--VHITEMHNVVEGALERVNP-GVAKSYRDYR 86


>gi|283796125|ref|ZP_06345278.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
 gi|291076340|gb|EFE13704.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           M62/1]
 gi|295092236|emb|CBK78343.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium cf.
           saccharolyticum K10]
          Length = 710

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           K   ++VIK++G    F+  K+  A+ K   + E      S    + I    E+    L 
Sbjct: 2   KCSEIKVIKKDGTREDFNVQKVVVAVNK---SAERAMIQFSQAELNFICQFVEEKAEAL- 57

Query: 85  QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144
                   + I  + + VE +L +     + +    YR+ R+  +            +  
Sbjct: 58  ----GTAEIPIAQMHNLVEGALERVNPL-VAKS---YRDYRNYKQDFVQMLDEVYKKSQS 109

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           +  +   G   + N+           S L      ++ +E  K +Y    ++  +L+
Sbjct: 110 IMYI---GDKENSNTD----------SALVSTKRSLIFNELNKELYKKFFMTVEELQ 153


>gi|154151054|ref|YP_001404672.1| hypothetical protein Mboo_1511 [Candidatus Methanoregula boonei
           6A8]
 gi|153999606|gb|ABS56029.1| conserved hypothetical protein [Methanoregula boonei 6A8]
          Length = 84

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
            + +   DG    F ++++  +V    SG     ++ V  +  KN  DG++  +L+    
Sbjct: 1   MIMVKKRDGRKEPFVTEKI--VVSAIKSGAPVEVARAVALDIEKNATDGIATKELKK--- 55

Query: 204 FSSRTLIEKEPNYA 217
                L  K P + 
Sbjct: 56  KVLGVLKAKNPEWE 69


>gi|294791090|ref|ZP_06756248.1| transcriptional regulator NrdR [Scardovia inopinata F0304]
 gi|294458987|gb|EFG27340.1| transcriptional regulator NrdR [Scardovia inopinata F0304]
          Length = 161

 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVL 182
           R      + H +     A  L I+   G    F+ K++   V  AC G  + D     + 
Sbjct: 26  RRRRECLKCHKRFTTQEAVVLSIVKRSGVTEPFDRKKVISGVSRACRGRNISDEDLNRLG 85

Query: 183 SETYKNMYD----GLSESDLETALIFSSRTL 209
               +N+       +   ++  A++   R L
Sbjct: 86  QRVEENLRSRGRAEIKSEEVGKAILQPLRDL 116


>gi|254431706|ref|ZP_05045409.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Cyanobium sp. PCC 7001]
 gi|197626159|gb|EDY38718.1| ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
           [Cyanobium sp. PCC 7001]
          Length = 805

 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 75/273 (27%), Gaps = 14/273 (5%)

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +        +VF    +  +  + +T  F++G   I F      RS   +  ++ +  L 
Sbjct: 350 DALRMANHTRVFHTRPSREVVLEAVTKQFQSGEGAIQFAPEAIARS---NADLLPTPELR 406

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            E            C+ G     A    +    +      R     L+   +I       
Sbjct: 407 QEFIG-------IYCDQGREQAAAWLQLHHPGLEADELEHRLGRYGLNPCGEILGADFHC 459

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                H ++         + A     I  A         E             V      
Sbjct: 460 NLAEIHLNQIHPTDFQAQEDAFRAGGIAVACLLNHRFEVERYRQSRAWDPIVGVSFTGLF 519

Query: 706 GAYSSFKGSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
             +    G+ W +      P    G     R+   ++R   +  + + +     G+R  N
Sbjct: 520 DFFVHAFGTPWLRWWEAGRPDSDEGRAFRAREADYLSRWKAIVHEAVWEYCDRHGIRRPN 579

Query: 763 -CMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            C  + P  T + + G S    P     +++  
Sbjct: 580 RCTTVQPAGTKSLLTGASPGWHPPKAQRFIRRI 612


>gi|300865635|ref|ZP_07110408.1| Transcriptional repressor nrdR [Oscillatoria sp. PCC 6506]
 gi|300336362|emb|CBN55558.1| Transcriptional repressor nrdR [Oscillatoria sp. PCC 6506]
          Length = 187

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACS--GLQDVSSKIVLSETYKNM----YDGLSESDL 198
           + ++  DG   SF+  +L   +  AC   G+     + +  E    +       ++ SD+
Sbjct: 49  ITVIKRDGKRESFDKSKLLRGIIRACEKTGITAAEVEKIADEIESELQGRSLREVASSDI 108

Query: 199 ETALIFSSRTLIE 211
              ++   R L E
Sbjct: 109 GELVLKQLRRLSE 121



 Score = 41.4 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 26/101 (25%)

Query: 31  VIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           VIKR+G   SFD SK    I RA  K      G  A+        ++ + ++  + L   
Sbjct: 51  VIKRDGKRESFDKSKLLRGIIRACEK-----TGITAA-------EVEKIADEIESELQGR 98

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
           +   +     DI + V   L +    ++   YV    +YR+
Sbjct: 99  SLREVASS--DIGELVLKQLRR--LSEVA--YVRFASVYRQ 133


>gi|329113507|ref|ZP_08242288.1| Transcriptional repressor NrdR [Acetobacter pomorum DM001]
 gi|326697332|gb|EGE48992.1| Transcriptional repressor NrdR [Acetobacter pomorum DM001]
          Length = 158

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+K +G    FD  KI+R+I  A             R + + +   EQ VT ++
Sbjct: 45  QLRELVVVKNDGRRAPFDREKIARSIRIAL------------RKRPVSEEQIEQIVTGIV 92

Query: 85  QHNKSALIVHI 95
           +  +      +
Sbjct: 93  RQLEGNGETEV 103


>gi|258542346|ref|YP_003187779.1| hypothetical protein APA01_12530 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633424|dbj|BAH99399.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256636483|dbj|BAI02452.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256639536|dbj|BAI05498.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256642592|dbj|BAI08547.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256645647|dbj|BAI11595.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256648700|dbj|BAI14641.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256651753|dbj|BAI17687.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654744|dbj|BAI20671.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 158

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + V+K +G    FD  KI+R+I  A             R + + +   EQ VT ++
Sbjct: 45  QLRELVVVKNDGRRAPFDREKIARSIRIAL------------RKRPVSEEQIEQIVTGIV 92

Query: 85  QHNKSALIVHI 95
           +  +      +
Sbjct: 93  RQLEGNGETEV 103


>gi|148724476|ref|YP_001285442.1| ribonucleotide reductase [Cyanophage Syn5]
 gi|145588121|gb|ABP87940.1| ribonucleotide reductase [Synechococcus phage Syn5]
          Length = 464

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 11/162 (6%)

Query: 368 LSSCFLTTVPDDLYG---IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
             SC +  V D + G   I  + +  +   + + G+    + +R  G         + G 
Sbjct: 23  PVSCTVFVVDDSMEGPEGIERSWRFVSHALRNAAGVAVHLSKLRPRGEENGK-GLVASGP 81

Query: 425 IPFLKVANDTAVAVNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483
           + F ++ +     + +GG  K GA   +L+  H D+EEF+D  +      ++  D+ T  
Sbjct: 82  VSFARIYSVLNETLRRGGTYKNGACVIHLDANHTDLEEFVDASRAELPWVKKCIDITTEW 141

Query: 484 W------IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519
           W      + +  +K +     W      +            E
Sbjct: 142 WNDLTEPVQEKILKAIQAGDIWLNKVKYDRKGNRIYGNVCLE 183


>gi|110801578|ref|YP_698843.1| hypothetical protein CPR_1525 [Clostridium perfringens SM101]
 gi|110682079|gb|ABG85449.1| hypothetical protein CPR_1525 [Clostridium perfringens SM101]
          Length = 89

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           + +IK++G +  F   K+S ++  A  +      ++S      I  + +     L +   
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNA-ASDLNFTLNKSD-----INIIAKDVEETLKKIRK 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            +      E I   V  +L       + R YV YR+
Sbjct: 55  DNGETSSYEVI-GVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|313617787|gb|EFR90011.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           innocua FSL S4-378]
          Length = 42

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSR 906
             KL  ++  AW  GLKTTYY+RS 
Sbjct: 6   ASKLLELHMTAWNEGLKTTYYVRSN 30


>gi|291563039|emb|CBL41855.1| anaerobic ribonucleoside-triphosphate reductase [butyrate-producing
           bacterium SS3/4]
          Length = 710

 Score = 43.7 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           K   ++VIK++G    F+  K+  A+ K A  A+     + S  + + ++   E+     
Sbjct: 2   KCSEIKVIKKDGTKEEFNVQKVLAAVNKSANRAMIIFSKAESKFICEFVEEKAEEL---- 57

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                    V I  + + VE +L +     + + Y  YR
Sbjct: 58  -----DQSEVPIAQMHNIVEGALERVNP-VVAKSYRDYR 90


>gi|189242004|ref|XP_001807057.1| PREDICTED: hypothetical protein, partial [Tribolium castaneum]
          Length = 765

 Score = 43.7 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 42/508 (8%), Positives = 106/508 (20%), Gaps = 43/508 (8%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR------- 304
           Y  Y+             +     +D  +  N  ++   + +++ G    Y+        
Sbjct: 139 YNWYWVNLNLWRFDFWKGYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTGYNWNWVNFNF 198

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS----FHFMCSTPTLFN 360
           +  +         +  +  V   L   +  K      +Y+        + F       F 
Sbjct: 199 WSFNFRKWYWFYSRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWINFNFWSFNFRKWYWFY 258

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY-SGGLGNDWTPVRGLGAHIHGTNG 419
           SG       +  L          F +  +      +       +W        +      
Sbjct: 259 SGYNWY-WVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVN 317

Query: 420 K---SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL-DLRKNTGDDRRR 475
               S     +    +            +                +  +  +       +
Sbjct: 318 FDFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWK 377

Query: 476 THDMNTA---NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532
            +  NT    NW+   F     +   W     +      +L+  +F   Y          
Sbjct: 378 WYGFNTGYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWRFDFWKRYWFNSWYDWNW 437

Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592
                R  S    +R            W  F    N      ++            +   
Sbjct: 438 YWHWNRFNSGYNWYRINFNFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYD 497

Query: 593 SSEETAVCNLGSINLLAH------FANNQFDYDKLASTIRTAVRV-------LDNVIDIN 639
            +         S            +  N  ++D  +   R              N+    
Sbjct: 498 WNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWR 557

Query: 640 CHTIEKAKKSNH--------THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691
               ++   ++           R        +       +  + + +          +  
Sbjct: 558 FDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFY 617

Query: 692 --FHAISASVELAQERGAYSSFKGSLWD 717
             ++    +  L +          S +D
Sbjct: 618 SGYNWYWVNFNLWRFDFWKWYGFNSWYD 645



 Score = 41.0 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 39/524 (7%), Positives = 104/524 (19%), Gaps = 45/524 (8%)

Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR------- 304
           Y  Y+             +     +D  +  N  ++   + +++ G    Y+        
Sbjct: 261 YNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDF 320

Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364
           +  +            +  V + L   +  K      +Y+     ++             
Sbjct: 321 WSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYG 380

Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424
                +     V  + +                  +  +         +   +       
Sbjct: 381 FNTGYN--WNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWY 438

Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
             + +  +                  +   +      +++L     D  +R    +  +W
Sbjct: 439 WHWNRFNSGYNWYRINFNFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDW 498

Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSD----LHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
                  R      W  +  +   +      D +   F   Y  Y             + 
Sbjct: 499 NWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWRF 558

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCN--------IRSPQQHVGVVHSSNLCTEITLNS 592
                +       +     W  F    N          +         S N        S
Sbjct: 559 DFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWFYS 618

Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652
                 V      NL        + ++          R  D           +    ++ 
Sbjct: 619 GYNWYWVN----FNLWRFDFWKWYGFNSWYD--WNWYRHWDRFHSRYNWKWYRFNTGHNW 672

Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712
           +R I      F            +   +     S +F  +                  + 
Sbjct: 673 YR-IYFDFWSFNFRKWYWFYSRYNWYRINFNFWSFDFRKW-----------------YWF 714

Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            + ++      D     +            R  +   + +    
Sbjct: 715 YTWYNWYGVNFDFWAFDSWNWYWFDSWSYGRWSYQGSRLQPCKY 758


>gi|168206781|ref|ZP_02632786.1| hypothetical protein AC3_2016 [Clostridium perfringens E str.
           JGS1987]
 gi|168213524|ref|ZP_02639149.1| hypothetical protein AC5_1925 [Clostridium perfringens CPE str.
           F4969]
 gi|168217701|ref|ZP_02643326.1| hypothetical protein AC7_1808 [Clostridium perfringens NCTC 8239]
 gi|169342837|ref|ZP_02629532.2| hypothetical protein CPC_1793 [Clostridium perfringens C str.
           JGS1495]
 gi|182624720|ref|ZP_02952501.1| hypothetical protein CJD_2119 [Clostridium perfringens D str.
           JGS1721]
 gi|169299094|gb|EDS81166.1| hypothetical protein CPC_1793 [Clostridium perfringens C str.
           JGS1495]
 gi|170661803|gb|EDT14486.1| hypothetical protein AC3_2016 [Clostridium perfringens E str.
           JGS1987]
 gi|170714941|gb|EDT27123.1| hypothetical protein AC5_1925 [Clostridium perfringens CPE str.
           F4969]
 gi|177910117|gb|EDT72511.1| hypothetical protein CJD_2119 [Clostridium perfringens D str.
           JGS1721]
 gi|182380236|gb|EDT77715.1| hypothetical protein AC7_1808 [Clostridium perfringens NCTC 8239]
          Length = 89

 Score = 43.7 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           + +IK++G +  F   K+S ++  A  +      ++S      I  + +     L     
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNA-ASDLNFTLNKSD-----INIIAKDVEETLKSIRK 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            +      E I   V  +L       + R YV YR+
Sbjct: 55  DNGETSSYEVI-GVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|158313086|ref|YP_001505594.1| transcriptional regulator NrdR [Frankia sp. EAN1pec]
 gi|226732993|sp|A8L6K6|NRDR_FRASN RecName: Full=Transcriptional repressor NrdR
 gi|158108491|gb|ABW10688.1| ATP-cone domain protein [Frankia sp. EAN1pec]
          Length = 186

 Score = 43.7 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 5   KDVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +        + P+    F   +   ++V KR+G    F  +K+   + KA          
Sbjct: 21  EGAAIRRRRSCPACGRRFTTMEEASLRVRKRSGATEPFSRAKVIVGVRKA---------C 71

Query: 64  RSIRVQ-DIIKNLTEQTVTRLLQHNKSALIVHIEDI 98
           +   V+ D +  L E+    +   +  +  V  ED+
Sbjct: 72  QGRPVRSDDLALLAERVEETV--RSSGSAEVAAEDV 105


>gi|254500636|ref|ZP_05112787.1| ATP cone domain, putative [Labrenzia alexandrii DFL-11]
 gi|222436707|gb|EEE43386.1| ATP cone domain, putative [Labrenzia alexandrii DFL-11]
          Length = 115

 Score = 43.7 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 23/132 (17%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    +  A+ K                 + I+ +    V
Sbjct: 2   QLRELMVLKRSGRRVPFDREKLVRSVQIAVRK------------RPVDPERIERMVSGIV 49

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS-HSKSDA 139
            +L    +S   +  E I + V   L   G   +   YV +     + R A+   +  D 
Sbjct: 50  RQLESSGESE--ITAETIGNHVMEGL--KGVDDVA--YVRFASVYKNFREAKDFEALLDE 103

Query: 140 PIAPKLKIMMDD 151
              P   +   D
Sbjct: 104 LSDPVTPVSNKD 115


>gi|18310537|ref|NP_562471.1| hypothetical protein CPE1555 [Clostridium perfringens str. 13]
 gi|168209373|ref|ZP_02634998.1| hypothetical protein AC1_1954 [Clostridium perfringens B str. ATCC
           3626]
 gi|18145218|dbj|BAB81261.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|170712531|gb|EDT24713.1| hypothetical protein AC1_1954 [Clostridium perfringens B str. ATCC
           3626]
          Length = 89

 Score = 43.7 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           + +IK++G +  F   K+S ++  A  +      ++S      I  + +     L     
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNA-ASDLNFTLNKSD-----INIIAKDVEETLKSIRK 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            +      E I   V  +L       + R YV YR+
Sbjct: 55  DNGKTSSYEVI-GVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|114562212|ref|YP_749725.1| transcriptional regulator NrdR [Shewanella frigidimarina NCIMB 400]
 gi|119372226|sp|Q086C8|NRDR_SHEFN RecName: Full=Transcriptional repressor NrdR
 gi|114333505|gb|ABI70887.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 149

 Score = 43.7 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             F      + +VIKR+G    FD  K+   +     AVE +  S      D I+    +
Sbjct: 39  TTFEGAELVMPRVIKRDGTRQPFDEEKLRGGM---LRAVEKRPVSI-----DEIEQALTK 90

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             + L         V+ E I + +   LM     K+   Y+    +YR 
Sbjct: 91  IKSTL--RATGEREVNSEMIGNLMMEQLMSLD--KVA--YIRFASVYRA 133


>gi|110800017|ref|YP_696240.1| hypothetical protein CPF_1806 [Clostridium perfringens ATCC 13124]
 gi|110674664|gb|ABG83651.1| hypothetical protein CPF_1806 [Clostridium perfringens ATCC 13124]
          Length = 89

 Score = 43.7 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           + +IK++G +  F   K+S ++  A               +  I  + +     L     
Sbjct: 1   MNIIKKDGRIEEFKIEKLSTSLSNA------ASDLNFTLNKSYINIIAKDVEETLKSIRK 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123
            +      E I   V  +L       + R YV YR+
Sbjct: 55  DNGKTSSYEVI-GVVIDTLKNEKFSDVLRAYVKYRK 89


>gi|300741277|ref|ZP_07071298.1| transcriptional regulator NrdR [Rothia dentocariosa M567]
 gi|300380462|gb|EFJ77024.1| transcriptional regulator NrdR [Rothia dentocariosa M567]
          Length = 203

 Score = 43.3 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          + VIKR+G    FD SKI+  + KA               +D +  L ++    +   
Sbjct: 46 ISVIKRSGVTEPFDRSKIAAGVRKA--------CQGRPVGEDDLAKLAQEVEELIRAR 95


>gi|311113353|ref|YP_003984575.1| transcriptional regulator NrdR [Rothia dentocariosa ATCC 17931]
 gi|310944847|gb|ADP41141.1| transcriptional regulator NrdR [Rothia dentocariosa ATCC 17931]
          Length = 203

 Score = 43.3 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          + VIKR+G    FD SKI+  + KA               +D +  L ++    +   
Sbjct: 46 ISVIKRSGVTEPFDRSKIAAGVRKA--------CQGRPVGEDDLAKLAQEVEELIRAR 95


>gi|257373023|ref|YP_003175797.1| NrdR family transcriptional regulator [Halomicrobium mukohataei DSM
           12286]
 gi|310947290|sp|C7P544|NRDR_HALMD RecName: Full=Transcriptional repressor NrdR
 gi|257167747|gb|ACV49439.1| ATP-cone domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 162

 Score = 43.3 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS--GLQDVSSK 179
           R  R   R +   +  + P    L++   DGT+ SF+ ++L   +E A     + + +  
Sbjct: 26  RRRRECQRCSFRFTTYERPEWESLQVKKRDGTIESFDRQKLRAGIERAVEKRDVTETTVT 85

Query: 180 IVLSETYKNMYDG----LSESDLETALIFSSRTL 209
            ++ +    +       +S S +   +  S RTL
Sbjct: 86  ALVDDVESELQGREARIVSSSLIGELVSESLRTL 119



 Score = 41.4 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          + +QV KR+G + SFD  K+   I +A   VE +        +  +  L +   + L   
Sbjct: 47 ESLQVKKRDGTIESFDRQKLRAGIERA---VEKRDV-----TETTVTALVDDVESELQGR 98


>gi|296129416|ref|YP_003636666.1| ATP-cone domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021231|gb|ADG74467.1| ATP-cone domain protein [Cellulomonas flavigena DSM 20109]
          Length = 163

 Score = 43.3 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 6  DVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKA 53
            +       PS    F   +   + V+KR+G    F   KI+  + KA
Sbjct: 22 GSSIRRRRQCPSCHRRFTTIETASLSVVKRSGATEPFSREKIANGVRKA 70



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVLSETYKNMY----DGLSESD 197
            L ++   G    F+ +++   V +AC G  + +    ++  +  +N+       +   +
Sbjct: 45  SLSVVKRSGATEPFSREKIANGVRKACQGRPVSEDDLALLAQKVEENLRTAGSAEIDAYE 104

Query: 198 LETALIFSSRTLIEKEPNYAKVTA 221
           +  A++   R L   E  Y +  +
Sbjct: 105 IGLAILGPLREL--DEVAYLRFAS 126


>gi|227523223|ref|ZP_03953272.1| ribonucleoside triphosphate reductase [Lactobacillus hilgardii ATCC
           8290]
 gi|227089610|gb|EEI24922.1| ribonucleoside triphosphate reductase [Lactobacillus hilgardii ATCC
           8290]
          Length = 749

 Score = 43.3 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 76/519 (14%), Positives = 152/519 (29%), Gaps = 86/519 (16%)

Query: 377 PDDLYGIFGALQENAMLA------KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430
           PD   G   +      L       K    L  D + +R  GA I G  G + G +P +++
Sbjct: 229 PDTREGWVLSNAHLIDLHFKSTNPKNQQNLVLDMSDIRPKGAKIKGFGGTASGPMPLIEM 288

Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490
             D    +N   +R+ +     +  ++       + K       R           D   
Sbjct: 289 LFDINGVLNNRARRRLSSVDMTDIGNM-------IGKTVVAGNVRRSAELALGSADDEDF 341

Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550
             + Q+                      E  Y  + R A    + V  + S    +  + 
Sbjct: 342 ITMKQDK---------------------EKLY--HHRWASNNSVAVDSQFSN---YGPIA 375

Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LA 609
             +   G P I   +       +   G+    +   E T      E ++ N    NL   
Sbjct: 376 DSIRHNGEPGIVNLELSKNYGRKID-GIQKDIDPNVEGTNPCG--EISLSNGEPCNLFEV 432

Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669
                      L        R     +  + +  E ++K+ + +R IG+ + G Q  +  
Sbjct: 433 FPYVASQQNWDLDEAFTLGTRF-SKRVTFSPYDWEVSRKAINKNRRIGISMSGIQDWILS 491

Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                                  + +    + A++     + K  ++D     ID +  L
Sbjct: 492 E--------------------LGNRVVTGYQDAKDPETGETIKKPIYD--QRAIDKVDGL 529

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789
            +   +   + +  L  +   K              + P+ T+A + GVS+ +   Y   
Sbjct: 530 YKAVVKADKDYSDELGCNTSIKH-----------TTVKPSGTVAKLAGVSEGMHFHYAPY 578

Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHATA 848
            ++      F   +  L+  LK        +  D+   +  +            K  A+A
Sbjct: 579 LIQRIR---FQDSDP-LLPALKACGY---HVEKDIYSKNTMVAEFPIRAAHADSKKFASA 631

Query: 849 FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLD 886
             +       + +  Q  W D A S  +      G ++ 
Sbjct: 632 GNVSIAEQFATQAFLQTYWSDNAVSCTVTFQPEEGDQIA 670


>gi|255026985|ref|ZP_05298971.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes FSL J2-003]
          Length = 43

 Score = 43.3 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSR 906
             KL  ++  AW  GLKTTYY+RS 
Sbjct: 7   ASKLLELHMTAWNEGLKTTYYVRSN 31


>gi|281210867|gb|EFA85033.1| ribonucleoside triphosphate reductase [Polysphondylium pallidum
           PN500]
          Length = 824

 Score = 43.3 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 34/156 (21%)

Query: 743 RLPWDELKKRVKTIGMRNSNCMAIA---------PTATIANICGVSQSIDPSYQNLYVKS 793
           +    E  K ++      S  +AI          P+ T++ + G +  +       Y++ 
Sbjct: 594 KHWSTEGYKAIQQYDNHYSEWLAIPKSIKTTSIKPSGTVSLLAGATPGMHYPISEYYIRR 653

Query: 794 NMSGDFTVVNSFLVNELKQRDLWDE-------AMISDLKYHDGSIGNIERIPDDLKKIHA 846
                    +S L+  L +     E        M+ ++  H G    I       K    
Sbjct: 654 VR----LQRDSPLLKPLIEAGYHVEPAVENKYNMVVEIPIHSG--QGI------RKAKSL 701

Query: 847 TAFEIDPMWLIESASRRQK-WIDQAQSLNLYLDEPS 881
           T +E      +  A+  QK W D   S  +  +  +
Sbjct: 702 TMWE-----QLSLAAFLQKYWADNQVSCTVSFNPAT 732


>gi|307945265|ref|ZP_07660601.1| transcriptional regulator NrdR [Roseibium sp. TrichSKD4]
 gi|307771138|gb|EFO30363.1| transcriptional regulator NrdR [Roseibium sp. TrichSKD4]
          Length = 158

 Score = 43.3 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 22/99 (22%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    +  A+ K    VE           + I+ +    V
Sbjct: 45  QLRELFVVKRSGRRVPFDREKLARSVETAVRK--RPVE----------PERIERMISGIV 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
            +L    +S +    E I + V   L   G   +   YV
Sbjct: 93  RQLESSGESDVTA--ETIGNHVMEGL--KGIDDVA--YV 125


>gi|24374976|ref|NP_719019.1| transcriptional regulator NrdR [Shewanella oneidensis MR-1]
 gi|113969439|ref|YP_733232.1| transcriptional regulator NrdR [Shewanella sp. MR-4]
 gi|114046667|ref|YP_737217.1| transcriptional regulator NrdR [Shewanella sp. MR-7]
 gi|117919544|ref|YP_868736.1| transcriptional regulator NrdR [Shewanella sp. ANA-3]
 gi|38258781|sp|Q8EBN9|NRDR_SHEON RecName: Full=Transcriptional repressor NrdR
 gi|119372227|sp|Q0HL92|NRDR_SHESM RecName: Full=Transcriptional repressor NrdR
 gi|119372228|sp|Q0HXJ5|NRDR_SHESR RecName: Full=Transcriptional repressor NrdR
 gi|189030853|sp|A0KU61|NRDR_SHESA RecName: Full=Transcriptional repressor NrdR
 gi|24349702|gb|AAN56463.1|AE015783_6 conserved hypothetical protein TIGR00244 [Shewanella oneidensis
           MR-1]
 gi|113884123|gb|ABI38175.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           sp. MR-4]
 gi|113888109|gb|ABI42160.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           sp. MR-7]
 gi|117611876|gb|ABK47330.1| Ribonucleotide reductase regulator NrdR-like protein [Shewanella
           sp. ANA-3]
          Length = 149

 Score = 43.3 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             F      + +VIKR+G    FD  K+   +     AVE +  S      D I+    +
Sbjct: 39  TTFEGAELVMPRVIKRDGTRQPFDEEKLQAGM---LRAVEKRPVS-----MDEIEQALSK 90

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             + L         V  E I + +   LM     K+   Y+    +YR 
Sbjct: 91  IKSTL--RATGEREVPSEMIGNLMMEQLMSLD--KVA--YIRFASVYRA 133


>gi|300781017|ref|ZP_07090871.1| NrdR family transcriptional regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300532724|gb|EFK53785.1| NrdR family transcriptional regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 122

 Score = 43.3 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS------SKIVLSETYKNMYDGLSE 195
              L ++  +G    F+  +L + V  AC G           ++ V           +  
Sbjct: 11  KAVLTVVKRNGVSEPFDRDKLIVGVRRACQGRDVSDDALKRLAQEVEEIVRAQGSSQIPS 70

Query: 196 SDLETALIFSSRTLIEKEPNYAKVTA 221
           + +  A++   R L   E  Y +  +
Sbjct: 71  NQIGLAILEPLRAL--DEVAYLRFAS 94


>gi|120598056|ref|YP_962630.1| transcriptional regulator NrdR [Shewanella sp. W3-18-1]
 gi|146293873|ref|YP_001184297.1| transcriptional regulator NrdR [Shewanella putrefaciens CN-32]
 gi|189030852|sp|A4Y965|NRDR_SHEPC RecName: Full=Transcriptional repressor NrdR
 gi|189030855|sp|A1RHD1|NRDR_SHESW RecName: Full=Transcriptional repressor NrdR
 gi|120558149|gb|ABM24076.1| ATP-cone domain protein [Shewanella sp. W3-18-1]
 gi|145565563|gb|ABP76498.1| ATP-cone domain protein [Shewanella putrefaciens CN-32]
 gi|319427245|gb|ADV55319.1| ribonucleotide reductase transcriptional regulator, NrdR
           [Shewanella putrefaciens 200]
          Length = 149

 Score = 43.3 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             F      + +VIKR+G    FD  K+   +     AVE +  S      D I+    +
Sbjct: 39  TTFEGAELVMPRVIKRDGSRQPFDEEKLQSGM---LRAVEKRPVS-----MDEIEQALSK 90

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             + L         V  E + + +   LM     K+   Y+    +YR 
Sbjct: 91  IKSTL--RATGEREVPSEMVGNLMMEQLM--NLDKVA--YIRFASVYRA 133


>gi|331083709|ref|ZP_08332820.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403920|gb|EGG83472.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 711

 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G    F+  KI RA+ K+           S  + D  K+  +       +  +
Sbjct: 2   MYVIKKDGTKEDFNIQKIVRAVNKS----------ASRIMYDFKKDEIDFLCEYAEEKAQ 51

Query: 89  S--ALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           S     + I+D+ + VE +L +     + + Y  YR
Sbjct: 52  SLEKEEISIQDMHNIVEGALEKVNP-AVAKSYRDYR 86


>gi|260587428|ref|ZP_05853341.1| anaerobic ribonucleoside-triphosphate reductase [Blautia hansenii
           DSM 20583]
 gi|260542295|gb|EEX22864.1| anaerobic ribonucleoside-triphosphate reductase [Blautia hansenii
           DSM 20583]
          Length = 714

 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + VIK++G    F+  KI RA+ K+           S  + D  K+  +       +  +
Sbjct: 5   MYVIKKDGTKEDFNIQKIVRAVNKS----------ASRIMYDFKKDEIDFLCEYAEEKAQ 54

Query: 89  S--ALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
           S     + I+D+ + VE +L +     + + Y  YR
Sbjct: 55  SLEKEEISIQDMHNIVEGALEKVNP-AVAKSYRDYR 89


>gi|302382995|ref|YP_003818818.1| ATP-cone domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302193623|gb|ADL01195.1| ATP-cone domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 158

 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 27/129 (20%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS          + P+    F      +++ + ++KRNG  T FD  K    ++ A+ K
Sbjct: 17  RPSDDGAAIRRRRSCPNCNGRFTTFERVQLRELVILKRNGRRTPFDRDKLERSLAIALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + ++ +  + V +L    ++ +   +  + D +  +L   G  
Sbjct: 77  ------------RPIQPEQVEQMVSRIVRQLESLGETEIPSSV--VGDFIMKAL--KGVD 120

Query: 113 KITREYVLY 121
           ++   YV Y
Sbjct: 121 EVA--YVRY 127


>gi|30044005|ref|NP_835602.1| putative ribonucleotide reductase [Rhodothermus phage RM378]
          Length = 658

 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 756 IGMRNSNCMA-IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812
            G+ N   +  + P+ T++ + GVS    P Y   +++ N       +N  LV  LK 
Sbjct: 445 FGLNNPARITLVKPSGTVSLLAGVSPGCHPPYSEYFIRRNR----VDMNHMLVEVLKD 498


>gi|118587984|ref|ZP_01545394.1| hypothetical protein SIAM614_10423 [Stappia aggregata IAM 12614]
 gi|118439606|gb|EAV46237.1| hypothetical protein SIAM614_10423 [Stappia aggregata IAM 12614]
          Length = 158

 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 22/99 (22%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    +  A+ K                 D I+ +    V
Sbjct: 45  QLRELLVLKRSGRRVPFDREKLMRSVQIAVRK------------RPVDPDKIERMVSGIV 92

Query: 81  TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
            +L    ++   +  E I + V   L   G   +   YV
Sbjct: 93  RQLESSGETE--ITAETIGNHVMEGL--KGIDDVA--YV 125


>gi|161506765|ref|YP_001576715.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           helveticus DPC 4571]
 gi|160347754|gb|ABX26428.1| Anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           helveticus DPC 4571]
          Length = 739

 Score = 42.9 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G    F+  K+                  ++ + +    + E+   +L        
Sbjct: 21  IKRDGAKYPFEIFKLKM-------------GLHNLDLDNEADAVIEKIAAKLT-----GA 62

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124
            V  ED+    + SL + G+    + YV YR++
Sbjct: 63  TVKAEDVAHAFKESLNELGYLDEAKAYVDYRKQ 95


>gi|163793212|ref|ZP_02187188.1| Predicted transcriptional regulator [alpha proteobacterium BAL199]
 gi|159181858|gb|EDP66370.1| Predicted transcriptional regulator [alpha proteobacterium BAL199]
          Length = 156

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 21/103 (20%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            P++D          P+    F      +++ + V+K+ G    FD  K    I  A+ K
Sbjct: 17  RPTEDNTAIRRRRFCPACGARFTTFERVQLRELTVMKKTGKRVPFDRDKLARSIQIALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
                            + I+ LT   V RL    +S +   +
Sbjct: 77  ------------RPIDPERIERLTTGIVRRLESMGESEIPSDV 107


>gi|326437421|gb|EGD82991.1| ribonucleoside-triphosphate reductase [Salpingoeca sp. ATCC 50818]
          Length = 765

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNS-NCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
           L ++R +    DE  +    IG+  +     + P  T + + G S  + P +   Y++  
Sbjct: 539 LDLSRAAHAAVDENARVSAAIGISTADRVTTVKPAGTTSLVLGTSSGVHPWHAEHYIRRM 598

Query: 795 MSGDFTVVNSFLVN 808
                  +  +L+ 
Sbjct: 599 RVNKQESLYPYLLE 612


>gi|262195342|ref|YP_003266551.1| ATP-cone domain protein [Haliangium ochraceum DSM 14365]
 gi|262078689|gb|ACY14658.1| ATP-cone domain protein [Haliangium ochraceum DSM 14365]
          Length = 164

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK---IVLSETYKNMYD 191
           +   AP LK++     +  F+S +L+  +E  C G   +S+     +  +    + D
Sbjct: 39  ERAGAPSLKVIKRSERVEGFDSDKLQRALERVCRGRSAISASDIRRIARDIEAELVD 95



 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR-VQDIIKNLTEQTVTRLLQ 85
             ++VIKR+  V  FD  K+ RA+ +    V    ++ S   ++ I +++  + V    +
Sbjct: 44  PSLKVIKRSERVEGFDSDKLQRALER----VCRGRSAISASDIRRIARDIEAELVDASAK 99

Query: 86  HNKSALIVH 94
              S  IV 
Sbjct: 100 SVHSGQIVD 108


>gi|50955136|ref|YP_062424.1| transcriptional regulator NrdR [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|59799104|sp|Q6AE77|NRDR_LEIXX RecName: Full=Transcriptional repressor NrdR
 gi|50951618|gb|AAT89319.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 157

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 6   DVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
            ++       P     F   +   + VIKR+G V  F   KI   + KA    +G+  + 
Sbjct: 22  GLSIRRRRQCPECGRRFSTTETASLSVIKRSGVVEPFSREKIVLGVRKA---CQGRPVTD 78

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIE 96
           S      +  L ++    +    +S     IE
Sbjct: 79  SD-----LAVLAQKVEETI----RSTGASQIE 101


>gi|313676169|ref|YP_004054165.1| ATP-cone domain protein [Marivirga tractuosa DSM 4126]
 gi|312942867|gb|ADR22057.1| ATP-cone domain protein [Marivirga tractuosa DSM 4126]
          Length = 282

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 46/137 (33%), Gaps = 8/137 (5%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
               + I    G    F+  +L   +E A +G   +    ++SE    + +G+S   + +
Sbjct: 2   PEKTVLITKASGEKAPFSPTKLRHSLERAGAGSAVID--RIVSEIEAQLVEGMSTKKIYS 59

Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260
                + +++ K      V  R+ +++   E+  + Y   +          Y       I
Sbjct: 60  ----QAFSMLRKHSK--PVAGRYKIKQAILELGPSGYPFEKFVGEILKHQGYRTKVGVII 113

Query: 261 EEGVKARLLHESMMDFD 277
           +    +  +       +
Sbjct: 114 QGHCVSHEIDVEAEKDN 130


>gi|269956060|ref|YP_003325849.1| ATP-cone domain-containing protein [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269304741|gb|ACZ30291.1| ATP-cone domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 161

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 6  DVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
            +       PS    F   +   + V+KR+G    F   KI   + KA           
Sbjct: 22 GSSIRRRRQCPSCGRRFTTLETASLAVVKRSGATEPFSRDKIVTGVRKA--------CQG 73

Query: 65 SIRVQDIIKNLTEQTVTRLLQH 86
              +D +  L ++    L Q 
Sbjct: 74 RPVSEDDLAILAQKVEETLRQQ 95


>gi|331085664|ref|ZP_08334747.1| hypothetical protein HMPREF0987_01050 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406587|gb|EGG86092.1| hypothetical protein HMPREF0987_01050 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 754

 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 29/179 (16%)

Query: 24  EKIKGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82
            K   V+VIK++G    F+  K+  A+ K A+ A+     +        ++ + +    +
Sbjct: 45  SKCSMVKVIKKDGTSEEFNVQKVVVAVNKSAYRALIQFTDA-------ELEFICKFVEEK 97

Query: 83  LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142
           +   +     V I ++ + VE +L +     + +    YR+ R+  +            +
Sbjct: 98  V--RDMGVEEVRIAEMHNIVEGALEKVNPL-VAKS---YRDYRNYKQDFVQMLDEVYKKS 151

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
             +  +   G   + N+           S L      ++ +E  K +Y    L+  +++
Sbjct: 152 QSIMYI---GDKENSNTD----------SALVSTKRSLIFNELNKELYKKFFLTTEEIQ 197


>gi|289191534|ref|YP_003457475.1| ATP-cone domain protein [Methanocaldococcus sp. FS406-22]
 gi|288937984|gb|ADC68739.1| ATP-cone domain protein [Methanocaldococcus sp. FS406-22]
          Length = 83

 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198
             +  K+ I   DG+   F+ + ++  +  A +  + V  + V+      ++D ++  +L
Sbjct: 2   DEVLAKVYITKSDGSREKFDFEIIKESLRNAGADEELV--EEVIKRIENRIHDEITTQEL 59

Query: 199 ETALIFSSRTLIEK 212
           +  +    R L   
Sbjct: 60  KMMITTVLRRLNRD 73


>gi|296109025|ref|YP_003615974.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           infernus ME]
 gi|295433839|gb|ADG13010.1| anaerobic ribonucleoside-triphosphate reductase [Methanocaldococcus
           infernus ME]
          Length = 779

 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 43/160 (26%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG    FD  K         +       +    +  ++  L  +    +       
Sbjct: 33  VIKRNGKKEKFDLFK--------LIKSLKNCGAEEEIINKVVNELMLKVYDEITTD---- 80

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREY-VLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149
                 +I++ V               Y +L        R               LK+  
Sbjct: 81  ------EIKNIV---------------YSIL--------RKYNRELAEKYKRGVILKVRT 111

Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
            +     FN +++   +        + ++K +  E  + +
Sbjct: 112 SEKEFEPFNKEKIVKALIREAKA-DEETAKRIADEVEREL 150



 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
           K  ++  +G    F+  +L   ++    G ++     V++E    +YD ++  +++  +
Sbjct: 30  KFLVIKRNGKKEKFDLFKLIKSLKNC--GAEEEIINKVVNELMLKVYDEITTDEIKNIV 86


>gi|150399983|ref|YP_001323750.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           vannielii SB]
 gi|150012686|gb|ABR55138.1| anaerobic ribonucleoside-triphosphate reductase [Methanococcus
           vannielii SB]
          Length = 768

 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           ++ ++   G   SFN  +    +  +    ++V    +LSE     Y+G+S  DL     
Sbjct: 11  EISVVKRSGNEESFNVNKFVKSLITSGVDYENVD--TILSEIQGKFYNGMSTEDL----- 63

Query: 204 FSSRTLIEKEPN 215
            S    I KE +
Sbjct: 64  KSVVYSILKEYD 75


>gi|255326241|ref|ZP_05367327.1| transcriptional regulator NrdR [Rothia mucilaginosa ATCC 25296]
 gi|283458358|ref|YP_003362981.1| putative transcriptional regulator [Rothia mucilaginosa DY-18]
 gi|255296695|gb|EET76026.1| transcriptional regulator NrdR [Rothia mucilaginosa ATCC 25296]
 gi|283134396|dbj|BAI65161.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18]
          Length = 151

 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
          + VIKR+G    FD SKI+  + KA               +D +  L ++    +   
Sbjct: 46 ISVIKRSGVTEPFDRSKIAAGVRKA--------CQGRPVGEDDLAKLAQEVEELIRAR 95


>gi|90420317|ref|ZP_01228225.1| 1,4-alpha-glucan branching enzyme 1 [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335651|gb|EAS49401.1| 1,4-alpha-glucan branching enzyme 1 [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 742

 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 100/376 (26%), Gaps = 35/376 (9%)

Query: 428 LKVANDTAVAVNQGGKRKGA---VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484
           L   + TA+  +   +R           +    +VE FL        DR     +     
Sbjct: 365 LGQFDGTALYEHPDPRRGFHKDWNTLIYDYGRPEVENFLVANGLYWLDRFHIDGLRVDAV 424

Query: 485 IPDLFMKRVTQNAGW---------TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535
              L++    ++  W          L +   + D ++  G+ +  A  + E      ++ 
Sbjct: 425 ASMLYLDYSREHGEWEPNIHGGRENLEAMAFLKDTNERVGEYYPKATTHAEESTAFPDVS 484

Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595
                  +    K           ++  +DP N R    H+             L  S +
Sbjct: 485 RPTFAGGLGFHFKWNMGWMHDTLHYMQ-EDPINRRYHHHHMTFGMVYAYSENFVLPLSHD 543

Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLA-STIRTAV------------------RVLDNVI 636
           E  V   GS+ L     +    +  L                              D  +
Sbjct: 544 E-VVYGKGSL-LGKMPGDEWQKFANLRAYFGFMWTHPGKKLIFMGGEFGQVGEWNHDRSL 601

Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696
           D +       +      R +   +     AL+ L    A  E V+ ++     I+F    
Sbjct: 602 DWHLLDQPGHEGMRRLVRDLN-TMYREIPALYELDCDPAGFEWVDTSNVEQSVIAFMRKD 660

Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756
            +         ++      +  GV              E+           +  + V   
Sbjct: 661 RAGNPVLIVSNFTPVPRHDYRIGVPLPGKWVERLNTDSEIYGGSNVGNMGGKDAEEVSVH 720

Query: 757 GMRNSNCMAIAPTATI 772
           G   S  +++ P  T+
Sbjct: 721 GRPYSIPLSLPPLGTV 736


>gi|328543536|ref|YP_004303645.1| transcriptional regulator, consists of a Zn-ribbon and ATP-cone
           domains [polymorphum gilvum SL003B-26A1]
 gi|326413280|gb|ADZ70343.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Polymorphum gilvum SL003B-26A1]
          Length = 158

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 18/78 (23%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+KR+G    FD  K    +  A+ K                 + I+ +    V
Sbjct: 45  QLRELMVVKRSGRRVPFDRDKLIHSVQIAVRK------------RPVDPERIERMVSGIV 92

Query: 81  TRLLQHNKSALIVHIEDI 98
            +L   +     V  E I
Sbjct: 93  RQL--ESSGEGEVTSETI 108


>gi|154248197|ref|YP_001419155.1| ATP-cone domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|226736153|sp|A7INA4|NRDR_XANP2 RecName: Full=Transcriptional repressor NrdR
 gi|154162282|gb|ABS69498.1| ATP-cone domain protein [Xanthobacter autotrophicus Py2]
          Length = 182

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 21/100 (21%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKIS----RAIMK 52
            P++D          P     F      +++ + V+KR+G    FD  K++     A+ K
Sbjct: 17  RPTEDNTAIRRRRICPDCGGRFTTFERVQLRELMVLKRSGRRVPFDRDKLARSVDVALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
               V+G          + ++ +    V +L     S + 
Sbjct: 77  --RPVDG----------ERVERMLSGIVRQLESMGDSDIT 104


>gi|163788039|ref|ZP_02182485.1| hypothetical protein FBALC1_06658 [Flavobacteriales bacterium
           ALC-1]
 gi|159876359|gb|EDP70417.1| hypothetical protein FBALC1_06658 [Flavobacteriales bacterium
           ALC-1]
          Length = 279

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
            ++I+   G    F+  +L   ++   +G  D   K +L++    +Y G+S  ++  
Sbjct: 5   DIEIIKASGEKAKFSLDKLHSSLKR--TGANDKIVKQILNKVRDELYQGISTKEIYN 59


>gi|167647008|ref|YP_001684671.1| transcriptional regulator NrdR [Caulobacter sp. K31]
 gi|189030525|sp|B0T1I4|NRDR_CAUSK RecName: Full=Transcriptional repressor NrdR
 gi|167349438|gb|ABZ72173.1| ATP-cone domain protein [Caulobacter sp. K31]
          Length = 157

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 17/100 (17%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            PS+           P     F      +++ + ++KR+G  + FD  K    IS A  K
Sbjct: 17  RPSEDGAAIRRRRLCPECGGRFTTFERVQLRELTIVKRSGRRSPFDREKLVRSISIATRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALI 92
                         RV+ ++  +  Q  ++      S+ +
Sbjct: 77  --------RPVDPERVERMVNGIVRQLESQGETELPSSAV 108


>gi|167916607|ref|ZP_02503698.1| hypothetical protein Bpse112_39422 [Burkholderia pseudomallei 112]
          Length = 317

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 6/163 (3%)

Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL------YGIF 384
               +   A  FY  L +  F                ++SCF+  +            + 
Sbjct: 154 PMATRSGAARRFYRNLLNGAFGAGRIMARAGAAPDQTMASCFVHPIRAPAALTRFHPNLD 213

Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444
            AL E  +       +G D++ +   GA     +  S GV   L   +       +   R
Sbjct: 214 EALDEARLALAMGADIGYDFSAIPPAGARPDADHPDSPGVCAALDRFDRIGTQAGERDGR 273

Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487
           + A  A L   H D+  F   +        R   +  A    D
Sbjct: 274 RRAQLAVLRCDHPDLLAFAAAKHRHAGRHARWTTLELAVAATD 316


>gi|122202257|sp|Q2PDF6|RTPR_EUGGR RecName: Full=Adenosylcobalamin-dependent
           ribonucleoside-triphosphate reductase; Short=RTPR
 gi|84619547|emb|CAF05662.1| ribonucleotide reductase [Euglena gracilis]
          Length = 729

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 68/563 (12%), Positives = 144/563 (25%), Gaps = 121/563 (21%)

Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK-YSGGLG 401
           ++   +  F    P          Q +  +   +PD   G   +L+        ++  + 
Sbjct: 220 FDNAGAGSFTVPGP-------DDTQPT--YKFMIPDKREGWVESLKRLLKAHFCHTADVE 270

Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461
            D++ +R +G  +    G S G  P L   + +   +  G K K      +     D+  
Sbjct: 271 FDYSKIREMGTKLKTFGGTSSGPGP-LINLHKSIRKILVGEKGKPISVTCIT----DIMN 325

Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521
            + +    G+  RR+ ++         F+   +        +P  V          F   
Sbjct: 326 LIGVCTVAGN-IRRSAEIAFGEADCKEFLDLKSYE-----TNPHRVEYGWASNNSIFAKV 379

Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581
             +Y                A    R         G P   +       S         +
Sbjct: 380 GMDYS--------------DACERVRT-------NGEPGFAWLSNMQAFSR-------MN 411

Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV--LDNVIDIN 639
                              +L S+ L          ++ L    RT          + + 
Sbjct: 412 GKPDYRDQRVLGGNPCLEQSLESMELCCLVETFPDKHETLEDFKRTLYSALLYAKTVTLL 471

Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699
                ++ +    +R IG  + G    +            +      +E           
Sbjct: 472 PLHWRESNEIMLRNRRIGCSVSGIAQFITNRG--------LHELKTWLEEGYDILHQYDC 523

Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759
           ++++                                          W  +++ +K     
Sbjct: 524 QISE------------------------------------------WLCIRQSIK----- 536

Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819
                ++ P+ TI+ + G +  +       Y +          +S L+  L +     E 
Sbjct: 537 ---LTSVKPSGTISLVAGATPGVHYPESCYYTRRLR----MARDSPLLERLIKAGYHVEP 589

Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNL-YL 877
                      +  I   P        T  +I     +  A+  Q+ W D   S  + + 
Sbjct: 590 CCVAP-----DVTAIVEFPVAAGNSIRTTRDITMWEQLSLAAFMQRYWADNQVSATITFD 644

Query: 878 DEPSGKKLDFIYRQAWLMGLKTT 900
            E  G  L+   +  +   LK  
Sbjct: 645 PETEGLHLNQALQY-FQYQLKGI 666


>gi|167944989|ref|ZP_02532063.1| transcriptional regulator NrdR [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 122

 Score = 42.5 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             +      + QV+K++G    FD  K+   + +A   +E +  S   RV   I ++T +
Sbjct: 27  TTYETAELNMPQVVKQDGSRVPFDEDKLRAGMERA---LEKRPVSAE-RVDAAISHITRK 82

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
             T+  +   S        I D V   L +    ++   YV
Sbjct: 83  LTTKGEREIPSL------QIGDLVMDELKRLD--QVA--YV 113


>gi|87302182|ref|ZP_01085007.1| ribonucleotide reductase (Class II) [Synechococcus sp. WH 5701]
 gi|87283107|gb|EAQ75063.1| ribonucleotide reductase (Class II) [Synechococcus sp. WH 5701]
          Length = 788

 Score = 42.1 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 72/273 (26%), Gaps = 14/273 (5%)

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +        +VF    +  +  + +   F++G   I F      RS    +      +  
Sbjct: 331 DALRMANHTRVFHSRPSKEVVLEAVLKQFQSGEGAIQFAPEAIARSNADLLPTAELRSEF 390

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            +I ++   EE                 +  +        R     L+   +I       
Sbjct: 391 IDIYVDQGREEA----------GRWLQLHHPEITAAELEHRLGRYGLNPCGEILGADFHC 440

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                H +R           A     +  A     +   E             V      
Sbjct: 441 NLAEIHLNRIDPADHQAQADAFRAGGLAVACLLNHDFEVERYRQSRAWDPIVGVSFTGLF 500

Query: 706 GAYSSFKGSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
             +    G+ W +      P    GL  + ++   + R   +  + +       G+R  N
Sbjct: 501 DFFVHAFGTPWLRWWEQGRPETEEGLAFKAQEAEYLGRWKEIVNEAVWDYCDRHGLRRPN 560

Query: 763 -CMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            C  + P  T + + G S    P     +++  
Sbjct: 561 RCTTVQPAGTKSLLTGASPGWHPPKAQRFIRRI 593


>gi|307151160|ref|YP_003886544.1| ATP-cone domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981388|gb|ADN13269.1| ATP-cone domain protein [Cyanothece sp. PCC 7822]
          Length = 180

 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACS-------GLQDVSSKIVLSETYKNMYDGLSESD 197
           + ++  +G+  SF+  +L   +  AC         L ++    + +   ++    ++  +
Sbjct: 49  ITVIKKNGSKESFDRSKLLRGIVRACEKTEIPAQRLDNI-VDEIEATLQQSPRREITSQE 107

Query: 198 LETALIFSSRTLIEKEPNYAKVTA 221
           +   ++ + R L   E  Y +  +
Sbjct: 108 IGQFVLKNLREL--NEVAYIRFAS 129


>gi|325479048|gb|EGC82148.1| hypothetical protein HMPREF9290_0799 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 132

 Score = 42.1 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G V  F   KI R+I  A  A + K    S  +  I+ ++ +   +   +  K++
Sbjct: 46  VIKKSGSVEKFAKEKIERSIKNA--AGDNKYDLNSSDLAIIVGDVIKALDSDPRKVYKTS 103

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                 +I++ ++ +L++ G+ ++ + ++ Y
Sbjct: 104 ------EIKNYIKDALIKEGYSQVYKSFISY 128


>gi|325661865|ref|ZP_08150486.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471843|gb|EGC75060.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 706

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           V+VIK++G    F+  K+  A+ K A+ A+     +        ++ + +    ++   +
Sbjct: 2   VKVIKKDGTSEEFNVQKVVVAVNKSAYRALIQFTDA-------ELEFICKFVEEKV--RD 52

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147
                V I ++ + VE +L +     + +    YR+ R+  +            +  +  
Sbjct: 53  MGVEEVRIAEMHNIVEGALEKVNPL-VAKS---YRDYRNYKQDFVQMLDEVYKKSQSIMY 108

Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG--LSESDLE 199
           +   G   + N+           S L      ++ +E  K +Y    L+  +++
Sbjct: 109 I---GDKENSNTD----------SALVSTKRSLIFNELNKELYKKFFLTTEEIQ 149


>gi|3549302|gb|AAC34830.1| UL45 protein [Macacine herpesvirus 3]
          Length = 187

 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 22/174 (12%)

Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG------- 797
            W+ L+  ++  G+RN+  ++IA     A +  V+ SI  +   +  +  +         
Sbjct: 19  QWETLRTEMQEYGVRNAQLLSIAADEETAFLWNVTPSIWAARDRIVDEETVLPVSPPSDE 78

Query: 798 -DFTVVNSFLVNELKQRDLW---DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853
             F  V    +        W    + + +      G++   +        +   A E+  
Sbjct: 79  CYFPTVMQKHLKVPIINYAWIEHHDEVKAKSIT-QGTVQRADVPSC----VFQRAAEL-Q 132

Query: 854 MWLIESASR-RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW-LMGLK-TTY-YL 903
              +E AS     ++DQ   L  Y +      L       W  +  K   Y Y 
Sbjct: 133 AD-VEMASVNVSMFVDQCVPLPFYYESSMTPDLLMKRMLKWYHLRCKVGVYKYC 185


>gi|325111006|ref|YP_004272074.1| transcriptional repressor nrdR [Planctomyces brasiliensis DSM 5305]
 gi|324971274|gb|ADY62052.1| Transcriptional repressor nrdR [Planctomyces brasiliensis DSM 5305]
          Length = 156

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           ++VIK++G    F+  KI   + KA      K       +++II     +      +   
Sbjct: 48  IKVIKKDGSRVPFNREKIREGLEKA----CYKRPVSEQDIEEIISQTEAEVYENYEREVP 103

Query: 89  S 89
           S
Sbjct: 104 S 104



 Score = 41.4 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVLSETYKNMYDG 192
           +K++  DG+ + FN +++   +E+AC    + +   + ++S+T   +Y+ 
Sbjct: 48  IKVIKKDGSRVPFNREKIREGLEKACYKRPVSEQDIEEIISQTEAEVYEN 97


>gi|210615132|ref|ZP_03290463.1| hypothetical protein CLONEX_02679 [Clostridium nexile DSM 1787]
 gi|210150440|gb|EEA81449.1| hypothetical protein CLONEX_02679 [Clostridium nexile DSM 1787]
          Length = 712

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83
           K + ++VIK++G    F+  K+  A+ K A+ A+          +   ++   E+     
Sbjct: 4   KRRMIRVIKKDGTKEEFNVQKVVVAVNKSAYRALIKFTDEELQFICQFVEEEVEKM---- 59

Query: 84  LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                    + I  + + VE +L +     + + Y  YR
Sbjct: 60  -----DTEEIRIAQMHNVVEGALEKVNP-TVAKSYRDYR 92


>gi|170760599|ref|YP_001787395.1| hypothetical protein CLK_1457 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407588|gb|ACA55999.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 92

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IK++G + +FD SK+  +I  +    EG   + S  +  I+K++ +  V  +     
Sbjct: 1   MEIIKKSGKLEAFDESKLKTSIANSARDTEGVHLTES-DLNSIVKDI-KNIVKNI--RKD 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYV 119
           +      E I   +   L ++  H++ + Y+
Sbjct: 57  NEKTSSYELI-GIINDVLKKNKFHEVLKAYI 86


>gi|145547609|ref|XP_001459486.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427311|emb|CAK92089.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1386

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 67/593 (11%), Positives = 139/593 (23%), Gaps = 82/593 (13%)

Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267
            L+  E +Y   T          +++         + + +   LY           +   
Sbjct: 226 YLLTGENSYMFKTINLSA---HSQIIIQFRFIFLDSWNAKHAYLY-----------IDNN 271

Query: 268 LLHESMMDFD---LVYLANDLKYERDFA----FEYLGLQILYDRYFLHINGSRIEMP--- 317
           ++     DF+   +  L   +  ++ F       + G  I  +       G + E     
Sbjct: 272 VIWTETYDFNNRQIQDLCGWIYDDKPFNVQITMPHTGSSITLNFTTNLNQGLQNESFGIR 331

Query: 318 -QAFFMRVAMGLALKETEKEKR---AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373
               F+    G +  +          +E Y      +            +     S+C  
Sbjct: 332 DIQIFIACLFGSSFNQACGTICGNGVIEQYEECDDGNIYSFDGCFNCQYSCIEGCSNCID 391

Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433
               +   G       N      +    + W     L       NGK       L     
Sbjct: 392 GICFECSIGWSFGPNFNTCTPIANDEKYSIWEECDDLLNFEICKNGKFITPSNCLSYQFG 451

Query: 434 TAVAVNQGGKRKGAVCAYLETWH---IDVEEF---------LDLRKNTGDDRRRTHDMNT 481
                    +     C  +        D+E                   D+  R      
Sbjct: 452 ICFKCQVNYELINNKCEAVCQNQAIVNDIECLDNNLYALDRCHQCAYDLDEGCRIQQNGV 511

Query: 482 ANWIPDLFMKRVTQN------AGWTLFSPDEV------SDLHDLYGKEFEIAYENYERQA 529
                D +   +  +          +  P+E                 F+  YE  + Q 
Sbjct: 512 CIQCLDGWKFDMVTDICTPICGNHIIEGPEECDININTKSQFGCQQCYFDCQYECTDCQ- 570

Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589
                     IS   L  +    +   G   I F D C+  +  +  G  +  N C    
Sbjct: 571 ---FGICHDCISGWKLKNQQCESI--CGDNQIQFIDECDDMNKIRFDGCYNCRNDCQREC 625

Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYD-KLASTIRTAVRVLDNVIDINC-----HTI 643
                     C  G        A    +++   +     +    D+  D+         I
Sbjct: 626 SYCFKGVCLDCIYG----WHLTAYFTCEFECGDSQIALISQEECDDSNDMQLDGCFGCKI 681

Query: 644 EKAKKSNHTHRAIGLGL-------MGFQSALHLLHIPYASPEAVEIADESMEFISFHA-- 694
           E  +        I               +++    +  A  E  +  +       ++   
Sbjct: 682 ECCRYCTQCIYGICYDCEYTFTLINQECNSVCGDGLVSAEYEQCDDMNRIPYDGCYNCNY 741

Query: 695 -ISASVELAQERGAYSSFKGSLWD----QGVFPIDSIGLLAEVRDELAMNRTS 742
                 +L  +   Y   +   +           D I +  E  D+  ++++ 
Sbjct: 742 QCRQFCKLCIQGVCYDQCEQGYYQVDNVCYPICGDGIIVEEEDCDDQNVDKSD 794


>gi|37519712|ref|NP_923089.1| transcriptional regulator NrdR [Gloeobacter violaceus PCC 7421]
 gi|59799060|sp|Q7NPB2|NRDR_GLOVI RecName: Full=Transcriptional repressor NrdR
 gi|35210703|dbj|BAC88084.1| gll0143 [Gloeobacter violaceus PCC 7421]
          Length = 172

 Score = 42.1 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 18/97 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   +FD SK+ R +    +A E           ++I+ L +     L Q +   
Sbjct: 51  VIKRNGRREAFDRSKVLRGV---MIACEKTDVPA-----ELIEQLVDDLQAELQQRSSRE 102

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
           +     +I + V  +L++   +++   YV    +YR+
Sbjct: 103 VTSA--EIGEMV-LALLKP-LNEVA--YVRFASVYRK 133


>gi|257065806|ref|YP_003152062.1| hypothetical protein Apre_0290 [Anaerococcus prevotii DSM 20548]
 gi|256797686|gb|ACV28341.1| hypothetical protein Apre_0290 [Anaerococcus prevotii DSM 20548]
          Length = 132

 Score = 41.8 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G V  F   KI R+I  A  A + K A  +  +  I+ ++ +   +   +  K++
Sbjct: 46  VIKRSGSVEKFSKDKIERSIKNA--AGDEKAAMNTSDLAIIVDDVLDTLDSDPRKVYKTS 103

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                 +I++ ++ SL++ G+ K+   ++ Y
Sbjct: 104 ------EIKNYIKDSLLKEGYSKVYDSFISY 128


>gi|119719918|ref|YP_920413.1| ATP-cone domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119525038|gb|ABL78410.1| ATP-cone domain protein [Thermofilum pendens Hrk 5]
          Length = 187

 Score = 41.8 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K++   G +  F+ ++L   +  A  G  +  +  +  E    + DG +  ++   ++
Sbjct: 4   KVVKRSGKVEEFDREKLVRSMVNA--GAPEEVAVEIAKEVESKVRDGATTDEIRRYVL 59


>gi|88608794|ref|YP_506241.1| transcriptional regulator NrdR [Neorickettsia sennetsu str.
          Miyayama]
 gi|119372208|sp|Q2GE55|NRDR_NEOSM RecName: Full=Transcriptional repressor NrdR
 gi|88600963|gb|ABD46431.1| ATP cone domain protein [Neorickettsia sennetsu str. Miyayama]
          Length = 149

 Score = 41.8 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          ++K ++VIK+NG   SFD  K       A  +VE     R +  ++ +  L    + ++ 
Sbjct: 45 QLKEIKVIKKNGSCESFDREK-------AMRSVEVALRKRPV-TRERVDELMNSVIYKIE 96

Query: 85 Q 85
          +
Sbjct: 97 R 97


>gi|227833299|ref|YP_002835006.1| transcriptional regulator, NrdR family [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184284|ref|ZP_06043705.1| transcriptional regulator NrdR [Corynebacterium aurimucosum ATCC
           700975]
 gi|254768004|sp|C3PGW4|NRDR_CORA7 RecName: Full=Transcriptional repressor NrdR
 gi|227454315|gb|ACP33068.1| transcriptional regulator, NrdR family [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 152

 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS------S 178
           R     A    +        L ++  +G    F+  +L   V+ AC G           +
Sbjct: 26  RRRRECAACKGRFTTIEKAVLSVVKRNGLAEPFSRDKLIRGVKRACQGRDVSDDALKKLA 85

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           + V      +    ++ +D+  A++   R L   E  Y +  +
Sbjct: 86  QEVEETVRSHGSSQVNANDIGLAILEPLRDL--DEVAYLRFAS 126


>gi|254388614|ref|ZP_05003848.1| hypothetical protein SSCG_01175 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702335|gb|EDY48147.1| hypothetical protein SSCG_01175 [Streptomyces clavuligerus ATCC
           27064]
          Length = 76

 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 314 IEMPQAFFMRVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
           +E PQ F +R A GLA  +TE+        Y  +S  +++ S+PTLFNSGTR   +SSC+
Sbjct: 2   VETPQHFMLRGACGLAEDDTERALDEDAALYRRMSRLYYLPSSPTLFNSGTRQSHMSSCY 61


>gi|78485745|ref|YP_391670.1| transcriptional regulator NrdR [Thiomicrospira crunogena XCL-2]
 gi|91208003|sp|Q31FS7|NRDR_THICR RecName: Full=Transcriptional repressor NrdR
 gi|78364031|gb|ABB41996.1| Conserved hypothetical protein containing DUF193 [Thiomicrospira
           crunogena XCL-2]
          Length = 154

 Score = 41.8 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 22/99 (22%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIK +G    FD  KI R ++KA      K    S  +  ++  + +Q     ++   S
Sbjct: 50  RVIKSDGNRERFDDDKIRRGLIKAL----EKRPVASEAIDQVVNRIHKQLTAEGVREIPS 105

Query: 90  ALIVHIEDIQDQVECSLMQS--GHHKITREYV----LYR 122
           + I          E  LM++     ++   YV    +YR
Sbjct: 106 SQIG---------EL-LMEALKELDQVA--YVRFASVYR 132


>gi|126175362|ref|YP_001051511.1| transcriptional regulator NrdR [Shewanella baltica OS155]
 gi|153001672|ref|YP_001367353.1| transcriptional regulator NrdR [Shewanella baltica OS185]
 gi|160876410|ref|YP_001555726.1| transcriptional regulator NrdR [Shewanella baltica OS195]
 gi|217972395|ref|YP_002357146.1| transcriptional regulator NrdR [Shewanella baltica OS223]
 gi|304410192|ref|ZP_07391811.1| ATP-cone domain protein [Shewanella baltica OS183]
 gi|307302097|ref|ZP_07581855.1| ATP-cone domain protein [Shewanella baltica BA175]
 gi|189030846|sp|A3D7C9|NRDR_SHEB5 RecName: Full=Transcriptional repressor NrdR
 gi|189030847|sp|A6WR51|NRDR_SHEB8 RecName: Full=Transcriptional repressor NrdR
 gi|189030848|sp|A9KYJ5|NRDR_SHEB9 RecName: Full=Transcriptional repressor NrdR
 gi|254768027|sp|B8E6W2|NRDR_SHEB2 RecName: Full=Transcriptional repressor NrdR
 gi|125998567|gb|ABN62642.1| ATP-cone domain protein [Shewanella baltica OS155]
 gi|151366290|gb|ABS09290.1| ATP-cone domain protein [Shewanella baltica OS185]
 gi|160861932|gb|ABX50466.1| ATP-cone domain protein [Shewanella baltica OS195]
 gi|217497530|gb|ACK45723.1| ATP-cone domain protein [Shewanella baltica OS223]
 gi|304351601|gb|EFM16000.1| ATP-cone domain protein [Shewanella baltica OS183]
 gi|306914135|gb|EFN44556.1| ATP-cone domain protein [Shewanella baltica BA175]
 gi|315268600|gb|ADT95453.1| ATP-cone domain protein [Shewanella baltica OS678]
          Length = 149

 Score = 41.8 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             F      + +VIKR+G    FD  K+   +     AVE +  S      D I+    +
Sbjct: 39  TTFEGAELVMPRVIKRDGSRQPFDEEKLQGGM---LRAVEKRPVS-----MDEIEQALSK 90

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             + L         V  E + + +   LM     K+   Y+    +YR 
Sbjct: 91  IKSTL--RATGEREVPSEMVGNLMMEQLMSLD--KVA--YIRFASVYRA 133


>gi|227504885|ref|ZP_03934934.1| NrdR family transcriptional regulator [Corynebacterium striatum
           ATCC 6940]
 gi|227198576|gb|EEI78624.1| NrdR family transcriptional regulator [Corynebacterium striatum
           ATCC 6940]
          Length = 107

 Score = 41.8 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS------SKIVLSETYKNMYDGLSESDL 198
           + ++  +G    F+  +L   V  AC G           ++ V      +    ++ +D+
Sbjct: 1   MLVVKRNGLAEPFSRDKLIRGVRRACQGRDVTDDALKKLAQEVEETVRSHGSSQVNANDI 60

Query: 199 ETALIFSSRTLIEKEPNYAKVTA 221
             A++   R L   E  Y +  +
Sbjct: 61  GLAILEPLRDL--DEVAYLRFAS 81


>gi|152965476|ref|YP_001361260.1| ATP-cone domain protein [Kineococcus radiotolerans SRS30216]
 gi|189030555|sp|A6W857|NRDR_KINRD RecName: Full=Transcriptional repressor NrdR
 gi|151359993|gb|ABS02996.1| ATP-cone domain protein [Kineococcus radiotolerans SRS30216]
          Length = 163

 Score = 41.8 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 6  DVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKA 53
            +       P+ +  F       + VIKR+G    F  +KI+  + KA
Sbjct: 22 GSSIRRRRQCPNCSKRFSTVETASLSVIKRSGAPEPFSRAKIASGVRKA 70


>gi|38234009|ref|NP_939776.1| transcriptional regulator NrdR [Corynebacterium diphtheriae NCTC
           13129]
 gi|59799119|sp|Q6NGS9|NRDR_CORDI RecName: Full=Transcriptional repressor NrdR
 gi|38200271|emb|CAE49955.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 151

 Score = 41.8 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS------S 178
           R      Q  ++       +L ++  +G    F+ +++ + V  AC G           +
Sbjct: 26  RRRRECTQCKNRFTTVEKAQLLVVKRNGLTEPFSREKVIVGVRRACQGRDVSDDALKRLA 85

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           + V      +    +  +++  A++   R L   E  Y +  +
Sbjct: 86  QQVEERVRLHGSSQIHANEIGLAILEPLREL--DEVAYLRFAS 126



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V+KRNG    F   K+   + +A                D +K L +Q   R+   
Sbjct: 44  AQLLVVKRNGLTEPFSREKVIVGVRRA--------CQGRDVSDDALKRLAQQVEERV--R 93

Query: 87  NKSALIVHIEDI 98
              +  +H  +I
Sbjct: 94  LHGSSQIHANEI 105


>gi|332706534|ref|ZP_08426595.1| putative transcriptional regulator [Lyngbya majuscula 3L]
 gi|332354418|gb|EGJ33897.1| putative transcriptional regulator [Lyngbya majuscula 3L]
          Length = 126

 Score = 41.4 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 22/92 (23%)

Query: 32  IKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           IKR+G   SFD SK    I RA  K            +  +   ++ L ++    L Q  
Sbjct: 2   IKRDGKRESFDRSKLLRGIVRACEK------------TGILHKRLEALVDEIEAELQQRF 49

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
              +I H  +I + V   L      ++   YV
Sbjct: 50  GREVISH--EIGELVLRYL--RSESEVA--YV 75


>gi|255692709|ref|ZP_05416384.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260621544|gb|EEX44415.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 775

 Score = 41.4 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 24/113 (21%)

Query: 1   MHPSKDVNKGDE--DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58
           ++P        E  ++    +   P  I  ++VI+    V   D  KI  ++  A +   
Sbjct: 491 LYPVGKSVTEGELSESDKGESIQEPATILPMKVIR----VLLIDDDKIQLSLTAAMLKQH 546

Query: 59  GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ-------DQVEC 104
           G  A    +++++I+ L       LL            DIQ       D V+ 
Sbjct: 547 GIDAVCCEQLEELIEQLRTSVFDVLLT-----------DIQMPAINGFDLVKL 588


>gi|326801475|ref|YP_004319294.1| restriction endonuclease [Sphingobacterium sp. 21]
 gi|326552239|gb|ADZ80624.1| restriction endonuclease [Sphingobacterium sp. 21]
          Length = 281

 Score = 41.4 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA--- 201
           +K+    G L+ F+ +RL+  + +  SG  + + ++V  +  K ++DG+S   L      
Sbjct: 1   MKVRKYSGELVDFDLQRLKGSLTK--SGASNETVELVWEKMNKTIFDGMSTKQLYRLAFQ 58

Query: 202 --------------LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
                         L  + R L      + K  AR          LT++  +    +H  
Sbjct: 59  LLKQQRNSLAARYSLKKALRDLGPTGYLFEKWVARLFEHTNH-HTLTSLILEGNAVSHEV 117

Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296
                 +     IE   +  +  +  +   + +L+  +    D  F + 
Sbjct: 118 DVIAQKDNDLLLIECKFRNTVDAKVSVTNPMYFLSRFVDLS-DKEFNFF 165


>gi|153809033|ref|ZP_01961701.1| hypothetical protein BACCAC_03337 [Bacteroides caccae ATCC 43185]
 gi|149128366|gb|EDM19585.1| hypothetical protein BACCAC_03337 [Bacteroides caccae ATCC 43185]
          Length = 763

 Score = 41.4 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 22/111 (19%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           ++P             +++   P  +  ++VI+    V   D  KI  ++  A +   G 
Sbjct: 491 LYPVGKSVSERALEEKTISAEDPVTLPPMKVIR----VLLIDDDKIQLSLTAAMLKQHGI 546

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ-------DQVEC 104
            A    +++++I+ L       LL            DIQ       D V+ 
Sbjct: 547 DAVCCEQLEELIEQLRTSVFDVLLT-----------DIQMPAINGFDLVKL 586


>gi|225388044|ref|ZP_03757768.1| hypothetical protein CLOSTASPAR_01778 [Clostridium asparagiforme
           DSM 15981]
 gi|225045897|gb|EEG56143.1| hypothetical protein CLOSTASPAR_01778 [Clostridium asparagiforme
           DSM 15981]
          Length = 710

 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
             ++VIK++G    F+  K+  A+ K A  A+     +    +   ++   E        
Sbjct: 4   SEIKVIKKDGTREDFNVQKVVAAVRKSAERAMIRFSKAEITFICQFVEEKAEDMEVT--- 60

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                  + I  + + VE +L +     + + Y  YR
Sbjct: 61  ------EIPIAQMHNVVEGALEKVNPQ-VAKSYRDYR 90


>gi|149178670|ref|ZP_01857255.1| hypothetical protein PM8797T_08339 [Planctomyces maris DSM 8797]
 gi|148842518|gb|EDL56896.1| hypothetical protein PM8797T_08339 [Planctomyces maris DSM 8797]
          Length = 151

 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 12/65 (18%)

Query: 29  VQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           ++VIK++G    FD  K    I  A  K              +++ I+  +  +      
Sbjct: 48  LKVIKKDGARVPFDRMKMVTGIETACYK--------RPVSPDQIESIVAQIEAEIYENFD 99

Query: 85  QHNKS 89
           +   S
Sbjct: 100 REVPS 104


>gi|108805661|ref|YP_645598.1| transcriptional regulator NrdR [Rubrobacter xylanophilus DSM 9941]
 gi|119372223|sp|Q1AS42|NRDR_RUBXD RecName: Full=Transcriptional repressor NrdR
 gi|108766904|gb|ABG05786.1| Ribonucleotide reductase regulator NrdR-like protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 156

 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  K+   + KA         ++     + I  + +Q    L +  +  
Sbjct: 51  VLKRDGRREPFDREKLRAGLEKA--------CAKQRVTGEQIDLIVDQIEAELRERRRHE 102

Query: 91  LIVHIEDIQDQV 102
           +      I D V
Sbjct: 103 VTSR--RIGDMV 112


>gi|329889479|ref|ZP_08267822.1| transcriptional regulator NrdR [Brevundimonas diminuta ATCC 11568]
 gi|328844780|gb|EGF94344.1| transcriptional regulator NrdR [Brevundimonas diminuta ATCC 11568]
          Length = 157

 Score = 41.4 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 21/103 (20%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKIS----RAIMK 52
            PS          + P     F      +++ + ++KRNG  T FD  K+      A+ K
Sbjct: 17  RPSDDGAAIRRRRSCPQCNGRFTTFERVQLRELVILKRNGRRTPFDRDKLERSLGIALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95
                            D ++ L  + V +L    ++ +  HI
Sbjct: 77  ------------RPVQPDQVELLVSRIVRQLESLGETEIPSHI 107


>gi|46200162|ref|YP_005829.1| transcriptional regulator NrdR [Thermus thermophilus HB27]
 gi|55980103|ref|YP_143400.1| transcriptional regulator NrdR [Thermus thermophilus HB8]
 gi|59799122|sp|Q72GI8|NRDR_THET2 RecName: Full=Transcriptional repressor NrdR
 gi|81600576|sp|Q5SM09|NRDR_THET8 RecName: Full=Transcriptional repressor NrdR
 gi|46197790|gb|AAS82202.1| putative regulatory protein [Thermus thermophilus HB27]
 gi|55771516|dbj|BAD69957.1| ATP-cone domain protein [Thermus thermophilus HB8]
          Length = 153

 Score = 41.4 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           +      L ++  DG    FN  +L   +  AC       S+ VL        D +S  +
Sbjct: 42  ERTQLEPLMVVKRDGRKEPFNPDKLLRGLLLACEKRPV--SEEVLRRFAYTFEDQVSGPE 99

Query: 198 L--ETALIFSSRTLIE-KEPNYAKVTA 221
           +  E   + +   L E     Y +  +
Sbjct: 100 ITSEEIGLKALAFLKELDHVAYIRFAS 126


>gi|320449732|ref|YP_004201828.1| transcriptional regulator NrdR [Thermus scotoductus SA-01]
 gi|320149901|gb|ADW21279.1| transcriptional regulator NrdR [Thermus scotoductus SA-01]
          Length = 153

 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           +      L ++  DG    FN  +L   +  AC   + V    VL        D ++  +
Sbjct: 42  ERTQLEPLMVVKRDGRREPFNPDKLLRGLLLACEK-RPVDP-EVLRRFAYTFEDQVTGPE 99

Query: 198 L--ETALIFSSRTLIE-KEPNYAKVTA 221
           +  E   + +   L +     Y +  +
Sbjct: 100 ISSEEIGLKAMAFLRDLDHVAYIRFAS 126


>gi|328553045|gb|AEB23537.1| SPbeta phage ribonucleoside-diphosphate reductase, alpha subunit
           [Bacillus amyloliquefaciens TA208]
          Length = 83

 Score = 41.4 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 501 LFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558
           +F P  V   +  Y  E +    Y+         + K     +A  L  ++  +  E+G+
Sbjct: 1   MFYPHSVYKEYGQYLDEMDINKMYDELVENPRLRKAKG----NARKLLEQLAILRSESGY 56

Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLC 585
           P+I F D  N   P +H+  V  SNLC
Sbjct: 57  PYIMFADNVNKVHPNEHISKVKFSNLC 83


>gi|186688096|gb|ACC86125.1| putative ribonucleotide reductase regulator NrdR-like protein
           [uncultured bacterium]
          Length = 151

 Score = 41.4 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 123 EERSDVRAAQ------SHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQD 175
           E+ + +R  +          +   I    + ++  DG+   F+ +++   + ++C     
Sbjct: 20  EDHTSIRRRRECLSCLKRFTTYEKIEDLPIYVIKRDGSREPFDKRKILNGILKSCEKRPV 79

Query: 176 --VSSKIVLSETYKNMYDGLSESDLETALI 203
              S + ++ +  + +++ + E ++ ++ I
Sbjct: 80  SISSIESIVDDIERVIFNSM-EQEINSSFI 108



 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
          VIKR+G    FD  KI   I+K   + E +  S S      I+++ +     +    
Sbjct: 51 VIKRDGSREPFDKRKILNGILK---SCEKRPVSISS-----IESIVDDIERVIFNSM 99


>gi|86141955|ref|ZP_01060479.1| hypothetical protein MED217_02450 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831518|gb|EAQ49974.1| hypothetical protein MED217_02450 [Leeuwenhoekiella blandensis
           MED217]
          Length = 280

 Score = 41.4 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEE--ACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199
              + I+   G +++F+  +L   +    A   L     + ++ +    +YDG++   + 
Sbjct: 2   KNPINIVKYSGDVVAFDVDKLINSLRRSQASEEL----IQQIVEQVEGQLYDGITTKKIY 57

Query: 200 TAL 202
              
Sbjct: 58  QMA 60


>gi|113952007|gb|ABI48943.1| NrdA [Enterobacteria phage TuIa]
          Length = 105

 Score = 41.4 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 12/84 (14%)

Query: 839 DDLKKIHATAFEIDPMW---LIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFI 888
           +    ++  A+++        +   +   KW+ Q+ S N Y D    +K       +   
Sbjct: 5   EHNMSLYDYAWKLAKKGNKPYLTQVAIMLKWVCQSASANTYYDPAVFEKGKVPMSVMLDD 64

Query: 889 YRQAWLMGLKTTYY--LRSRSATS 910
               W  G K  YY   R  S T 
Sbjct: 65  LLYFWYFGGKNLYYHNTRDGSGTD 88


>gi|303244200|ref|ZP_07330537.1| anaerobic ribonucleoside-triphosphate reductase
           [Methanothermococcus okinawensis IH1]
 gi|302485327|gb|EFL48254.1| anaerobic ribonucleoside-triphosphate reductase
           [Methanothermococcus okinawensis IH1]
          Length = 768

 Score = 41.4 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 6/165 (3%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203
           K++++  DG   +FN  +L   +  +    + + S  ++S     +YD +S   ++  + 
Sbjct: 11  KIEVVKKDGARENFNINKLVKSLLNSEVDYEYIDS--IVSVVCSKIYDKISTDGIKRIV- 67

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263
                L E +       A+    K   +V T+  +      +  M  L  E         
Sbjct: 68  --CEVLKEIDNQKGTKYAKNYQFKNVLKVRTSKNEFQPFDKYKIMNTLVDETGLDIKTAE 125

Query: 264 VKARLLHESMMDFDLVYLANDLKYER-DFAFEYLGLQILYDRYFL 307
             +  + + +   +L YL   +  E  +      GL+    ++  
Sbjct: 126 KISNEIEKEIKKLNLKYLTAPMIRELVNAKLIEHGLEEFRQKHTR 170


>gi|219847230|ref|YP_002461663.1| transcriptional regulator NrdR [Chloroflexus aggregans DSM 9485]
 gi|254767999|sp|B8G2S3|NRDR_CHLAD RecName: Full=Transcriptional repressor NrdR
 gi|219541489|gb|ACL23227.1| ATP-cone domain protein [Chloroflexus aggregans DSM 9485]
          Length = 174

 Score = 41.4 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 124 ERSDVRAAQSHSKSDAPIAP-KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182
            R   RA      +   I    L ++  DGT   ++ +++   V  AC   + VS+  + 
Sbjct: 27  RRRKCRACGRRFTTYERIESVSLMVVKKDGTREPYDREKIARGVRTACYR-RPVSADAIE 85

Query: 183 SETYKNMYDGLSESD 197
               +     ++   
Sbjct: 86  QLVNEVETAVMATDQ 100


>gi|331090823|ref|ZP_08339669.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330399682|gb|EGG79344.1| anaerobic ribonucleoside-triphosphate reductase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 706

 Score = 41.4 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 21/100 (21%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIK++G    F+  K+  A+ K A+ A+          +   ++   ++         
Sbjct: 2   IKVIKKDGTKEDFNVQKVIVAVNKSAYRALIKFTEEDLDFICKFVEEEVQKM-------- 53

Query: 88  KSALIVHIEDI-----QDQVECSLMQSGHHKITREYVLYR 122
                  +E+I      + VE +L +     + + Y  YR
Sbjct: 54  ------GVEEIRIAQMHNVVEGALEKVNP-VVAKSYRDYR 86


>gi|148242053|ref|YP_001227210.1| ribonucleotide reductase [Synechococcus sp. RCC307]
 gi|147850363|emb|CAK27857.1| Ribonucleotide reductase [Synechococcus sp. RCC307]
          Length = 791

 Score = 41.4 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 73/273 (26%), Gaps = 14/273 (5%)

Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585
           +        +VF    ++ + ++ +T  F +G   I F      RS    +         
Sbjct: 335 DALRMANHTRVFHTRPSLEVVQEAVTKQFHSGEGAIQFAPEAIARSNADLLTTAELRQEF 394

Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645
            EI      +E                 N  +  +     R     L+   +I       
Sbjct: 395 QEIYCEQGRQEA----------GRWLQLNHPEITEAELEHRLGRYGLNPCGEILGADFHC 444

Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705
                H +R     L G   A     +  A         E             V      
Sbjct: 445 NLAEVHLNRLDPDDLEGQSDAFRAAGLSVACLLNHRFEVERYRQSRAWDPIVGVSFTGLF 504

Query: 706 GAYSSFKGSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762
             +    G+ W +      P  + GL  + ++   + R      + +       G+R  N
Sbjct: 505 DFFVHAFGTPWLEWWAAGRPETAEGLAFKEQEAAFLARWKTTVNEAVWDYCDRHGLRRPN 564

Query: 763 -CMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794
            C  + P  T + + G +    P     +++  
Sbjct: 565 RCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRI 597


>gi|332297834|ref|YP_004439756.1| Transcriptional repressor nrdR [Treponema brennaborense DSM 12168]
 gi|332180937|gb|AEE16625.1| Transcriptional repressor nrdR [Treponema brennaborense DSM 12168]
          Length = 154

 Score = 41.4 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 18/98 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD SK+ + I +A      +    S     +I+N+  +     L   +++
Sbjct: 51  VVKRDGRRQPFDRSKLEKGIDRAL-----EKRPVSST---MIENIVSEIEDAALIKGRTS 102

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITR-EYV----LYRE 123
             +   ++ D V   L     H I +  Y+    +YR 
Sbjct: 103 REISTAELGDLVLEKL-----HAIDKVAYIRFASVYRH 135


>gi|83311439|ref|YP_421703.1| transcriptional regulator NrdR [Magnetospirillum magneticum AMB-1]
 gi|114152100|sp|Q2W4T1|NRDR3_MAGMM RecName: Full=Transcriptional repressor nrdR 3
 gi|82946280|dbj|BAE51144.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 153

 Score = 41.0 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 27/129 (20%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKI----SRAIMK 52
            P++D        + P     F      +I+ + VIK++GG + FD  K+      A+ K
Sbjct: 17  RPTEDNSAIRRRRSCPECGSRFTTFERVQIRDLVVIKKDGGRSPFDRDKVLKSLRIALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + I+ +      RL +      +   + I + V   LM     
Sbjct: 77  ------------RPVDDEQIERIVNGIHRRL-ESMGENEVPS-KFIGELVMEVLMDLD-- 120

Query: 113 KITREYVLY 121
           K+   YV Y
Sbjct: 121 KVA--YVRY 127


>gi|88807803|ref|ZP_01123314.1| hypothetical protein WH7805_06571 [Synechococcus sp. WH 7805]
 gi|88787842|gb|EAR18998.1| hypothetical protein WH7805_06571 [Synechococcus sp. WH 7805]
          Length = 158

 Score = 41.0 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 18/97 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKRNG   +F  SK+   + +A      K      R++ I+ +L       L+   ++ 
Sbjct: 51  VIKRNGNREAFSRSKLLHGLSRA----CEKTGLAPERLETIVDDL------ELILQQRNG 100

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             V   DI + V   L   G  ++   Y+    +YR+
Sbjct: 101 REVSSHDIGELVLEQL--KGLSEVA--YIRFASVYRQ 133


>gi|170289638|ref|YP_001736454.1| ATP-cone domain-containing protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173718|gb|ACB06771.1| ATP-cone domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 115

 Score = 41.0 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI-----RVQDIIKNLTEQTVTRLL 84
           +V KRNG    F   KI  A++KA  +VE             R ++ ++  + +    +L
Sbjct: 33  KVRKRNGKEEDFSKMKIVSALIKAGSSVELADKIAEECESKFRGREYVE--SSEIREFVL 90

Query: 85  QHNKSALIVHIED 97
              K       E+
Sbjct: 91  SRLKEVEKDSYEN 103


>gi|289810234|ref|ZP_06540863.1| anaerobic ribonucleoside triphosphate reductase [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 47

 Score = 41.0 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73
          V+KR+G    F   +I  AI++A  A     A     V +++ 
Sbjct: 3  VMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAEVVS 45


>gi|254420966|ref|ZP_05034690.1| transcriptional regulator NrdR [Brevundimonas sp. BAL3]
 gi|196187143|gb|EDX82119.1| transcriptional regulator NrdR [Brevundimonas sp. BAL3]
          Length = 161

 Score = 41.0 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 21/92 (22%)

Query: 2  HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKIS----RAIMK 52
           PS          + P+    F      +++ + ++KRNG  T FD  K+      A+ K
Sbjct: 17 RPSDDGSAIRRRRSCPNCNGRFTTFERVQLRELVILKRNGRRTPFDRDKLERSLGVALRK 76

Query: 53 AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
                           + ++ +  + V +L 
Sbjct: 77 ------------RPVQPEQVEQMVNRIVRQLE 96


>gi|327182704|gb|AEA31151.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           amylovorus GRL 1118]
          Length = 731

 Score = 41.0 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
                     P + +   DG+   F   +LEM++     GL DV   I+LS+    + D 
Sbjct: 3   KQELEQKLETPTMFV-KRDGSKYPFELFKLEMVIHAL--GLDDV-KTIILSKIMDKLDDD 58

Query: 193 -LSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            ++  D+  A   S   L   E     V  R
Sbjct: 59  TVTAQDVAAAFRQSLNELGYIEAAKKYVAYR 89


>gi|315037401|ref|YP_004030969.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           amylovorus GRL 1112]
 gi|312275534|gb|ADQ58174.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           amylovorus GRL 1112]
          Length = 731

 Score = 41.0 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
                     P + +   DG+   F   +LEM++     GL DV   I+LS+    + D 
Sbjct: 3   KQELEQKLETPTMFV-KRDGSKYPFELFKLEMVIHAL--GLDDV-KTIILSKIMDKLDDD 58

Query: 193 -LSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            ++  D+  A   S   L   E     V  R
Sbjct: 59  TVTAQDVAAAFRQSLNELGYIEAAKKYVAYR 89


>gi|325955871|ref|YP_004286481.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus 30SC]
 gi|325332436|gb|ADZ06344.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus 30SC]
          Length = 731

 Score = 41.0 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
                     P + +   DG+   F   +LEM++     GL DV   I+LS+    + D 
Sbjct: 3   KQELEQKLETPTMFV-KRDGSKYPFELFKLEMVIHAL--GLDDV-KTIILSKIMDKLDDD 58

Query: 193 -LSESDLETALIFSSRTLIEKEPNYAKVTAR 222
            ++  D+  A   S   L   E     V  R
Sbjct: 59  TVTAQDVAAAFRQSLNELGYIEAAKKYVAYR 89


>gi|311739626|ref|ZP_07713461.1| transcriptional regulator NrdR [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305442|gb|EFQ81510.1| transcriptional regulator NrdR [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 135

 Score = 41.0 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS------S 178
           R     A    +        L ++  +G    F+  +L   V  AC G           +
Sbjct: 9   RRRRECASCKGRFTTVEKAVLLVVKRNGLAEPFSRDKLIRGVRRACQGRDVSDDALKKLA 68

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           + V      +    ++ +++  A++   R L   E  Y +  +
Sbjct: 69  QEVEETVRSHGSSQVNANEIGLAILEPLRDL--DEVAYLRFAS 109


>gi|227894222|ref|ZP_04012027.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           ultunensis DSM 16047]
 gi|227863942|gb|EEJ71363.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           ultunensis DSM 16047]
          Length = 738

 Score = 41.0 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 27/99 (27%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL-TEQTVTRLLQHNKS 89
           ++KR+G    F+  K+   +            + +  ++ I   L T+  V         
Sbjct: 22  IVKRDGARYPFEIFKLKMVLHN-----LDLDDAATAVLEKIAAKLATQDVVKA------- 69

Query: 90  ALIVHIEDIQDQVECS----LMQSGHHKITREYVLYREE 124
                    QD V  +    L + G+    + Y+ YR+ 
Sbjct: 70  ---------QD-VATAFRDSLNELGYLDEAKAYIAYRKH 98


>gi|281358685|ref|ZP_06245162.1| ATP-cone domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281314811|gb|EFA98847.1| ATP-cone domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 148

 Score = 41.0 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL----QDVS--SKIVLSETYKNMYD 191
           +  I  +LK++   G    F+  +L   +  AC        DV    + V +   ++   
Sbjct: 42  EGIIPEELKVVKRTGDREEFDRDKLRRGIANACYKRPVTPDDVDKAVEEVATSLLRDFDK 101

Query: 192 GLSESDL 198
            ++ S++
Sbjct: 102 EVASSEI 108


>gi|328947942|ref|YP_004365279.1| NrdR family transcriptional regulator [Treponema succinifaciens DSM
           2489]
 gi|328448266|gb|AEB13982.1| Transcriptional repressor nrdR [Treponema succinifaciens DSM 2489]
          Length = 152

 Score = 41.0 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA------CSGLQDVSSKIVLSETYK--NM 189
           +        ++  DG    F+ K++   +E A       +   D+    +  E Y    +
Sbjct: 42  EKIEEKPFMVVKRDGRRQPFDIKKVAKGIERALEKRPVSTDFIDLIVNEIEDEAYTAGKL 101

Query: 190 YDGLSESDLETALIF 204
              +S  ++   ++ 
Sbjct: 102 KREISTEEIGELVLK 116



 Score = 38.3 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 16/97 (16%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G    FD  K+++ I +A      +    S    D I  +  +         K  
Sbjct: 51  VVKRDGRRQPFDIKKVAKGIERAL-----EKRPVST---DFIDLIVNEIEDEAYTAGKLK 102

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             +  E+I + V   L  +   K+   Y+    +YR 
Sbjct: 103 REISTEEIGELVLKKL--NSVDKVA--YIRFASVYRH 135


>gi|300119356|ref|ZP_07057021.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cereus SJ1]
 gi|298723262|gb|EFI64039.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Bacillus cereus SJ1]
          Length = 140

 Score = 41.0 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 11/95 (11%)

Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537
             N +  + D F++ V  NA W L             G            +     + V+
Sbjct: 57  QFNVSVGVSDEFIQAVQNNAPWELVHKARPGATLLAQG-----------ARQRVDGLWVY 105

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572
             + A  LW  ++   ++   P I F    N  + 
Sbjct: 106 ATVPARDLWDTIMKSAYDFAEPGILFLGRINEDNN 140


>gi|19553132|ref|NP_601134.1| transcriptional regulator NrdR [Corynebacterium glutamicum ATCC
           13032]
 gi|62390768|ref|YP_226170.1| transcriptional regulator NrdR [Corynebacterium glutamicum ATCC
           13032]
 gi|145295833|ref|YP_001138654.1| transcriptional regulator NrdR [Corynebacterium glutamicum R]
 gi|38258802|sp|Q8NP88|NRDR_CORGL RecName: Full=Transcriptional repressor NrdR
 gi|189030535|sp|A4QET6|NRDR_CORGB RecName: Full=Transcriptional repressor NrdR
 gi|21324698|dbj|BAB99321.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Corynebacterium glutamicum ATCC 13032]
 gi|41326106|emb|CAF20269.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|140845753|dbj|BAF54752.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 150

 Score = 41.0 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS------S 178
           R     ++   +        L ++  +G    F+ +++   V  AC G           +
Sbjct: 26  RRRRECSKCEGRFTTIEKAVLLVVKRNGVTEPFSREKVVTGVRRACQGRDVSDDALKRLA 85

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           + V      N    +  +D+  A++   R L   E  Y +  +
Sbjct: 86  QQVEETVRSNGSSQVRANDIGLAILDPLREL--DEVAYLRFAS 126


>gi|46201727|ref|ZP_00208226.1| COG1327: Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains [Magnetospirillum
           magnetotacticum MS-1]
          Length = 141

 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 27/129 (20%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKI----SRAIMK 52
            P++D        + P     F      +I+ + VIK++GG + FD  K+      A+ K
Sbjct: 5   RPTEDNSAIRRRRSCPECGSRFTTFERVQIRDLVVIKKDGGRSPFDRDKVLKSLRIALRK 64

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
                            + I+ +      RL +      +   + I + V   LM     
Sbjct: 65  ------------RPVDDEQIERIVNGIHRRL-ESMGENEVPS-KFIGELVMEVLMDLD-- 108

Query: 113 KITREYVLY 121
           K+   YV Y
Sbjct: 109 KVA--YVRY 115


>gi|206900951|ref|YP_002251403.1| ATP cone domain protein [Dictyoglomus thermophilum H-6-12]
 gi|226732979|sp|B5YAD3|NRDR_DICT6 RecName: Full=Transcriptional repressor NrdR
 gi|206740054|gb|ACI19112.1| ATP cone domain protein [Dictyoglomus thermophilum H-6-12]
          Length = 150

 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYD---- 191
           +      + ++  DG    F+  +L   ++ A     + +   + ++ E   N+      
Sbjct: 42  ERIEEKPIMVIKKDGRREPFDRNKLLAGLQRAVVKRNIDNEKLEAIIDEIIANIRKQGIS 101

Query: 192 GLSESDLETALIFSSRTL 209
            ++  ++   ++   + L
Sbjct: 102 EITSKEIGKMVLEKLKDL 119


>gi|300858648|ref|YP_003783631.1| NrdR family transcriptional regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686102|gb|ADK29024.1| NrdR-family transcription regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206355|gb|ADL10697.1| Transcriptional repressor nrdR [Corynebacterium pseudotuberculosis
           C231]
 gi|302330911|gb|ADL21105.1| Transcriptional repressor nrdR [Corynebacterium pseudotuberculosis
           1002]
 gi|308276597|gb|ADO26496.1| Transcriptional repressor nrdR [Corynebacterium pseudotuberculosis
           I19]
          Length = 151

 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V+KRNG    F   K+   + +A               +D +K L +Q   R+ +H
Sbjct: 44  AQLLVVKRNGLTEPFSRDKVIVGVRRA--------CQGRDVSEDALKRLAQQVEERIRKH 95

Query: 87  NKSALIVHIEDI 98
             S   +H  DI
Sbjct: 96  GSSQ--IHANDI 105


>gi|257388564|ref|YP_003178337.1| phosphoenolpyruvate carboxylase [Halomicrobium mukohataei DSM
           12286]
 gi|257170871|gb|ACV48630.1| Phosphoenolpyruvate carboxylase [Halomicrobium mukohataei DSM
           12286]
          Length = 898

 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 79/280 (28%), Gaps = 45/280 (16%)

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ--------------DQVECSLMQS 109
            +  + + ++ L E     +     +     +E+I+              D VE +L + 
Sbjct: 4   HAREINEDVRELGELLGEVIEAQTSTEGFETVENIRTSSIDYRRGDADDRDDVERTLDRL 63

Query: 110 --GHHK-ITREYVLY------REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSK 160
                  + R +  Y       EER  VR                   + +G+       
Sbjct: 64  SPDMQDIVARAFTTYFELINLAEERQRVRE------------------IREGSQEGVLED 105

Query: 161 RLEMIVEEACS-GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219
            +   VE+    G    + + VL +           ++     + +   L     +   +
Sbjct: 106 SVTDAVEKLSERGADPETLERVLDDVLIEPTFTAHPTEARRKTVKA--KLRSVAGDLEVL 163

Query: 220 TARFLLEKLRREVLTTVYKKPQKATHH-EMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278
               L +  + ++   +  +        +++   PE     +        +   ++D   
Sbjct: 164 DEVRLTDSEQEDIEDDLAAEVTSLWQTPQVRDRRPEVTDEALNVQWYIENVLFEVIDEVY 223

Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318
             L + +  E D   +   L           +G+    P+
Sbjct: 224 DELEDAIDEEYDGDVDVPKLYEFRSWAGSDRDGNPFVTPE 263


>gi|123965581|ref|YP_001010662.1| transcriptional regulator NrdR [Prochlorococcus marinus str. MIT
           9515]
 gi|189029296|sp|A2BUU4|NRDR_PROM5 RecName: Full=Transcriptional repressor NrdR
 gi|123199947|gb|ABM71555.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domains [Prochlorococcus marinus str. MIT 9515]
          Length = 159

 Score = 41.0 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSG--------LQDVSSKIVLSETYKNMYDGLSES 196
           + ++  DG+   FN  +L   +  AC          +  V S  + S+  ++    +  S
Sbjct: 49  ISVLKKDGSRELFNKDKLVTGISRACEKTTFSREAIIDFVDS--IESQIIQDSNKDIKSS 106

Query: 197 DLETALIFSSRTLIEKEPNYAKVTA 221
            +   ++   R   E E  Y +  +
Sbjct: 107 QIGELILKGLRK--ENEVAYIRYAS 129


>gi|83858224|ref|ZP_00951746.1| hypothetical protein OA2633_01956 [Oceanicaulis alexandrii
          HTCC2633]
 gi|83853047|gb|EAP90899.1| hypothetical protein OA2633_01956 [Oceanicaulis alexandrii
          HTCC2633]
          Length = 116

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          +++ + VIK +G    FD  K++R++    +A + +        ++ ++ +    V RL 
Sbjct: 2  QLRDLHVIKSDGKREGFDRDKLARSV---LLASQKR-----AIERERVEQMISGIVRRLE 53

Query: 85 QHNKSALIVHI 95
                +   +
Sbjct: 54 SRGDPDVPASV 64


>gi|15678508|ref|NP_275623.1| hypothetical protein MTH480 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2621550|gb|AAB84986.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 90

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          + VIKR G    ++PSKI  ++ KA +             ++II+ + E    ++ 
Sbjct: 1  MNVIKRRGFREPYEPSKIRASLEKAAI----DAGYSPEEKREIIERVYETVKKKIE 52



 Score = 37.9 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYDGLS-ESDLETA 201
           + ++   G    +   ++   +E+A   +G      + ++   Y+ +   +  E ++++ 
Sbjct: 1   MNVIKRRGFREPYEPSKIRASLEKAAIDAGYSPEEKREIIERVYETVKKKIEVEEEIKSD 60

Query: 202 LIFSSRTLIEKEPNYAKVT 220
            I +   L E +     + 
Sbjct: 61  TIRACL-LTELDRCEPYIA 78


>gi|255325146|ref|ZP_05366252.1| transcriptional repressor NrdR [Corynebacterium tuberculostearicum
           SK141]
 gi|255297711|gb|EET77022.1| transcriptional repressor NrdR [Corynebacterium tuberculostearicum
           SK141]
          Length = 152

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS------S 178
           R     A    +        L ++  +G    F+  +L   V  AC G           +
Sbjct: 26  RRRRECASCKGRFTTVEKAVLLVVKRNGLAEPFSRDKLIRGVRRACQGRDVSDDALKKLA 85

Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           + V      +    ++ +++  A++   R L   E  Y +  +
Sbjct: 86  QEVEETVRSHGSSQVNANEIGLAILEPLRDL--DEVAYLRFAS 126


>gi|332670102|ref|YP_004453110.1| ATP-cone domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332339140|gb|AEE45723.1| ATP-cone domain protein [Cellulomonas fimi ATCC 484]
          Length = 177

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 6  DVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
            +       P     F   +   + V+KR+G    F   KI+  + KA           
Sbjct: 22 GASIRRRRQCPQCHRRFTTLETASLSVVKRSGVTEPFSREKIATGVRKA--------CQG 73

Query: 65 SIRVQDIIKNLTEQTVTRLLQH 86
              +D +  L ++    L   
Sbjct: 74 RPVSEDDLAVLAQRVEETLRSS 95


>gi|269219556|ref|ZP_06163410.1| transcriptional regulator NrdR [Actinomyces sp. oral taxon 848
          str. F0332]
 gi|269210798|gb|EEZ77138.1| transcriptional regulator NrdR [Actinomyces sp. oral taxon 848
          str. F0332]
          Length = 141

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
             +QVIKR+G    F   KI   + KA            +  +D +  L +    R+  
Sbjct: 31 TASLQVIKRSGAYEPFSRGKIISGVGKA--------CQGRLVSEDDLARLAQLVEERIRA 82

Query: 86 HNKSALIVH 94
          +  S +  H
Sbjct: 83 NGASQIEAH 91


>gi|119774152|ref|YP_926892.1| transcriptional regulator NrdR [Shewanella amazonensis SB2B]
 gi|189030694|sp|A1S4B6|NRDR_SHEAM RecName: Full=Transcriptional repressor NrdR
 gi|119766652|gb|ABL99222.1| ATP-cone domain protein [Shewanella amazonensis SB2B]
          Length = 149

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 19/109 (17%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             F      + +VIKR+G    FD  K+   ++KA   VE +  S      D I     +
Sbjct: 39  TTFEGAELVMPRVIKRDGTRQPFDEEKLRSGMLKA---VEKRPVSI-----DQIDQAMNK 90

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
             + L         V  E + + +  SL++    K+   Y+    +YR 
Sbjct: 91  IKSTL--RATGEREVPSEMVGNLMMDSLIELD--KVA--YIRFASVYRA 133


>gi|114570086|ref|YP_756766.1| ribonucleotide reductase regulator NrdR-like protein [Maricaulis
           maris MCS10]
 gi|119372203|sp|Q0APF9|NRDR_MARMM RecName: Full=Transcriptional repressor NrdR
 gi|114340548|gb|ABI65828.1| Ribonucleotide reductase regulator NrdR-like protein [Maricaulis
           maris MCS10]
          Length = 161

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 31/131 (23%)

Query: 2   HPSKDVN-KGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            P++D N        PS A  F      +++ + V+K++G    FD  K    I  A+ K
Sbjct: 17  RPAEDGNAIRRRRQCPSCAARFTTFERVQLRELTVMKKSGRRVPFDREKLNRSIQLAMQK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ--SG 110
                           ++I  +  +Q ++ +++  +S     +    D+V   +M+    
Sbjct: 77  ----------------RNIEPDRIDQMISGIVRRLESTGETDVTS--DRVGELVMEGLKN 118

Query: 111 HHKITREYVLY 121
              +   YV Y
Sbjct: 119 LDAVA--YVRY 127


>gi|217968077|ref|YP_002353583.1| ATP-cone domain protein [Dictyoglomus turgidum DSM 6724]
 gi|226732980|sp|B8E395|NRDR_DICTD RecName: Full=Transcriptional repressor NrdR
 gi|217337176|gb|ACK42969.1| ATP-cone domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 150

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEAC--SGLQDVSSKIVLSETYKNMYD---- 191
           +      + ++  DG    F+  +L   ++ A     + +   + ++ E   N+      
Sbjct: 42  ERIEEKPIMVIKKDGRREPFDRNKLLAGLQRAVVKRNIDNEKLEAIIDEIITNIRKQGVS 101

Query: 192 GLSESDLETALIFSSRTL 209
            ++  ++   ++   + L
Sbjct: 102 EITSKEIGKMVLEKLKDL 119


>gi|158422886|ref|YP_001524178.1| ATP cone domain-containing protein [Azorhizobium caulinodans ORS
           571]
 gi|189030506|sp|A8I0I5|NRDR_AZOC5 RecName: Full=Transcriptional repressor NrdR
 gi|158329775|dbj|BAF87260.1| ATP cone domain protein [Azorhizobium caulinodans ORS 571]
          Length = 173

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 27/161 (16%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
            P++D          P     F      +++ + V+KR+G    FD  K++R++  A   
Sbjct: 17  RPTEDNTAIRRRRVCPDCGGRFTTFERVQLRELMVVKRSGRRVPFDRDKLARSVEIALR- 75

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITR 116
                  +     + ++ +    V +L     +   +  E I + V   L Q     +  
Sbjct: 76  -------KRPVETERVERMLSGLVRQLESLGDTE--ITSETIGEMVMEGLKQID--DVA- 123

Query: 117 EYV----LYREERSDVRAAQS---HSKSDAPIAPKLKIMMD 150
            YV    +YR  R + R  +S     +     A  L  +  
Sbjct: 124 -YVRFASVYRNFR-EARDFESLLDELQLGERKAEALAKLKR 162


>gi|323356537|ref|YP_004222933.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323272908|dbj|BAJ73053.1| predicted transcriptional regulator, consists of a Zn-ribbon and
          ATP-cone domains [Microbacterium testaceum StLB037]
          Length = 163

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 9/86 (10%)

Query: 6  DVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
           ++       P     F       + VIKR+G V  F   K+   + KA           
Sbjct: 22 GLSIRRRRQCPKCGGRFSTVETASLNVIKRSGVVEPFSREKVMSGVRKA--------CQG 73

Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSA 90
                 +  L +Q    + Q   S 
Sbjct: 74 RPVTDADLAMLAQQVEEAIRQTGSSQ 99


>gi|33860871|ref|NP_892432.1| transcriptional regulator NrdR [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|59799062|sp|Q7V2Y6|NRDR_PROMP RecName: Full=Transcriptional repressor NrdR
 gi|33633813|emb|CAE18772.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 159

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSG--------LQDVSSKIVLSETYKNMYDGLSES 196
           + ++  DG+   FN  +L   +  AC          +  V S  + S+  ++    +  S
Sbjct: 49  ISVIKKDGSRELFNKDKLVTGISRACEKTTFSRESIINFVDS--IESQIVQDSNKDIKSS 106

Query: 197 DLETALIFSSRTLIEKEPNYAKVTA 221
            +   ++   R   E E  Y +  +
Sbjct: 107 QIGELILKGLRK--ENEVAYIRYAS 129


>gi|315499927|ref|YP_004088730.1| ATP-cone domain protein [Asticcacaulis excentricus CB 48]
 gi|315417939|gb|ADU14579.1| ATP-cone domain protein [Asticcacaulis excentricus CB 48]
          Length = 189

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          +++ + ++KR+G  T FD  K+ R+I    +A   +         + I  +    V +L 
Sbjct: 45 QLRELIIVKRSGRRTPFDREKLERSIS---LATRKRQ-----IDPERIDRMVSGIVRQLE 96


>gi|288957851|ref|YP_003448192.1| ATP-cone domain protein [Azospirillum sp. B510]
 gi|288910159|dbj|BAI71648.1| ATP-cone domain protein [Azospirillum sp. B510]
          Length = 155

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 23/127 (18%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
            P++D          PS +  F      +++ + V+K NG    FD  K+ R++  A   
Sbjct: 17  RPTEDNSAIRRRRFCPSCSARFTTFERVQLRELTVVKSNGQREPFDREKLLRSMKIALRK 76

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ--DQVECSLMQSGHHKI 114
               G      V  +++ L     + +        I+  E +Q  DQV            
Sbjct: 77  RPIDGDRIDRVVNSMVRQLESSGESEIPSKQIGEKIM--EALQTMDQV------------ 122

Query: 115 TREYVLY 121
              Y+ Y
Sbjct: 123 --AYIRY 127


>gi|305667456|ref|YP_003863743.1| hypothetical protein FB2170_14453 [Maribacter sp. HTCC2170]
 gi|88709504|gb|EAR01737.1| hypothetical protein FB2170_14453 [Maribacter sp. HTCC2170]
          Length = 280

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200
           ++ + +++   G    F+  +L   +  + +    VS   +L +    +Y G+S  ++  
Sbjct: 2   VSQEFQVVKSSGERTRFSLTKLRKSLVRSGADEALVS--RILDQVRDELYQGISTKEIYN 59


>gi|302554608|ref|ZP_07306950.1| transcriptional regulator NrdR [Streptomyces viridochromogenes DSM
           40736]
 gi|302472226|gb|EFL35319.1| transcriptional regulator NrdR [Streptomyces viridochromogenes DSM
           40736]
          Length = 186

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIK-GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
             +       P  +  F       + V+KR+G    F  +KI   + KA           
Sbjct: 22  GTSIRRRRQCPDCSRRFTTVETCSLMVVKRSGVTEPFSRTKIINGVRKA--------CQG 73

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVH 94
               +D +  L ++    +     + L  H
Sbjct: 74  RPVTEDALAQLGQRVEEAVRATGSAELTTH 103


>gi|239928524|ref|ZP_04685477.1| transcriptional regulator NrdR [Streptomyces ghanaensis ATCC 14672]
 gi|291436849|ref|ZP_06576239.1| transcriptional repressor nrdR [Streptomyces ghanaensis ATCC 14672]
 gi|291339744|gb|EFE66700.1| transcriptional repressor nrdR [Streptomyces ghanaensis ATCC 14672]
          Length = 185

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 6   DVNKGDEDAFPSLAYPFPEKIK-GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
             +       P  +  F       + V+KR+G    F  +KI   + KA           
Sbjct: 22  GTSIRRRRQCPDCSRRFTTVETCSLMVVKRSGVTEPFSRTKIINGVRKA--------CQG 73

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVH 94
               +D +  L ++    +     + L  H
Sbjct: 74  RPVTEDALAQLGQRVEEAVRATGSAELTTH 103


>gi|144897823|emb|CAM74687.1| Protein of unknown function DUF193 [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 155

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 27/129 (20%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            P++D        + P     F      +I+ + VIK++G  + FD  K    +  A+ K
Sbjct: 17  RPTEDNSAIRRRRSCPECGSRFTTFERVQIRDLVVIKKDGSRSPFDRDKLLKSLRIALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHH 112
               VE          ++ ++ +      RL +      +   + I + V   LM     
Sbjct: 77  --RPVE----------EEQVERIANGIHRRL-ESMGENEVPS-KYIGELVMDVLMDLD-- 120

Query: 113 KITREYVLY 121
           K+   YV Y
Sbjct: 121 KVA--YVRY 127


>gi|325263812|ref|ZP_08130545.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
 gi|324030850|gb|EGB92132.1| anaerobic ribonucleoside-triphosphate reductase [Clostridium sp.
           D5]
          Length = 706

 Score = 40.6 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           + V+K++G    F+  K+  A+ K A+ A+            + +  +      ++    
Sbjct: 2   MHVVKKDGTKEDFNVQKVVVAVNKSAYRALIKFTD-------EELDYICRFVEEKVQSMA 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
            S   + I ++ + VE +L +     + + Y  YR
Sbjct: 55  ISD--IPIAEMHNVVEGALEKVNP-TVAKSYRDYR 86


>gi|322368527|ref|ZP_08043095.1| transcriptional regulator NrdR [Haladaptatus paucihalophilus DX253]
 gi|320551811|gb|EFW93457.1| transcriptional regulator NrdR [Haladaptatus paucihalophilus DX253]
          Length = 165

 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSK 179
           R  R   R +   +  + P    L++   DG + SF+ ++L   +E A     + +    
Sbjct: 25  RRRRECQRCSFRFTTYERPEWDSLQVKKRDGNIESFSREKLRAGIERAVEKRHVSEADVT 84

Query: 180 IVLSETYKNMYDG----LSESDLETALIFSSRTL 209
            ++      + +     +S S +   +    R L
Sbjct: 85  ALVEAVESELGNRETRIVSSSLVGDLVSERLREL 118



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            +QV KR+G + SF   K+   I +A   VE +  S     +  +  L E   + L    
Sbjct: 47  SLQVKKRDGNIESFSREKLRAGIERA---VEKRHVS-----EADVTALVEAVESELGNR- 97

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYV 119
               IV    + D V   L      ++   Y+
Sbjct: 98  -ETRIVSSSLVGDLVSERL--RELDQVA--YI 124


>gi|254444191|ref|ZP_05057667.1| transcriptional regulator NrdR [Verrucomicrobiae bacterium DG1235]
 gi|198258499|gb|EDY82807.1| transcriptional regulator NrdR [Verrucomicrobiae bacterium DG1235]
          Length = 153

 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181
           S ++  +   L +   DG    F+  ++   +  AC   + V ++ +
Sbjct: 39  STTEQVLRENLYVTKRDGRREDFDKAKIIYSLRRACQK-RPVDAEQI 84



 Score = 39.1 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + + V KR+G    FD +KI  ++ +A      K    + ++  +++++ +   +     
Sbjct: 47  ENLYVTKRDGRREDFDKAKIIYSLRRA----CQKRPVDAEQINILVEDMIDALESEFGME 102

Query: 87  NKSALI 92
             S+ I
Sbjct: 103 FPSSAI 108


>gi|260575297|ref|ZP_05843297.1| ATP-cone domain protein [Rhodobacter sp. SW2]
 gi|259022557|gb|EEW25853.1| ATP-cone domain protein [Rhodobacter sp. SW2]
          Length = 155

 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 2   HPSKD-VNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMA 56
            P++D V+       P+    F      +++ + VIK +G    FD SK+ RAI  A   
Sbjct: 17  RPAEDHVSIRRRRFCPACGGRFTTYERVQLRDLVVIKSSGKREDFDRSKLERAIRIAM-- 74

Query: 57  VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108
                  +     + I  +    V RL +      I     I D V  SL +
Sbjct: 75  ------QKRPIDPERIDQMISGIVRRL-ESLGETDIPS-RTIGDIVMESLAR 118


>gi|288920760|ref|ZP_06415060.1| ATP-cone domain protein [Frankia sp. EUN1f]
 gi|288347836|gb|EFC82113.1| ATP-cone domain protein [Frankia sp. EUN1f]
          Length = 193

 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ-DIIKNLTEQTVTRLLQ 85
             ++V KR+G    F  +K+   + KA          +   V+ D +  L E+    +  
Sbjct: 44  ASLRVRKRSGATEPFSRAKVIVGVRKA---------CQGRPVRSDDLALLAERVEETV-- 92

Query: 86  HNKSALIVHIEDI 98
            +  +  V  ED+
Sbjct: 93  RSSGSAEVAAEDV 105


>gi|254796730|ref|YP_003081566.1| transcriptional regulator NrdR [Neorickettsia risticii str.
          Illinois]
 gi|254589978|gb|ACT69340.1| transcriptional regulator NrdR [Neorickettsia risticii str.
          Illinois]
          Length = 149

 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
          ++K ++VIK+NG   SFD  K       A  +VE     R +  ++ +  L    + ++ 
Sbjct: 45 QLKEIKVIKKNGSCESFDREK-------AMRSVEIALRKRPV-TRERVDELMNCVIYKIE 96

Query: 85 Q 85
          +
Sbjct: 97 R 97


>gi|170701724|ref|ZP_02892662.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gi|170133359|gb|EDT01749.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 470

 Score = 40.6 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 31/148 (20%)

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G R S  + + P A I  + G+         N Y +S  +    + ++     L++  L+
Sbjct: 236 GGRYSRLLTLGPYAAIPLLFGL------FIANEYNRSWEAYYVNIYDNLFDFALERLGLY 289

Query: 817 DEAMISD---LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE---SASRRQKWIDQA 870
               +++   +    G          D              WL+      +  Q W+D  
Sbjct: 290 YSTSLNNGAGILSVLGWDQGHPMFTFD--------------WLLRFPVIGATLQPWLDSG 335

Query: 871 QSLNLYLDEPSGKKLDF-----IYRQAW 893
            S+NL+L+  +  + +      ++   W
Sbjct: 336 DSINLFLNGYADPEFNNPSGIFVHFYEW 363


>gi|300122389|emb|CBK22960.2| unnamed protein product [Blastocystis hominis]
          Length = 741

 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822
             ++ P+ T++ + G +  +      +Y++    G     N  LV  L++        I 
Sbjct: 475 TTSVKPSGTVSLLAGSTPGMHFPESRIYIRRMRMGK----NDPLVAPLRRAGYSVVPAIG 530

Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNL-YLDEP 880
             +        ++ +P +++     + E+     +  A+  Q+ W D   S  + +  E 
Sbjct: 531 QEETTVVVEVPVK-LPANVR---VQS-EVSMFEQLSLAAFLQRYWADNQVSCTVTFDPES 585

Query: 881 SGKKLDFIYRQAWLMGLKTT 900
            G  +  + +  +   LK  
Sbjct: 586 EGPHIAQMLQY-FQYQLKGV 604


>gi|221135083|ref|ZP_03561386.1| transcriptional regulator NrdR [Glaciecola sp. HTCC2999]
          Length = 156

 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 24/100 (24%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +VIKR+G    F+  K+   + +A               + +     E+ + ++    ++
Sbjct: 50  RVIKRDGSREPFNEEKLRLGLQRAL------------EKRPVSTESVEKAINQIKSSLRA 97

Query: 90  ALIVHIEDIQDQVECS--LMQSGHHKITR-EYV----LYR 122
                +E      E    L+ +   ++ +  YV    +YR
Sbjct: 98  TGEREVES-----ELVGNLIMNELKELDKVAYVRFASVYR 132


>gi|153809895|ref|ZP_01962563.1| hypothetical protein RUMOBE_00276 [Ruminococcus obeum ATCC 29174]
 gi|149834073|gb|EDM89153.1| hypothetical protein RUMOBE_00276 [Ruminococcus obeum ATCC 29174]
          Length = 38

 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMA 56
          QV+KR+G +  F  +KI+ AI KAF A
Sbjct: 6  QVVKRDGEIAEFQMAKITSAIDKAFDA 32


>gi|74419028|gb|ABA03241.1| ribonucleoside diphosphate reductase large subunit [Enterobacteria
           phage RB15]
          Length = 86

 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 859 SASRRQKWIDQAQSLNLYLDEP--------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             +   KW+ Q+ S N Y ++P            +       W  G+K  YY  +R  + 
Sbjct: 9   QVAIMLKWVCQSASANTY-NDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 67

Query: 911 VEKSTLKGVDGK 922
            +   ++    +
Sbjct: 68  TDDYEIETPKAE 79


>gi|86439746|emb|CAJ19366.1| putative ribonucleoside diphosphate reductase [Triticum aestivum]
          Length = 175

 Score = 40.6 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848
           +  +W   + ++  Y D S+  I  IPDDLK ++ ++
Sbjct: 115 ELYIWSVVLKNNTIYKDVSVQKITDIPDDLKAVYKSS 151


>gi|197105137|ref|YP_002130514.1| predicted transcriptional regulator, consists of a Zn-ribbon and
          ATP-cone domains [Phenylobacterium zucineum HLK1]
 gi|226733012|sp|B4RB34|NRDR_PHEZH RecName: Full=Transcriptional repressor NrdR
 gi|196478557|gb|ACG78085.1| predicted transcriptional regulator, consists of a Zn-ribbon and
          ATP-cone domains [Phenylobacterium zucineum HLK1]
          Length = 155

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 21/92 (22%)

Query: 2  HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
           PS+           P     F      +++ + ++KR+G  T FD  K    IS A+ K
Sbjct: 17 RPSEDGAAIRRRRLCPQCEGRFTTFERVQLREITILKRSGRRTPFDRDKLARSISIALRK 76

Query: 53 AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
              VE           + I+ +    V +L 
Sbjct: 77 --RPVE----------PERIERMISTIVRQLE 96


>gi|32475165|ref|NP_868159.1| transcriptional regulator NrdR [Rhodopirellula baltica SH 1]
 gi|59799140|sp|Q7UG92|NRDR_RHOBA RecName: Full=Transcriptional repressor NrdR
 gi|32445706|emb|CAD78437.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
 gi|327540293|gb|EGF26879.1| transcriptional regulator NrdR [Rhodopirellula baltica WH47]
          Length = 156

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 118 YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS 177
           YV+ R +R      +  +  +   A  ++++  D T   F+ ++++  +E ACS     S
Sbjct: 23  YVV-RRKRLCQTCQRRFTTLEQIDALNVRVVKSDETREPFDREKIKRGIERACSKRAVTS 81

Query: 178 SK------IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
            +       +    Y      +  + +   ++    TL   E  Y +  +
Sbjct: 82  DEIEKTVQKIEEAIYAEFDMEIPTATIGEVVLRKLATL--DEVAYIRFAS 129



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
            V+V+K +     FD  KI R I +A      K A  S  ++  ++ + E          
Sbjct: 48  NVRVVKSDETREPFDREKIKRGIERA----CSKRAVTSDEIEKTVQKIEEAIYAEFDMEI 103

Query: 88  KSALIVHI 95
            +A I  +
Sbjct: 104 PTATIGEV 111


>gi|117928684|ref|YP_873235.1| ribonucleotide reductase regulator NrdR-like [Acidothermus
          cellulolyticus 11B]
 gi|189030494|sp|A0LUY9|NRDR_ACIC1 RecName: Full=Transcriptional repressor NrdR
 gi|117649147|gb|ABK53249.1| Ribonucleotide reductase regulator NrdR-like protein
          [Acidothermus cellulolyticus 11B]
          Length = 170

 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 6  DVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKA 53
                  + P     F       + VIKR+G +  F  +K+   + KA
Sbjct: 22 GTAIRRRRSCPECGRRFTTVETAALSVIKRSGVIEPFSRAKVIAGVRKA 70


>gi|227500677|ref|ZP_03930726.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217264|gb|EEI82608.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 132

 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           VIK++G V  F   KI R+I  A  + +     +   I V D+I +L             
Sbjct: 46  VIKKSGSVEKFSKEKIERSIKDAVASQKAAMTTSDIGIIVDDVIDSLDNDPRKVYKTS-- 103

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121
                   +I++ ++ +L++ G+ K+ +E++ Y
Sbjct: 104 --------EIKNYIKDALLKEGYSKVYKEFISY 128


>gi|154253349|ref|YP_001414173.1| ATP-cone domain-containing protein [Parvibaculum lavamentivorans
          DS-1]
 gi|189029241|sp|A7HX83|NRDR_PARL1 RecName: Full=Transcriptional repressor NrdR
 gi|154157299|gb|ABS64516.1| ATP-cone domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 162

 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 16/64 (25%)

Query: 25 KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
          +++ + +IK NG    FD  K    +  A+ K    VE          Q+ I+ +    V
Sbjct: 45 QLRELTIIKTNGRRVPFDRDKLMRSVQIAMRK--RPVE----------QERIERMVSGIV 92

Query: 81 TRLL 84
           RL 
Sbjct: 93 RRLE 96


>gi|54025768|ref|YP_120010.1| transcriptional regulator NrdR [Nocardia farcinica IFM 10152]
 gi|59799083|sp|Q5YT45|NRDR_NOCFA RecName: Full=Transcriptional repressor NrdR
 gi|54017276|dbj|BAD58646.1| putative ATP-binding protein [Nocardia farcinica IFM 10152]
          Length = 156

 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 5   KDVNKGDEDAFPSLAYPFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +        + P+    F       + V+KR+G    F   K+ R + +A          
Sbjct: 21  EGAAIRRRRSCPNCGRRFTTVETAILSVVKRSGVTEPFSREKVIRGVRRA---------C 71

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIE 96
           +   V D   NL  Q V   ++   S  +   E
Sbjct: 72  QGREVDDDALNLLAQQVEDAVRAKGSPEVPSHE 104


>gi|254519973|ref|ZP_05132029.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913722|gb|EEH98923.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 89

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           + ++K++G +  F+  K+  +I  A  A +         +  ++ ++ E+ +  L     
Sbjct: 1   MNIVKKDGRIEKFNIRKVKTSIENA--ARDSGTMVNESDLNILVNDV-EKVL--LKVRKD 55

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYV 119
           S +    E I    E  L + G + I R YV
Sbjct: 56  SLVTSSYEVIGTIFEI-LKRDGFNSILRAYV 85


>gi|302337970|ref|YP_003803176.1| ATP-cone domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635155|gb|ADK80582.1| ATP-cone domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 161

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 31  VIKRNGGVTSFDPSK----ISRAIMK-----A-----FMAVEGKGASRSIRVQDIIKNLT 76
           V+KR+G +  ++P+K    I+ A+ K     A     F A+E + A  +    +I     
Sbjct: 51  VVKRDGRLEPYEPAKLERGINIAMEKRPIGQATRESLFQAIEDEVAYGARNSHEIATKEL 110

Query: 77  EQTV 80
            + V
Sbjct: 111 GEIV 114


>gi|229138139|ref|ZP_04266737.1| Ribunucleotide reductase large subunit [Bacillus cereus BDRD-ST26]
 gi|228645484|gb|EEL01718.1| Ribunucleotide reductase large subunit [Bacillus cereus BDRD-ST26]
          Length = 79

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRK---ISAVALWRKMLTMLFETGHPWITFKDP 566
           ++  YGK  +    +          KV +K   ISA  +  K+  +  E+G+P++ FK  
Sbjct: 1   MYKEYGKHLDDIDIDEMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSN 60

Query: 567 CNIRSPQQHVGVVHSSNLC 585
            N + P + +G V  SNLC
Sbjct: 61  ANNQHPLKDIGTVKMSNLC 79


>gi|302379867|ref|ZP_07268350.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|303235394|ref|ZP_07322011.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302312345|gb|EFK94343.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493515|gb|EFL53304.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 127

 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K+ G V SFD  KI       F ++     S   ++     N+  + V + ++  K  
Sbjct: 45  VLKKLGSVESFDKEKI-------FHSIAQTSDSAGAKMNASDVNIIVEDVLKKMKSIKRN 97

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREY 118
           +    E I+  VE +L + G+ K+   Y
Sbjct: 98  VYPTKE-IRGYVEEALKEEGYGKVLEAY 124


>gi|58336507|ref|YP_193092.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus NCFM]
 gi|58253824|gb|AAV42061.1| anaerobic NTP reductase [Lactobacillus acidophilus NCFM]
          Length = 731

 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 23/133 (17%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+ +KR+G    F+  K+   I        G    +++ +  I+  L E+ V+       
Sbjct: 14  VKFVKRDGAKYPFELFKLEMVIHA-----LGLDDVKAVILSKIVNKLDEKIVSA------ 62

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                  +D+ D    SL + G+ +  ++YV YR+        +             +++
Sbjct: 63  -------QDVADAFRVSLNELGYIEAAKKYVSYRKA-----DEKKWLSQTDTKNRLERLV 110

Query: 149 MDDGTLISFNSKR 161
             D T+++ N+ +
Sbjct: 111 HKDPTIVNENANK 123


>gi|227903059|ref|ZP_04020864.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus ATCC 4796]
 gi|227869192|gb|EEJ76613.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 731

 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 23/133 (17%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           V+ +KR+G    F+  K+   I        G    +++ +  I+  L E+ V+       
Sbjct: 14  VKFVKRDGAKYPFELFKLEMVIHA-----LGLDDVKAVILSKIVNKLDEKIVSA------ 62

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148
                  +D+ D    SL + G+ +  ++YV YR+        +             +++
Sbjct: 63  -------QDVADAFRVSLNELGYIEAAKKYVSYRKA-----DEKKWLSQTDTKNRLERLV 110

Query: 149 MDDGTLISFNSKR 161
             D T+++ N+ +
Sbjct: 111 HKDPTIVNENANK 123


>gi|297564526|ref|YP_003683498.1| ATP-cone domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296848975|gb|ADH61990.1| ATP-cone domain protein [Meiothermus silvanus DSM 9946]
          Length = 165

 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
           +      L ++   G   +FN ++L   +  AC   + V ++ +      +  D +  ++
Sbjct: 42  ERAQVEPLMVLKRSGRKETFNPEKLLRGLLLACEK-RPVDTEAL-QRFAYSFEDNVDTAE 99

Query: 198 L--ETALIFSSRTLIEKEP-NYAKVTA 221
           +  E   + +   L E++P  Y +  +
Sbjct: 100 ITSEEIGLKALAFLREQDPVAYIRFAS 126


>gi|113951982|gb|ABI48925.1| NrdA [Enterobacteria phage RB3]
          Length = 87

 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 859 SASRRQKWIDQAQSLNLYLDEP--------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910
             +   KW+ Q+ S N Y ++P            +       W  G+K  YY  +R  + 
Sbjct: 10  QVAIMLKWVCQSASANTY-NDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 68

Query: 911 VEKSTLKGVDG 921
            +   ++    
Sbjct: 69  TDDYEIETPKA 79


>gi|254526216|ref|ZP_05138268.1| transcriptional regulator NrdR [Prochlorococcus marinus str. MIT
           9202]
 gi|221537640|gb|EEE40093.1| transcriptional regulator NrdR [Prochlorococcus marinus str. MIT
           9202]
          Length = 146

 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 16/87 (18%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204
           + ++  DG+   F+ ++L   +  AC            SE   N  DG+    ++ +   
Sbjct: 36  VSVIKKDGSRELFDKQKLFTGISRACE------KTNFSSEAIINFVDGIESQIVQDSNKD 89

Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRRE 231
              + I             +L+ LR+E
Sbjct: 90  IKSSQI----------GELILKNLRKE 106


>gi|326408786|gb|ADZ65851.1| transcriptional regulator NrdR [Brucella melitensis M28]
 gi|326538504|gb|ADZ86719.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 146

 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 33  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVT 92

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 93  SDEIGRLAMDALKGIDDI 110


>gi|209524016|ref|ZP_03272568.1| ATP-cone domain protein [Arthrospira maxima CS-328]
 gi|209495688|gb|EDZ95991.1| ATP-cone domain protein [Arthrospira maxima CS-328]
          Length = 176

 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 20/103 (19%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + VIKR+G   SFD SK+ R +++A      K    S  ++ +I+++  +   R  +
Sbjct: 46  LVPLTVIKRDGRRESFDGSKLLRGLVRA----CEKTGIASSELETMIEDIEAELQQRATR 101

Query: 86  HNKSALIVHIEDIQDQVECSLMQ-SGHHKITREYV----LYRE 123
              S  I          E  L +     ++   Y+    +YRE
Sbjct: 102 EVSSPEIS---------ELVLDRLKPISEVA--YIRFASVYRE 133


>gi|284051285|ref|ZP_06381495.1| transcriptional regulator NrdR [Arthrospira platensis str. Paraca]
 gi|291571970|dbj|BAI94242.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 179

 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 20/103 (19%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           +  + VIKR+G   SFD SK+ R +++A      K    S  ++ +I+++  +   R  +
Sbjct: 46  LVPLTVIKRDGRRESFDGSKLLRGLVRA----CEKTGIASSELETMIEDIEAELQQRATR 101

Query: 86  HNKSALIVHIEDIQDQVECSLMQ-SGHHKITREYV----LYRE 123
              S  I          E  L +     ++   Y+    +YRE
Sbjct: 102 EVSSPEIS---------ELVLDRLKPISEVA--YIRFASVYRE 133


>gi|260655521|ref|ZP_05861009.1| transcriptional regulator NrdR [Jonquetella anthropi E3_33 E1]
 gi|260629969|gb|EEX48163.1| transcriptional regulator NrdR [Jonquetella anthropi E3_33 E1]
          Length = 165

 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 19  AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
            Y   E  + + + K++G   +FD  KI R + +A    E    S      + I+     
Sbjct: 45  TYERAEGGQVLWIRKKDGRREAFDREKIVRGMSRA---CEKLPVSL-----EAIEEAAAS 96

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
              +L    +   I     I D V   L      K+   YV    +YRE
Sbjct: 97  VEKKL--RGEGGEIPS-SRIGDLVMEEL--RQLDKVA--YVRFAAVYRE 138


>gi|313884838|ref|ZP_07818590.1| transcriptional regulator NrdR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619529|gb|EFR30966.1| transcriptional regulator NrdR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 170

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 22/108 (20%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
             + V+KR+G    F   K+ R I++A        A +     + +  L  +   ++   
Sbjct: 47  APLLVVKRDGTRQEFSREKLLRGIVRA--------AEKRPVAHEQMAELAAKVEEQIRDW 98

Query: 87  NKSALIVHIE--DIQDQVECSLMQSGHHKITREYV----LYREERSDV 128
           +       IE  DI + V   LM+     +   Y+    +YRE +S  
Sbjct: 99  SDHE----IESRDIGELVMPLLMELDE--VA--YIRFASVYREFQSKE 138


>gi|217077585|ref|YP_002335303.1| transcriptional regulator NrdR [Thermosipho africanus TCF52B]
 gi|226736148|sp|B7ID85|NRDR_THEAB RecName: Full=Transcriptional repressor NrdR
 gi|217037440|gb|ACJ75962.1| transcriptional regulator NrdR [Thermosipho africanus TCF52B]
          Length = 151

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
          VIK++G    FD SKI   IMKA          ++    + ++ L +  V ++ +
Sbjct: 51 VIKKDGRREKFDRSKILSGIMKA--------CEKTNVTLEEMEKLVDDVVNQIQK 97


>gi|186683296|ref|YP_001866492.1| Chase sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186465748|gb|ACC81549.1| Chase sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 441

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV------EEA 169
           R Y+LYRE+    R  Q+    DA +  KL+  + D +       +L+ ++       + 
Sbjct: 42  RGYILYREQSELKRYYQAMQSLDAKVK-KLQQQLADDSYQQQQITKLKFLIAQRVQLSKQ 100

Query: 170 CSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLR 229
              L++V       +         + + +   L      +  +E    +++ R   + +R
Sbjct: 101 SINLKEVGKSSFAIQAPLLTQSNQNRNQIREMLTQ----MQAREEQLLQISVRHSQDNIR 156

Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281
             +L          +   +  +Y   + + ++      +      + +L  L
Sbjct: 157 NRMLIEFLGTF--LSFAILLGVYALLYQQLVKRQEAEAIQQTLAQEKELSEL 206


>gi|21748189|emb|CAD41959.1| ribonucleoside reductase large subunit [Pseudomonas fluorescens]
          Length = 55

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECEVCQ 954
           +ATS EKST+    GKLNAV   +    +        +    +    + +CE CQ
Sbjct: 3   AATSTEKSTINT--GKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 55


>gi|289642422|ref|ZP_06474568.1| ATP-cone domain protein [Frankia symbiont of Datisca glomerata]
 gi|289507767|gb|EFD28720.1| ATP-cone domain protein [Frankia symbiont of Datisca glomerata]
          Length = 153

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 5  KDVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
          +        + PS    F   +   ++VIKR+G    F   K+   + +A        A 
Sbjct: 21 EGAAIRRRRSCPSCGRRFTTIEEASLRVIKRSGVTEPFSRGKVIAGVRRA-CQGRPVQAD 79

Query: 64 RSIRVQDIIKN 74
             R+  ++++
Sbjct: 80 ALARLAQLVED 90


>gi|17987473|ref|NP_540107.1| transcriptional regulator NrdR [Brucella melitensis bv. 1 str. 16M]
 gi|23501653|ref|NP_697780.1| transcriptional regulator NrdR [Brucella suis 1330]
 gi|62289718|ref|YP_221511.1| transcriptional regulator NrdR [Brucella abortus bv. 1 str. 9-941]
 gi|82699647|ref|YP_414221.1| transcriptional regulator NrdR [Brucella melitensis biovar Abortus
           2308]
 gi|148560525|ref|YP_001258745.1| transcriptional regulator NrdR [Brucella ovis ATCC 25840]
 gi|161618733|ref|YP_001592620.1| transcriptional regulator NrdR [Brucella canis ATCC 23365]
 gi|163843037|ref|YP_001627441.1| transcriptional regulator NrdR [Brucella suis ATCC 23445]
 gi|189023967|ref|YP_001934735.1| NrdR family transcriptional regulator [Brucella abortus S19]
 gi|225852282|ref|YP_002732515.1| transcriptional regulator NrdR [Brucella melitensis ATCC 23457]
 gi|237815206|ref|ZP_04594204.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|254693510|ref|ZP_05155338.1| transcriptional regulator NrdR [Brucella abortus bv. 3 str. Tulya]
 gi|254697162|ref|ZP_05158990.1| transcriptional regulator NrdR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701539|ref|ZP_05163367.1| transcriptional regulator NrdR [Brucella suis bv. 5 str. 513]
 gi|254704088|ref|ZP_05165916.1| transcriptional regulator NrdR [Brucella suis bv. 3 str. 686]
 gi|254718883|ref|ZP_05180694.1| transcriptional regulator NrdR [Brucella sp. 83/13]
 gi|254730058|ref|ZP_05188636.1| transcriptional regulator NrdR [Brucella abortus bv. 4 str. 292]
 gi|256044452|ref|ZP_05447356.1| transcriptional regulator NrdR [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060882|ref|ZP_05451042.1| transcriptional regulator NrdR [Brucella neotomae 5K33]
 gi|256113296|ref|ZP_05454164.1| transcriptional regulator NrdR [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264213|ref|ZP_05466745.1| transcriptional repressor nrdR [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369198|ref|YP_003106706.1| hypothetical protein BMI_I763 [Brucella microti CCM 4915]
 gi|260545529|ref|ZP_05821270.1| transcriptional repressor nrdR [Brucella abortus NCTC 8038]
 gi|260563803|ref|ZP_05834289.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str. 16M]
 gi|260566664|ref|ZP_05837134.1| transcriptional repressor nrdR [Brucella suis bv. 4 str. 40]
 gi|260757743|ref|ZP_05870091.1| transcriptional repressor nrdR [Brucella abortus bv. 4 str. 292]
 gi|260761568|ref|ZP_05873911.1| transcriptional repressor nrdR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261213770|ref|ZP_05928051.1| transcriptional repressor nrdR [Brucella abortus bv. 3 str. Tulya]
 gi|261324880|ref|ZP_05964077.1| transcriptional repressor nrdR [Brucella neotomae 5K33]
 gi|261752089|ref|ZP_05995798.1| transcriptional repressor nrdR [Brucella suis bv. 5 str. 513]
 gi|261754748|ref|ZP_05998457.1| transcriptional repressor nrdR [Brucella suis bv. 3 str. 686]
 gi|265983869|ref|ZP_06096604.1| transcriptional repressor nrdR [Brucella sp. 83/13]
 gi|265990873|ref|ZP_06103430.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994709|ref|ZP_06107266.1| transcriptional repressor nrdR [Brucella melitensis bv. 3 str.
           Ether]
 gi|294852127|ref|ZP_06792800.1| transcriptional regulator NrdR [Brucella sp. NVSL 07-0026]
 gi|306838788|ref|ZP_07471621.1| conserved hypothetical protein [Brucella sp. NF 2653]
 gi|306841988|ref|ZP_07474662.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306843710|ref|ZP_07476310.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|54039976|sp|P67312|NRDR_BRUSU RecName: Full=Transcriptional repressor NrdR
 gi|54042710|sp|P67311|NRDR_BRUME RecName: Full=Transcriptional repressor NrdR
 gi|75497001|sp|Q57DY4|NRDR_BRUAB RecName: Full=Transcriptional repressor NrdR
 gi|91208373|sp|Q2YN94|NRDR_BRUA2 RecName: Full=Transcriptional repressor NrdR
 gi|189030514|sp|A9MAE6|NRDR_BRUC2 RecName: Full=Transcriptional repressor NrdR
 gi|189030515|sp|A5VPU8|NRDR_BRUO2 RecName: Full=Transcriptional repressor NrdR
 gi|189030516|sp|B0CL91|NRDR_BRUSI RecName: Full=Transcriptional repressor NrdR
 gi|226732955|sp|B2S514|NRDR_BRUA1 RecName: Full=Transcriptional repressor NrdR
 gi|254767997|sp|C0RIA3|NRDR_BRUMB RecName: Full=Transcriptional repressor NrdR
 gi|17983169|gb|AAL52371.1| putative regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|23347573|gb|AAN29695.1| conserved hypothetical protein TIGR00244 [Brucella suis 1330]
 gi|62195850|gb|AAX74150.1| conserved hypothetical protein TIGR00244 [Brucella abortus bv. 1
           str. 9-941]
 gi|82615748|emb|CAJ10744.1| Protein of unknown function DUF193:ATP cone domain [Brucella
           melitensis biovar Abortus 2308]
 gi|148371782|gb|ABQ61761.1| transcriptional regulator NrdR [Brucella ovis ATCC 25840]
 gi|161335544|gb|ABX61849.1| conserved hypothetical protein [Brucella canis ATCC 23365]
 gi|163673760|gb|ABY37871.1| conserved hypothetical protein [Brucella suis ATCC 23445]
 gi|189019539|gb|ACD72261.1| Protein of unknown function DUF193 [Brucella abortus S19]
 gi|225640647|gb|ACO00561.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
 gi|237790043|gb|EEP64253.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
 gi|255999358|gb|ACU47757.1| hypothetical protein BMI_I763 [Brucella microti CCM 4915]
 gi|260096936|gb|EEW80811.1| transcriptional repressor nrdR [Brucella abortus NCTC 8038]
 gi|260153819|gb|EEW88911.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str. 16M]
 gi|260156182|gb|EEW91262.1| transcriptional repressor nrdR [Brucella suis bv. 4 str. 40]
 gi|260668061|gb|EEX55001.1| transcriptional repressor nrdR [Brucella abortus bv. 4 str. 292]
 gi|260672000|gb|EEX58821.1| transcriptional repressor nrdR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260915377|gb|EEX82238.1| transcriptional repressor nrdR [Brucella abortus bv. 3 str. Tulya]
 gi|261300860|gb|EEY04357.1| transcriptional repressor nrdR [Brucella neotomae 5K33]
 gi|261741842|gb|EEY29768.1| transcriptional repressor nrdR [Brucella suis bv. 5 str. 513]
 gi|261744501|gb|EEY32427.1| transcriptional repressor nrdR [Brucella suis bv. 3 str. 686]
 gi|262765822|gb|EEZ11611.1| transcriptional repressor nrdR [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001657|gb|EEZ14232.1| transcriptional repressor nrdR [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094457|gb|EEZ18279.1| transcriptional repressor nrdR [Brucella melitensis bv. 2 str.
           63/9]
 gi|264662461|gb|EEZ32722.1| transcriptional repressor nrdR [Brucella sp. 83/13]
 gi|294820716|gb|EFG37715.1| transcriptional regulator NrdR [Brucella sp. NVSL 07-0026]
 gi|306276020|gb|EFM57729.1| conserved hypothetical protein [Brucella sp. BO1]
 gi|306287916|gb|EFM59333.1| conserved hypothetical protein [Brucella sp. BO2]
 gi|306406139|gb|EFM62385.1| conserved hypothetical protein [Brucella sp. NF 2653]
          Length = 158

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 45  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVT 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 105 SDEIGRLAMDALKGIDDI 122


>gi|331027991|ref|YP_004421541.1| class II ribonucleotide reductase [Synechococcus phage S-CBS2]
 gi|294805604|gb|ADF42443.1| class II ribonucleotide reductase [Synechococcus phage S-CBS2]
          Length = 766

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 10/161 (6%)

Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719
                 A +   +  AS    E   E  ++         V        Y    GS W   
Sbjct: 427 YQALYDAFYAAGLQVASLLQHEFVHERYQYSRNIDPIVGVSFTGLFDFYVHAFGSEW-LK 485

Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN-----SNCMAIAPTATIAN 774
                     A    E A         +   + VK    ++     +    + P  T + 
Sbjct: 486 WNMKGRKAGRAATIFEAAERDYLTKFREAAHEGVKAYCAKHLKRLPNRITTVQPAGTKSL 545

Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815
           + G S    P     +++    G    V   LV  L +   
Sbjct: 546 LTGASSGWHPPKAQRFIRRITLG----VQDPLVPALIEYGY 582


>gi|254689027|ref|ZP_05152281.1| transcriptional regulator NrdR [Brucella abortus bv. 6 str. 870]
 gi|256257277|ref|ZP_05462813.1| transcriptional regulator NrdR [Brucella abortus bv. 9 str. C68]
 gi|260754522|ref|ZP_05866870.1| transcriptional repressor nrdR [Brucella abortus bv. 6 str. 870]
 gi|260883550|ref|ZP_05895164.1| transcriptional repressor nrdR [Brucella abortus bv. 9 str. C68]
 gi|297248123|ref|ZP_06931841.1| transcriptional regulator NrdR [Brucella abortus bv. 5 str. B3196]
 gi|260674630|gb|EEX61451.1| transcriptional repressor nrdR [Brucella abortus bv. 6 str. 870]
 gi|260873078|gb|EEX80147.1| transcriptional repressor nrdR [Brucella abortus bv. 9 str. C68]
 gi|297175292|gb|EFH34639.1| transcriptional regulator NrdR [Brucella abortus bv. 5 str. B3196]
          Length = 158

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 45  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVT 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 105 SDEIGRLAMDALKGIDDI 122


>gi|1022896|gb|AAA91036.1| WI-1 adhesin [Ajellomyces dermatitidis]
          Length = 1146

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/331 (7%), Positives = 62/331 (18%), Gaps = 26/331 (7%)

Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW---TLFSPDEVSDLH 511
            H    E     ++                  D       +   W     +      D +
Sbjct: 144 HHPYDCELDSSHEDYSWPLWFKWCSGHGRHFYDCKWDNDHEKYDWPLWQYWCGSHDKDPY 203

Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571
           +    +F   Y+         +       S+   +   L   +    P+    +  + + 
Sbjct: 204 NCDWDKFHEKYDWELWNKWCKDPYNCEWDSSHEKYDWELWNKW-CKDPYNCEWNSFHEKY 262

Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCN---LGSINLLAH----------FANNQFDY 618
             +        +   E   +    +  + N       N              +++   DY
Sbjct: 263 DWELWNKWCKDSYNCEWDSSHEKYDWELWNKWCKDPYNCDWDSSHEKFDWGLWSHWCNDY 322

Query: 619 DKLASTIRT--AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL------ 670
           DK         + +  D  +     +                   G     +        
Sbjct: 323 DKYPYNCEWDSSHKKYDLTLWNRWCSSYDKDPYKCDWDLWNQLCSGNGHHFYDCDWDVSY 382

Query: 671 -HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729
                   + +   +               EL  +                +  D     
Sbjct: 383 PGYDSHLWDLLCTNNPYNCEWDSSHEKYDWELWDKWCKDPYNCDWDSSHEKYDWDLWNKW 442

Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760
            +       + +      EL  +        
Sbjct: 443 CKDPYNCEWDSSHEKYDWELWDKWCKDPYNC 473


>gi|288941494|ref|YP_003443734.1| ATP-cone domain-containing protein [Allochromatium vinosum DSM 180]
 gi|288896866|gb|ADC62702.1| ATP-cone domain protein [Allochromatium vinosum DSM 180]
          Length = 170

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 31/85 (36%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           +++KR+G    FD  K+   +M+A      +    S    D+                  
Sbjct: 50  RIVKRDGSRVPFDGQKLRAGMMRAL-----EKRPVSTEQMDLA----------------- 87

Query: 90  ALIVHIEDIQDQVECSLMQSGHHKI 114
                +  IQ     SLM SG  ++
Sbjct: 88  -----VARIQ----RSLMSSGESEV 103


>gi|330814593|ref|YP_004362768.1| hypothetical protein bgla_4p1550 [Burkholderia gladioli BSR3]
 gi|327374585|gb|AEA65936.1| hypothetical protein bgla_4p1550 [Burkholderia gladioli BSR3]
          Length = 445

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 31/148 (20%)

Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816
           G R +  +   P A I  + G+         N Y +S  +    + ++     L++  L+
Sbjct: 228 GGRYARLLTFGPYAAIPLLFGL------FIANEYNRSWEAYYVNIYDNLFDFALERLGLY 281

Query: 817 DEAMISD---LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE---SASRRQKWIDQA 870
               +++   +    G          D              WL+      +  Q W+D  
Sbjct: 282 YSTALNNGAGIVSVLGWNQGHPMFTFD--------------WLLRFPVIGATLQPWLDSG 327

Query: 871 QSLNLYLDEPSGKKLDF-----IYRQAW 893
            S+NL+L+  +  + +      ++   W
Sbjct: 328 DSINLFLNSYADPEFNNPSGIFVHFYEW 355


>gi|154502809|ref|ZP_02039869.1| hypothetical protein RUMGNA_00623 [Ruminococcus gnavus ATCC 29149]
 gi|153796692|gb|EDN79112.1| hypothetical protein RUMGNA_00623 [Ruminococcus gnavus ATCC 29149]
          Length = 706

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
           ++VIK++G    F+  K+  A+ K A+ A+            + +  +      ++    
Sbjct: 2   IRVIKKDGTKEDFNVQKVVVAVNKSAYRALIKFTD-------EELDYICRFVEEKVQTLG 54

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                V I ++ + VE +L +     + + Y  YR
Sbjct: 55  IQD--VPIAEMHNVVEGALEKVNP-VVAKSYRDYR 86


>gi|119492684|ref|ZP_01623863.1| hypothetical protein L8106_00235 [Lyngbya sp. PCC 8106]
 gi|119453022|gb|EAW34193.1| hypothetical protein L8106_00235 [Lyngbya sp. PCC 8106]
          Length = 199

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACS------GLQDVSSKIVLSETYKNMYDGLSESDL 198
           + ++  DG   SF+  +L   +  AC       G  +     + +E  +     +S  ++
Sbjct: 49  ITVIKRDGKRESFDRSKLLRGLIRACEKTGIETGALETVIDEIEAELQQRAVREVSSQEI 108

Query: 199 ETALIF 204
              ++ 
Sbjct: 109 GELVLE 114



 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SFD SK+ R +++A      +  +    + +I   L ++ V  +       
Sbjct: 51  VIKRDGKRESFDRSKLLRGLIRACEKTGIETGALETVIDEIEAELQQRAVREVSSQEIGE 110

Query: 91  LIVHIEDIQ 99
           L++  E +Q
Sbjct: 111 LVL--EQLQ 117


>gi|86605778|ref|YP_474541.1| transcriptional regulator NrdR [Synechococcus sp. JA-3-3Ab]
 gi|119372239|sp|Q2JVG1|NRDR_SYNJA RecName: Full=Transcriptional repressor NrdR
 gi|86554320|gb|ABC99278.1| transcriptional regulator, NrdR family [Synechococcus sp. JA-3-3Ab]
          Length = 200

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G   SF+ +KI + +M+A    +         V +I + L  + V  +       
Sbjct: 51  VIKRDGSRESFNRNKILQGVMRACQKTQVSVKQMEELVNEIEEKLQLEDVQEVTTLRIGE 110

Query: 91  LIVHIEDIQDQVECS 105
           +++  E +Q   E +
Sbjct: 111 MVL--ERLQRLSEVA 123


>gi|226942823|ref|YP_002797896.1| transcriptional regulator NrdR [Azotobacter vinelandii DJ]
 gi|259511999|sp|C1DLH3|NRDR_AZOVD RecName: Full=Transcriptional repressor NrdR
 gi|226717750|gb|ACO76921.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAF----MAVEGKGASRSIRVQDIIKN 74
             F      + +VIK++G    FD  K+   + +A     ++VE   A+      ++   
Sbjct: 39  TTFETAELVMPRVIKQDGSRQPFDEDKLRAGMQRALEKRPVSVERLEAAIGRIKHELRAT 98

Query: 75  LTEQTVTRLLQHN 87
              +  +R+L   
Sbjct: 99  GEREVKSRVLGEL 111


>gi|72162549|ref|YP_290206.1| transcriptional regulator NrdR [Thermobifida fusca YX]
 gi|91208401|sp|Q47MY6|NRDR_THEFY RecName: Full=Transcriptional repressor NrdR
 gi|71916281|gb|AAZ56183.1| Protein of unknown function DUF193 [Thermobifida fusca YX]
          Length = 153

 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 5  KDVNKGDEDAFPSLAYPFPEKIKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
          +        + P+    F  +   +  V KR+G    F  SKI   + +A          
Sbjct: 21 EGTAIRRRRSCPACERRFTTQETVLLMVTKRSGATEPFSRSKIIAGVRRA--------CQ 72

Query: 64 RSIRVQDIIKNLTEQTVTRLLQH 86
               +D +  L ++    +   
Sbjct: 73 GRPVTEDALALLGQRVEEEIRSR 95


>gi|295689068|ref|YP_003592761.1| hypothetical protein Cseg_1658 [Caulobacter segnis ATCC 21756]
 gi|295430971|gb|ADG10143.1| ATP-cone domain protein [Caulobacter segnis ATCC 21756]
          Length = 157

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 21/92 (22%)

Query: 2  HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
           PS+           P     F      +++ + ++KR+G  + FD  K    I+ A+ K
Sbjct: 17 RPSEDGAAIRRRRMCPECGGRFTTFERVQLRELIILKRSGRRSPFDRDKLVRSITLAMQK 76

Query: 53 AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
                           + ++ +    V +L 
Sbjct: 77 ------------RPVDPERVERMINGIVRQLE 96


>gi|56417484|gb|AAV90683.1| putative salivary secreted protein 62k-3 [Aedes albopictus]
          Length = 575

 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 53/389 (13%), Positives = 103/389 (26%), Gaps = 43/389 (11%)

Query: 106 LMQSGH------HKITREYVLYREERSDVRAAQSHSKSDA--PIAPKLKIMMDDGTLISF 157
           LM  G+      HK+ +E   Y E+ S +     H K +A      K+K +  D   +  
Sbjct: 83  LMNKGYVKVEEFHKMAKE---YEEQLSKLNGELEHFKVEARSGADQKIKELKKDIQALEQ 139

Query: 158 NSKRLEMIVEEACSGLQDVSSKI-----------VLSETYKNMYDGLSESDLETALIFS- 205
           N  +L   ++     L  VS ++              E  K++        ++  L  + 
Sbjct: 140 NVTKLHDRLKGITDELGKVSMELCSTYLESNQLDSAKEKVKDLPSKYVIELVDQFLSKNE 199

Query: 206 -----SRTLIEKEPNY---AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257
                   L    P+     +V        L +  L        +A   ++   +     
Sbjct: 200 NNWLPVVDLSTAVPDLDDRGQVYKNIYEFLLAKSRLEGEESLLLEAEILKLNATFHPGSK 259

Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-- 315
              +   +  +L   +  F    L    +         +  +   DR FL       E  
Sbjct: 260 ITDDRKRELNVLLTKLSQFSEKTLEQWTQELNQSNISAVVFKNAIDRMFLTQIEKFGEYV 319

Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375
             +  +  V   L L    K    +  YN L       +   +                 
Sbjct: 320 TGRHDYYGVRNFLKLLGVSKNYHKIAAYNSLVEKKIGHALAVVMIDMLSIDIAEIKHDPH 379

Query: 376 VPDDLYGIFGALQEN----------AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425
           VPD +  ++ +   +           + +      G +                    V+
Sbjct: 380 VPDRIERMYNSTINSLPDSLKGIIPCIKSVKIRNEGTNRCIYAINQNIQVQNPNFKNIVL 439

Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLET 454
              K    T  A         +   Y++ 
Sbjct: 440 GQYKRVTSTMSACTSFRLELSSNKPYIKI 468


>gi|222099869|ref|YP_002534437.1| Transcriptional repressor nrdR [Thermotoga neapolitana DSM 4359]
 gi|254768036|sp|B9K7Y8|NRDR_THENN RecName: Full=Transcriptional repressor NrdR
 gi|221572259|gb|ACM23071.1| Transcriptional repressor nrdR [Thermotoga neapolitana DSM 4359]
          Length = 156

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 12/66 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK++G    FD +KI   ++KA               + +  +  E+ V R+    +  
Sbjct: 51  VIKKDGRREKFDRNKIKNGMIKA------------CEKRPVTYDQIEEAVNRICLKLREE 98

Query: 91  LIVHIE 96
            +  +E
Sbjct: 99  GLFEVE 104


>gi|304439984|ref|ZP_07399877.1| transcriptional regulator NrdR [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371476|gb|EFM25089.1| transcriptional regulator NrdR [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 150

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+KR+G   +FDP KI   I+K   + E +  +   ++ +I+  +       + +  +S 
Sbjct: 51  VVKRDGNRQTFDPEKIRIGIIK---SCEKRPVNIE-KIDEIVNEVERNIRNTMKREVQSD 106

Query: 91  LIVHI 95
            I  I
Sbjct: 107 EIGEI 111


>gi|169823779|ref|YP_001691390.1| hypothetical protein FMG_0082 [Finegoldia magna ATCC 29328]
 gi|167830584|dbj|BAG07500.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 127

 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K+ G V SFD  KI       F ++     S   ++     N+  + V + ++  K  
Sbjct: 45  VLKKLGSVESFDKEKI-------FHSIAQTSDSSGAKMNASDVNIIVEDVLKKMKSIKRN 97

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREY 118
           +    E I+  VE +L + G+ K+   Y
Sbjct: 98  VYPTTE-IRGYVEEALKEEGYGKVLEAY 124


>gi|171686578|ref|XP_001908230.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943250|emb|CAP68903.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1275

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 24/232 (10%)

Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLI---SFNSKRLEMIVEEACSGLQDVSSK 179
           E+++ +R+A         +         DG       +    L+     +     +V + 
Sbjct: 543 EDQAVIRSAIRKHLPPQLLNNIGCFYSQDGRHQLATEYFQAALDSCARISSLNDTEVDTD 602

Query: 180 IVLSETYKNM-----YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234
            +L+    N+     Y+G    D++ A I +   L+ +  NY    AR    KLR+    
Sbjct: 603 ALLTTISFNLGRSYEYEG----DVDRA-IETYERLLSRHSNYTDARARLAYIKLRKNPNK 657

Query: 235 TVYKKPQKATHH-----EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289
                  K         E++ LY  +  +   +   A +  +         L N  K++R
Sbjct: 658 DGPDAVAKLYQDNPSDLEVRALYGWFLGKLSAKKRPANINEDPEHRHYKHTLQNYDKHDR 717

Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341
            +A   +G  +L     +       E  Q    R +M     E   +   +E
Sbjct: 718 -YALVGMGNLLLGSAREMRR-----ESEQDRQKRSSMYSRAVEFFDKALQLE 763


>gi|13542003|ref|NP_111691.1| TPR repeat-containing protein [Thermoplasma volcanium GSS1]
          Length = 850

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 85/282 (30%), Gaps = 52/282 (18%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV-TRLLQHNKSA 90
           +K NG V  F   KI R++ K+    +             I  +T     ++L      A
Sbjct: 295 VKFNGQVVGFYSDKIRRSVEKSMKTSD-------------IAYMTSLIESSQLFMRMPPA 341

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             +HI          LM++      R+ +            QS       +   ++ +  
Sbjct: 342 QRMHI----------LMKANKLDEIRDII--------KEKGQSLVDGYNSVDEVIEDLEQ 383

Query: 151 DGTL--ISFNSKR-------LEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLE 199
            G +     + K+       L+   ++A S   D+     L       ++Y  + + +  
Sbjct: 384 LGNVFSEDSDVKKVLCHAYYLKGRFDKAISCYMDIKPDHDLDSMIDLSSIYSNMGKFEEA 443

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKL----RREVLTTVYKKPQKATHHEMQCLYPEY 255
             ++  ++     +     ++ R           ++ +  +     K     M  +    
Sbjct: 444 EKILEDAKNNFTDDYPQTIISYRIAALYYRMGRYKDTIDMLTPLLGKIDAENMSGVKAGI 503

Query: 256 FCRYIEEGVKARLLHESMMDFDL-----VYLANDLKYERDFA 292
                   + +    +++  ++        L+N  +  R+  
Sbjct: 504 LNILGNIDMTSYRYGDALKKYNEALEINRKLSNYAEISRNLN 545


>gi|260060892|ref|YP_003193972.1| hypothetical protein RB2501_04825 [Robiginitalea biformata
           HTCC2501]
 gi|88785024|gb|EAR16193.1| hypothetical protein RB2501_04825 [Robiginitalea biformata
           HTCC2501]
          Length = 283

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202
             +++    G + +F+  +L   +  +      V  + +  E   N+ DG++   +    
Sbjct: 2   GVIQVKKYSGEMEAFDMNKLVNSLRRSQVDESLV--QQIAHEVEGNIEDGMTTKKIYQMA 59


>gi|323704722|ref|ZP_08116300.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536184|gb|EGB25957.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1036

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193
           +K   ++  L   N +RL+ ++++ C  L  + + I+L +  K MYD +
Sbjct: 780 MKYYSENKDLYDVNEERLKDVIDKICENLDGIKNDIILEKFKKEMYDTI 828


>gi|114704833|ref|ZP_01437741.1| hypothetical protein FP2506_07851 [Fulvimarina pelagi HTCC2506]
 gi|114539618|gb|EAU42738.1| hypothetical protein FP2506_07851 [Fulvimarina pelagi HTCC2506]
          Length = 112

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 16/69 (23%)

Query: 26 IKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81
          ++ + V+K++G    FD  K    +  A+ K    VE           D ++ L    V 
Sbjct: 1  MRELYVLKKSGRRVPFDRDKLARSVEVALRK--RPVE----------HDRVERLVSGIVR 48

Query: 82 RLLQHNKSA 90
          RL Q     
Sbjct: 49 RLEQSGDQD 57


>gi|14325435|dbj|BAB60339.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 852

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 85/282 (30%), Gaps = 52/282 (18%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV-TRLLQHNKSA 90
           +K NG V  F   KI R++ K+    +             I  +T     ++L      A
Sbjct: 297 VKFNGQVVGFYSDKIRRSVEKSMKTSD-------------IAYMTSLIESSQLFMRMPPA 343

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150
             +HI          LM++      R+ +            QS       +   ++ +  
Sbjct: 344 QRMHI----------LMKANKLDEIRDII--------KEKGQSLVDGYNSVDEVIEDLEQ 385

Query: 151 DGTL--ISFNSKR-------LEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLE 199
            G +     + K+       L+   ++A S   D+     L       ++Y  + + +  
Sbjct: 386 LGNVFSEDSDVKKVLCHAYYLKGRFDKAISCYMDIKPDHDLDSMIDLSSIYSNMGKFEEA 445

Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKL----RREVLTTVYKKPQKATHHEMQCLYPEY 255
             ++  ++     +     ++ R           ++ +  +     K     M  +    
Sbjct: 446 EKILEDAKNNFTDDYPQTIISYRIAALYYRMGRYKDTIDMLTPLLGKIDAENMSGVKAGI 505

Query: 256 FCRYIEEGVKARLLHESMMDFDL-----VYLANDLKYERDFA 292
                   + +    +++  ++        L+N  +  R+  
Sbjct: 506 LNILGNIDMTSYRYGDALKKYNEALEINRKLSNYAEISRNLN 547


>gi|218440422|ref|YP_002378751.1| NrdR family transcripitonal regulator [Cyanothece sp. PCC 7424]
 gi|226732974|sp|B7KFG7|NRDR_CYAP7 RecName: Full=Transcriptional repressor NrdR
 gi|218173150|gb|ACK71883.1| ATP-cone domain protein [Cyanothece sp. PCC 7424]
          Length = 180

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ------DVSSKIVLSETYKNMYDGLSESDL 198
           + ++  D +  SF+  +L   +  AC   +      +   + + +   ++    ++  ++
Sbjct: 49  ISVLKKDKSKESFDRSKLLRGIVRACEKTEVSAQQIENVVEEIEARLQQSPRREITSQEI 108

Query: 199 ETALIFSSRTLIEKEPNYAKVTA 221
              ++   R L   E  Y +  +
Sbjct: 109 GQLVLQYLREL--NEVAYIRFAS 129


>gi|154249835|ref|YP_001410660.1| transcriptional regulator NrdR [Fervidobacterium nodosum Rt17-B1]
 gi|189030547|sp|A7HM70|NRDR_FERNB RecName: Full=Transcriptional repressor NrdR
 gi|154153771|gb|ABS61003.1| ATP-cone domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 153

 Score = 39.1 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75
          VIK++G    FD  KI   ++KAF             V +I+  L
Sbjct: 51 VIKKDGRREKFDRKKILNGLLKAFEKRPITVDDMERIVDNIVSQL 95


>gi|85858029|ref|YP_460231.1| transcriptional regulator NrdR [Syntrophus aciditrophicus SB]
 gi|119372238|sp|Q2LQM8|NRDR_SYNAS RecName: Full=Transcriptional repressor NrdR
 gi|85721120|gb|ABC76063.1| regulatory protein [Syntrophus aciditrophicus SB]
          Length = 159

 Score = 39.1 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53
          V+K++G    FD +KI   I KA
Sbjct: 51 VVKKDGRREPFDRNKIRMGIRKA 73


>gi|113461194|ref|YP_719263.1| transcriptional regulator NrdR [Haemophilus somnus 129PT]
 gi|170717791|ref|YP_001784855.1| NrdR family transcripitonal regulator [Haemophilus somnus 2336]
 gi|119372197|sp|Q0I495|NRDR_HAES1 RecName: Full=Transcriptional repressor NrdR
 gi|189030551|sp|B0UUR2|NRDR_HAES2 RecName: Full=Transcriptional repressor NrdR
 gi|112823237|gb|ABI25326.1| conserved hypothetical protein [Haemophilus somnus 129PT]
 gi|168825920|gb|ACA31291.1| ATP-cone domain protein [Haemophilus somnus 2336]
          Length = 149

 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 121 YREERSDVRAAQSHSKSDAPIAPKL--KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSS 178
           Y+  R           +    A  +  KI+ +DG+   F+  +L   ++ A    + VSS
Sbjct: 23  YQVRRRRECGYCHERFTTFESAEVIVPKIIKNDGSREPFDEDKLRRGIQHALEK-RPVSS 81

Query: 179 KIVLSETYKNMYDGLSESDLE 199
             V     + +Y   +  + +
Sbjct: 82  DDVEKAISRIIYQLRATGERD 102


>gi|297191629|ref|ZP_06909027.1| transcriptional repressor nrdR [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719370|gb|EDY63278.1| transcriptional repressor nrdR [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 170

 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 6   DVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64
                     P  A  F       + VIKR+G    F  +K+   + KA           
Sbjct: 22  GTAIRRRRQCPDCARRFTTVETASLMVIKRSGVTEPFSRTKVISGVRKA--------CQG 73

Query: 65  SIRVQDIIKNLTEQTVTRLLQHNKSALIVH 94
               +D +  L ++    +     + L  H
Sbjct: 74  RPVTEDALAQLGQRVEEAVRATGSAELTTH 103


>gi|46205558|ref|ZP_00048379.2| COG1328: Oxygen-sensitive ribonucleoside-triphosphate reductase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 70

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHK-ITREYVLYREERSDVRAAQSHSKSD 138
            +    V I +IQ  VE       H+K + R Y+ YR +R   R  +     +
Sbjct: 1   MQGRAQVDISEIQTAVENQRRSRAHYKQLARAYIEYRHDRDSQREKRGRLNQE 53


>gi|145593999|ref|YP_001158296.1| transcriptional regulator NrdR [Salinispora tropica CNB-440]
 gi|189029309|sp|A4X4W8|NRDR_SALTO RecName: Full=Transcriptional repressor NrdR
 gi|145303336|gb|ABP53918.1| ATP-cone domain protein [Salinispora tropica CNB-440]
          Length = 154

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 12  EDAFPSLAYPFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
             + P     F    +  + V+KR+G    F  +KI   + KA                D
Sbjct: 28  RRSCPECGKRFTTVEEAILAVVKRSGVTEPFSRTKIIGGVRKA--------CQGRPVDDD 79

Query: 71  IIKNLTEQTVTRLLQHNKSALIVH 94
            +  L ++    +     + L  H
Sbjct: 80  SVALLAQKVEETVRAKGAAELPSH 103


>gi|221052606|ref|XP_002261026.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|194247030|emb|CAQ38214.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 839

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 65/209 (31%), Gaps = 22/209 (10%)

Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186
             R        +      L I   +  +     +++  +++  C     V+   +     
Sbjct: 175 QEREEIRQQVEEEKAKFALVIKKKNEQINK--MEKIYKVMKRKCYPKYKVNFNKIPLSEK 232

Query: 187 KNMYDGLSESDLETALIFSSR---TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243
            + YDG  +  +        R    +I+K   Y  +       +  ++++    K  ++ 
Sbjct: 233 PDHYDGYLQRQINEQCKLFQRHILDVIQKLQEYLLICKNTFASQ-GKQLIDFCEKLEREK 291

Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303
              ++            ++ + +     ++    L  L   L   +D A+    L+ L  
Sbjct: 292 RDDQLDYSRVADLKMISQKEINSMEEVINL----LEDLGTWLHGSQDKAYVQALLRNLSA 347

Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKE 332
                         +  F+ V++ L ++E
Sbjct: 348 ------------TVKKMFLNVSIYLCVEE 364


>gi|229823046|ref|ZP_04449115.1| hypothetical protein GCWU000282_00341 [Catonella morbi ATCC 51271]
 gi|229787485|gb|EEP23599.1| hypothetical protein GCWU000282_00341 [Catonella morbi ATCC 51271]
          Length = 158

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 18/118 (15%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIKR+G    F   K+ R I++         A +     + ++ L +Q   ++     + 
Sbjct: 51  VIKRDGTREEFSQEKLLRGIVR--------SAEKRPITMEQMQALAQQVENKI--REITD 100

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREYV----LYREERSDVRAAQSHSKSDAPIAPK 144
             +  E I + V   LM+     +   Y+    +YR+  S     +        ++ K
Sbjct: 101 QEIESEQIGEFVIPLLMELDE--VA--YIRFASVYRQFHSRESFLKELQALQDRLSEK 154


>gi|88859175|ref|ZP_01133816.1| putative predicted transcriptional regulator [Pseudoalteromonas
           tunicata D2]
 gi|88819401|gb|EAR29215.1| putative predicted transcriptional regulator [Pseudoalteromonas
           tunicata D2]
          Length = 149

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 23/110 (20%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             F      + +VIK++G    F+  K+   + +A      K    + ++++++  +  Q
Sbjct: 39  TTFEGAELVMPRVIKQDGSREPFNEDKLMNGLHRAL----EKRPVSTEQIEEVVHRIMSQ 94

Query: 79  TVTRLLQHNKSALIVHIEDIQDQVECSLMQS--GHHKITREYV----LYR 122
             +   +   S    HI      V   +M++     K+   YV    +YR
Sbjct: 95  LRSTGEREIPS----HI------VGECIMEALKKLDKVA--YVRFASVYR 132


>gi|213025541|ref|ZP_03339988.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 45

 Score = 39.1 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771
           +R  W +L+  V   G+ N N  A+ PT +
Sbjct: 8   TREMWLKLRDDVMRYGIYNQNLQAVPPTGS 37


>gi|89893067|ref|YP_516554.1| transcriptional regulator NrdR [Desulfitobacterium hafniense Y51]
 gi|219666335|ref|YP_002456770.1| NrdR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|119372191|sp|Q251D2|NRDR_DESHY RecName: Full=Transcriptional repressor NrdR
 gi|254768007|sp|B8G0R5|NRDR_DESHD RecName: Full=Transcriptional repressor NrdR
 gi|89332515|dbj|BAE82110.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536595|gb|ACL18334.1| ATP-cone domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 154

 Score = 39.1 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS---ETYKNMYDGLSESDLETALI 203
           ++  DG    F+  +L+  +  AC   + VS + + +   E  K + +G SE ++++  I
Sbjct: 51  VVKKDGRREEFSRGKLKAGILRACEK-RPVSIEQIETLVYEIEKGLRNG-SEREVQSKAI 108

Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRRE 231
             +        +     A      + RE
Sbjct: 109 GEAVMNALVHLD---EVAYIRFASVYRE 133


>gi|146297062|ref|YP_001180833.1| transcriptional regulator NrdR [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|189030524|sp|A4XL57|NRDR_CALS8 RecName: Full=Transcriptional repressor NrdR
 gi|145410638|gb|ABP67642.1| ATP-cone domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 153

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 123 EERSDVRA------AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-- 174
           E R+  R        +  +  +      + ++  D     F+  ++   + +AC      
Sbjct: 21  EGRTIKRRRECLKCQKRFTTFEKVERQPILVIKKDNRREEFDRSKILNGIIKACQKRPVS 80

Query: 175 ----DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
               +     + +E Y +M D +S  ++   ++   + L   E +Y +  +
Sbjct: 81  IEQMNKIVDEIENEIYNSMRDEISSREIGEMVMEKLKKL--DEISYVRFAS 129


>gi|312195034|ref|YP_004015095.1| ATP-cone domain protein [Frankia sp. EuI1c]
 gi|311226370|gb|ADP79225.1| ATP-cone domain protein [Frankia sp. EuI1c]
          Length = 174

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 5   KDVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +        A PS    F   +   ++V KR+G    F  +K+     KA      +G  
Sbjct: 21  EGAAIRRRRACPSCGRRFTTMEEASLRVRKRSGAAEPFSRAKVVAGARKA-----CQGRP 75

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDI 98
            S     I+    E TV      +  A  V  ED+
Sbjct: 76  VSAEDLAILAQRVEDTV-----RSSGAAEVAAEDV 105


>gi|254713881|ref|ZP_05175692.1| transcriptional regulator NrdR [Brucella ceti M644/93/1]
 gi|254717062|ref|ZP_05178873.1| transcriptional regulator NrdR [Brucella ceti M13/05/1]
 gi|261218872|ref|ZP_05933153.1| transcriptional repressor nrdR [Brucella ceti M13/05/1]
 gi|261321629|ref|ZP_05960826.1| transcriptional repressor nrdR [Brucella ceti M644/93/1]
 gi|260923961|gb|EEX90529.1| transcriptional repressor nrdR [Brucella ceti M13/05/1]
 gi|261294319|gb|EEX97815.1| transcriptional repressor nrdR [Brucella ceti M644/93/1]
          Length = 158

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 45  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVN 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 105 SDEIGRLAMDALKGIDDI 122


>gi|225850612|ref|YP_002730846.1| transcriptional regulator NrdR [Persephonella marina EX-H1]
 gi|254768023|sp|C0QQA0|NRDR_PERMH RecName: Full=Transcriptional repressor NrdR
 gi|225646505|gb|ACO04691.1| transcriptional regulator NrdR [Persephonella marina EX-H1]
          Length = 152

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 14/78 (17%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V K+NG    F+  KI R I  A             + + + +    +    + ++    
Sbjct: 51  VKKKNGTTEPFNKDKIIRGIRLA------------SKNRPVSEKQMVEIADEIEKYLLEE 98

Query: 91  LIVHIE--DIQDQVECSL 106
             + +E  +I D V+  L
Sbjct: 99  GKLVVESTEIGDLVQEKL 116


>gi|225627264|ref|ZP_03785301.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|254707011|ref|ZP_05168839.1| transcriptional regulator NrdR [Brucella pinnipedialis M163/99/10]
 gi|254709880|ref|ZP_05171691.1| transcriptional regulator NrdR [Brucella pinnipedialis B2/94]
 gi|256031373|ref|ZP_05444987.1| transcriptional regulator NrdR [Brucella pinnipedialis M292/94/1]
 gi|256159494|ref|ZP_05457262.1| transcriptional regulator NrdR [Brucella ceti M490/95/1]
 gi|256254780|ref|ZP_05460316.1| transcriptional regulator NrdR [Brucella ceti B1/94]
 gi|260168506|ref|ZP_05755317.1| transcriptional regulator NrdR [Brucella sp. F5/99]
 gi|261221960|ref|ZP_05936241.1| transcriptional repressor nrdR [Brucella ceti B1/94]
 gi|261314478|ref|ZP_05953675.1| transcriptional repressor nrdR [Brucella pinnipedialis M163/99/10]
 gi|261317422|ref|ZP_05956619.1| transcriptional repressor nrdR [Brucella pinnipedialis B2/94]
 gi|261757976|ref|ZP_06001685.1| transcriptional repressor nrdR [Brucella sp. F5/99]
 gi|265988459|ref|ZP_06101016.1| transcriptional repressor nrdR [Brucella pinnipedialis M292/94/1]
 gi|265997923|ref|ZP_06110480.1| transcriptional repressor nrdR [Brucella ceti M490/95/1]
 gi|225617269|gb|EEH14314.1| conserved hypothetical protein [Brucella ceti str. Cudo]
 gi|260920544|gb|EEX87197.1| transcriptional repressor nrdR [Brucella ceti B1/94]
 gi|261296645|gb|EEY00142.1| transcriptional repressor nrdR [Brucella pinnipedialis B2/94]
 gi|261303504|gb|EEY07001.1| transcriptional repressor nrdR [Brucella pinnipedialis M163/99/10]
 gi|261737960|gb|EEY25956.1| transcriptional repressor nrdR [Brucella sp. F5/99]
 gi|262552391|gb|EEZ08381.1| transcriptional repressor nrdR [Brucella ceti M490/95/1]
 gi|264660656|gb|EEZ30917.1| transcriptional repressor nrdR [Brucella pinnipedialis M292/94/1]
          Length = 158

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 25  KIKGVQVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80
           +++ + V+K++G    FD  K    I  A+ K  +  E    + S  V+ +      +  
Sbjct: 45  QLRDLMVVKKSGRRVPFDRDKLTRSIEVALRKRDVDSERVERAISGIVRQLESAGEAEVN 104

Query: 81  TRLLQHNKSALIVHIEDI 98
           +  +       +  I+DI
Sbjct: 105 SDEIGRLAMDALKGIDDI 122


>gi|2760639|dbj|BAA24242.1| P12 [Leucania separata nuclear polyhedrosis virus]
          Length = 102

 Score = 39.1 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174
           + ++  DG L   +S +L   +   C  L 
Sbjct: 1   MYVVKRDGRLEQVSSSKLYQRIHRLCHDLN 30


>gi|312871303|ref|ZP_07731401.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LEAF 3008A-a]
 gi|312872753|ref|ZP_07732818.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LEAF 2062A-h1]
 gi|315654057|ref|ZP_07906973.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus iners ATCC 55195]
 gi|325912204|ref|ZP_08174601.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners UPII 143-D]
 gi|311091795|gb|EFQ50174.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311093317|gb|EFQ51663.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LEAF 3008A-a]
 gi|315488753|gb|EFU78399.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus iners ATCC 55195]
 gi|325475863|gb|EGC79032.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners UPII 143-D]
          Length = 729

 Score = 38.7 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS     +
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQL 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTVEIASAFVRVLREM 81


>gi|259500863|ref|ZP_05743765.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners DSM 13335]
 gi|302190684|ref|ZP_07266938.1| anaerobic ribonucleoside triphosphate reductase [Lactobacillus
           iners AB-1]
 gi|259167557|gb|EEW52052.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners DSM 13335]
          Length = 729

 Score = 38.7 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS     +
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQL 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTVEIASAFVRVLREM 81


>gi|15644455|ref|NP_229507.1| transcriptional regulator NrdR [Thermotoga maritima MSB8]
 gi|18203591|sp|Q9X233|NRDR_THEMA RecName: Full=Transcriptional repressor NrdR
 gi|4982284|gb|AAD36774.1|AE001810_13 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 156

 Score = 38.7 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K++G    FD  KI   ++KA               + +     E+ V R+    +  
Sbjct: 51  VVKKDGRREKFDREKIKNGMIKA------------CEKRPVTYEQIEEAVNRICLKLREE 98

Query: 91  LIVHIE 96
               +E
Sbjct: 99  GSFEVE 104


>gi|18311662|ref|NP_558329.1| hypothetical protein PAE0026 [Pyrobaculum aerophilum str. IM2]
 gi|18159059|gb|AAL62511.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 91

 Score = 38.7 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA 53
          V+V+KR+G V  F P KI  +++KA
Sbjct: 2  VKVVKRDGRVEEFIPEKIVVSVLKA 26


>gi|312874113|ref|ZP_07734148.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Lactobacillus iners LEAF 2052A-d]
 gi|311090453|gb|EFQ48862.1| putative anaerobic ribonucleoside-triphosphate reductase
           [Lactobacillus iners LEAF 2052A-d]
          Length = 497

 Score = 38.7 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS      
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQF 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTVEIASAFVRVLREM 81


>gi|330466450|ref|YP_004404193.1| transcriptional regulator NrdR [Verrucosispora maris AB-18-032]
 gi|328809421|gb|AEB43593.1| transcriptional regulator NrdR [Verrucosispora maris AB-18-032]
          Length = 166

 Score = 38.7 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 12  EDAFPSLAYPFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70
             + P     F    +  + V+KR+G    F  +KI   + KA               +D
Sbjct: 28  RRSCPECGKRFTTVEEAVLAVVKRSGVTEPFSRTKIIGGVRKA--------CQGRPVDED 79

Query: 71  IIKNLTEQTVTRLLQHNKSALIVH 94
            I  L ++    +     + +  H
Sbjct: 80  SIALLAQRVEETIRAKGAAEIPSH 103


>gi|148270137|ref|YP_001244597.1| transcriptional regulator NrdR [Thermotoga petrophila RKU-1]
 gi|281412521|ref|YP_003346600.1| ATP-cone domain protein [Thermotoga naphthophila RKU-10]
 gi|189030872|sp|A5ILE8|NRDR_THEP1 RecName: Full=Transcriptional repressor NrdR
 gi|147735681|gb|ABQ47021.1| ATP-cone domain protein [Thermotoga petrophila RKU-1]
 gi|281373624|gb|ADA67186.1| ATP-cone domain protein [Thermotoga naphthophila RKU-10]
          Length = 156

 Score = 38.7 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K++G    FD  KI   ++KA               + +     E+ V R+    +  
Sbjct: 51  VVKKDGRREKFDREKIKNGMIKA------------CEKRPVTYEQIEEAVNRICLKLREE 98

Query: 91  LIVHIE 96
               +E
Sbjct: 99  GSFEVE 104


>gi|148379965|ref|YP_001254506.1| hypothetical protein CBO2003 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931601|ref|YP_001384264.1| hypothetical protein CLB_1944 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934534|ref|YP_001387803.1| hypothetical protein CLC_1950 [Clostridium botulinum A str. Hall]
 gi|153940075|ref|YP_001391328.1| hypothetical protein CLI_2070 [Clostridium botulinum F str.
           Langeland]
 gi|168179711|ref|ZP_02614375.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|168185008|ref|ZP_02619672.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|170756092|ref|YP_001781567.1| hypothetical protein CLD_2621 [Clostridium botulinum B1 str. Okra]
 gi|226949301|ref|YP_002804392.1| hypothetical protein CLM_2220 [Clostridium botulinum A2 str. Kyoto]
 gi|237795434|ref|YP_002862986.1| hypothetical protein CLJ_B2207 [Clostridium botulinum Ba4 str. 657]
 gi|148289449|emb|CAL83546.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927645|gb|ABS33145.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930448|gb|ABS35947.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|152935971|gb|ABS41469.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|169121304|gb|ACA45140.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|182669468|gb|EDT81444.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182671920|gb|EDT83881.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226843498|gb|ACO86164.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|229260996|gb|ACQ52029.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
 gi|295319357|gb|ADF99734.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
 gi|322806270|emb|CBZ03838.1| no significant homology [Clostridium botulinum H04402 065]
          Length = 92

 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88
           +++IK++G + +FD SK+  +I  +    +G   + S  +  I+K++ +  V  +     
Sbjct: 1   MEIIKKSGKLEAFDESKLKTSIANSARDTKGVHLTES-DLNSIVKDI-KNIVKNI--RKD 56

Query: 89  SALIVHIEDIQDQVECSLMQSGHHKITREYV 119
           +      E I   +   L ++  H++ +EY+
Sbjct: 57  NEKTSSYELI-GIINDVLKKNKFHEVLKEYI 86


>gi|54401352|gb|AAV34446.1| predicted transcriptional regulator [uncultured proteobacterium
           RedeBAC7D11]
          Length = 150

 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 14/80 (17%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           ++IK++     FD +KI   I            +RS+  + +     +  +  + +  + 
Sbjct: 50  KIIKQDKSRVPFDETKIREGI------------ARSLEKRPVSDAQFQTLIETIKKEIRD 97

Query: 90  ALIVHIEDIQDQVECSLMQS 109
                IE  Q  V  ++M+ 
Sbjct: 98  FGEREIESKQ--VGETVMRH 115


>gi|225848758|ref|YP_002728922.1| NrdR family transcriptional regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643954|gb|ACN99004.1| transcriptional regulator NrdR [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 157

 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 6/71 (8%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG--LQDVSSKIVLSETYKNMYDG--- 192
           +      + ++  D +   F+ +++   ++ A  G  + +   + +  E  + + D    
Sbjct: 42  ERIEEELITVIKKDNSTQPFDKEKIVRGIKLASKGRPITETQIRQIADEIERYLIDEGKL 101

Query: 193 -LSESDLETAL 202
            ++ +++   +
Sbjct: 102 KVTSAEIGDMV 112


>gi|225568232|ref|ZP_03777257.1| hypothetical protein CLOHYLEM_04306 [Clostridium hylemonae DSM
           15053]
 gi|225162951|gb|EEG75570.1| hypothetical protein CLOHYLEM_04306 [Clostridium hylemonae DSM
           15053]
          Length = 709

 Score = 38.7 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 28  GVQVIKRNGGVTSFDPSKISRAIMK-AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            V+V+K++G    F+  K+  A+ K A+ A+          +   ++   E+   R +  
Sbjct: 4   EVKVVKKDGTKEEFNVQKVVVAVNKSAYRALVKFTEEELGFICSFVE---EKVDARNVAE 60

Query: 87  NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122
                   I ++ + VE +L +     + + Y  YR
Sbjct: 61  IP------IAEMHNVVEGALEKVNP-VVAKSYRDYR 89


>gi|37596205|gb|AAQ94850.1| NrdE [Yersinia pestis]
 gi|37596208|gb|AAQ94852.1| NrdE [Yersinia pestis]
 gi|37596211|gb|AAQ94854.1| NrdE [Yersinia pestis]
 gi|37596213|gb|AAQ94855.1| NrdE [Yersinia pestis]
 gi|37596216|gb|AAQ94857.1| NrdE [Yersinia pestis]
 gi|37596219|gb|AAQ94859.1| NrdE [Yersinia pestis]
 gi|37596222|gb|AAQ94861.1| NrdE [Yersinia pestis]
 gi|37596225|gb|AAQ94863.1| NrdE [Yersinia pestis]
 gi|37596228|gb|AAQ94865.1| NrdE [Yersinia pestis]
          Length = 36

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 890 RQAWLMGLKTTYYLR 904
             AW  G+KT YY+R
Sbjct: 3   IYAWKKGIKTIYYIR 17


>gi|225021234|ref|ZP_03710426.1| hypothetical protein CORMATOL_01246 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305680708|ref|ZP_07403515.1| transcriptional regulator NrdR [Corynebacterium matruchotii ATCC
          14266]
 gi|224945967|gb|EEG27176.1| hypothetical protein CORMATOL_01246 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305658913|gb|EFM48413.1| transcriptional regulator NrdR [Corynebacterium matruchotii ATCC
          14266]
          Length = 151

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
            + VIKRNG    F   K+   + +A               +D +K L ++    +  H
Sbjct: 44 AQLLVIKRNGLTEPFSREKVITGVRRA--------CQGRNVSEDALKRLAQEVEEVVRSH 95

Query: 87 NKSA 90
            S 
Sbjct: 96 GSSQ 99


>gi|29654710|ref|NP_820402.1| transcriptional regulator NrdR [Coxiella burnetii RSA 493]
 gi|153208977|ref|ZP_01947183.1| transcriptional regulator NrdR [Coxiella burnetii 'MSU Goat Q177']
 gi|154706049|ref|YP_001423987.1| transcriptional regulator NrdR [Coxiella burnetii Dugway 5J108-111]
 gi|161830065|ref|YP_001597257.1| transcriptional regulator NrdR [Coxiella burnetii RSA 331]
 gi|165924145|ref|ZP_02219977.1| transcriptional regulator NrdR [Coxiella burnetii RSA 334]
 gi|212212218|ref|YP_002303154.1| transcriptional regulator NrdR [Coxiella burnetii CbuG_Q212]
 gi|212219015|ref|YP_002305802.1| transcriptional regulator NrdR [Coxiella burnetii CbuK_Q154]
 gi|38258727|sp|Q83BT4|NRDR_COXBU RecName: Full=Transcriptional repressor NrdR
 gi|189030536|sp|A9KBN5|NRDR_COXBN RecName: Full=Transcriptional repressor NrdR
 gi|189030537|sp|A9N8T7|NRDR_COXBR RecName: Full=Transcriptional repressor NrdR
 gi|226732971|sp|B6J8Q8|NRDR_COXB1 RecName: Full=Transcriptional repressor NrdR
 gi|226732972|sp|B6IZ81|NRDR_COXB2 RecName: Full=Transcriptional repressor NrdR
 gi|29541978|gb|AAO90916.1| putative regulatory protein [Coxiella burnetii RSA 493]
 gi|120575577|gb|EAX32201.1| transcriptional regulator NrdR [Coxiella burnetii 'MSU Goat Q177']
 gi|154355335|gb|ABS76797.1| putative regulatory protein [Coxiella burnetii Dugway 5J108-111]
 gi|161761932|gb|ABX77574.1| transcriptional regulator NrdR [Coxiella burnetii RSA 331]
 gi|165916404|gb|EDR35008.1| transcriptional regulator NrdR [Coxiella burnetii RSA 334]
 gi|212010628|gb|ACJ18009.1| putative regulatory protein [Coxiella burnetii CbuG_Q212]
 gi|212013277|gb|ACJ20657.1| putative regulatory protein [Coxiella burnetii CbuK_Q154]
          Length = 157

 Score = 38.7 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 30  QVIKRNGGVTSFDPSKISRAIMKAF----MAVEGKGASRSIRVQDIIKNLTEQTVTR 82
           ++IKR+G  ++FD  K+   ++KA     ++ E    +    +  +      +  ++
Sbjct: 50  RIIKRDGRRSAFDEEKLRAGLLKALEKRPISTEQIETAVQRIIHKLRARGECEVSSQ 106


>gi|223937248|ref|ZP_03629154.1| ATP-cone domain protein [bacterium Ellin514]
 gi|223894033|gb|EEF60488.1| ATP-cone domain protein [bacterium Ellin514]
          Length = 167

 Score = 38.7 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 27  KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86
           + + V+KR+G    F   K+   + KAF     K       ++ +++ +  +   +  + 
Sbjct: 62  EDLMVVKRDGRREEFSREKLLSGLKKAF----QKRPVSPEAIEMLLEKIVNEINEKYERE 117

Query: 87  NKS 89
              
Sbjct: 118 VPG 120


>gi|305664177|ref|YP_003860465.1| ATP-cone domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378746|gb|ADM28585.1| ATP-cone domain protein [Ignisphaera aggregans DSM 17230]
          Length = 96

 Score = 38.7 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87
          VIKR+G    F P KI  + +KA   V+       I    +++   ++   R L   
Sbjct: 5  VIKRDGSKEEFIPEKIVVSCLKAGAPVDVARKIAKIVEAKLLEQNVKEVSARELTRM 61


>gi|167525050|ref|XP_001746860.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774640|gb|EDQ88267.1| predicted protein [Monosiga brevicollis MX1]
          Length = 637

 Score = 38.7 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 7/54 (12%)

Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-------FTVVNSFLVNE 809
              + P  T + + G S  +   +   Y++                 N  L+ +
Sbjct: 438 VTTVKPAGTTSLVLGTSSGVHAWHSPYYLRRVRVNKSEAIYYYLQATNPGLLED 491


>gi|187779379|ref|ZP_02995852.1| hypothetical protein CLOSPO_02975 [Clostridium sporogenes ATCC
           15579]
 gi|187773004|gb|EDU36806.1| hypothetical protein CLOSPO_02975 [Clostridium sporogenes ATCC
           15579]
          Length = 92

 Score = 38.7 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 29  VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87
           +++IK++G +  FD  K+  +I  +    EG   + S      +  + +     +     
Sbjct: 1   MEIIKKSGKLEYFDERKLKTSIANSARDTEGVHLTESD-----LNAIVKDIKNIIKNIRK 55

Query: 88  KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125
            +      E I   +   L+++  HK+ +E+V ++++R
Sbjct: 56  DNEKTSSYELI-GIINDVLIKNKFHKVLKEFVAFKDKR 92


>gi|296532914|ref|ZP_06895576.1| transcriptional regulator NrdR [Roseomonas cervicalis ATCC 49957]
 gi|296266762|gb|EFH12725.1| transcriptional regulator NrdR [Roseomonas cervicalis ATCC 49957]
          Length = 155

 Score = 38.7 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 35/136 (25%)

Query: 2   HPSK-DVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK----ISRAIMK 52
            P+          + PS    F       ++ + V+K +     FD  K    I  A+ K
Sbjct: 17  RPADDGAAIRRRRSCPSCGARFTTFERVTLRELTVVKSDQRRVPFDRDKLARSIRIALRK 76

Query: 53  AFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED--IQDQVECSLMQSG 110
                           + + ++  E+ V  + +  ++     I    I + V  +L    
Sbjct: 77  ----------------RPVDEDRIERIVNGIQRRLEAEGESEITSRAIGEMVMETL--KE 118

Query: 111 HHKITREYV----LYR 122
             ++   YV    +YR
Sbjct: 119 LDQVA--YVRFASVYR 132


>gi|319948150|ref|ZP_08022312.1| transcriptional regulator NrdR [Dietzia cinnamea P4]
 gi|319438179|gb|EFV93137.1| transcriptional regulator NrdR [Dietzia cinnamea P4]
          Length = 151

 Score = 38.3 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 5   KDVNKGDEDAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
           +          P   + F   +   + V+KRNG   +F   K+ R + +A          
Sbjct: 21  EGQAIRRRRECPECGHRFTTLETPLLTVLKRNGVTEAFSRDKVVRGVRRA--------CQ 72

Query: 64  RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDI--------QDQVE 103
                +D ++ L +Q    +     S +  H  +I        QD  E
Sbjct: 73  GRSIDEDALRRLAQQVEDTVRARGASEVPAH--EIGLAILGPLQDLDE 118


>gi|256850827|ref|ZP_05556216.1| transcriptional regulator NrdR [Lactobacillus jensenii 27-2-CHN]
 gi|260661038|ref|ZP_05861952.1| transcriptional regulator NrdR [Lactobacillus jensenii 115-3-CHN]
 gi|282934504|ref|ZP_06339759.1| transcriptional regulator NrdR [Lactobacillus jensenii 208-1]
 gi|297205700|ref|ZP_06923095.1| transcriptional regulator NrdR [Lactobacillus jensenii JV-V16]
 gi|256615889|gb|EEU21077.1| transcriptional regulator NrdR [Lactobacillus jensenii 27-2-CHN]
 gi|260547975|gb|EEX23951.1| transcriptional regulator NrdR [Lactobacillus jensenii 115-3-CHN]
 gi|281301451|gb|EFA93740.1| transcriptional regulator NrdR [Lactobacillus jensenii 208-1]
 gi|297148826|gb|EFH29124.1| transcriptional regulator NrdR [Lactobacillus jensenii JV-V16]
          Length = 155

 Score = 38.3 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 123 EERSDVRAAQSHSKS------DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV 176
           E R+  R  +  +        +      L ++ +DGT   F+ +++   V  A       
Sbjct: 21  EGRTIRRRRECENCGYRFTTFERVEQTPLLVIKNDGTREPFDREKILRGVAAAAQKRPVT 80

Query: 177 S------SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221
           S         V +E  K     +S  ++   ++     +   +  Y +  +
Sbjct: 81  SEQLDKLVDHVENEIRKQGVSEISSKEIGELVMNELVNV--DDVAYIRFAS 129


>gi|269103256|ref|ZP_06155953.1| ribonucleotide reductase transcriptional regulator NrdR
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163154|gb|EEZ41650.1| ribonucleotide reductase transcriptional regulator NrdR
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 149

 Score = 38.3 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 27/112 (24%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSK----ISRAIMKAFMAVEGKGASRSIRVQDIIKN 74
             F      + +VIK NG    F+  K    I RA+ K            S    D I+ 
Sbjct: 39  TTFETAELVMPRVIKSNGNREPFNEDKLSGGIQRALEK---------RPVST---DDIER 86

Query: 75  LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYR 122
            T    ++L         V  E I + V  +L      K+   Y+    +YR
Sbjct: 87  ATNNIKSKL--RATGEREVTSEMIGNLVMEAL--KELDKVA--YIRFASVYR 132


>gi|284992285|ref|YP_003410839.1| ATPase domain-containing protein [Geodermatophilus obscurus DSM
          43160]
 gi|284065530|gb|ADB76468.1| ATP-cone domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 183

 Score = 38.3 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 5  KDVNKGDEDAFPSLAYPFPEKIKG-VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63
          +        + P+    F    +  + V+KR+G    F+ SK+   + +A          
Sbjct: 21 EGATTRRRRSCPACGRRFTTVEEAVLAVVKRSGVSEPFNRSKVVAGVRRA--------CQ 72

Query: 64 RSIRVQDIIKNLTEQTVTRL 83
               +D ++ L +Q    +
Sbjct: 73 GRPVDEDQLQKLAQQVEDAI 92


>gi|299143960|ref|ZP_07037040.1| transcriptional regulator NrdR [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518445|gb|EFI42184.1| transcriptional regulator NrdR [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 152

 Score = 38.3 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/116 (7%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ------DVSSKIVLSETYKNMYD 191
           +      + +   DG   SF+  ++   + ++C          + +   +  +   ++  
Sbjct: 42  EKIEETPIIVEKKDGNRQSFDRNKIVHGIIKSCEKRPVSIEKIEAAVDNIEKKIQNSLKK 101

Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247
            ++ +++   ++   + L   E  Y +  +   + +  ++V +   +     +  +
Sbjct: 102 EITTTEIGEMVMQELKEL--DEVAYVRFAS---VYRQFKDVNSFFDELQDIISKKK 152


>gi|195434519|ref|XP_002065250.1| GK15349 [Drosophila willistoni]
 gi|194161335|gb|EDW76236.1| GK15349 [Drosophila willistoni]
          Length = 566

 Score = 38.3 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 54/244 (22%), Gaps = 6/244 (2%)

Query: 316 MPQ---AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372
            PQ        VA        ++E          S     C             Q S   
Sbjct: 283 TPQAQAQLQQIVASQTGGTTPKREPGHHPVKKRNSQQMTKCQKCNGSGVVLVGQQHSHTH 342

Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432
                   +       EN          G  ++    L +H    +G+         +A 
Sbjct: 343 GGGPSGSKHSNVTVKTENPTKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAF 402

Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492
             AV +    +       Y         +F         +R  + +      + D    R
Sbjct: 403 AKAVYLKNHARIHTGEKPYKC--QTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFAR 460

Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551
                        E     D+ G  F   A+     +   GE     +I + A   +   
Sbjct: 461 HATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFAL 520

Query: 552 MLFE 555
               
Sbjct: 521 KRHR 524


>gi|163848954|ref|YP_001636998.1| transcriptional regulator NrdR [Chloroflexus aurantiacus J-10-fl]
 gi|222526907|ref|YP_002571378.1| transcriptional regulator NrdR [Chloroflexus sp. Y-400-fl]
 gi|189030526|sp|A9WKI1|NRDR_CHLAA RecName: Full=Transcriptional repressor NrdR
 gi|254768000|sp|B9LDT6|NRDR_CHLSY RecName: Full=Transcriptional repressor NrdR
 gi|163670243|gb|ABY36609.1| ATP-cone domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450786|gb|ACM55052.1| ATP-cone domain protein [Chloroflexus sp. Y-400-fl]
          Length = 166

 Score = 38.3 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197
            L ++  DGT   ++ +++   V  AC   + VS+  +           ++  +
Sbjct: 48  SLMVVKKDGTREPYDREKIARGVRTACYR-RPVSAAAIEQLVNDVETAIMNTDE 100


>gi|309805787|ref|ZP_07699824.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LactinV 09V1-c]
 gi|308164907|gb|EFO67153.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LactinV 09V1-c]
          Length = 729

 Score = 38.3 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS     +
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQL 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTIEIASAFVRVLREM 81


>gi|309808467|ref|ZP_07702366.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LactinV 01V1-a]
 gi|312874744|ref|ZP_07734763.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LEAF 2053A-b]
 gi|308168295|gb|EFO70414.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LactinV 01V1-a]
 gi|311089489|gb|EFQ47914.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LEAF 2053A-b]
          Length = 729

 Score = 38.3 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS      
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQF 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTVEIASAFVRVLREM 81


>gi|309809073|ref|ZP_07702946.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325912515|ref|ZP_08174905.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners UPII 60-B]
 gi|308170518|gb|EFO72538.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners SPIN 2503V10-D]
 gi|325478188|gb|EGC81310.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners UPII 60-B]
          Length = 729

 Score = 38.3 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS      
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQF 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTVEIASAFVRVLREM 81


>gi|329920914|ref|ZP_08277463.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners SPIN 1401G]
 gi|328935479|gb|EGG31950.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners SPIN 1401G]
          Length = 729

 Score = 38.3 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS      
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQF 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTVEIASAFVRVLREM 81


>gi|116630045|ref|YP_815217.1| transcriptional regulator NrdR [Lactobacillus gasseri ATCC 33323]
 gi|238853767|ref|ZP_04644133.1| transcriptional regulator NrdR [Lactobacillus gasseri 202-4]
 gi|282851332|ref|ZP_06260697.1| transcriptional regulator NrdR [Lactobacillus gasseri 224-1]
 gi|300361191|ref|ZP_07057368.1| transcriptional regulator NrdR [Lactobacillus gasseri JV-V03]
 gi|311110327|ref|ZP_07711724.1| transcriptional regulator NrdR [Lactobacillus gasseri MV-22]
 gi|122273018|sp|Q041U3|NRDR_LACGA RecName: Full=Transcriptional repressor NrdR
 gi|116095627|gb|ABJ60779.1| Predicted transcriptional regulator, consists of a Zn-ribbon and
           ATP-cone domain [Lactobacillus gasseri ATCC 33323]
 gi|238833576|gb|EEQ25847.1| transcriptional regulator NrdR [Lactobacillus gasseri 202-4]
 gi|282557300|gb|EFB62897.1| transcriptional regulator NrdR [Lactobacillus gasseri 224-1]
 gi|300353810|gb|EFJ69681.1| transcriptional regulator NrdR [Lactobacillus gasseri JV-V03]
 gi|311065481|gb|EFQ45821.1| transcriptional regulator NrdR [Lactobacillus gasseri MV-22]
          Length = 154

 Score = 38.3 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 17/137 (12%)

Query: 123 EERSDVRAAQSHSKS------DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-- 174
           E R+  R  +  +        +      L ++ +DGT  +FN  ++   V  A       
Sbjct: 21  ENRAIRRRRECENCGFRFTTFERVERSPLLVIKNDGTREAFNRDKILHGVMMAAQKRPIS 80

Query: 175 ----DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
               D     V +E  K   + +S  D+   ++     L   +  Y +  +   + +  +
Sbjct: 81  SEQLDTLVDHVENEIRKQGLNEISSKDIGNLVMKELANL--DDVAYIRFAS---IYRQFK 135

Query: 231 EVLTTVYKKPQKATHHE 247
           +V   +         H+
Sbjct: 136 DVSGFMEAMEDMMAKHD 152


>gi|257456080|ref|ZP_05621283.1| transcriptional regulator NrdR [Treponema vincentii ATCC 35580]
 gi|257446538|gb|EEV21578.1| transcriptional regulator NrdR [Treponema vincentii ATCC 35580]
          Length = 157

 Score = 38.3 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAF 54
          K + VIKRNG    FD SK+ R I ++ 
Sbjct: 47 KPLMVIKRNGRREPFDRSKLERGIERSL 74


>gi|225164358|ref|ZP_03726623.1| ATP-cone domain protein [Opitutaceae bacterium TAV2]
 gi|224801038|gb|EEG19369.1| ATP-cone domain protein [Opitutaceae bacterium TAV2]
          Length = 151

 Score = 37.9 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89
           V+KR+G    F+  K+ RAI  A        + +     + I  L E  +  L     S
Sbjct: 51  VLKRDGRREDFERDKLIRAIRVA--------SHKRPIDAEQISMLAEDVIDVLETQYDS 101


>gi|284048632|ref|YP_003398971.1| ATP-cone domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952853|gb|ADB47656.1| ATP-cone domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 152

 Score = 37.9 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 18/80 (22%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS- 89
           VIKR+G    FD  KI   +++AF         +     + I++LT Q    +    ++ 
Sbjct: 51  VIKRDGRREMFDSKKILAGLLRAF--------EKRPFTYEQIQSLTAQIENEIRASGENE 102

Query: 90  ------ALIV--HIEDIQDQ 101
                   +V  H+E I DQ
Sbjct: 103 VKSTKIGEVVMAHLEKI-DQ 121


>gi|309803635|ref|ZP_07697725.1| anaerobic ribonucleoside-triphosphate reductase domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164233|gb|EFO66490.1| anaerobic ribonucleoside-triphosphate reductase domain protein
           [Lactobacillus iners LactinV 11V1-d]
          Length = 301

 Score = 37.9 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS     +
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSQL 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +  +   R +
Sbjct: 60  ASKENVTTVEIASTFVRVLREM 81


>gi|31544696|ref|NP_853274.1| chaperone protein ClpB [Mycoplasma gallisepticum str. R(low)]
 gi|54035798|sp|Q7NAZ3|CLPB_MYCGA RecName: Full=Chaperone protein ClpB
 gi|31541542|gb|AAP56842.1| Chaperone protein ClpB [Mycoplasma gallisepticum str. R(low)]
 gi|284930760|gb|ADC30699.1| Chaperone protein ClpB [Mycoplasma gallisepticum str. R(high)]
 gi|284931335|gb|ADC31273.1| Chaperone protein ClpB [Mycoplasma gallisepticum str. F]
          Length = 717

 Score = 37.9 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192
           +        A  ++ +         N  R++ ++      L D     +  +   ++ D 
Sbjct: 582 AEHILANNPAKTIEELKRKIRPELLN--RIDELITF--KALNDKDLSAIAQKLLSDLSDR 637

Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242
           + +  +           + K  +     AR L   ++REV   + KK  +
Sbjct: 638 IKKQQINITFDKKIVENVVKHGSNTVFGARPLKRYIQREVENFLAKKIIE 687


>gi|261414810|ref|YP_003248493.1| ATP-cone domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371266|gb|ACX74011.1| ATP-cone domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326864|gb|ADL26065.1| transcriptional regulator, NrdR family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 147

 Score = 37.9 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 18/102 (17%)

Query: 26  IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85
           ++ + VIKR+G    F   K+ R IM            +     D I+ L  +    L  
Sbjct: 44  VQPLTVIKRSGEREPFQREKLQRGIM--------NSCKKRPVSMDDIEQLVTRVENSL-- 93

Query: 86  HNKSALIVHIEDIQDQVECSLMQSGHHKITREYV----LYRE 123
                  V  + I + V   L +         YV    +YRE
Sbjct: 94  QMSEGFEVSYDQIGNLVMQELKKLD----AVAYVRFASIYRE 131


>gi|167749236|ref|ZP_02421363.1| hypothetical protein EUBSIR_00187 [Eubacterium siraeum DSM 15702]
 gi|167657787|gb|EDS01917.1| hypothetical protein EUBSIR_00187 [Eubacterium siraeum DSM 15702]
          Length = 109

 Score = 37.9 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 145 LKIMMDDGTLISFNSKRLEMIVEEAC-------SGLQDVSSKIVLSETYKNMYDGLSESD 197
           L ++  D T+  F+  +L   +  A          L+ +  + ++ E        +S  +
Sbjct: 7   LMVVKKDNTIEPFDRDKLINRLARATVKRPVQIEDLEKM-VEDIVQELKNQFRREVSSDE 65

Query: 198 LETALIF 204
           +   ++ 
Sbjct: 66  IGELVLR 72


>gi|300362538|ref|ZP_07058714.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus gasseri JV-V03]
 gi|300353529|gb|EFJ69401.1| anaerobic ribonucleoside-triphosphate reductase large subunit
           [Lactobacillus gasseri JV-V03]
          Length = 738

 Score = 37.9 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 32  IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91
           IKR+G +  F   KI   +            +  +   +         +  +L+      
Sbjct: 23  IKRDGSIYPFALYKIEMVL-----------DNLHLTEHE------ADILPSILKKLNGVK 65

Query: 92  IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-KIMMD 150
               +DI D    +L + G       YV YR      R  +++ +       +L +++  
Sbjct: 66  QTSTKDIADAFVQTLTELGFDDEANAYVDYR------REDEANFEKQTETTNRLDRLVHH 119

Query: 151 DGTLISFNSKRLEMIVE 167
           D T+++ N+ +   +  
Sbjct: 120 DPTIVNENANKDSRVFS 136


>gi|306820396|ref|ZP_07454033.1| acetolactate synthase large subunit [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551559|gb|EFM39513.1| acetolactate synthase large subunit [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 600

 Score = 37.9 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---EIAYENYERQADRGEIKVF 537
           TA       +  V  N  +   +  E +  H  +G  F     AY     +  +      
Sbjct: 470 TAKEYNIPVVWVVMNNYAFGTIAGLEGAHYHHNFGTVFKIDSKAYNPEWSEVAKAYGIKA 529

Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580
           +K+ +   ++++     E+  P++      NI  P   +  ++
Sbjct: 530 KKVQSADEFKEIFKEAIESNEPYLIDVPMENIPVPTDGIWNIN 572


>gi|255029612|ref|ZP_05301563.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria
           monocytogenes LO28]
          Length = 95

 Score = 37.9 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202
            I+ D G   + F+  RL+  +E+       +  +    + +  +   +  +  +L   L
Sbjct: 10  YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69

Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEK 227
           I  +    +   P +    AR  L K
Sbjct: 70  IREAEARTDIHIPEWEHFAARLYLNK 95


>gi|258591835|emb|CBE68138.1| conserved hypothetical protein with ATP cone domain [NC10 bacterium
           'Dutch sediment']
          Length = 157

 Score = 37.9 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           VIK +G    FD  KI   ++KA      K     ++++ I+  +  +   +  +   SA
Sbjct: 51  VIKADGRREPFDRHKILSGLLKA----TQKRPVSVVQLEKIVDEIEGRLAEKAEREMPSA 106

Query: 91  LI 92
            I
Sbjct: 107 EI 108


>gi|80648|pir||C41476 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain
           homolog - Mycobacterium leprae (fragment)
          Length = 57

 Score = 37.9 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676
            T+R AVR LD VID+N + IE A+++N   R +GLG MG Q     L +P+ S
Sbjct: 1   ETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGAMGLQDVFFKLRLPFDS 54


>gi|309805964|ref|ZP_07699991.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167646|gb|EFO69798.1| anaerobic ribonucleoside-triphosphate reductase [Lactobacillus
           iners LactinV 03V1-b]
          Length = 729

 Score = 37.9 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189
             +      + ++  LK    DG++  F   +L M+++    GL   + +++LS     +
Sbjct: 3   KQREAKIITSKVSIPLKATKRDGSVYDFALYKLRMVIDNL--GLAK-NEQVILSAILSKL 59

Query: 190 --YDGLSESDLETALIFSSRTL 209
              + ++  ++ +A +   R +
Sbjct: 60  ASKENVTTVEIASAFVRVLREM 81


>gi|329667764|gb|AEB93712.1| transcriptional regulator [Lactobacillus johnsonii DPC 6026]
          Length = 154

 Score = 37.9 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 17/137 (12%)

Query: 123 EERSDVRAAQSHSKS------DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV 176
           E R+  R  +  +        +      L ++ +DGT  +FN  ++   V  A       
Sbjct: 21  ENRAIRRRRECENCGFRFTTFERVERSPLLVIKNDGTREAFNRDKILHGVMMAAQKRPIS 80

Query: 177 S------SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230
           S         V +E  K   + +S  D+   ++     L   +  Y +  +   + +  +
Sbjct: 81  SEQLDALVDHVENEIRKQGLNEISSKDIGNLVMKELANL--DDVAYIRFAS---IYRQFK 135

Query: 231 EVLTTVYKKPQKATHHE 247
           +V   +         H+
Sbjct: 136 DVSGFMEAMEDMMAKHD 152


>gi|220934730|ref|YP_002513629.1| ATP-cone domain protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|254768038|sp|B8GRT8|NRDR_THISH RecName: Full=Transcriptional repressor NrdR
 gi|219996040|gb|ACL72642.1| ATP-cone domain protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 172

 Score = 37.9 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 20  YPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78
             +      + +V+KR+G    F+  K+   +  A      K A  + +V++ +  +  +
Sbjct: 39  TTYENAELNMPRVVKRDGSREPFNEDKLKSGMTHAL----EKRAVSTDKVEEAVARIKRK 94

Query: 79  TVTRLLQHNKSALI 92
            + +  +   S  I
Sbjct: 95  LLGQGEREVDSRRI 108


>gi|171185433|ref|YP_001794352.1| ATP-cone domain-containing protein [Thermoproteus neutrophilus
          V24Sta]
 gi|170934645|gb|ACB39906.1| ATP-cone domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 91

 Score = 37.9 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA 53
          V+V+KR+G    F P KI  +++KA
Sbjct: 2  VKVVKRDGRTEEFIPEKIVVSVLKA 26


>gi|297587972|ref|ZP_06946616.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
 gi|297574661|gb|EFH93381.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
          Length = 127

 Score = 37.5 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 31  VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90
           V+K+ G V SFD  KI  +I  A  +        S  V  I++++ ++  +       + 
Sbjct: 45  VLKKLGNVESFDKEKIFHSI--AQTSDSAGAKMNSSDVNIIVEDVLKKMKSIKRNVYPTK 102

Query: 91  LIVHIEDIQDQVECSLMQSGHHKITREY 118
                 +I+  VE +L + G+ K+  EY
Sbjct: 103 ------EIRGYVEEALEEEGYKKVLEEY 124


>gi|218297376|ref|ZP_03497982.1| ATP-cone domain protein [Thermus aquaticus Y51MC23]
 gi|218242329|gb|EED08874.1| ATP-cone domain protein [Thermus aquaticus Y51MC23]
          Length = 158

 Score = 37.5 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 2  HPS-KDVNKGDEDAFPSLAYPFPE----KIKGVQVIKRNGGVTSFDPSK 45
           PS +          PS    F      +++ + VIKR+G    F+P K
Sbjct: 17 RPSDEGAAIRRRRECPSCGRRFTTYERTQLEPLMVIKRDGRKEPFNPDK 65


>gi|330993559|ref|ZP_08317494.1| Transcriptional repressor NrdR [Gluconacetobacter sp. SXCC-1]
 gi|329759589|gb|EGG76098.1| Transcriptional repressor NrdR [Gluconacetobacter sp. SXCC-1]
          Length = 170

 Score = 37.5 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 25  KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84
           +++ + VIK +G    F+  K++R++  A             R + +     E+ V  ++
Sbjct: 47  QLRDLVVIKADGRRVPFEREKLARSVRIAL------------RKRPVDAERIERIVNGIV 94

Query: 85  QHNKSALIVHI 95
           +  ++     I
Sbjct: 95  RRLEAMGETDI 105


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.119    0.328 

Lambda     K      H
   0.267   0.0366    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,802,065,726
Number of Sequences: 14124377
Number of extensions: 242918690
Number of successful extensions: 778074
Number of sequences better than 10.0: 5382
Number of HSP's better than 10.0 without gapping: 4967
Number of HSP's successfully gapped in prelim test: 415
Number of HSP's that attempted gapping in prelim test: 744139
Number of HSP's gapped (non-prelim): 10169
length of query: 954
length of database: 4,842,793,630
effective HSP length: 149
effective length of query: 805
effective length of database: 2,738,261,457
effective search space: 2204300472885
effective search space used: 2204300472885
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 86 (37.9 bits)